Citrus Sinensis ID: 045821

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350--
Protein Sequence
MDRLVSRSNSNPSVVPLISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCSAVVIDVGNIGNIGGIMVSSSIPKLNDNDDIISCKCLAI
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHcccccccccHHHccccccccccccccHHHHHccccccccEEEEEEEccccccEEEEEEEccccccccEEEEEcccccccccccEEEEEccEEEEEEccccccccccEEEEEEcccccEEcccccccccccccEEEEccEEEEEEcccccccEEEEEcccccEEEccccccccccEEEEEEccEEEEEEcccccccccEEEEEEcccccEEEccccccccccccEEEEccEEEEEEcccccEEEEEEcccccEEEccccccccccccEEEEEEccEEEEEcccccEEEEEEEEccccccEEEEEcccccccccEEEEcEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHHHHHHHHHHccHHcccHHHHHHHHHHHHHccHHHHHHHHHccccccEEEEEEEcccccccEEEEEccccccccEEEccccccccccccccEEEEEccEEEEEEccccccccccEEEEEccccccEEEcccccccccccEEEEEccEEEEEEccccccEEEEEcccccEEEEcccccccccccEEEEEccEEEEEEcccccccccEEEEEccccccEEEcccccccccccEEEEEccEEEEEEcccccEEEEEccccccEEEEcccccccccccEEEEEEccEEEEEEcccEEEEEEEcccccEEEEEEEEcEEEccccccEEEEEEEEc
Coil and Loop (DISEMBL)
mdrlvsrsnsnpsvvplisglpddiALFCLARVPRRYHAVLKCVSsrwrgllhseeWCAYRRKHNLDETWIYAFCrdnklervccyvldpnstrrSWKMIHelpartlrrkgmgfevlgKNAYLlggcgwsedatsevycydasmntwtdaapmstarcyfpcgvlnqkiycigglgdthswdvydprtnnwklhtepnifteiedsfvmdgkiyiRCSASAATSHVCALVyepstdswlhadanmasgwrgpavvvddaLYVLDQSSGTKLMMWQKesrewspvgrlstlltrppcklvaIGKTIFVIGKGCSAVVidvgnigniggimvsssipklndnddiisckclai
Flexible Loop (DISEMBL)
mdrlvsrsnsnpsvvplisglpDDIALFCLARVPRRYHAVLKCVssrwrgllhseeWCAYRRKHNLDETWIYAFCRDNKLERVCCYVldpnstrrswkmihelpartlrrkgmGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESrewspvgrlstlltrppckLVAIGKTIFVIGKGCSAVVIDVGNIGNIGGIMVsssipklndnddiisCKCLAI
Low Complexity Region (SEG)
MDrlvsrsnsnpsvvplISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPavvvddalyvldQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCSAvvidvgnigniggimvSSSIPKLNDNDDIISCKCLAI
Disordered region (IsUnstruct)
*************VVPLISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCSAVVIDVGNIGNIGGIMVSSSIPKLNDNDDIISCKCL**
Disordered Region (DISOPRED)
********************LPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCSAVVIDVGNIGNIGGIMVSSSIPKLNDNDDIISCKCLAI
Disordered Region (DISEMBL)
***********PSVVPLISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCSAVVIDVGNIGNIGGIMVSSSIPKLNDNDDIISCKCLAI
Disordered Region (DISPRO)
***************PLISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCSAVVIDVGNIGNIGGIMVSSSIPKLNDNDDIISCKCLAI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDRLVSRSNSNPSVVPLISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCSAVVIDVGNIGNIGGIMVSSSIPKLNDNDDIISCKCLAI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	352	2.2.26 [Sep-21-2011]
Q9M2C9	358	F-box/kelch-repeat protei	yes	no	0.960	0.944	0.545	1e-100
Q93W93	434	F-box/kelch-repeat protei	no	no	0.857	0.695	0.293	2e-29
Q9C6Z0	398	F-box/kelch-repeat protei	no	no	0.846	0.748	0.283	2e-23
Q8LAW2	372	F-box protein AFR OS=Arab	no	no	0.809	0.766	0.253	1e-21
Q9CAG8	376	F-box/kelch-repeat protei	no	no	0.764	0.715	0.302	4e-20
Q9SJ04	372	F-box/kelch-repeat protei	no	no	0.696	0.658	0.290	3e-19
Q9LM55	475	F-box/kelch-repeat protei	no	no	0.792	0.587	0.254	3e-19
Q9FZJ3	346	Putative F-box/kelch-repe	no	no	0.738	0.751	0.264	8e-19
Q9M1W7	352	F-box/kelch-repeat protei	no	no	0.875	0.875	0.250	1e-17
Q9T035	365	Putative F-box/kelch-repe	no	no	0.900	0.868	0.267	4e-17

>sp|Q9M2C9|SKIP4_ARATH F-box/kelch-repeat protein SKIP4 OS=Arabidopsis thaliana GN=SKIP4 PE=1 SV=1

 Score =  365 bits (936), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/352 (54%), Positives = 242/352 (68%), Gaps = 14/352 (3%)

Query: 9   NSNPSVVPLISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDE 68
            SN + + LISG+PDDI+  CLARVPR YH  +KCVS RWR  + S+E C YR + NL E
Sbjct: 13  QSNETQIALISGVPDDISKSCLARVPREYHMAMKCVSRRWRDFVCSDEMCDYRNEFNLAE 72

Query: 69  TWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGC 128
           +WIYA CRD     V  ++L+P S+RRSWK I++ P   +R +GMGF VLGK  ++LGGC
Sbjct: 73  SWIYALCRDIS-GGVFLHMLNPFSSRRSWKRINDYPYIPMR-EGMGFAVLGKRLFVLGGC 130

Query: 129 GWSEDATSEVYCYDASMNTWTDAAP-MSTARCYFPCGVLNQKIYCIGGLG----DTHSWD 183
           GW EDAT E+YCYDA+MNTW D  P +ST RCYF C  L+ KI  IGGLG       +WD
Sbjct: 131 GWLEDATDEIYCYDAAMNTWFDVVPPLSTKRCYFACETLDGKIIAIGGLGLNPNAKRTWD 190

Query: 184 VYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHAD 243
           +YDP T   K  ++ NI  E+EDSFVMDG+IYIR     +++ V    Y  S+  W   D
Sbjct: 191 IYDPLTRTCKSCSDVNIVPEMEDSFVMDGRIYIRGGVGGSSTAV----YSASSGIWERMD 246

Query: 244 ANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIG 303
            +MASGWRGPAVVV   LYVLDQ+ G KL MW K++R W  +G+LS L+ + PC+LV+IG
Sbjct: 247 DDMASGWRGPAVVVAGDLYVLDQTFGAKLTMWCKDTRMWIHIGKLSQLVMKQPCRLVSIG 306

Query: 304 KTIFVIGKGCSAVVIDVGNI--GNIGGIMVSSSIPKLNDND-DIISCKCLAI 352
            +IFVIGK CS VVIDV N+    + G+MV SSIPK  D+D D+ISCK +AI
Sbjct: 307 NSIFVIGKDCSTVVIDVENVRKNKMNGVMVCSSIPKTWDDDIDVISCKSVAI 358

Arabidopsis thaliana (taxid: 3702)

>sp|Q93W93|FBK22_ARATH F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 139/317 (43%), Gaps = 15/317 (4%)

Query: 16  PLISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDETWIYAFC 75
           PL+ GLPDD+A+ CL RVPR  H  L+ V  RW  L     + + R+   + E W+Y F 
Sbjct: 77  PLLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRKLLGMSEEWVYVFK 136

Query: 76  RDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-GKNAYLLGGCGWSEDA 134
           RD +  ++     DP S  + W+ +  +P       G G  VL G + YL GG      +
Sbjct: 137 RD-RDGKISWNTFDPIS--QLWQPLPPVPREYSEAVGFGCAVLSGCHLYLFGGKDPLRGS 193

Query: 135 TSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGD-----THSWDVYDPRT 189
              V  Y+A  N W  A  M   R +F C V+N  +Y  GG  +       S +VYDP  
Sbjct: 194 MRRVIFYNARTNKWHRAPDMLRKRHFFGCCVINNCLYVAGGECEGIQRTLRSAEVYDPNK 253

Query: 190 NNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASG 249
           N W    + +         V D K +++   S     V +  Y+P  +SW      M +G
Sbjct: 254 NRWSFIADMSTAMVPLIGVVYDKKWFLKGLGSHQL--VMSEAYDPEVNSWSPVSDGMVAG 311

Query: 250 WRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPV----GRLSTLLTRPPCKLVAIGKT 305
           WR P   ++  LY LD   G KL ++ + +  W+        L    +     LV +   
Sbjct: 312 WRNPCTSLNGRLYGLDCRDGCKLRVFDESTDSWNKFMDSKAHLGNSKSLEAAALVPLHNK 371

Query: 306 IFVIGKGCSAVVIDVGN 322
           + +I    S  ++DV N
Sbjct: 372 LCIIRNNMSMSLVDVSN 388

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6Z0|FBK17_ARATH F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana GN=At1g30090 PE=2 SV=1

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 143/324 (44%), Gaps = 26/324 (8%)

Query: 16  PLISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEE-WCAYRRKHNLDETWIYAF 74
           PLI GLPDD+AL CL RVP + H   K V  RW  L  ++E + A R++    + W++  
Sbjct: 52  PLIPGLPDDVALNCLLRVPVQSHVSSKSVCKRWHLLFGTKETFFAKRKEFGFKDPWLFVV 111

Query: 75  CRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRK--GMGFEVLGK----NAYLLGGC 128
                  ++   VLD  +   +W   HE+PA   R K    GF  +        ++ GG 
Sbjct: 112 GFSRCTGKIQWKVLDLRNL--TW---HEIPAMPCRDKVCPHGFRSVSMPREGTMFVCGGM 166

Query: 129 GWSEDATSE-VYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGG-LGDTHSWD--- 183
               D   + V  YD   N WT    M TAR +F  GV++  IY  GG   D +  D   
Sbjct: 167 VSDSDCPLDLVLKYDMVKNHWTVTNKMITARSFFASGVIDGMIYAAGGNAADLYELDCAE 226

Query: 184 VYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCS-ASAATSHVCALVYEPSTDSWLHA 242
           V +P   NW+  +         D+ V++GK+ +               VY+P TD W   
Sbjct: 227 VLNPLDGNWRPVSNMVAHMASYDTAVLNGKLLVTEGWLWPFFVSPRGQVYDPRTDQWETM 286

Query: 243 DANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAI 302
              +  GW G +VV+ D L+++ +    K+ ++   +  W  +      L    C+  A+
Sbjct: 287 SMGLREGWTGTSVVIYDRLFIVSELERMKMKVYDPVTDSWETIN--GPELPEQICRPFAV 344

Query: 303 ---GKTIFVIGKGCSAVVIDVGNI 323
              G  ++V+G+      + VGNI
Sbjct: 345 NCYGNRVYVVGRNLH---LAVGNI 365

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LAW2|AFR_ARATH F-box protein AFR OS=Arabidopsis thaliana GN=AFR PE=1 SV=2

 Score =  103 bits (258), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 132/316 (41%), Gaps = 31/316 (9%)

Query: 16  PLISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDETWIYAFC 75
           PLISGLP+DIA  CL R+P  YHA+ + VSS W   + +  +   ++  ++   +++ F 
Sbjct: 27  PLISGLPNDIAELCLLRLPYPYHALYRSVSSSWNKTITNPRFLFSKQSLSISSPYLFVFA 86

Query: 76  RDNKLERVCCYVLDPNSTR--------RSWKMI---HELPARTLRRKGMGFEVLGKNAYL 124
            +    R+    LD  S R         S+  I   H L   ++ R+G          ++
Sbjct: 87  FNKSTARIQWQSLDLASGRWFVLPPMPNSFTKISSPHALSCASMPRQG--------KLFV 138

Query: 125 LGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGG-LGD----T 179
           LGG     D       Y A  N W+  +PM + R YF  G +N KI  +GG +G     T
Sbjct: 139 LGGG----DVNRSAVVYTALTNRWSCISPMMSPRTYFVSGNVNGKIMAVGGSVGGNGEAT 194

Query: 180 HSWDVYDPRTNNWKLHTE-PNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDS 238
              + YDP  + W +  + P +  + + + +          A          VY+    +
Sbjct: 195 TEVESYDPDNDTWTVVKKLPMVLAKYDSAVIGKEMCVTEGWAWPFMFPPMGQVYDSDEGT 254

Query: 239 WLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVG--RLSTLLTRPP 296
           W      M  GW G +VV+ D L+V+ +     + ++  +   W  V   +L     R P
Sbjct: 255 WREMSGGMKEGWTGVSVVIRDRLFVISEHGDFPMKVYCSDDDTWRYVSGEKLQGEKMRRP 314

Query: 297 CKLVAIGKTIFVIGKG 312
             +      +FV+  G
Sbjct: 315 FAVTGADDRVFVVASG 330

Component of SCF (ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyls elongation in response to red and far-red light exposure.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAG8|FBK28_ARATH F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana GN=At1g67480 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 130/298 (43%), Gaps = 29/298 (9%)

Query: 4   LVSRSNSNPSVVPLISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRK 63
           L SR + N    PLI GLPDD+A  CLA VPR     +  V  +WR ++ S+E+   RR 
Sbjct: 26  LGSRLSENFMDDPLIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITVRRL 85

Query: 64  HNLDETWIYAFC-----RDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL 118
             + E W+Y        +DN+ E     V+D    + S       PA+T      GF+V+
Sbjct: 86  AGMLEEWLYVLTMNAGGKDNRWE-----VMDCLGQKLSSLPPMPGPAKT------GFKVV 134

Query: 119 GKNAYLL--GGC---GWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCI 173
             +  LL   GC     S  A+++VY YD  +N+W+  A +  AR  F C  +N  +Y +
Sbjct: 135 VVDGKLLVIAGCCMINGSLVASADVYQYDTCLNSWSRLADLEVARYDFACAEVNGHVYVV 194

Query: 174 GGLG----DTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCA 229
           GG G       S +VYDP T  W              +   +GK+Y+    S  T     
Sbjct: 195 GGHGVDGESLSSAEVYDPETCTWTFIESLRRPRWGCFASAFNGKLYVMGGRSNFTIGNSK 254

Query: 230 L--VYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPV 285
           L  VY     SW H   N  +      V V   L+ +D  +  K+ ++  E   W  V
Sbjct: 255 LLDVYNTQCGSW-HGSKNGLT-MVTAHVEVGKKLFCIDWKNHRKMSVFNAEDETWEVV 310

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJ04|SKIP6_ARATH F-box/kelch-repeat protein SKIP6 OS=Arabidopsis thaliana GN=SKIP6 PE=1 SV=1

 Score = 96.3 bits (238), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 125/272 (45%), Gaps = 27/272 (9%)

Query: 8   SNSNPSVVPLISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLD 67
           + S   ++PL+S   +D+AL CLARVPR ++ +L  VS  +R L  S    A R      
Sbjct: 14  TKSPAQLIPLLS---EDVALSCLARVPRCHYPILSLVSKTFRSLPTSPLLYATRALVGAT 70

Query: 68  ETWIYAFCRDNKLERVCCYVL----DPNSTRRSWKMIHELPA-RTLRRKGMGFEVLGKNA 122
           E  +Y   R       C + L      NST    KM+  +P+  +    G  + V+    
Sbjct: 71  ENILYVAIRIPPESGACWFTLLHRTLSNSTNS--KMLVPIPSCPSPSLVGSAYVVVDSEI 128

Query: 123 YLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGG-----LG 177
           Y++GG    +  +S V+  D   +TW   + M   R +   GV++ KIY IGG       
Sbjct: 129 YVIGG-SIRDVPSSSVWVLDCRFHTWRRVSNMRVGREFAAAGVIDGKIYVIGGCVVDNWA 187

Query: 178 DTHSW-DVYDPRTNNWKLHTEPNIFTE---IEDSFVMDGKIYIRCSASAATSHVCALVYE 233
            + +W +++D +T  W+    P +      +  S VM+GK+Y       A +    +VYE
Sbjct: 188 RSINWAEMFDIKTQTWEPVASPGMEVREKWMHASAVMEGKVY-------AMADRNGVVYE 240

Query: 234 PSTDSWLHADANMASGWRGPAVVVDDALYVLD 265
           P    W   +  +  GWRG A V+++ LY  D
Sbjct: 241 PKEKKWEMPEKRLDLGWRGRACVIENILYCYD 272

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LM55|FBK8_ARATH F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana GN=At1g22040 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 153/354 (43%), Gaps = 75/354 (21%)

Query: 3   RLVSRSNSNPSVVPLISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRR 62
           R +S  N       LI  LPD++++  LAR+PR  ++ ++ VS RWR  + + E  + R+
Sbjct: 29  RKISSENDEEECCRLIPSLPDELSIQILARLPRICYSSVRLVSRRWRSAVSTSEVYSLRK 88

Query: 63  KHNLDETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLR---RKGM------ 113
           +    E W+Y   + ++ +++  Y LDP ST+  W+ +  +P        RK +      
Sbjct: 89  ELGRTEEWLYVLTKGHE-DKLLWYALDPVSTK--WQRLPPMPVVVYEEESRKSLSGLWNM 145

Query: 114 ---GFEV-------LGK-------------------NAYLLGGCGWSEDATSEVYCYDAS 144
               F V       LG+                     Y++GG   S+   S V+ +D  
Sbjct: 146 ITPSFNVGAIVRSFLGRRDSSEQMPFCGCAIGAVDGGLYVIGGLSRSK-TVSCVWRFDPI 204

Query: 145 MNTWTDAAPMSTARCYFPCGVLNQKIY-------CIGGLGDTHSWDVYDPRTNNW-KLHT 196
           +N+W++ + M  +R Y   GVLN+K+Y         GGL    S +VYDP T+ W ++ +
Sbjct: 205 LNSWSEVSSMLASRAYSKTGVLNKKLYVVGGVDRGRGGLSPLQSAEVYDPSTDAWSEVPS 264

Query: 197 EPNIFTEI-EDSFVMDGKIYIRCSASAATSHVC---------------ALVYEPSTDSWL 240
            P    ++  ++F+ D    I    +     +C                 VY+P T+ W+
Sbjct: 265 MPFSKAQVLPNAFLADLLKPIATGMTCYNGRLCVPQSLYSWPFFVDVGGEVYDPETNLWV 324

Query: 241 HADANMASGWRGP------AVVVDDALYVLDQSSGT---KLMMWQKESREWSPV 285
              + M  GW         +VVVD  LY  D SS     K+ ++ ++   W  V
Sbjct: 325 EMPSGMGEGWPARQAGTKLSVVVDGELYAFDPSSSMENGKIKVYDQKEDTWKVV 378

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZJ3|FBK16_ARATH Putative F-box/kelch-repeat protein At1g27420 OS=Arabidopsis thaliana GN=At1g27420 PE=4 SV=2

 Score = 95.1 bits (235), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 121/284 (42%), Gaps = 24/284 (8%)

Query: 16  PLISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDETWIYAFC 75
           P+I GL DD+A  C++++PR    +   V  RWR  L S+ + A R+     E ++    
Sbjct: 9   PIIPGLTDDVAELCVSKIPRSSFQITSQVCRRWRSFLRSQHFAAVRKLTGTVEEFLCVLM 68

Query: 76  RDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-GKNAYLLGGCGWSE-- 132
                  V   V D +      K+    P     ++G G  VL G      GG    E  
Sbjct: 69  ESECGRDVYWEVFDASGN----KLGQIPPVPGPLKRGFGVAVLDGGKIVFFGGYTEVEGS 124

Query: 133 -------DATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLG-DTHSW-- 182
                   A+++VY +D + N+W   A M+  R  F    +N  +Y I G   DT+S   
Sbjct: 125 GINSTTVSASADVYEFDPANNSWRKLAGMNIPRYNFAFAEVNGLLYVIRGYSTDTYSLSN 184

Query: 183 -DVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLH 241
            +VY+P+TN W L   PN       +F    K+Y   + S         +Y+P T +W  
Sbjct: 185 AEVYNPKTNQWSLMHCPNRPVWRGFAFAFSSKLYAVGNGSRFID-----IYDPKTQTWEE 239

Query: 242 ADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPV 285
            ++  +        VV + +Y +D++   +L ++  E   WS V
Sbjct: 240 LNSEQSVSVYS-YTVVRNKVYFMDRNMPGRLGVFDPEENSWSSV 282

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1W7|SKI30_ARATH F-box/kelch-repeat protein SKIP30 OS=Arabidopsis thaliana GN=SKIP30 PE=1 SV=2

 Score = 90.9 bits (224), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 139/355 (39%), Gaps = 47/355 (13%)

Query: 17  LISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDETW--IYAF 74
           L+ G+P+ +AL CLA VP   H  L+ VS  WR  + S E    R++    E    + AF
Sbjct: 11  LLDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCVCAF 70

Query: 75  CRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSED- 133
             +N  +     V  PN  R  W  +  LP+R       G        ++LGG   +   
Sbjct: 71  DPENIWQ-----VYSPNCDR--WLTLPLLPSRIRHLAHFGAVTTAGMLFVLGGGSDAVSP 123

Query: 134 ---------ATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGL----GDTH 180
                    AT +V+ YD     WT  A M   R  F C VL  KI   GG         
Sbjct: 124 VTGDHDGTFATDQVWSYDFVQRQWTPRASMLVPRAMFACCVLQGKIVVAGGFTTCRKSIS 183

Query: 181 SWDVYDPRTNNWK----LHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPST 236
             ++YDP  + W     LH   N         V++GK+++     +        V E   
Sbjct: 184 GAEMYDPENDVWTSIPDLHQTHN---SACSGLVVNGKVHVLHKGLSTVQ-----VLESVK 235

Query: 237 DSWLHADANMASGW-RGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRP 295
             W   D     GW +GP VVV+D LYV+        +++++E   W  V   S    R 
Sbjct: 236 LGWDVKD----YGWPQGPMVVVEDVLYVMSHG-----LVFKQEGDTWKMVASASEFKRRI 286

Query: 296 PCKLVAIGKTIFVIGK--GCSAVVIDVGNIGNIGGIMVSSSIPKLNDNDDIISCK 348
              + ++   + ++G   G   +  D+  + ++  + V +  P       +  C+
Sbjct: 287 GMAMTSLSDEVLIVGGVIGPDRLNWDIKPLSDVDALTVGNDRPAWRSVAPMTRCR 341

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9T035|FBK97_ARATH Putative F-box/kelch-repeat protein At4g39290 OS=Arabidopsis thaliana GN=At4g39290 PE=4 SV=1

 Score = 89.0 bits (219), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 151/352 (42%), Gaps = 35/352 (9%)

Query: 18  ISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDETWIYA--FC 75
            S LPDD+ L CLARV + Y+  L  VS ++R L+ S E    R       + +Y     
Sbjct: 13  FSMLPDDLVLNCLARVSKVYYPSLSFVSKKFRSLIASTELQELRSFLGCTSSGLYVCLRF 72

Query: 76  RDNKLERVCCYVLDP--NSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSED 133
           R N   R  C+ L    +S+ +    I  L +    R G+    +G + Y +GG   +  
Sbjct: 73  RTNTDYRQICFTLRQKISSSAKILVPISSLDSPFDYRSGV--VAVGSDIYAIGGRNLNNS 130

Query: 134 ATSEVYCYDASMNTWTDAAPMSTARCYFPCG-VLNQKIYCIGG---LGDTHSWDVYDPRT 189
           A+S+V   D   +TW +A  M  AR  FP   VLN KIY IGG   L  T+  +V+D +T
Sbjct: 131 ASSKVMVMDCRSHTWREAPSMRVARDDFPSTCVLNGKIYVIGGCKNLDSTNWIEVFDTKT 190

Query: 190 NNWKLHTEPNIFTEIEDSF---VMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANM 246
             W+    PN   E+   F   ++  K  I  S S   +    + YE     W     ++
Sbjct: 191 QTWEFLQIPN--EEVCRGFNYKIVGYKEAIHVS-SLENNRATFMTYEIHKGRWREPHLSL 247

Query: 247 ASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESRE-WSPV-GRLSTLLTRPP---CKLVA 301
           + G+     V+++  Y        +++ W    R+ W  + G +   +  P     K+V 
Sbjct: 248 SHGFHFSNCVIENVFY----RYSYEMLQWYDSCRKIWKNLKGFVRRSIMNPRGEGVKMVN 303

Query: 302 IGKTIFVIGKG----------CSAVVIDVGNIGNIGGIMVSSSIPKLNDNDD 343
            G  I ++ +           C  VVI+  + G I G++  S +  + D  +
Sbjct: 304 YGGNIVLLWEECVTIKKKLIWCEEVVIEKKHQGEIWGLLKWSDVVFITDEKN 355

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
359489602	359	PREDICTED: F-box/kelch-repeat protein SK	0.954	0.935	0.718	1e-141
359489794	359	PREDICTED: LOW QUALITY PROTEIN: F-box/ke	0.954	0.935	0.703	1e-139
255541572	353	Protein AFR, putative [Ricinus communis]	0.951	0.949	0.664	1e-131
449433083	358	PREDICTED: F-box/kelch-repeat protein SK	0.988	0.972	0.585	1e-118
356520414	362	PREDICTED: F-box/kelch-repeat protein SK	0.951	0.925	0.605	1e-117
356522620	361	PREDICTED: F-box/kelch-repeat protein SK	0.951	0.927	0.584	1e-111
224130254	347	predicted protein [Populus trichocarpa]	0.948	0.962	0.587	1e-109
356520416	362	PREDICTED: F-box/kelch-repeat protein SK	0.997	0.969	0.538	1e-104
26453288	358	putative SKP1 interacting partner 4 SKIP	0.960	0.944	0.545	2e-98
18411974	358	SKP1 interacting partner 4 [Arabidopsis	0.960	0.944	0.545	2e-98

>gi|359489602|ref|XP_002274480.2| PREDICTED: F-box/kelch-repeat protein SKIP4-like [Vitis vinifera] gi|297745280|emb|CBI40360.3| unnamed protein product [Vitis vinifera]

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 245/341 (71%), Positives = 274/341 (80%), Gaps = 5/341 (1%)

Query: 16  PLISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDETWIYAFC 75
           PLI GLPDDIAL CLARVPR+YH +LKCVS RWR L+ SEEW AYR+KH LDE WIYA C
Sbjct: 20  PLICGLPDDIALICLARVPRKYHTLLKCVSRRWRDLVSSEEWHAYRQKHKLDEPWIYALC 79

Query: 76  RDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDAT 135
           RD K ERVCCYVLDP STRRSWK+I   P R+L+RKGM FEVLGK  YLLGGCGW EDAT
Sbjct: 80  RD-KFERVCCYVLDPYSTRRSWKLIEGFPPRSLKRKGMSFEVLGKKVYLLGGCGWLEDAT 138

Query: 136 SEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLG----DTHSWDVYDPRTNN 191
            EVY YDAS N W++AAP+STARCYF C VLN KIY IGGLG    D HSWD Y+P TN+
Sbjct: 139 DEVYSYDASTNRWSEAAPLSTARCYFACEVLNGKIYAIGGLGSKSNDPHSWDTYNPHTNS 198

Query: 192 WKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWR 251
           WK H +PNI  +IEDS V+D KIYIRC  S  TSHV A+VY PS  +W HADA+M  GW+
Sbjct: 199 WKSHLDPNIVPDIEDSIVLDEKIYIRCGTSGLTSHVYAVVYNPSHGTWQHADADMVLGWQ 258

Query: 252 GPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGK 311
           GPAVVVD  LYVLDQ  GT+LMMWQKESR+W  VGRLS LLT PPC+LVAIGK+IFVIGK
Sbjct: 259 GPAVVVDGTLYVLDQRLGTRLMMWQKESRKWVAVGRLSPLLTCPPCRLVAIGKSIFVIGK 318

Query: 312 GCSAVVIDVGNIGNIGGIMVSSSIPKLNDNDDIISCKCLAI 352
           G S VV D+GN+GN+GG+MVSSSIPKL  +DD+ISCK LAI
Sbjct: 319 GLSTVVFDIGNVGNMGGVMVSSSIPKLTSDDDVISCKILAI 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489794|ref|XP_003633979.1| PREDICTED: LOW QUALITY PROTEIN: F-box/kelch-repeat protein SKIP4-like [Vitis vinifera]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 240/341 (70%), Positives = 272/341 (79%), Gaps = 5/341 (1%)

Query: 16  PLISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDETWIYAFC 75
           PLI GLPDDIAL CLARVPR+YH +LKCVS RWR L+ SEEW AYR+KH LDE WIYA C
Sbjct: 20  PLICGLPDDIALICLARVPRKYHTLLKCVSRRWRDLVSSEEWHAYRQKHKLDEPWIYALC 79

Query: 76  RDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDAT 135
           RD K +RVCCYVLDP STRRSWK+I   P R+L+RKGM FEVLGK  YLLGGCGW EDAT
Sbjct: 80  RD-KFKRVCCYVLDPYSTRRSWKLIEGFPPRSLKRKGMSFEVLGKKVYLLGGCGWLEDAT 138

Query: 136 SEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLG----DTHSWDVYDPRTNN 191
            EVY YDAS N W++AAP+STARCYF C VLN KIY IGGLG    D HSWD Y+P TN+
Sbjct: 139 DEVYSYDASTNRWSEAAPLSTARCYFACEVLNGKIYAIGGLGSKSNDPHSWDTYNPHTNS 198

Query: 192 WKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWR 251
           WK H++PNI  +IED+ V+D KIYIRC  SA TSHV  +VY PS  +W HADA+M  GW+
Sbjct: 199 WKSHSDPNIVPDIEDTIVLDEKIYIRCGTSALTSHVYVVVYNPSHGTWQHADADMVLGWQ 258

Query: 252 GPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGK 311
           GPAVVVD   +VLDQ  GT+LMMWQKES +W  VGRLS LLT PPC+LVAIGK+IFVIGK
Sbjct: 259 GPAVVVDGXFFVLDQRLGTRLMMWQKESTKWVAVGRLSPLLTCPPCRLVAIGKSIFVIGK 318

Query: 312 GCSAVVIDVGNIGNIGGIMVSSSIPKLNDNDDIISCKCLAI 352
           G S VV D+GN GN+GG+MVSSSIPKL  +DD+ISCK LAI
Sbjct: 319 GLSTVVFDIGNAGNMGGVMVSSSIPKLTSDDDVISCKILAI 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541572|ref|XP_002511850.1| Protein AFR, putative [Ricinus communis] gi|223549030|gb|EEF50519.1| Protein AFR, putative [Ricinus communis]

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 226/340 (66%), Positives = 267/340 (78%), Gaps = 5/340 (1%)

Query: 17  LISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDETWIYAFCR 76
           LI GLPDDI LFCLARVPR+YH VLKCV  RWR L+ SEEW AYR KHNL ETWIYA CR
Sbjct: 15  LIRGLPDDIVLFCLARVPRKYHTVLKCVCRRWRDLVCSEEWRAYRMKHNLSETWIYALCR 74

Query: 77  DNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATS 136
           D K +++CCYVLDP+S+RR WK+I  LP+  L+RKGMGFE LGK  Y LGGCGW EDAT 
Sbjct: 75  D-KFDQICCYVLDPDSSRRCWKLIQGLPSHCLKRKGMGFEALGKKLYFLGGCGWLEDATD 133

Query: 137 EVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLG----DTHSWDVYDPRTNNW 192
           E YCYD S N+WT+A  +STARCYF C V++ KIY IGGLG    D HSWD +D   N W
Sbjct: 134 EAYCYDVSRNSWTEATSLSTARCYFACEVMDGKIYAIGGLGSKLSDPHSWDTFDAHKNCW 193

Query: 193 KLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRG 252
           + H++ NI  ++EDS V+DGKIYIRC AS+ +SHV A++YEP   +W HAD +MASGWRG
Sbjct: 194 ESHSDANIVPDVEDSIVLDGKIYIRCGASSVSSHVYAVLYEPLNGTWQHADVDMASGWRG 253

Query: 253 PAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKG 312
           PAVVV   LYVLDQSSGT+LM+W+K+ REW  VGRLS+LLTRPPC++VAIGK IF+IGKG
Sbjct: 254 PAVVVXXCLYVLDQSSGTRLMIWRKDKREWMAVGRLSSLLTRPPCRIVAIGKRIFIIGKG 313

Query: 313 CSAVVIDVGNIGNIGGIMVSSSIPKLNDNDDIISCKCLAI 352
            S VV D+G  GN+ G+MVSSSIP LN  DD+ISCK LA+
Sbjct: 314 LSTVVFDIGKTGNMEGVMVSSSIPGLNYEDDVISCKSLAL 353

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433083|ref|XP_004134327.1| PREDICTED: F-box/kelch-repeat protein SKIP4-like [Cucumis sativus] gi|449480385|ref|XP_004155879.1| PREDICTED: F-box/kelch-repeat protein SKIP4-like [Cucumis sativus]

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/362 (58%), Positives = 267/362 (73%), Gaps = 14/362 (3%)

Query: 1   MDRLVSRSNSNPSVVP-----LISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSE 55
           MD+++  SN    + P     LI  LPDDIAL  L+RVPR+YH  LKCVS+RW+GL++S+
Sbjct: 1   MDKVLG-SNGLEELTPPPGRSLIHSLPDDIALSILSRVPRKYHHNLKCVSNRWKGLVNSQ 59

Query: 56  EWCAYRRKHNLDETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGF 115
           EW A R K+NL ETWIYA CRD K E+V CYVLD NS++R WK +   P  + +RKGMGF
Sbjct: 60  EWYARREKNNLAETWIYALCRD-KSEQVSCYVLDLNSSKRCWKQMKNWPTCSFKRKGMGF 118

Query: 116 EVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGG 175
           E +G+  Y+LGGC WSEDA+ EVYCYD S+N+WT  A +S+ARCYF C VLN+K+Y IGG
Sbjct: 119 EAMGRKLYVLGGCSWSEDASDEVYCYDTSINSWTPVAQLSSARCYFACEVLNEKLYTIGG 178

Query: 176 L----GDTHSWDVYDPRTNNWKLHTE-PNIFTEIEDSFVMDGKIYIRCSASAATSHVCAL 230
           +    GD HSWDVYDP TN W+ + +  NI  EIEDS VMDGKIYIR  +  A S V AL
Sbjct: 179 ICPSSGDLHSWDVYDPSTNTWEPYLDITNIQNEIEDSIVMDGKIYIRLRS--ADSQVYAL 236

Query: 231 VYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLST 290
           VY+PS+  W H+++ M SGWRGPAV+VD  LYVLDQSSGT+LMMW  E + W PVGR S+
Sbjct: 237 VYDPSSGMWQHSNSEMVSGWRGPAVIVDKTLYVLDQSSGTRLMMWNNEDKGWIPVGRFSS 296

Query: 291 LLTRPPCKLVAIGKTIFVIGKGCSAVVIDVGNIGNIGGIMVSSSIPKLNDNDDIISCKCL 350
           LLTRPPCKLV +G  I V+GKG S+V+ DV N+  + G+MVSSSIP+L+ + D+++CKC 
Sbjct: 297 LLTRPPCKLVGVGTKIVVVGKGLSSVIFDVSNVKTMMGLMVSSSIPRLDSDIDVLACKCT 356

Query: 351 AI 352
            I
Sbjct: 357 TI 358

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520414|ref|XP_003528857.1| PREDICTED: F-box/kelch-repeat protein SKIP4-like [Glycine max]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/340 (60%), Positives = 252/340 (74%), Gaps = 5/340 (1%)

Query: 17  LISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDETWIYAFCR 76
           LI GLPDD++L CLARVPR+YH+VLKCVS RWR L+ SEEW  YRRKH LDETWIYA CR
Sbjct: 24  LICGLPDDLSLMCLARVPRKYHSVLKCVSKRWRDLICSEEWYHYRRKHKLDETWIYALCR 83

Query: 77  DNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATS 136
           D K   + CYVLDP ++RR WK++  LP     RKGMGFE LG   +LLGGC    D+T 
Sbjct: 84  D-KSNEIFCYVLDPTTSRRYWKLLDGLPPHISNRKGMGFEALGNKLFLLGGCSGFLDSTD 142

Query: 137 EVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGL---GDTHSWDVYDPRTNNWK 193
           E Y YDAS N W +AA +S ARCYF C VL++K+Y IGGL      +SWD +DP T  W 
Sbjct: 143 EAYSYDASSNCWVEAASLSNARCYFACEVLDEKLYAIGGLVSNSSDNSWDTFDPLTKCWT 202

Query: 194 LHTEPNIFTEIEDSFVMDGKIYIRCS-ASAATSHVCALVYEPSTDSWLHADANMASGWRG 252
            H +PNI ++IEDS V+DGKIY RC+  +    H  A+VYEPS+ +W +ADA+M SGW G
Sbjct: 203 FHIDPNIASDIEDSVVLDGKIYTRCARHTDVAPHAFAVVYEPSSGTWQYADADMVSGWTG 262

Query: 253 PAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKG 312
           PAVVV   LYVLDQS GT+LMMW KE REW PVG+LS LLTRPPC+LVA+GK+IF++GK 
Sbjct: 263 PAVVVYGTLYVLDQSLGTRLMMWHKERREWIPVGKLSPLLTRPPCQLVAVGKSIFIVGKT 322

Query: 313 CSAVVIDVGNIGNIGGIMVSSSIPKLNDNDDIISCKCLAI 352
            S VV+DVG++GN G +M+ SSIP L  + ++ISCKCL+I
Sbjct: 323 LSTVVVDVGDLGNEGQVMMGSSIPGLLSDFNVISCKCLSI 362

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522620|ref|XP_003529944.1| PREDICTED: F-box/kelch-repeat protein SKIP4-like [Glycine max]

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/339 (58%), Positives = 244/339 (71%), Gaps = 4/339 (1%)

Query: 16  PLISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDETWIYAFC 75
           P+I GLPDDI+L CLAR+PR+YH+V+KCVS RWR L+ SEEW  YRRKH LDETWIYA C
Sbjct: 23  PIICGLPDDISLMCLARIPRKYHSVMKCVSKRWRNLICSEEWFCYRRKHKLDETWIYALC 82

Query: 76  RDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDAT 135
           RD K   + CYVLDP  +RR WK+I  LP +  +RKG+GFE LG   +LLGGC    D+T
Sbjct: 83  RD-KSNEIFCYVLDPTLSRRYWKLIDNLPPQISKRKGIGFEALGNKLFLLGGCSEFLDST 141

Query: 136 SEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDT---HSWDVYDPRTNNW 192
            EVY YDAS N W  A  +STAR  F C VL++K+Y IGG G     HSW+ +DP TN W
Sbjct: 142 DEVYSYDASSNCWAQATSLSTARYNFGCEVLDKKLYAIGGGGSKSSYHSWETFDPLTNCW 201

Query: 193 KLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRG 252
              T+P I  EI+DS V+DGKIY+RCS    T HV A+VYEPS+ +W +AD +M SGW G
Sbjct: 202 TSQTDPKIVNEIKDSVVLDGKIYVRCSRYPVTPHVFAVVYEPSSGTWEYADDDMVSGWTG 261

Query: 253 PAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKG 312
           PAV VD  LYVLDQS+GTKLMMW KE REW  VG+LS L  R PC+LVA+GK+IFV+G+ 
Sbjct: 262 PAVAVDGTLYVLDQSAGTKLMMWHKERREWILVGKLSPLPIRQPCQLVAVGKSIFVVGRV 321

Query: 313 CSAVVIDVGNIGNIGGIMVSSSIPKLNDNDDIISCKCLA 351
            S VV+DV N+GN   ++V S+IP L  + ++ S KCL+
Sbjct: 322 LSTVVVDVDNLGNEDQVIVGSAIPGLLFDVNVTSVKCLS 360

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130254|ref|XP_002320790.1| predicted protein [Populus trichocarpa] gi|222861563|gb|EEE99105.1| predicted protein [Populus trichocarpa]

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/342 (58%), Positives = 246/342 (71%), Gaps = 8/342 (2%)

Query: 17  LISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDETWIYAFCR 76
           LI GLPDDIAL CLARVPR+YHAVLKCVS RWR  + S+E   YRR H+L ETWIYA C 
Sbjct: 8   LICGLPDDIALSCLARVPRKYHAVLKCVSKRWREFVCSDELYDYRRMHSLSETWIYALCC 67

Query: 77  DNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATS 136
           D K  ++  YV+DPN ++R WK +  LPAR L + GMGFEVLGK  YLLGG GW E AT+
Sbjct: 68  D-KYGKIWFYVVDPNESQRRWKCVPGLPARALNKMGMGFEVLGKKVYLLGGGGWLE-ATN 125

Query: 137 EVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLG----DTHSWDVYDPRTNNW 192
           E +CYD S N+WT  A +STAR    C V + KIY IGGL     D +SWD++ PRTN+W
Sbjct: 126 EAFCYDVSRNSWTQVASLSTARYDSACQVYDGKIYAIGGLASTSNDPYSWDIFYPRTNSW 185

Query: 193 KLHTEPNIFTEIEDSFVMDGKIYIRCSASAAT--SHVCALVYEPSTDSWLHADANMASGW 250
           + H+      E+ED  V+DGKIYIRC ASA+T  S   A+VYEPS+  W  ADA+M SGW
Sbjct: 186 EFHSNDCAVPEVEDCVVLDGKIYIRCQASASTMSSPFYAVVYEPSSGMWQRADADMVSGW 245

Query: 251 RGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIG 310
           +GPA+VVD  LYVLDQSSGTKLMMWQK+ REW  V RLSTLLT+PPC+L AIGK +F++G
Sbjct: 246 QGPAIVVDGTLYVLDQSSGTKLMMWQKDKREWVVVKRLSTLLTKPPCQLAAIGKKLFIVG 305

Query: 311 KGCSAVVIDVGNIGNIGGIMVSSSIPKLNDNDDIISCKCLAI 352
           +G S VV+D    G++ G MV +SIP L   D +++CKC  +
Sbjct: 306 RGLSTVVLDTSQTGSVEGAMVGTSIPGLITADKVLNCKCQTL 347

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520416|ref|XP_003528858.1| PREDICTED: F-box/kelch-repeat protein SKIP4-like [Glycine max]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/360 (53%), Positives = 250/360 (69%), Gaps = 9/360 (2%)

Query: 1   MDRLVSRSNSNPSV----VPLISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEE 56
           +D+    SNS+  V     P+I GLPDDI+L CLAR+PR+YH+VLKCVS RWR L+ SEE
Sbjct: 4   VDKGKESSNSDNEVEATNSPIICGLPDDISLMCLARIPRKYHSVLKCVSKRWRDLICSEE 63

Query: 57  WCAYRRKHNLDETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFE 116
           W  YRRKH LDETWIYA C+D K + + CYVLDP    R WK++  LP    +R+GMGFE
Sbjct: 64  WICYRRKHKLDETWIYALCKD-KSKEIFCYVLDPTDPIRYWKLVGGLPPHISKREGMGFE 122

Query: 117 VLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGL 176
           VLG   +LLGGC     +T+EVY YDAS N W  A  +STAR  F C VL++K+Y IGG 
Sbjct: 123 VLGNKLFLLGGCREFLGSTNEVYSYDASSNCWAQATSLSTARYNFACEVLDEKLYVIGGS 182

Query: 177 GDT---HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYE 233
           G     HSW+ +DP TN W   T+P I +EI+ S V+DG IY+RC+   A   V ++VY+
Sbjct: 183 GSNSSDHSWETFDPLTNCWTSQTDPKIVSEIKHSVVLDGNIYVRCARFCANPRVFSVVYK 242

Query: 234 PSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSG-TKLMMWQKESREWSPVGRLSTLL 292
           PS+ +W +AD +M SGW GP VVVD  LYVLD S G T+LM+  KE REW PVGRL  L 
Sbjct: 243 PSSGTWQYADDDMVSGWTGPVVVVDGTLYVLDHSLGRTRLMISLKEGREWIPVGRLLPLH 302

Query: 293 TRPPCKLVAIGKTIFVIGKGCSAVVIDVGNIGNIGGIMVSSSIPKLNDNDDIISCKCLAI 352
           TRPP +LVA+GK+IFV+G+  S VV+DVG++GN   ++V S+IP L  + +++S KCL+I
Sbjct: 303 TRPPFQLVAVGKSIFVVGRVLSTVVVDVGDLGNEDQVIVGSAIPGLLFDVNVLSVKCLSI 362

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26453288|dbj|BAC43717.1| putative SKP1 interacting partner 4 SKIP4 [Arabidopsis thaliana]

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 192/352 (54%), Positives = 242/352 (68%), Gaps = 14/352 (3%)

Query: 9   NSNPSVVPLISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDE 68
            SN + + LISG+PDDI+  CLARVPR YH  +KCVS RWR  + S+E C YR + NL E
Sbjct: 13  QSNETQIALISGVPDDISKSCLARVPREYHMAMKCVSRRWRDFVCSDEMCDYRNEFNLAE 72

Query: 69  TWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGC 128
           +WIYA CRD     V  ++L+P S+RRSWK I++ P   +R +GMGF VLGK  ++LGGC
Sbjct: 73  SWIYALCRDIS-GGVFLHMLNPFSSRRSWKRINDYPYIPMR-EGMGFAVLGKRLFVLGGC 130

Query: 129 GWSEDATSEVYCYDASMNTWTDAAP-MSTARCYFPCGVLNQKIYCIGGLG----DTHSWD 183
           GW EDAT E+YCYDA+MNTW D  P +ST RCYF C  L+ KI  IGGLG       +WD
Sbjct: 131 GWLEDATDEIYCYDAAMNTWFDVVPPLSTKRCYFACETLDGKIIAIGGLGLNPNAKRTWD 190

Query: 184 VYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHAD 243
           +YDP T   K  ++ NI  E+EDSFVMDG+IYIR     +++ V    Y  S+  W   D
Sbjct: 191 IYDPLTRTCKSCSDVNIVPEMEDSFVMDGRIYIRGGVGGSSTAV----YSASSGIWERMD 246

Query: 244 ANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIG 303
            +MASGWRGPAVVV   LYVLDQ+ G KL MW K++R W  +G+LS L+ + PC+LV+IG
Sbjct: 247 DDMASGWRGPAVVVAGDLYVLDQTFGAKLTMWCKDTRMWIHIGKLSQLVMKQPCRLVSIG 306

Query: 304 KTIFVIGKGCSAVVIDVGNI--GNIGGIMVSSSIPKLNDND-DIISCKCLAI 352
            +IFVIGK CS VVIDV N+    + G+MV SSIPK  D+D D+ISCK +AI
Sbjct: 307 NSIFVIGKDCSTVVIDVENVRKSKMNGVMVCSSIPKTWDDDIDVISCKSVAI 358

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411974|ref|NP_567112.1| SKP1 interacting partner 4 [Arabidopsis thaliana] gi|75182826|sp|Q9M2C9.1|SKIP4_ARATH RecName: Full=F-box/kelch-repeat protein SKIP4; AltName: Full=SKP1-interacting partner 4 gi|6850902|emb|CAB71065.1| putative protein [Arabidopsis thaliana] gi|94442421|gb|ABF18998.1| At3g61350 [Arabidopsis thaliana] gi|332646668|gb|AEE80189.1| SKP1 interacting partner 4 [Arabidopsis thaliana]

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 192/352 (54%), Positives = 242/352 (68%), Gaps = 14/352 (3%)

Query: 9   NSNPSVVPLISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDE 68
            SN + + LISG+PDDI+  CLARVPR YH  +KCVS RWR  + S+E C YR + NL E
Sbjct: 13  QSNETQIALISGVPDDISKSCLARVPREYHMAMKCVSRRWRDFVCSDEMCDYRNEFNLAE 72

Query: 69  TWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGC 128
           +WIYA CRD     V  ++L+P S+RRSWK I++ P   +R +GMGF VLGK  ++LGGC
Sbjct: 73  SWIYALCRDIS-GGVFLHMLNPFSSRRSWKRINDYPYIPMR-EGMGFAVLGKRLFVLGGC 130

Query: 129 GWSEDATSEVYCYDASMNTWTDAAP-MSTARCYFPCGVLNQKIYCIGGLG----DTHSWD 183
           GW EDAT E+YCYDA+MNTW D  P +ST RCYF C  L+ KI  IGGLG       +WD
Sbjct: 131 GWLEDATDEIYCYDAAMNTWFDVVPPLSTKRCYFACETLDGKIIAIGGLGLNPNAKRTWD 190

Query: 184 VYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHAD 243
           +YDP T   K  ++ NI  E+EDSFVMDG+IYIR     +++ V    Y  S+  W   D
Sbjct: 191 IYDPLTRTCKSCSDVNIVPEMEDSFVMDGRIYIRGGVGGSSTAV----YSASSGIWERMD 246

Query: 244 ANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIG 303
            +MASGWRGPAVVV   LYVLDQ+ G KL MW K++R W  +G+LS L+ + PC+LV+IG
Sbjct: 247 DDMASGWRGPAVVVAGDLYVLDQTFGAKLTMWCKDTRMWIHIGKLSQLVMKQPCRLVSIG 306

Query: 304 KTIFVIGKGCSAVVIDVGNI--GNIGGIMVSSSIPKLNDND-DIISCKCLAI 352
            +IFVIGK CS VVIDV N+    + G+MV SSIPK  D+D D+ISCK +AI
Sbjct: 307 NSIFVIGKDCSTVVIDVENVRKNKMNGVMVCSSIPKTWDDDIDVISCKSVAI 358

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
TAIR|locus:2098926	358	SKIP4 "AT3G61350" [Arabidopsis	0.934	0.918	0.498	3.4e-84
TAIR|locus:2035696	434	AT1G55270 "AT1G55270" [Arabido	0.741	0.601	0.294	1.5e-26
TAIR|locus:2198304	398	AT1G30090 "AT1G30090" [Arabido	0.815	0.721	0.267	1.4e-21
TAIR|locus:2032855	383	AT1G16250 "AT1G16250" [Arabido	0.477	0.438	0.323	3.8e-18
TAIR|locus:2008773	376	AT1G67480 "AT1G67480" [Arabido	0.605	0.566	0.315	1.5e-17
TAIR|locus:2052596	372	SKIP6 "AT2G21950" [Arabidopsis	0.636	0.602	0.290	5.5e-17
TAIR|locus:2136333	365	AT4G39290 "AT4G39290" [Arabido	0.639	0.616	0.310	7.1e-17
TAIR|locus:2080198	378	AT3G43710 "AT3G43710" [Arabido	0.789	0.735	0.267	1.3e-16
TAIR|locus:2046683	372	AFR "ATTENUATED FAR-RED RESPON	0.818	0.774	0.236	3.6e-16
TAIR|locus:2124221	293	AT4G34170 "AT4G34170" [Arabido	0.531	0.638	0.252	2.2e-15

TAIR|locus:2098926 SKIP4 "AT3G61350" [Arabidopsis thaliana (taxid:3702)]

 Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
 Identities = 171/343 (49%), Positives = 216/343 (62%)

Query:    18 ISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDETWIYAFCRD 77
             ISG+PDDI+  CLARVPR YH  +KCVS RWR  + S+E C YR + NL E+WIYA CRD
Sbjct:    22 ISGVPDDISKSCLARVPREYHMAMKCVSRRWRDFVCSDEMCDYRNEFNLAESWIYALCRD 81

Query:    78 NKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSE 137
                  V  ++L+P S+RRSWK I++ P   +R +GMGF VLGK  ++LGGCGW EDAT E
Sbjct:    82 IS-GGVFLHMLNPFSSRRSWKRINDYPYIPMR-EGMGFAVLGKRLFVLGGCGWLEDATDE 139

Query:   138 VYCYDASMNTWTDAAP-MSTARCYFPCGVLNQKIYCIGGLG----DTHSWDVYDPRTNNW 192
             +YCYDA+MNTW D  P +ST RCYF C  L+ KI  IGGLG       +WD+YDP T   
Sbjct:   140 IYCYDAAMNTWFDVVPPLSTKRCYFACETLDGKIIAIGGLGLNPNAKRTWDIYDPLTRTC 199

Query:   193 KLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRG 252
             K  ++ NI  E+EDSFVMDG+IYIR     +++     VY  S+  W   D +MASGWRG
Sbjct:   200 KSCSDVNIVPEMEDSFVMDGRIYIRGGVGGSST----AVYSASSGIWERMDDDMASGWRG 255

Query:   253 PXXXXXXXXXXXXQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKG 312
             P            Q+ G KL MW K++R W  +G+LS L+ + PC+LV+IG +IFVIGK 
Sbjct:   256 PAVVVAGDLYVLDQTFGAKLTMWCKDTRMWIHIGKLSQLVMKQPCRLVSIGNSIFVIGKD 315

Query:   313 CSAXXXXXXXXXXXXXXXXS--SSIPKLNDND-DIISCKCLAI 352
             CS                    SSIPK  D+D D+ISCK +AI
Sbjct:   316 CSTVVIDVENVRKNKMNGVMVCSSIPKTWDDDIDVISCKSVAI 358

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009409 "response to cold" evidence=IEP

TAIR|locus:2035696 AT1G55270 "AT1G55270" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 80/272 (29%), Positives = 117/272 (43%)

Query:    18 ISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDETWIYAFCRD 77
             + GLPDD+A+ CL RVPR  H  L+ V  RW  L     + + R+   + E W+Y F RD
Sbjct:    79 LPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRKLLGMSEEWVYVFKRD 138

Query:    78 NKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-GKNAYLLGGCGWSEDATS 136
                 ++     DP S  + W+ +  +P       G G  VL G + YL GG      +  
Sbjct:   139 RD-GKISWNTFDPIS--QLWQPLPPVPREYSEAVGFGCAVLSGCHLYLFGGKDPLRGSMR 195

Query:   137 EVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGG----LGDT-HSWDVYDPRTNN 191
              V  Y+A  N W  A  M   R +F C V+N  +Y  GG    +  T  S +VYDP  N 
Sbjct:   196 RVIFYNARTNKWHRAPDMLRKRHFFGCCVINNCLYVAGGECEGIQRTLRSAEVYDPNKNR 255

Query:   192 WKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWR 251
             W    + +         V D K +++   S     V +  Y+P  +SW      M +GWR
Sbjct:   256 WSFIADMSTAMVPLIGVVYDKKWFLKGLGSHQL--VMSEAYDPEVNSWSPVSDGMVAGWR 313

Query:   252 GPXXXXXXXXXXXXQSSGTKLMMWQKESREWS 283
              P               G KL ++ + +  W+
Sbjct:   314 NPCTSLNGRLYGLDCRDGCKLRVFDESTDSWN 345

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2198304 AT1G30090 "AT1G30090" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 1.4e-21, P = 1.4e-21
 Identities = 83/310 (26%), Positives = 128/310 (41%)

Query:    18 ISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEE-WCAYRRKHNLDETWIYAFCR 76
             I GLPDD+AL CL RVP + H   K V  RW  L  ++E + A R++    + W++    
Sbjct:    54 IPGLPDDVALNCLLRVPVQSHVSSKSVCKRWHLLFGTKETFFAKRKEFGFKDPWLFVVGF 113

Query:    77 DNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGM--GFEVLGK----NAYLLGGCGW 130
                  ++   VLD  +   +W   HE+PA   R K    GF  +        ++ GG   
Sbjct:   114 SRCTGKIQWKVLDLRNL--TW---HEIPAMPCRDKVCPHGFRSVSMPREGTMFVCGGMVS 168

Query:   131 SEDATSE-VYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGG-LGDTHSWD---VY 185
               D   + V  YD   N WT    M TAR +F  GV++  IY  GG   D +  D   V 
Sbjct:   169 DSDCPLDLVLKYDMVKNHWTVTNKMITARSFFASGVIDGMIYAAGGNAADLYELDCAEVL 228

Query:   186 DPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVC--ALVYEPSTDSWLHAD 243
             +P   NW+  +         D+ V++GK+ +          V     VY+P TD W    
Sbjct:   229 NPLDGNWRPVSNMVAHMASYDTAVLNGKLLVT-EGWLWPFFVSPRGQVYDPRTDQWETMS 287

Query:   244 ANMASGWRGPXXXXXXXXXXXXQSSGTKLMMWQKESREWSPVG--RLSTLLTRPPCKLVA 301
               +  GW G             +    K+ ++   +  W  +    L   + RP   +  
Sbjct:   288 MGLREGWTGTSVVIYDRLFIVSELERMKMKVYDPVTDSWETINGPELPEQICRP-FAVNC 346

Query:   302 IGKTIFVIGK 311
              G  ++V+G+
Sbjct:   347 YGNRVYVVGR 356

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2032855 AT1G16250 "AT1G16250" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 3.8e-18, P = 3.8e-18
 Identities = 63/195 (32%), Positives = 92/195 (47%)

Query:    18 ISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDETWIYAFCRD 77
             I GLPDD+AL C+A++   YH VL+CVS  WR L+   ++  Y+ ++    +W++     
Sbjct:     9 IPGLPDDLALRCIAKLSHGYHGVLECVSRGWRDLVRGADYSCYKARNGWSGSWLFVLTER 68

Query:    78 NKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGM---GFE-VLGKNAYL-LGGC---- 128
             +K + V  Y  DP + R  W   H LP     + G    GF  V   N  L +GGC    
Sbjct:    69 SKNQWVA-Y--DPEADR--W---HPLPRTRAVQDGWHHSGFACVCVSNCLLVIGGCYAPS 120

Query:   129 --GWSED---ATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSW- 182
                +       T +V  +D     W   A M T R +F C  ++ K+Y  GG   THS  
Sbjct:   121 VSSFPHQKPVVTKDVMRFDPFKKQWKMVASMRTPRTHFACTSVSGKVYVAGGRNLTHSRG 180

Query:   183 ----DVYDPRTNNWK 193
                 +VYDP  + W+
Sbjct:   181 IPSAEVYDPVADRWE 195

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2008773 AT1G67480 "AT1G67480" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.5e-17, P = 1.5e-17
 Identities = 78/247 (31%), Positives = 111/247 (44%)

Query:    18 ISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDETWIYAFC-- 75
             I GLPDD+A  CLA VPR     +  V  +WR ++ S+E+   RR   + E W+Y     
Sbjct:    40 IPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITVRRLAGMLEEWLYVLTMN 99

Query:    76 ---RDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL---GKNAYLLGGC- 128
                +DN+ E     V+D    + S       PA+T      GF+V+   GK   + G C 
Sbjct:   100 AGGKDNRWE-----VMDCLGQKLSSLPPMPGPAKT------GFKVVVVDGKLLVIAGCCM 148

Query:   129 -GWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLG----DTHSWD 183
                S  A+++VY YD  +N+W+  A +  AR  F C  +N  +Y +GG G       S +
Sbjct:   149 INGSLVASADVYQYDTCLNSWSRLADLEVARYDFACAEVNGHVYVVGGHGVDGESLSSAE 208

Query:   184 VYDPRTNNWKLHTE---PNIFTEIEDSFVMDGKIYIRCSASAATSHVCAL--VYEPSTDS 238
             VYDP T  W        P  +     +F  +GK+Y+    S  T     L  VY     S
Sbjct:   209 VYDPETCTWTFIESLRRPR-WGCFASAF--NGKLYVMGGRSNFTIGNSKLLDVYNTQCGS 265

Query:   239 WLHADAN 245
             W H   N
Sbjct:   266 W-HGSKN 271

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2052596 SKIP6 "AT2G21950" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 5.5e-17, P = 5.5e-17
 Identities = 71/244 (29%), Positives = 110/244 (45%)

Query:    21 LPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDETWIYAFCRDNKL 80
             L +D+AL CLARVPR ++ +L  VS  +R L  S    A R      E  +Y   R    
Sbjct:    24 LSEDVALSCLARVPRCHYPILSLVSKTFRSLPTSPLLYATRALVGATENILYVAIRIPPE 83

Query:    81 ERVCCYVLDPNSTRRSW--KMIHELPA-RTLRRKGMGFEVLGKNAYLLGGCGWSEDATSE 137
                C + L   +   S   KM+  +P+  +    G  + V+    Y++GG    +  +S 
Sbjct:    84 SGACWFTLLHRTLSNSTNSKMLVPIPSCPSPSLVGSAYVVVDSEIYVIGG-SIRDVPSSS 142

Query:   138 VYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGL-----GDTHSW-DVYDPRTNN 191
             V+  D   +TW   + M   R +   GV++ KIY IGG        + +W +++D +T  
Sbjct:   143 VWVLDCRFHTWRRVSNMRVGREFAAAGVIDGKIYVIGGCVVDNWARSINWAEMFDIKTQT 202

Query:   192 WKLHTEPNIFTE---IEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMAS 248
             W+    P +      +  S VM+GK+Y    A A  + V   VYEP    W   +  +  
Sbjct:   203 WEPVASPGMEVREKWMHASAVMEGKVY----AMADRNGV---VYEPKEKKWEMPEKRLDL 255

Query:   249 GWRG 252
             GWRG
Sbjct:   256 GWRG 259

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2136333 AT4G39290 "AT4G39290" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 7.1e-17, P = 7.1e-17
 Identities = 76/245 (31%), Positives = 113/245 (46%)

Query:    19 SGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDETWIYAFC--- 75
             S LPDD+ L CLARV + Y+  L  VS ++R L+ S E    R       + +Y  C   
Sbjct:    14 SMLPDDLVLNCLARVSKVYYPSLSFVSKKFRSLIASTELQELRSFLGCTSSGLYV-CLRF 72

Query:    76 RDNKLERVCCYVLDP--NSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSED 133
             R N   R  C+ L    +S+ +    I  L +    R G+    +G + Y +GG   +  
Sbjct:    73 RTNTDYRQICFTLRQKISSSAKILVPISSLDSPFDYRSGV--VAVGSDIYAIGGRNLNNS 130

Query:   134 ATSEVYCYDASMNTWTDAAPMSTARCYFP--CGVLNQKIYCIGGLG--DTHSW-DVYDPR 188
             A+S+V   D   +TW +A  M  AR  FP  C VLN KIY IGG    D+ +W +V+D +
Sbjct:   131 ASSKVMVMDCRSHTWREAPSMRVARDDFPSTC-VLNGKIYVIGGCKNLDSTNWIEVFDTK 189

Query:   189 TNNWKLHTEPNIFTEIEDSF---VMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADAN 245
             T  W+    PN   E+   F   ++  K  I  S S   +    + YE     W     +
Sbjct:   190 TQTWEFLQIPN--EEVCRGFNYKIVGYKEAIHVS-SLENNRATFMTYEIHKGRWREPHLS 246

Query:   246 MASGW 250
             ++ G+
Sbjct:   247 LSHGF 251

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080198 AT3G43710 "AT3G43710" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 82/306 (26%), Positives = 132/306 (43%)

Query:    18 ISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDETWIYAFCR- 76
             I  LPDD+ L CLARVPR Y+ +L  VS R+R  L S E    R      E++++   R 
Sbjct:    26 IEMLPDDLVLSCLARVPRMYYPILSLVSKRFRSFLTSTELYQTRNLLGSTESFLFVCLRI 85

Query:    77 --DNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDA 134
               D+   R+      PNS  +   M+  L   ++ +      ++G N Y++GG   + +A
Sbjct:    86 VNDSNPLRLFTLCRRPNSLTKV--MVPILSPDSIPKFLPDVVLVGSNIYVIGGL-INNNA 142

Query:   135 TSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLG--DTHSW-DVYDPRTNN 191
             + +V   D   +TW +A     AR      VL+ KIY  GG    D   W +V+D +T +
Sbjct:   143 SHKVMVMDCRSHTWREAQGTCVARVSPSACVLDGKIYVAGGCKNLDATMWMEVFDTKTES 202

Query:   192 WKLHTEPN--IFTEIE--DSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMA 247
             W+  + P   I  ++   +S   DG +Y+    +         +YE     W     +M+
Sbjct:   203 WEFVSSPGEEICRDLTSCESIGYDGNVYVESMKTYG-------LYELHKGRWREGQYSMS 255

Query:   248 SGWRGPXXXXXXXXXXXXQSSGTKLMMW-QKESREWSPVGRLSTL--LTRP--PCKLVAI 302
                RG               S + ++ W   E++ W+ +  L  L  +T    P K V  
Sbjct:   256 ---RGGSLSSQCVIDNVLYRSWSYMVEWYDSENKLWNSLKGLEKLFIVTNQYVPTKCVNY 312

Query:   303 GKTIFV 308
             G  + V
Sbjct:   313 GGKLAV 318

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2046683 AFR "ATTENUATED FAR-RED RESPONSE" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 3.6e-16, P = 3.6e-16
 Identities = 73/309 (23%), Positives = 125/309 (40%)

Query:    18 ISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDETWIYAFCRD 77
             ISGLP+DIA  CL R+P  YHA+ + VSS W   + +  +   ++  ++   +++ F  +
Sbjct:    29 ISGLPNDIAELCLLRLPYPYHALYRSVSSSWNKTITNPRFLFSKQSLSISSPYLFVFAFN 88

Query:    78 NKLERVCCYVLDPNSTRRSWKMIHELP---ARTLRRKGMGFEVLGKNA--YLLGGCGWSE 132
                 R+    LD  S R  W ++  +P    +      +    + +    ++LGG G   
Sbjct:    89 KSTARIQWQSLDLASGR--WFVLPPMPNSFTKISSPHALSCASMPRQGKLFVLGG-G--- 142

Query:   133 DATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGL----GD-THSWDVYDP 187
             D       Y A  N W+  +PM + R YF  G +N KI  +GG     G+ T   + YDP
Sbjct:   143 DVNRSAVVYTALTNRWSCISPMMSPRTYFVSGNVNGKIMAVGGSVGGNGEATTEVESYDP 202

Query:   188 RTNNWKLHTE-PNIFTEIEDSFVMDGKIYIRCS-ASAATSHVCALVYEPSTDSWLHADAN 245
               + W +  + P +  +  DS V+  ++ +    A          VY+    +W      
Sbjct:   203 DNDTWTVVKKLPMVLAKY-DSAVIGKEMCVTEGWAWPFMFPPMGQVYDSDEGTWREMSGG 261

Query:   246 MASGWRGPXXXXXXXXXXXXQSSGTKLMMWQKESREWSPVG--RLSTLLTRPPCKLVAIG 303
             M  GW G             +     + ++  +   W  V   +L     R P  +    
Sbjct:   262 MKEGWTGVSVVIRDRLFVISEHGDFPMKVYCSDDDTWRYVSGEKLQGEKMRRPFAVTGAD 321

Query:   304 KTIFVIGKG 312
               +FV+  G
Sbjct:   322 DRVFVVASG 330

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0009585 "red, far-red light phototransduction" evidence=IMP

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2124221 AT4G34170 "AT4G34170" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
 Identities = 51/202 (25%), Positives = 84/202 (41%)

Query:   114 GFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCI 173
             G  V+G N   +GG G   +  S V   D+  +TW +A  M   R +     L+ KIY +
Sbjct:    87 GIAVVGPNIDAIGG-GIKSNTLSSVMVMDSRSHTWREAPSMRVPRMFPSVCTLDGKIYVM 145

Query:   174 GGLG--DTHSW-DVYDPRTNNWKLHTEPN--IFT-EIEDSFVMDGKIYIRCSASAATSHV 227
             GG    D+ +W +V+D +T  W+    P+  IF     +S   +G +Y+       T   
Sbjct:   146 GGCDNLDSTNWMEVFDTKTQTWEFLQIPSEEIFGGSAYESVRYEGTVYVWSEKKDVT--- 202

Query:   228 CALVYEPSTDSWLHADANMASGWRGPXXXXXXXXXXXXQSSGTKLMMWQKESREWSPVGR 287
                 Y+     W  AD + A+GW  P                 K+  +  + R W+P+  
Sbjct:   203 ----YKLHEGRWSAADMS-ANGWGWPGSSYCVIENVLYSCFVHKIRWYDPKERVWTPLKG 257

Query:   288 LSTLLTRPPCKLVAIGKTIFVI 309
             L +L      KL   G+ + ++
Sbjct:   258 LPSLPCNGHVKLADYGEKMVIL 279

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M2C9	SKIP4_ARATH	No assigned EC number	0.5454	0.9602	0.9441	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00026855001 SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (359 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	352
smart00612	47	smart00612, Kelch, Kelch domain	3e-06
PRK14131	376	PRK14131, PRK14131, N-acetylneuraminic acid mutaro	3e-06
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	5e-06
TIGR03547	346	TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family	9e-06
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	2e-05
pfam01344	46	pfam01344, Kelch_1, Kelch motif	4e-05
pfam00646	48	pfam00646, F-box, F-box domain	6e-04
pfam13418	49	pfam13418, Kelch_4, Galactose oxidase, central dom	6e-04
pfam01344	46	pfam01344, Kelch_1, Kelch motif	7e-04
pfam13415	48	pfam13415, Kelch_3, Galactose oxidase, central dom	0.002

>gnl|CDD|128874 smart00612, Kelch, Kelch domain

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 123 YLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLN 167
           Y++GG          V  YD   N WT    M T R      V+N
Sbjct: 3   YVVGGF-DGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVIN 46

Length = 47

>gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 50/226 (22%), Positives = 82/226 (36%), Gaps = 43/226 (19%)

Query: 86  YVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATS-----EVYC 140
           Y LD N+  + W  I   P     R+      +    Y+ GG G +    S     +VY 
Sbjct: 53  YKLDLNAPSKGWTKIAAFP--GGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYK 110

Query: 141 YDASMNTWTDAAPMSTARCYFPCGVL--------NQKIYCIGGLGDTHSWDVY--DPRTN 190
           YD   N+W      S      P G+         N K Y  GG+ + + +D Y  D    
Sbjct: 111 YDPKTNSWQKLDTRS------PVGLAGHVAVSLHNGKAYITGGV-NKNIFDGYFEDLAAA 163

Query: 191 NWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGW 250
                 +  I    +  F    + Y           V  L Y+PST+ W +A  +   G 
Sbjct: 164 GKDKTPKDKI---NDAYFDKKPEDYF------FNKEV--LSYDPSTNQWKNAGESPFLGT 212

Query: 251 RGPAVVV-DDALYVLD-------QSSGTKLMMWQKESREWSPVGRL 288
            G AVV+  + L++++       ++   K   +   + +W  +  L
Sbjct: 213 AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDL 258

Length = 376

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 34/157 (21%), Positives = 63/157 (40%), Gaps = 8/157 (5%)

Query: 114 GFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCI 173
           G  VL    Y +GG   +  + + V  YD    +W     +   R      V N +IY I
Sbjct: 289 GSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVI 348

Query: 174 GGLGD---THSWDVYDPRTNNWKLHTEPNIFTEIEDSFV--MDGKIYIRCSASAATSHVC 228
           GG+ +    ++ + + P  + W+   EP +     +  V  ++  IY+    S     + 
Sbjct: 349 GGIYNSISLNTVESWKPGESKWRE--EPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLK 406

Query: 229 AL-VYEPSTDSWLHADANMASGWRGPAVVVDDALYVL 264
            +  +  +T+ W        S + G A+  D  +YV+
Sbjct: 407 TVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVI 443

Length = 534

>gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 48/248 (19%), Positives = 88/248 (35%), Gaps = 38/248 (15%)

Query: 86  YVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATS-----EVYC 140
           Y LD     + W+ I + P     R       +    Y+ GG G +    S     +VY 
Sbjct: 32  YKLDLKKPSKGWQKIADFP--GGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYR 89

Query: 141 YDASMNTWTD---AAP--MSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLH 195
           YD   N+W      +P  +  A       + N + Y  GG+ + + +D Y    +     
Sbjct: 90  YDPKKNSWQKLDTRSPVGLLGASG---FSLHNGQAYFTGGV-NKNIFDGYFADLSAADKD 145

Query: 196 TEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAV 255
           +EP    ++  ++                 +V  L Y+PST+ W +   N   G  G A+
Sbjct: 146 SEPK--DKLIAAY-FSQPP----EDYFWNKNV--LSYDPSTNQWRNLGENPFLGTAGSAI 196

Query: 256 VV-DDALYVLD-------QSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVA-----I 302
           V   + L +++       +++  K  ++     EW+ +  L    +     L        
Sbjct: 197 VHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGIS 256

Query: 303 GKTIFVIG 310
              + V G
Sbjct: 257 NGVLLVAG 264

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 13/139 (9%)

Query: 77  DNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDAT- 135
           D  L+ V C+ L+ N     W     LP   +   G          Y++GG  + ++   
Sbjct: 402 DELLKTVECFSLNTNK----WSKGSPLP---ISHYGGCAIYHDGKIYVIGGISYIDNIKV 454

Query: 136 -SEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGD---THSWDVYDPRTNN 191
            + V  Y+   N WT+ + ++  R      + N KIY +GG       +  +VYD +TN 
Sbjct: 455 YNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514

Query: 192 WKL-HTEPNIFTEIEDSFV 209
           W L    P +   +E +  
Sbjct: 515 WTLFCKFPKVIGSLEKNIF 533

Length = 534

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 157 ARCYFPCGVLNQKIYCIGGLGD---THSWDVYDPRTNNWK 193
            R      VL  KIY IGG        S +VYDP TN W 
Sbjct: 1   PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWS 40

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 16 PLISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEE 56
            +  LPDD+ L  L+R+  +    L  VS RWR L+ S +
Sbjct: 1  FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLK 41

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 123 YLLGGCGWSEDATSEVYCYDASMNTWTDAAPM 154
           YL GG        S+V+ +D S NTWT    +
Sbjct: 16  YLFGGENEDGSVLSDVWVFDLSTNTWTRLPSL 47

Length = 49

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 36.5 bits (85), Expect = 7e-04
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 109 RRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMS 155
            R G G  VLG   Y++GG      + S V  YD   NTW+    M 
Sbjct: 1   PRSGAGVVVLGGKIYVIGGYD-GGQSLSSVEVYDPETNTWSKLPSMP 46

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 11/43 (25%), Positives = 17/43 (39%)

Query: 119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYF 161
           G   Y+ GG G      ++++ YD   NTW     +   R   
Sbjct: 1   GGKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGH 43

Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	352
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PLN02153	341	epithiospecifier protein	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
PLN02193	470	nitrile-specifier protein	100.0
PLN02193	470	nitrile-specifier protein	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
PHA03098	534	kelch-like protein; Provisional	100.0
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	100.0
PLN02153	341	epithiospecifier protein	100.0
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	100.0
PHA02790	480	Kelch-like protein; Provisional	100.0
PHA03098	534	kelch-like protein; Provisional	100.0
PHA02790	480	Kelch-like protein; Provisional	100.0
KOG4693	392	consensus Uncharacterized conserved protein, conta	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	100.0
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.98
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.96
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.94
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.93
KOG1230	521	consensus Protein containing repeated kelch motifs	99.91
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.9
KOG1230	521	consensus Protein containing repeated kelch motifs	99.9
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.8
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.8
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.69
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	99.54
PF13964	50	Kelch_6: Kelch motif	99.28
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	99.25
PF13964	50	Kelch_6: Kelch motif	99.15
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	99.08
PF13415	49	Kelch_3: Galactose oxidase, central domain	99.02
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	99.0
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.96
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.85
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.83
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.81
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	98.8
smart00612	47	Kelch Kelch domain.	98.74
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.74
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.66
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.6
smart00612	47	Kelch Kelch domain.	98.54
PLN02772	398	guanylate kinase	98.46
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.35
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	98.27
PF13854	42	Kelch_5: Kelch motif	98.25
PLN02772	398	guanylate kinase	98.22
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.14
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.13
PF13854	42	Kelch_5: Kelch motif	98.12
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	98.04
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.02
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.02
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	97.87
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.85
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	97.83
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.77
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.54
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.53
PF03089	337	RAG2: Recombination activating protein 2; InterPro	97.49
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.45
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.44
PF12768	281	Rax2: Cortical protein marker for cell polarity	97.32
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	97.22
PRK13684	334	Ycf48-like protein; Provisional	97.08
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	96.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	96.87
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.83
PRK04792	448	tolB translocation protein TolB; Provisional	96.83
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	96.72
KOG2055	514	consensus WD40 repeat protein [General function pr	96.61
PF12768	281	Rax2: Cortical protein marker for cell polarity	96.58
KOG2055	514	consensus WD40 repeat protein [General function pr	96.57
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	96.57
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	96.53
PRK13684	334	Ycf48-like protein; Provisional	96.53
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	96.51
PF09910	339	DUF2139: Uncharacterized protein conserved in arch	96.49
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	96.46
PF03089	337	RAG2: Recombination activating protein 2; InterPro	96.32
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	96.29
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	96.26
PRK00178	430	tolB translocation protein TolB; Provisional	96.22
PRK04792	448	tolB translocation protein TolB; Provisional	96.22
PRK11028	330	6-phosphogluconolactonase; Provisional	96.19
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.13
PRK11028	330	6-phosphogluconolactonase; Provisional	96.06
PRK04922	433	tolB translocation protein TolB; Provisional	96.01
KOG0310	487	consensus Conserved WD40 repeat-containing protein	95.99
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	95.99
PRK00178	430	tolB translocation protein TolB; Provisional	95.91
PRK05137	435	tolB translocation protein TolB; Provisional	95.88
smart00284	255	OLF Olfactomedin-like domains.	95.86
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	95.84
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	95.78
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	95.73
KOG0310	487	consensus Conserved WD40 repeat-containing protein	95.73
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	95.7
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.62
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.62
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.51
PRK04922	433	tolB translocation protein TolB; Provisional	95.49
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	95.47
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	95.4
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	95.31
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	95.22
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	95.2
PRK04043	419	tolB translocation protein TolB; Provisional	95.09
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	95.04
PLN00181	793	protein SPA1-RELATED; Provisional	95.0
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.72
PRK05137	435	tolB translocation protein TolB; Provisional	94.66
PF12217	367	End_beta_propel: Catalytic beta propeller domain o	94.61
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	94.54
PRK03629	429	tolB translocation protein TolB; Provisional	94.28
PRK03629	429	tolB translocation protein TolB; Provisional	94.23
PRK04043	419	tolB translocation protein TolB; Provisional	94.09
KOG0316	307	consensus Conserved WD40 repeat-containing protein	94.09
KOG0286	343	consensus G-protein beta subunit [General function	94.0
PRK02889	427	tolB translocation protein TolB; Provisional	93.82
KOG0266	456	consensus WD40 repeat-containing protein [General	93.55
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	93.53
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	93.2
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.15
KOG0646	476	consensus WD40 repeat protein [General function pr	93.05
smart00284	255	OLF Olfactomedin-like domains.	92.95
PTZ00421	493	coronin; Provisional	92.89
KOG0649	325	consensus WD40 repeat protein [General function pr	92.87
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	92.64
KOG0316	307	consensus Conserved WD40 repeat-containing protein	92.56
PLN00033	398	photosystem II stability/assembly factor; Provisio	92.48
KOG2997	366	consensus F-box protein FBX9 [General function pre	92.33
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	92.06
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	91.97
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	91.7
PTZ00421	493	coronin; Provisional	91.69
KOG0296	399	consensus Angio-associated migratory cell protein	91.4
COG4946	668	Uncharacterized protein related to the periplasmic	91.29
KOG0315	311	consensus G-protein beta subunit-like protein (con	91.21
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	91.17
PRK02889	427	tolB translocation protein TolB; Provisional	91.14
PTZ00420	568	coronin; Provisional	90.9
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	90.84
COG1520	370	FOG: WD40-like repeat [Function unknown]	90.78
KOG0296	399	consensus Angio-associated migratory cell protein	90.77
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	90.61
COG4447	339	Uncharacterized protein related to plant photosyst	90.54
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	89.97
COG1520	370	FOG: WD40-like repeat [Function unknown]	89.76
KOG0315	311	consensus G-protein beta subunit-like protein (con	89.33
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	89.22
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	89.04
KOG0266	456	consensus WD40 repeat-containing protein [General	88.78
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	88.38
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	88.08
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	87.98
PRK01742	429	tolB translocation protein TolB; Provisional	87.23
KOG2321	703	consensus WD40 repeat protein [General function pr	86.72
COG4946	668	Uncharacterized protein related to the periplasmic	86.69
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	85.06
KOG2106	626	consensus Uncharacterized conserved protein, conta	84.81
KOG0289	506	consensus mRNA splicing factor [General function p	84.4
KOG0278	334	consensus Serine/threonine kinase receptor-associa	84.24
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	84.23
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	83.43
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	83.23
PRK01742	429	tolB translocation protein TolB; Provisional	82.72
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	82.68
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	82.37
PF15525	200	DUF4652: Domain of unknown function (DUF4652)	82.18
PRK10115	686	protease 2; Provisional	82.17
PLN00181	793	protein SPA1-RELATED; Provisional	81.95
KOG3881	412	consensus Uncharacterized conserved protein [Funct	81.53
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	81.3
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	80.28

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=1.4e-42  Score=327.48  Aligned_cols=258  Identities=24%  Similarity=0.386  Sum_probs=230.8

Q ss_pred             CCCCEEEEEEecCC--CCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEEC
Q 045821           66 LDETWIYAFCRDNK--LERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDA  143 (352)
Q Consensus        66 ~~~~~l~~~gg~~~--~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~  143 (352)
                      ...+.|+++||...  .....+..|||  .++.|..+++|+   .+|..+++++++|.||++||.+.....++++++||+
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~--~~~~w~~~a~m~---~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~  356 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDP--KTNEWSSLAPMP---SPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDP  356 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecC--CcCcEeecCCCC---cccccccEEEECCEEEEEccccCCCcccceEEEecC
Confidence            34688999999864  33456889999  999999999999   778899999999999999999843377899999999


Q ss_pred             CCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCC---CceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccC
Q 045821          144 SMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDT---HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSA  220 (352)
Q Consensus       144 ~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~---~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~  220 (352)
                      .+++|..+++|+.+|..+++++++|.||++||.+..   +++|+|||.+++|..+++|+..+..+++++++|+||++||.
T Consensus       357 ~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~  436 (571)
T KOG4441|consen  357 RTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGG  436 (571)
T ss_pred             CCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCc
Confidence            999999999999999999999999999999999865   99999999999999999999988899999999999999998


Q ss_pred             CCCC-CceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCC----CeEEEEeCCCCceEEccCCCCCcCCC
Q 045821          221 SAAT-SHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSG----TKLMMWQKESREWSPVGRLSTLLTRP  295 (352)
Q Consensus       221 ~~~~-~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~----~~v~~yd~~~~~W~~~~~~~~~~~~~  295 (352)
                      .... ....+++|||.+++|+.++++..++....+++.+++||++||+++    ..+.+|||.+++|+.++.++.  .+.
T Consensus       437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~--~rs  514 (571)
T KOG4441|consen  437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS--PRS  514 (571)
T ss_pred             CCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc--ccc
Confidence            8766 667999999999999999987777777778899999999999876    468999999999999988876  588


Q ss_pred             CceEEEeCCEEEEEcCCc------eEEEEEcCCcccccceE
Q 045821          296 PCKLVAIGKTIFVIGKGC------SAVVIDVGNIGNIGGIM  330 (352)
Q Consensus       296 ~~~~~~~~~~i~v~gG~~------~~~~~d~~~~~w~~~~~  330 (352)
                      ..+++..+++||++||.+      .+..||+++++|.....
T Consensus       515 ~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~  555 (571)
T KOG4441|consen  515 AVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE  555 (571)
T ss_pred             cccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence            889999999999999966      35579999999987544

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=1.9e-41  Score=321.20  Aligned_cols=255  Identities=17%  Similarity=0.265  Sum_probs=215.0

Q ss_pred             CEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCee
Q 045821           69 TWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTW  148 (352)
Q Consensus        69 ~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W  148 (352)
                      ..+++.||.........+.||+  .+++|..++++|   .++.+++++++++.||++||.+......+++++||+.+++|
T Consensus       258 ~~l~~~~g~~~~~~~~v~~yd~--~~~~W~~l~~mp---~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W  332 (557)
T PHA02713        258 LCLVCHDTKYNVCNPCILVYNI--NTMEYSVISTIP---NHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIH  332 (557)
T ss_pred             eEEEEecCccccCCCCEEEEeC--CCCeEEECCCCC---ccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeE
Confidence            3455544421111235678999  999999999998   56788899999999999999754334578999999999999


Q ss_pred             EecCCCCCcceeeeeEEECCEEEEEeCCCCC---CceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCC-
Q 045821          149 TDAAPMSTARCYFPCGVLNQKIYCIGGLGDT---HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAAT-  224 (352)
Q Consensus       149 ~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~---~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~-  224 (352)
                      ..+++|+.+|..++++.++++||++||.+..   +++++||+.+++|+.+++|+.++..+++++++|+||++||..... 
T Consensus       333 ~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~  412 (557)
T PHA02713        333 VELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHID  412 (557)
T ss_pred             eeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccc
Confidence            9999999999999999999999999998643   789999999999999999999999999999999999999976421 


Q ss_pred             -----------------CceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCC-----CeEEEEeCCC-Cc
Q 045821          225 -----------------SHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSG-----TKLMMWQKES-RE  281 (352)
Q Consensus       225 -----------------~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~-----~~v~~yd~~~-~~  281 (352)
                                       ....+++|||.+++|+.+++.+..+....+++++|+||++||..+     +.+.+|||++ ++
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~  492 (557)
T PHA02713        413 YTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG  492 (557)
T ss_pred             cccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCC
Confidence                             135799999999999999876666656667889999999999753     3578999999 89


Q ss_pred             eEEccCCCCCcCCCCceEEEeCCEEEEEcCCce---EEEEEcCCcccccceE
Q 045821          282 WSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCS---AVVIDVGNIGNIGGIM  330 (352)
Q Consensus       282 W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~---~~~~d~~~~~w~~~~~  330 (352)
                      |+.++.+|.  .|..+++++++++||++||.+.   +..||+++++|...++
T Consensus       493 W~~~~~m~~--~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~  542 (557)
T PHA02713        493 WELITTTES--RLSALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICH  542 (557)
T ss_pred             eeEccccCc--ccccceeEEECCEEEEEeeecceeehhhcCcccccccchhh
Confidence            999999987  5888999999999999999775   5579999999986444

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=5.5e-39  Score=303.11  Aligned_cols=254  Identities=24%  Similarity=0.400  Sum_probs=216.2

Q ss_pred             ccchhhhhhhhhhcccccChhhHHHHhhCCCC--CCEEEEEEecCC-CC-ceeEEEecCCCCCCCeeEeccCCCcccCCc
Q 045821           36 RYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLD--ETWIYAFCRDNK-LE-RVCCYVLDPNSTRRSWKMIHELPARTLRRK  111 (352)
Q Consensus        36 ~~~~~l~~v~k~W~~l~~s~~~~~~~~~~~~~--~~~l~~~gg~~~-~~-~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~  111 (352)
                      .....+....+.|..+...|   ..|.+++..  ++.||++||.+. .. ....+.|||  .+++|..+++|.   .+|.
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~---~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~--~~~~W~~~a~M~---~~R~  372 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMP---SPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDP--RTNQWTPVAPMN---TKRS  372 (571)
T ss_pred             ceeEEecCCcCcEeecCCCC---cccccccEEEECCEEEEEccccCCCcccceEEEecC--CCCceeccCCcc---Cccc
Confidence            33444455556798886555   445555544  999999999873 33 456899999  999999999999   7899


Q ss_pred             ceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCC----CceEEEeC
Q 045821          112 GMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDT----HSWDVYDP  187 (352)
Q Consensus       112 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~----~~v~~yd~  187 (352)
                      .+++++++|.||++||.++. ...+++++|||.+++|..+++|+.+|+.|++++++++||++||.+..    +++++|||
T Consensus       373 ~~~v~~l~g~iYavGG~dg~-~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP  451 (571)
T KOG4441|consen  373 DFGVAVLDGKLYAVGGFDGE-KSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDP  451 (571)
T ss_pred             cceeEEECCEEEEEeccccc-cccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcC
Confidence            99999999999999999975 77899999999999999999999999999999999999999997654    89999999


Q ss_pred             CCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecC
Q 045821          188 RTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQS  267 (352)
Q Consensus       188 ~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~  267 (352)
                      .|++|+.+++|+.++..+++++++++||++||.++......+++||+.+++|+.+.++...+.....++.+++||++||+
T Consensus       452 ~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~  531 (571)
T KOG4441|consen  452 ETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGF  531 (571)
T ss_pred             CCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecc
Confidence            99999999999999999999999999999999998555568999999999999997666666666678899999999998


Q ss_pred             CC----CeEEEEeCCCCceEEccCCCCCcCCCCceEE
Q 045821          268 SG----TKLMMWQKESREWSPVGRLSTLLTRPPCKLV  300 (352)
Q Consensus       268 ~~----~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~  300 (352)
                      .+    +.+..|||++++|+.... +.. .+...+++
T Consensus       532 ~~~~~l~~ve~ydp~~d~W~~~~~-~~~-~~~~~~~~  566 (571)
T KOG4441|consen  532 DGNNNLNTVECYDPETDTWTEVTE-PES-GRGGAGVA  566 (571)
T ss_pred             cCccccceeEEcCCCCCceeeCCC-ccc-cccCcceE
Confidence            77    689999999999999998 442 34444443

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=6.5e-37  Score=275.92  Aligned_cols=264  Identities=17%  Similarity=0.304  Sum_probs=198.4

Q ss_pred             hhcccccCh-hhHHHHhhCCCC--CCEEEEEEecCCC-C--ceeEEEecCCCCCCCeeEeccCCCccc-CCcceEEEEEC
Q 045821           47 RWRGLLHSE-EWCAYRRKHNLD--ETWIYAFCRDNKL-E--RVCCYVLDPNSTRRSWKMIHELPARTL-RRKGMGFEVLG  119 (352)
Q Consensus        47 ~W~~l~~s~-~~~~~~~~~~~~--~~~l~~~gg~~~~-~--~~~~~~~d~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~  119 (352)
                      .|..+.... ..+.+|..|++.  ++.||++||.... .  ...++.||+  .+++|..++++...+. .+.++++++++
T Consensus         8 ~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~--~~~~W~~~~~~~~~p~~~~~~~~~~~~~   85 (341)
T PLN02153          8 GWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDF--NTHTWSIAPANGDVPRISCLGVRMVAVG   85 (341)
T ss_pred             eEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEEC--CCCEEEEcCccCCCCCCccCceEEEEEC
Confidence            488776532 234456666544  8999999997432 2  236899999  9999999987653212 24478889999


Q ss_pred             CEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCC-----CCcceeeeeEEECCEEEEEeCCCCC---------CceEEE
Q 045821          120 KNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPM-----STARCYFPCGVLNQKIYCIGGLGDT---------HSWDVY  185 (352)
Q Consensus       120 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~-----~~~r~~~~~~~~~~~iyv~gG~~~~---------~~v~~y  185 (352)
                      ++||++||.... ...+++++||+.+++|+.++++     |.+|..|+++.++++|||+||....         +++++|
T Consensus        86 ~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y  164 (341)
T PLN02153         86 TKLYIFGGRDEK-REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY  164 (341)
T ss_pred             CEEEEECCCCCC-CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence            999999998654 4578999999999999999877     7889999999999999999997531         578999


Q ss_pred             eCCCCcEEEecCCC---CcccceeEEEECCEEEEEccCCCC--------CCceEEEEEeCCCCceeecCC---CCCCCCC
Q 045821          186 DPRTNNWKLHTEPN---IFTEIEDSFVMDGKIYIRCSASAA--------TSHVCALVYEPSTDSWLHADA---NMASGWR  251 (352)
Q Consensus       186 d~~t~~W~~~~~~~---~~~~~~~~~~~~g~iyv~GG~~~~--------~~~~~i~~yd~~~~~W~~~~~---~~~~~~~  251 (352)
                      |+.+++|+.++++.   .++..+.+++++++||++||....        ...+.+++||+.+++|++++.   .+..+..
T Consensus       165 d~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~  244 (341)
T PLN02153        165 NIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSV  244 (341)
T ss_pred             ECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcce
Confidence            99999999998653   566667788899999999886421        113589999999999999864   2333334


Q ss_pred             CcEEEECCEEEEEecCC----------C---CeEEEEeCCCCceEEccCC---CCCcCCCC-ceEEEe-CCEEEEEcCCc
Q 045821          252 GPAVVVDDALYVLDQSS----------G---TKLMMWQKESREWSPVGRL---STLLTRPP-CKLVAI-GKTIFVIGKGC  313 (352)
Q Consensus       252 ~~~~~~~~~l~~~gg~~----------~---~~v~~yd~~~~~W~~~~~~---~~~~~~~~-~~~~~~-~~~i~v~gG~~  313 (352)
                      +.+++++++||++||..          +   +++++||+++++|+.+...   +.+..+.. +++++. +++||++||..
T Consensus       245 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~  324 (341)
T PLN02153        245 FAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKL  324 (341)
T ss_pred             eeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcC
Confidence            45678899999999962          1   4899999999999998632   22212322 233333 45899999974

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-37  Score=295.41  Aligned_cols=236  Identities=16%  Similarity=0.212  Sum_probs=198.1

Q ss_pred             hhhhhcccccChhhHHHHhhCC--CCCCEEEEEEecCC--CCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEEC
Q 045821           44 VSSRWRGLLHSEEWCAYRRKHN--LDETWIYAFCRDNK--LERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLG  119 (352)
Q Consensus        44 v~k~W~~l~~s~~~~~~~~~~~--~~~~~l~~~gg~~~--~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  119 (352)
                      ..+.|..+.+.|.   .+..++  ..++.||++||.+.  ......+.|||  .++.|..+++|+   .+|..+++++++
T Consensus       280 ~~~~W~~l~~mp~---~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~--~~n~W~~~~~m~---~~R~~~~~~~~~  351 (557)
T PHA02713        280 NTMEYSVISTIPN---HIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINI--ENKIHVELPPMI---KNRCRFSLAVID  351 (557)
T ss_pred             CCCeEEECCCCCc---cccceEEEEECCEEEEEcCCCCCCCccceEEEEEC--CCCeEeeCCCCc---chhhceeEEEEC
Confidence            3457888755443   333333  33999999999642  22346889999  999999999998   689999999999


Q ss_pred             CEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCC---------------------
Q 045821          120 KNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGD---------------------  178 (352)
Q Consensus       120 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~---------------------  178 (352)
                      ++||++||.++. ...+++++|||.+++|..+++||.+|..+++++++++||++||...                     
T Consensus       352 g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~  430 (557)
T PHA02713        352 DTIYAIGGQNGT-NVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHS  430 (557)
T ss_pred             CEEEEECCcCCC-CCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccc
Confidence            999999998654 4578899999999999999999999999999999999999999752                     


Q ss_pred             CCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCc-eEEEEEeCCC-CceeecCCCCCCCCCCcEEE
Q 045821          179 THSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSH-VCALVYEPST-DSWLHADANMASGWRGPAVV  256 (352)
Q Consensus       179 ~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~-~~i~~yd~~~-~~W~~~~~~~~~~~~~~~~~  256 (352)
                      .+++++|||.+++|+.+++|+.++..+++++++|+||++||..+.... ..+++||+.+ ++|+.+++.+.++....+++
T Consensus       431 ~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~  510 (557)
T PHA02713        431 SNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL  510 (557)
T ss_pred             cceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence            157999999999999999999999989999999999999987643333 3689999999 89999988666666667788


Q ss_pred             ECCEEEEEecCCC-CeEEEEeCCCCceEEccCC
Q 045821          257 VDDALYVLDQSSG-TKLMMWQKESREWSPVGRL  288 (352)
Q Consensus       257 ~~~~l~~~gg~~~-~~v~~yd~~~~~W~~~~~~  288 (352)
                      ++|+||++||+.+ ..+.+||+.+++|+.++..
T Consensus       511 ~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~  543 (557)
T PHA02713        511 HDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQ  543 (557)
T ss_pred             ECCEEEEEeeecceeehhhcCcccccccchhhh
Confidence            9999999999876 5689999999999988744

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=2.6e-35  Score=274.88  Aligned_cols=261  Identities=17%  Similarity=0.264  Sum_probs=207.1

Q ss_pred             CCEEEEEEecCCCC--ceeEEEecCCCCC----CCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCC-CCCeEEE
Q 045821           68 ETWIYAFCRDNKLE--RVCCYVLDPNSTR----RSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSED-ATSEVYC  140 (352)
Q Consensus        68 ~~~l~~~gg~~~~~--~~~~~~~d~~~~~----~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~~  140 (352)
                      ++.|+.++|.....  ..-.+.+++  .+    ++|.++.++...|.+|..|+++.+++.||++||...... ..+++++
T Consensus       120 ~~~ivgf~G~~~~~~~~ig~y~~~~--~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~  197 (470)
T PLN02193        120 GGKIVGFHGRSTDVLHSLGAYISLP--STPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYV  197 (470)
T ss_pred             CCeEEEEeccCCCcEEeeEEEEecC--CChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEE
Confidence            77888888864333  233566676  44    899999875433478999999999999999999754322 3468999


Q ss_pred             EECCCCeeEecCCC---CC-cceeeeeEEECCEEEEEeCCCCC---CceEEEeCCCCcEEEecCC---CCcccceeEEEE
Q 045821          141 YDASMNTWTDAAPM---ST-ARCYFPCGVLNQKIYCIGGLGDT---HSWDVYDPRTNNWKLHTEP---NIFTEIEDSFVM  210 (352)
Q Consensus       141 ~d~~t~~W~~~~~~---~~-~r~~~~~~~~~~~iyv~gG~~~~---~~v~~yd~~t~~W~~~~~~---~~~~~~~~~~~~  210 (352)
                      ||+.+++|..++.+   |. +|..++++.++++||++||....   +++++||+.+++|++++++   |.++..++++.+
T Consensus       198 yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~  277 (470)
T PLN02193        198 FDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD  277 (470)
T ss_pred             EECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE
Confidence            99999999988653   33 25678888999999999998654   8999999999999999876   677888888889


Q ss_pred             CCEEEEEccCCCCCCceEEEEEeCCCCceeecCCC---CCCCCCCcEEEECCEEEEEecCCC---CeEEEEeCCCCceEE
Q 045821          211 DGKIYIRCSASAATSHVCALVYEPSTDSWLHADAN---MASGWRGPAVVVDDALYVLDQSSG---TKLMMWQKESREWSP  284 (352)
Q Consensus       211 ~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~---~~~~~~~~~~~~~~~l~~~gg~~~---~~v~~yd~~~~~W~~  284 (352)
                      +++||++||.........+++||+.+++|+.++.+   +..+..+.+++++++||++||..+   +++++||+++++|++
T Consensus       278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~  357 (470)
T PLN02193        278 EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQ  357 (470)
T ss_pred             CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEE
Confidence            99999999987766667899999999999998652   223333445678999999999764   689999999999999


Q ss_pred             ccCCC-CCcCCCCceEEEeCCEEEEEcCCc---------------eEEEEEcCCcccccceE
Q 045821          285 VGRLS-TLLTRPPCKLVAIGKTIFVIGKGC---------------SAVVIDVGNIGNIGGIM  330 (352)
Q Consensus       285 ~~~~~-~~~~~~~~~~~~~~~~i~v~gG~~---------------~~~~~d~~~~~w~~~~~  330 (352)
                      +..+. .+..|..++++.++++|||+||..               ++++||+++++|.+...
T Consensus       358 ~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~  419 (470)
T PLN02193        358 VETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDK  419 (470)
T ss_pred             eccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEccc
Confidence            97652 223577888889999999999953               36789999999986443

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=6.2e-36  Score=279.11  Aligned_cols=264  Identities=17%  Similarity=0.312  Sum_probs=204.1

Q ss_pred             hhhcccccChhhHHHHhhCCCC--CCEEEEEEecCCC-C-c-eeEEEecCCCCCCCeeEeccCCCccc-CCcceEEEEEC
Q 045821           46 SRWRGLLHSEEWCAYRRKHNLD--ETWIYAFCRDNKL-E-R-VCCYVLDPNSTRRSWKMIHELPARTL-RRKGMGFEVLG  119 (352)
Q Consensus        46 k~W~~l~~s~~~~~~~~~~~~~--~~~l~~~gg~~~~-~-~-~~~~~~d~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~  119 (352)
                      ..|..+....+.+.+|..|+..  ++.||++||.... . . ..++.||+  .+++|..++.+...|. .+..+++++++
T Consensus       151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~--~~~~W~~~~~~g~~P~~~~~~~~~v~~~  228 (470)
T PLN02193        151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDL--ETRTWSISPATGDVPHLSCLGVRMVSIG  228 (470)
T ss_pred             ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEEC--CCCEEEeCCCCCCCCCCcccceEEEEEC
Confidence            5798876554555567767654  8999999996422 2 2 35899999  9999998876532222 35678899999


Q ss_pred             CEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCC---CCcceeeeeEEECCEEEEEeCCCCC---CceEEEeCCCCcEE
Q 045821          120 KNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPM---STARCYFPCGVLNQKIYCIGGLGDT---HSWDVYDPRTNNWK  193 (352)
Q Consensus       120 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~---~~~r~~~~~~~~~~~iyv~gG~~~~---~~v~~yd~~t~~W~  193 (352)
                      ++||++||.+.. ...+++++||+.+++|+.++++   |.||..|+++.++++|||+||....   +++++||+.+++|+
T Consensus       229 ~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~  307 (470)
T PLN02193        229 STLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF  307 (470)
T ss_pred             CEEEEECCCCCC-CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence            999999998754 5678999999999999999887   7899999999999999999998654   78999999999999


Q ss_pred             EecC---CCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCC---CCCCCCCcEEEECCEEEEEecC
Q 045821          194 LHTE---PNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADAN---MASGWRGPAVVVDDALYVLDQS  267 (352)
Q Consensus       194 ~~~~---~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~---~~~~~~~~~~~~~~~l~~~gg~  267 (352)
                      .++.   ++.++..+.+++++++||++||..+ ...+++++||+.+++|++++..   +..+..+.+++++++||++||.
T Consensus       308 ~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g-~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~  386 (470)
T PLN02193        308 HCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNG-CEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGE  386 (470)
T ss_pred             eCCCCCCCCCCCCCcEEEEECCcEEEEECCCC-CccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCc
Confidence            9874   4456667778889999999998764 2356899999999999998652   3344445567889999999996


Q ss_pred             CC-------------CeEEEEeCCCCceEEccCCCC----CcCCCCce--EEEe--CCEEEEEcCCc
Q 045821          268 SG-------------TKLMMWQKESREWSPVGRLST----LLTRPPCK--LVAI--GKTIFVIGKGC  313 (352)
Q Consensus       268 ~~-------------~~v~~yd~~~~~W~~~~~~~~----~~~~~~~~--~~~~--~~~i~v~gG~~  313 (352)
                      ..             +++++||+.+++|+.+..++.    +..|..++  ....  ++.|+++||..
T Consensus       387 ~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~  453 (470)
T PLN02193        387 IAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKA  453 (470)
T ss_pred             cCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCC
Confidence            31             479999999999999975431    22444442  2222  34599999974

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=100.00  E-value=1.2e-35  Score=265.72  Aligned_cols=240  Identities=14%  Similarity=0.188  Sum_probs=192.3

Q ss_pred             CCCEEEEEEecCCCCc-----------eeEEEec-CCCC-CCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCC
Q 045821           67 DETWIYAFCRDNKLER-----------VCCYVLD-PNST-RRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSED  133 (352)
Q Consensus        67 ~~~~l~~~gg~~~~~~-----------~~~~~~d-~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~  133 (352)
                      .++.||++||.+..+.           ..++.|+ +  . +.+|..+++||   .+|..++++++++.||++||.+.. .
T Consensus        12 ~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~--~~~~~W~~~~~lp---~~r~~~~~~~~~~~lyviGG~~~~-~   85 (323)
T TIGR03548        12 IGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDE--NSNLKWVKDGQLP---YEAAYGASVSVENGIYYIGGSNSS-E   85 (323)
T ss_pred             ECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecC--CCceeEEEcccCC---ccccceEEEEECCEEEEEcCCCCC-C
Confidence            4899999999864321           2466664 3  3 34799999998   678778888999999999998654 4


Q ss_pred             CCCeEEEEECCCCee----EecCCCCCcceeeeeEEECCEEEEEeCCCCC---CceEEEeCCCCcEEEecCCCC-cccce
Q 045821          134 ATSEVYCYDASMNTW----TDAAPMSTARCYFPCGVLNQKIYCIGGLGDT---HSWDVYDPRTNNWKLHTEPNI-FTEIE  205 (352)
Q Consensus       134 ~~~~~~~~d~~t~~W----~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~---~~v~~yd~~t~~W~~~~~~~~-~~~~~  205 (352)
                      ..+++++||+.+++|    ..++++|.+|..|++++++++||++||....   +++++||+.+++|+.+++++. ++..+
T Consensus        86 ~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~  165 (323)
T TIGR03548        86 RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQP  165 (323)
T ss_pred             CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcc
Confidence            578999999999987    7889999999999999999999999997433   889999999999999987764 56666


Q ss_pred             eEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCC----CCCCC-CcE-EEECCEEEEEecCCC----------
Q 045821          206 DSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANM----ASGWR-GPA-VVVDDALYVLDQSSG----------  269 (352)
Q Consensus       206 ~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~----~~~~~-~~~-~~~~~~l~~~gg~~~----------  269 (352)
                      .+++++++||++||.... ...++++||+.+++|+.++++.    +.... ..+ +..+++||++||.++          
T Consensus       166 ~~~~~~~~iYv~GG~~~~-~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  244 (323)
T TIGR03548       166 VCVKLQNELYVFGGGSNI-AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDL  244 (323)
T ss_pred             eEEEECCEEEEEcCCCCc-cccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhh
Confidence            677899999999987642 2346899999999999997632    22222 223 345799999999752          


Q ss_pred             --------------------------CeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEcCCce
Q 045821          270 --------------------------TKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCS  314 (352)
Q Consensus       270 --------------------------~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~  314 (352)
                                                +.+++||+.+++|+.++.+|. ..|..++++.++++||++||..+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~~~~~iyv~GG~~~  314 (323)
T TIGR03548       245 ATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPF-FARCGAALLLTGNNIFSINGELK  314 (323)
T ss_pred             hhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccc-cccCchheEEECCEEEEEecccc
Confidence                                      369999999999999997764 25778889999999999999643

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PHA03098 kelch-like protein; Provisional

Probab=100.00  E-value=6.6e-36  Score=285.42  Aligned_cols=253  Identities=17%  Similarity=0.235  Sum_probs=207.2

Q ss_pred             CEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCee
Q 045821           69 TWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTW  148 (352)
Q Consensus        69 ~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W  148 (352)
                      ..+++.||.. ........|++  .++.|..++..+    .+..++++++++.||++||........+++++||+.+++|
T Consensus       251 ~~~~~~~g~~-~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W  323 (534)
T PHA03098        251 SIIYIHITMS-IFTYNYITNYS--PLSEINTIIDIH----YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSW  323 (534)
T ss_pred             cceEeecccc-hhhceeeecch--hhhhcccccCcc----ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCee
Confidence            4455545543 22334556788  888898887654    2344688999999999999876555667999999999999


Q ss_pred             EecCCCCCcceeeeeEEECCEEEEEeCCCCC---CceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCC-
Q 045821          149 TDAAPMSTARCYFPCGVLNQKIYCIGGLGDT---HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAAT-  224 (352)
Q Consensus       149 ~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~---~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~-  224 (352)
                      ..+++|+.+|..++++.++++||++||....   +++++||+.+++|+.++++|.++..+++++++|+||++||..... 
T Consensus       324 ~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~  403 (534)
T PHA03098        324 NKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDE  403 (534)
T ss_pred             eECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCc
Confidence            9999999999999999999999999998744   889999999999999999999888888899999999999965432 


Q ss_pred             CceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCC-------CeEEEEeCCCCceEEccCCCCCcCCCCc
Q 045821          225 SHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSG-------TKLMMWQKESREWSPVGRLSTLLTRPPC  297 (352)
Q Consensus       225 ~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~-------~~v~~yd~~~~~W~~~~~~~~~~~~~~~  297 (352)
                      ....+++||+.+++|+.+++.+..+..+.++..+++||++||...       +.+++||+++++|+.++.++.  .+..+
T Consensus       404 ~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~--~r~~~  481 (534)
T PHA03098        404 LLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNF--PRINA  481 (534)
T ss_pred             ccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCc--ccccc
Confidence            346899999999999999875555555566788999999999653       359999999999999998775  46777


Q ss_pred             eEEEeCCEEEEEcCCc------eEEEEEcCCcccccceE
Q 045821          298 KLVAIGKTIFVIGKGC------SAVVIDVGNIGNIGGIM  330 (352)
Q Consensus       298 ~~~~~~~~i~v~gG~~------~~~~~d~~~~~w~~~~~  330 (352)
                      +++.++++||++||..      .+++||+++++|.....
T Consensus       482 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~  520 (534)
T PHA03098        482 SLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK  520 (534)
T ss_pred             eEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence            7888899999999954      56789999999965433

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=100.00  E-value=2e-35  Score=267.11  Aligned_cols=240  Identities=19%  Similarity=0.248  Sum_probs=186.3

Q ss_pred             CCCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCC-----CCCCeEEEE
Q 045821           67 DETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSE-----DATSEVYCY  141 (352)
Q Consensus        67 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~-----~~~~~~~~~  141 (352)
                      .++.||++||..   ...++.||++..+++|.++++||.  .+|..+++++++++||++||.....     ...+++++|
T Consensus        16 ~~~~vyv~GG~~---~~~~~~~d~~~~~~~W~~l~~~p~--~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Y   90 (346)
T TIGR03547        16 IGDKVYVGLGSA---GTSWYKLDLKKPSKGWQKIADFPG--GPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRY   90 (346)
T ss_pred             ECCEEEEEcccc---CCeeEEEECCCCCCCceECCCCCC--CCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEE
Confidence            389999999973   245778885336789999999873  3688899999999999999975421     246789999


Q ss_pred             ECCCCeeEecC-CCCCcceeeeeE-EECCEEEEEeCCCCC-------------------------------------Cce
Q 045821          142 DASMNTWTDAA-PMSTARCYFPCG-VLNQKIYCIGGLGDT-------------------------------------HSW  182 (352)
Q Consensus       142 d~~t~~W~~~~-~~~~~r~~~~~~-~~~~~iyv~gG~~~~-------------------------------------~~v  182 (352)
                      |+.+++|+.++ .+|.+|..++++ .++++||++||....                                     +++
T Consensus        91 d~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  170 (346)
T TIGR03547        91 DPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNV  170 (346)
T ss_pred             ECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceE
Confidence            99999999997 455666666666 689999999997521                                     579


Q ss_pred             EEEeCCCCcEEEecCCCC-cccceeEEEECCEEEEEccCCCCCC-ceEEEEE--eCCCCceeecCCCCCCCC------CC
Q 045821          183 DVYDPRTNNWKLHTEPNI-FTEIEDSFVMDGKIYIRCSASAATS-HVCALVY--EPSTDSWLHADANMASGW------RG  252 (352)
Q Consensus       183 ~~yd~~t~~W~~~~~~~~-~~~~~~~~~~~g~iyv~GG~~~~~~-~~~i~~y--d~~~~~W~~~~~~~~~~~------~~  252 (352)
                      ++||+.+++|+.+++||. ++..+++++++++||++||...... ...++.|  |+.+++|+.+++.+.++.      .+
T Consensus       171 ~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~  250 (346)
T TIGR03547       171 LSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAG  250 (346)
T ss_pred             EEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccE
Confidence            999999999999998876 4566677889999999999754332 2245555  457789999977543321      11


Q ss_pred             -cEEEECCEEEEEecCCC---------------------CeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEc
Q 045821          253 -PAVVVDDALYVLDQSSG---------------------TKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIG  310 (352)
Q Consensus       253 -~~~~~~~~l~~~gg~~~---------------------~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~g  310 (352)
                       .+++++++||++||...                     ..+.+||+++++|+.++.+|.  .+..+++++++++|||+|
T Consensus       251 ~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~--~~~~~~~~~~~~~iyv~G  328 (346)
T TIGR03547       251 AFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQ--GLAYGVSVSWNNGVLLIG  328 (346)
T ss_pred             EeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCC--CceeeEEEEcCCEEEEEe
Confidence             24678999999999641                     257899999999999999987  466677788999999999


Q ss_pred             CCc
Q 045821          311 KGC  313 (352)
Q Consensus       311 G~~  313 (352)
                      |..
T Consensus       329 G~~  331 (346)
T TIGR03547       329 GEN  331 (346)
T ss_pred             ccC
Confidence            975

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=6.9e-35  Score=262.75  Aligned_cols=235  Identities=17%  Similarity=0.282  Sum_probs=187.3

Q ss_pred             CCCCeeEeccCCC-cccCCcceEEEEECCEEEEEeCCCCC-CCCCCeEEEEECCCCeeEecCCCC-Ccc---eeeeeEEE
Q 045821           93 TRRSWKMIHELPA-RTLRRKGMGFEVLGKNAYLLGGCGWS-EDATSEVYCYDASMNTWTDAAPMS-TAR---CYFPCGVL  166 (352)
Q Consensus        93 ~~~~w~~~~~~~~-~~~~~~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~~d~~t~~W~~~~~~~-~~r---~~~~~~~~  166 (352)
                      ....|.++..... .|.+|..|++++++++||++||.... ....+++++||+.+++|..+++++ .||   ..|+++.+
T Consensus         5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~   84 (341)
T PLN02153          5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV   84 (341)
T ss_pred             cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE
Confidence            6788999987321 23689999999999999999998543 234579999999999999988764 344   36788899


Q ss_pred             CCEEEEEeCCCCC---CceEEEeCCCCcEEEecCC-----CCcccceeEEEECCEEEEEccCCCCC------CceEEEEE
Q 045821          167 NQKIYCIGGLGDT---HSWDVYDPRTNNWKLHTEP-----NIFTEIEDSFVMDGKIYIRCSASAAT------SHVCALVY  232 (352)
Q Consensus       167 ~~~iyv~gG~~~~---~~v~~yd~~t~~W~~~~~~-----~~~~~~~~~~~~~g~iyv~GG~~~~~------~~~~i~~y  232 (352)
                      +++||++||....   +++++||+.+++|+.++++     |.++..+++++++++|||+||.....      ...++++|
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y  164 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY  164 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence            9999999997654   7899999999999998866     66777888889999999999986432      23479999


Q ss_pred             eCCCCceeecCCCC---CCCCCCcEEEECCEEEEEecCC------------CCeEEEEeCCCCceEEccCCC-CCcCCCC
Q 045821          233 EPSTDSWLHADANM---ASGWRGPAVVVDDALYVLDQSS------------GTKLMMWQKESREWSPVGRLS-TLLTRPP  296 (352)
Q Consensus       233 d~~~~~W~~~~~~~---~~~~~~~~~~~~~~l~~~gg~~------------~~~v~~yd~~~~~W~~~~~~~-~~~~~~~  296 (352)
                      |+.+++|+.++...   ..+..+.+++++++||++||..            .+++++||+++++|+++.... .+..|..
T Consensus       165 d~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~  244 (341)
T PLN02153        165 NIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSV  244 (341)
T ss_pred             ECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcce
Confidence            99999999987632   3333444577899999998853            147999999999999997532 1225777


Q ss_pred             ceEEEeCCEEEEEcCCc---------------eEEEEEcCCccccc
Q 045821          297 CKLVAIGKTIFVIGKGC---------------SAVVIDVGNIGNIG  327 (352)
Q Consensus       297 ~~~~~~~~~i~v~gG~~---------------~~~~~d~~~~~w~~  327 (352)
                      ++++.++++|||+||..               +++.||+++++|.+
T Consensus       245 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~  290 (341)
T PLN02153        245 FAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEK  290 (341)
T ss_pred             eeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEe
Confidence            88889999999999952               56789999999975

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=100.00  E-value=1.2e-34  Score=263.95  Aligned_cols=239  Identities=19%  Similarity=0.262  Sum_probs=184.6

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCC-C----CCCCCeEEEEE
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGW-S----EDATSEVYCYD  142 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~-~----~~~~~~~~~~d  142 (352)
                      ++.||++||...   ..++.||.+..++.|.+++++|.  .+|..++++.++++||++||... .    ....+++++||
T Consensus        38 ~~~iyv~gG~~~---~~~~~~d~~~~~~~W~~l~~~p~--~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD  112 (376)
T PRK14131         38 NNTVYVGLGSAG---TSWYKLDLNAPSKGWTKIAAFPG--GPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYD  112 (376)
T ss_pred             CCEEEEEeCCCC---CeEEEEECCCCCCCeEECCcCCC--CCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEe
Confidence            899999998632   34778887224589999998873  36888899999999999999764 1    12367899999


Q ss_pred             CCCCeeEecCC-CCCcceeeeeEE-ECCEEEEEeCCCC-------------------------------------CCceE
Q 045821          143 ASMNTWTDAAP-MSTARCYFPCGV-LNQKIYCIGGLGD-------------------------------------THSWD  183 (352)
Q Consensus       143 ~~t~~W~~~~~-~~~~r~~~~~~~-~~~~iyv~gG~~~-------------------------------------~~~v~  183 (352)
                      +.+++|+.+++ +|.++..|+++. .+++||++||...                                     .++++
T Consensus       113 ~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~  192 (376)
T PRK14131        113 PKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVL  192 (376)
T ss_pred             CCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEE
Confidence            99999999985 456667777766 7999999999752                                     15799


Q ss_pred             EEeCCCCcEEEecCCCC-cccceeEEEECCEEEEEccCCCCC-Cce--EEEEEeCCCCceeecCCCCCCCC-------CC
Q 045821          184 VYDPRTNNWKLHTEPNI-FTEIEDSFVMDGKIYIRCSASAAT-SHV--CALVYEPSTDSWLHADANMASGW-------RG  252 (352)
Q Consensus       184 ~yd~~t~~W~~~~~~~~-~~~~~~~~~~~g~iyv~GG~~~~~-~~~--~i~~yd~~~~~W~~~~~~~~~~~-------~~  252 (352)
                      +||+.+++|+.++++|. ++..++++.++++||++||....+ ...  ..+.||+.+++|+.+++.+.++.       .+
T Consensus       193 ~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~  272 (376)
T PRK14131        193 SYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAG  272 (376)
T ss_pred             EEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccce
Confidence            99999999999988876 455666778899999999865332 222  34456788999999976543321       11


Q ss_pred             c-EEEECCEEEEEecCCC---------------------CeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEc
Q 045821          253 P-AVVVDDALYVLDQSSG---------------------TKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIG  310 (352)
Q Consensus       253 ~-~~~~~~~l~~~gg~~~---------------------~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~g  310 (352)
                      . +++.+++||++||...                     ..+.+||+++++|+.++.+|.  .+..++++.++++|||+|
T Consensus       273 ~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~--~r~~~~av~~~~~iyv~G  350 (376)
T PRK14131        273 AFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQ--GLAYGVSVSWNNGVLLIG  350 (376)
T ss_pred             EeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCC--CccceEEEEeCCEEEEEc
Confidence            1 4568999999999641                     135689999999999998887  466677888999999999


Q ss_pred             CCc
Q 045821          311 KGC  313 (352)
Q Consensus       311 G~~  313 (352)
                      |..
T Consensus       351 G~~  353 (376)
T PRK14131        351 GET  353 (376)
T ss_pred             CCC
Confidence            964

>PHA02790 Kelch-like protein; Provisional

Probab=100.00  E-value=2.1e-34  Score=269.51  Aligned_cols=203  Identities=17%  Similarity=0.276  Sum_probs=178.1

Q ss_pred             EEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEE
Q 045821          115 FEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKL  194 (352)
Q Consensus       115 ~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~  194 (352)
                      .+..++.||++||.+.. ...+++++|||.+++|..+++|+.+|..++++.++++||++||.+...++++||+.+++|+.
T Consensus       267 ~~~~~~~lyviGG~~~~-~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~  345 (480)
T PHA02790        267 STHVGEVVYLIGGWMNN-EIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVN  345 (480)
T ss_pred             eEEECCEEEEEcCCCCC-CcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEE
Confidence            35589999999998653 45788999999999999999999999999999999999999997654789999999999999


Q ss_pred             ecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEE
Q 045821          195 HTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMM  274 (352)
Q Consensus       195 ~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~  274 (352)
                      +++|+.++..+++++++|+||++||....  ...+++||+.+++|+.+++++.++..+.+++++|+||++||    .+.+
T Consensus       346 ~~~l~~~r~~~~~~~~~g~IYviGG~~~~--~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG----~~e~  419 (480)
T PHA02790        346 MPSLLKPRCNPAVASINNVIYVIGGHSET--DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR----NAEF  419 (480)
T ss_pred             CCCCCCCCcccEEEEECCEEEEecCcCCC--CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC----ceEE
Confidence            99999999888899999999999997532  35789999999999999876655555566789999999998    5789


Q ss_pred             EeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEcCCc------eEEEEEcCCcccc
Q 045821          275 WQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGC------SAVVIDVGNIGNI  326 (352)
Q Consensus       275 yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~------~~~~~d~~~~~w~  326 (352)
                      ||+++++|+.++.++.  .|..+++++++++||++||.+      .+..||+++++|.
T Consensus       420 ydp~~~~W~~~~~m~~--~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~  475 (480)
T PHA02790        420 YCESSNTWTLIDDPIY--PRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWN  475 (480)
T ss_pred             ecCCCCcEeEcCCCCC--CccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEE
Confidence            9999999999998876  588889999999999999953      4668999999995

>PHA03098 kelch-like protein; Provisional

Probab=100.00  E-value=4.8e-34  Score=272.60  Aligned_cols=217  Identities=20%  Similarity=0.340  Sum_probs=188.2

Q ss_pred             CCEEEEEEecCCCCc--eeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCC
Q 045821           68 ETWIYAFCRDNKLER--VCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASM  145 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~--~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t  145 (352)
                      ++.||++||.+....  ...+.||+  .+++|..+++++   .+|.++++++++++||++||.+.. ...+++++||+.+
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~--~~~~W~~~~~~~---~~R~~~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~  367 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDT--KTKSWNKVPELI---YPRKNPGVTVFNNRIYVIGGIYNS-ISLNTVESWKPGE  367 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeC--CCCeeeECCCCC---cccccceEEEECCEEEEEeCCCCC-EecceEEEEcCCC
Confidence            899999999754332  36889999  999999999988   678999999999999999998743 5578899999999


Q ss_pred             CeeEecCCCCCcceeeeeEEECCEEEEEeCCCCC----CceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCC
Q 045821          146 NTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDT----HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSAS  221 (352)
Q Consensus       146 ~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~----~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~  221 (352)
                      ++|+.++++|.||..++++.++++||++||....    +++++||+.+++|+.++++|.++..+++++++++||++||..
T Consensus       368 ~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  447 (534)
T PHA03098        368 SKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGIS  447 (534)
T ss_pred             CceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCcc
Confidence            9999999999999999999999999999996432    789999999999999999988888888899999999999876


Q ss_pred             CCCC---ceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCC----CeEEEEeCCCCceEEccCCCC
Q 045821          222 AATS---HVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSG----TKLMMWQKESREWSPVGRLST  290 (352)
Q Consensus       222 ~~~~---~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~----~~v~~yd~~~~~W~~~~~~~~  290 (352)
                      ....   ...+++||+.+++|+.++..+.++....++..+++||++||..+    +.+++||+++++|+.++.+|+
T Consensus       448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~  523 (534)
T PHA03098        448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK  523 (534)
T ss_pred             CCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence            4332   34799999999999999875555555556778999999999763    589999999999999998776

>PHA02790 Kelch-like protein; Provisional

Probab=100.00  E-value=1e-33  Score=264.92  Aligned_cols=203  Identities=15%  Similarity=0.251  Sum_probs=177.3

Q ss_pred             CCCEEEEEEecCCCC-ceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCC
Q 045821           67 DETWIYAFCRDNKLE-RVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASM  145 (352)
Q Consensus        67 ~~~~l~~~gg~~~~~-~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t  145 (352)
                      .++.||++||.+... ....+.|||  .+++|..+++|+   .+|..++++.++++||++||.+.    .+++++||+.+
T Consensus       270 ~~~~lyviGG~~~~~~~~~v~~Ydp--~~~~W~~~~~m~---~~r~~~~~v~~~~~iYviGG~~~----~~sve~ydp~~  340 (480)
T PHA02790        270 VGEVVYLIGGWMNNEIHNNAIAVNY--ISNNWIPIPPMN---SPRLYASGVPANNKLYVVGGLPN----PTSVERWFHGD  340 (480)
T ss_pred             ECCEEEEEcCCCCCCcCCeEEEEEC--CCCEEEECCCCC---chhhcceEEEECCEEEEECCcCC----CCceEEEECCC
Confidence            488999999975433 345788999  999999999998   67888999999999999999753    25689999999


Q ss_pred             CeeEecCCCCCcceeeeeEEECCEEEEEeCCCCC-CceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCC
Q 045821          146 NTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDT-HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAAT  224 (352)
Q Consensus       146 ~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~-~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~  224 (352)
                      ++|..+++||.+|..+++++++++||++||.... +.+++|||.+++|+.+++|+.++..+++++++|+||++||.    
T Consensus       341 n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~----  416 (480)
T PHA02790        341 AAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN----  416 (480)
T ss_pred             CeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc----
Confidence            9999999999999999999999999999998654 78999999999999999999988888889999999999863    


Q ss_pred             CceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCC----CeEEEEeCCCCceEEcc
Q 045821          225 SHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSG----TKLMMWQKESREWSPVG  286 (352)
Q Consensus       225 ~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~----~~v~~yd~~~~~W~~~~  286 (352)
                          +++||+.+++|+.+++.+.++....+++++|+||++||..+    +.+.+||+++++|+...
T Consensus       417 ----~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~~  478 (480)
T PHA02790        417 ----AEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIWD  478 (480)
T ss_pred             ----eEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEecC
Confidence                57899999999999876555656667889999999999753    47999999999998654

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=100.00  E-value=1.4e-33  Score=228.91  Aligned_cols=251  Identities=20%  Similarity=0.328  Sum_probs=202.7

Q ss_pred             HhhCCCC--CCEEEEEEec------CCCCceeEEEecCCCCCCCeeEeccCC----------CcccCCcceEEEEECCEE
Q 045821           61 RRKHNLD--ETWIYAFCRD------NKLERVCCYVLDPNSTRRSWKMIHELP----------ARTLRRKGMGFEVLGKNA  122 (352)
Q Consensus        61 ~~~~~~~--~~~l~~~gg~------~~~~~~~~~~~d~~~~~~~w~~~~~~~----------~~~~~~~~~~~~~~~~~i  122 (352)
                      |..|+..  +++||-+||.      .........++|.  .+-+|.++++--          .-|-.|++|+++...+++
T Consensus        14 RVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa--~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~   91 (392)
T KOG4693|consen   14 RVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNA--ENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKA   91 (392)
T ss_pred             cccceeeeecceEEecCCcccccccccCCcceeEEeec--cceeEEecCcccccccccCCCCccchhhcCceEEEEcceE
Confidence            4444433  8999999985      1233567889999  999999998711          112458999999999999


Q ss_pred             EEEeCCCCCCCCCCeEEEEECCCCeeEecC---CCCCcceeeeeEEECCEEEEEeCCCCC-----CceEEEeCCCCcEEE
Q 045821          123 YLLGGCGWSEDATSEVYCYDASMNTWTDAA---PMSTARCYFPCGVLNQKIYCIGGLGDT-----HSWDVYDPRTNNWKL  194 (352)
Q Consensus       123 yv~GG~~~~~~~~~~~~~~d~~t~~W~~~~---~~~~~r~~~~~~~~~~~iyv~gG~~~~-----~~v~~yd~~t~~W~~  194 (352)
                      |+.||.+.....-+.++.|||.+++|....   .+|.+|-+|+++++++.+|++||+..+     +++..+|..|.+|+.
T Consensus        92 yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~  171 (392)
T KOG4693|consen   92 YVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWRE  171 (392)
T ss_pred             EEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeee
Confidence            999999887677788999999999998653   468899999999999999999998765     899999999999999


Q ss_pred             ecC---CCCcccceeEEEECCEEEEEccCCCCCCc---------eEEEEEeCCCCceeecCC---CCCCCCCCcEEEECC
Q 045821          195 HTE---PNIFTEIEDSFVMDGKIYIRCSASAATSH---------VCALVYEPSTDSWLHADA---NMASGWRGPAVVVDD  259 (352)
Q Consensus       195 ~~~---~~~~~~~~~~~~~~g~iyv~GG~~~~~~~---------~~i~~yd~~~~~W~~~~~---~~~~~~~~~~~~~~~  259 (352)
                      +..   +|.=+..++++++++.+|++||.......         ..|..+|..++.|...+.   .+..++++++.+.++
T Consensus       172 ~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng  251 (392)
T KOG4693|consen  172 MHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNG  251 (392)
T ss_pred             hhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcc
Confidence            863   55667778889999999999987643221         278899999999998754   344566777789999


Q ss_pred             EEEEEecCCC------CeEEEEeCCCCceEEccCCC-CCcCCCCceEEEeCCEEEEEcCCc
Q 045821          260 ALYVLDQSSG------TKLMMWQKESREWSPVGRLS-TLLTRPPCKLVAIGKTIFVIGKGC  313 (352)
Q Consensus       260 ~l~~~gg~~~------~~v~~yd~~~~~W~~~~~~~-~~~~~~~~~~~~~~~~i~v~gG~~  313 (352)
                      ++|++||+++      ++++.|||.+..|+.+..-. .+..|+..+.++.++|+|+|||..
T Consensus       252 ~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTs  312 (392)
T KOG4693|consen  252 KMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTS  312 (392)
T ss_pred             eEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCC
Confidence            9999999987      79999999999999886321 112466667777899999999975

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=100.00  E-value=6.1e-32  Score=241.90  Aligned_cols=222  Identities=15%  Similarity=0.205  Sum_probs=176.5

Q ss_pred             CCcceEEEEECCEEEEEeCCCCCC---------CCCCeEEEEE-CCC-CeeEecCCCCCcceeeeeEEECCEEEEEeCCC
Q 045821          109 RRKGMGFEVLGKNAYLLGGCGWSE---------DATSEVYCYD-ASM-NTWTDAAPMSTARCYFPCGVLNQKIYCIGGLG  177 (352)
Q Consensus       109 ~~~~~~~~~~~~~iyv~GG~~~~~---------~~~~~~~~~d-~~t-~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~  177 (352)
                      .++++.++++++.||++||.+...         ...+++++|+ +.. .+|..+++||.+|..++++.++++||++||..
T Consensus         3 ~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~   82 (323)
T TIGR03548         3 GVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSN   82 (323)
T ss_pred             ceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCC
Confidence            466788899999999999986542         1345788885 332 37999999999999888899999999999976


Q ss_pred             CC---CceEEEeCCCCcE----EEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCC-CC
Q 045821          178 DT---HSWDVYDPRTNNW----KLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMA-SG  249 (352)
Q Consensus       178 ~~---~~v~~yd~~t~~W----~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~-~~  249 (352)
                      ..   +++++||+.+++|    +.++++|.++..+++++++++||++||.......+++++||+.+++|+++++.+. .+
T Consensus        83 ~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r  162 (323)
T TIGR03548        83 SSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR  162 (323)
T ss_pred             CCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC
Confidence            54   8899999999988    7788888888888889999999999997655556799999999999999976443 33


Q ss_pred             CCCcEEEECCEEEEEecCCC---CeEEEEeCCCCceEEccCCCC---CcCC-CCceEEEeCCEEEEEcCCc---------
Q 045821          250 WRGPAVVVDDALYVLDQSSG---TKLMMWQKESREWSPVGRLST---LLTR-PPCKLVAIGKTIFVIGKGC---------  313 (352)
Q Consensus       250 ~~~~~~~~~~~l~~~gg~~~---~~v~~yd~~~~~W~~~~~~~~---~~~~-~~~~~~~~~~~i~v~gG~~---------  313 (352)
                      ..+.+++.+++||++||..+   .++++||+++++|+.++.++.   +..+ ..++++..+++||++||.+         
T Consensus       163 ~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~  242 (323)
T TIGR03548       163 VQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVI  242 (323)
T ss_pred             CcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHh
Confidence            34445678999999999764   468999999999999987642   1122 2334455689999999964         


Q ss_pred             -----------------------------eEEEEEcCCcccccceE
Q 045821          314 -----------------------------SAVVIDVGNIGNIGGIM  330 (352)
Q Consensus       314 -----------------------------~~~~~d~~~~~w~~~~~  330 (352)
                                                   ++++||+++++|.....
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~  288 (323)
T TIGR03548       243 DLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGN  288 (323)
T ss_pred             hhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccc
Confidence                                         46789999999977543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=100.00  E-value=8.8e-32  Score=243.37  Aligned_cols=223  Identities=18%  Similarity=0.264  Sum_probs=171.0

Q ss_pred             ccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEEC--CCCeeEecCCCC-CcceeeeeEEECCEEEEEeCCC
Q 045821          101 HELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDA--SMNTWTDAAPMS-TARCYFPCGVLNQKIYCIGGLG  177 (352)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~--~t~~W~~~~~~~-~~r~~~~~~~~~~~iyv~gG~~  177 (352)
                      ++||   .++...++++++++|||+||..     .+++++||+  .+++|..+++|| .+|..++++.++++|||+||..
T Consensus         2 ~~lp---~~~~~~~~~~~~~~vyv~GG~~-----~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~   73 (346)
T TIGR03547         2 PDLP---VGFKNGTGAIIGDKVYVGLGSA-----GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIG   73 (346)
T ss_pred             CCCC---ccccCceEEEECCEEEEEcccc-----CCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCC
Confidence            5566   5677777889999999999963     267899996  578899999998 5899999999999999999975


Q ss_pred             C--------C-CceEEEeCCCCcEEEecC-CCCcccceeEE-EECCEEEEEccCCCCC----------------------
Q 045821          178 D--------T-HSWDVYDPRTNNWKLHTE-PNIFTEIEDSF-VMDGKIYIRCSASAAT----------------------  224 (352)
Q Consensus       178 ~--------~-~~v~~yd~~t~~W~~~~~-~~~~~~~~~~~-~~~g~iyv~GG~~~~~----------------------  224 (352)
                      .        . +++++||+.+++|++++. ++..+..+.++ +++++||++||.....                      
T Consensus        74 ~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (346)
T TIGR03547        74 KANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLI  153 (346)
T ss_pred             CCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhH
Confidence            2        1 689999999999999974 34444445455 6899999999976321                      


Q ss_pred             ------------CceEEEEEeCCCCceeecCCCCCC-CCCCcEEEECCEEEEEecCCC-----CeEEEEe--CCCCceEE
Q 045821          225 ------------SHVCALVYEPSTDSWLHADANMAS-GWRGPAVVVDDALYVLDQSSG-----TKLMMWQ--KESREWSP  284 (352)
Q Consensus       225 ------------~~~~i~~yd~~~~~W~~~~~~~~~-~~~~~~~~~~~~l~~~gg~~~-----~~v~~yd--~~~~~W~~  284 (352)
                                  ....+++||+.+++|+.+++.+.. +....++..+++||++||...     ..++.||  +++++|++
T Consensus       154 ~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~  233 (346)
T TIGR03547       154 AAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNK  233 (346)
T ss_pred             HHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeee
Confidence                        125799999999999999875543 334445678999999999643     2355554  57789999


Q ss_pred             ccCCCCCcC-----CCCceEEEeCCEEEEEcCCc-----------------------eEEEEEcCCcccccceEE
Q 045821          285 VGRLSTLLT-----RPPCKLVAIGKTIFVIGKGC-----------------------SAVVIDVGNIGNIGGIMV  331 (352)
Q Consensus       285 ~~~~~~~~~-----~~~~~~~~~~~~i~v~gG~~-----------------------~~~~~d~~~~~w~~~~~~  331 (352)
                      ++.+|....     +..+.++.++++||++||..                       .+.+||+++++|.....|
T Consensus       234 ~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l  308 (346)
T TIGR03547       234 LPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKL  308 (346)
T ss_pred             cCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCC
Confidence            998876421     12334677899999999963                       356899999999876544

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.98  E-value=2.2e-30  Score=236.00  Aligned_cols=230  Identities=18%  Similarity=0.243  Sum_probs=173.5

Q ss_pred             CCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECC--CCeeEecCCCC-CcceeeeeEEECCEE
Q 045821           94 RRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDAS--MNTWTDAAPMS-TARCYFPCGVLNQKI  170 (352)
Q Consensus        94 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~--t~~W~~~~~~~-~~r~~~~~~~~~~~i  170 (352)
                      .-.++.+++||   .++..++++.++++||++||...     +.+++||+.  +++|..++++| .+|..++++.++++|
T Consensus        16 ~~~~~~l~~lP---~~~~~~~~~~~~~~iyv~gG~~~-----~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~I   87 (376)
T PRK14131         16 AANAEQLPDLP---VPFKNGTGAIDNNTVYVGLGSAG-----TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKL   87 (376)
T ss_pred             ceecccCCCCC---cCccCCeEEEECCEEEEEeCCCC-----CeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEE
Confidence            34566778888   56666678889999999999633     458999986  47899999987 589999999999999


Q ss_pred             EEEeCCCC-------C--CceEEEeCCCCcEEEecCC-CCcccceeEEE-ECCEEEEEccCCCCC---------------
Q 045821          171 YCIGGLGD-------T--HSWDVYDPRTNNWKLHTEP-NIFTEIEDSFV-MDGKIYIRCSASAAT---------------  224 (352)
Q Consensus       171 yv~gG~~~-------~--~~v~~yd~~t~~W~~~~~~-~~~~~~~~~~~-~~g~iyv~GG~~~~~---------------  224 (352)
                      ||+||...       .  +++++||+.+++|+.++++ +..+..+++++ .+++||++||.....               
T Consensus        88 YV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~  167 (376)
T PRK14131         88 YVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDK  167 (376)
T ss_pred             EEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccch
Confidence            99999754       1  6899999999999999853 44444555555 799999999975310               


Q ss_pred             -------------------CceEEEEEeCCCCceeecCCCCCCCC-CCcEEEECCEEEEEecCCC-----CeE--EEEeC
Q 045821          225 -------------------SHVCALVYEPSTDSWLHADANMASGW-RGPAVVVDDALYVLDQSSG-----TKL--MMWQK  277 (352)
Q Consensus       225 -------------------~~~~i~~yd~~~~~W~~~~~~~~~~~-~~~~~~~~~~l~~~gg~~~-----~~v--~~yd~  277 (352)
                                         ....+++||+.+++|+.+++.+..++ ..+++..+++||++||...     ..+  +.||+
T Consensus       168 ~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~  247 (376)
T PRK14131        168 TPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTG  247 (376)
T ss_pred             hhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecC
Confidence                               13579999999999999987554333 4445678999999999532     233  45688


Q ss_pred             CCCceEEccCCCCCcC----C--CCceEEEeCCEEEEEcCCc-----------------------eEEEEEcCCcccccc
Q 045821          278 ESREWSPVGRLSTLLT----R--PPCKLVAIGKTIFVIGKGC-----------------------SAVVIDVGNIGNIGG  328 (352)
Q Consensus       278 ~~~~W~~~~~~~~~~~----~--~~~~~~~~~~~i~v~gG~~-----------------------~~~~~d~~~~~w~~~  328 (352)
                      ++++|+.++.+|....    +  ..+..+..+++||++||..                       .+.+||+++++|...
T Consensus       248 ~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~  327 (376)
T PRK14131        248 NNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKV  327 (376)
T ss_pred             CCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCccccc
Confidence            9999999998876321    1  1122467899999999953                       234799999999875


Q ss_pred             eEE
Q 045821          329 IMV  331 (352)
Q Consensus       329 ~~~  331 (352)
                      ..|
T Consensus       328 ~~l  330 (376)
T PRK14131        328 GEL  330 (376)
T ss_pred             CcC
Confidence            444

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.96  E-value=3.7e-28  Score=197.42  Aligned_cols=229  Identities=18%  Similarity=0.202  Sum_probs=183.2

Q ss_pred             CeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCC----CCCCCeEEEEECCCCeeEecCC-------------CCCcc
Q 045821           96 SWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWS----EDATSEVYCYDASMNTWTDAAP-------------MSTAR  158 (352)
Q Consensus        96 ~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~~d~~t~~W~~~~~-------------~~~~r  158 (352)
                      .|+..-.-.   +.|-+|+++.++..||-|||+-..    ....-++.++|..+-+|..+++             .|..|
T Consensus         3 ~WTVHLeGG---PrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqR   79 (392)
T KOG4693|consen    3 TWTVHLEGG---PRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQR   79 (392)
T ss_pred             eEEEEecCC---cccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhh
Confidence            355443333   468899999999999999996432    1335589999999999999886             23459


Q ss_pred             eeeeeEEECCEEEEEeCCCCC----CceEEEeCCCCcEEEec---CCCCcccceeEEEECCEEEEEccCCCCC--CceEE
Q 045821          159 CYFPCGVLNQKIYCIGGLGDT----HSWDVYDPRTNNWKLHT---EPNIFTEIEDSFVMDGKIYIRCSASAAT--SHVCA  229 (352)
Q Consensus       159 ~~~~~~~~~~~iyv~gG~~~~----~~v~~yd~~t~~W~~~~---~~~~~~~~~~~~~~~g~iyv~GG~~~~~--~~~~i  229 (352)
                      ++|+.+.+++++|+.||.++.    +.++.||++|+.|.+..   -.|.++.++++|+.++.+|++||.....  ..+++
T Consensus        80 YGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~  159 (392)
T KOG4693|consen   80 YGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDT  159 (392)
T ss_pred             cCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccc
Confidence            999999999999999998875    88899999999998764   3688899999999999999999987543  34589


Q ss_pred             EEEeCCCCceeecCC---CCCCCCCCcEEEECCEEEEEecCCC-------------CeEEEEeCCCCceEEccCCCC-Cc
Q 045821          230 LVYEPSTDSWLHADA---NMASGWRGPAVVVDDALYVLDQSSG-------------TKLMMWQKESREWSPVGRLST-LL  292 (352)
Q Consensus       230 ~~yd~~~~~W~~~~~---~~~~~~~~~~~~~~~~l~~~gg~~~-------------~~v~~yd~~~~~W~~~~~~~~-~~  292 (352)
                      .++|..+.+|+++..   ++.-+..+.+.++++.+|++||...             +.+..+|..++.|..-+..+. +.
T Consensus       160 h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~  239 (392)
T KOG4693|consen  160 HVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPG  239 (392)
T ss_pred             eeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCC
Confidence            999999999999854   2222334566788999999999543             578899999999998764332 22


Q ss_pred             CCCCceEEEeCCEEEEEcCCc--------eEEEEEcCCccccc
Q 045821          293 TRPPCKLVAIGKTIFVIGKGC--------SAVVIDVGNIGNIG  327 (352)
Q Consensus       293 ~~~~~~~~~~~~~i~v~gG~~--------~~~~~d~~~~~w~~  327 (352)
                      .|+.++..++++++|+|||++        +.+.||+.+..|..
T Consensus       240 GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~  282 (392)
T KOG4693|consen  240 GRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSV  282 (392)
T ss_pred             cccccceEEEcceEEEecccchhhhhhhcceeecccccchhee
Confidence            688889999999999999976        46679999999954

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.94  E-value=4.7e-25  Score=205.53  Aligned_cols=234  Identities=20%  Similarity=0.246  Sum_probs=191.6

Q ss_pred             ChhhHHHHhhCCCC--CCEEEEEEecCCCC---ceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCC
Q 045821           54 SEEWCAYRRKHNLD--ETWIYAFCRDNKLE---RVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGC  128 (352)
Q Consensus        54 s~~~~~~~~~~~~~--~~~l~~~gg~~~~~---~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~  128 (352)
                      ....+..|..|.+.  ++.+|++||.....   ...+++||.  .+..|.........+.++.+++++.++++||+|||.
T Consensus        54 ~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~--~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~  131 (482)
T KOG0379|consen   54 LGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDL--ESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGT  131 (482)
T ss_pred             CCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeec--CCcccccccccCCCCCcccceeEEEECCeEEEEccc
Confidence            34556677777655  89999999964222   225999999  999998887766555889999999999999999998


Q ss_pred             CCCCCCCCeEEEEECCCCeeEecCC---CCCcceeeeeEEECCEEEEEeCCCCC----CceEEEeCCCCcEEEec---CC
Q 045821          129 GWSEDATSEVYCYDASMNTWTDAAP---MSTARCYFPCGVLNQKIYCIGGLGDT----HSWDVYDPRTNNWKLHT---EP  198 (352)
Q Consensus       129 ~~~~~~~~~~~~~d~~t~~W~~~~~---~~~~r~~~~~~~~~~~iyv~gG~~~~----~~v~~yd~~t~~W~~~~---~~  198 (352)
                      +......++++.||+.|++|+.+..   +|.+|.+|+++.++.++||+||....    +++++||+.+.+|.++.   ..
T Consensus       132 ~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~  211 (482)
T KOG0379|consen  132 DKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEA  211 (482)
T ss_pred             cCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCC
Confidence            8644668899999999999998754   57889999999999999999998754    99999999999999986   35


Q ss_pred             CCcccceeEEEECCEEEEEccCC-CCCCceEEEEEeCCCCceeecCC---CCCCCCCCcEEEECCEEEEEecCCC-----
Q 045821          199 NIFTEIEDSFVMDGKIYIRCSAS-AATSHVCALVYEPSTDSWLHADA---NMASGWRGPAVVVDDALYVLDQSSG-----  269 (352)
Q Consensus       199 ~~~~~~~~~~~~~g~iyv~GG~~-~~~~~~~i~~yd~~~~~W~~~~~---~~~~~~~~~~~~~~~~l~~~gg~~~-----  269 (352)
                      |.++..|++++++++++++||.. .....++++.+|+.+.+|.++..   .+.++..+..+..+..++++||...     
T Consensus       212 P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~  291 (482)
T KOG0379|consen  212 PSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEP  291 (482)
T ss_pred             CCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCccccccc
Confidence            66788889999999999999988 44556699999999999997653   2333444445688999999998544     


Q ss_pred             -CeEEEEeCCCCceEEccCCC
Q 045821          270 -TKLMMWQKESREWSPVGRLS  289 (352)
Q Consensus       270 -~~v~~yd~~~~~W~~~~~~~  289 (352)
                       .+++.||.+++.|+++....
T Consensus       292 l~~~~~l~~~~~~w~~~~~~~  312 (482)
T KOG0379|consen  292 LGDLYGLDLETLVWSKVESVG  312 (482)
T ss_pred             ccccccccccccceeeeeccc
Confidence             46889999999999997554

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.93  E-value=7.4e-24  Score=197.52  Aligned_cols=225  Identities=20%  Similarity=0.357  Sum_probs=184.4

Q ss_pred             cccCCcceEEEEECCEEEEEeCCCCCCCCCC-eEEEEECCCCeeEecC---CCCCcceeeeeEEECCEEEEEeCCCCC--
Q 045821          106 RTLRRKGMGFEVLGKNAYLLGGCGWSEDATS-EVYCYDASMNTWTDAA---PMSTARCYFPCGVLNQKIYCIGGLGDT--  179 (352)
Q Consensus       106 ~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~-~~~~~d~~t~~W~~~~---~~~~~r~~~~~~~~~~~iyv~gG~~~~--  179 (352)
                      .+.+|..|+++.+++++|+|||......... +++++|..+..|....   ..|.+|++|.++.++++||++||....  
T Consensus        57 ~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~  136 (482)
T KOG0379|consen   57 GPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYR  136 (482)
T ss_pred             CcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCC
Confidence            3378999999999999999999765522222 6999999999997654   456889999999999999999998843  


Q ss_pred             --CceEEEeCCCCcEEEec---CCCCcccceeEEEECCEEEEEccCCCCC-CceEEEEEeCCCCceeecCC---CCCCCC
Q 045821          180 --HSWDVYDPRTNNWKLHT---EPNIFTEIEDSFVMDGKIYIRCSASAAT-SHVCALVYEPSTDSWLHADA---NMASGW  250 (352)
Q Consensus       180 --~~v~~yd~~t~~W~~~~---~~~~~~~~~~~~~~~g~iyv~GG~~~~~-~~~~i~~yd~~~~~W~~~~~---~~~~~~  250 (352)
                        ++++.||+.|++|+.+.   .+|+++..|+++++++++||+||..... ..+++++||+.+.+|.++..   .+.++.
T Consensus       137 ~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~  216 (482)
T KOG0379|consen  137 NLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRY  216 (482)
T ss_pred             ChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCC
Confidence              79999999999999886   3688889999999999999999988766 67799999999999998854   233344


Q ss_pred             CCcEEEECCEEEEEecCC-C----CeEEEEeCCCCceEEcc---CCCCCcCCCCceEEEeCCEEEEEcCCce--------
Q 045821          251 RGPAVVVDDALYVLDQSS-G----TKLMMWQKESREWSPVG---RLSTLLTRPPCKLVAIGKTIFVIGKGCS--------  314 (352)
Q Consensus       251 ~~~~~~~~~~l~~~gg~~-~----~~v~~yd~~~~~W~~~~---~~~~~~~~~~~~~~~~~~~i~v~gG~~~--------  314 (352)
                      .+..++.+++++++||.. +    ++++.+|+.+.+|..+.   ..|.  +|..+..+..+++++++||...        
T Consensus       217 gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~--~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~  294 (482)
T KOG0379|consen  217 GHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPS--PRSGHSLTVSGDHLLLFGGGTDPKQEPLGD  294 (482)
T ss_pred             CceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCC--CcceeeeEEECCEEEEEcCCcccccccccc
Confidence            455578899999998876 3    79999999999999665   3343  6888888899999999998653        


Q ss_pred             EEEEEcCCcccccceEEe
Q 045821          315 AVVIDVGNIGNIGGIMVS  332 (352)
Q Consensus       315 ~~~~d~~~~~w~~~~~~~  332 (352)
                      .+.+|.+...|.+.....
T Consensus       295 ~~~l~~~~~~w~~~~~~~  312 (482)
T KOG0379|consen  295 LYGLDLETLVWSKVESVG  312 (482)
T ss_pred             cccccccccceeeeeccc
Confidence            345888888898755554

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.91  E-value=7.7e-23  Score=175.86  Aligned_cols=223  Identities=13%  Similarity=0.191  Sum_probs=174.2

Q ss_pred             cCCcceEEEEE--CCEEEEEeCC--CCC-CCCCCeEEEEECCCCeeEec--CCCCCcceeeeeEEE-CCEEEEEeCCCCC
Q 045821          108 LRRKGMGFEVL--GKNAYLLGGC--GWS-EDATSEVYCYDASMNTWTDA--APMSTARCYFPCGVL-NQKIYCIGGLGDT  179 (352)
Q Consensus       108 ~~~~~~~~~~~--~~~iyv~GG~--~~~-~~~~~~~~~~d~~t~~W~~~--~~~~~~r~~~~~~~~-~~~iyv~gG~~~~  179 (352)
                      .+|.++++.+.  .+.+++|||.  ++. ....++++.||..+++|+.+  |+.|.||+.|.++++ .+.+|++||.-..
T Consensus        65 spRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaS  144 (521)
T KOG1230|consen   65 SPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFAS  144 (521)
T ss_pred             CCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCC
Confidence            67888777666  5689999994  322 24578999999999999976  456789999988888 4899999995432


Q ss_pred             ---------CceEEEeCCCCcEEEecC--CCCcccceeEEEECCEEEEEccCCCCC----CceEEEEEeCCCCceeecCC
Q 045821          180 ---------HSWDVYDPRTNNWKLHTE--PNIFTEIEDSFVMDGKIYIRCSASAAT----SHVCALVYEPSTDSWLHADA  244 (352)
Q Consensus       180 ---------~~v~~yd~~t~~W~~~~~--~~~~~~~~~~~~~~g~iyv~GG~~~~~----~~~~i~~yd~~~~~W~~~~~  244 (352)
                               .++|.||..|++|+++..  -|.+|.+|-+++...+|++|||.....    +.+++++||+.+-+|+++.+
T Consensus       145 Pnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep  224 (521)
T KOG1230|consen  145 PNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP  224 (521)
T ss_pred             cchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC
Confidence                     999999999999999964  466788888999999999999988643    34599999999999999966


Q ss_pred             CC--CCCCCCc--EEEECCEEEEEecCCC-------------CeEEEEeCCC-----CceEEccCCC-CCcCCCCceEEE
Q 045821          245 NM--ASGWRGP--AVVVDDALYVLDQSSG-------------TKLMMWQKES-----REWSPVGRLS-TLLTRPPCKLVA  301 (352)
Q Consensus       245 ~~--~~~~~~~--~~~~~~~l~~~gg~~~-------------~~v~~yd~~~-----~~W~~~~~~~-~~~~~~~~~~~~  301 (352)
                      .-  +.++++.  ++.-+|.||+.||+..             ++++.++++.     =+|+.+.... .+.+|.++++++
T Consensus       225 sga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~v  304 (521)
T KOG1230|consen  225 SGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAV  304 (521)
T ss_pred             CCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEE
Confidence            32  3444444  3455999999999764             6899999988     4588886432 223688888777


Q ss_pred             e-CCEEEEEcCCc---------------eEEEEEcCCcccccceE
Q 045821          302 I-GKTIFVIGKGC---------------SAVVIDVGNIGNIGGIM  330 (352)
Q Consensus       302 ~-~~~i~v~gG~~---------------~~~~~d~~~~~w~~~~~  330 (352)
                      . +++-|.|||..               +.+.||...++|.++..
T Consensus       305 a~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ql  349 (521)
T KOG1230|consen  305 AKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQL  349 (521)
T ss_pred             ecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhhh
Confidence            6 55899999955               36679999999987633

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.90  E-value=6.6e-23  Score=180.60  Aligned_cols=264  Identities=17%  Similarity=0.199  Sum_probs=196.9

Q ss_pred             hhcccccC-hhhHHHHhhCCCC--CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEE
Q 045821           47 RWRGLLHS-EEWCAYRRKHNLD--ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAY  123 (352)
Q Consensus        47 ~W~~l~~s-~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iy  123 (352)
                      +|+.+..+ ...+++|+.|...  ...|.+|||.|..-..++++||.  .++.|..-......+.+.+.|..+..+.+||
T Consensus        18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNT--atnqWf~PavrGDiPpgcAA~GfvcdGtril   95 (830)
T KOG4152|consen   18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNT--ATNQWFAPAVRGDIPPGCAAFGFVCDGTRIL   95 (830)
T ss_pred             ceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhcc--ccceeecchhcCCCCCchhhcceEecCceEE
Confidence            57766543 2345556555433  88899999986655677899999  9999976544333336677888888999999


Q ss_pred             EEeCCCCCCCCCCeEEEEECCCCeeEecCC-------CCCcceeeeeEEECCEEEEEeCCCCC------------CceEE
Q 045821          124 LLGGCGWSEDATSEVYCYDASMNTWTDAAP-------MSTARCYFPCGVLNQKIYCIGGLGDT------------HSWDV  184 (352)
Q Consensus       124 v~GG~~~~~~~~~~~~~~d~~t~~W~~~~~-------~~~~r~~~~~~~~~~~iyv~gG~~~~------------~~v~~  184 (352)
                      +|||..+....+++++-.....-.|+++.+       +|-||.+|+...++++-|+|||...+            +++++
T Consensus        96 vFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~  175 (830)
T KOG4152|consen   96 VFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYI  175 (830)
T ss_pred             EEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEE
Confidence            999988777888888766666666777753       35689999999999999999996432            77777


Q ss_pred             EeCCCC----cEEEec---CCCCcccceeEEEE------CCEEEEEccCCCCCCceEEEEEeCCCCceeecCC---CCCC
Q 045821          185 YDPRTN----NWKLHT---EPNIFTEIEDSFVM------DGKIYIRCSASAATSHVCALVYEPSTDSWLHADA---NMAS  248 (352)
Q Consensus       185 yd~~t~----~W~~~~---~~~~~~~~~~~~~~------~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~---~~~~  248 (352)
                      .+..-+    .|...-   ..|.++..|.++++      ..++||+||+.+ -...++|..|+.+-+|++..-   .+-+
T Consensus       176 leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G-~RLgDLW~Ldl~Tl~W~kp~~~G~~PlP  254 (830)
T KOG4152|consen  176 LELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG-CRLGDLWTLDLDTLTWNKPSLSGVAPLP  254 (830)
T ss_pred             EEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc-ccccceeEEecceeecccccccCCCCCC
Confidence            777644    486543   36777888888777      348999998874 344589999999999998743   2333


Q ss_pred             CCCCcEEEECCEEEEEecCCC------------------CeEEEEeCCCCceEEcc-----CCCCCcCCCCceEEEeCCE
Q 045821          249 GWRGPAVVVDDALYVLDQSSG------------------TKLMMWQKESREWSPVG-----RLSTLLTRPPCKLVAIGKT  305 (352)
Q Consensus       249 ~~~~~~~~~~~~l~~~gg~~~------------------~~v~~yd~~~~~W~~~~-----~~~~~~~~~~~~~~~~~~~  305 (352)
                      +.-+.+..+++|+|++||.--                  +.+-++|++++.|..+-     +-..+..|.+++.+.++.+
T Consensus       255 RSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtR  334 (830)
T KOG4152|consen  255 RSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTR  334 (830)
T ss_pred             cccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccE
Confidence            334556788999999999311                  57889999999999874     1223346888999999999


Q ss_pred             EEEEcCCc
Q 045821          306 IFVIGKGC  313 (352)
Q Consensus       306 i~v~gG~~  313 (352)
                      +|+-.|++
T Consensus       335 lYiWSGRD  342 (830)
T KOG4152|consen  335 LYIWSGRD  342 (830)
T ss_pred             EEEEeccc
Confidence            99999876

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.90  E-value=1.9e-22  Score=173.43  Aligned_cols=257  Identities=14%  Similarity=0.147  Sum_probs=183.7

Q ss_pred             cCCCcHHHHHHhhccCccccchhhhhhhhhhcccccChhhHHHHhhCC----CCCCEEEEEEecCCCCc-----eeEEEe
Q 045821           18 ISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHN----LDETWIYAFCRDNKLER-----VCCYVL   88 (352)
Q Consensus        18 ~~~lp~dl~~~il~r~p~~~~~~l~~v~k~W~~l~~s~~~~~~~~~~~----~~~~~l~~~gg~~~~~~-----~~~~~~   88 (352)
                      ...|-++.+.+|+..+.++......-.+    .-.++     +|....    ...+.|+++||.-..+.     ..+|.|
T Consensus        33 ~~e~de~~i~~~iq~~eaK~~e~~~e~~----~~~Ps-----pRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Y  103 (521)
T KOG1230|consen   33 NEELDEADIAEIIQSLEAKQIEHVVETS----VPPPS-----PRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSY  103 (521)
T ss_pred             CcccchHHHHHHHHhhhhhccceeeecc----CCCCC-----CCCCcceeeccCcceeEEecceeecceeEEEeeeeeEE
Confidence            3445577888888888776542211000    00111     122111    11557999998522221     247899


Q ss_pred             cCCCCCCCeeEeccCCCcccCCcceEEEEEC-CEEEEEeCCCCCC-----CCCCeEEEEECCCCeeEecCC--CCCccee
Q 045821           89 DPNSTRRSWKMIHELPARTLRRKGMGFEVLG-KNAYLLGGCGWSE-----DATSEVYCYDASMNTWTDAAP--MSTARCY  160 (352)
Q Consensus        89 d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-~~iyv~GG~~~~~-----~~~~~~~~~d~~t~~W~~~~~--~~~~r~~  160 (352)
                      |.  .+++|+++..... |.+|..|.++++- |.+|+|||.-...     ...+++|.||..+++|..+..  -|.||++
T Consensus       104 n~--k~~eWkk~~spn~-P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSG  180 (521)
T KOG1230|consen  104 NT--KKNEWKKVVSPNA-PPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSG  180 (521)
T ss_pred             ec--cccceeEeccCCC-cCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCcc
Confidence            99  9999999875433 3678888887774 8999999964321     246799999999999998854  5789999


Q ss_pred             eeeEEECCEEEEEeCCCCC-------CceEEEeCCCCcEEEecCC---CCcccceeEEEE-CCEEEEEccCCC-------
Q 045821          161 FPCGVLNQKIYCIGGLGDT-------HSWDVYDPRTNNWKLHTEP---NIFTEIEDSFVM-DGKIYIRCSASA-------  222 (352)
Q Consensus       161 ~~~~~~~~~iyv~gG~~~~-------~~v~~yd~~t~~W~~~~~~---~~~~~~~~~~~~-~g~iyv~GG~~~-------  222 (352)
                      |.++....++++|||..+.       +++++||+.|-+|.++.+.   |.+|.+++..+. +|.|||.||+..       
T Consensus       181 HRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~  260 (521)
T KOG1230|consen  181 HRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDV  260 (521)
T ss_pred             ceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhh
Confidence            9999999999999997654       9999999999999999753   456667766666 999999999763       


Q ss_pred             --CCCceEEEEEeCCC-----CceeecCC--CCCCCCCCcE--EEECCEEEEEecCCC-------------CeEEEEeCC
Q 045821          223 --ATSHVCALVYEPST-----DSWLHADA--NMASGWRGPA--VVVDDALYVLDQSSG-------------TKLMMWQKE  278 (352)
Q Consensus       223 --~~~~~~i~~yd~~~-----~~W~~~~~--~~~~~~~~~~--~~~~~~l~~~gg~~~-------------~~v~~yd~~  278 (352)
                        +...++++..++.+     -.|+.+.+  ..+.++++.+  +.-+++-+.+||.-.             ++++.||..
T Consensus       261 dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt  340 (521)
T KOG1230|consen  261 DKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLT  340 (521)
T ss_pred             hcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecc
Confidence              22344899999877     56888865  2334444444  345779999999432             789999999


Q ss_pred             CCceEEcc
Q 045821          279 SREWSPVG  286 (352)
Q Consensus       279 ~~~W~~~~  286 (352)
                      .++|+...
T Consensus       341 ~nrW~~~q  348 (521)
T KOG1230|consen  341 RNRWSEGQ  348 (521)
T ss_pred             cchhhHhh
Confidence            99998663

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.80  E-value=3.1e-18  Score=151.37  Aligned_cols=218  Identities=15%  Similarity=0.201  Sum_probs=157.9

Q ss_pred             CCCCeeEeccCCC-cccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEec---CCCCCcceeeeeEEECC
Q 045821           93 TRRSWKMIHELPA-RTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDA---APMSTARCYFPCGVLNQ  168 (352)
Q Consensus        93 ~~~~w~~~~~~~~-~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~---~~~~~~r~~~~~~~~~~  168 (352)
                      ....|+.+..... -+.+|++|.++++...|.+|||-++  ...+++++||..+++|..-   .+.|.+.+.|..+..+.
T Consensus        15 ~~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNE--GiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGt   92 (830)
T KOG4152|consen   15 NVVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNE--GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGT   92 (830)
T ss_pred             cccceEEEecccCCCCCccccchheeeeeeEEEecCCcc--cchhhhhhhccccceeecchhcCCCCCchhhcceEecCc
Confidence            5567887765432 2368999999999999999999765  4578899999999999753   46788888888888899


Q ss_pred             EEEEEeCCCCC----CceEEEeCCCCcEEEecC-------CCCcccceeEEEECCEEEEEccCCCCC---------CceE
Q 045821          169 KIYCIGGLGDT----HSWDVYDPRTNNWKLHTE-------PNIFTEIEDSFVMDGKIYIRCSASAAT---------SHVC  228 (352)
Q Consensus       169 ~iyv~gG~~~~----~~v~~yd~~t~~W~~~~~-------~~~~~~~~~~~~~~g~iyv~GG~~~~~---------~~~~  228 (352)
                      +||+|||.-..    ++++......-.|+++.+       +|-++-+|+...++++-|+|||.....         +.++
T Consensus        93 rilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnD  172 (830)
T KOG4152|consen   93 RILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLND  172 (830)
T ss_pred             eEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcc
Confidence            99999995432    555444444456777753       233455666677799999999975422         2347


Q ss_pred             EEEEeCCCC----ceeecC---CCCCCCCCCcEEEE------CCEEEEEecCCC---CeEEEEeCCCCceEEccCC-CCC
Q 045821          229 ALVYEPSTD----SWLHAD---ANMASGWRGPAVVV------DDALYVLDQSSG---TKLMMWQKESREWSPVGRL-STL  291 (352)
Q Consensus       229 i~~yd~~~~----~W~~~~---~~~~~~~~~~~~~~------~~~l~~~gg~~~---~~v~~yd~~~~~W~~~~~~-~~~  291 (352)
                      ++..++..+    .|...-   ..++.+.++.++..      ..++|++||..+   .++|.+|+++.+|++...- -.+
T Consensus       173 lY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~P  252 (830)
T KOG4152|consen  173 LYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAP  252 (830)
T ss_pred             eEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccCCCC
Confidence            777776543    386542   23344444455443      347999999877   7999999999999977521 122


Q ss_pred             cCCCCceEEEeCCEEEEEcCC
Q 045821          292 LTRPPCKLVAIGKTIFVIGKG  312 (352)
Q Consensus       292 ~~~~~~~~~~~~~~i~v~gG~  312 (352)
                      ++|..+....+++|+|||||-
T Consensus       253 lPRSLHsa~~IGnKMyvfGGW  273 (830)
T KOG4152|consen  253 LPRSLHSATTIGNKMYVFGGW  273 (830)
T ss_pred             CCcccccceeecceeEEecce
Confidence            468888999999999999983

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.80  E-value=1.2e-17  Score=142.05  Aligned_cols=237  Identities=21%  Similarity=0.323  Sum_probs=172.9

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCC----CCCCCeEEEEEC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWS----EDATSEVYCYDA  143 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~~d~  143 (352)
                      ++.+|+--|.   ....+|.+|.++....|+++...|.  .+|.+...++++++||+|||....    ....+++++|||
T Consensus        46 g~~~YVGLGs---~G~afy~ldL~~~~k~W~~~a~FpG--~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p  120 (381)
T COG3055          46 GDTVYVGLGS---AGTAFYVLDLKKPGKGWTKIADFPG--GARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDP  120 (381)
T ss_pred             cceEEEEecc---CCccceehhhhcCCCCceEcccCCC--cccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecC
Confidence            6788986553   3457888888667789999999986  578899999999999999996432    345789999999


Q ss_pred             CCCeeEecCC-CCCcceeeeeEEECC-EEEEEeCCCCC-------------------------------------CceEE
Q 045821          144 SMNTWTDAAP-MSTARCYFPCGVLNQ-KIYCIGGLGDT-------------------------------------HSWDV  184 (352)
Q Consensus       144 ~t~~W~~~~~-~~~~r~~~~~~~~~~-~iyv~gG~~~~-------------------------------------~~v~~  184 (352)
                      .+++|..+.. .|+....+..+.+++ +||++||+...                                     ..+..
T Consensus       121 ~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~s  200 (381)
T COG3055         121 STNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLS  200 (381)
T ss_pred             CCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccc
Confidence            9999998865 355566777888876 99999997421                                     78899


Q ss_pred             EeCCCCcEEEecCCCCcccceeEEEE-CCEEEEEccCCCCC-CceEEEEEeC--CCCceeecCCCCCCCCCC---cE---
Q 045821          185 YDPRTNNWKLHTEPNIFTEIEDSFVM-DGKIYIRCSASAAT-SHVCALVYEP--STDSWLHADANMASGWRG---PA---  254 (352)
Q Consensus       185 yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~iyv~GG~~~~~-~~~~i~~yd~--~~~~W~~~~~~~~~~~~~---~~---  254 (352)
                      |||++++|+.+...|......++++. ++++.++-|....+ ....+..++.  ...+|..+++.+......   .+   
T Consensus       201 y~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf  280 (381)
T COG3055         201 YDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAF  280 (381)
T ss_pred             cccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceec
Confidence            99999999998866655544455554 56577775654333 2335556655  456899987643332221   11   


Q ss_pred             -EEECCEEEEEecCCC-----------------------CeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEc
Q 045821          255 -VVVDDALYVLDQSSG-----------------------TKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIG  310 (352)
Q Consensus       255 -~~~~~~l~~~gg~~~-----------------------~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~g  310 (352)
                       -..++.+.+.||..-                       ++|+.+|  +++|+.++.+|.  .......+..+++||+||
T Consensus       281 ~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~--~l~YG~s~~~nn~vl~IG  356 (381)
T COG3055         281 SGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQ--GLAYGVSLSYNNKVLLIG  356 (381)
T ss_pred             cceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCC--CccceEEEecCCcEEEEc
Confidence             134677777776321                       4788888  899999999998  455566677899999999


Q ss_pred             CCc
Q 045821          311 KGC  313 (352)
Q Consensus       311 G~~  313 (352)
                      |..
T Consensus       357 GE~  359 (381)
T COG3055         357 GET  359 (381)
T ss_pred             ccc
Confidence            965

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.69  E-value=3.6e-15  Score=127.21  Aligned_cols=207  Identities=23%  Similarity=0.357  Sum_probs=148.3

Q ss_pred             EeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCC--CeeEecCCCC-CcceeeeeEEECCEEEEEeC
Q 045821           99 MIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASM--NTWTDAAPMS-TARCYFPCGVLNQKIYCIGG  175 (352)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t--~~W~~~~~~~-~~r~~~~~~~~~~~iyv~gG  175 (352)
                      .+|.+|   .+..+-+.+.+++.+||-=|..+     .+.+..|...  ..|+.++..| .+|.....++++++||++||
T Consensus        29 ~lPdlP---vg~KnG~Ga~ig~~~YVGLGs~G-----~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG  100 (381)
T COG3055          29 QLPDLP---VGFKNGAGALIGDTVYVGLGSAG-----TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGG  100 (381)
T ss_pred             cCCCCC---ccccccccceecceEEEEeccCC-----ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeec
Confidence            345555   34444467788889999866333     4567777763  5699999988 57888899999999999999


Q ss_pred             CCCC--------CceEEEeCCCCcEEEecCC-CCcccceeEEEECC-EEEEEccCCCCC---------------------
Q 045821          176 LGDT--------HSWDVYDPRTNNWKLHTEP-NIFTEIEDSFVMDG-KIYIRCSASAAT---------------------  224 (352)
Q Consensus       176 ~~~~--------~~v~~yd~~t~~W~~~~~~-~~~~~~~~~~~~~g-~iyv~GG~~~~~---------------------  224 (352)
                      ....        +++++|||.+++|.++... |..-..+.++.+++ +||++||.+..-                     
T Consensus       101 ~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i  180 (381)
T COG3055         101 YGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKI  180 (381)
T ss_pred             cccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHH
Confidence            7643        8999999999999998753 33344456677777 999999977311                     


Q ss_pred             -------------CceEEEEEeCCCCceeecCCCCCCCCCCcEEEE-CCEEEEEecCCC-----CeEEEEeCC--CCceE
Q 045821          225 -------------SHVCALVYEPSTDSWLHADANMASGWRGPAVVV-DDALYVLDQSSG-----TKLMMWQKE--SREWS  283 (352)
Q Consensus       225 -------------~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~l~~~gg~~~-----~~v~~yd~~--~~~W~  283 (352)
                                   ....++.||+++++|+.+...+-...++++++. ++++.++.|+-.     ..+.+++..  ..+|.
T Consensus       181 ~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~  260 (381)
T COG3055         181 IAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWL  260 (381)
T ss_pred             HHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeee
Confidence                         112789999999999999876767777777654 666888887543     345666555  56799


Q ss_pred             EccCCCCCcCCCCceEE-----EeCCEEEEEcCCc
Q 045821          284 PVGRLSTLLTRPPCKLV-----AIGKTIFVIGKGC  313 (352)
Q Consensus       284 ~~~~~~~~~~~~~~~~~-----~~~~~i~v~gG~~  313 (352)
                      .++++|.+.....-.++     ..++++.+.||.+
T Consensus       261 ~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAn  295 (381)
T COG3055         261 KLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGAN  295 (381)
T ss_pred             eccCCCCCCCCCccccceeccceeCCeEEEecCCC
Confidence            99988865433322222     2467788888755

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=99.54  E-value=1.3e-14  Score=128.44  Aligned_cols=234  Identities=16%  Similarity=0.172  Sum_probs=155.0

Q ss_pred             CCCCeeEeccCC-------CcccCCcceEEEEECC--EEEEEeCCCCCCCCCCeEEEEECCCCeeEecCC---CCCccee
Q 045821           93 TRRSWKMIHELP-------ARTLRRKGMGFEVLGK--NAYLLGGCGWSEDATSEVYCYDASMNTWTDAAP---MSTARCY  160 (352)
Q Consensus        93 ~~~~w~~~~~~~-------~~~~~~~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~---~~~~r~~  160 (352)
                      -+..|.++++..       ..++.|.+|..+...+  .||++||+++. +.+.++|+|+...+.|..+..   .|..|..
T Consensus       237 y~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~-~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsC  315 (723)
T KOG2437|consen  237 YKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGT-QDLADFWAYSVKENQWTCINRDTEGPGARSC  315 (723)
T ss_pred             ccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccc-hhHHHHHhhcCCcceeEEeecCCCCCcchhh
Confidence            567788777654       3457788998888865  89999999987 778999999999999998753   5778999


Q ss_pred             eeeEEECC--EEEEEeCCCCC---------CceEEEeCCCCcEEEecC------CCCcccceeEEEECCE--EEEEccCC
Q 045821          161 FPCGVLNQ--KIYCIGGLGDT---------HSWDVYDPRTNNWKLHTE------PNIFTEIEDSFVMDGK--IYIRCSAS  221 (352)
Q Consensus       161 ~~~~~~~~--~iyv~gG~~~~---------~~v~~yd~~t~~W~~~~~------~~~~~~~~~~~~~~g~--iyv~GG~~  221 (352)
                      |.++..-.  ++|++|-+-..         +++|+||..++.|.-++.      -|.....|..++.+.+  |||+||..
T Consensus       316 HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~  395 (723)
T KOG2437|consen  316 HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI  395 (723)
T ss_pred             hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCee
Confidence            98887644  89999986432         899999999999998862      1223344566666655  99999976


Q ss_pred             CCCC---ceEEEEEeCCCCceeecCCCCCC----------CCCC-c-EEEECCEEEEEecCCC----CeEEEEeCCCCce
Q 045821          222 AATS---HVCALVYEPSTDSWLHADANMAS----------GWRG-P-AVVVDDALYVLDQSSG----TKLMMWQKESREW  282 (352)
Q Consensus       222 ~~~~---~~~i~~yd~~~~~W~~~~~~~~~----------~~~~-~-~~~~~~~l~~~gg~~~----~~v~~yd~~~~~W  282 (352)
                      -...   ...++.||.....|..+......          +..+ + .+..++.+|++||...    .-.+.||+..+.=
T Consensus       396 ~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E~~  475 (723)
T KOG2437|consen  396 LTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSEHV  475 (723)
T ss_pred             ccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceeccccc
Confidence            4333   34899999999999877431111          0000 1 2345778999998665    2235565554443


Q ss_pred             EEccCC--------CCCcCCCCceEEEeCCEEEEEcC------------CceEEEEEcCCccccc
Q 045821          283 SPVGRL--------STLLTRPPCKLVAIGKTIFVIGK------------GCSAVVIDVGNIGNIG  327 (352)
Q Consensus       283 ~~~~~~--------~~~~~~~~~~~~~~~~~i~v~gG------------~~~~~~~d~~~~~w~~  327 (352)
                      ..+...        |.........+-.-...|.+.-|            +++++||++.++.|..
T Consensus       476 ~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~c  540 (723)
T KOG2437|consen  476 DIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSC  540 (723)
T ss_pred             hhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhh
Confidence            333211        11001111111122344554433            3368889999998863

>PF13964 Kelch_6: Kelch motif

Probab=99.28  E-value=1.4e-11  Score=77.67  Aligned_cols=50  Identities=36%  Similarity=0.605  Sum_probs=45.6

Q ss_pred             CCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcc
Q 045821          109 RRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTAR  158 (352)
Q Consensus       109 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r  158 (352)
                      +|.++++++++++||++||........+++++||+.+++|+.+++||.||
T Consensus         1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR   50 (50)
T PF13964_consen    1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR   50 (50)
T ss_pred             CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence            47889999999999999998775577899999999999999999999887

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=99.25  E-value=5.9e-12  Score=111.83  Aligned_cols=239  Identities=16%  Similarity=0.174  Sum_probs=156.9

Q ss_pred             hhhcccccCh-------hhHHHHhhCCCC----CCEEEEEEecCCCCce-eEEEecCCCCCCCeeEeccCCCcccCCcce
Q 045821           46 SRWRGLLHSE-------EWCAYRRKHNLD----ETWIYAFCRDNKLERV-CCYVLDPNSTRRSWKMIHELPARTLRRKGM  113 (352)
Q Consensus        46 k~W~~l~~s~-------~~~~~~~~~~~~----~~~l~~~gg~~~~~~~-~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~  113 (352)
                      -+|..++...       ..+..|..|.+.    ++-||+.||.+..... .+|.|+-  ..+.|..+..-...|..|.+|
T Consensus       239 ~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v--~e~~W~~iN~~t~~PG~RsCH  316 (723)
T KOG2437|consen  239 PRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSV--KENQWTCINRDTEGPGARSCH  316 (723)
T ss_pred             ccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcC--CcceeEEeecCCCCCcchhhh
Confidence            3577665433       234456666655    5689999999766654 5889988  889999886544334778888


Q ss_pred             EEEEECC--EEEEEeCCCCC-----CCCCCeEEEEECCCCeeEecCC------CCCcceeeeeEEECCE--EEEEeCCCC
Q 045821          114 GFEVLGK--NAYLLGGCGWS-----EDATSEVYCYDASMNTWTDAAP------MSTARCYFPCGVLNQK--IYCIGGLGD  178 (352)
Q Consensus       114 ~~~~~~~--~iyv~GG~~~~-----~~~~~~~~~~d~~t~~W~~~~~------~~~~r~~~~~~~~~~~--iyv~gG~~~  178 (352)
                      ..+....  ++|+.|-+-+.     ....+++|.||..++.|..+.-      -|...+.|.+++.+.+  |||+||+.-
T Consensus       317 RMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~  396 (723)
T KOG2437|consen  317 RMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRIL  396 (723)
T ss_pred             hhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeec
Confidence            8887765  89999976432     2456799999999999998852      2344667888888766  999999753


Q ss_pred             C------CceEEEeCCCCcEEEecCC----------CCcccce--eEEEECCEEEEEccCCCCCCceEEEEEeCCCCcee
Q 045821          179 T------HSWDVYDPRTNNWKLHTEP----------NIFTEIE--DSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWL  240 (352)
Q Consensus       179 ~------~~v~~yd~~t~~W~~~~~~----------~~~~~~~--~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~  240 (352)
                      .      ...+.||.....|..+..-          ...+-++  -++.-+..+|++||.......+-...||+....=.
T Consensus       397 ~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E~~~  476 (723)
T KOG2437|consen  397 TCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSEHVD  476 (723)
T ss_pred             cCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceeccccch
Confidence            3      7889999999999876521          0111111  13445778999988776666666677766444332


Q ss_pred             ecCC-------CCCCCCCC-cEE--EECCEEEEEecCCC----------CeEEEEeCCCCceEEcc
Q 045821          241 HADA-------NMASGWRG-PAV--VVDDALYVLDQSSG----------TKLMMWQKESREWSPVG  286 (352)
Q Consensus       241 ~~~~-------~~~~~~~~-~~~--~~~~~l~~~gg~~~----------~~v~~yd~~~~~W~~~~  286 (352)
                      .+..       ..+.++.. -++  .-...|...-|...          +..|+|+..++.|..+.
T Consensus       477 ~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~  542 (723)
T KOG2437|consen  477 IISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIY  542 (723)
T ss_pred             hhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHh
Confidence            2211       01111110 011  12345555555322          57899999999998774

>PF13964 Kelch_6: Kelch motif

Probab=99.15  E-value=1.1e-10  Score=73.51  Aligned_cols=46  Identities=28%  Similarity=0.463  Sum_probs=41.7

Q ss_pred             cceeeeeEEECCEEEEEeCCCC-C---CceEEEeCCCCcEEEecCCCCcc
Q 045821          157 ARCYFPCGVLNQKIYCIGGLGD-T---HSWDVYDPRTNNWKLHTEPNIFT  202 (352)
Q Consensus       157 ~r~~~~~~~~~~~iyv~gG~~~-~---~~v~~yd~~t~~W~~~~~~~~~~  202 (352)
                      ||..|+++.++++|||+||... .   +++++||++|++|+++++||.+|
T Consensus         1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR   50 (50)
T PF13964_consen    1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR   50 (50)
T ss_pred             CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence            6889999999999999999877 2   99999999999999999888654

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=99.08  E-value=8.4e-08  Score=81.68  Aligned_cols=188  Identities=12%  Similarity=0.109  Sum_probs=113.5

Q ss_pred             CeEEEEECCCCeeEecCCCCCcce---e-eeeEEEC-----CEEEEEeCCC---CCCceEEEeCCCCcEEEecCCCCcc-
Q 045821          136 SEVYCYDASMNTWTDAAPMSTARC---Y-FPCGVLN-----QKIYCIGGLG---DTHSWDVYDPRTNNWKLHTEPNIFT-  202 (352)
Q Consensus       136 ~~~~~~d~~t~~W~~~~~~~~~r~---~-~~~~~~~-----~~iyv~gG~~---~~~~v~~yd~~t~~W~~~~~~~~~~-  202 (352)
                      ..+.++||.|++|..+|+.+.++.   . .....++     -+|..+....   ....+++|+..+++|+.+...+... 
T Consensus        14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~   93 (230)
T TIGR01640        14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHP   93 (230)
T ss_pred             CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCcc
Confidence            568999999999999986543211   1 0111122     2555554321   1168899999999999987433221 


Q ss_pred             cceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceee-cCCCCCCCC---CCcEEEECCEEEEEecCCC---CeEEEE
Q 045821          203 EIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLH-ADANMASGW---RGPAVVVDDALYVLDQSSG---TKLMMW  275 (352)
Q Consensus       203 ~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~-~~~~~~~~~---~~~~~~~~~~l~~~gg~~~---~~v~~y  275 (352)
                      .....+.++|.||-+...........|.+||..+++|.+ ++.+.....   ....+..+|+|.++.....   -+||+.
T Consensus        94 ~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl  173 (230)
T TIGR01640        94 LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNFDLWVL  173 (230)
T ss_pred             ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCCCCcEEEEEE
Confidence            122367889999998643321222379999999999995 654332211   1223567899998865432   256666


Q ss_pred             e-CCCCceEEccCCCCC-c--CCC--CceEEEeCCEEEEEcCC--ce-EEEEEcCCc
Q 045821          276 Q-KESREWSPVGRLSTL-L--TRP--PCKLVAIGKTIFVIGKG--CS-AVVIDVGNI  323 (352)
Q Consensus       276 d-~~~~~W~~~~~~~~~-~--~~~--~~~~~~~~~~i~v~gG~--~~-~~~~d~~~~  323 (352)
                      + .+.+.|+++-.++.. .  ...  ....+..+++|++....  .. ..+||++++
T Consensus       174 ~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~~  230 (230)
T TIGR01640       174 NDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGEN  230 (230)
T ss_pred             CCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccCC
Confidence            4 446679976544421 1  111  12345567888887653  23 667999874

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=99.02  E-value=8.4e-10  Score=69.12  Aligned_cols=48  Identities=25%  Similarity=0.523  Sum_probs=42.9

Q ss_pred             CCEEEEEeCCC-CCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE
Q 045821          119 GKNAYLLGGCG-WSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL  166 (352)
Q Consensus       119 ~~~iyv~GG~~-~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~  166 (352)
                      ++++||+||.+ ......+++|+||+.+++|+.++++|.||..|+++++
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i   49 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI   49 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence            57899999988 4457789999999999999999999999999998864

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.00  E-value=4.8e-10  Score=69.71  Aligned_cols=47  Identities=34%  Similarity=0.663  Sum_probs=42.6

Q ss_pred             CCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCC
Q 045821          109 RRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMS  155 (352)
Q Consensus       109 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~  155 (352)
                      +|.++++++++++||++||.+......+++++||+.+++|+.+++||
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            47889999999999999999886688999999999999999999876

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.96  E-value=7.4e-10  Score=68.84  Aligned_cols=43  Identities=37%  Similarity=0.612  Sum_probs=38.8

Q ss_pred             cceeeeeEEECCEEEEEeCCCCC----CceEEEeCCCCcEEEecCCC
Q 045821          157 ARCYFPCGVLNQKIYCIGGLGDT----HSWDVYDPRTNNWKLHTEPN  199 (352)
Q Consensus       157 ~r~~~~~~~~~~~iyv~gG~~~~----~~v~~yd~~t~~W~~~~~~~  199 (352)
                      ||..|++++++++||++||....    +++++||+.+++|+.+++||
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            68899999999999999998873    99999999999999998765

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.85  E-value=1.3e-08  Score=63.73  Aligned_cols=47  Identities=30%  Similarity=0.636  Sum_probs=41.1

Q ss_pred             CCcceEEEEECCEEEEEeCC--CCCCCCCCeEEEEECCCCeeEecCCCC
Q 045821          109 RRKGMGFEVLGKNAYLLGGC--GWSEDATSEVYCYDASMNTWTDAAPMS  155 (352)
Q Consensus       109 ~~~~~~~~~~~~~iyv~GG~--~~~~~~~~~~~~~d~~t~~W~~~~~~~  155 (352)
                      +|.+|++++++++||++||.  .......+++++||+.+++|+.+++++
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence            47889999999999999999  444467899999999999999998875

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.83  E-value=3.6e-09  Score=66.32  Aligned_cols=47  Identities=26%  Similarity=0.499  Sum_probs=31.5

Q ss_pred             CCcceEEEEE-CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCC
Q 045821          109 RRKGMGFEVL-GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMS  155 (352)
Q Consensus       109 ~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~  155 (352)
                      +|.+|+++.+ ++.|||+||.+......+++|+||+.+++|+.++++|
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence            4788999988 5899999998876568899999999999999998876

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.81  E-value=1.2e-08  Score=63.76  Aligned_cols=43  Identities=30%  Similarity=0.468  Sum_probs=37.7

Q ss_pred             cceeeeeEEECCEEEEEeCC--CCC----CceEEEeCCCCcEEEecCCC
Q 045821          157 ARCYFPCGVLNQKIYCIGGL--GDT----HSWDVYDPRTNNWKLHTEPN  199 (352)
Q Consensus       157 ~r~~~~~~~~~~~iyv~gG~--~~~----~~v~~yd~~t~~W~~~~~~~  199 (352)
                      ||..|++++++++|||+||+  ...    +++++||+++++|+.+++++
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence            68899999999999999999  222    99999999999999998654

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=98.80  E-value=5.7e-06  Score=70.39  Aligned_cols=194  Identities=9%  Similarity=0.057  Sum_probs=114.4

Q ss_pred             eeEEEecCCCCCCCeeEeccCCCcccCCcc--eEEEE--E-CC-EEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCC
Q 045821           83 VCCYVLDPNSTRRSWKMIHELPARTLRRKG--MGFEV--L-GK-NAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMST  156 (352)
Q Consensus        83 ~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~--~~~~~--~-~~-~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~  156 (352)
                      ...+++||  .|+.|..+|+.+........  .+...  . +. +|..+...... .....+++|+..+++|+.+...+.
T Consensus        14 ~~~~V~NP--~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~~~~Wr~~~~~~~   90 (230)
T TIGR01640        14 KRLVVWNP--STGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLGSNSWRTIECSPP   90 (230)
T ss_pred             CcEEEECC--CCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeCCCCccccccCCC
Confidence            35778899  99999999865421010111  11111  1 11 44444332111 234578999999999999874332


Q ss_pred             c-ceeeeeEEECCEEEEEeCCCC-C--CceEEEeCCCCcEEE-ecCCCCcc---cceeEEEECCEEEEEccCCCCCCceE
Q 045821          157 A-RCYFPCGVLNQKIYCIGGLGD-T--HSWDVYDPRTNNWKL-HTEPNIFT---EIEDSFVMDGKIYIRCSASAATSHVC  228 (352)
Q Consensus       157 ~-r~~~~~~~~~~~iyv~gG~~~-~--~~v~~yd~~t~~W~~-~~~~~~~~---~~~~~~~~~g~iyv~GG~~~~~~~~~  228 (352)
                      . ......+.++|.+|.+..... .  ..+..||..+++|+. ++.|....   .....+.++|+|.++.... ......
T Consensus        91 ~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~-~~~~~~  169 (230)
T TIGR01640        91 HHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKK-DTNNFD  169 (230)
T ss_pred             CccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecC-CCCcEE
Confidence            2 112236778999999875432 1  268999999999995 66433221   1234677799999885432 223357


Q ss_pred             EEEEe-CCCCceeec---CCCCCCCCC----CcEEEECCEEEEEecCC-CCeEEEEeCCCC
Q 045821          229 ALVYE-PSTDSWLHA---DANMASGWR----GPAVVVDDALYVLDQSS-GTKLMMWQKESR  280 (352)
Q Consensus       229 i~~yd-~~~~~W~~~---~~~~~~~~~----~~~~~~~~~l~~~gg~~-~~~v~~yd~~~~  280 (352)
                      ||+.+ .....|+++   +.+......    ...+..+++|++..... +..+..||++++
T Consensus       170 IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~~  230 (230)
T TIGR01640       170 LWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGEN  230 (230)
T ss_pred             EEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccCC
Confidence            88875 345679864   211111111    12356688888876532 224999999875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>smart00612 Kelch Kelch domain

Probab=98.74  E-value=1.9e-08  Score=62.32  Aligned_cols=47  Identities=30%  Similarity=0.485  Sum_probs=41.1

Q ss_pred             EEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECC
Q 045821          121 NAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQ  168 (352)
Q Consensus       121 ~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~  168 (352)
                      +||++||.... ...+++++||+.+++|+.+++|+.+|..++++.+++
T Consensus         1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence            48999998653 567899999999999999999999999999888764

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.74  E-value=1.3e-08  Score=63.80  Aligned_cols=43  Identities=21%  Similarity=0.383  Sum_probs=29.3

Q ss_pred             cceeeeeEEE-CCEEEEEeCCCCC----CceEEEeCCCCcEEEecCCC
Q 045821          157 ARCYFPCGVL-NQKIYCIGGLGDT----HSWDVYDPRTNNWKLHTEPN  199 (352)
Q Consensus       157 ~r~~~~~~~~-~~~iyv~gG~~~~----~~v~~yd~~t~~W~~~~~~~  199 (352)
                      ||..|+++.+ +++||++||....    +++++||+++++|++++++|
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence            6899999998 5899999998764    89999999999999997665

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.66  E-value=3.5e-06  Score=70.98  Aligned_cols=149  Identities=12%  Similarity=0.195  Sum_probs=97.2

Q ss_pred             CeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCC-CceEEEeCCC----CcEEEec-CCCCcccceeEEE
Q 045821          136 SEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDT-HSWDVYDPRT----NNWKLHT-EPNIFTEIEDSFV  209 (352)
Q Consensus       136 ~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~-~~v~~yd~~t----~~W~~~~-~~~~~~~~~~~~~  209 (352)
                      .....||+.+++++.+.-....-+...+..-||++.+.||.... ..+-.|++.+    ..|.+.+ .|...|.+..+..
T Consensus        46 a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~  125 (243)
T PF07250_consen   46 AHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT  125 (243)
T ss_pred             EEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence            34567999999999886432222222222238999999998665 7788898876    5798776 4777888887776


Q ss_pred             E-CCEEEEEccCCCCCCceEEEEEeCCC-----CceeecCC---CCCCCCCCcE-EEECCEEEEEecCCCCeEEEEeCCC
Q 045821          210 M-DGKIYIRCSASAATSHVCALVYEPST-----DSWLHADA---NMASGWRGPA-VVVDDALYVLDQSSGTKLMMWQKES  279 (352)
Q Consensus       210 ~-~g~iyv~GG~~~~~~~~~i~~yd~~~-----~~W~~~~~---~~~~~~~~~~-~~~~~~l~~~gg~~~~~v~~yd~~~  279 (352)
                      + ||+++|+||....    ..+.+....     ..|..+..   ..+...+... +.-+|+||+++..   .-.+||+.+
T Consensus       126 L~DG~vlIvGG~~~~----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~---~s~i~d~~~  198 (243)
T PF07250_consen  126 LPDGRVLIVGGSNNP----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR---GSIIYDYKT  198 (243)
T ss_pred             CCCCCEEEEeCcCCC----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC---CcEEEeCCC
Confidence            6 8999999987721    223333211     11222211   1112222222 4569999999986   678889999


Q ss_pred             Cce-EEccCCCCC
Q 045821          280 REW-SPVGRLSTL  291 (352)
Q Consensus       280 ~~W-~~~~~~~~~  291 (352)
                      +++ .+++.+|..
T Consensus       199 n~v~~~lP~lPg~  211 (243)
T PF07250_consen  199 NTVVRTLPDLPGG  211 (243)
T ss_pred             CeEEeeCCCCCCC
Confidence            987 788888864

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.60  E-value=1.4e-07  Score=58.94  Aligned_cols=43  Identities=23%  Similarity=0.309  Sum_probs=37.8

Q ss_pred             CCEEEEEeCCC--CC---CceEEEeCCCCcEEEecCCCCcccceeEEE
Q 045821          167 NQKIYCIGGLG--DT---HSWDVYDPRTNNWKLHTEPNIFTEIEDSFV  209 (352)
Q Consensus       167 ~~~iyv~gG~~--~~---~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~  209 (352)
                      +++|||+||..  ..   +++++||+.+++|++++++|.+|..|++++
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~   48 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV   48 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence            57899999988  22   999999999999999998999888887765

>smart00612 Kelch Kelch domain

Probab=98.54  E-value=1.5e-07  Score=58.19  Aligned_cols=44  Identities=34%  Similarity=0.579  Sum_probs=38.0

Q ss_pred             EEEEEeCCCCC---CceEEEeCCCCcEEEecCCCCcccceeEEEECC
Q 045821          169 KIYCIGGLGDT---HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDG  212 (352)
Q Consensus       169 ~iyv~gG~~~~---~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g  212 (352)
                      +||++||....   +++++||+.+++|+.+++|+.++..+++++++|
T Consensus         1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence            48999998653   889999999999999999999888888777764

>PLN02772 guanylate kinase

Probab=98.46  E-value=1.6e-06  Score=77.63  Aligned_cols=83  Identities=17%  Similarity=0.177  Sum_probs=68.8

Q ss_pred             cCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecC---CCCCcceeeeeEEE-CCEEEEEeCCCCC-Cce
Q 045821          108 LRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAA---PMSTARCYFPCGVL-NQKIYCIGGLGDT-HSW  182 (352)
Q Consensus       108 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~---~~~~~r~~~~~~~~-~~~iyv~gG~~~~-~~v  182 (352)
                      .++..++++.+++++||+||.+......+.+++||..|++|..-.   ..|.||.+|+++++ +++|+|+++.... .++
T Consensus        23 ~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~~~~  102 (398)
T PLN02772         23 KPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPDDSI  102 (398)
T ss_pred             CCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCccce
Confidence            367889999999999999998775446789999999999998654   56789999999999 5799999976654 777


Q ss_pred             EEEeCCCC
Q 045821          183 DVYDPRTN  190 (352)
Q Consensus       183 ~~yd~~t~  190 (352)
                      |.....|.
T Consensus       103 w~l~~~t~  110 (398)
T PLN02772        103 WFLEVDTP  110 (398)
T ss_pred             EEEEcCCH
Confidence            77776654

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.35  E-value=3.9e-05  Score=64.72  Aligned_cols=141  Identities=14%  Similarity=0.213  Sum_probs=91.1

Q ss_pred             EEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCC----CceeecCC-CCCCCCCCcEE-E
Q 045821          183 DVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPST----DSWLHADA-NMASGWRGPAV-V  256 (352)
Q Consensus       183 ~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~----~~W~~~~~-~~~~~~~~~~~-~  256 (352)
                      ..||+.|++++.+......-+..++..-||++.+.||...  ....+-.|++.+    ..|.+... ....+|+..+. .
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~--G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L  126 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDND--GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL  126 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCc--cccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence            5799999999988643333333344555899999988764  334566787765    67988865 44556666654 4


Q ss_pred             ECCEEEEEecCCCCeEEEEeCC-C--C---ceEEccCCCC--CcCCCCceEEEeCCEEEEEcCCceEEEEEcCCccccc
Q 045821          257 VDDALYVLDQSSGTKLMMWQKE-S--R---EWSPVGRLST--LLTRPPCKLVAIGKTIFVIGKGCSAVVIDVGNIGNIG  327 (352)
Q Consensus       257 ~~~~l~~~gg~~~~~v~~yd~~-~--~---~W~~~~~~~~--~~~~~~~~~~~~~~~i~v~gG~~~~~~~d~~~~~w~~  327 (352)
                      -+|+++++||..+ ..+.|-|. .  .   .|..+.....  ....+-+..+.-+++|++++.. +..+||...+.+.+
T Consensus       127 ~DG~vlIvGG~~~-~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-~s~i~d~~~n~v~~  203 (243)
T PF07250_consen  127 PDGRVLIVGGSNN-PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-GSIIYDYKTNTVVR  203 (243)
T ss_pred             CCCCEEEEeCcCC-CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-CcEEEeCCCCeEEe
Confidence            5899999999876 33444443 2  1   1222222111  1123334555679999999976 57789999986533

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=98.27  E-value=0.0016  Score=58.49  Aligned_cols=38  Identities=16%  Similarity=0.287  Sum_probs=32.9

Q ss_pred             CccCCCcHHHHHHhhccCc-cccchhhhhhhhhhccccc
Q 045821           16 PLISGLPDDIALFCLARVP-RRYHAVLKCVSSRWRGLLH   53 (352)
Q Consensus        16 ~~~~~lp~dl~~~il~r~p-~~~~~~l~~v~k~W~~l~~   53 (352)
                      ..|++||+||+..|..|+| ..++.++++||+.|++-..
T Consensus         2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~   40 (373)
T PLN03215          2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS   40 (373)
T ss_pred             CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence            3689999999999999995 5679999999999996544

>PF13854 Kelch_5: Kelch motif

Probab=98.25  E-value=3.1e-06  Score=50.76  Aligned_cols=38  Identities=26%  Similarity=0.489  Sum_probs=33.9

Q ss_pred             cCCcceEEEEECCEEEEEeCCCC-CCCCCCeEEEEECCC
Q 045821          108 LRRKGMGFEVLGKNAYLLGGCGW-SEDATSEVYCYDASM  145 (352)
Q Consensus       108 ~~~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~d~~t  145 (352)
                      .+|..|+++.++++||++||... .....+++|++|..+
T Consensus         3 ~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s   41 (42)
T PF13854_consen    3 SPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS   41 (42)
T ss_pred             CCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence            68999999999999999999984 557789999999876

>PLN02772 guanylate kinase

Probab=98.22  E-value=9.8e-06  Score=72.68  Aligned_cols=80  Identities=20%  Similarity=0.191  Sum_probs=62.7

Q ss_pred             CcceeeeeEEECCEEEEEeCCCCC----CceEEEeCCCCcEEEec---CCCCcccceeEEEE-CCEEEEEccCCCCCCce
Q 045821          156 TARCYFPCGVLNQKIYCIGGLGDT----HSWDVYDPRTNNWKLHT---EPNIFTEIEDSFVM-DGKIYIRCSASAATSHV  227 (352)
Q Consensus       156 ~~r~~~~~~~~~~~iyv~gG~~~~----~~v~~yd~~t~~W~~~~---~~~~~~~~~~~~~~-~g~iyv~GG~~~~~~~~  227 (352)
                      .|+..++++.+++++||+||..+.    +.+++||..|++|....   ..|.++.+|+++++ +++|+|++++...  ..
T Consensus        23 ~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~--~~  100 (398)
T PLN02772         23 KPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP--DD  100 (398)
T ss_pred             CCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC--cc
Confidence            478889999999999999997654    78999999999998764   46777888888877 6899999755432  24


Q ss_pred             EEEEEeCCCC
Q 045821          228 CALVYEPSTD  237 (352)
Q Consensus       228 ~i~~yd~~~~  237 (352)
                      ++|.....|.
T Consensus       101 ~~w~l~~~t~  110 (398)
T PLN02772        101 SIWFLEVDTP  110 (398)
T ss_pred             ceEEEEcCCH
Confidence            6776665443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.14  E-value=0.0069  Score=55.97  Aligned_cols=228  Identities=13%  Similarity=0.150  Sum_probs=130.7

Q ss_pred             CCCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcc-----cCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEE
Q 045821           67 DETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPART-----LRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCY  141 (352)
Q Consensus        67 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~-----~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~  141 (352)
                      .++.+|+....     -.++.||..+-...|+.-..-....     ......+.+..++.||+.+.       ...++.+
T Consensus        68 ~~~~vy~~~~~-----g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-------~g~l~al  135 (394)
T PRK11138         68 AYNKVYAADRA-----GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-------KGQVYAL  135 (394)
T ss_pred             ECCEEEEECCC-----CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC-------CCEEEEE
Confidence            38888887432     2467778733345576432211000     01122334566888887532       3568999


Q ss_pred             ECCCCe--eEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCc--EEEecCCCCc--ccceeEEEECCEEE
Q 045821          142 DASMNT--WTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNN--WKLHTEPNIF--TEIEDSFVMDGKIY  215 (352)
Q Consensus       142 d~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~--W~~~~~~~~~--~~~~~~~~~~g~iy  215 (352)
                      |..+++  |+.-..  .+ ...+.++.++.+|+..+.   ..++.+|+.+++  |+.-...+..  +....-++.++.+|
T Consensus       136 d~~tG~~~W~~~~~--~~-~~ssP~v~~~~v~v~~~~---g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~  209 (394)
T PRK11138        136 NAEDGEVAWQTKVA--GE-ALSRPVVSDGLVLVHTSN---GMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAI  209 (394)
T ss_pred             ECCCCCCcccccCC--Cc-eecCCEEECCEEEEECCC---CEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEE
Confidence            998876  765322  11 223445568888886542   568999998875  8764332211  11123345577777


Q ss_pred             EEccCCCCCCceEEEEEeCCCC--ceeec-CCCCCC-------CCCCcEEEECCEEEEEecCCCCeEEEEeCCCCc--eE
Q 045821          216 IRCSASAATSHVCALVYEPSTD--SWLHA-DANMAS-------GWRGPAVVVDDALYVLDQSSGTKLMMWQKESRE--WS  283 (352)
Q Consensus       216 v~GG~~~~~~~~~i~~yd~~~~--~W~~~-~~~~~~-------~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~--W~  283 (352)
                      +..+ .     ..+..+|..++  .|+.- ..+...       ......++.++.+|+.+. .+ .++.+|+.+++  |+
T Consensus       210 ~~~~-~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-~g-~l~ald~~tG~~~W~  281 (394)
T PRK11138        210 VGGD-N-----GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-NG-NLVALDLRSGQIVWK  281 (394)
T ss_pred             EEcC-C-----CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-CC-eEEEEECCCCCEEEe
Confidence            7532 2     24777887765  48642 111100       011223566888887663 33 89999998765  86


Q ss_pred             EccCCCCCcCCCCceEEEeCCEEEEEcCCceEEEEEcCCc--cccc
Q 045821          284 PVGRLSTLLTRPPCKLVAIGKTIFVIGKGCSAVVIDVGNI--GNIG  327 (352)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~d~~~~--~w~~  327 (352)
                      .-  ...     ...++..++.||+.......+.+|+++.  .|..
T Consensus       282 ~~--~~~-----~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~  320 (394)
T PRK11138        282 RE--YGS-----VNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQ  320 (394)
T ss_pred             ec--CCC-----ccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence            52  111     1134567899999887767778888643  3643

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.13  E-value=9.2e-07  Score=54.65  Aligned_cols=40  Identities=33%  Similarity=0.483  Sum_probs=34.4

Q ss_pred             cCCCcHHHHHHhhccCccccchhhhhhhhhhcccccChhh
Q 045821           18 ISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEW   57 (352)
Q Consensus        18 ~~~lp~dl~~~il~r~p~~~~~~l~~v~k~W~~l~~s~~~   57 (352)
                      |..||+|++.+|++.++..++.++..|||+|+.++.++.+
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~l   40 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSL   40 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhh
Confidence            5689999999999999999999999999999999876644

>PF13854 Kelch_5: Kelch motif

Probab=98.12  E-value=8.1e-06  Score=48.93  Aligned_cols=36  Identities=22%  Similarity=0.372  Sum_probs=31.9

Q ss_pred             CCCcceeeeeEEECCEEEEEeCCCC--C---CceEEEeCCC
Q 045821          154 MSTARCYFPCGVLNQKIYCIGGLGD--T---HSWDVYDPRT  189 (352)
Q Consensus       154 ~~~~r~~~~~~~~~~~iyv~gG~~~--~---~~v~~yd~~t  189 (352)
                      +|.+|..|+++.++++||++||...  .   +++++||+.+
T Consensus         1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s   41 (42)
T PF13854_consen    1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS   41 (42)
T ss_pred             CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence            4789999999999999999999883  2   9999999876

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=98.04  E-value=0.0066  Score=54.75  Aligned_cols=119  Identities=11%  Similarity=0.253  Sum_probs=82.9

Q ss_pred             EEEEE-CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCC--C------ceEE
Q 045821          114 GFEVL-GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDT--H------SWDV  184 (352)
Q Consensus       114 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~--~------~v~~  184 (352)
                      ....+ +++|+.++..       ....+||..+..-...|.+..+.....++.++++||++......  .      .+++
T Consensus        70 ~F~al~gskIv~~d~~-------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~  142 (342)
T PF07893_consen   70 DFFALHGSKIVAVDQS-------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEA  142 (342)
T ss_pred             EEEEecCCeEEEEcCC-------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEE
Confidence            34444 8889888653       44789999999988888888887777788889999999886443  1      5555


Q ss_pred             E--eC--------CCCcEEEecCCCCcccc-------eeEEEE-CCEEEEE-ccCCCCCCceEEEEEeCCCCceeecCC
Q 045821          185 Y--DP--------RTNNWKLHTEPNIFTEI-------EDSFVM-DGKIYIR-CSASAATSHVCALVYEPSTDSWLHADA  244 (352)
Q Consensus       185 y--d~--------~t~~W~~~~~~~~~~~~-------~~~~~~-~g~iyv~-GG~~~~~~~~~i~~yd~~~~~W~~~~~  244 (352)
                      +  ++        ..-.|+.++++|.....       .+-+++ +..|+|. -+..     ...++||+.+.+|+...+
T Consensus       143 l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~Gd  216 (342)
T PF07893_consen  143 LVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHGD  216 (342)
T ss_pred             eccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeeccc
Confidence            5  42        23368888876543332       233455 5688884 2211     248999999999999976

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.02  E-value=0.012  Score=54.41  Aligned_cols=206  Identities=15%  Similarity=0.178  Sum_probs=112.9

Q ss_pred             eEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCe--eEecCCCCCc----
Q 045821           84 CCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNT--WTDAAPMSTA----  157 (352)
Q Consensus        84 ~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~----  157 (352)
                      .++.||+.+-...|+.-...+.. ..+...+-+..++.+|+..+       ...++.+|+.+++  |+.-...+..    
T Consensus       171 ~l~ald~~tG~~~W~~~~~~~~~-~~~~~~sP~v~~~~v~~~~~-------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~  242 (394)
T PRK11138        171 MLQALNESDGAVKWTVNLDVPSL-TLRGESAPATAFGGAIVGGD-------NGRVSAVLMEQGQLIWQQRISQPTGATEI  242 (394)
T ss_pred             EEEEEEccCCCEeeeecCCCCcc-cccCCCCCEEECCEEEEEcC-------CCEEEEEEccCChhhheeccccCCCccch
Confidence            35677772223346654332210 01111223344666666432       2457888888775  7642111110    


Q ss_pred             ----ceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCc--EEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEE
Q 045821          158 ----RCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNN--WKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALV  231 (352)
Q Consensus       158 ----r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~  231 (352)
                          ....+.++.++.+|+.+..   ..+.++|+.+++  |+.--  ..   ....+..+++||+....      ..+++
T Consensus       243 ~~~~~~~~sP~v~~~~vy~~~~~---g~l~ald~~tG~~~W~~~~--~~---~~~~~~~~~~vy~~~~~------g~l~a  308 (394)
T PRK11138        243 DRLVDVDTTPVVVGGVVYALAYN---GNLVALDLRSGQIVWKREY--GS---VNDFAVDGGRIYLVDQN------DRVYA  308 (394)
T ss_pred             hcccccCCCcEEECCEEEEEEcC---CeEEEEECCCCCEEEeecC--CC---ccCcEEECCEEEEEcCC------CeEEE
Confidence                1123445668999987642   568999998874  87521  11   11245678999997422      25888


Q ss_pred             EeCCCC--ceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCc--eEEccCCCCCcCCCCceEEEeCCEEE
Q 045821          232 YEPSTD--SWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESRE--WSPVGRLSTLLTRPPCKLVAIGKTIF  307 (352)
Q Consensus       232 yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~i~  307 (352)
                      +|..++  .|+.-..  ........+..++.||+... ++ .++.+|..+++  |+.  .++.  .......+..+++||
T Consensus       309 ld~~tG~~~W~~~~~--~~~~~~sp~v~~g~l~v~~~-~G-~l~~ld~~tG~~~~~~--~~~~--~~~~s~P~~~~~~l~  380 (394)
T PRK11138        309 LDTRGGVELWSQSDL--LHRLLTAPVLYNGYLVVGDS-EG-YLHWINREDGRFVAQQ--KVDS--SGFLSEPVVADDKLL  380 (394)
T ss_pred             EECCCCcEEEccccc--CCCcccCCEEECCEEEEEeC-CC-EEEEEECCCCCEEEEE--EcCC--CcceeCCEEECCEEE
Confidence            998765  4864321  11122233557888886543 34 79999998876  443  1211  112234455788888


Q ss_pred             EEcCCceEEEEE
Q 045821          308 VIGKGCSAVVID  319 (352)
Q Consensus       308 v~gG~~~~~~~d  319 (352)
                      +-...-..+.++
T Consensus       381 v~t~~G~l~~~~  392 (394)
T PRK11138        381 IQARDGTVYAIT  392 (394)
T ss_pred             EEeCCceEEEEe
Confidence            876544454444

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.02  E-value=1.1e-06  Score=54.56  Aligned_cols=43  Identities=33%  Similarity=0.426  Sum_probs=35.8

Q ss_pred             ccCCCcHHHHHHhhccCccccchhhhhhhhhhcccccChhhHH
Q 045821           17 LISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCA   59 (352)
Q Consensus        17 ~~~~lp~dl~~~il~r~p~~~~~~l~~v~k~W~~l~~s~~~~~   59 (352)
                      .+.+||+|++.+|+.+++..++..++.|||+|+.++.++.+..
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~   44 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWK   44 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHH
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccH
Confidence            4568999999999999999999999999999999998876643

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=97.87  E-value=6.2e-06  Score=49.18  Aligned_cols=37  Identities=38%  Similarity=0.671  Sum_probs=34.3

Q ss_pred             CcHHHHHHhhccCccccchhhhhhhhhhcccccChhh
Q 045821           21 LPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEW   57 (352)
Q Consensus        21 lp~dl~~~il~r~p~~~~~~l~~v~k~W~~l~~s~~~   57 (352)
                      ||+|++.+|+++++..++.+++.|||+|+.++..+.+
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~   37 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDF   37 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhh
Confidence            7999999999999999999999999999999877654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.85  E-value=0.011  Score=50.26  Aligned_cols=173  Identities=16%  Similarity=0.175  Sum_probs=100.7

Q ss_pred             CeEEEEECCCCe--eEecCCCCCcceeee--eEEECCEEEEEeCCCCCCceEEEeCCCCc--EEEecCCCCcccceeEEE
Q 045821          136 SEVYCYDASMNT--WTDAAPMSTARCYFP--CGVLNQKIYCIGGLGDTHSWDVYDPRTNN--WKLHTEPNIFTEIEDSFV  209 (352)
Q Consensus       136 ~~~~~~d~~t~~--W~~~~~~~~~r~~~~--~~~~~~~iyv~gG~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~  209 (352)
                      ..+..+|+.+++  |+.-.  ..+.....  .+..++.+|+..+.   ..+.++|..+++  |+.-.  +..... ....
T Consensus         3 g~l~~~d~~tG~~~W~~~~--~~~~~~~~~~~~~~~~~v~~~~~~---~~l~~~d~~tG~~~W~~~~--~~~~~~-~~~~   74 (238)
T PF13360_consen    3 GTLSALDPRTGKELWSYDL--GPGIGGPVATAVPDGGRVYVASGD---GNLYALDAKTGKVLWRFDL--PGPISG-APVV   74 (238)
T ss_dssp             SEEEEEETTTTEEEEEEEC--SSSCSSEEETEEEETTEEEEEETT---SEEEEEETTTSEEEEEEEC--SSCGGS-GEEE
T ss_pred             CEEEEEECCCCCEEEEEEC--CCCCCCccceEEEeCCEEEEEcCC---CEEEEEECCCCCEEEEeec--cccccc-eeee
Confidence            457788888776  76622  11122222  34468899998432   779999998774  77643  222222 2477


Q ss_pred             ECCEEEEEccCCCCCCceEEEEEeCCCC--cee-ecCCCCC-CCCCCcEE-EECCEEEEEecCCCCeEEEEeCCCCc--e
Q 045821          210 MDGKIYIRCSASAATSHVCALVYEPSTD--SWL-HADANMA-SGWRGPAV-VVDDALYVLDQSSGTKLMMWQKESRE--W  282 (352)
Q Consensus       210 ~~g~iyv~GG~~~~~~~~~i~~yd~~~~--~W~-~~~~~~~-~~~~~~~~-~~~~~l~~~gg~~~~~v~~yd~~~~~--W  282 (352)
                      .++.+|+....      ..+.++|..++  .|+ .....+. ........ ..++.+|+... .+ .++.+|+++++  |
T Consensus        75 ~~~~v~v~~~~------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g-~l~~~d~~tG~~~w  146 (238)
T PF13360_consen   75 DGGRVYVGTSD------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SG-KLVALDPKTGKLLW  146 (238)
T ss_dssp             ETTEEEEEETT------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CS-EEEEEETTTTEEEE
T ss_pred             cccccccccce------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-cC-cEEEEecCCCcEEE
Confidence            89999988421      16899997665  598 4433222 22222333 34666665543 33 89999999765  6


Q ss_pred             EEccCCCCCcC------CCCceEEEeCCEEEEEcCCceEEEEEcCCcc
Q 045821          283 SPVGRLSTLLT------RPPCKLVAIGKTIFVIGKGCSAVVIDVGNIG  324 (352)
Q Consensus       283 ~~~~~~~~~~~------~~~~~~~~~~~~i~v~gG~~~~~~~d~~~~~  324 (352)
                      +.-...+....      ......+..++.||+..+......+|.++..
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~  194 (238)
T PF13360_consen  147 KYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGE  194 (238)
T ss_dssp             EEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTE
T ss_pred             EeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCC
Confidence            65433332110      1123444456799998877655545888776

...

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=97.83  E-value=0.00087  Score=58.02  Aligned_cols=279  Identities=15%  Similarity=0.163  Sum_probs=133.2

Q ss_pred             cCCCc----HHHHHHhhccCccccchhhhhhhhhhcccccChhhH-HH-----------HhhCCCCCCEEEEEEecCCCC
Q 045821           18 ISGLP----DDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWC-AY-----------RRKHNLDETWIYAFCRDNKLE   81 (352)
Q Consensus        18 ~~~lp----~dl~~~il~r~p~~~~~~l~~v~k~W~~l~~s~~~~-~~-----------~~~~~~~~~~l~~~gg~~~~~   81 (352)
                      +..||    +++++.||+.|...+++....|||+|..++..+..- +.           |.-+...+-..|++--.....
T Consensus        75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~vr~dslWrgl~e~rqw~~~lf~~r~~~~  154 (499)
T KOG0281|consen   75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERMVRTDSLWRGLSERRQWDQYLFKNRPNDG  154 (499)
T ss_pred             HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHhcchHHHHhhhhhccCcchhhccCCCCcC
Confidence            45788    999999999999999999999999999988777431 11           111111122333331110000


Q ss_pred             -----ceeEEEe-----cCCCCCCCeeEeccCCCcc---c-CCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCe
Q 045821           82 -----RVCCYVL-----DPNSTRRSWKMIHELPART---L-RRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNT  147 (352)
Q Consensus        82 -----~~~~~~~-----d~~~~~~~w~~~~~~~~~~---~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~  147 (352)
                           .+....|     |.....+.|..-..+-...   + ...+.-+...++...|-|-      ..+++-++|..+..
T Consensus       155 ~~~~n~f~~~l~pki~~di~~idsNWr~Gr~~~~rinc~Se~skgVYClQYDD~kiVSGl------rDnTikiWD~n~~~  228 (499)
T KOG0281|consen  155 GFPPNSFYRLLYPKIIQDIETIESNWRCGRHLLQRINCRSENSKGVYCLQYDDEKIVSGL------RDNTIKIWDKNSLE  228 (499)
T ss_pred             CcCCCcchhhhhHHHHHHHhhhhcchhccceeeeeecCCcccCCceEEEEecchhhhccc------ccCceEEeccccHH
Confidence                 0000001     1111334453222111000   0 0111112233444444332      23456666765543


Q ss_pred             eEecCCCCCcceeeee-EEECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccce-eEEEECCEEEEEccCCCCCC
Q 045821          148 WTDAAPMSTARCYFPC-GVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIE-DSFVMDGKIYIRCSASAATS  225 (352)
Q Consensus       148 W~~~~~~~~~r~~~~~-~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~-~~~~~~g~iyv~GG~~~~~~  225 (352)
                      -..+   -..+.+... -.+++++.+.|..+  +.+-++|.+|++--+.   ...+... ....+++.+.|....+   .
T Consensus       229 c~~~---L~GHtGSVLCLqyd~rviisGSSD--sTvrvWDv~tge~l~t---lihHceaVLhlrf~ng~mvtcSkD---r  297 (499)
T KOG0281|consen  229 CLKI---LTGHTGSVLCLQYDERVIVSGSSD--STVRVWDVNTGEPLNT---LIHHCEAVLHLRFSNGYMVTCSKD---R  297 (499)
T ss_pred             HHHh---hhcCCCcEEeeeccceEEEecCCC--ceEEEEeccCCchhhH---HhhhcceeEEEEEeCCEEEEecCC---c
Confidence            2211   112222222 22477877777655  7888999988753211   1112211 1122333333432222   1


Q ss_pred             ceEEEEEeCCCCceeecCCCCCCCCCCc---EEEECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEe
Q 045821          226 HVCALVYEPSTDSWLHADANMASGWRGP---AVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAI  302 (352)
Q Consensus       226 ~~~i~~yd~~~~~W~~~~~~~~~~~~~~---~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~  302 (352)
                        .+-++|...-+  .+.-..--..+.+   ++-++++ |++.......+-+|++.+..+...  +..  -+.+-++.-+
T Consensus       298 --siaVWdm~sps--~it~rrVLvGHrAaVNvVdfd~k-yIVsASgDRTikvW~~st~efvRt--l~g--HkRGIAClQY  368 (499)
T KOG0281|consen  298 --SIAVWDMASPT--DITLRRVLVGHRAAVNVVDFDDK-YIVSASGDRTIKVWSTSTCEFVRT--LNG--HKRGIACLQY  368 (499)
T ss_pred             --eeEEEeccCch--HHHHHHHHhhhhhheeeeccccc-eEEEecCCceEEEEeccceeeehh--hhc--ccccceehhc
Confidence              23333332211  1100000011222   2446777 666655555899999887666433  322  2455667778


Q ss_pred             CCEEEEEcCCceEE-EEEcCC
Q 045821          303 GKTIFVIGKGCSAV-VIDVGN  322 (352)
Q Consensus       303 ~~~i~v~gG~~~~~-~~d~~~  322 (352)
                      .+++.|-|..+... ++|++.
T Consensus       369 r~rlvVSGSSDntIRlwdi~~  389 (499)
T KOG0281|consen  369 RDRLVVSGSSDNTIRLWDIEC  389 (499)
T ss_pred             cCeEEEecCCCceEEEEeccc
Confidence            88888888665322 455543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.77  E-value=0.03  Score=51.34  Aligned_cols=173  Identities=14%  Similarity=0.187  Sum_probs=96.0

Q ss_pred             EEECCEEEEEeCCCCCCCCCCeEEEEECCCCe--eEecCCCCCc--------ceeeeeEEECCEEEEEeCCCCCCceEEE
Q 045821          116 EVLGKNAYLLGGCGWSEDATSEVYCYDASMNT--WTDAAPMSTA--------RCYFPCGVLNQKIYCIGGLGDTHSWDVY  185 (352)
Q Consensus       116 ~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~gG~~~~~~v~~y  185 (352)
                      +..++.+|+ |..      ...+..+|+.+++  |+.-...+..        ......+..++.+|+....   ..+.+|
T Consensus       187 ~~~~~~v~~-~~~------~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~---g~l~a~  256 (377)
T TIGR03300       187 VIADGGVLV-GFA------GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ---GRVAAL  256 (377)
T ss_pred             EEECCEEEE-ECC------CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC---CEEEEE
Confidence            445665554 321      2468889988775  7542211111        1122344557888886542   568999


Q ss_pred             eCCCCc--EEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCC--ceeecCCCCCCCCCCcEEEECCEE
Q 045821          186 DPRTNN--WKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTD--SWLHADANMASGWRGPAVVVDDAL  261 (352)
Q Consensus       186 d~~t~~--W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~l  261 (352)
                      |+.+++  |+.-.     ......+..+++||+....      ..+.++|..++  .|+.-..  ........+..++.|
T Consensus       257 d~~tG~~~W~~~~-----~~~~~p~~~~~~vyv~~~~------G~l~~~d~~tG~~~W~~~~~--~~~~~ssp~i~g~~l  323 (377)
T TIGR03300       257 DLRSGRVLWKRDA-----SSYQGPAVDDNRLYVTDAD------GVVVALDRRSGSELWKNDEL--KYRQLTAPAVVGGYL  323 (377)
T ss_pred             ECCCCcEEEeecc-----CCccCceEeCCEEEEECCC------CeEEEEECCCCcEEEccccc--cCCccccCEEECCEE
Confidence            998764  76531     1122334568899987321      25888888765  4865321  111122224467777


Q ss_pred             EEEecCCCCeEEEEeCCCCc--eEEccCCCCCcCCCCceEEEeCCEEEEEcCCceEEE
Q 045821          262 YVLDQSSGTKLMMWQKESRE--WSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCSAVV  317 (352)
Q Consensus       262 ~~~gg~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~  317 (352)
                      |+.+ .++ .++.+|..+++  |+ .. ++.  .......+..+++||+.+..-.++.
T Consensus       324 ~~~~-~~G-~l~~~d~~tG~~~~~-~~-~~~--~~~~~sp~~~~~~l~v~~~dG~l~~  375 (377)
T TIGR03300       324 VVGD-FEG-YLHWLSREDGSFVAR-LK-TDG--SGIASPPVVVGDGLLVQTRDGDLYA  375 (377)
T ss_pred             EEEe-CCC-EEEEEECCCCCEEEE-EE-cCC--CccccCCEEECCEEEEEeCCceEEE
Confidence            7654 344 89999987665  42 21 111  1123445667888887765434443

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.54  E-value=0.041  Score=46.65  Aligned_cols=182  Identities=18%  Similarity=0.228  Sum_probs=108.4

Q ss_pred             EEECCEEEEEeCCCCCCCCCCeEEEEECCCCe--eEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCC--c
Q 045821          116 EVLGKNAYLLGGCGWSEDATSEVYCYDASMNT--WTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTN--N  191 (352)
Q Consensus       116 ~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~--~  191 (352)
                      +..++.+|+..+       ...++++|..+++  |+.-.  +.+ .....+..++.+|+..+.   ..+..+|..+.  .
T Consensus        33 ~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~~--~~~-~~~~~~~~~~~v~v~~~~---~~l~~~d~~tG~~~   99 (238)
T PF13360_consen   33 VPDGGRVYVASG-------DGNLYALDAKTGKVLWRFDL--PGP-ISGAPVVDGGRVYVGTSD---GSLYALDAKTGKVL   99 (238)
T ss_dssp             EEETTEEEEEET-------TSEEEEEETTTSEEEEEEEC--SSC-GGSGEEEETTEEEEEETT---SEEEEEETTTSCEE
T ss_pred             EEeCCEEEEEcC-------CCEEEEEECCCCCEEEEeec--ccc-ccceeeecccccccccce---eeeEecccCCccee
Confidence            447888998843       4788999998887  65443  222 112246778999988742   47899998877  4


Q ss_pred             EE-EecCCCCcc--cceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCc--eeecCCCCCCCC--------CCcEEEEC
Q 045821          192 WK-LHTEPNIFT--EIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDS--WLHADANMASGW--------RGPAVVVD  258 (352)
Q Consensus       192 W~-~~~~~~~~~--~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~--W~~~~~~~~~~~--------~~~~~~~~  258 (352)
                      |+ .....+...  ......+.++.+|+...      ...+.++|+.+++  |+.-...+....        ....+..+
T Consensus       100 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (238)
T PF13360_consen  100 WSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISD  173 (238)
T ss_dssp             EEEEE-SSCTCSTB--SEEEEETTEEEEEET------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCT
T ss_pred             eeeccccccccccccccCceEecCEEEEEec------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEEC
Confidence            98 443322222  22234445777777642      1268999988764  776432211111        11123346


Q ss_pred             CEEEEEecCCCCeEEEEeCCCCc--eEEccCCCCCcCCCCceEEEeCCEEEEEcCCceEEEEEcCCcc
Q 045821          259 DALYVLDQSSGTKLMMWQKESRE--WSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCSAVVIDVGNIG  324 (352)
Q Consensus       259 ~~l~~~gg~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~d~~~~~  324 (352)
                      +.+|+..+..  .+..+|..++.  |+..  ...    ........++.||+......++.+|+++..
T Consensus       174 ~~v~~~~~~g--~~~~~d~~tg~~~w~~~--~~~----~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  174 GRVYVSSGDG--RVVAVDLATGEKLWSKP--ISG----IYSLPSVDGGTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             TEEEEECCTS--SEEEEETTTTEEEEEEC--SS-----ECECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred             CEEEEEcCCC--eEEEEECCCCCEEEEec--CCC----ccCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence            7788776553  36666999987  8333  211    112245668888888855567789988654

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.53  E-value=0.069  Score=48.97  Aligned_cols=221  Identities=16%  Similarity=0.175  Sum_probs=122.4

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCe
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNT  147 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~  147 (352)
                      ++.+|+.+..     -.++.||+.+....|+.-..-.      ...+.+..++.+|+.+.       ...++.+|..+++
T Consensus        65 ~~~v~v~~~~-----g~v~a~d~~tG~~~W~~~~~~~------~~~~p~v~~~~v~v~~~-------~g~l~ald~~tG~  126 (377)
T TIGR03300        65 GGKVYAADAD-----GTVVALDAETGKRLWRVDLDER------LSGGVGADGGLVFVGTE-------KGEVIALDAEDGK  126 (377)
T ss_pred             CCEEEEECCC-----CeEEEEEccCCcEeeeecCCCC------cccceEEcCCEEEEEcC-------CCEEEEEECCCCc
Confidence            7777765322     2477778722334575433221      11123444677776432       3578999998775


Q ss_pred             --eEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCC--cEEEecCCCCc--ccceeEEEECCEEEEEccCC
Q 045821          148 --WTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTN--NWKLHTEPNIF--TEIEDSFVMDGKIYIRCSAS  221 (352)
Q Consensus       148 --W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~--~W~~~~~~~~~--~~~~~~~~~~g~iyv~GG~~  221 (352)
                        |+.-..  .+ .....+..++.+|+..+.   ..+..+|+.++  .|+.-...+..  ......+..++.+|+. ...
T Consensus       127 ~~W~~~~~--~~-~~~~p~v~~~~v~v~~~~---g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~-~~~  199 (377)
T TIGR03300       127 ELWRAKLS--SE-VLSPPLVANGLVVVRTND---GRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVG-FAG  199 (377)
T ss_pred             EeeeeccC--ce-eecCCEEECCEEEEECCC---CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEE-CCC
Confidence              764322  11 223344567888886442   56899999876  48754322211  1122334567766653 222


Q ss_pred             CCCCceEEEEEeCCCC--ceeec-CCCCCC-------CCCCcEEEECCEEEEEecCCCCeEEEEeCCCCc--eEEccCCC
Q 045821          222 AATSHVCALVYEPSTD--SWLHA-DANMAS-------GWRGPAVVVDDALYVLDQSSGTKLMMWQKESRE--WSPVGRLS  289 (352)
Q Consensus       222 ~~~~~~~i~~yd~~~~--~W~~~-~~~~~~-------~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~--W~~~~~~~  289 (352)
                           ..+..+|+.++  .|+.- ..+...       ......+..++.+|+.+. .+ .++.||+++++  |+.-  .+
T Consensus       200 -----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~-~g-~l~a~d~~tG~~~W~~~--~~  270 (377)
T TIGR03300       200 -----GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY-QG-RVAALDLRSGRVLWKRD--AS  270 (377)
T ss_pred             -----CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc-CC-EEEEEECCCCcEEEeec--cC
Confidence                 25888888665  48642 111100       011223456788887653 33 79999998754  7543  11


Q ss_pred             CCcCCCCceEEEeCCEEEEEcCCceEEEEEcCCc--cccc
Q 045821          290 TLLTRPPCKLVAIGKTIFVIGKGCSAVVIDVGNI--GNIG  327 (352)
Q Consensus       290 ~~~~~~~~~~~~~~~~i~v~gG~~~~~~~d~~~~--~w~~  327 (352)
                           .....+..+++||+......++.+|....  .|+.
T Consensus       271 -----~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~  305 (377)
T TIGR03300       271 -----SYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKN  305 (377)
T ss_pred             -----CccCceEeCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence                 12234567899999876656777887543  3654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=97.49  E-value=0.004  Score=52.68  Aligned_cols=101  Identities=17%  Similarity=0.126  Sum_probs=66.4

Q ss_pred             EEEEE-eCCCCCCCCCCeEEEEECCCCe--------e---EecCCCCCcceeeeeEEE--CC--EEEEEeCCCCC-----
Q 045821          121 NAYLL-GGCGWSEDATSEVYCYDASMNT--------W---TDAAPMSTARCYFPCGVL--NQ--KIYCIGGLGDT-----  179 (352)
Q Consensus       121 ~iyv~-GG~~~~~~~~~~~~~~d~~t~~--------W---~~~~~~~~~r~~~~~~~~--~~--~iyv~gG~~~~-----  179 (352)
                      ..|++ ||.+.++.-+..+++....++.        .   ..+.+.|.+|++|++.++  .|  ...+|||...-     
T Consensus        39 ~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qR  118 (337)
T PF03089_consen   39 EQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQR  118 (337)
T ss_pred             eeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCcccc
Confidence            45665 6777766677788887665432        1   124578999999987776  23  46777885421     


Q ss_pred             ------------CceEEEeCCCCcEEE--ecCCCCcccceeEEEECCEEEEEccCC
Q 045821          180 ------------HSWDVYDPRTNNWKL--HTEPNIFTEIEDSFVMDGKIYIRCSAS  221 (352)
Q Consensus       180 ------------~~v~~yd~~t~~W~~--~~~~~~~~~~~~~~~~~g~iyv~GG~~  221 (352)
                                  ..|+..|++-+-.+.  ++.+.....+|.+..-++.+|++||..
T Consensus       119 TTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHs  174 (337)
T PF03089_consen  119 TTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHS  174 (337)
T ss_pred             chhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEE
Confidence                        556666766655442  333444556667777899999999875

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.45  E-value=0.02  Score=49.08  Aligned_cols=186  Identities=16%  Similarity=0.152  Sum_probs=104.2

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCcEEEec
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNNWKLHT  196 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~  196 (352)
                      ++.+|...      .....++++|+.+++-..+....    ..+++..  ++.+|+...    ....++|+.+++++.+.
T Consensus        11 ~g~l~~~D------~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~----~~~~~~d~~~g~~~~~~   76 (246)
T PF08450_consen   11 DGRLYWVD------IPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADS----GGIAVVDPDTGKVTVLA   76 (246)
T ss_dssp             TTEEEEEE------TTTTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEET----TCEEEEETTTTEEEEEE
T ss_pred             CCEEEEEE------cCCCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEc----CceEEEecCCCcEEEEe
Confidence            57788774      23468999999998766543222    2233333  689999887    55678899999998886


Q ss_pred             CCC-----CcccceeEEEECCEEEEEccCCCC-CCc--eEEEEEeCCCCceeecCCCCCCCCCCcEEEECC-EEEEEecC
Q 045821          197 EPN-----IFTEIEDSFVMDGKIYIRCSASAA-TSH--VCALVYEPSTDSWLHADANMASGWRGPAVVVDD-ALYVLDQS  267 (352)
Q Consensus       197 ~~~-----~~~~~~~~~~~~g~iyv~GG~~~~-~~~--~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~l~~~gg~  267 (352)
                      ..+     ..+....++.-+|+||+-.-.... ...  ..++++++. .+.+.+...... -.+.++..++ .||+....
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~-pNGi~~s~dg~~lyv~ds~  154 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGF-PNGIAFSPDGKTLYVADSF  154 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESS-EEEEEEETTSSEEEEEETT
T ss_pred             eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccc-ccceEECCcchheeecccc
Confidence            542     111222334447899986322211 111  479999998 666555332111 1122334455 46665544


Q ss_pred             CCCeEEEEeCCCCc--eEEc---cCCCCCcCCCCceEEE-eCCEEEEEc-CCceEEEEEcCC
Q 045821          268 SGTKLMMWQKESRE--WSPV---GRLSTLLTRPPCKLVA-IGKTIFVIG-KGCSAVVIDVGN  322 (352)
Q Consensus       268 ~~~~v~~yd~~~~~--W~~~---~~~~~~~~~~~~~~~~-~~~~i~v~g-G~~~~~~~d~~~  322 (352)
                      .+ .|++||+....  +...   ..++... ...-++++ -++.||+.. +...+.+||++.
T Consensus       155 ~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~-g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G  214 (246)
T PF08450_consen  155 NG-RIWRFDLDADGGELSNRRVFIDFPGGP-GYPDGLAVDSDGNLWVADWGGGRIVVFDPDG  214 (246)
T ss_dssp             TT-EEEEEEEETTTCCEEEEEEEEE-SSSS-CEEEEEEEBTTS-EEEEEETTTEEEEEETTS
T ss_pred             cc-eeEEEeccccccceeeeeeEEEcCCCC-cCCCcceEcCCCCEEEEEcCCCEEEEECCCc
Confidence            44 89999886433  4322   2233211 01123333 367888863 455788999884

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.44  E-value=0.066  Score=47.12  Aligned_cols=236  Identities=11%  Similarity=0.113  Sum_probs=106.4

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCe
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNT  147 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~  147 (352)
                      ++.-|++|-.    . .++.=+-  ...+|+....-...+......++...++..|++|-.       .-++.-.=.-.+
T Consensus        27 ~~~G~~VG~~----g-~il~T~D--GG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~-------g~ll~T~DgG~t   92 (302)
T PF14870_consen   27 PNHGWAVGAY----G-TILKTTD--GGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP-------GLLLHTTDGGKT   92 (302)
T ss_dssp             SS-EEEEETT----T-EEEEESS--TTSS-EE-----S-----EEEEEEEETTEEEEEEET-------TEEEEESSTTSS
T ss_pred             CCEEEEEecC----C-EEEEECC--CCccccccccCCCccceeeEEEEEecCCceEEEcCC-------ceEEEecCCCCC
Confidence            5667777542    1 1222222  578999886432211122233445557889988731       122222223457


Q ss_pred             eEecCC-CCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCC
Q 045821          148 WTDAAP-MSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATS  225 (352)
Q Consensus       148 W~~~~~-~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~  225 (352)
                      |+.++. .+.|...+....+ ++.+.+++..   ..+++=.-.-.+|+.+..............-+|++++++ ..+   
T Consensus        93 W~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~---G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs-~~G---  165 (302)
T PF14870_consen   93 WERVPLSSKLPGSPFGITALGDGSAELAGDR---GAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVS-SRG---  165 (302)
T ss_dssp             -EE----TT-SS-EEEEEEEETTEEEEEETT-----EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEE-TTS---
T ss_pred             cEEeecCCCCCCCeeEEEEcCCCcEEEEcCC---CcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEE-Ccc---
Confidence            999862 2344444444444 5677776653   334444444568998764333222222233467766664 221   


Q ss_pred             ceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEe--CCCCceEEccCCCCCcCCCC-ceEEE-
Q 045821          226 HVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQ--KESREWSPVGRLSTLLTRPP-CKLVA-  301 (352)
Q Consensus       226 ~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd--~~~~~W~~~~~~~~~~~~~~-~~~~~-  301 (352)
                       .-....|+....|+.......++...+...-++.|++++  .+..+..=|  -..++|.+-. .|....... ..++. 
T Consensus       166 -~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~--~Gg~~~~s~~~~~~~~w~~~~-~~~~~~~~~~ld~a~~  241 (302)
T PF14870_consen  166 -NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA--RGGQIQFSDDPDDGETWSEPI-IPIKTNGYGILDLAYR  241 (302)
T ss_dssp             -SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE--TTTEEEEEE-TTEEEEE---B--TTSS--S-EEEEEES
T ss_pred             -cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe--CCcEEEEccCCCCcccccccc-CCcccCceeeEEEEec
Confidence             234567888889998876555555555566678888876  222666666  4457787732 222111111 22222 


Q ss_pred             eCCEEEEEcCCceEEEEEcCCcccccc
Q 045821          302 IGKTIFVIGKGCSAVVIDVGNIGNIGG  328 (352)
Q Consensus       302 ~~~~i~v~gG~~~~~~~d~~~~~w~~~  328 (352)
                      .++.+++.||.-..+.-.-.-.+|++.
T Consensus       242 ~~~~~wa~gg~G~l~~S~DgGktW~~~  268 (302)
T PF14870_consen  242 PPNEIWAVGGSGTLLVSTDGGKTWQKD  268 (302)
T ss_dssp             SSS-EEEEESTT-EEEESSTTSS-EE-
T ss_pred             CCCCEEEEeCCccEEEeCCCCccceEC
Confidence            368899999987666656667789874

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=97.32  E-value=0.018  Score=50.14  Aligned_cols=105  Identities=14%  Similarity=0.278  Sum_probs=65.3

Q ss_pred             CceEEEeCCCCcEEEecCCCCcccceeEEE-ECCEEEEEccCCCCC-CceEEEEEeCCCCceeecCCCC----CCCCCCc
Q 045821          180 HSWDVYDPRTNNWKLHTEPNIFTEIEDSFV-MDGKIYIRCSASAAT-SHVCALVYEPSTDSWLHADANM----ASGWRGP  253 (352)
Q Consensus       180 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~g~iyv~GG~~~~~-~~~~i~~yd~~~~~W~~~~~~~----~~~~~~~  253 (352)
                      ..+-.||..+.+|..+..- ....-..... -++++|+.|-..-.+ ....+..||..+.+|+.++...    +.+....
T Consensus        16 ~~lC~yd~~~~qW~~~g~~-i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNG-ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCC-ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence            7788999999999987643 2222222333 377888886544434 3458899999999999886622    2221111


Q ss_pred             EEE--ECCEEEEEecCCC--CeEEEEeCCCCceEEccC
Q 045821          254 AVV--VDDALYVLDQSSG--TKLMMWQKESREWSPVGR  287 (352)
Q Consensus       254 ~~~--~~~~l~~~gg~~~--~~v~~yd~~~~~W~~~~~  287 (352)
                      .+.  ...++++.|....  ..+..||  ..+|..+..
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~d--Gs~W~~i~~  130 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYD--GSSWSSIGS  130 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEc--CCceEeccc
Confidence            111  2345666665322  4577775  778999975

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=97.22  E-value=0.018  Score=51.89  Aligned_cols=119  Identities=21%  Similarity=0.199  Sum_probs=77.6

Q ss_pred             ECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCC-------ceEEEEEeC----
Q 045821          166 LNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATS-------HVCALVYEP----  234 (352)
Q Consensus       166 ~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~-------~~~i~~yd~----  234 (352)
                      .+.+|+.++..   ....+||..|..-...|.+..+.....++.++++||++........       ...+..|+.    
T Consensus        75 ~gskIv~~d~~---~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~  151 (342)
T PF07893_consen   75 HGSKIVAVDQS---GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDD  151 (342)
T ss_pred             cCCeEEEEcCC---CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccccccc
Confidence            47888888654   4478999999988777766666666677788999999966543322       123444442    


Q ss_pred             ----CCCceeecCCCCCCCCCC-----c--EEEE-CCEEEE-EecCCCCeEEEEeCCCCceEEccCC
Q 045821          235 ----STDSWLHADANMASGWRG-----P--AVVV-DDALYV-LDQSSGTKLMMWQKESREWSPVGRL  288 (352)
Q Consensus       235 ----~~~~W~~~~~~~~~~~~~-----~--~~~~-~~~l~~-~gg~~~~~v~~yd~~~~~W~~~~~~  288 (352)
                          ..-.|+.+++++-.....     .  -+++ +..|+| +.+.. ...+.||+++.+|+.+++-
T Consensus       152 ~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-~GTysfDt~~~~W~~~GdW  217 (342)
T PF07893_consen  152 PSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-WGTYSFDTESHEWRKHGDW  217 (342)
T ss_pred             ccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc-eEEEEEEcCCcceeeccce
Confidence                233688887644322221     1  1344 567777 43321 1489999999999999853

>PRK13684 Ycf48-like protein; Provisional

Probab=97.08  E-value=0.21  Score=45.03  Aligned_cols=206  Identities=13%  Similarity=0.190  Sum_probs=102.0

Q ss_pred             CCCCeeEeccCCCcccCCcceEEEEEC-CEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEE
Q 045821           93 TRRSWKMIHELPARTLRRKGMGFEVLG-KNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIY  171 (352)
Q Consensus        93 ~~~~w~~~~~~~~~~~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iy  171 (352)
                      ...+|+++.....  .+...+.+..++ +.+++.|.       ...+++=+-.-.+|+.+.... .-..+.+....+..+
T Consensus       117 gG~tW~~~~~~~~--~~~~~~~i~~~~~~~~~~~g~-------~G~i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~  186 (334)
T PRK13684        117 GGKNWTRIPLSEK--LPGSPYLITALGPGTAEMATN-------VGAIYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKY  186 (334)
T ss_pred             CCCCCeEccCCcC--CCCCceEEEEECCCcceeeec-------cceEEEECCCCCCceeCcCCC-cceEEEEEECCCCeE
Confidence            4678988863211  111222333343 34555543       123444333456799886533 223344444444344


Q ss_pred             EEeCCCCCCceEE-EeCCCCcEEEecCCCCccccee-EEEECCEEEEEccCCCCCCceEEEEE--eCCCCceeecCCCCC
Q 045821          172 CIGGLGDTHSWDV-YDPRTNNWKLHTEPNIFTEIED-SFVMDGKIYIRCSASAATSHVCALVY--EPSTDSWLHADANMA  247 (352)
Q Consensus       172 v~gG~~~~~~v~~-yd~~t~~W~~~~~~~~~~~~~~-~~~~~g~iyv~GG~~~~~~~~~i~~y--d~~~~~W~~~~~~~~  247 (352)
                      ++.|..  ..++. .|....+|+.+... ....... +..-++.++++|...       ...+  +-...+|+.+..+..
T Consensus       187 v~~g~~--G~i~~s~~~gg~tW~~~~~~-~~~~l~~i~~~~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~~~~~  256 (334)
T PRK13684        187 VAVSSR--GNFYSTWEPGQTAWTPHQRN-SSRRLQSMGFQPDGNLWMLARGG-------QIRFNDPDDLESWSKPIIPEI  256 (334)
T ss_pred             EEEeCC--ceEEEEcCCCCCeEEEeeCC-CcccceeeeEcCCCCEEEEecCC-------EEEEccCCCCCccccccCCcc
Confidence            443322  12222 24445679988643 2233233 333478898885332       2334  233458998654322


Q ss_pred             -CCCCCcE--EEECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEE-eCCEEEEEcCCceEEEEEcC
Q 045821          248 -SGWRGPA--VVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVA-IGKTIFVIGKGCSAVVIDVG  321 (352)
Q Consensus       248 -~~~~~~~--~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~i~v~gG~~~~~~~d~~  321 (352)
                       ......+  +..++.++++|.. + .++.-.....+|+.+...+. .......++. .++++|+.|..-.+..++..
T Consensus       257 ~~~~~l~~v~~~~~~~~~~~G~~-G-~v~~S~d~G~tW~~~~~~~~-~~~~~~~~~~~~~~~~~~~G~~G~il~~~~~  331 (334)
T PRK13684        257 TNGYGYLDLAYRTPGEIWAGGGN-G-TLLVSKDGGKTWEKDPVGEE-VPSNFYKIVFLDPEKGFVLGQRGVLLRYVGS  331 (334)
T ss_pred             ccccceeeEEEcCCCCEEEEcCC-C-eEEEeCCCCCCCeECCcCCC-CCcceEEEEEeCCCceEEECCCceEEEecCC
Confidence             1122222  2336678877754 3 45555556789999863222 1223344443 46778888765444445543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=96.91  E-value=0.1  Score=44.69  Aligned_cols=190  Identities=16%  Similarity=0.155  Sum_probs=101.5

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE--CCEEEEEeCCCCCCCCCCeEEEEECCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL--GKNAYLLGGCGWSEDATSEVYCYDASM  145 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t  145 (352)
                      ++.||.+.    ...-.++.+|+  .++.-..+. .+   .   ..+++..  ++.+|+...        ....++|+.+
T Consensus        11 ~g~l~~~D----~~~~~i~~~~~--~~~~~~~~~-~~---~---~~G~~~~~~~g~l~v~~~--------~~~~~~d~~~   69 (246)
T PF08450_consen   11 DGRLYWVD----IPGGRIYRVDP--DTGEVEVID-LP---G---PNGMAFDRPDGRLYVADS--------GGIAVVDPDT   69 (246)
T ss_dssp             TTEEEEEE----TTTTEEEEEET--TTTEEEEEE-SS---S---EEEEEEECTTSEEEEEET--------TCEEEEETTT
T ss_pred             CCEEEEEE----cCCCEEEEEEC--CCCeEEEEe-cC---C---CceEEEEccCCEEEEEEc--------CceEEEecCC
Confidence            56788772    23346788898  776554433 22   1   1333443  678888764        3346669999


Q ss_pred             CeeEecCCCC--C-cceee--eeEEECCEEEEEeCCCCC------CceEEEeCCCCcEEEecCCCCcccceeEEEECC-E
Q 045821          146 NTWTDAAPMS--T-ARCYF--PCGVLNQKIYCIGGLGDT------HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDG-K  213 (352)
Q Consensus       146 ~~W~~~~~~~--~-~r~~~--~~~~~~~~iyv~gG~~~~------~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g-~  213 (352)
                      ++++.+...+  . +....  .++--+|.+|+..-....      ..++++++. .+.+.+... ......-+..-++ .
T Consensus        70 g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~~~pNGi~~s~dg~~  147 (246)
T PF08450_consen   70 GKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-LGFPNGIAFSPDGKT  147 (246)
T ss_dssp             TEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-ESSEEEEEEETTSSE
T ss_pred             CcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-cccccceEECCcchh
Confidence            9998876653  1 22333  333336888886432221      358899998 665554321 1111222233355 5


Q ss_pred             EEEEccCCCCCCceEEEEEeCCCCc--eeecC---CCCCCCCC--CcEEEECCEEEEEecCCCCeEEEEeCCCCceEEcc
Q 045821          214 IYIRCSASAATSHVCALVYEPSTDS--WLHAD---ANMASGWR--GPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVG  286 (352)
Q Consensus       214 iyv~GG~~~~~~~~~i~~yd~~~~~--W~~~~---~~~~~~~~--~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~  286 (352)
                      ||+.-.     ....|++|+.....  +....   ........  +.++-.+|.||+..- .+..|++||++...-..+.
T Consensus       148 lyv~ds-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-~~~~I~~~~p~G~~~~~i~  221 (246)
T PF08450_consen  148 LYVADS-----FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-GGGRIVVFDPDGKLLREIE  221 (246)
T ss_dssp             EEEEET-----TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-TTTEEEEEETTSCEEEEEE
T ss_pred             eeeccc-----ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-CCCEEEEECCCccEEEEEc
Confidence            777632     22368888875433  33221   11111111  122334788888643 2339999999966666564

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=96.87  E-value=0.27  Score=42.92  Aligned_cols=182  Identities=15%  Similarity=0.079  Sum_probs=87.3

Q ss_pred             EEEEEeCCCCCCCCCCeEEEEECCCCeeEe-cCCCCCcceeeeeEEE-CC-EEEEEeCCCCCCceEEEeCCCCcEEEecC
Q 045821          121 NAYLLGGCGWSEDATSEVYCYDASMNTWTD-AAPMSTARCYFPCGVL-NQ-KIYCIGGLGDTHSWDVYDPRTNNWKLHTE  197 (352)
Q Consensus       121 ~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~-~~~~~~~r~~~~~~~~-~~-~iyv~gG~~~~~~v~~yd~~t~~W~~~~~  197 (352)
                      .+|+.++.      ...+.+||+.+++-.. +.....++   .++.. ++ .+|+.++.+  ..+.+||..+.+....-.
T Consensus         2 ~~~~s~~~------d~~v~~~d~~t~~~~~~~~~~~~~~---~l~~~~dg~~l~~~~~~~--~~v~~~d~~~~~~~~~~~   70 (300)
T TIGR03866         2 KAYVSNEK------DNTISVIDTATLEVTRTFPVGQRPR---GITLSKDGKLLYVCASDS--DTIQVIDLATGEVIGTLP   70 (300)
T ss_pred             cEEEEecC------CCEEEEEECCCCceEEEEECCCCCC---ceEECCCCCEEEEEECCC--CeEEEEECCCCcEEEecc
Confidence            45555543      3468888888775322 22111122   12222 33 577776543  678899998876543211


Q ss_pred             CCCcccceeEEEECC-EEEEEccCCCCCCceEEEEEeCCCCce-eecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEE
Q 045821          198 PNIFTEIEDSFVMDG-KIYIRCSASAATSHVCALVYEPSTDSW-LHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMW  275 (352)
Q Consensus       198 ~~~~~~~~~~~~~~g-~iyv~GG~~~~~~~~~i~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~y  275 (352)
                      ..... ...++.-++ .+|+.++..     ..+..||+.+.+- ..++..  .......+..++++++++...+..+..|
T Consensus        71 ~~~~~-~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~~~~~~~  142 (300)
T TIGR03866        71 SGPDP-ELFALHPNGKILYIANEDD-----NLVTVIDIETRKVLAEIPVG--VEPEGMAVSPDGKIVVNTSETTNMAHFI  142 (300)
T ss_pred             CCCCc-cEEEECCCCCEEEEEcCCC-----CeEEEEECCCCeEEeEeeCC--CCcceEEECCCCCEEEEEecCCCeEEEE
Confidence            11111 111222244 566664322     2588888876542 222211  1112223344677777766554467778


Q ss_pred             eCCCCceEEccCCCCCcCCCCceEEEeCCE-EEEEcC-CceEEEEEcCCcc
Q 045821          276 QKESREWSPVGRLSTLLTRPPCKLVAIGKT-IFVIGK-GCSAVVIDVGNIG  324 (352)
Q Consensus       276 d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-i~v~gG-~~~~~~~d~~~~~  324 (352)
                      |..+..-...-....   +..+.....+++ +++-+. ...+.+||.++..
T Consensus       143 d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~  190 (300)
T TIGR03866       143 DTKTYEIVDNVLVDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATRK  190 (300)
T ss_pred             eCCCCeEEEEEEcCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcce
Confidence            887654322111111   111122223444 444432 2346678887654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.83  E-value=0.14  Score=43.79  Aligned_cols=156  Identities=18%  Similarity=0.081  Sum_probs=93.1

Q ss_pred             eeeeEE-ECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCc
Q 045821          160 YFPCGV-LNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDS  238 (352)
Q Consensus       160 ~~~~~~-~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~  238 (352)
                      ..+... .++.+|.-.|....+.+..||+.|++-....+++......+++.++++||.+.     -.....+.||..+  
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLT-----Wk~~~~f~yd~~t--  119 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLT-----WKEGTGFVYDPNT--  119 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEE-----SSSSEEEEEETTT--
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEE-----ecCCeEEEEcccc--
Confidence            344555 57899999887776899999999998766666777777778899999999993     1123688999975  


Q ss_pred             eeecCCCCCCCCCCcEE-EECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCc----CCCCceEEEeCCEEEE-EcCC
Q 045821          239 WLHADANMASGWRGPAV-VVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLL----TRPPCKLVAIGKTIFV-IGKG  312 (352)
Q Consensus       239 W~~~~~~~~~~~~~~~~-~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~----~~~~~~~~~~~~~i~v-~gG~  312 (352)
                      .+.+... .....+-.. ..+..|++-.|.+  .++.+||++-+  .+..+....    ....--+-..+++||. +--.
T Consensus       120 l~~~~~~-~y~~EGWGLt~dg~~Li~SDGS~--~L~~~dP~~f~--~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~t  194 (264)
T PF05096_consen  120 LKKIGTF-PYPGEGWGLTSDGKRLIMSDGSS--RLYFLDPETFK--EVRTIQVTDNGRPVSNLNELEYINGKIYANVWQT  194 (264)
T ss_dssp             TEEEEEE-E-SSS--EEEECSSCEEEE-SSS--EEEEE-TTT-S--EEEEEE-EETTEE---EEEEEEETTEEEEEETTS
T ss_pred             ceEEEEE-ecCCcceEEEcCCCEEEEECCcc--ceEEECCcccc--eEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCC
Confidence            3333321 111233344 4455677777754  89999998633  222221100    0111123345788885 5566


Q ss_pred             ceEEEEEcCCccccc
Q 045821          313 CSAVVIDVGNIGNIG  327 (352)
Q Consensus       313 ~~~~~~d~~~~~w~~  327 (352)
                      +.+..+|+++..-..
T Consensus       195 d~I~~Idp~tG~V~~  209 (264)
T PF05096_consen  195 DRIVRIDPETGKVVG  209 (264)
T ss_dssp             SEEEEEETTT-BEEE
T ss_pred             CeEEEEeCCCCeEEE
Confidence            677789999876433

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=96.83  E-value=0.45  Score=44.82  Aligned_cols=148  Identities=11%  Similarity=0.065  Sum_probs=82.3

Q ss_pred             CCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCE-
Q 045821          135 TSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGK-  213 (352)
Q Consensus       135 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~-  213 (352)
                      ...++++|..+++-+.+...+..........-+..|++....+....++.+|..+++.+++..... ........-+|+ 
T Consensus       241 ~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~-~~~~p~wSpDG~~  319 (448)
T PRK04792        241 KAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRA-IDTEPSWHPDGKS  319 (448)
T ss_pred             CcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCC-CccceEECCCCCE
Confidence            367999999988776665544221111111113356555433333679999999998887754211 111122333554 


Q ss_pred             EEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECC-EEEEEecCCC-CeEEEEeCCCCceEEccC
Q 045821          214 IYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDD-ALYVLDQSSG-TKLMMWQKESREWSPVGR  287 (352)
Q Consensus       214 iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~l~~~gg~~~-~~v~~yd~~~~~W~~~~~  287 (352)
                      |++. ...  .....++.+|..+++++.+..... ........-++ .|++.+...+ ..++++|+.++....+..
T Consensus       320 I~f~-s~~--~g~~~Iy~~dl~~g~~~~Lt~~g~-~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~  391 (448)
T PRK04792        320 LIFT-SER--GGKPQIYRVNLASGKVSRLTFEGE-QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTS  391 (448)
T ss_pred             EEEE-ECC--CCCceEEEEECCCCCEEEEecCCC-CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccC
Confidence            4443 221  122478999999888887742111 11122333344 5555543322 478999999988877653

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=96.72  E-value=0.35  Score=42.16  Aligned_cols=224  Identities=15%  Similarity=0.076  Sum_probs=102.9

Q ss_pred             EEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECC-EEEEEeCCCCCCCCCCeEEEEECCCCee
Q 045821           70 WIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGK-NAYLLGGCGWSEDATSEVYCYDASMNTW  148 (352)
Q Consensus        70 ~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~d~~t~~W  148 (352)
                      .+|+.++.+    -.+.++|+  .++.-...-....  ..+  ......++ .+|+.++.      ...+.+||..+++.
T Consensus         2 ~~~~s~~~d----~~v~~~d~--~t~~~~~~~~~~~--~~~--~l~~~~dg~~l~~~~~~------~~~v~~~d~~~~~~   65 (300)
T TIGR03866         2 KAYVSNEKD----NTISVIDT--ATLEVTRTFPVGQ--RPR--GITLSKDGKLLYVCASD------SDTIQVIDLATGEV   65 (300)
T ss_pred             cEEEEecCC----CEEEEEEC--CCCceEEEEECCC--CCC--ceEECCCCCEEEEEECC------CCeEEEEECCCCcE
Confidence            466665531    25556687  6655332222211  111  11122233 56776642      35688999988765


Q ss_pred             Ee-cCCCCCcceeeeeEEE-C-CEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCccc-ceeEEEECCEEEEEccCCCCC
Q 045821          149 TD-AAPMSTARCYFPCGVL-N-QKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTE-IEDSFVMDGKIYIRCSASAAT  224 (352)
Q Consensus       149 ~~-~~~~~~~r~~~~~~~~-~-~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~-~~~~~~~~g~iyv~GG~~~~~  224 (352)
                      .. ++....+.   ..+.. + +.+|+.++.+  ..+.+||..+.+-  +...+.... ...+..-+|++++++....  
T Consensus        66 ~~~~~~~~~~~---~~~~~~~g~~l~~~~~~~--~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~~--  136 (300)
T TIGR03866        66 IGTLPSGPDPE---LFALHPNGKILYIANEDD--NLVTVIDIETRKV--LAEIPVGVEPEGMAVSPDGKIVVNTSETT--  136 (300)
T ss_pred             EEeccCCCCcc---EEEECCCCCEEEEEcCCC--CeEEEEECCCCeE--EeEeeCCCCcceEEECCCCCEEEEEecCC--
Confidence            43 32211221   12222 3 4566665433  5789999987642  211111111 1122333677766643321  


Q ss_pred             CceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceE-Ecc----CCCCCcCCCCceE
Q 045821          225 SHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWS-PVG----RLSTLLTRPPCKL  299 (352)
Q Consensus       225 ~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~-~~~----~~~~~~~~~~~~~  299 (352)
                        ..+..||..+.+-..... .........+..+++.+++++..+..+.+||.++.+.. .+.    ..+.. ......+
T Consensus       137 --~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~i  212 (300)
T TIGR03866       137 --NMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPE-AVQPVGI  212 (300)
T ss_pred             --CeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccc-cCCccce
Confidence              235556776543322100 11111112233456555555443348999999876532 221    11110 0111122


Q ss_pred             --EEeCCEEEEE-cCCceEEEEEcCC
Q 045821          300 --VAIGKTIFVI-GKGCSAVVIDVGN  322 (352)
Q Consensus       300 --~~~~~~i~v~-gG~~~~~~~d~~~  322 (352)
                        ..-+..+|+. ++.+...++|.++
T Consensus       213 ~~s~dg~~~~~~~~~~~~i~v~d~~~  238 (300)
T TIGR03866       213 KLTKDGKTAFVALGPANRVAVVDAKT  238 (300)
T ss_pred             EECCCCCEEEEEcCCCCeEEEEECCC
Confidence              2224455664 4455677898864

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=96.61  E-value=0.058  Score=48.78  Aligned_cols=148  Identities=11%  Similarity=0.144  Sum_probs=91.6

Q ss_pred             CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCC--cccceeEEEECCE-EEEEccCCCCCCceEEEEEeCCCCceeecC
Q 045821          167 NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNI--FTEIEDSFVMDGK-IYIRCSASAATSHVCALVYEPSTDSWLHAD  243 (352)
Q Consensus       167 ~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~--~~~~~~~~~~~g~-iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~  243 (352)
                      ...+.+++|.+..-.++.-|-+++.  .+..+..  .+-..+...-+|. ..+.+|..     ..++.||..+.+-+++.
T Consensus       224 ~~plllvaG~d~~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr-----ky~ysyDle~ak~~k~~  296 (514)
T KOG2055|consen  224 TAPLLLVAGLDGTLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR-----KYLYSYDLETAKVTKLK  296 (514)
T ss_pred             CCceEEEecCCCcEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccc-----eEEEEeecccccccccc
Confidence            3568888888754555555666665  3333222  1222222223555 44454444     36899999999998886


Q ss_pred             CCCCC---CCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEcCCceEEEEEc
Q 045821          244 ANMAS---GWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCSAVVIDV  320 (352)
Q Consensus       244 ~~~~~---~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~d~  320 (352)
                      ++...   ......+..++...++.|..+ .|+..-..+++|..--.++.  ....+++...+.+|++.||.-.++++|+
T Consensus       297 ~~~g~e~~~~e~FeVShd~~fia~~G~~G-~I~lLhakT~eli~s~KieG--~v~~~~fsSdsk~l~~~~~~GeV~v~nl  373 (514)
T KOG2055|consen  297 PPYGVEEKSMERFEVSHDSNFIAIAGNNG-HIHLLHAKTKELITSFKIEG--VVSDFTFSSDSKELLASGGTGEVYVWNL  373 (514)
T ss_pred             CCCCcccchhheeEecCCCCeEEEcccCc-eEEeehhhhhhhhheeeecc--EEeeEEEecCCcEEEEEcCCceEEEEec
Confidence            54222   222334556777777777777 88888888888853322332  1233444455678999999889999999


Q ss_pred             CCcc
Q 045821          321 GNIG  324 (352)
Q Consensus       321 ~~~~  324 (352)
                      .++.
T Consensus       374 ~~~~  377 (514)
T KOG2055|consen  374 RQNS  377 (514)
T ss_pred             CCcc
Confidence            9875

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=96.58  E-value=0.19  Score=43.79  Aligned_cols=106  Identities=11%  Similarity=0.234  Sum_probs=65.1

Q ss_pred             CCCeEEEEECCCCeeEecCCCCCcceeeeeEEE-CCEEEEEeCCCC----CCceEEEeCCCCcEEEecCCC--Cccccee
Q 045821          134 ATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGD----THSWDVYDPRTNNWKLHTEPN--IFTEIED  206 (352)
Q Consensus       134 ~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~----~~~v~~yd~~t~~W~~~~~~~--~~~~~~~  206 (352)
                      .-..+..||..+.+|..+..--.... .++... ++++|+.|-...    ...+-.||..+.+|..++.-.  .-.....
T Consensus        14 ~C~~lC~yd~~~~qW~~~g~~i~G~V-~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~   92 (281)
T PF12768_consen   14 PCPGLCLYDTDNSQWSSPGNGISGTV-TDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT   92 (281)
T ss_pred             CCCEEEEEECCCCEeecCCCCceEEE-EEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence            35678899999999999875422221 233333 677888775322    167889999999998887521  1111112


Q ss_pred             EE-E---ECCEEEEEccCCCCCCceEEEEEeCCCCceeecCC
Q 045821          207 SF-V---MDGKIYIRCSASAATSHVCALVYEPSTDSWLHADA  244 (352)
Q Consensus       207 ~~-~---~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~  244 (352)
                      +. +   -.+++++.|..  ......+..||  ..+|+.+..
T Consensus        93 a~~~~~~d~~~~~~aG~~--~~g~~~l~~~d--Gs~W~~i~~  130 (281)
T PF12768_consen   93 ALTFISNDGSNFWVAGRS--ANGSTFLMKYD--GSSWSSIGS  130 (281)
T ss_pred             EEEeeccCCceEEEecee--cCCCceEEEEc--CCceEeccc
Confidence            22 2   13468887654  23344677774  458988865

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=96.57  E-value=0.12  Score=46.86  Aligned_cols=188  Identities=12%  Similarity=0.141  Sum_probs=100.4

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCe
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNT  147 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~  147 (352)
                      ..-+++++|  ..+...+|..|-  .++.  .+..+.-.-.|......+..+....+++|.      ..-++.||..+.+
T Consensus       224 ~~plllvaG--~d~~lrifqvDG--k~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r------rky~ysyDle~ak  291 (514)
T KOG2055|consen  224 TAPLLLVAG--LDGTLRIFQVDG--KVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR------RKYLYSYDLETAK  291 (514)
T ss_pred             CCceEEEec--CCCcEEEEEecC--ccCh--hheeeeeccCccceeeecCCCceEEEeccc------ceEEEEeeccccc
Confidence            345666666  345677888887  6665  333332110222333333334436666654      3457899999998


Q ss_pred             eEecCCCCC-c---ceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECC-EEEEEccCCC
Q 045821          148 WTDAAPMST-A---RCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDG-KIYIRCSASA  222 (352)
Q Consensus       148 W~~~~~~~~-~---r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g-~iyv~GG~~~  222 (352)
                      -..+.++.. +   ...|.+. .++.+.++-|..  .-+......|+.|-.--.++..... .....++ .|++.||.. 
T Consensus       292 ~~k~~~~~g~e~~~~e~FeVS-hd~~fia~~G~~--G~I~lLhakT~eli~s~KieG~v~~-~~fsSdsk~l~~~~~~G-  366 (514)
T KOG2055|consen  292 VTKLKPPYGVEEKSMERFEVS-HDSNFIAIAGNN--GHIHLLHAKTKELITSFKIEGVVSD-FTFSSDSKELLASGGTG-  366 (514)
T ss_pred             cccccCCCCcccchhheeEec-CCCCeEEEcccC--ceEEeehhhhhhhhheeeeccEEee-EEEecCCcEEEEEcCCc-
Confidence            888876531 1   1223333 344556666644  3455666677777432222222111 2223344 567775544 


Q ss_pred             CCCceEEEEEeCCCCceeecCCCCCCCCCCcEE--EECCEEEEEecCCCCeEEEEeCCC
Q 045821          223 ATSHVCALVYEPSTDSWLHADANMASGWRGPAV--VVDDALYVLDQSSGTKLMMWQKES  279 (352)
Q Consensus       223 ~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~--~~~~~l~~~gg~~~~~v~~yd~~~  279 (352)
                           .||++|..++.-...-. -....++...  ..++.++.+|...| -|-+||.++
T Consensus       367 -----eV~v~nl~~~~~~~rf~-D~G~v~gts~~~S~ng~ylA~GS~~G-iVNIYd~~s  418 (514)
T KOG2055|consen  367 -----EVYVWNLRQNSCLHRFV-DDGSVHGTSLCISLNGSYLATGSDSG-IVNIYDGNS  418 (514)
T ss_pred             -----eEEEEecCCcceEEEEe-ecCccceeeeeecCCCceEEeccCcc-eEEEeccch
Confidence                 59999998875332211 1112233332  36778777776665 677887554

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=96.57  E-value=0.37  Score=46.19  Aligned_cols=285  Identities=14%  Similarity=0.101  Sum_probs=137.3

Q ss_pred             CCCccCCCcHHHHHHhhccCccccchhhhhhhhhhcccccChhh-HHH-HhhCCCC----CCEEEEEEecCCCCceeEEE
Q 045821           14 VVPLISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEW-CAY-RRKHNLD----ETWIYAFCRDNKLERVCCYV   87 (352)
Q Consensus        14 ~~~~~~~lp~dl~~~il~r~p~~~~~~l~~v~k~W~~l~~s~~~-~~~-~~~~~~~----~~~l~~~gg~~~~~~~~~~~   87 (352)
                      ....+..||.|+...||..++.+.+..++.+|+.|+.+...... .+. +......    +..+-...+.........+.
T Consensus       104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~~~  183 (537)
T KOG0274|consen  104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWKSFYR  183 (537)
T ss_pred             ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhhhhhh
Confidence            35567889999999999999999999999999999988754432 211 1111111    11111111100000000000


Q ss_pred             -ecCCCCCCCeeEeccCCCc-ccC--CcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeee
Q 045821           88 -LDPNSTRRSWKMIHELPAR-TLR--RKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPC  163 (352)
Q Consensus        88 -~d~~~~~~~w~~~~~~~~~-~~~--~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~  163 (352)
                       ..-  ....|......... ..+  ........+.+.. +.-|     .....+.+||..+..-...+.....-.-.+.
T Consensus       184 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~-~~~~-----s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l  255 (537)
T KOG0274|consen  184 RRFR--LSKNWRKLFRRGYKVLLGTDDHVVLCLQLHDGF-FKSG-----SDDSTLHLWDLNNGYLILTRLVGHFGGVWGL  255 (537)
T ss_pred             hhhh--ccccccccccccceeecccCcchhhhheeecCe-EEec-----CCCceeEEeecccceEEEeeccCCCCCceeE
Confidence             011  23344443322100 000  0111111111111 1122     2334556777777654433211111111222


Q ss_pred             EEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE-CCEEEEEccCCCCCCceEEEEEeCCCCceee
Q 045821          164 GVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM-DGKIYIRCSASAATSHVCALVYEPSTDSWLH  241 (352)
Q Consensus       164 ~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~  241 (352)
                      ... ++.+++.|..+  ..+-+.|..++....+-  . .+.....+.. .+...+.|+.+     +.+.++|..+.+-..
T Consensus       256 ~~~~~~~~lvsgS~D--~t~rvWd~~sg~C~~~l--~-gh~stv~~~~~~~~~~~sgs~D-----~tVkVW~v~n~~~l~  325 (537)
T KOG0274|consen  256 AFPSGGDKLVSGSTD--KTERVWDCSTGECTHSL--Q-GHTSSVRCLTIDPFLLVSGSRD-----NTVKVWDVTNGACLN  325 (537)
T ss_pred             EEecCCCEEEEEecC--CcEEeEecCCCcEEEEe--c-CCCceEEEEEccCceEeeccCC-----ceEEEEeccCcceEE
Confidence            222 35666666655  67778888888776542  2 2222222333 33333333333     367788887666554


Q ss_pred             cCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCC-EEEEEcCCce-EEEEE
Q 045821          242 ADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGK-TIFVIGKGCS-AVVID  319 (352)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~i~v~gG~~~-~~~~d  319 (352)
                      +-..  +...--.+..++.+.+.|.+++ .|-+||+.+.+.  +..+.. ....-.++ .+++ ..++=|+.++ +.+.|
T Consensus       326 l~~~--h~~~V~~v~~~~~~lvsgs~d~-~v~VW~~~~~~c--l~sl~g-H~~~V~sl-~~~~~~~~~Sgs~D~~IkvWd  398 (537)
T KOG0274|consen  326 LLRG--HTGPVNCVQLDEPLLVSGSYDG-TVKVWDPRTGKC--LKSLSG-HTGRVYSL-IVDSENRLLSGSLDTTIKVWD  398 (537)
T ss_pred             Eecc--ccccEEEEEecCCEEEEEecCc-eEEEEEhhhcee--eeeecC-CcceEEEE-EecCcceEEeeeeccceEeec
Confidence            4221  1111112456788888888887 899999985444  333332 12222233 3444 4444444443 44678


Q ss_pred             cCCc
Q 045821          320 VGNI  323 (352)
Q Consensus       320 ~~~~  323 (352)
                      +++.
T Consensus       399 l~~~  402 (537)
T KOG0274|consen  399 LRTK  402 (537)
T ss_pred             CCch
Confidence            7776

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=96.53  E-value=0.42  Score=40.65  Aligned_cols=144  Identities=11%  Similarity=0.107  Sum_probs=64.5

Q ss_pred             CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE-CCEEEEEccCCCCCCceEEEEEeCCCCcee-ecCC
Q 045821          167 NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM-DGKIYIRCSASAATSHVCALVYEPSTDSWL-HADA  244 (352)
Q Consensus       167 ~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~-~~~~  244 (352)
                      ++..+++++.+  ..+.+||..++.-...-..... ........ ++++++.++..     ..+..||..+.+-. .+..
T Consensus        62 ~~~~l~~~~~~--~~i~i~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~  133 (289)
T cd00200          62 DGTYLASGSSD--KTIRLWDLETGECVRTLTGHTS-YVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKCLTTLRG  133 (289)
T ss_pred             CCCEEEEEcCC--CeEEEEEcCcccceEEEeccCC-cEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEEEEEecc
Confidence            34455555544  6788999887532211111111 11112222 34666665423     25778888744332 2221


Q ss_pred             CCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceE-EccCCCCCcCCCCceEEE-eCC-EEEEEcCCceEEEEEcC
Q 045821          245 NMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWS-PVGRLSTLLTRPPCKLVA-IGK-TIFVIGKGCSAVVIDVG  321 (352)
Q Consensus       245 ~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~-~~~-~i~v~gG~~~~~~~d~~  321 (352)
                       ............++.+++.+...+ .+.+||..+.+-. .+.. .   .....++.. .++ .+++.+....+.+||..
T Consensus       134 -~~~~i~~~~~~~~~~~l~~~~~~~-~i~i~d~~~~~~~~~~~~-~---~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~  207 (289)
T cd00200         134 -HTDWVNSVAFSPDGTFVASSSQDG-TIKLWDLRTGKCVATLTG-H---TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS  207 (289)
T ss_pred             -CCCcEEEEEEcCcCCEEEEEcCCC-cEEEEEccccccceeEec-C---ccccceEEECCCcCEEEEecCCCcEEEEECC
Confidence             111111111222345555554344 8999998754321 2211 1   111122222 233 45554444456688887


Q ss_pred             Ccc
Q 045821          322 NIG  324 (352)
Q Consensus       322 ~~~  324 (352)
                      ...
T Consensus       208 ~~~  210 (289)
T cd00200         208 TGK  210 (289)
T ss_pred             CCc
Confidence            533

>PRK13684 Ycf48-like protein; Provisional

Probab=96.53  E-value=0.57  Score=42.20  Aligned_cols=212  Identities=15%  Similarity=0.162  Sum_probs=104.1

Q ss_pred             CCCCeeEecc-CCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCC-CCcceeeeeEEE-CCE
Q 045821           93 TRRSWKMIHE-LPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPM-STARCYFPCGVL-NQK  169 (352)
Q Consensus        93 ~~~~w~~~~~-~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~-~~~r~~~~~~~~-~~~  169 (352)
                      ...+|++... ++.  ....-..+...++..|+.|..       ..++.=+=.-.+|+.+... ..+........+ ++.
T Consensus        74 gG~tW~~~~~~~~~--~~~~l~~v~~~~~~~~~~G~~-------g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~  144 (334)
T PRK13684         74 GGETWEERSLDLPE--ENFRLISISFKGDEGWIVGQP-------SLLLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGT  144 (334)
T ss_pred             CCCCceECccCCcc--cccceeeeEEcCCcEEEeCCC-------ceEEEECCCCCCCeEccCCcCCCCCceEEEEECCCc
Confidence            4678998753 221  111222333345556665421       2233311123479888532 122222333333 345


Q ss_pred             EEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE-CCEEEEEccCCCCCCceEEEE-EeCCCCceeecCCCCC
Q 045821          170 IYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM-DGKIYIRCSASAATSHVCALV-YEPSTDSWLHADANMA  247 (352)
Q Consensus       170 iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~iyv~GG~~~~~~~~~i~~-yd~~~~~W~~~~~~~~  247 (352)
                      +|+.|..   ..+++=+-.-.+|+.+...... ....+... ++.++++ |..+     .++. .|....+|+.+.....
T Consensus       145 ~~~~g~~---G~i~~S~DgG~tW~~~~~~~~g-~~~~i~~~~~g~~v~~-g~~G-----~i~~s~~~gg~tW~~~~~~~~  214 (334)
T PRK13684        145 AEMATNV---GAIYRTTDGGKNWEALVEDAAG-VVRNLRRSPDGKYVAV-SSRG-----NFYSTWEPGQTAWTPHQRNSS  214 (334)
T ss_pred             ceeeecc---ceEEEECCCCCCceeCcCCCcc-eEEEEEECCCCeEEEE-eCCc-----eEEEEcCCCCCeEEEeeCCCc
Confidence            6666643   2344444446789988653322 22233333 4444444 3332     2333 2445568998865433


Q ss_pred             CCCCCcEEEECCEEEEEecCCCCeEEEE--eCCCCceEEccCCCCC-cCCCCceEEEe-CCEEEEEcCCceEEEEEcCCc
Q 045821          248 SGWRGPAVVVDDALYVLDQSSGTKLMMW--QKESREWSPVGRLSTL-LTRPPCKLVAI-GKTIFVIGKGCSAVVIDVGNI  323 (352)
Q Consensus       248 ~~~~~~~~~~~~~l~~~gg~~~~~v~~y--d~~~~~W~~~~~~~~~-~~~~~~~~~~~-~~~i~v~gG~~~~~~~d~~~~  323 (352)
                      ......+...++.++++|.. + .+ ++  +-...+|+.+.. |.. .....+++... ++.+++.|..-.++.-...-.
T Consensus       215 ~~l~~i~~~~~g~~~~vg~~-G-~~-~~~s~d~G~sW~~~~~-~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~  290 (334)
T PRK13684        215 RRLQSMGFQPDGNLWMLARG-G-QI-RFNDPDDLESWSKPII-PEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGK  290 (334)
T ss_pred             ccceeeeEcCCCCEEEEecC-C-EE-EEccCCCCCccccccC-CccccccceeeEEEcCCCCEEEEcCCCeEEEeCCCCC
Confidence            33344444557888888754 3 33 34  344568997642 211 11222333333 667888876544444344455


Q ss_pred             cccc
Q 045821          324 GNIG  327 (352)
Q Consensus       324 ~w~~  327 (352)
                      +|..
T Consensus       291 tW~~  294 (334)
T PRK13684        291 TWEK  294 (334)
T ss_pred             CCeE
Confidence            7865

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=96.51  E-value=0.43  Score=40.57  Aligned_cols=183  Identities=10%  Similarity=0.083  Sum_probs=82.7

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeE-ecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEec
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWT-DAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHT  196 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~-~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~  196 (352)
                      ++..+++++.      ...+.+||..+++.. .+.....  .-..+... ++.+++.++.+  ..+.+||..+..-...-
T Consensus        62 ~~~~l~~~~~------~~~i~i~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~  131 (289)
T cd00200          62 DGTYLASGSS------DKTIRLWDLETGECVRTLTGHTS--YVSSVAFSPDGRILSSSSRD--KTIKVWDVETGKCLTTL  131 (289)
T ss_pred             CCCEEEEEcC------CCeEEEEEcCcccceEEEeccCC--cEEEEEEcCCCCEEEEecCC--CeEEEEECCCcEEEEEe
Confidence            3345555553      356788888775321 1211111  11112222 34566666533  67889999865432221


Q ss_pred             CCCCcccceeEEEE-CCEEEEEccCCCCCCceEEEEEeCCCCce-eecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEE
Q 045821          197 EPNIFTEIEDSFVM-DGKIYIRCSASAATSHVCALVYEPSTDSW-LHADANMASGWRGPAVVVDDALYVLDQSSGTKLMM  274 (352)
Q Consensus       197 ~~~~~~~~~~~~~~-~g~iyv~GG~~~~~~~~~i~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~  274 (352)
                      .. ........... ++.+++.|+..     ..+..||..+.+- ..+.. ...........-+++.+++++..+ .+.+
T Consensus       132 ~~-~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~-~i~i  203 (289)
T cd00200         132 RG-HTDWVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTGKCVATLTG-HTGEVNSVAFSPDGEKLLSSSSDG-TIKL  203 (289)
T ss_pred             cc-CCCcEEEEEEcCcCCEEEEEcCC-----CcEEEEEccccccceeEec-CccccceEEECCCcCEEEEecCCC-cEEE
Confidence            11 11111122223 34555553312     2477788764332 22211 111111112223444555665544 8999


Q ss_pred             EeCCCCceEEccCCCCCcCCCCceEEEe-CCEEEEEcC-CceEEEEEcCC
Q 045821          275 WQKESREWSPVGRLSTLLTRPPCKLVAI-GKTIFVIGK-GCSAVVIDVGN  322 (352)
Q Consensus       275 yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~i~v~gG-~~~~~~~d~~~  322 (352)
                      ||..+.+....  +.. ......++... ++.+++.++ ...+.+||..+
T Consensus       204 ~d~~~~~~~~~--~~~-~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~  250 (289)
T cd00200         204 WDLSTGKCLGT--LRG-HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT  250 (289)
T ss_pred             EECCCCceecc--hhh-cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence            99976443222  211 01112223332 355666665 44567888875

>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.49  E-value=0.48  Score=40.89  Aligned_cols=169  Identities=12%  Similarity=0.119  Sum_probs=95.9

Q ss_pred             eccCCCcccCCcceEEEEECCEEEEEeCCCCC----------------CCCCCeEEEEECCCCe----eEecCCCCCcce
Q 045821          100 IHELPARTLRRKGMGFEVLGKNAYLLGGCGWS----------------EDATSEVYCYDASMNT----WTDAAPMSTARC  159 (352)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~----------------~~~~~~~~~~d~~t~~----W~~~~~~~~~r~  159 (352)
                      +.+.|.. ....+-++..+++.|| |||+--.                ....+.+..||..+++    |++--.-+...+
T Consensus        28 vG~~P~S-GGDTYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~Wa  105 (339)
T PF09910_consen   28 VGPPPTS-GGDTYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWA  105 (339)
T ss_pred             ccCCCCC-CCccceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCccccc
Confidence            4444432 3455566777777777 5775211                1235678999988887    654433332222


Q ss_pred             eeeeEE----ECCEEEEEeCCCCC-CceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeC
Q 045821          160 YFPCGV----LNQKIYCIGGLGDT-HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEP  234 (352)
Q Consensus       160 ~~~~~~----~~~~iyv~gG~~~~-~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~  234 (352)
                      +-.+-.    +++++++.=+-... -.++..|..++.=+++..-|..   -.+.++|...|-+  .+.......+.+||+
T Consensus       106 GEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps~---KG~~~~D~a~F~i--~~~~~g~~~i~~~Dl  180 (339)
T PF09910_consen  106 GEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNPSL---KGTLVHDYACFGI--NNFHKGVSGIHCLDL  180 (339)
T ss_pred             cchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCCCCc---CceEeeeeEEEec--cccccCCceEEEEEc
Confidence            211111    25677776443322 6778888888887777643332   2233344444433  333344558999999


Q ss_pred             CCCce--eecCCC-------CCCCCCCcEEEECCEEEEE-ecCCCCeEEEEeCCC
Q 045821          235 STDSW--LHADAN-------MASGWRGPAVVVDDALYVL-DQSSGTKLMMWQKES  279 (352)
Q Consensus       235 ~~~~W--~~~~~~-------~~~~~~~~~~~~~~~l~~~-gg~~~~~v~~yd~~~  279 (352)
                      .+++|  ...+..       ...+..+.++...+++|.+ +|    -+.+.||..
T Consensus       181 i~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rG----Gi~vgnP~~  231 (339)
T PF09910_consen  181 ISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVRG----GIFVGNPYN  231 (339)
T ss_pred             cCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEEec----cEEEeCCCC
Confidence            99999  444321       1123334456677777755 44    588888883

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=96.46  E-value=0.95  Score=43.92  Aligned_cols=154  Identities=12%  Similarity=0.112  Sum_probs=86.9

Q ss_pred             EECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCc-EE
Q 045821          117 VLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNN-WK  193 (352)
Q Consensus       117 ~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~-W~  193 (352)
                      ..++.+.+.|+.++      .+-+||..++-....  +...-..++++.+  .++..+....+  ..|-.+|...-. ++
T Consensus       359 SpDgq~iaTG~eDg------KVKvWn~~SgfC~vT--FteHts~Vt~v~f~~~g~~llssSLD--GtVRAwDlkRYrNfR  428 (893)
T KOG0291|consen  359 SPDGQLIATGAEDG------KVKVWNTQSGFCFVT--FTEHTSGVTAVQFTARGNVLLSSSLD--GTVRAWDLKRYRNFR  428 (893)
T ss_pred             CCCCcEEEeccCCC------cEEEEeccCceEEEE--eccCCCceEEEEEEecCCEEEEeecC--CeEEeeeecccceee
Confidence            33667777776544      477788876642221  1122223333332  55666655554  567777776543 55


Q ss_pred             EecCCCCcccceeEEEEC--CEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCe
Q 045821          194 LHTEPNIFTEIEDSFVMD--GKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTK  271 (352)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~--g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~  271 (352)
                      ....|.+...  .++.+|  |.|.+.|+.+    ...|++++.++++--.+=.....+-++.++...+.+++-|..+. .
T Consensus       429 Tft~P~p~Qf--scvavD~sGelV~AG~~d----~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk-T  501 (893)
T KOG0291|consen  429 TFTSPEPIQF--SCVAVDPSGELVCAGAQD----SFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK-T  501 (893)
T ss_pred             eecCCCceee--eEEEEcCCCCEEEeeccc----eEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccc-e
Confidence            5543333222  334444  8999987554    24688888888877666443444444444555666777776665 7


Q ss_pred             EEEEeCCCCceEEccCC
Q 045821          272 LMMWQKESREWSPVGRL  288 (352)
Q Consensus       272 v~~yd~~~~~W~~~~~~  288 (352)
                      |-+||.-. +|.++..+
T Consensus       502 VRiW~if~-s~~~vEtl  517 (893)
T KOG0291|consen  502 VRIWDIFS-SSGTVETL  517 (893)
T ss_pred             EEEEEeec-cCceeeeE
Confidence            88888764 34444433

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=96.32  E-value=0.59  Score=40.05  Aligned_cols=70  Identities=20%  Similarity=0.346  Sum_probs=51.3

Q ss_pred             cCCcceEEEEEC--C--EEEEEeCCCCC-------------CCCCCeEEEEECCCCeeE--ecCCCCCcceeeeeEEECC
Q 045821          108 LRRKGMGFEVLG--K--NAYLLGGCGWS-------------EDATSEVYCYDASMNTWT--DAAPMSTARCYFPCGVLNQ  168 (352)
Q Consensus       108 ~~~~~~~~~~~~--~--~iyv~GG~~~~-------------~~~~~~~~~~d~~t~~W~--~~~~~~~~r~~~~~~~~~~  168 (352)
                      .+|++|++.++.  |  .+.+|||+.-.             ......++.+|+.-+..+  .++.+....++|.+..-++
T Consensus        86 ~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D  165 (337)
T PF03089_consen   86 EARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARND  165 (337)
T ss_pred             cccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCc
Confidence            789999988872  2  47888995321             124457788888877544  4566677788888888899


Q ss_pred             EEEEEeCCC
Q 045821          169 KIYCIGGLG  177 (352)
Q Consensus       169 ~iyv~gG~~  177 (352)
                      .+|++||..
T Consensus       166 ~VYilGGHs  174 (337)
T PF03089_consen  166 CVYILGGHS  174 (337)
T ss_pred             eEEEEccEE
Confidence            999999954

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>cd00094 HX Hemopexin-like repeats

Probab=96.29  E-value=0.5  Score=38.89  Aligned_cols=145  Identities=13%  Similarity=0.112  Sum_probs=77.9

Q ss_pred             EEEECCEEEEEeCCCCCCCCCCeEEEEECCCCe--eEecCC-CC-CcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCC
Q 045821          115 FEVLGKNAYLLGGCGWSEDATSEVYCYDASMNT--WTDAAP-MS-TARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPR  188 (352)
Q Consensus       115 ~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~-~~-~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~  188 (352)
                      +....+.+|+|-|        ..+|+++.....  -+.+.. .+ .|..--++...  ++++|++-|    +.+++|+..
T Consensus        12 ~~~~~g~~y~FkG--------~~~w~~~~~~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg----~~yw~~~~~   79 (194)
T cd00094          12 VTTLRGELYFFKG--------RYFWRLSPGKPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKG----DKYWVYTGK   79 (194)
T ss_pred             EEEeCCEEEEEeC--------CEEEEEeCCCCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECC----CEEEEEcCc
Confidence            3444689999976        466777764211  111211 11 11111122222  389999988    778999877


Q ss_pred             CCcEE---EecCCCCc---ccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCceeec-CCCCCCCC------CCc
Q 045821          189 TNNWK---LHTEPNIF---TEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTDSWLHA-DANMASGW------RGP  253 (352)
Q Consensus       189 t~~W~---~~~~~~~~---~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~-~~~~~~~~------~~~  253 (352)
                      +....   .+......   ....++...  ++++|++-|..       .++||...++...- +......+      .-+
T Consensus        80 ~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~~-------y~ry~~~~~~v~~~yP~~i~~~w~g~p~~ida  152 (194)
T cd00094          80 NLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGDK-------YWRYDEKTQKMDPGYPKLIETDFPGVPDKVDA  152 (194)
T ss_pred             ccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCCE-------EEEEeCCCccccCCCCcchhhcCCCcCCCcce
Confidence            52221   12111111   111233333  68999997654       78888765543211 11111011      122


Q ss_pred             EEEEC-CEEEEEecCCCCeEEEEeCCCCc
Q 045821          254 AVVVD-DALYVLDQSSGTKLMMWQKESRE  281 (352)
Q Consensus       254 ~~~~~-~~l~~~gg~~~~~v~~yd~~~~~  281 (352)
                      +.... +++|++.|.   ..++||..+++
T Consensus       153 a~~~~~~~~yfF~g~---~y~~~d~~~~~  178 (194)
T cd00094         153 AFRWLDGYYYFFKGD---QYWRFDPRSKE  178 (194)
T ss_pred             eEEeCCCcEEEEECC---EEEEEeCccce
Confidence            33344 899999886   89999998766

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=96.26  E-value=1.9  Score=45.26  Aligned_cols=192  Identities=14%  Similarity=0.065  Sum_probs=103.8

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCC-------C------c--ceeeeeEEE--CCEEEEEeCCCCCCc
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMS-------T------A--RCYFPCGVL--NQKIYCIGGLGDTHS  181 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~-------~------~--r~~~~~~~~--~~~iyv~gG~~~~~~  181 (352)
                      ++.||+....      ...+.++|+.++.-+.+..-.       .      .  ...+.+++-  ++.+||.....  ..
T Consensus       635 gn~LYVaDt~------n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~--~~  706 (1057)
T PLN02919        635 KNLLYVADTE------NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ--HQ  706 (1057)
T ss_pred             CCEEEEEeCC------CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC--Ce
Confidence            4678987542      245778888877655442210       0      0  011223333  57899876543  67


Q ss_pred             eEEEeCCCCcEEEecCCC----------C--cccce-eEEEE-C-CEEEEEccCCCCCCceEEEEEeCCCCceeecC--C
Q 045821          182 WDVYDPRTNNWKLHTEPN----------I--FTEIE-DSFVM-D-GKIYIRCSASAATSHVCALVYEPSTDSWLHAD--A  244 (352)
Q Consensus       182 v~~yd~~t~~W~~~~~~~----------~--~~~~~-~~~~~-~-g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~--~  244 (352)
                      +++||+.++....+..-.          .  ..... +.++. + +.||+....+     ..|.+||+.++....+.  .
T Consensus       707 I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n-----~~Irv~D~~tg~~~~~~gg~  781 (1057)
T PLN02919        707 IWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES-----SSIRALDLKTGGSRLLAGGD  781 (1057)
T ss_pred             EEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC-----CeEEEEECCCCcEEEEEecc
Confidence            899998877654432100          0  00011 12222 3 4599985332     36889998766533211  0


Q ss_pred             C-----C-----------CCCC---CCcEEEECCEEEEEecCCCCeEEEEeCCCCceEEccCCCC----------CcCCC
Q 045821          245 N-----M-----------ASGW---RGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLST----------LLTRP  295 (352)
Q Consensus       245 ~-----~-----------~~~~---~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~----------~~~~~  295 (352)
                      +     .           ....   .+.++.-+|.||+....++ .|.+||++++....+.....          .....
T Consensus       782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~-rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~  860 (1057)
T PLN02919        782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNH-KIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSE  860 (1057)
T ss_pred             cccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCC-EEEEEECCCCeEEEEeccCCcCCCCCcccccccCC
Confidence            0     0           0000   1122344678888876554 99999999988876653211          00111


Q ss_pred             CceEE-EeCCEEEEEcCCc-eEEEEEcCCcc
Q 045821          296 PCKLV-AIGKTIFVIGKGC-SAVVIDVGNIG  324 (352)
Q Consensus       296 ~~~~~-~~~~~i~v~gG~~-~~~~~d~~~~~  324 (352)
                      -.+++ ..+++|||....+ .+.++|+++..
T Consensus       861 P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        861 PAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             ceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            22333 3467899886544 56689988754

>PRK00178 tolB translocation protein TolB; Provisional

Probab=96.22  E-value=1.1  Score=42.02  Aligned_cols=182  Identities=10%  Similarity=0.040  Sum_probs=95.3

Q ss_pred             ceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECC-EEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCccee
Q 045821           82 RVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGK-NAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCY  160 (352)
Q Consensus        82 ~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~  160 (352)
                      ...++++|.  .++.-+.+...+.    .........++ +|++....+    ...+++++|..+++.+.+......-..
T Consensus       222 ~~~l~~~~l--~~g~~~~l~~~~g----~~~~~~~SpDG~~la~~~~~~----g~~~Iy~~d~~~~~~~~lt~~~~~~~~  291 (430)
T PRK00178        222 RPRIFVQNL--DTGRREQITNFEG----LNGAPAWSPDGSKLAFVLSKD----GNPEIYVMDLASRQLSRVTNHPAIDTE  291 (430)
T ss_pred             CCEEEEEEC--CCCCEEEccCCCC----CcCCeEECCCCCEEEEEEccC----CCceEEEEECCCCCeEEcccCCCCcCC
Confidence            456788888  7777666654431    11111222233 454433221    136899999999988777643221111


Q ss_pred             eeeEEEC-CEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECC-EEEEEccCCCCCCceEEEEEeCCCCc
Q 045821          161 FPCGVLN-QKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDG-KIYIRCSASAATSHVCALVYEPSTDS  238 (352)
Q Consensus       161 ~~~~~~~-~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g-~iyv~GG~~~~~~~~~i~~yd~~~~~  238 (352)
                      +. ..-+ ..|++.........++.+|..++.++++.... .........-+| .|+.. ....  ....++.+|+.++.
T Consensus       292 ~~-~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~-~~~~--~~~~l~~~dl~tg~  366 (430)
T PRK00178        292 PF-WGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMV-HRQD--GNFHVAAQDLQRGS  366 (430)
T ss_pred             eE-ECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEE-EccC--CceEEEEEECCCCC
Confidence            11 1113 35655543322367899999988888775221 111111222344 45444 3221  23468999999988


Q ss_pred             eeecCCCCCCCCCCcEEEECCEEEEEecCC-C-CeEEEEeCCCC
Q 045821          239 WLHADANMASGWRGPAVVVDDALYVLDQSS-G-TKLMMWQKESR  280 (352)
Q Consensus       239 W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~-~-~~v~~yd~~~~  280 (352)
                      .+.+....  ........-+|+.+++.... + ..++..+...+
T Consensus       367 ~~~lt~~~--~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~  408 (430)
T PRK00178        367 VRILTDTS--LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR  408 (430)
T ss_pred             EEEccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            88775421  11223444466555554322 2 35777777544

>PRK04792 tolB translocation protein TolB; Provisional

Probab=96.22  E-value=1.1  Score=42.20  Aligned_cols=183  Identities=11%  Similarity=0.036  Sum_probs=95.8

Q ss_pred             CceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEEC-CEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcce
Q 045821           81 ERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLG-KNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARC  159 (352)
Q Consensus        81 ~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~  159 (352)
                      +...++.+|.  .++.-..+...+.   ... ......+ ..|++....+    ...+++.+|..+++.+.+........
T Consensus       240 g~~~L~~~dl--~tg~~~~lt~~~g---~~~-~~~wSPDG~~La~~~~~~----g~~~Iy~~dl~tg~~~~lt~~~~~~~  309 (448)
T PRK04792        240 RKAEIFVQDI--YTQVREKVTSFPG---ING-APRFSPDGKKLALVLSKD----GQPEIYVVDIATKALTRITRHRAIDT  309 (448)
T ss_pred             CCcEEEEEEC--CCCCeEEecCCCC---CcC-CeeECCCCCEEEEEEeCC----CCeEEEEEECCCCCeEECccCCCCcc
Confidence            3456888888  7777666655441   111 1122223 4465544322    23679999999998877764321111


Q ss_pred             eeeeEEECC-EEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECC-EEEEEccCCCCCCceEEEEEeCCCC
Q 045821          160 YFPCGVLNQ-KIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDG-KIYIRCSASAATSHVCALVYEPSTD  237 (352)
Q Consensus       160 ~~~~~~~~~-~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g-~iyv~GG~~~~~~~~~i~~yd~~~~  237 (352)
                      ... ..-++ .|++.........++.+|..+++++++.... .........-+| .|+.. +..  .....++.+|+.++
T Consensus       310 ~p~-wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~~l~~~-~~~--~g~~~I~~~dl~~g  384 (448)
T PRK04792        310 EPS-WHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGRSMIMV-NRT--NGKFNIARQDLETG  384 (448)
T ss_pred             ceE-ECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC-CCCcCeeECCCCCEEEEE-Eec--CCceEEEEEECCCC
Confidence            111 11244 4555443332378899999999988875211 111112333355 44444 332  22347889999988


Q ss_pred             ceeecCCCCCCCCCCcEEEECCE-EEEEecCCC-CeEEEEeCCCC
Q 045821          238 SWLHADANMASGWRGPAVVVDDA-LYVLDQSSG-TKLMMWQKESR  280 (352)
Q Consensus       238 ~W~~~~~~~~~~~~~~~~~~~~~-l~~~gg~~~-~~v~~yd~~~~  280 (352)
                      ..+.+.... . -......-+++ |++.....+ ..++.+|.+..
T Consensus       385 ~~~~lt~~~-~-d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~  427 (448)
T PRK04792        385 AMQVLTSTR-L-DESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR  427 (448)
T ss_pred             CeEEccCCC-C-CCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            887765421 1 11223444454 444333333 35777787433

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=96.19  E-value=0.88  Score=40.79  Aligned_cols=189  Identities=7%  Similarity=0.017  Sum_probs=88.1

Q ss_pred             EEEEEeCCCCCCCCCCeEEEEECCC-CeeEecCCCCCcceeeeeEEE-C-CEEEEEeCCCCCCceEEEeCC-CCcEEEec
Q 045821          121 NAYLLGGCGWSEDATSEVYCYDASM-NTWTDAAPMSTARCYFPCGVL-N-QKIYCIGGLGDTHSWDVYDPR-TNNWKLHT  196 (352)
Q Consensus       121 ~iyv~GG~~~~~~~~~~~~~~d~~t-~~W~~~~~~~~~r~~~~~~~~-~-~~iyv~gG~~~~~~v~~yd~~-t~~W~~~~  196 (352)
                      .+|+..+.      .+.+.+||..+ ++++.+...+.......++.- + ..+|+.+...  ..+..|+.. ++.++.+.
T Consensus         3 ~~y~~~~~------~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~--~~i~~~~~~~~g~l~~~~   74 (330)
T PRK11028          3 IVYIASPE------SQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPE--FRVLSYRIADDGALTFAA   74 (330)
T ss_pred             EEEEEcCC------CCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCC--CcEEEEEECCCCceEEee
Confidence            46666432      35677788754 466665544432222222222 3 4577755422  667777775 45666554


Q ss_pred             CCCCcccceeEEEE-CC-EEEEEccCCCCCCceEEEEEeCCCC-ce-eecCCCCC-CCCCCcEEEECCEEEEEecCCCCe
Q 045821          197 EPNIFTEIEDSFVM-DG-KIYIRCSASAATSHVCALVYEPSTD-SW-LHADANMA-SGWRGPAVVVDDALYVLDQSSGTK  271 (352)
Q Consensus       197 ~~~~~~~~~~~~~~-~g-~iyv~GG~~~~~~~~~i~~yd~~~~-~W-~~~~~~~~-~~~~~~~~~~~~~l~~~gg~~~~~  271 (352)
                      ..+.....++.+.. ++ .+|+.. ..    ...+.+||..++ .- ..+..... ..-+..++.-+++.+++.....+.
T Consensus        75 ~~~~~~~p~~i~~~~~g~~l~v~~-~~----~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~  149 (330)
T PRK11028         75 ESPLPGSPTHISTDHQGRFLFSAS-YN----ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDR  149 (330)
T ss_pred             eecCCCCceEEEECCCCCEEEEEE-cC----CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCE
Confidence            33222222233333 44 566653 21    135666776532 11 11211111 111222233355444444444458


Q ss_pred             EEEEeCCCC-ceEEcc----CCCCCcCCCCceEEEeCCEEEEEcC-CceEEEEEcCC
Q 045821          272 LMMWQKESR-EWSPVG----RLSTLLTRPPCKLVAIGKTIFVIGK-GCSAVVIDVGN  322 (352)
Q Consensus       272 v~~yd~~~~-~W~~~~----~~~~~~~~~~~~~~~~~~~i~v~gG-~~~~~~~d~~~  322 (352)
                      |.+||..++ ......    ..+....-+...+..-+..+|+... ...+.+||+..
T Consensus       150 v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~  206 (330)
T PRK11028        150 IRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD  206 (330)
T ss_pred             EEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence            999998763 232110    1111111111222233456888764 55677888863

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.13  E-value=0.31  Score=41.74  Aligned_cols=115  Identities=15%  Similarity=0.193  Sum_probs=77.8

Q ss_pred             ECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceEEccCCC
Q 045821          210 MDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLS  289 (352)
Q Consensus       210 ~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~  289 (352)
                      .+|.+|...|..+   .+.+..||+.+++-......+...+.-..+..+++||.+-=.++ ..++||+++  .+.+...+
T Consensus        54 ~~g~LyESTG~yG---~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~-~~f~yd~~t--l~~~~~~~  127 (264)
T PF05096_consen   54 DDGTLYESTGLYG---QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEG-TGFVYDPNT--LKKIGTFP  127 (264)
T ss_dssp             ETTEEEEEECSTT---EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSS-EEEEEETTT--TEEEEEEE
T ss_pred             CCCEEEEeCCCCC---cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCC-eEEEEcccc--ceEEEEEe
Confidence            5789999877654   35788999999886654443444444445678999999975444 899999975  66666555


Q ss_pred             CCcCCCCceEEEeCCEEEEEcCCceEEEEEcCCcccccceEEe
Q 045821          290 TLLTRPPCKLVAIGKTIFVIGKGCSAVVIDVGNIGNIGGIMVS  332 (352)
Q Consensus       290 ~~~~~~~~~~~~~~~~i~v~gG~~~~~~~d~~~~~w~~~~~~~  332 (352)
                      .  ..-+-+++..++.+++--|+...+..|++...-.+...++
T Consensus       128 y--~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~  168 (264)
T PF05096_consen  128 Y--PGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT  168 (264)
T ss_dssp             ---SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E
T ss_pred             c--CCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEE
Confidence            4  2456678877888888889999999999987755544443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=96.06  E-value=1  Score=40.36  Aligned_cols=191  Identities=12%  Similarity=0.098  Sum_probs=85.6

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECC-CCeeEecCCCCCcceeeeeEEE-CC-EEEEEeCCCCCCceEEEeCCCCc--EE
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDAS-MNTWTDAAPMSTARCYFPCGVL-NQ-KIYCIGGLGDTHSWDVYDPRTNN--WK  193 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~-t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~gG~~~~~~v~~yd~~t~~--W~  193 (352)
                      +..+|+.+.      ....+..|+.. ++++..+...+.+.....++.. ++ .+|+..-.+  ..+.+||..++.  .+
T Consensus        46 ~~~lyv~~~------~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~--~~v~v~~~~~~g~~~~  117 (330)
T PRK11028         46 KRHLYVGVR------PEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNA--NCVSVSPLDKDGIPVA  117 (330)
T ss_pred             CCEEEEEEC------CCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCC--CeEEEEEECCCCCCCC
Confidence            345676543      12556667765 4556554433322111222222 34 566654322  677788876431  11


Q ss_pred             EecCCCCcccceeEEEE-CC-EEEEEccCCCCCCceEEEEEeCCCC-ceeec-----CCCCCCCCCCcEEEECC-EEEEE
Q 045821          194 LHTEPNIFTEIEDSFVM-DG-KIYIRCSASAATSHVCALVYEPSTD-SWLHA-----DANMASGWRGPAVVVDD-ALYVL  264 (352)
Q Consensus       194 ~~~~~~~~~~~~~~~~~-~g-~iyv~GG~~~~~~~~~i~~yd~~~~-~W~~~-----~~~~~~~~~~~~~~~~~-~l~~~  264 (352)
                      .+...+.....+.++.. ++ .+|+..-     ....+..||..++ .....     ..+....-++.++.-++ .+|+.
T Consensus       118 ~~~~~~~~~~~~~~~~~p~g~~l~v~~~-----~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~  192 (330)
T PRK11028        118 PIQIIEGLEGCHSANIDPDNRTLWVPCL-----KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCV  192 (330)
T ss_pred             ceeeccCCCcccEeEeCCCCCEEEEeeC-----CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEE
Confidence            22211111111222222 34 6777632     2236888887653 22211     00111111112233344 56666


Q ss_pred             ecCCCCeEEEEeCC--CCceEEc---cCCCCCc--CCCCceEE--EeCCEEEEEcC-CceEEEEEcCCc
Q 045821          265 DQSSGTKLMMWQKE--SREWSPV---GRLSTLL--TRPPCKLV--AIGKTIFVIGK-GCSAVVIDVGNI  323 (352)
Q Consensus       265 gg~~~~~v~~yd~~--~~~W~~~---~~~~~~~--~~~~~~~~--~~~~~i~v~gG-~~~~~~~d~~~~  323 (352)
                      .... +.+.+||.+  +++.+.+   ..+|...  .+....+.  .-+..+|+... .....+|+++.+
T Consensus       193 ~~~~-~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~  260 (330)
T PRK11028        193 NELN-SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED  260 (330)
T ss_pred             ecCC-CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence            5433 388888776  4454433   3333321  12222222  33446888653 445667887654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=96.01  E-value=1.4  Score=41.37  Aligned_cols=180  Identities=12%  Similarity=0.007  Sum_probs=93.4

Q ss_pred             CCeEEEEECCCCeeEecCCCCCcceeeeeEEECC-EEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCE
Q 045821          135 TSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQ-KIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGK  213 (352)
Q Consensus       135 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~  213 (352)
                      ...++++|..+++-..+...+...... ...-++ +|++....+....++++|..++.-+++..-.. ........-+|+
T Consensus       227 ~~~l~~~dl~~g~~~~l~~~~g~~~~~-~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~-~~~~~~~spDG~  304 (433)
T PRK04922        227 RSAIYVQDLATGQRELVASFRGINGAP-SFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFG-IDTEPTWAPDGK  304 (433)
T ss_pred             CcEEEEEECCCCCEEEeccCCCCccCc-eECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCC-CccceEECCCCC
Confidence            467899999988877776544211111 111134 56554333323689999999888766643211 111122333555


Q ss_pred             EEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEEC-CEEEEEecCCC-CeEEEEeCCCCceEEccCCCCC
Q 045821          214 IYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVD-DALYVLDQSSG-TKLMMWQKESREWSPVGRLSTL  291 (352)
Q Consensus       214 iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~l~~~gg~~~-~~v~~yd~~~~~W~~~~~~~~~  291 (352)
                      -.++....  .....++.+|..+++.+.+.... .........-+ ..|++..+..+ ..++++|+.++....+..-+. 
T Consensus       305 ~l~f~sd~--~g~~~iy~~dl~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~-  380 (433)
T PRK04922        305 SIYFTSDR--GGRPQIYRVAASGGSAERLTFQG-NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSL-  380 (433)
T ss_pred             EEEEEECC--CCCceEEEEECCCCCeEEeecCC-CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCC-
Confidence            33332222  11236888898888887764211 11112233334 45665544332 479999999888877653221 


Q ss_pred             cCCCCceEEEeCCEEEEE---cCCceEEEEEcCC
Q 045821          292 LTRPPCKLVAIGKTIFVI---GKGCSAVVIDVGN  322 (352)
Q Consensus       292 ~~~~~~~~~~~~~~i~v~---gG~~~~~~~d~~~  322 (352)
                        .........+..|+..   +|....+++|...
T Consensus       381 --~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        381 --DESPSFAPNGSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             --CCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence              1122333333344433   2344566677753

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=95.99  E-value=0.44  Score=43.59  Aligned_cols=177  Identities=15%  Similarity=0.119  Sum_probs=91.5

Q ss_pred             CCeEEEEECCCCeeEe-cCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCc-EEEecCCCCcccceeEEEECC
Q 045821          135 TSEVYCYDASMNTWTD-AAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNN-WKLHTEPNIFTEIEDSFVMDG  212 (352)
Q Consensus       135 ~~~~~~~d~~t~~W~~-~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~-W~~~~~~~~~~~~~~~~~~~g  212 (352)
                      +..+..|+..+..-.. +..+.. -.+......||++..+|+..  .-|.+||..+.. -+.+..-..+.........++
T Consensus        47 S~rvqly~~~~~~~~k~~srFk~-~v~s~~fR~DG~LlaaGD~s--G~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~  123 (487)
T KOG0310|consen   47 SVRVQLYSSVTRSVRKTFSRFKD-VVYSVDFRSDGRLLAAGDES--GHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDN  123 (487)
T ss_pred             ccEEEEEecchhhhhhhHHhhcc-ceeEEEeecCCeEEEccCCc--CcEEEeccccHHHHHHHhhccCceeEEEecccCC
Confidence            3567778776653221 221111 11222223379999999876  578889955521 111111111111112334688


Q ss_pred             EEEEEccCCCCCCceEEEEEeCCCCcee-ecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCC
Q 045821          213 KIYIRCSASAATSHVCALVYEPSTDSWL-HADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTL  291 (352)
Q Consensus       213 ~iyv~GG~~~~~~~~~i~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~  291 (352)
                      .+++.|+-+.     .+..+|.++..-+ ++......-+++.....++.|++.||+++ .|-.||..+.+ ..+-.+...
T Consensus       124 t~l~s~sDd~-----v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg-~vrl~DtR~~~-~~v~elnhg  196 (487)
T KOG0310|consen  124 TMLVSGSDDK-----VVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDG-KVRLWDTRSLT-SRVVELNHG  196 (487)
T ss_pred             eEEEecCCCc-----eEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCc-eEEEEEeccCC-ceeEEecCC
Confidence            9999975442     3444555555422 22222222233344456888999999998 99999999874 333333221


Q ss_pred             cCCCCceEEE-eCCEEEEEcCCceEEEEEcCCc
Q 045821          292 LTRPPCKLVA-IGKTIFVIGKGCSAVVIDVGNI  323 (352)
Q Consensus       292 ~~~~~~~~~~-~~~~i~v~gG~~~~~~~d~~~~  323 (352)
                        ..--.++. .++.+.+..|.+.+-++|.-+.
T Consensus       197 --~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G  227 (487)
T KOG0310|consen  197 --CPVESVLALPSGSLIASAGGNSVKVWDLTTG  227 (487)
T ss_pred             --CceeeEEEcCCCCEEEEcCCCeEEEEEecCC
Confidence              11112233 3445555444446667776643

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=95.99  E-value=1.2  Score=40.40  Aligned_cols=238  Identities=14%  Similarity=0.202  Sum_probs=117.9

Q ss_pred             CCEEEEEEecC-CCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE---CCEEEEEeCCCCCCCCCCeEEEEEC
Q 045821           68 ETWIYAFCRDN-KLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL---GKNAYLLGGCGWSEDATSEVYCYDA  143 (352)
Q Consensus        68 ~~~l~~~gg~~-~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~  143 (352)
                      ++.||+..... .......|..++  .+++.+.+...+.   .-..-+...+   +..+|+.--      ....+.+|+.
T Consensus        48 ~~~LY~~~e~~~~~g~v~~~~i~~--~~g~L~~~~~~~~---~g~~p~~i~~~~~g~~l~vany------~~g~v~v~~l  116 (345)
T PF10282_consen   48 GRRLYVVNEGSGDSGGVSSYRIDP--DTGTLTLLNSVPS---GGSSPCHIAVDPDGRFLYVANY------GGGSVSVFPL  116 (345)
T ss_dssp             SSEEEEEETTSSTTTEEEEEEEET--TTTEEEEEEEEEE---SSSCEEEEEECTTSSEEEEEET------TTTEEEEEEE
T ss_pred             CCEEEEEEccccCCCCEEEEEECC--CcceeEEeeeecc---CCCCcEEEEEecCCCEEEEEEc------cCCeEEEEEc
Confidence            78899886543 445667777777  7678877766541   1112222333   445666531      1356777777


Q ss_pred             CCC-eeEecC---------CC---CCcceeeeeEEE-C-CEEEEEeCCCCCCceEEEeCCCCc--EEEecC--CCCcccc
Q 045821          144 SMN-TWTDAA---------PM---STARCYFPCGVL-N-QKIYCIGGLGDTHSWDVYDPRTNN--WKLHTE--PNIFTEI  204 (352)
Q Consensus       144 ~t~-~W~~~~---------~~---~~~r~~~~~~~~-~-~~iyv~gG~~~~~~v~~yd~~t~~--W~~~~~--~~~~~~~  204 (352)
                      ..+ +-....         +-   ...-..|.+... + ..+|+..= .. ..+.+|+...+.  ......  .+....-
T Consensus       117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl-G~-D~v~~~~~~~~~~~l~~~~~~~~~~G~GP  194 (345)
T PF10282_consen  117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL-GA-DRVYVYDIDDDTGKLTPVDSIKVPPGSGP  194 (345)
T ss_dssp             CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-TT-TEEEEEEE-TTS-TEEEEEEEECSTTSSE
T ss_pred             cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec-CC-CEEEEEEEeCCCceEEEeeccccccCCCC
Confidence            653 222211         00   111223444444 3 46777531 11 678888887665  544221  2222222


Q ss_pred             eeEEEE-C-CEEEEEccCCCCCCceEEEEEeCCCCceeecCC--CCCCCC----CCcEEE--ECC-EEEEEecCCCCeEE
Q 045821          205 EDSFVM-D-GKIYIRCSASAATSHVCALVYEPSTDSWLHADA--NMASGW----RGPAVV--VDD-ALYVLDQSSGTKLM  273 (352)
Q Consensus       205 ~~~~~~-~-g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~--~~~~~~----~~~~~~--~~~-~l~~~gg~~~~~v~  273 (352)
                      .++++. + ..+|++...   .....++.++..+..++.+..  ..+...    ..+.+.  -++ .||+.... .+.|.
T Consensus       195 Rh~~f~pdg~~~Yv~~e~---s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-~~sI~  270 (345)
T PF10282_consen  195 RHLAFSPDGKYAYVVNEL---SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-SNSIS  270 (345)
T ss_dssp             EEEEE-TTSSEEEEEETT---TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-TTEEE
T ss_pred             cEEEEcCCcCEEEEecCC---CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-CCEEE
Confidence            244444 3 478998532   222345556655777765532  111111    122232  245 45655433 34888


Q ss_pred             EEeC--CCCceEEccCCCCC-cCCCCceEEEeCCEEEEEc-CCceEEEEEcCC
Q 045821          274 MWQK--ESREWSPVGRLSTL-LTRPPCKLVAIGKTIFVIG-KGCSAVVIDVGN  322 (352)
Q Consensus       274 ~yd~--~~~~W~~~~~~~~~-~~~~~~~~~~~~~~i~v~g-G~~~~~~~d~~~  322 (352)
                      +|+.  .+++.+.+...+.. ..-+.+.+..-++.||+.+ +.+.+.+|++..
T Consensus       271 vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  271 VFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             EEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence            8876  45677766644431 1112233333566777776 344566787653

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=95.91  E-value=1.5  Score=41.01  Aligned_cols=146  Identities=8%  Similarity=0.016  Sum_probs=81.4

Q ss_pred             CCeEEEEECCCCeeEecCCCCCcceeeeeEEE-CC-EEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECC
Q 045821          135 TSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQ-KIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDG  212 (352)
Q Consensus       135 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g  212 (352)
                      ...++++|..+++-+.+...+..-.  ..... ++ +|++....+....++++|..++..+++..... ........-+|
T Consensus       222 ~~~l~~~~l~~g~~~~l~~~~g~~~--~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~-~~~~~~~spDg  298 (430)
T PRK00178        222 RPRIFVQNLDTGRREQITNFEGLNG--APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPA-IDTEPFWGKDG  298 (430)
T ss_pred             CCEEEEEECCCCCEEEccCCCCCcC--CeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCC-CcCCeEECCCC
Confidence            3579999999988777765432111  11111 33 45544332222689999999998887754221 11111223354


Q ss_pred             -EEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEE-CCEEEEEecCCC-CeEEEEeCCCCceEEccC
Q 045821          213 -KIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVV-DDALYVLDQSSG-TKLMMWQKESREWSPVGR  287 (352)
Q Consensus       213 -~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~l~~~gg~~~-~~v~~yd~~~~~W~~~~~  287 (352)
                       +|+.. ...  .....++.+|..+++++.+.... .........- ++.|++.....+ ..++++|..++..+.+..
T Consensus       299 ~~i~f~-s~~--~g~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~  372 (430)
T PRK00178        299 RTLYFT-SDR--GGKPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD  372 (430)
T ss_pred             CEEEEE-ECC--CCCceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC
Confidence             45544 221  12236888999888887764311 1111122233 445555543322 468999999988887764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=95.88  E-value=1.6  Score=40.99  Aligned_cols=188  Identities=13%  Similarity=0.065  Sum_probs=97.5

Q ss_pred             ceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECC-EEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCccee
Q 045821           82 RVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGK-NAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCY  160 (352)
Q Consensus        82 ~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~  160 (352)
                      ...++.+|.  .++....+...+.   ... ......++ .|++....+    ...+++.+|..+++.+.+...+.....
T Consensus       225 ~~~i~~~dl--~~g~~~~l~~~~g---~~~-~~~~SPDG~~la~~~~~~----g~~~Iy~~d~~~~~~~~Lt~~~~~~~~  294 (435)
T PRK05137        225 RPRVYLLDL--ETGQRELVGNFPG---MTF-APRFSPDGRKVVMSLSQG----GNTDIYTMDLRSGTTTRLTDSPAIDTS  294 (435)
T ss_pred             CCEEEEEEC--CCCcEEEeecCCC---ccc-CcEECCCCCEEEEEEecC----CCceEEEEECCCCceEEccCCCCccCc
Confidence            356788888  8877777665442   111 11222344 454443322    246799999998887777543321111


Q ss_pred             eeeEEECC-EEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECC-EEEEEccCCCCCCceEEEEEeCCCCc
Q 045821          161 FPCGVLNQ-KIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDG-KIYIRCSASAATSHVCALVYEPSTDS  238 (352)
Q Consensus       161 ~~~~~~~~-~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g-~iyv~GG~~~~~~~~~i~~yd~~~~~  238 (352)
                      . ...-++ .|+..........++++|..+...+++.... .........-+| .|++. ...  .....++.+|+.+..
T Consensus       295 ~-~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~-~~~~~~~~SpdG~~ia~~-~~~--~~~~~i~~~d~~~~~  369 (435)
T PRK05137        295 P-SYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGG-GRYSTPVWSPRGDLIAFT-KQG--GGQFSIGVMKPDGSG  369 (435)
T ss_pred             e-eEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCC-CcccCeEECCCCCEEEEE-EcC--CCceEEEEEECCCCc
Confidence            1 111244 4444332222267899998888777765321 111112233355 44443 222  123468888987766


Q ss_pred             eeecCCCCCCCCCCcEEEECCE-EEEEecCCC----CeEEEEeCCCCceEEcc
Q 045821          239 WLHADANMASGWRGPAVVVDDA-LYVLDQSSG----TKLMMWQKESREWSPVG  286 (352)
Q Consensus       239 W~~~~~~~~~~~~~~~~~~~~~-l~~~gg~~~----~~v~~yd~~~~~W~~~~  286 (352)
                      ...+....  ........-+|+ |++.....+    ..++.+|..+..-..+.
T Consensus       370 ~~~lt~~~--~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~  420 (435)
T PRK05137        370 ERILTSGF--LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP  420 (435)
T ss_pred             eEeccCCC--CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence            66554321  222334444554 444433222    37899998876655554

>smart00284 OLF Olfactomedin-like domains

Probab=95.86  E-value=1  Score=38.56  Aligned_cols=193  Identities=13%  Similarity=0.131  Sum_probs=105.7

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEEC----CCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEE
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDA----SMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKL  194 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~----~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~  194 (352)
                      ++++|++.+...   ....+..|.-    ..++....-.+|.+-.+-+.++++|.+|.--...  ..+..||..+++-..
T Consensus        34 ~~~~wv~~~~~~---~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~~s--~~iiKydL~t~~v~~  108 (255)
T smart00284       34 KSLYWYMPLNTR---VLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKFNS--HDICRFDLTTETYQK  108 (255)
T ss_pred             CceEEEEccccC---CCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEecCC--ccEEEEECCCCcEEE
Confidence            467787765421   1234445532    2333322223566666777888899999865433  789999999997643


Q ss_pred             ecCCCCcccc------------eeEEEECCEEEEEccCCCCCCceEEEEEeCCC----CceeecCCCCCCCCCCcEEEEC
Q 045821          195 HTEPNIFTEI------------EDSFVMDGKIYIRCSASAATSHVCALVYEPST----DSWLHADANMASGWRGPAVVVD  258 (352)
Q Consensus       195 ~~~~~~~~~~------------~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~----~~W~~~~~~~~~~~~~~~~~~~  258 (352)
                      ...+|.+...            --.++-++-|+++=..........+-..|+.+    .+|..   ..+.+..+.++++-
T Consensus       109 ~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T---~~~k~sa~naFmvC  185 (255)
T smart00284      109 EPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWIT---TYNKRSASNAFMIC  185 (255)
T ss_pred             EEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEc---CCCcccccccEEEe
Confidence            3333332111            11233445566653333323334566777765    34654   23444455567777


Q ss_pred             CEEEEEecCC--CCe-EEEEeCCCCceEEccCCCCCcCCCCceEEE---eCCEEEEEcCCceEEEEEcC
Q 045821          259 DALYVLDQSS--GTK-LMMWQKESREWSPVGRLSTLLTRPPCKLVA---IGKTIFVIGKGCSAVVIDVG  321 (352)
Q Consensus       259 ~~l~~~gg~~--~~~-v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~---~~~~i~v~gG~~~~~~~d~~  321 (352)
                      |.||++....  ... .+.||+.+++=.. ..+|-.......+++.   -+.+||+.--. ....||+.
T Consensus       186 GvLY~~~s~~~~~~~I~yayDt~t~~~~~-~~i~f~n~y~~~s~l~YNP~d~~LY~wdng-~~l~Y~v~  252 (255)
T smart00284      186 GILYVTRSLGSKGEKVFYAYDTNTGKEGH-LDIPFENMYEYISMLDYNPNDRKLYAWNNG-HLVHYDIA  252 (255)
T ss_pred             eEEEEEccCCCCCcEEEEEEECCCCccce-eeeeeccccccceeceeCCCCCeEEEEeCC-eEEEEEEE
Confidence            9999996422  234 4899999876332 2233221222333333   36789988643 35556653

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=95.84  E-value=1.4  Score=39.97  Aligned_cols=234  Identities=15%  Similarity=0.194  Sum_probs=116.0

Q ss_pred             EEecC--CCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEE--ECCCCeeE
Q 045821           74 FCRDN--KLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCY--DASMNTWT  149 (352)
Q Consensus        74 ~gg~~--~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~--d~~t~~W~  149 (352)
                      +|+..  ..+....+.||.  .++++..+...... ......+...-++.||+.....   .....+..|  +..+++.+
T Consensus         4 vgsy~~~~~~gI~~~~~d~--~~g~l~~~~~~~~~-~~Ps~l~~~~~~~~LY~~~e~~---~~~g~v~~~~i~~~~g~L~   77 (345)
T PF10282_consen    4 VGSYTNGKGGGIYVFRFDE--ETGTLTLVQTVAEG-ENPSWLAVSPDGRRLYVVNEGS---GDSGGVSSYRIDPDTGTLT   77 (345)
T ss_dssp             EEECCSSSSTEEEEEEEET--TTTEEEEEEEEEES-SSECCEEE-TTSSEEEEEETTS---STTTEEEEEEEETTTTEEE
T ss_pred             EEcCCCCCCCcEEEEEEcC--CCCCceEeeeecCC-CCCceEEEEeCCCEEEEEEccc---cCCCCEEEEEECCCcceeE
Confidence            45443  234567788888  99999877753311 1112222222356788886432   123445444  45556777


Q ss_pred             ecCCCCC-cceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCC-cEEEec----------CC-CCcccceeEEEE--C-
Q 045821          150 DAAPMST-ARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTN-NWKLHT----------EP-NIFTEIEDSFVM--D-  211 (352)
Q Consensus       150 ~~~~~~~-~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~-~W~~~~----------~~-~~~~~~~~~~~~--~-  211 (352)
                      .+...+. +...+.++.-  +..+|+.- +.. ..+.+|+...+ .=....          .+ .......+.+.+  + 
T Consensus        78 ~~~~~~~~g~~p~~i~~~~~g~~l~van-y~~-g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg  155 (345)
T PF10282_consen   78 LLNSVPSGGSSPCHIAVDPDGRFLYVAN-YGG-GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG  155 (345)
T ss_dssp             EEEEEEESSSCEEEEEECTTSSEEEEEE-TTT-TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS
T ss_pred             EeeeeccCCCCcEEEEEecCCCEEEEEE-ccC-CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC
Confidence            7766553 2222222222  34566653 221 67888888764 211111          00 111222233333  3 


Q ss_pred             CEEEEEccCCCCCCceEEEEEeCCCCc--eeecCCCCCCCCCC---cEEEE-CCEEEEEecCCCCeEEEEeCC--CCceE
Q 045821          212 GKIYIRCSASAATSHVCALVYEPSTDS--WLHADANMASGWRG---PAVVV-DDALYVLDQSSGTKLMMWQKE--SREWS  283 (352)
Q Consensus       212 g~iyv~GG~~~~~~~~~i~~yd~~~~~--W~~~~~~~~~~~~~---~~~~~-~~~l~~~gg~~~~~v~~yd~~--~~~W~  283 (352)
                      ..+|+..     .....|+.|+...+.  .............+   .++.- +..+|++....+ .|.+|+..  +..++
T Consensus       156 ~~v~v~d-----lG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~-~v~v~~~~~~~g~~~  229 (345)
T PF10282_consen  156 RFVYVPD-----LGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSN-TVSVFDYDPSDGSLT  229 (345)
T ss_dssp             SEEEEEE-----TTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTT-EEEEEEEETTTTEEE
T ss_pred             CEEEEEe-----cCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCC-cEEEEeecccCCcee
Confidence            3577763     122367777776554  54422111111111   12222 346888877655 77666555  66776


Q ss_pred             Ecc---CCCCCcCC--CCceEEEe--CCEEEEEc-CCceEEEEEcC
Q 045821          284 PVG---RLSTLLTR--PPCKLVAI--GKTIFVIG-KGCSAVVIDVG  321 (352)
Q Consensus       284 ~~~---~~~~~~~~--~~~~~~~~--~~~i~v~g-G~~~~~~~d~~  321 (352)
                      .+.   .+|.....  ....+..-  +..||+-. |.+.+.+|++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  230 EIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             EEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             EEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence            654   44432211  22333333  55688865 56667789984

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=95.78  E-value=1.6  Score=40.43  Aligned_cols=182  Identities=10%  Similarity=-0.007  Sum_probs=93.1

Q ss_pred             ceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECC-EEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCccee
Q 045821           82 RVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGK-NAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCY  160 (352)
Q Consensus        82 ~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~  160 (352)
                      ...++++|.  .++....+.....   .... .....++ .+++.....    ...+++.+|..++..+.+.........
T Consensus       213 ~~~i~v~d~--~~g~~~~~~~~~~---~~~~-~~~spDg~~l~~~~~~~----~~~~i~~~d~~~~~~~~l~~~~~~~~~  282 (417)
T TIGR02800       213 KPEIYVQDL--ATGQREKVASFPG---MNGA-PAFSPDGSKLAVSLSKD----GNPDIYVMDLDGKQLTRLTNGPGIDTE  282 (417)
T ss_pred             CcEEEEEEC--CCCCEEEeecCCC---Cccc-eEECCCCCEEEEEECCC----CCccEEEEECCCCCEEECCCCCCCCCC
Confidence            356788888  7776665554431   1111 1222244 465543322    236789999998877776543321111


Q ss_pred             eeeEEECC-EEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCce
Q 045821          161 FPCGVLNQ-KIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSW  239 (352)
Q Consensus       161 ~~~~~~~~-~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W  239 (352)
                      .. ..-++ +|++.........++.+|..+..++++.... .........-+|+.+++.....  ....++.+|+.+..+
T Consensus       283 ~~-~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~-~~~~~~~~spdg~~i~~~~~~~--~~~~i~~~d~~~~~~  358 (417)
T TIGR02800       283 PS-WSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRG-GYNASPSWSPDGDLIAFVHREG--GGFNIAVMDLDGGGE  358 (417)
T ss_pred             EE-ECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-CCccCeEECCCCCEEEEEEccC--CceEEEEEeCCCCCe
Confidence            11 11144 4554443322267899999988887765221 1111122333566555544332  234789999988777


Q ss_pred             eecCCCCCCCCCCcEEEECCE-EEEEecCCC-CeEEEEeCCC
Q 045821          240 LHADANMASGWRGPAVVVDDA-LYVLDQSSG-TKLMMWQKES  279 (352)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~-l~~~gg~~~-~~v~~yd~~~  279 (352)
                      +.+....  .........+++ |++.....+ ..+++++.+.
T Consensus       359 ~~l~~~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g  398 (417)
T TIGR02800       359 RVLTDTG--LDESPSFAPNGRMILYATTRGGRGVLGLVSTDG  398 (417)
T ss_pred             EEccCCC--CCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence            7665321  112233444444 444433322 3456666544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=95.73  E-value=1.1  Score=38.30  Aligned_cols=218  Identities=12%  Similarity=0.046  Sum_probs=120.5

Q ss_pred             EEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCC-CCCcceeeeeE
Q 045821           86 YVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAP-MSTARCYFPCG  164 (352)
Q Consensus        86 ~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~-~~~~r~~~~~~  164 (352)
                      =.+||  .+++-...+--.   ..+.+..+.--++..++..+       ...+-++|+.+..-++.+- ...+-.....+
T Consensus        86 GhLdP--~tGev~~ypLg~---Ga~Phgiv~gpdg~~Witd~-------~~aI~R~dpkt~evt~f~lp~~~a~~nlet~  153 (353)
T COG4257          86 GHLDP--ATGEVETYPLGS---GASPHGIVVGPDGSAWITDT-------GLAIGRLDPKTLEVTRFPLPLEHADANLETA  153 (353)
T ss_pred             eecCC--CCCceEEEecCC---CCCCceEEECCCCCeeEecC-------cceeEEecCcccceEEeecccccCCCcccce
Confidence            35688  888887776433   12222222222455665532       2367889998887766642 12233445556


Q ss_pred             EEC--CEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeec
Q 045821          165 VLN--QKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHA  242 (352)
Q Consensus       165 ~~~--~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~  242 (352)
                      ++|  |.++..|-...   --+.||.++.-+..+.+....-+..++.-+|.+|+.- .    .-+.|-..|+.+..=+.+
T Consensus       154 vfD~~G~lWFt~q~G~---yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyas-l----agnaiaridp~~~~aev~  225 (353)
T COG4257         154 VFDPWGNLWFTGQIGA---YGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYAS-L----AGNAIARIDPFAGHAEVV  225 (353)
T ss_pred             eeCCCccEEEeecccc---ceecCcccCceeeeccCCCCCCcceEECCCCcEEEEe-c----cccceEEcccccCCccee
Confidence            664  56666654221   1267888776665554433333444566688888872 1    123577788887765555


Q ss_pred             CCCCC--CCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEE-cCCceEEEEE
Q 045821          243 DANMA--SGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVI-GKGCSAVVID  319 (352)
Q Consensus       243 ~~~~~--~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~-gG~~~~~~~d  319 (352)
                      +.+-.  .........-.+.+.+..-.. ..+++|||.+.+|.+-+ ||....+...-.+--.+.+++- -+.....-||
T Consensus       226 p~P~~~~~gsRriwsdpig~~wittwg~-g~l~rfdPs~~sW~eyp-LPgs~arpys~rVD~~grVW~sea~agai~rfd  303 (353)
T COG4257         226 PQPNALKAGSRRIWSDPIGRAWITTWGT-GSLHRFDPSVTSWIEYP-LPGSKARPYSMRVDRHGRVWLSEADAGAIGRFD  303 (353)
T ss_pred             cCCCcccccccccccCccCcEEEeccCC-ceeeEeCcccccceeee-CCCCCCCcceeeeccCCcEEeeccccCceeecC
Confidence            44222  111122233456777663222 38999999999999876 4443334444344445666652 2232333477


Q ss_pred             cCCccc
Q 045821          320 VGNIGN  325 (352)
Q Consensus       320 ~~~~~w  325 (352)
                      +++.+.
T Consensus       304 peta~f  309 (353)
T COG4257         304 PETARF  309 (353)
T ss_pred             cccceE
Confidence            776554

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=95.73  E-value=1.3  Score=40.70  Aligned_cols=223  Identities=13%  Similarity=0.090  Sum_probs=107.6

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCC-eeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRS-WKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMN  146 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~  146 (352)
                      ++.|++.|+.  .+.  ..+||.  .+.. ...+...+   .+-+.--....++.+++.|+-+      ..+..+|..+.
T Consensus        79 DG~LlaaGD~--sG~--V~vfD~--k~r~iLR~~~ah~---apv~~~~f~~~d~t~l~s~sDd------~v~k~~d~s~a  143 (487)
T KOG0310|consen   79 DGRLLAAGDE--SGH--VKVFDM--KSRVILRQLYAHQ---APVHVTKFSPQDNTMLVSGSDD------KVVKYWDLSTA  143 (487)
T ss_pred             CCeEEEccCC--cCc--EEEecc--ccHHHHHHHhhcc---CceeEEEecccCCeEEEecCCC------ceEEEEEcCCc
Confidence            7888888753  333  344565  4421 11121111   1222222344578888887622      23344555555


Q ss_pred             eeE-ecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE-CCEEEEEccCCCCC
Q 045821          147 TWT-DAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM-DGKIYIRCSASAAT  224 (352)
Q Consensus       147 ~W~-~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~iyv~GG~~~~~  224 (352)
                      .-. .+..-...-...+....++.|.+.|||+  ..+-.||..+.+ ..+-.+.....-..++.+ .|.+.+..|++   
T Consensus       144 ~v~~~l~~htDYVR~g~~~~~~~hivvtGsYD--g~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgGn---  217 (487)
T KOG0310|consen  144 YVQAELSGHTDYVRCGDISPANDHIVVTGSYD--GKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGGN---  217 (487)
T ss_pred             EEEEEecCCcceeEeeccccCCCeEEEecCCC--ceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCCC---
Confidence            421 1111111111223333478899999998  678889988774 223223322222233444 33555554444   


Q ss_pred             CceEEEEEeCCCCceeecCCCCCCCCCCcE--EEECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEe
Q 045821          225 SHVCALVYEPSTDSWLHADANMASGWRGPA--VVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAI  302 (352)
Q Consensus       225 ~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~--~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~  302 (352)
                         .+-++|..++.=. +.....+...-..  ..-++.=++-||.++ .+-+||  +..|..+-.+..+-+-- ...+..
T Consensus       218 ---~vkVWDl~~G~ql-l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~-~VKVfd--~t~~Kvv~s~~~~~pvL-siavs~  289 (487)
T KOG0310|consen  218 ---SVKVWDLTTGGQL-LTSMFNHNKTVTCLRLASDSTRLLSGSLDR-HVKVFD--TTNYKVVHSWKYPGPVL-SIAVSP  289 (487)
T ss_pred             ---eEEEEEecCCcee-hhhhhcccceEEEEEeecCCceEeeccccc-ceEEEE--ccceEEEEeeeccccee-eEEecC
Confidence               3667776533211 1111111100001  112445566677766 899999  44566665432211111 122234


Q ss_pred             CCEEEEEcCCceEEEEE
Q 045821          303 GKTIFVIGKGCSAVVID  319 (352)
Q Consensus       303 ~~~i~v~gG~~~~~~~d  319 (352)
                      ++.-.++|..+....+.
T Consensus       290 dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  290 DDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             CCceEEEecccceeeee
Confidence            77888888877666554

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=95.70  E-value=1.8  Score=40.23  Aligned_cols=146  Identities=13%  Similarity=0.029  Sum_probs=79.5

Q ss_pred             CeEEEEECCCCeeEecCCCCCcceeeeeEEECC-EEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCE-
Q 045821          136 SEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQ-KIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGK-  213 (352)
Q Consensus       136 ~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~-  213 (352)
                      ..++++|..+++-..+........... ..-++ .+++.........++.+|..++..+.+....... ......-+|+ 
T Consensus       214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~-~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~-~~~~~s~dg~~  291 (417)
T TIGR02800       214 PEIYVQDLATGQREKVASFPGMNGAPA-FSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGID-TEPSWSPDGKS  291 (417)
T ss_pred             cEEEEEECCCCCEEEeecCCCCccceE-ECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCC-CCEEECCCCCE
Confidence            678999999887666554332222111 11244 5665544333367999999988877765322111 1112223554 


Q ss_pred             EEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCC--CeEEEEeCCCCceEEccC
Q 045821          214 IYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSG--TKLMMWQKESREWSPVGR  287 (352)
Q Consensus       214 iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~--~~v~~yd~~~~~W~~~~~  287 (352)
                      |+.. ...  .....++.+|..+..+..+.... .........-+++.+++....+  ..++.+|+.++.+..+..
T Consensus       292 l~~~-s~~--~g~~~iy~~d~~~~~~~~l~~~~-~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~  363 (417)
T TIGR02800       292 IAFT-SDR--GGSPQIYMMDADGGEVRRLTFRG-GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD  363 (417)
T ss_pred             EEEE-ECC--CCCceEEEEECCCCCEEEeecCC-CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC
Confidence            4443 222  11236888999888887664321 1111223334555444443322  479999999877776653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.62  E-value=0.83  Score=40.88  Aligned_cols=133  Identities=13%  Similarity=0.169  Sum_probs=81.6

Q ss_pred             CeEEEEECCCC-----eeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCc-EEEecCCCCcccceeEEE
Q 045821          136 SEVYCYDASMN-----TWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNN-WKLHTEPNIFTEIEDSFV  209 (352)
Q Consensus       136 ~~~~~~d~~t~-----~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~-W~~~~~~~~~~~~~~~~~  209 (352)
                      ..+.+|+....     +.+.+.....+-.-.+.+.+++++.+..|    +.+.+|+...+. +.+.+............+
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g----~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~  137 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG----NKLYVYDLDNSKTLLKKAFYDSPFYITSLSV  137 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET----TEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec----CEEEEEEccCcccchhhheecceEEEEEEec
Confidence            67889998884     56666544444445677778999888777    789999999888 887775444444445667


Q ss_pred             ECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEE-CCEEEEEecCCCCeE--EEEeC
Q 045821          210 MDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVV-DDALYVLDQSSGTKL--MMWQK  277 (352)
Q Consensus       210 ~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~l~~~gg~~~~~v--~~yd~  277 (352)
                      .++.|++..-.    ....+..|+....+-..+.......+..++..+ ++..++.+...+ .+  ..|++
T Consensus       138 ~~~~I~vgD~~----~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~g-nl~~l~~~~  203 (321)
T PF03178_consen  138 FKNYILVGDAM----KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDG-NLFVLRYNP  203 (321)
T ss_dssp             ETTEEEEEESS----SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTS-EEEEEEE-S
T ss_pred             cccEEEEEEcc----cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCC-eEEEEEECC
Confidence            78877764222    223566788867777777654444443344444 555444444444 54  45554

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.62  E-value=1.4  Score=42.32  Aligned_cols=115  Identities=12%  Similarity=0.193  Sum_probs=68.4

Q ss_pred             eeeEEECCEEEEEeCCCCCCceEEEeCCCC--cEEEecCCCCcc--------cceeEEEECCEEEEEccCCCCCCceEEE
Q 045821          161 FPCGVLNQKIYCIGGLGDTHSWDVYDPRTN--NWKLHTEPNIFT--------EIEDSFVMDGKIYIRCSASAATSHVCAL  230 (352)
Q Consensus       161 ~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~--~W~~~~~~~~~~--------~~~~~~~~~g~iyv~GG~~~~~~~~~i~  230 (352)
                      ...++.++.||+....   ..++.+|..|.  .|+.-...+...        .....++.+++||+.. ..     ..+.
T Consensus        63 stPvv~~g~vyv~s~~---g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t-~d-----g~l~  133 (527)
T TIGR03075        63 SQPLVVDGVMYVTTSY---SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT-LD-----ARLV  133 (527)
T ss_pred             cCCEEECCEEEEECCC---CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-CC-----CEEE
Confidence            3456679999996653   46899999876  487643222111        1123456788888753 22     2589


Q ss_pred             EEeCCCCc--eeecCCCCCC--CCCCcEEEECCEEEEEec-----CCCCeEEEEeCCCCc--eEEc
Q 045821          231 VYEPSTDS--WLHADANMAS--GWRGPAVVVDDALYVLDQ-----SSGTKLMMWQKESRE--WSPV  285 (352)
Q Consensus       231 ~yd~~~~~--W~~~~~~~~~--~~~~~~~~~~~~l~~~gg-----~~~~~v~~yd~~~~~--W~~~  285 (352)
                      ++|..+++  |+.-......  ....+.++.++.+|+-..     .. ..|..||.++++  |+.-
T Consensus       134 ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~-G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       134 ALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVR-GYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             EEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCC-cEEEEEECCCCceeEecc
Confidence            99987764  8754221211  122233567888776532     12 379999998865  7533

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.51  E-value=2.4  Score=40.46  Aligned_cols=116  Identities=15%  Similarity=0.203  Sum_probs=65.7

Q ss_pred             EEEECCEEEEEeCCCCCCCCCCeEEEEECCCCe--eEecCCCC----Ccc-eeeeeEEEC-CEEEEEeCCCCCCceEEEe
Q 045821          115 FEVLGKNAYLLGGCGWSEDATSEVYCYDASMNT--WTDAAPMS----TAR-CYFPCGVLN-QKIYCIGGLGDTHSWDVYD  186 (352)
Q Consensus       115 ~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~~----~~r-~~~~~~~~~-~~iyv~gG~~~~~~v~~yd  186 (352)
                      -++.++.+|+...       ...++.+|..+++  |+.-...+    .+. .....+..+ ++||+....   ..+..+|
T Consensus        57 Pvv~~g~vy~~~~-------~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~---g~v~AlD  126 (488)
T cd00216          57 PLVVDGDMYFTTS-------HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFD---GRLVALD  126 (488)
T ss_pred             CEEECCEEEEeCC-------CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCC---CeEEEEE
Confidence            3566899998643       2568899998775  87543222    111 111234446 888875432   5789999


Q ss_pred             CCCC--cEEEecCCCC-cc--cceeEEEECCEEEEEccCCCC----CCceEEEEEeCCCC--ceee
Q 045821          187 PRTN--NWKLHTEPNI-FT--EIEDSFVMDGKIYIRCSASAA----TSHVCALVYEPSTD--SWLH  241 (352)
Q Consensus       187 ~~t~--~W~~~~~~~~-~~--~~~~~~~~~g~iyv~GG~~~~----~~~~~i~~yd~~~~--~W~~  241 (352)
                      ..|.  .|+.-..... ..  .....++.++.+|+- .....    .....++++|..++  .|+.
T Consensus       127 ~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg-~~~~~~~~~~~~g~v~alD~~TG~~~W~~  191 (488)
T cd00216         127 AETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIG-SSGAEFFACGVRGALRAYDVETGKLLWRF  191 (488)
T ss_pred             CCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEe-ccccccccCCCCcEEEEEECCCCceeeEe
Confidence            9876  4876432221 01  122335566776653 22111    11236889998765  4875

The alignment model contains an 8-bladed beta-propeller.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=95.49  E-value=2.2  Score=39.97  Aligned_cols=187  Identities=15%  Similarity=0.059  Sum_probs=96.1

Q ss_pred             ceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECC-EEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCccee
Q 045821           82 RVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGK-NAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCY  160 (352)
Q Consensus        82 ~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~  160 (352)
                      ...++.+|.  .++.-..+...+.    .........++ +|++....+    ...+++++|..+++.+.+.........
T Consensus       227 ~~~l~~~dl--~~g~~~~l~~~~g----~~~~~~~SpDG~~l~~~~s~~----g~~~Iy~~d~~~g~~~~lt~~~~~~~~  296 (433)
T PRK04922        227 RSAIYVQDL--ATGQRELVASFRG----INGAPSFSPDGRRLALTLSRD----GNPEIYVMDLGSRQLTRLTNHFGIDTE  296 (433)
T ss_pred             CcEEEEEEC--CCCCEEEeccCCC----CccCceECCCCCEEEEEEeCC----CCceEEEEECCCCCeEECccCCCCccc
Confidence            456778888  7777666655442    11111222234 455443222    236799999998887666543211111


Q ss_pred             eeeEEECC-EEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECC-EEEEEccCCCCCCceEEEEEeCCCCc
Q 045821          161 FPCGVLNQ-KIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDG-KIYIRCSASAATSHVCALVYEPSTDS  238 (352)
Q Consensus       161 ~~~~~~~~-~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g-~iyv~GG~~~~~~~~~i~~yd~~~~~  238 (352)
                      .+ ..-++ .|+..........++.+|..++..+++.... .........-+| .|++..+ .  .....++.+|+.++.
T Consensus       297 ~~-~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~~~-~--~~~~~I~v~d~~~g~  371 (433)
T PRK04922        297 PT-WAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG-NYNARASVSPDGKKIAMVHG-S--GGQYRIAVMDLSTGS  371 (433)
T ss_pred             eE-ECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCC-CCccCEEECCCCCEEEEEEC-C--CCceeEEEEECCCCC
Confidence            11 11144 4544433222257888999888887775211 111112233355 4544422 2  222378899998888


Q ss_pred             eeecCCCCCCCCCCcEEEECCEEEEEec-CCC-CeEEEEeCCCCceEEc
Q 045821          239 WLHADANMASGWRGPAVVVDDALYVLDQ-SSG-TKLMMWQKESREWSPV  285 (352)
Q Consensus       239 W~~~~~~~~~~~~~~~~~~~~~l~~~gg-~~~-~~v~~yd~~~~~W~~~  285 (352)
                      .+.+....  .........+++.+++.. ..+ ..++.+|.+...=..+
T Consensus       372 ~~~Lt~~~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l  418 (433)
T PRK04922        372 VRTLTPGS--LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRL  418 (433)
T ss_pred             eEECCCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEc
Confidence            88775421  112234444555444433 222 4688888865443334

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=95.47  E-value=1.5  Score=37.70  Aligned_cols=191  Identities=16%  Similarity=0.149  Sum_probs=106.7

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECC-----CCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEE
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDAS-----MNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWK  193 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~-----t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~  193 (352)
                      .+++|++.+..+.     .+..|.-.     .++....-.+|.+-.+-+-++++|.+|.--...  ..+..||+.++.-.
T Consensus        30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~~s--~~IvkydL~t~~v~  102 (250)
T PF02191_consen   30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKYNS--RNIVKYDLTTRSVV  102 (250)
T ss_pred             CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEecCC--ceEEEEECcCCcEE
Confidence            4567888774332     44444322     222222223455555666777888887765422  78999999998644


Q ss_pred             EecCCCCcccc------------eeEEEECCEEEEEccCCCCCCceEEEEEeCCC----CceeecCCCCCCCCCCcEEEE
Q 045821          194 LHTEPNIFTEI------------EDSFVMDGKIYIRCSASAATSHVCALVYEPST----DSWLHADANMASGWRGPAVVV  257 (352)
Q Consensus       194 ~~~~~~~~~~~------------~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~----~~W~~~~~~~~~~~~~~~~~~  257 (352)
                      .-..+|.+...            --.++-++-|+|+-..........+-..|+.+    .+|..   ....+..+.++++
T Consensus       103 ~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T---~~~k~~~~naFmv  179 (250)
T PF02191_consen  103 ARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNT---SYPKRSAGNAFMV  179 (250)
T ss_pred             EEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEe---ccCchhhcceeeE
Confidence            11112222211            11234455677764444333334666777754    45653   2344555566777


Q ss_pred             CCEEEEEecCCC--CeE-EEEeCCCCceEEccCCCCCcCCCCceEEE---eCCEEEEEcCCceEEEEEcC
Q 045821          258 DDALYVLDQSSG--TKL-MMWQKESREWSPVGRLSTLLTRPPCKLVA---IGKTIFVIGKGCSAVVIDVG  321 (352)
Q Consensus       258 ~~~l~~~gg~~~--~~v-~~yd~~~~~W~~~~~~~~~~~~~~~~~~~---~~~~i~v~gG~~~~~~~d~~  321 (352)
                      -|.||++.....  ..| +.||..+++=..+. ++-........++.   .+.+||+.-.. ..+.|++.
T Consensus       180 CGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~-i~f~~~~~~~~~l~YNP~dk~LY~wd~G-~~v~Y~v~  247 (250)
T PF02191_consen  180 CGVLYATDSYDTRDTEIFYAFDTYTGKEEDVS-IPFPNPYGNISMLSYNPRDKKLYAWDNG-YQVTYDVR  247 (250)
T ss_pred             eeEEEEEEECCCCCcEEEEEEECCCCceecee-eeeccccCceEeeeECCCCCeEEEEECC-eEEEEEEE
Confidence            899999987653  234 89999987765443 32211222333443   36789998644 35556653

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=95.40  E-value=1.5  Score=37.55  Aligned_cols=184  Identities=13%  Similarity=0.112  Sum_probs=99.5

Q ss_pred             eEEEecCCCCCCCeeEeccCCCcccCCcceEEEEEC--CEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcce-e
Q 045821           84 CCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLG--KNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARC-Y  160 (352)
Q Consensus        84 ~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~-~  160 (352)
                      .+-.+|+  ++...++.+-...  ....+.-.++++  +.++..|-....       =..||.++.-+..+.. .... +
T Consensus       125 aI~R~dp--kt~evt~f~lp~~--~a~~nlet~vfD~~G~lWFt~q~G~y-------GrLdPa~~~i~vfpaP-qG~gpy  192 (353)
T COG4257         125 AIGRLDP--KTLEVTRFPLPLE--HADANLETAVFDPWGNLWFTGQIGAY-------GRLDPARNVISVFPAP-QGGGPY  192 (353)
T ss_pred             eeEEecC--cccceEEeecccc--cCCCcccceeeCCCccEEEeeccccc-------eecCcccCceeeeccC-CCCCCc
Confidence            3445666  6666655542211  233344445553  456666532111       1567777765554432 2222 2


Q ss_pred             eeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccce--eEEEECCEEEEEccCCCCCCceEEEEEeCCCCc
Q 045821          161 FPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIE--DSFVMDGKIYIRCSASAATSHVCALVYEPSTDS  238 (352)
Q Consensus       161 ~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~--~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~  238 (352)
                      -.++.-+|.+|+..=..  +-+-..|+.+..=+.++.+.......  ..+--.|++++..     ...-.+.+||+++.+
T Consensus       193 Gi~atpdGsvwyaslag--naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~witt-----wg~g~l~rfdPs~~s  265 (353)
T COG4257         193 GICATPDGSVWYASLAG--NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITT-----WGTGSLHRFDPSVTS  265 (353)
T ss_pred             ceEECCCCcEEEEeccc--cceEEcccccCCcceecCCCcccccccccccCccCcEEEec-----cCCceeeEeCccccc
Confidence            22333478888762111  66778888887655565433312111  1233357777762     112268999999999


Q ss_pred             eeecCCCCCCCCCCcE-EEECCEEEEEecCCCCeEEEEeCCCCceEEccC
Q 045821          239 WLHADANMASGWRGPA-VVVDDALYVLDQSSGTKLMMWQKESREWSPVGR  287 (352)
Q Consensus       239 W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~  287 (352)
                      |.+-+-+-...+-... |-..+++++-. ...+.+.+||+++.+++.++.
T Consensus       266 W~eypLPgs~arpys~rVD~~grVW~se-a~agai~rfdpeta~ftv~p~  314 (353)
T COG4257         266 WIEYPLPGSKARPYSMRVDRHGRVWLSE-ADAGAIGRFDPETARFTVLPI  314 (353)
T ss_pred             ceeeeCCCCCCCcceeeeccCCcEEeec-cccCceeecCcccceEEEecC
Confidence            9987543222222222 33345555533 222389999999999998863

>cd00094 HX Hemopexin-like repeats

Probab=95.31  E-value=1.3  Score=36.34  Aligned_cols=145  Identities=12%  Similarity=0.116  Sum_probs=78.3

Q ss_pred             eeEEECCEEEEEeCCCCCCceEEEeCCCC--cEEEecC-CCC-cccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCC
Q 045821          162 PCGVLNQKIYCIGGLGDTHSWDVYDPRTN--NWKLHTE-PNI-FTEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPS  235 (352)
Q Consensus       162 ~~~~~~~~iyv~gG~~~~~~v~~yd~~t~--~W~~~~~-~~~-~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~  235 (352)
                      +++..++++|++-|    ..+++++....  .-+.|.. .+. +..-.++...  +|++|++-|..       .|+|+..
T Consensus        11 A~~~~~g~~y~FkG----~~~w~~~~~~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg~~-------yw~~~~~   79 (194)
T cd00094          11 AVTTLRGELYFFKG----RYFWRLSPGKPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKGDK-------YWVYTGK   79 (194)
T ss_pred             eEEEeCCEEEEEeC----CEEEEEeCCCCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECCCE-------EEEEcCc
Confidence            34445689999988    67888876522  1222222 111 1122233333  38999995543       7888866


Q ss_pred             CCcee---ecCC-CCCC--CCCCcEEEE--CCEEEEEecCCCCeEEEEeCCCCceEE-----c----cCCCCCcCCCCce
Q 045821          236 TDSWL---HADA-NMAS--GWRGPAVVV--DDALYVLDQSSGTKLMMWQKESREWSP-----V----GRLSTLLTRPPCK  298 (352)
Q Consensus       236 ~~~W~---~~~~-~~~~--~~~~~~~~~--~~~l~~~gg~~~~~v~~yd~~~~~W~~-----~----~~~~~~~~~~~~~  298 (352)
                      +..+.   .+.. ..+.  ..--++...  ++++|++.|.   ..++||...++...     +    ..+|.   .-.++
T Consensus        80 ~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~---~y~ry~~~~~~v~~~yP~~i~~~w~g~p~---~idaa  153 (194)
T cd00094          80 NLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD---KYWRYDEKTQKMDPGYPKLIETDFPGVPD---KVDAA  153 (194)
T ss_pred             ccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC---EEEEEeCCCccccCCCCcchhhcCCCcCC---Cccee
Confidence            42221   1111 0010  111123333  6899999886   89999987655421     1    11221   12233


Q ss_pred             EEEeCCEEEEEcCCceEEEEEcCCcc
Q 045821          299 LVAIGKTIFVIGKGCSAVVIDVGNIG  324 (352)
Q Consensus       299 ~~~~~~~i~v~gG~~~~~~~d~~~~~  324 (352)
                      +...++++|+|-|. ..+.||..+.+
T Consensus       154 ~~~~~~~~yfF~g~-~y~~~d~~~~~  178 (194)
T cd00094         154 FRWLDGYYYFFKGD-QYWRFDPRSKE  178 (194)
T ss_pred             EEeCCCcEEEEECC-EEEEEeCccce
Confidence            33344899999876 56678887654

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=95.22  E-value=0.69  Score=35.18  Aligned_cols=79  Identities=13%  Similarity=0.187  Sum_probs=54.3

Q ss_pred             EEECCEEEEEeCCCC--CCceEEEeCCCCcEEEecCC---CCcccceeEEEECCEEEEEccCCCCC-CceEEEEE-eCCC
Q 045821          164 GVLNQKIYCIGGLGD--THSWDVYDPRTNNWKLHTEP---NIFTEIEDSFVMDGKIYIRCSASAAT-SHVCALVY-EPST  236 (352)
Q Consensus       164 ~~~~~~iyv~gG~~~--~~~v~~yd~~t~~W~~~~~~---~~~~~~~~~~~~~g~iyv~GG~~~~~-~~~~i~~y-d~~~  236 (352)
                      +.+||-+|.......  ...+..||..+++|+.+..|   .........+.++|+|-++.-..... ....+|+. |..+
T Consensus         2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k   81 (129)
T PF08268_consen    2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK   81 (129)
T ss_pred             EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence            457888888876522  28889999999999998754   12233345678899998884333222 23578877 4567


Q ss_pred             Cceeec
Q 045821          237 DSWLHA  242 (352)
Q Consensus       237 ~~W~~~  242 (352)
                      .+|.+.
T Consensus        82 ~~Wsk~   87 (129)
T PF08268_consen   82 QEWSKK   87 (129)
T ss_pred             ceEEEE
Confidence            789866

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=95.20  E-value=0.42  Score=36.36  Aligned_cols=79  Identities=10%  Similarity=0.181  Sum_probs=53.6

Q ss_pred             EEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCC--CCCCC-CCcEEEECCEEEEEecCCC-----CeEEEE-eCC
Q 045821          208 FVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADAN--MASGW-RGPAVVVDDALYVLDQSSG-----TKLMMW-QKE  278 (352)
Q Consensus       208 ~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~--~~~~~-~~~~~~~~~~l~~~gg~~~-----~~v~~y-d~~  278 (352)
                      ..+||.+|.+.-. .......|.+||..+++|+.+..|  ..... ....+..+|+|.++.-...     -++|+. |.+
T Consensus         2 icinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~   80 (129)
T PF08268_consen    2 ICINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE   80 (129)
T ss_pred             EEECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence            3578999888544 334455899999999999998764  22222 2234678999998865432     256666 666


Q ss_pred             CCceEEccC
Q 045821          279 SREWSPVGR  287 (352)
Q Consensus       279 ~~~W~~~~~  287 (352)
                      .++|++...
T Consensus        81 k~~Wsk~~~   89 (129)
T PF08268_consen   81 KQEWSKKHI   89 (129)
T ss_pred             cceEEEEEE
Confidence            789997753

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=95.09  E-value=2.9  Score=38.99  Aligned_cols=177  Identities=11%  Similarity=0.036  Sum_probs=96.8

Q ss_pred             CeEEEEECCCCeeEecCCCCCcceeeeeEEECC-EEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECC-E
Q 045821          136 SEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQ-KIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDG-K  213 (352)
Q Consensus       136 ~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g-~  213 (352)
                      .++|++|..+++=+.+...+....... ..-|+ ++.+........+++.+|..++.++++...+. ........-+| +
T Consensus       213 ~~Iyv~dl~tg~~~~lt~~~g~~~~~~-~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~-~d~~p~~SPDG~~  290 (419)
T PRK04043        213 PTLYKYNLYTGKKEKIASSQGMLVVSD-VSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPG-IDVNGNFVEDDKR  290 (419)
T ss_pred             CEEEEEECCCCcEEEEecCCCcEEeeE-ECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCC-ccCccEECCCCCE
Confidence            478888888887666654322111111 12244 55554433333789999999999998864432 11112233345 5


Q ss_pred             EEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECC-EEEEEecCC------C-CeEEEEeCCCCceEEc
Q 045821          214 IYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDD-ALYVLDQSS------G-TKLMMWQKESREWSPV  285 (352)
Q Consensus       214 iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~l~~~gg~~------~-~~v~~yd~~~~~W~~~  285 (352)
                      ||..-..   .....++.+|..+++.+++.....  . .....-+| .|.+.....      + .+++++|.+++.++.+
T Consensus       291 I~F~Sdr---~g~~~Iy~~dl~~g~~~rlt~~g~--~-~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~L  364 (419)
T PRK04043        291 IVFVSDR---LGYPNIFMKKLNSGSVEQVVFHGK--N-NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRL  364 (419)
T ss_pred             EEEEECC---CCCceEEEEECCCCCeEeCccCCC--c-CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEEC
Confidence            6655322   223479999999888877643211  1 22333344 454444322      2 4799999999999888


Q ss_pred             cCCCCCcCCCCceEEEeCCEEEEEc---CCceEEEEEcCCc
Q 045821          286 GRLSTLLTRPPCKLVAIGKTIFVIG---KGCSAVVIDVGNI  323 (352)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~i~v~g---G~~~~~~~d~~~~  323 (352)
                      .....   .........+..|+...   |.....++++..+
T Consensus       365 T~~~~---~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        365 TANGV---NQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             CCCCC---cCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence            65321   11233333344455443   3334556666553

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.04  E-value=0.016  Score=49.83  Aligned_cols=38  Identities=24%  Similarity=0.281  Sum_probs=34.8

Q ss_pred             cCCCcHHHHHHhhccCccccchhhhhhhhhhcccccCh
Q 045821           18 ISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSE   55 (352)
Q Consensus        18 ~~~lp~dl~~~il~r~p~~~~~~l~~v~k~W~~l~~s~   55 (352)
                      |.+||||+++.|++-++.+.+.+...|||+|..+....
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de  135 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDE  135 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccc
Confidence            67899999999999999999999999999999886543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=95.00  E-value=4.8  Score=41.04  Aligned_cols=172  Identities=10%  Similarity=0.047  Sum_probs=81.9

Q ss_pred             CeEEEEECCCCeeEecCCCCCcceeeeeEE--ECCEEEEEeCCCCCCceEEEeCCCCcEE-EecCCCCcccceeEEE--E
Q 045821          136 SEVYCYDASMNTWTDAAPMSTARCYFPCGV--LNQKIYCIGGLGDTHSWDVYDPRTNNWK-LHTEPNIFTEIEDSFV--M  210 (352)
Q Consensus       136 ~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~gG~~~~~~v~~yd~~t~~W~-~~~~~~~~~~~~~~~~--~  210 (352)
                      ..+.+||..+++-...-..... .-.+++.  .++.+++.|+.+  ..+.+||..+..-. .+.   .......+..  -
T Consensus       555 g~v~lWd~~~~~~~~~~~~H~~-~V~~l~~~p~~~~~L~Sgs~D--g~v~iWd~~~~~~~~~~~---~~~~v~~v~~~~~  628 (793)
T PLN00181        555 GVVQVWDVARSQLVTEMKEHEK-RVWSIDYSSADPTLLASGSDD--GSVKLWSINQGVSIGTIK---TKANICCVQFPSE  628 (793)
T ss_pred             CeEEEEECCCCeEEEEecCCCC-CEEEEEEcCCCCCEEEEEcCC--CEEEEEECCCCcEEEEEe---cCCCeEEEEEeCC
Confidence            4678889877653221111111 1122222  246677777765  67889998765422 221   1111111211  2


Q ss_pred             CCEEEEEccCCCCCCceEEEEEeCCCCc--eeecCCCCCCCCCCcEE-EECCEEEEEecCCCCeEEEEeCCCC----ceE
Q 045821          211 DGKIYIRCSASAATSHVCALVYEPSTDS--WLHADANMASGWRGPAV-VVDDALYVLDQSSGTKLMMWQKESR----EWS  283 (352)
Q Consensus       211 ~g~iyv~GG~~~~~~~~~i~~yd~~~~~--W~~~~~~~~~~~~~~~~-~~~~~l~~~gg~~~~~v~~yd~~~~----~W~  283 (352)
                      ++.+++.|+.++     .+..||..+..  ...+..   +...-..+ ..++..++.++.++ .+.+||....    .|.
T Consensus       629 ~g~~latgs~dg-----~I~iwD~~~~~~~~~~~~~---h~~~V~~v~f~~~~~lvs~s~D~-~ikiWd~~~~~~~~~~~  699 (793)
T PLN00181        629 SGRSLAFGSADH-----KVYYYDLRNPKLPLCTMIG---HSKTVSYVRFVDSSTLVSSSTDN-TLKLWDLSMSISGINET  699 (793)
T ss_pred             CCCEEEEEeCCC-----eEEEEECCCCCccceEecC---CCCCEEEEEEeCCCEEEEEECCC-EEEEEeCCCCccccCCc
Confidence            567777765542     68888886542  112111   11011112 23566666776665 7999998643    233


Q ss_pred             EccCCCCCcCCCCceEEEeCCEEEEEcCCce-EEEEEcCC
Q 045821          284 PVGRLSTLLTRPPCKLVAIGKTIFVIGKGCS-AVVIDVGN  322 (352)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~-~~~~d~~~  322 (352)
                      .+..+........+.....++.+++.|+.++ +.+|+...
T Consensus       700 ~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~  739 (793)
T PLN00181        700 PLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAF  739 (793)
T ss_pred             ceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence            3322211001111122223455666665544 55677653

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.72  E-value=2.5  Score=40.70  Aligned_cols=117  Identities=17%  Similarity=0.239  Sum_probs=68.2

Q ss_pred             EEEECCEEEEEeCCCCCCCCCCeEEEEECCCCe--eEecCCCCCc--------ceeeeeEEECCEEEEEeCCCCCCceEE
Q 045821          115 FEVLGKNAYLLGGCGWSEDATSEVYCYDASMNT--WTDAAPMSTA--------RCYFPCGVLNQKIYCIGGLGDTHSWDV  184 (352)
Q Consensus       115 ~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~gG~~~~~~v~~  184 (352)
                      -++.++.||+...       ...++.+|..|++  |+.-...+..        ......++.+++||+... +  ..+..
T Consensus        65 Pvv~~g~vyv~s~-------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-d--g~l~A  134 (527)
T TIGR03075        65 PLVVDGVMYVTTS-------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-D--ARLVA  134 (527)
T ss_pred             CEEECCEEEEECC-------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-C--CEEEE
Confidence            3566899998643       2468899998875  8754432211        111234566888887543 2  56899


Q ss_pred             EeCCCCc--EEEec-CCCCc-ccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCc--eee
Q 045821          185 YDPRTNN--WKLHT-EPNIF-TEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDS--WLH  241 (352)
Q Consensus       185 yd~~t~~--W~~~~-~~~~~-~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~--W~~  241 (352)
                      +|..|.+  |+.-. .+... .....-++.+++||+-....+......+..||..+++  |+.
T Consensus       135 LDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~  197 (527)
T TIGR03075       135 LDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR  197 (527)
T ss_pred             EECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence            9998875  86532 11111 1122345678888875322211222368888887764  763

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=94.66  E-value=3.9  Score=38.37  Aligned_cols=181  Identities=10%  Similarity=0.028  Sum_probs=93.0

Q ss_pred             CCeEEEEECCCCeeEecCCCCCcceeeeeEEECC-EEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCE
Q 045821          135 TSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQ-KIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGK  213 (352)
Q Consensus       135 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~  213 (352)
                      ...++++|+.+++.+.+...+......... -++ +|++....+....++.+|..+..-+++...+. ........-+|+
T Consensus       225 ~~~i~~~dl~~g~~~~l~~~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~-~~~~~~~spDG~  302 (435)
T PRK05137        225 RPRVYLLDLETGQRELVGNFPGMTFAPRFS-PDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPA-IDTSPSYSPDGS  302 (435)
T ss_pred             CCEEEEEECCCCcEEEeecCCCcccCcEEC-CCCCEEEEEEecCCCceEEEEECCCCceEEccCCCC-ccCceeEcCCCC
Confidence            368999999998887776544322211111 144 55444433333778999999888777653221 111122333554


Q ss_pred             EEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECC-EEEEEecCCC-CeEEEEeCCCCceEEccCCCCC
Q 045821          214 IYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDD-ALYVLDQSSG-TKLMMWQKESREWSPVGRLSTL  291 (352)
Q Consensus       214 iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~l~~~gg~~~-~~v~~yd~~~~~W~~~~~~~~~  291 (352)
                      -.++....  .....++.+|..+...+.+... ..........-+| .|++.....+ ..++.+|+.++....+....  
T Consensus       303 ~i~f~s~~--~g~~~Iy~~d~~g~~~~~lt~~-~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~--  377 (435)
T PRK05137        303 QIVFESDR--SGSPQLYVMNADGSNPRRISFG-GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGF--  377 (435)
T ss_pred             EEEEEECC--CCCCeEEEEECCCCCeEEeecC-CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCC--
Confidence            33332221  1123688899887777766432 1111222233344 5555443222 47899998877665554211  


Q ss_pred             cCCCCceEEEeCCEEEEEc---CC---ceEEEEEcCCc
Q 045821          292 LTRPPCKLVAIGKTIFVIG---KG---CSAVVIDVGNI  323 (352)
Q Consensus       292 ~~~~~~~~~~~~~~i~v~g---G~---~~~~~~d~~~~  323 (352)
                       ..........+..|+...   |.   ...+++|....
T Consensus       378 -~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        378 -LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             -CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence             111223333344455443   22   24566777543

>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes

Probab=94.61  E-value=2.5  Score=35.89  Aligned_cols=175  Identities=10%  Similarity=0.160  Sum_probs=80.8

Q ss_pred             CCCCeeEec---cCCC--cccCCcceEEEEECCEEEEEeC-CCCCCCCCCeEEEEE---CCCCeeEe--cCCCCC-----
Q 045821           93 TRRSWKMIH---ELPA--RTLRRKGMGFEVLGKNAYLLGG-CGWSEDATSEVYCYD---ASMNTWTD--AAPMST-----  156 (352)
Q Consensus        93 ~~~~w~~~~---~~~~--~~~~~~~~~~~~~~~~iyv~GG-~~~~~~~~~~~~~~d---~~t~~W~~--~~~~~~-----  156 (352)
                      ..++|+.-.   ++..  +....++++..++++++|.+=- ..-........+.||   ...+.|+.  ++..+.     
T Consensus        53 dG~TWttPEwLtd~H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~  132 (367)
T PF12217_consen   53 DGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAG  132 (367)
T ss_dssp             TTSS----EESS---TTTTTEEEE-B-EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT-----
T ss_pred             CCCcccCchhhhhcCCCCCccceeeeeeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeeccccccccccc
Confidence            578886432   2211  1134567788899999986632 222223344455555   33566764  443333     


Q ss_pred             --cceeeeeEEECCEEEEEeCCCCC---Cc--eEEEeCC----CCcE-EEecC-CCCcccceeEEEECCEEEEEccCCCC
Q 045821          157 --ARCYFPCGVLNQKIYCIGGLGDT---HS--WDVYDPR----TNNW-KLHTE-PNIFTEIEDSFVMDGKIYIRCSASAA  223 (352)
Q Consensus       157 --~r~~~~~~~~~~~iyv~gG~~~~---~~--v~~yd~~----t~~W-~~~~~-~~~~~~~~~~~~~~g~iyv~GG~~~~  223 (352)
                        .-.-|+.+.+++.-|.+|=...+   ..  +..|...    ...- +.++. ........+.-.++|.||+..-....
T Consensus       133 ~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~  212 (367)
T PF12217_consen  133 VAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLP  212 (367)
T ss_dssp             ---SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-T
T ss_pred             ceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCC
Confidence              23467888888877777743332   22  2223221    1111 22221 11222334556789999998533322


Q ss_pred             -CCceEEEEEeCCCCceeecCCCCCCCCCC-cEEEECCEEEEEecC
Q 045821          224 -TSHVCALVYEPSTDSWLHADANMASGWRG-PAVVVDDALYVLDQS  267 (352)
Q Consensus       224 -~~~~~i~~yd~~~~~W~~~~~~~~~~~~~-~~~~~~~~l~~~gg~  267 (352)
                       .....+.+-+.....|+.+.-+....... +....++.||++|..
T Consensus       213 ~~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgsE  258 (367)
T PF12217_consen  213 TNPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGSE  258 (367)
T ss_dssp             TS---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE-
T ss_pred             CCCcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEecc
Confidence             33346778888889999886542222221 235679999999863

This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=94.54  E-value=2.7  Score=36.05  Aligned_cols=192  Identities=14%  Similarity=0.160  Sum_probs=105.6

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCC---CCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNS---TRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDAS  144 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~---~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~  144 (352)
                      .+.+|++.+....   .++.|.-..   ..+.....-.+|   .+-.+.+.++.+|.+|.--      .....+.+||..
T Consensus        30 ~~~iy~~~~~~~~---~v~ey~~~~~f~~~~~~~~~~~Lp---~~~~GtG~vVYngslYY~~------~~s~~IvkydL~   97 (250)
T PF02191_consen   30 SEKIYVTSGFSGN---TVYEYRNYEDFLRNGRSSRTYKLP---YPWQGTGHVVYNGSLYYNK------YNSRNIVKYDLT   97 (250)
T ss_pred             CCCEEEECccCCC---EEEEEcCHhHHhhcCCCceEEEEe---ceeccCCeEEECCcEEEEe------cCCceEEEEECc
Confidence            6778888665222   444442200   112222222333   3455566677788877653      346889999999


Q ss_pred             CCeeE---ecCCCC---------CcceeeeeEEECCEEEEEeCCCCC---CceEEEeCCC----CcEEEecCCCCcccce
Q 045821          145 MNTWT---DAAPMS---------TARCYFPCGVLNQKIYCIGGLGDT---HSWDVYDPRT----NNWKLHTEPNIFTEIE  205 (352)
Q Consensus       145 t~~W~---~~~~~~---------~~r~~~~~~~~~~~iyv~gG~~~~---~~v~~yd~~t----~~W~~~~~~~~~~~~~  205 (352)
                      +++-.   .++...         .+......++-++-++|+-.....   -.+-..|+.+    .+|..-  . ..+...
T Consensus        98 t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~--~-~k~~~~  174 (250)
T PF02191_consen   98 TRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTS--Y-PKRSAG  174 (250)
T ss_pred             CCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEec--c-Cchhhc
Confidence            98744   444321         112223444445556666443322   3334556654    357642  2 223333


Q ss_pred             eEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcE-E---EECCEEEEEecCCCCeEEEEeCC
Q 045821          206 DSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPA-V---VVDDALYVLDQSSGTKLMMWQKE  278 (352)
Q Consensus       206 ~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~-~---~~~~~l~~~gg~~~~~v~~yd~~  278 (352)
                      .++.+=|.||++....... ..-.++||+.+++=..+..+...+....+ +   ..+.+||+...-   .+..|+..
T Consensus       175 naFmvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~G---~~v~Y~v~  247 (250)
T PF02191_consen  175 NAFMVCGVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWDNG---YQVTYDVR  247 (250)
T ss_pred             ceeeEeeEEEEEEECCCCC-cEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEECC---eEEEEEEE
Confidence            4677789999996554433 44567899998876655444444433333 2   247889988643   67777653

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PRK03629 tolB translocation protein TolB; Provisional

Probab=94.28  E-value=4.7  Score=37.75  Aligned_cols=148  Identities=9%  Similarity=-0.030  Sum_probs=80.0

Q ss_pred             CCeEEEEECCCCeeEecCCCCCcceeeeeEEECC-EEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCE
Q 045821          135 TSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQ-KIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGK  213 (352)
Q Consensus       135 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~  213 (352)
                      ...++++|..+++-+.+...+..-.... ..-++ +|++.........++.+|..++..+++..... ........-+|+
T Consensus       222 ~~~i~i~dl~~G~~~~l~~~~~~~~~~~-~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~-~~~~~~wSPDG~  299 (429)
T PRK03629        222 RSALVIQTLANGAVRQVASFPRHNGAPA-FSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS-NNTEPTWFPDSQ  299 (429)
T ss_pred             CcEEEEEECCCCCeEEccCCCCCcCCeE-ECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCC-CcCceEECCCCC
Confidence            3578999998887766665433211111 11144 56554333322578999999988877653321 111122233555


Q ss_pred             EEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECC-EEEEEecCCC-CeEEEEeCCCCceEEccC
Q 045821          214 IYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDD-ALYVLDQSSG-TKLMMWQKESREWSPVGR  287 (352)
Q Consensus       214 iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~l~~~gg~~~-~~v~~yd~~~~~W~~~~~  287 (352)
                      ..++....  .....++.+|..+..-+.+.... .........-+| .|++.+...+ ..++++|++++.+..+..
T Consensus       300 ~I~f~s~~--~g~~~Iy~~d~~~g~~~~lt~~~-~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~  372 (429)
T PRK03629        300 NLAYTSDQ--AGRPQVYKVNINGGAPQRITWEG-SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTD  372 (429)
T ss_pred             EEEEEeCC--CCCceEEEEECCCCCeEEeecCC-CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCC
Confidence            33332222  11236888888877666653211 111122233344 4545444332 478999999999887763

>PRK03629 tolB translocation protein TolB; Provisional

Probab=94.23  E-value=4.8  Score=37.67  Aligned_cols=188  Identities=8%  Similarity=0.008  Sum_probs=94.9

Q ss_pred             eeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECC-EEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceee
Q 045821           83 VCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGK-NAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYF  161 (352)
Q Consensus        83 ~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~  161 (352)
                      ..++.+|.  .++.-..+...+.    .........++ .|++.....    ...+++.+|..+++.+.+..........
T Consensus       223 ~~i~i~dl--~~G~~~~l~~~~~----~~~~~~~SPDG~~La~~~~~~----g~~~I~~~d~~tg~~~~lt~~~~~~~~~  292 (429)
T PRK03629        223 SALVIQTL--ANGAVRQVASFPR----HNGAPAFSPDGSKLAFALSKT----GSLNLYVMDLASGQIRQVTDGRSNNTEP  292 (429)
T ss_pred             cEEEEEEC--CCCCeEEccCCCC----CcCCeEECCCCCEEEEEEcCC----CCcEEEEEECCCCCEEEccCCCCCcCce
Confidence            45666677  6666555554431    11111222244 455543321    2346999999988877765433211111


Q ss_pred             eeEEECCE-EEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCcee
Q 045821          162 PCGVLNQK-IYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWL  240 (352)
Q Consensus       162 ~~~~~~~~-iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~  240 (352)
                       ...-+++ |+..........++.+|..+..-+++.... .........-+|+..++.+...  ....++.+|+.++.++
T Consensus       293 -~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~-~~~~~~~~SpDG~~Ia~~~~~~--g~~~I~~~dl~~g~~~  368 (429)
T PRK03629        293 -TWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEG-SQNQDADVSSDGKFMVMVSSNG--GQQHIAKQDLATGGVQ  368 (429)
T ss_pred             -EECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCC-CCccCEEECCCCCEEEEEEccC--CCceEEEEECCCCCeE
Confidence             1111444 443332222257888898887766664221 1111222333554444433322  1236888999999888


Q ss_pred             ecCCCCCCCCCCcEEEECCEEEEEecCCC--CeEEEEeCCCCceEEcc
Q 045821          241 HADANMASGWRGPAVVVDDALYVLDQSSG--TKLMMWQKESREWSPVG  286 (352)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~l~~~gg~~~--~~v~~yd~~~~~W~~~~  286 (352)
                      .+....  ........-+|+.+++.+..+  ..++..+.+...=..+.
T Consensus       369 ~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~  414 (429)
T PRK03629        369 VLTDTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP  414 (429)
T ss_pred             EeCCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECc
Confidence            876421  112334555666555544333  34667777655444443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=94.09  E-value=5.1  Score=37.40  Aligned_cols=190  Identities=9%  Similarity=-0.037  Sum_probs=106.8

Q ss_pred             ceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECC-EEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCccee
Q 045821           82 RVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGK-NAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCY  160 (352)
Q Consensus        82 ~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~  160 (352)
                      ...+|.+|.  .++.=+.+...+.    .........++ +|.+.....    ...++|.+|..+++++.+...+..-..
T Consensus       212 ~~~Iyv~dl--~tg~~~~lt~~~g----~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~dl~~g~~~~LT~~~~~d~~  281 (419)
T PRK04043        212 KPTLYKYNL--YTGKKEKIASSQG----MLVVSDVSKDGSKLLLTMAPK----GQPDIYLYDTNTKTLTQITNYPGIDVN  281 (419)
T ss_pred             CCEEEEEEC--CCCcEEEEecCCC----cEEeeEECCCCCEEEEEEccC----CCcEEEEEECCCCcEEEcccCCCccCc
Confidence            458899999  8887777765431    11111223344 555544322    247899999999999888754431111


Q ss_pred             eeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCC----CceEEEEEeCCC
Q 045821          161 FPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAAT----SHVCALVYEPST  236 (352)
Q Consensus       161 ~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~----~~~~i~~yd~~~  236 (352)
                      .....-+.+|++.........++++|..+++.+++..-..  . .....-+|+..++-......    ....++.+|+.+
T Consensus       282 p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~-~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~  358 (419)
T PRK04043        282 GNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--N-NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS  358 (419)
T ss_pred             cEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--c-CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC
Confidence            1111113467776654433789999999998877653211  1 12333355433332322211    224789999999


Q ss_pred             CceeecCCCCCCCCCCcEEEECCE-EEEEecCCC-CeEEEEeCCCCceEEcc
Q 045821          237 DSWLHADANMASGWRGPAVVVDDA-LYVLDQSSG-TKLMMWQKESREWSPVG  286 (352)
Q Consensus       237 ~~W~~~~~~~~~~~~~~~~~~~~~-l~~~gg~~~-~~v~~yd~~~~~W~~~~  286 (352)
                      +.++.+....  ........-+|+ |++.....+ ..++.++.+.+.=..++
T Consensus       359 g~~~~LT~~~--~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~  408 (419)
T PRK04043        359 DYIRRLTANG--VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFP  408 (419)
T ss_pred             CCeEECCCCC--CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEee
Confidence            9998886531  222334444555 544443322 35788888765544444

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=94.09  E-value=3.1  Score=34.87  Aligned_cols=176  Identities=10%  Similarity=0.037  Sum_probs=101.2

Q ss_pred             CCeEEEEECCCCeeEecCCCCCcceeeeeEEEC--CEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECC
Q 045821          135 TSEVYCYDASMNTWTDAAPMSTARCYFPCGVLN--QKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDG  212 (352)
Q Consensus       135 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~--~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g  212 (352)
                      .+.+.+||..|++-.+--.  .--..-..+.+|  ..+.+.|+.+  .++.++|..+++.+++..+..+.....++.+.+
T Consensus        80 Dk~v~vwDV~TGkv~Rr~r--gH~aqVNtV~fNeesSVv~SgsfD--~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~  155 (307)
T KOG0316|consen   80 DKAVQVWDVNTGKVDRRFR--GHLAQVNTVRFNEESSVVASGSFD--SSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE  155 (307)
T ss_pred             CceEEEEEcccCeeeeecc--cccceeeEEEecCcceEEEecccc--ceeEEEEcccCCCCccchhhhhcCceeEEEecc
Confidence            4678999999986322110  000111223343  3566666666  789999999999988887777777777888888


Q ss_pred             EEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceEEc--cCCCC
Q 045821          213 KIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPV--GRLST  290 (352)
Q Consensus       213 ~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~--~~~~~  290 (352)
                      ...+.|..++     .+-.||...++-..  +-+..+.....+..++...++|..++ .+...|-+++.--+.  +....
T Consensus       156 heIvaGS~DG-----tvRtydiR~G~l~s--Dy~g~pit~vs~s~d~nc~La~~l~s-tlrLlDk~tGklL~sYkGhkn~  227 (307)
T KOG0316|consen  156 HEIVAGSVDG-----TVRTYDIRKGTLSS--DYFGHPITSVSFSKDGNCSLASSLDS-TLRLLDKETGKLLKSYKGHKNM  227 (307)
T ss_pred             cEEEeeccCC-----cEEEEEeecceeeh--hhcCCcceeEEecCCCCEEEEeeccc-eeeecccchhHHHHHhcccccc
Confidence            8888865553     46678876554321  11111222222344666666665544 788888877653211  11111


Q ss_pred             CcCCCCceEEEeCCEEEEEcCCc--eEEEEEcCCccc
Q 045821          291 LLTRPPCKLVAIGKTIFVIGKGC--SAVVIDVGNIGN  325 (352)
Q Consensus       291 ~~~~~~~~~~~~~~~i~v~gG~~--~~~~~d~~~~~w  325 (352)
                      . .+  ..+...+..-.|++|..  .++++|.....-
T Consensus       228 e-yk--ldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~  261 (307)
T KOG0316|consen  228 E-YK--LDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ  261 (307)
T ss_pred             e-ee--eeeeecccceeEEeccCCceEEEEEecccee
Confidence            0 11  12223344456677765  366788776553

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=94.00  E-value=3.7  Score=35.48  Aligned_cols=204  Identities=12%  Similarity=0.141  Sum_probs=100.4

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCC----CCCcceeeeeEEE-C-CEEEEEeCCCCCCceEEEeCCCCcE
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAP----MSTARCYFPCGVL-N-QKIYCIGGLGDTHSWDVYDPRTNNW  192 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~----~~~~r~~~~~~~~-~-~~iyv~gG~~~~~~v~~yd~~t~~W  192 (352)
                      .+.....||.+      +.+-+|+..++.=+....    ++.-..+.+++.+ + ++|.--.| +  ..+-.+|+++.+=
T Consensus       108 Sg~~VAcGGLd------N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SG-D--~TCalWDie~g~~  178 (343)
T KOG0286|consen  108 SGNFVACGGLD------NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSG-D--MTCALWDIETGQQ  178 (343)
T ss_pred             CCCeEEecCcC------ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCC-C--ceEEEEEcccceE
Confidence            56666778764      346788887653332222    2222334444444 3 34433333 2  6778899998753


Q ss_pred             EEecCCCCcccceeEEE---ECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCC
Q 045821          193 KLHTEPNIFTEIEDSFV---MDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSG  269 (352)
Q Consensus       193 ~~~~~~~~~~~~~~~~~---~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~  269 (352)
                      ..  ..........+..   .+++.||.||.+.     ....+|.....-.+.=.-...........-+|.-+..|..++
T Consensus       179 ~~--~f~GH~gDV~slsl~p~~~ntFvSg~cD~-----~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~  251 (343)
T KOG0286|consen  179 TQ--VFHGHTGDVMSLSLSPSDGNTFVSGGCDK-----SAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDA  251 (343)
T ss_pred             EE--EecCCcccEEEEecCCCCCCeEEeccccc-----ceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCc
Confidence            22  1211111111111   2789999988774     234445544432221000000001111233566666665554


Q ss_pred             CeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEcCCc-eEEEEEcCCcccccceEEeccCCCCCCCCcceeeE
Q 045821          270 TKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGC-SAVVIDVGNIGNIGGIMVSSSIPKLNDNDDIISCK  348 (352)
Q Consensus       270 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~-~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  348 (352)
                       ..-.||+..++=-.+=.-+..........+...|+++..|..+ ++.+.|.-+         -.++-.|..|+|-++|-
T Consensus       252 -tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk---------~e~vg~L~GHeNRvScl  321 (343)
T KOG0286|consen  252 -TCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK---------GERVGVLAGHENRVSCL  321 (343)
T ss_pred             -eeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccc---------cceEEEeeccCCeeEEE
Confidence             7788888876533222222111122223344578888877543 344455443         33455667888888763

>PRK02889 tolB translocation protein TolB; Provisional

Probab=93.82  E-value=5.8  Score=37.12  Aligned_cols=146  Identities=12%  Similarity=0.027  Sum_probs=77.0

Q ss_pred             CCeEEEEECCCCeeEecCCCCCcceeeeeEE-ECC-EEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECC
Q 045821          135 TSEVYCYDASMNTWTDAAPMSTARCYFPCGV-LNQ-KIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDG  212 (352)
Q Consensus       135 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~-~~~-~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g  212 (352)
                      ...++++|..+++-..+...+...  .+.+. -++ +|++....+....++.+|..+...+++.... .........-+|
T Consensus       219 ~~~I~~~dl~~g~~~~l~~~~g~~--~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~wSpDG  295 (427)
T PRK02889        219 KPVVYVHDLATGRRRVVANFKGSN--SAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSS-GIDTEPFFSPDG  295 (427)
T ss_pred             CcEEEEEECCCCCEEEeecCCCCc--cceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCC-CCCcCeEEcCCC
Confidence            357999999988766655433211  11111 144 5554444333367888898877766664321 111122233356


Q ss_pred             EEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECC-EEEEEecCCC-CeEEEEeCCCCceEEcc
Q 045821          213 KIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDD-ALYVLDQSSG-TKLMMWQKESREWSPVG  286 (352)
Q Consensus       213 ~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~l~~~gg~~~-~~v~~yd~~~~~W~~~~  286 (352)
                      +..++....  .....++.++..+...+.+.... .........-+| .|++.....+ ..++++|..++....+.
T Consensus       296 ~~l~f~s~~--~g~~~Iy~~~~~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt  368 (427)
T PRK02889        296 RSIYFTSDR--GGAPQIYRMPASGGAAQRVTFTG-SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT  368 (427)
T ss_pred             CEEEEEecC--CCCcEEEEEECCCCceEEEecCC-CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc
Confidence            533332222  12246888888777776664211 111122333344 4554443322 36899999988877764

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.55  E-value=6.8  Score=37.04  Aligned_cols=178  Identities=17%  Similarity=0.119  Sum_probs=89.4

Q ss_pred             CCeEEEEECCCC-e-eEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEEC
Q 045821          135 TSEVYCYDASMN-T-WTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMD  211 (352)
Q Consensus       135 ~~~~~~~d~~t~-~-W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~  211 (352)
                      ...+.+||...+ + -+.+.......  ++++.. .+++++.|+.+  ..|.++|..+.+-.+.-......-...++.-+
T Consensus       224 D~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D--~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d  299 (456)
T KOG0266|consen  224 DKTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDD--GTVRIWDVRTGECVRKLKGHSDGISGLAFSPD  299 (456)
T ss_pred             CceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCC--CcEEEEeccCCeEEEeeeccCCceEEEEECCC
Confidence            356788888433 2 34444434333  232222 45888888877  78999999986544332111111112233347


Q ss_pred             CEEEEEccCCCCCCceEEEEEeCCCCcee---ecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceE-EccC
Q 045821          212 GKIYIRCSASAATSHVCALVYEPSTDSWL---HADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWS-PVGR  287 (352)
Q Consensus       212 g~iyv~GG~~~~~~~~~i~~yd~~~~~W~---~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~-~~~~  287 (352)
                      +.+++.+..+     ..+..||..+..-.   .+................+..|++.+..+..+-.||.....-- +...
T Consensus       300 ~~~l~s~s~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~  374 (456)
T KOG0266|consen  300 GNLLVSASYD-----GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG  374 (456)
T ss_pred             CCEEEEcCCC-----ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc
Confidence            7888876443     25778888887743   2222111111111222244455555555557888888754322 1111


Q ss_pred             CCCCcCCCCceEE-EeCCEEEEEcCCc-eEEEEEcCC
Q 045821          288 LSTLLTRPPCKLV-AIGKTIFVIGKGC-SAVVIDVGN  322 (352)
Q Consensus       288 ~~~~~~~~~~~~~-~~~~~i~v~gG~~-~~~~~d~~~  322 (352)
                      .... .+..+..+ ..+++..+.|+.+ .+.++|+..
T Consensus       375 ~~~~-~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s  410 (456)
T KOG0266|consen  375 HSNL-VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS  410 (456)
T ss_pred             cCCc-ceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence            1111 11222222 2355555555444 355788775

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=93.53  E-value=3  Score=37.27  Aligned_cols=122  Identities=13%  Similarity=0.158  Sum_probs=69.0

Q ss_pred             CceEEEeCCCC-----cEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCc-eeecCCCCCCCCCCc
Q 045821          180 HSWDVYDPRTN-----NWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDS-WLHADANMASGWRGP  253 (352)
Q Consensus       180 ~~v~~yd~~t~-----~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~-W~~~~~~~~~~~~~~  253 (352)
                      ..+.+|+....     +.+.+........-.+.+.++|+|.+..|.       .+..|+...++ +..............
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~-------~l~v~~l~~~~~l~~~~~~~~~~~i~s  134 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGN-------KLYVYDLDNSKTLLKKAFYDSPFYITS  134 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETT-------EEEEEEEETTSSEEEEEEE-BSSSEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecC-------EEEEEEccCcccchhhheecceEEEEE
Confidence            45788888874     555554332223334566779996665442       47788877777 766643222222222


Q ss_pred             EEEECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEe-CCEEEEEc
Q 045821          254 AVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAI-GKTIFVIG  310 (352)
Q Consensus       254 ~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~i~v~g  310 (352)
                      ..+.++.|++-.-..+-.++.|+.+..+...++.-..  .+...++..+ ++..++.+
T Consensus       135 l~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~--~~~v~~~~~l~d~~~~i~~  190 (321)
T PF03178_consen  135 LSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQ--PRWVTAAEFLVDEDTIIVG  190 (321)
T ss_dssp             EEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS---BEEEEEEEE-SSSEEEEE
T ss_pred             EeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCC--CccEEEEEEecCCcEEEEE
Confidence            3456887776655555567788987777888875433  2334455555 54444444

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=93.20  E-value=13  Score=39.24  Aligned_cols=150  Identities=15%  Similarity=0.149  Sum_probs=83.4

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCC----------CC-c--ceeeeeEEE-C-CEEEEEeCCCCCCceE
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPM----------ST-A--RCYFPCGVL-N-QKIYCIGGLGDTHSWD  183 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~----------~~-~--r~~~~~~~~-~-~~iyv~gG~~~~~~v~  183 (352)
                      ++.+|+...      ....+++||+.++....+..-          .. .  .....++.. + +.|||....+  +.+.
T Consensus       694 ~g~LyVad~------~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n--~~Ir  765 (1057)
T PLN02919        694 NEKVYIAMA------GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES--SSIR  765 (1057)
T ss_pred             CCeEEEEEC------CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC--CeEE
Confidence            578888753      245688888887765433210          00 0  111123332 3 4699987654  7899


Q ss_pred             EEeCCCCcEEEec--CC--CC--------------cc-cc--eeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeec
Q 045821          184 VYDPRTNNWKLHT--EP--NI--------------FT-EI--EDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHA  242 (352)
Q Consensus       184 ~yd~~t~~W~~~~--~~--~~--------------~~-~~--~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~  242 (352)
                      +||+.++.-+.+.  ..  +.              .. ..  ..++.-+|.|||....+     ..|.+||+.++....+
T Consensus       766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N-----~rIrviD~~tg~v~ti  840 (1057)
T PLN02919        766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN-----HKIKKLDPATKRVTTL  840 (1057)
T ss_pred             EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC-----CEEEEEECCCCeEEEE
Confidence            9999876543221  00  00              00 01  11233467899985332     3689999988877655


Q ss_pred             CCCC----------CCCCCCc---EEEECCEEEEEecCCCCeEEEEeCCCCce
Q 045821          243 DANM----------ASGWRGP---AVVVDDALYVLDQSSGTKLMMWQKESREW  282 (352)
Q Consensus       243 ~~~~----------~~~~~~~---~~~~~~~l~~~gg~~~~~v~~yd~~~~~W  282 (352)
                      ....          ......+   ++.-+|++|+....++ .|.++|..+++-
T Consensus       841 aG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn-~Irvid~~~~~~  892 (1057)
T PLN02919        841 AGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS-LIRYLDLNKGEA  892 (1057)
T ss_pred             eccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC-EEEEEECCCCcc
Confidence            3211          0111111   2334688988876554 899999988753

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.15  E-value=7.1  Score=36.09  Aligned_cols=216  Identities=12%  Similarity=0.074  Sum_probs=106.4

Q ss_pred             CCCCeeEecc-CCCcc-cCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCC-CcceeeeeEEE-CC
Q 045821           93 TRRSWKMIHE-LPART-LRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMS-TARCYFPCGVL-NQ  168 (352)
Q Consensus        93 ~~~~w~~~~~-~~~~~-~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~-~~r~~~~~~~~-~~  168 (352)
                      ...+|.+... ..... ...+...+...++..|++|-.       ..++.=.-.-.+|+.++..+ .+......... ++
T Consensus       118 GG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~-------G~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~  190 (398)
T PLN00033        118 GGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP-------AILLHTSDGGETWERIPLSPKLPGEPVLIKATGPK  190 (398)
T ss_pred             CCCCceECccCcccccccccceeeeEEECCEEEEEcCc-------eEEEEEcCCCCCceECccccCCCCCceEEEEECCC
Confidence            5788988642 11100 112234445557778887531       12222122235799876432 12112223334 45


Q ss_pred             EEEEEeCCCCCCceEEEeCCCCcEEEecCCCCc------cc--------c----ee-EEEECCEEEEEccCCCCCCceEE
Q 045821          169 KIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIF------TE--------I----ED-SFVMDGKIYIRCSASAATSHVCA  229 (352)
Q Consensus       169 ~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~------~~--------~----~~-~~~~~g~iyv~GG~~~~~~~~~i  229 (352)
                      .++++|..   ..+++=+-.-.+|+.+...+..      ..        +    .. ...-++.++++|-..      .+
T Consensus       191 ~~~ivg~~---G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G------~~  261 (398)
T PLN00033        191 SAEMVTDE---GAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRG------NF  261 (398)
T ss_pred             ceEEEecc---ceEEEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCc------cE
Confidence            67777743   3344444445689987322110      00        0    00 112245566663211      23


Q ss_pred             E-EEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCce-----EEccCCCCCcCCCCceEEE-e
Q 045821          230 L-VYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREW-----SPVGRLSTLLTRPPCKLVA-I  302 (352)
Q Consensus       230 ~-~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W-----~~~~~~~~~~~~~~~~~~~-~  302 (352)
                      + ..|.....|+.+..+............++.+++++...  .+..-+.....|     .++.....  .....++.. -
T Consensus       262 ~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G--~l~~S~d~G~~~~~~~f~~~~~~~~--~~~l~~v~~~~  337 (398)
T PLN00033        262 YLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGG--GLYVSKGTGLTEEDFDFEEADIKSR--GFGILDVGYRS  337 (398)
T ss_pred             EEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCc--eEEEecCCCCcccccceeecccCCC--CcceEEEEEcC
Confidence            3 34444445999877655555555556688888887543  455555555545     44432211  111223332 3


Q ss_pred             CCEEEEEcCCceEEEEEcCCcccccc
Q 045821          303 GKTIFVIGKGCSAVVIDVGNIGNIGG  328 (352)
Q Consensus       303 ~~~i~v~gG~~~~~~~d~~~~~w~~~  328 (352)
                      ++.+++.|..--.+.-...-.+|.+.
T Consensus       338 d~~~~a~G~~G~v~~s~D~G~tW~~~  363 (398)
T PLN00033        338 KKEAWAAGGSGILLRSTDGGKSWKRD  363 (398)
T ss_pred             CCcEEEEECCCcEEEeCCCCcceeEc
Confidence            66788888654444445556678774

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=93.05  E-value=3.8  Score=37.58  Aligned_cols=199  Identities=12%  Similarity=0.087  Sum_probs=92.6

Q ss_pred             eEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEE----ECCEEEEEeCCCCCCceEEEeCC
Q 045821          113 MGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGV----LNQKIYCIGGLGDTHSWDVYDPR  188 (352)
Q Consensus       113 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~----~~~~iyv~gG~~~~~~v~~yd~~  188 (352)
                      ++++..+...|++||.     ...+++++...++.--.+-   .+++ ...+.    -|+..++.||.+  ..|.+|+..
T Consensus        85 ~al~s~n~G~~l~ag~-----i~g~lYlWelssG~LL~v~---~aHY-Q~ITcL~fs~dgs~iiTgskD--g~V~vW~l~  153 (476)
T KOG0646|consen   85 HALASSNLGYFLLAGT-----ISGNLYLWELSSGILLNVL---SAHY-QSITCLKFSDDGSHIITGSKD--GAVLVWLLT  153 (476)
T ss_pred             eeeecCCCceEEEeec-----ccCcEEEEEeccccHHHHH---Hhhc-cceeEEEEeCCCcEEEecCCC--ccEEEEEEE
Confidence            5566677778888872     3456888888887522211   2222 22222    267777777766  445554432


Q ss_pred             CC--cEEEecCCCCcccceeEEE----------ECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEE
Q 045821          189 TN--NWKLHTEPNIFTEIEDSFV----------MDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVV  256 (352)
Q Consensus       189 t~--~W~~~~~~~~~~~~~~~~~----------~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~  256 (352)
                      +-  .-..-.+.|......+...          .+.++|-.+ .+     ..+-+||.+.+.--.-- ..+......++-
T Consensus       154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS-~D-----~t~k~wdlS~g~LLlti-~fp~si~av~lD  226 (476)
T KOG0646|consen  154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS-ED-----RTIKLWDLSLGVLLLTI-TFPSSIKAVALD  226 (476)
T ss_pred             eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec-CC-----ceEEEEEeccceeeEEE-ecCCcceeEEEc
Confidence            10  0000011122222222211          133455542 11     25667787776432110 112222222222


Q ss_pred             ECCEEEEEecCCCCeEEEEeCCCCceEE--------------ccCCCCCcC-CCCceE-EEeCCEEEEEcCCceE-EEEE
Q 045821          257 VDDALYVLDQSSGTKLMMWQKESREWSP--------------VGRLSTLLT-RPPCKL-VAIGKTIFVIGKGCSA-VVID  319 (352)
Q Consensus       257 ~~~~l~~~gg~~~~~v~~yd~~~~~W~~--------------~~~~~~~~~-~~~~~~-~~~~~~i~v~gG~~~~-~~~d  319 (352)
                      ..+..+++|+..| .++..+..+-.=..              +..+-.... ..-.++ +..++.+++.|+.+.. .+.|
T Consensus       227 pae~~~yiGt~~G-~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd  305 (476)
T KOG0646|consen  227 PAERVVYIGTEEG-KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD  305 (476)
T ss_pred             ccccEEEecCCcc-eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence            3445555666555 55555443211000              111111001 111222 3458999999988764 4799


Q ss_pred             cCCcccccceE
Q 045821          320 VGNIGNIGGIM  330 (352)
Q Consensus       320 ~~~~~w~~~~~  330 (352)
                      +...+-.+...
T Consensus       306 i~S~Q~iRtl~  316 (476)
T KOG0646|consen  306 IYSKQCIRTLQ  316 (476)
T ss_pred             cchHHHHHHHh
Confidence            98887666433

>smart00284 OLF Olfactomedin-like domains

Probab=92.95  E-value=5.4  Score=34.19  Aligned_cols=192  Identities=16%  Similarity=0.200  Sum_probs=103.7

Q ss_pred             CCEEEEEEecCCCCceeEEEe----cCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEEC
Q 045821           68 ETWIYAFCRDNKLERVCCYVL----DPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDA  143 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~----d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~  143 (352)
                      ++.+|++.+.. .....++.|    |.  ......+.-.+|   .+..+.+.++.+|.+|.--      .....+.+||.
T Consensus        34 ~~~~wv~~~~~-~~~~~v~ey~~~~~f--~~~~~~~~~~Lp---~~~~GtG~VVYngslYY~~------~~s~~iiKydL  101 (255)
T smart00284       34 KSLYWYMPLNT-RVLRSVREYSSMSDF--QMGKNPTDHPLP---HAGQGTGVVVYNGSLYFNK------FNSHDICRFDL  101 (255)
T ss_pred             CceEEEEcccc-CCCcEEEEecCHHHH--hccCCceEEECC---CccccccEEEECceEEEEe------cCCccEEEEEC
Confidence            46788875532 122334444    22  333443333455   4566777888899998853      23577999999


Q ss_pred             CCCeeEecCCCCCc------------ceeeeeEEECCEEEEEeCCCCC---CceEEEeCCC----CcEEEecCCCCcccc
Q 045821          144 SMNTWTDAAPMSTA------------RCYFPCGVLNQKIYCIGGLGDT---HSWDVYDPRT----NNWKLHTEPNIFTEI  204 (352)
Q Consensus       144 ~t~~W~~~~~~~~~------------r~~~~~~~~~~~iyv~gG~~~~---~~v~~yd~~t----~~W~~~~~~~~~~~~  204 (352)
                      .+++-.....+|.+            ......++-++-++|+=.....   -.+-..|+.|    .+|..-  .+. +..
T Consensus       102 ~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~--~~k-~sa  178 (255)
T smart00284      102 TTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWITT--YNK-RSA  178 (255)
T ss_pred             CCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEcC--CCc-ccc
Confidence            99986433333322            1223344444445555332211   2234566654    357652  222 222


Q ss_pred             eeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcE-E---EECCEEEEEecCCCCeEEEEeCC
Q 045821          205 EDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPA-V---VVDDALYVLDQSSGTKLMMWQKE  278 (352)
Q Consensus       205 ~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~-~---~~~~~l~~~gg~~~~~v~~yd~~  278 (352)
                      ..++.+=|.||++-... .....-.+.||+.+++=..+..+.+.+....+ +   ..+.+||+....   .+..||..
T Consensus       179 ~naFmvCGvLY~~~s~~-~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wdng---~~l~Y~v~  252 (255)
T smart00284      179 SNAFMICGILYVTRSLG-SKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWNNG---HLVHYDIA  252 (255)
T ss_pred             cccEEEeeEEEEEccCC-CCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEEeCC---eEEEEEEE
Confidence            24566678999995322 12223567899988764333333333333322 2   247889988543   67777753

>PTZ00421 coronin; Provisional

Probab=92.89  E-value=9  Score=36.59  Aligned_cols=147  Identities=14%  Similarity=0.154  Sum_probs=68.8

Q ss_pred             CEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcc--cceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCcee-ecCC
Q 045821          168 QKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFT--EIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWL-HADA  244 (352)
Q Consensus       168 ~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~--~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~-~~~~  244 (352)
                      +.+++.||.+  ..+.+||..+.+-...  +....  .......-++.+.+.|+.++     .+..||+.+++-. .+..
T Consensus       138 ~~iLaSgs~D--gtVrIWDl~tg~~~~~--l~~h~~~V~sla~spdG~lLatgs~Dg-----~IrIwD~rsg~~v~tl~~  208 (493)
T PTZ00421        138 MNVLASAGAD--MVVNVWDVERGKAVEV--IKCHSDQITSLEWNLDGSLLCTTSKDK-----KLNIIDPRDGTIVSSVEA  208 (493)
T ss_pred             CCEEEEEeCC--CEEEEEECCCCeEEEE--EcCCCCceEEEEEECCCCEEEEecCCC-----EEEEEECCCCcEEEEEec
Confidence            3567777765  6788999987753221  11111  11122233677777766553     5788998766422 2211


Q ss_pred             CCCCCCCCcEE-EECCEEEEEecCC---CCeEEEEeCCCCc--eEEccCCCCCcCCCCceEEEeCCEEEEEcC--CceEE
Q 045821          245 NMASGWRGPAV-VVDDALYVLDQSS---GTKLMMWQKESRE--WSPVGRLSTLLTRPPCKLVAIGKTIFVIGK--GCSAV  316 (352)
Q Consensus       245 ~~~~~~~~~~~-~~~~~l~~~gg~~---~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG--~~~~~  316 (352)
                       .........+ ..++..++..|..   ...+.+||..+..  .... ..... ..........++.++++||  ...+.
T Consensus       209 -H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~-~~d~~-~~~~~~~~d~d~~~L~lggkgDg~Ir  285 (493)
T PTZ00421        209 -HASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTV-DLDQS-SALFIPFFDEDTNLLYIGSKGEGNIR  285 (493)
T ss_pred             -CCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEe-ccCCC-CceEEEEEcCCCCEEEEEEeCCCeEE
Confidence             1111111111 2233344444432   2479999987533  1111 11110 0000111122445555544  33566


Q ss_pred             EEEcCCcccc
Q 045821          317 VIDVGNIGNI  326 (352)
Q Consensus       317 ~~d~~~~~w~  326 (352)
                      +||+......
T Consensus       286 iwdl~~~~~~  295 (493)
T PTZ00421        286 CFELMNERLT  295 (493)
T ss_pred             EEEeeCCceE
Confidence            8998876543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=92.87  E-value=5.2  Score=33.75  Aligned_cols=185  Identities=17%  Similarity=0.204  Sum_probs=95.1

Q ss_pred             eeEecCCCCC-----ccee-eeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE---CCEEEEE
Q 045821          147 TWTDAAPMST-----ARCY-FPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM---DGKIYIR  217 (352)
Q Consensus       147 ~W~~~~~~~~-----~r~~-~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~---~g~iyv~  217 (352)
                      .|+..+++..     |-.. +....-.+.|+..||.   ..++..|.++++.+..-  .....+-++++.   +++|+- 
T Consensus       100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD---~~~y~~dlE~G~i~r~~--rGHtDYvH~vv~R~~~~qils-  173 (325)
T KOG0649|consen  100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD---GVIYQVDLEDGRIQREY--RGHTDYVHSVVGRNANGQILS-  173 (325)
T ss_pred             hhhhcCccccCcccCCccceeEeccCCCcEEEecCC---eEEEEEEecCCEEEEEE--cCCcceeeeeeecccCcceee-
Confidence            4777766543     3222 2233345788888874   56788999999876542  222333344433   345443 


Q ss_pred             ccCCCCCCceEEEEEeCCCCceeec-CC----CCCCC-CCC--cEEEECCEEEEEecCCCCeEEEEeCCCCceEEccCCC
Q 045821          218 CSASAATSHVCALVYEPSTDSWLHA-DA----NMASG-WRG--PAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLS  289 (352)
Q Consensus       218 GG~~~~~~~~~i~~yd~~~~~W~~~-~~----~~~~~-~~~--~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~  289 (352)
                      |+.++     .+-.+|..+.+-.++ .+    ...++ +..  .+...+...++.||-.  .+..|.....+-+.+-..|
T Consensus       174 G~EDG-----tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp--~lslwhLrsse~t~vfpip  246 (325)
T KOG0649|consen  174 GAEDG-----TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP--KLSLWHLRSSESTCVFPIP  246 (325)
T ss_pred             cCCCc-----cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC--ceeEEeccCCCceEEEecc
Confidence            33332     466788888776554 22    11111 222  2345566777777654  5777777776666665444


Q ss_pred             CCcCCCCceEEEeCCEEEEEcC-CceEEEEEcCCcccccceEEeccCCCCCCCC-cceeeEEeeC
Q 045821          290 TLLTRPPCKLVAIGKTIFVIGK-GCSAVVIDVGNIGNIGGIMVSSSIPKLNDND-DIISCKCLAI  352 (352)
Q Consensus       290 ~~~~~~~~~~~~~~~~i~v~gG-~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~  352 (352)
                      ..     ...+.+.++..+++| .+.+.-|.....   -.+-++.+-|...... +.-+||+|.+
T Consensus       247 a~-----v~~v~F~~d~vl~~G~g~~v~~~~l~Gv---l~a~ip~~s~~c~s~s~~~~p~k~~s~  303 (325)
T KOG0649|consen  247 AR-----VHLVDFVDDCVLIGGEGNHVQSYTLNGV---LQANIPVESTACYSASWQTSPIKFISI  303 (325)
T ss_pred             cc-----eeEeeeecceEEEeccccceeeeeeccE---EEEeccCCccceeeecccCCceEEEEe
Confidence            31     233444455555554 333322322210   1222333334444443 5556787764

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=92.64  E-value=7  Score=34.72  Aligned_cols=245  Identities=11%  Similarity=0.097  Sum_probs=119.3

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCC-C
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASM-N  146 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t-~  146 (352)
                      +..||++......+....|..|+  ..++.+.+...... ..-..+..+.-++...+..-+.     ...+-+|-..+ +
T Consensus        51 ~~~LY~v~~~~~~ggvaay~iD~--~~G~Lt~ln~~~~~-g~~p~yvsvd~~g~~vf~AnY~-----~g~v~v~p~~~dG  122 (346)
T COG2706          51 QRHLYVVNEPGEEGGVAAYRIDP--DDGRLTFLNRQTLP-GSPPCYVSVDEDGRFVFVANYH-----SGSVSVYPLQADG  122 (346)
T ss_pred             CCEEEEEEecCCcCcEEEEEEcC--CCCeEEEeeccccC-CCCCeEEEECCCCCEEEEEEcc-----CceEEEEEcccCC
Confidence            55799887665566788888999  88888877654421 1111332333333322222221     23444444433 1


Q ss_pred             e-eEec------CCCCCcc-----eeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecC--CCCcccceeEEEE-C
Q 045821          147 T-WTDA------APMSTAR-----CYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTE--PNIFTEIEDSFVM-D  211 (352)
Q Consensus       147 ~-W~~~------~~~~~~r-----~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~--~~~~~~~~~~~~~-~  211 (352)
                      . |..+      ..-|.+|     ..++-..-++++.+.--... ..+..|+...+.-....+  .++...-.+.+++ +
T Consensus       123 ~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~-Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn  201 (346)
T COG2706         123 SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT-DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPN  201 (346)
T ss_pred             ccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC-ceEEEEEcccCccccccccccCCCCCcceEEEcCC
Confidence            1 2211      1112233     21222222443333221111 678888888665443322  2222222245555 4


Q ss_pred             C-EEEEEccCCCCCCceEEEEEeCCCCceeecCCC--CCCCCC----CcE--EEECCEEEEEecCCCCeEEEE--eCCCC
Q 045821          212 G-KIYIRCSASAATSHVCALVYEPSTDSWLHADAN--MASGWR----GPA--VVVDDALYVLDQSSGTKLMMW--QKESR  280 (352)
Q Consensus       212 g-~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~--~~~~~~----~~~--~~~~~~l~~~gg~~~~~v~~y--d~~~~  280 (352)
                      + ..|++..   -.....++.||....+.++++..  ++..+.    .++  +..+|+.+.......+.|.+|  |+.++
T Consensus       202 ~k~aY~v~E---L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g  278 (346)
T COG2706         202 GKYAYLVNE---LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGG  278 (346)
T ss_pred             CcEEEEEec---cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCC
Confidence            4 5688842   23344788888888888877542  222222    222  233555443433222366555  77777


Q ss_pred             ceEEccCCCC-CcCCCCceEEEeCCEEEEEcCC-ceEEEEEcCCcc
Q 045821          281 EWSPVGRLST-LLTRPPCKLVAIGKTIFVIGKG-CSAVVIDVGNIG  324 (352)
Q Consensus       281 ~W~~~~~~~~-~~~~~~~~~~~~~~~i~v~gG~-~~~~~~d~~~~~  324 (352)
                      .-..+..-+. ...-+.|.+..-++.|++.+-. +.+.+|..++.+
T Consensus       279 ~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T  324 (346)
T COG2706         279 KLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET  324 (346)
T ss_pred             EEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence            6555543221 1122345555556666666643 345567766655

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=92.56  E-value=5.6  Score=33.38  Aligned_cols=189  Identities=13%  Similarity=0.093  Sum_probs=103.5

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECC--EEEEEeCCCCCCCCCCeEEEEECCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGK--NAYLLGGCGWSEDATSEVYCYDASM  145 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~d~~t  145 (352)
                      ++.-++.||.    ...++++|-  ++++-.+.  +.   ........+..++  .+.+-|+.      ..++..||..+
T Consensus        70 Dnskf~s~Gg----Dk~v~vwDV--~TGkv~Rr--~r---gH~aqVNtV~fNeesSVv~Sgsf------D~s~r~wDCRS  132 (307)
T KOG0316|consen   70 DNSKFASCGG----DKAVQVWDV--NTGKVDRR--FR---GHLAQVNTVRFNEESSVVASGSF------DSSVRLWDCRS  132 (307)
T ss_pred             cccccccCCC----CceEEEEEc--ccCeeeee--cc---cccceeeEEEecCcceEEEeccc------cceeEEEEccc
Confidence            4444555543    234666688  77653222  11   1122333444543  35544543      45688899999


Q ss_pred             CeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCC
Q 045821          146 NTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATS  225 (352)
Q Consensus       146 ~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~  225 (352)
                      ++.+.++.+..++-.-.++.+.+..++.|..+  ..+-.||+..++-  ..+-...+-.+....-+++-.++|..++   
T Consensus       133 ~s~ePiQildea~D~V~Si~v~~heIvaGS~D--GtvRtydiR~G~l--~sDy~g~pit~vs~s~d~nc~La~~l~s---  205 (307)
T KOG0316|consen  133 RSFEPIQILDEAKDGVSSIDVAEHEIVAGSVD--GTVRTYDIRKGTL--SSDYFGHPITSVSFSKDGNCSLASSLDS---  205 (307)
T ss_pred             CCCCccchhhhhcCceeEEEecccEEEeeccC--CcEEEEEeeccee--ehhhcCCcceeEEecCCCCEEEEeeccc---
Confidence            99888888888888777888888888877766  6788899987642  2221112222223334555555543332   


Q ss_pred             ceEEEEEeCCCCceeecCCCCCCCCCC-cEEEECCEEEEEecCCCCeEEEEeCCCCce
Q 045821          226 HVCALVYEPSTDSWLHADANMASGWRG-PAVVVDDALYVLDQSSGTKLMMWQKESREW  282 (352)
Q Consensus       226 ~~~i~~yd~~~~~W~~~~~~~~~~~~~-~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W  282 (352)
                        .+...|..+++--..-.......+. -.+..+..-.+++|.....++.||....+-
T Consensus       206 --tlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~  261 (307)
T KOG0316|consen  206 --TLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ  261 (307)
T ss_pred             --eeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecccee
Confidence              3444455554432211101111111 123344455667776555899999987654

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=92.48  E-value=8.8  Score=35.47  Aligned_cols=199  Identities=13%  Similarity=0.188  Sum_probs=98.5

Q ss_pred             CCCCeeEeccCCCcccCCcceEEEEEC-CEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCC----Cc----------
Q 045821           93 TRRSWKMIHELPARTLRRKGMGFEVLG-KNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMS----TA----------  157 (352)
Q Consensus        93 ~~~~w~~~~~~~~~~~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~----~~----------  157 (352)
                      ...+|+.++..+..  +.....+..++ +.+++.|..       ..+++-+-.-.+|+.+...+    ..          
T Consensus       164 gG~tW~~~~~~~~~--p~~~~~i~~~~~~~~~ivg~~-------G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~  234 (398)
T PLN00033        164 GGETWERIPLSPKL--PGEPVLIKATGPKSAEMVTDE-------GAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGA  234 (398)
T ss_pred             CCCCceECccccCC--CCCceEEEEECCCceEEEecc-------ceEEEECCCCCCceEccccccccccccccccccccc
Confidence            57899888653211  11223334443 457777631       23444443445798762111    00          


Q ss_pred             ----ceeeeeEEE-CCEEEEEeCCCCCCceEE-EeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEE
Q 045821          158 ----RCYFPCGVL-NQKIYCIGGLGDTHSWDV-YDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALV  231 (352)
Q Consensus       158 ----r~~~~~~~~-~~~iyv~gG~~~~~~v~~-yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~  231 (352)
                          -..+.+... ++.++++|-..   .+++ .|.....|+.+...............++.++++|...      .+..
T Consensus       235 ~~y~Gsf~~v~~~~dG~~~~vg~~G---~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G------~l~~  305 (398)
T PLN00033        235 SYYTGTFSTVNRSPDGDYVAVSSRG---NFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGG------GLYV  305 (398)
T ss_pred             ceeccceeeEEEcCCCCEEEEECCc---cEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCc------eEEE
Confidence                011122222 45566665432   2222 3333345998875444443333445688899885332      2333


Q ss_pred             EeCCCC-----ceeecCCCCCCC-CCCcEEEECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEE-eCC
Q 045821          232 YEPSTD-----SWLHADANMASG-WRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVA-IGK  304 (352)
Q Consensus       232 yd~~~~-----~W~~~~~~~~~~-~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~~  304 (352)
                      -+....     +|.+++...... ........++.+++.|...  .+.+-....++|+.....+. .....+.+.. .++
T Consensus       306 S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G--~v~~s~D~G~tW~~~~~~~~-~~~~ly~v~f~~~~  382 (398)
T PLN00033        306 SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSG--ILLRSTDGGKSWKRDKGADN-IAANLYSVKFFDDK  382 (398)
T ss_pred             ecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCC--cEEEeCCCCcceeEccccCC-CCcceeEEEEcCCC
Confidence            333334     455543321111 1111223466788777643  56777778899999763221 1223345553 457


Q ss_pred             EEEEEcCC
Q 045821          305 TIFVIGKG  312 (352)
Q Consensus       305 ~i~v~gG~  312 (352)
                      +.|+.|-.
T Consensus       383 ~g~~~G~~  390 (398)
T PLN00033        383 KGFVLGND  390 (398)
T ss_pred             ceEEEeCC
Confidence            89998844

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=92.33  E-value=0.058  Score=46.68  Aligned_cols=43  Identities=23%  Similarity=0.216  Sum_probs=37.6

Q ss_pred             cCCCcHHHHHHhhccCcc-----ccchhhhhhhhhhcccccChhhHHH
Q 045821           18 ISGLPDDIALFCLARVPR-----RYHAVLKCVSSRWRGLLHSEEWCAY   60 (352)
Q Consensus        18 ~~~lp~dl~~~il~r~p~-----~~~~~l~~v~k~W~~l~~s~~~~~~   60 (352)
                      +..||+|++.+|+.++=.     +++.++.+||+.|.-....|++.+.
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~  154 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL  154 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence            468999999999998775     7899999999999999888887654

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=92.06  E-value=5.1  Score=31.82  Aligned_cols=80  Identities=15%  Similarity=0.196  Sum_probs=49.3

Q ss_pred             EEECCEEEEEccCCCCCCceEEEEEeCCCCce-eecCCCCCCCCCCcE----EEECCEEEEEecCC-C--CeEEEEe---
Q 045821          208 FVMDGKIYIRCSASAATSHVCALVYEPSTDSW-LHADANMASGWRGPA----VVVDDALYVLDQSS-G--TKLMMWQ---  276 (352)
Q Consensus       208 ~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W-~~~~~~~~~~~~~~~----~~~~~~l~~~gg~~-~--~~v~~yd---  276 (352)
                      +.++|.+|-++..........|.+||..+.+. ..++.|.........    ++.++.|.++-... .  -+||+-+   
T Consensus         2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~~   81 (164)
T PF07734_consen    2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKYG   81 (164)
T ss_pred             EEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeeec
Confidence            57899999986554433333799999999999 666554333311121    23477888774322 1  3566554   


Q ss_pred             CCCCceEEccC
Q 045821          277 KESREWSPVGR  287 (352)
Q Consensus       277 ~~~~~W~~~~~  287 (352)
                      ....+|+++-.
T Consensus        82 ~~~~SWtK~~~   92 (164)
T PF07734_consen   82 YGKESWTKLFT   92 (164)
T ss_pred             cCcceEEEEEE
Confidence            23678998853

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=91.97  E-value=8.3  Score=35.11  Aligned_cols=132  Identities=8%  Similarity=0.080  Sum_probs=73.9

Q ss_pred             CCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecC-----CCCc--ccceeEEEECCEEEEE
Q 045821          145 MNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTE-----PNIF--TEIEDSFVMDGKIYIR  217 (352)
Q Consensus       145 t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~-----~~~~--~~~~~~~~~~g~iyv~  217 (352)
                      -++|+.+..  .....-.++.++|++|++.-.   ..++.++.+-. =.++.+     +...  ......+...|.|+++
T Consensus       189 ~~~Wt~l~~--~~~~~~DIi~~kGkfYAvD~~---G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV  262 (373)
T PLN03215        189 GNVLKALKQ--MGYHFSDIIVHKGQTYALDSI---GIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIV  262 (373)
T ss_pred             CCeeeEccC--CCceeeEEEEECCEEEEEcCC---CeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEE
Confidence            389999974  223355678889999998432   34666664321 112221     1001  1223456677889988


Q ss_pred             ccCCCCC--------------CceEEEEEeCCCCceeecCCCCCCCC-----CCcEE-------EECCEEEEEecCCCCe
Q 045821          218 CSASAAT--------------SHVCALVYEPSTDSWLHADANMASGW-----RGPAV-------VVDDALYVLDQSSGTK  271 (352)
Q Consensus       218 GG~~~~~--------------~~~~i~~yd~~~~~W~~~~~~~~~~~-----~~~~~-------~~~~~l~~~gg~~~~~  271 (352)
                      .......              ....++..|....+|.++........     ....+       ..+|.||++...   .
T Consensus       263 ~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd~---~  339 (373)
T PLN03215        263 ERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTEDT---M  339 (373)
T ss_pred             EEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEECCC---c
Confidence            6532110              11266677888999999876322110     00001       125677877554   5


Q ss_pred             EEEEeCCCCceEEc
Q 045821          272 LMMWQKESREWSPV  285 (352)
Q Consensus       272 v~~yd~~~~~W~~~  285 (352)
                      ..+||++.++-+.+
T Consensus       340 ~~v~~~~dg~~~~~  353 (373)
T PLN03215        340 PKVFKLDNGNGSSI  353 (373)
T ss_pred             ceEEECCCCCccce
Confidence            67888887764444

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=91.70  E-value=9  Score=33.90  Aligned_cols=217  Identities=12%  Similarity=0.221  Sum_probs=97.3

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-CCEEEEEeCCCCCCCCCCeEEEEECCCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-GKNAYLLGGCGWSEDATSEVYCYDASMN  146 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~  146 (352)
                      ++..+++|..    .. ++.-.-  ...+|++++....  .+-..+.+..+ ++.+.+++..       ..+++=.=.-.
T Consensus        71 ~~~g~ivG~~----g~-ll~T~D--gG~tW~~v~l~~~--lpgs~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~  134 (302)
T PF14870_consen   71 GNEGWIVGEP----GL-LLHTTD--GGKTWERVPLSSK--LPGSPFGITALGDGSAELAGDR-------GAIYRTTDGGK  134 (302)
T ss_dssp             TTEEEEEEET----TE-EEEESS--TTSS-EE----TT---SS-EEEEEEEETTEEEEEETT---------EEEESSTTS
T ss_pred             CCceEEEcCC----ce-EEEecC--CCCCcEEeecCCC--CCCCeeEEEEcCCCcEEEEcCC-------CcEEEeCCCCC
Confidence            5567776532    12 222222  6889999863211  12223344444 5667777642       33444333345


Q ss_pred             eeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCC
Q 045821          147 TWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATS  225 (352)
Q Consensus       147 ~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~  225 (352)
                      +|+.+..-... .-..+... ++++.+++...  +-....|+....|+........+-......-++.|+++. ..+   
T Consensus       135 tW~~~~~~~~g-s~~~~~r~~dG~~vavs~~G--~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg---  207 (302)
T PF14870_consen  135 TWQAVVSETSG-SINDITRSSDGRYVAVSSRG--NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGG---  207 (302)
T ss_dssp             SEEEEE-S-----EEEEEE-TTS-EEEEETTS--SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTT---
T ss_pred             CeeEcccCCcc-eeEeEEECCCCcEEEEECcc--cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCc---
Confidence            79887543222 22222333 56766666443  334466888888998875434333334444578888874 221   


Q ss_pred             ceEEEEEe--CCCCceeecCCCCCCCCCC-cEE--EECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEE
Q 045821          226 HVCALVYE--PSTDSWLHADANMASGWRG-PAV--VVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLV  300 (352)
Q Consensus       226 ~~~i~~yd--~~~~~W~~~~~~~~~~~~~-~~~--~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~  300 (352)
                        .+..-+  ....+|++-..+......+ ..+  .-++.+++.||..  .+++=.-..++|++....... +...+.++
T Consensus       208 --~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G--~l~~S~DgGktW~~~~~~~~~-~~n~~~i~  282 (302)
T PF14870_consen  208 --QIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG--TLLVSTDGGKTWQKDRVGENV-PSNLYRIV  282 (302)
T ss_dssp             --EEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT---EEEESSTTSS-EE-GGGTTS-SS---EEE
T ss_pred             --EEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc--cEEEeCCCCccceECccccCC-CCceEEEE
Confidence              233333  3456788733323222222 222  2368899988864  577777778999998754321 23334444


Q ss_pred             E-eCCEEEEEcCC
Q 045821          301 A-IGKTIFVIGKG  312 (352)
Q Consensus       301 ~-~~~~i~v~gG~  312 (352)
                      . ..++-+++|..
T Consensus       283 f~~~~~gf~lG~~  295 (302)
T PF14870_consen  283 FVNPDKGFVLGQD  295 (302)
T ss_dssp             EEETTEEEEE-ST
T ss_pred             EcCCCceEEECCC
Confidence            4 45799999854

>PTZ00421 coronin; Provisional

Probab=91.69  E-value=13  Score=35.59  Aligned_cols=152  Identities=10%  Similarity=0.036  Sum_probs=71.8

Q ss_pred             CEEEEEeCCCCCCCCCCeEEEEECCCCeeE-ecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEE-EecC
Q 045821          120 KNAYLLGGCGWSEDATSEVYCYDASMNTWT-DAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWK-LHTE  197 (352)
Q Consensus       120 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~-~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~-~~~~  197 (352)
                      +.+++.||.+      ..+.+||..+++-. .+.....+ .......-++.+++.|+.+  ..+.+||+.+..-. .+..
T Consensus       138 ~~iLaSgs~D------gtVrIWDl~tg~~~~~l~~h~~~-V~sla~spdG~lLatgs~D--g~IrIwD~rsg~~v~tl~~  208 (493)
T PTZ00421        138 MNVLASAGAD------MVVNVWDVERGKAVEVIKCHSDQ-ITSLEWNLDGSLLCTTSKD--KKLNIIDPRDGTIVSSVEA  208 (493)
T ss_pred             CCEEEEEeCC------CEEEEEECCCCeEEEEEcCCCCc-eEEEEEECCCCEEEEecCC--CEEEEEECCCCcEEEEEec
Confidence            3466666543      45788898876532 22211111 1111112267777777765  67889999876521 1111


Q ss_pred             CCCcccceeEEEEC-CEEEEEccCCCCCCceEEEEEeCCCCc--eeecCCCCCCCCCCcE-E--EECCEEEEEecCCCCe
Q 045821          198 PNIFTEIEDSFVMD-GKIYIRCSASAATSHVCALVYEPSTDS--WLHADANMASGWRGPA-V--VVDDALYVLDQSSGTK  271 (352)
Q Consensus       198 ~~~~~~~~~~~~~~-g~iyv~GG~~~~~~~~~i~~yd~~~~~--W~~~~~~~~~~~~~~~-~--~~~~~l~~~gg~~~~~  271 (352)
                      .............+ +.|... |... .....+..||..+..  ......  . ...... .  ..++.++++||.....
T Consensus       209 H~~~~~~~~~w~~~~~~ivt~-G~s~-s~Dr~VklWDlr~~~~p~~~~~~--d-~~~~~~~~~~d~d~~~L~lggkgDg~  283 (493)
T PTZ00421        209 HASAKSQRCLWAKRKDLIITL-GCSK-SQQRQIMLWDTRKMASPYSTVDL--D-QSSALFIPFFDEDTNLLYIGSKGEGN  283 (493)
T ss_pred             CCCCcceEEEEcCCCCeEEEE-ecCC-CCCCeEEEEeCCCCCCceeEecc--C-CCCceEEEEEcCCCCEEEEEEeCCCe
Confidence            11111111111223 344444 4321 112257777875432  111110  0 001111 1  2256666666643348


Q ss_pred             EEEEeCCCCceEEc
Q 045821          272 LMMWQKESREWSPV  285 (352)
Q Consensus       272 v~~yd~~~~~W~~~  285 (352)
                      |..||..++.....
T Consensus       284 Iriwdl~~~~~~~~  297 (493)
T PTZ00421        284 IRCFELMNERLTFC  297 (493)
T ss_pred             EEEEEeeCCceEEE
Confidence            99999988776544

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=91.40  E-value=10  Score=33.88  Aligned_cols=141  Identities=17%  Similarity=0.191  Sum_probs=78.4

Q ss_pred             CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccc--eeEEEECCEEEEEccCCCCCCceEEEEEeC--CCCceeec
Q 045821          167 NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEI--EDSFVMDGKIYIRCSASAATSHVCALVYEP--STDSWLHA  242 (352)
Q Consensus       167 ~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~--~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~--~~~~W~~~  242 (352)
                      +..+.+.||.+  ...+.++..+..|---  ++.....  +..+.++|.+..-|+..+     .+.++..  ...+|...
T Consensus        75 ~~~l~aTGGgD--D~AflW~~~~ge~~~e--ltgHKDSVt~~~FshdgtlLATGdmsG-----~v~v~~~stg~~~~~~~  145 (399)
T KOG0296|consen   75 NNNLVATGGGD--DLAFLWDISTGEFAGE--LTGHKDSVTCCSFSHDGTLLATGDMSG-----KVLVFKVSTGGEQWKLD  145 (399)
T ss_pred             CCceEEecCCC--ceEEEEEccCCcceeE--ecCCCCceEEEEEccCceEEEecCCCc-----cEEEEEcccCceEEEee
Confidence            56777778866  6778899999886432  2222222  244667899888887664     3555544  44567654


Q ss_pred             CCCC---CCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEcCCce-EEEE
Q 045821          243 DANM---ASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCS-AVVI  318 (352)
Q Consensus       243 ~~~~---~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~-~~~~  318 (352)
                      ...-   --.||.     ...+++.|..++ .+|.|...++.-.++-  +.......++-+..+||-.+.|-.+. +.++
T Consensus       146 ~e~~dieWl~WHp-----~a~illAG~~DG-svWmw~ip~~~~~kv~--~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~W  217 (399)
T KOG0296|consen  146 QEVEDIEWLKWHP-----RAHILLAGSTDG-SVWMWQIPSQALCKVM--SGHNSPCTCGEFIPDGKRILTGYDDGTIIVW  217 (399)
T ss_pred             cccCceEEEEecc-----cccEEEeecCCC-cEEEEECCCcceeeEe--cCCCCCcccccccCCCceEEEEecCceEEEE
Confidence            2110   011111     345677777666 8999988875433332  11112333344444566555554443 3346


Q ss_pred             EcCCcc
Q 045821          319 DVGNIG  324 (352)
Q Consensus       319 d~~~~~  324 (352)
                      ++++-+
T Consensus       218 n~ktg~  223 (399)
T KOG0296|consen  218 NPKTGQ  223 (399)
T ss_pred             ecCCCc
Confidence            666543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=91.29  E-value=12  Score=34.69  Aligned_cols=164  Identities=13%  Similarity=0.098  Sum_probs=85.6

Q ss_pred             hhhHHHHhhCCCC-CCEEEEEEecCCCCceeEEEecCCCCCCCeeEecc-CCCc-ccCCcceE--------EEEECC-EE
Q 045821           55 EEWCAYRRKHNLD-ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHE-LPAR-TLRRKGMG--------FEVLGK-NA  122 (352)
Q Consensus        55 ~~~~~~~~~~~~~-~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~-~~~~-~~~~~~~~--------~~~~~~-~i  122 (352)
                      ..|...-.++... +.+|...-|.      .+|.|||  .+.+.+++.- +|.. ......+.        .+..+| .|
T Consensus       264 TnFtdYY~R~~nsDGkrIvFq~~G------dIylydP--~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~i  335 (668)
T COG4946         264 TNFTDYYPRNANSDGKRIVFQNAG------DIYLYDP--ETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYI  335 (668)
T ss_pred             CCchhccccccCCCCcEEEEecCC------cEEEeCC--CcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEE
Confidence            3444444455544 4444443222      6889999  8888877752 2311 00000000        122333 33


Q ss_pred             EEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcc
Q 045821          123 YLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFT  202 (352)
Q Consensus       123 yv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~  202 (352)
                      -++.        ...++++++..+--..++.-..-|+.+  ...++.-.++|-.+. ..+.+||..+..-+++.. +...
T Consensus       336 a~VS--------RGkaFi~~~~~~~~iqv~~~~~VrY~r--~~~~~e~~vigt~dg-D~l~iyd~~~~e~kr~e~-~lg~  403 (668)
T COG4946         336 ALVS--------RGKAFIMRPWDGYSIQVGKKGGVRYRR--IQVDPEGDVIGTNDG-DKLGIYDKDGGEVKRIEK-DLGN  403 (668)
T ss_pred             EEEe--------cCcEEEECCCCCeeEEcCCCCceEEEE--EccCCcceEEeccCC-ceEEEEecCCceEEEeeC-Cccc
Confidence            3321        234566666554333343322223333  223445667776554 688999999998777652 3333


Q ss_pred             cceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecC
Q 045821          203 EIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHAD  243 (352)
Q Consensus       203 ~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~  243 (352)
                      -....+.-+|+..+++     +....+|.+|..++.=+.+.
T Consensus       404 I~av~vs~dGK~~vva-----Ndr~el~vididngnv~~id  439 (668)
T COG4946         404 IEAVKVSPDGKKVVVA-----NDRFELWVIDIDNGNVRLID  439 (668)
T ss_pred             eEEEEEcCCCcEEEEE-----cCceEEEEEEecCCCeeEec
Confidence            3333344466755553     23346888898888777664

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=91.21  E-value=8.4  Score=32.63  Aligned_cols=165  Identities=12%  Similarity=0.107  Sum_probs=78.0

Q ss_pred             CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeE--EEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCC
Q 045821          167 NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDS--FVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADA  244 (352)
Q Consensus       167 ~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~--~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~  244 (352)
                      +++..+.+|.   ..|-.||..++.=..+...-.......+  +-.+|+-...||.++     .+-++|...-.-++.  
T Consensus        51 dk~~LAaa~~---qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg-----t~kIWdlR~~~~qR~--  120 (311)
T KOG0315|consen   51 DKKDLAAAGN---QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG-----TVKIWDLRSLSCQRN--  120 (311)
T ss_pred             CcchhhhccC---CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc-----eEEEEeccCcccchh--
Confidence            4444555554   5688999998742111111111111222  234788777765543     344555544222111  


Q ss_pred             CCCCCC-CCcEEEECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEE-EeCCEEEEE-cCCceEEEEEcC
Q 045821          245 NMASGW-RGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLV-AIGKTIFVI-GKGCSAVVIDVG  321 (352)
Q Consensus       245 ~~~~~~-~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~i~v~-gG~~~~~~~d~~  321 (352)
                       ..... ....+..-++--++.|..+..|+++|..++..+...-....  ....++. ..+++.++. ...-++++.+.-
T Consensus       121 -~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~--~~i~sl~v~~dgsml~a~nnkG~cyvW~l~  197 (311)
T KOG0315|consen  121 -YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD--TSIQSLTVMPDGSMLAAANNKGNCYVWRLL  197 (311)
T ss_pred             -ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC--cceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence             11110 01112222333333333333899999999988765422221  2222233 334544433 323357777776


Q ss_pred             CcccccceEEeccCCCCCCCC-cceee
Q 045821          322 NIGNIGGIMVSSSIPKLNDND-DIISC  347 (352)
Q Consensus       322 ~~~w~~~~~~~~~~~~~~~~~-~~~~~  347 (352)
                      .   ....+...-+.++.++. +|-.|
T Consensus       198 ~---~~~~s~l~P~~k~~ah~~~il~C  221 (311)
T KOG0315|consen  198 N---HQTASELEPVHKFQAHNGHILRC  221 (311)
T ss_pred             C---CCccccceEhhheecccceEEEE
Confidence            6   23344455566677666 44443

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=91.17  E-value=6.5  Score=31.24  Aligned_cols=78  Identities=13%  Similarity=0.108  Sum_probs=48.8

Q ss_pred             EEECCEEEEEeCCCCC-C--ceEEEeCCCCcE-EEecCCCCcccce---eE-EEECCEEEEEccCCCCCCceEEEEEe--
Q 045821          164 GVLNQKIYCIGGLGDT-H--SWDVYDPRTNNW-KLHTEPNIFTEIE---DS-FVMDGKIYIRCSASAATSHVCALVYE--  233 (352)
Q Consensus       164 ~~~~~~iyv~gG~~~~-~--~v~~yd~~t~~W-~~~~~~~~~~~~~---~~-~~~~g~iyv~GG~~~~~~~~~i~~yd--  233 (352)
                      +.++|.+|.++..... .  .+..||..+++. +.++.|.......   .. ++.++.|-++-- ........||+-+  
T Consensus         2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~-~~~~~~~~IWvm~~~   80 (164)
T PF07734_consen    2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQ-CDETSKIEIWVMKKY   80 (164)
T ss_pred             EEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEe-ccCCccEEEEEEeee
Confidence            5679999998876554 2  689999999999 6665433333111   22 333778888732 2222234677655  


Q ss_pred             -CCCCceeec
Q 045821          234 -PSTDSWLHA  242 (352)
Q Consensus       234 -~~~~~W~~~  242 (352)
                       ....+|+++
T Consensus        81 ~~~~~SWtK~   90 (164)
T PF07734_consen   81 GYGKESWTKL   90 (164)
T ss_pred             ccCcceEEEE
Confidence             247899876

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=91.14  E-value=13  Score=34.73  Aligned_cols=183  Identities=11%  Similarity=0.019  Sum_probs=90.5

Q ss_pred             CceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECC-EEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcce
Q 045821           81 ERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGK-NAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARC  159 (352)
Q Consensus        81 ~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~  159 (352)
                      +...++.+|.  .++.-..+...+.    .........++ .|++....+    ...++|.+|..++..+.+..-.....
T Consensus       218 ~~~~I~~~dl--~~g~~~~l~~~~g----~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~d~~~~~~~~lt~~~~~~~  287 (427)
T PRK02889        218 KKPVVYVHDL--ATGRRRVVANFKG----SNSAPAWSPDGRTLAVALSRD----GNSQIYTVNADGSGLRRLTQSSGIDT  287 (427)
T ss_pred             CCcEEEEEEC--CCCCEEEeecCCC----CccceEECCCCCEEEEEEccC----CCceEEEEECCCCCcEECCCCCCCCc
Confidence            3456888888  7776555554431    11112222244 455443322    24688999988777666643221111


Q ss_pred             eeeeEEECC-EEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCc
Q 045821          160 YFPCGVLNQ-KIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDS  238 (352)
Q Consensus       160 ~~~~~~~~~-~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~  238 (352)
                      .. ...-++ .|+..+.......++.+|..++..+.+... ..........-+|+..++.....  ....++.+|..+++
T Consensus       288 ~~-~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~s~~~--g~~~I~v~d~~~g~  363 (427)
T PRK02889        288 EP-FFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT-GSYNTSPRISPDGKLLAYISRVG--GAFKLYVQDLATGQ  363 (427)
T ss_pred             Ce-EEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecC-CCCcCceEECCCCCEEEEEEccC--CcEEEEEEECCCCC
Confidence            11 111244 455443322226788888887777776521 11111122333554333323221  22368889998888


Q ss_pred             eeecCCCCCCCCCCcEEEECCEEEEEec-CCC-CeEEEEeCCC
Q 045821          239 WLHADANMASGWRGPAVVVDDALYVLDQ-SSG-TKLMMWQKES  279 (352)
Q Consensus       239 W~~~~~~~~~~~~~~~~~~~~~l~~~gg-~~~-~~v~~yd~~~  279 (352)
                      .+.+....  ........-+++.+++.. ..+ ..++.++...
T Consensus       364 ~~~lt~~~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g  404 (427)
T PRK02889        364 VTALTDTT--RDESPSFAPNGRYILYATQQGGRSVLAAVSSDG  404 (427)
T ss_pred             eEEccCCC--CccCceECCCCCEEEEEEecCCCEEEEEEECCC
Confidence            77764321  112233444555444433 222 3567777754

>PTZ00420 coronin; Provisional

Probab=90.90  E-value=16  Score=35.45  Aligned_cols=141  Identities=12%  Similarity=0.144  Sum_probs=68.0

Q ss_pred             EEEEEeCCCCCCceEEEeCCCCcEE-EecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCcee-ecCCCC
Q 045821          169 KIYCIGGLGDTHSWDVYDPRTNNWK-LHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWL-HADANM  246 (352)
Q Consensus       169 ~iyv~gG~~~~~~v~~yd~~t~~W~-~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~-~~~~~~  246 (352)
                      .+++.+|.+  ..+.+||..+.+=. .+. .+ ......+...+|.+++.++.++     .+..||+.+.+=. .+.. .
T Consensus       139 ~iLaSgS~D--gtIrIWDl~tg~~~~~i~-~~-~~V~SlswspdG~lLat~s~D~-----~IrIwD~Rsg~~i~tl~g-H  208 (568)
T PTZ00420        139 YIMCSSGFD--SFVNIWDIENEKRAFQIN-MP-KKLSSLKWNIKGNLLSGTCVGK-----HMHIIDPRKQEIASSFHI-H  208 (568)
T ss_pred             eEEEEEeCC--CeEEEEECCCCcEEEEEe-cC-CcEEEEEECCCCCEEEEEecCC-----EEEEEECCCCcEEEEEec-c
Confidence            455566655  67889999876511 111 11 1111122234778777755432     5888898765422 1211 1


Q ss_pred             CCCCCCcEEE-----ECCEEEEEecCCC---CeEEEEeCCC-CceEEccCCCCCcCCCCceEE----EeCCEEEEEcCCc
Q 045821          247 ASGWRGPAVV-----VDDALYVLDQSSG---TKLMMWQKES-REWSPVGRLSTLLTRPPCKLV----AIGKTIFVIGKGC  313 (352)
Q Consensus       247 ~~~~~~~~~~-----~~~~l~~~gg~~~---~~v~~yd~~~-~~W~~~~~~~~~~~~~~~~~~----~~~~~i~v~gG~~  313 (352)
                      ........+.     .++..++.+|.++   ..+.+||..+ ..-...-.+..    ....+.    ...+.+|+.|..+
T Consensus       209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~----~~~~L~p~~D~~tg~l~lsGkGD  284 (568)
T PTZ00420        209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN----ASAPLIPHYDESTGLIYLIGKGD  284 (568)
T ss_pred             cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC----CccceEEeeeCCCCCEEEEEECC
Confidence            1100011111     2445555556543   3699999874 22111111111    111111    2247788888444


Q ss_pred             -eEEEEEcCCc
Q 045821          314 -SAVVIDVGNI  323 (352)
Q Consensus       314 -~~~~~d~~~~  323 (352)
                       .+.+|++...
T Consensus       285 ~tIr~~e~~~~  295 (568)
T PTZ00420        285 GNCRYYQHSLG  295 (568)
T ss_pred             CeEEEEEccCC
Confidence             4668887654

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.84  E-value=14  Score=34.36  Aligned_cols=161  Identities=11%  Similarity=0.082  Sum_probs=86.2

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCC-----CCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEE
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTR-----RSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYD  142 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~-----~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d  142 (352)
                      +.+|++.-..... ...++.+|.  ..     ..|..+.+-.    .-..+.+...++.+|+....+   .....+..++
T Consensus       238 ~~~l~i~~~~~~~-~s~v~~~d~--~~~~~~~~~~~~l~~~~----~~~~~~v~~~~~~~yi~Tn~~---a~~~~l~~~~  307 (414)
T PF02897_consen  238 GRYLFISSSSGTS-ESEVYLLDL--DDGGSPDAKPKLLSPRE----DGVEYYVDHHGDRLYILTNDD---APNGRLVAVD  307 (414)
T ss_dssp             SSEEEEEEESSSS-EEEEEEEEC--CCTTTSS-SEEEEEESS----SS-EEEEEEETTEEEEEE-TT----TT-EEEEEE
T ss_pred             ccEEEEEEEcccc-CCeEEEEec--cccCCCcCCcEEEeCCC----CceEEEEEccCCEEEEeeCCC---CCCcEEEEec
Confidence            4555554333222 466777887  54     3777776532    122334455588999887633   3356788888


Q ss_pred             CCCCe---eE-ecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCC-CCcEEEecCCCCcccceeEEE--E-CCEE
Q 045821          143 ASMNT---WT-DAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPR-TNNWKLHTEPNIFTEIEDSFV--M-DGKI  214 (352)
Q Consensus       143 ~~t~~---W~-~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~-t~~W~~~~~~~~~~~~~~~~~--~-~g~i  214 (352)
                      .....   |. .+.+-.....--.+...++.+++..-.+....+.+||.. +..-..++ ++.... .....  . .+.+
T Consensus       308 l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~-~p~~g~-v~~~~~~~~~~~~  385 (414)
T PF02897_consen  308 LADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIP-LPEAGS-VSGVSGDFDSDEL  385 (414)
T ss_dssp             TTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEE-SSSSSE-EEEEES-TT-SEE
T ss_pred             ccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeec-CCcceE-EeccCCCCCCCEE
Confidence            87665   65 444322223444555568887776544333788999998 44434444 222221 11111  1 3344


Q ss_pred             EEEccCCCCCCceEEEEEeCCCCceeec
Q 045821          215 YIRCSASAATSHVCALVYEPSTDSWLHA  242 (352)
Q Consensus       215 yv~GG~~~~~~~~~i~~yd~~~~~W~~~  242 (352)
                      ++.-.  +-.....++.||+.+++.+.+
T Consensus       386 ~~~~s--s~~~P~~~y~~d~~t~~~~~~  411 (414)
T PF02897_consen  386 RFSYS--SFTTPPTVYRYDLATGELTLL  411 (414)
T ss_dssp             EEEEE--ETTEEEEEEEEETTTTCEEEE
T ss_pred             EEEEe--CCCCCCEEEEEECCCCCEEEE
Confidence            44311  112233899999999987654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=90.78  E-value=13  Score=33.99  Aligned_cols=156  Identities=16%  Similarity=0.134  Sum_probs=87.4

Q ss_pred             eEEECCEEEEEeCCCCCCceEEEeCCCCc--EEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCC--CCc
Q 045821          163 CGVLNQKIYCIGGLGDTHSWDVYDPRTNN--WKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPS--TDS  238 (352)
Q Consensus       163 ~~~~~~~iyv~gG~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~--~~~  238 (352)
                      .+..++++|+....   ..+..+|+.+..  |+.................+|+||+- ...+     .+++||..  +..
T Consensus        64 ~~~~dg~v~~~~~~---G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g-~~~g-----~~y~ld~~~G~~~  134 (370)
T COG1520          64 PADGDGTVYVGTRD---GNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVG-SWDG-----KLYALDASTGTLV  134 (370)
T ss_pred             cEeeCCeEEEecCC---CcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEe-cccc-----eEEEEECCCCcEE
Confidence            36678999997221   468999999886  97654220112222334448998885 3322     68899984  456


Q ss_pred             eeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCc--eEEccCCCCCcCCCCceEEEeCCEEEEEcC--Cce
Q 045821          239 WLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESRE--WSPVGRLSTLLTRPPCKLVAIGKTIFVIGK--GCS  314 (352)
Q Consensus       239 W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG--~~~  314 (352)
                      |+.-.... ..+....+..++.+|+.. ..+ .++.+|.++.+  |+.-...+ ...+.......-++.+|+-..  ...
T Consensus       135 W~~~~~~~-~~~~~~~v~~~~~v~~~s-~~g-~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~vy~~~~~~~~~  210 (370)
T COG1520         135 WSRNVGGS-PYYASPPVVGDGTVYVGT-DDG-HLYALNADTGTLKWTYETPAP-LSLSIYGSPAIASGTVYVGSDGYDGI  210 (370)
T ss_pred             EEEecCCC-eEEecCcEEcCcEEEEec-CCC-eEEEEEccCCcEEEEEecCCc-cccccccCceeecceEEEecCCCcce
Confidence            88654331 233344455666766654 222 78888887544  76332221 111222223355677777644  234


Q ss_pred             EEEEEcCCcc--cccceEE
Q 045821          315 AVVIDVGNIG--NIGGIMV  331 (352)
Q Consensus       315 ~~~~d~~~~~--w~~~~~~  331 (352)
                      .+.+|++..+  |+.....
T Consensus       211 ~~a~~~~~G~~~w~~~~~~  229 (370)
T COG1520         211 LYALNAEDGTLKWSQKVSQ  229 (370)
T ss_pred             EEEEEccCCcEeeeeeeec
Confidence            5668876544  6643333

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=90.77  E-value=12  Score=33.50  Aligned_cols=147  Identities=12%  Similarity=0.170  Sum_probs=75.8

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCC--cEEEec
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTN--NWKLHT  196 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~--~W~~~~  196 (352)
                      ++.+.+.||.+.      ..+.++..++.|-..-.-...-.......+++.+.+.|+.+  ..+.++...++  +|....
T Consensus        75 ~~~l~aTGGgDD------~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdms--G~v~v~~~stg~~~~~~~~  146 (399)
T KOG0296|consen   75 NNNLVATGGGDD------LAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMS--GKVLVFKVSTGGEQWKLDQ  146 (399)
T ss_pred             CCceEEecCCCc------eEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCC--ccEEEEEcccCceEEEeec
Confidence            566777787543      46788888877432211111112223334577777777766  56666666655  465431


Q ss_pred             CCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEe
Q 045821          197 EPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQ  276 (352)
Q Consensus       197 ~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd  276 (352)
                      ....-..  ..-.-.+.|+++|..++     .+|.|...+..=.++-.-...+-...-+.-+||..+.|-.++ .+.+||
T Consensus       147 e~~dieW--l~WHp~a~illAG~~DG-----svWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg-ti~~Wn  218 (399)
T KOG0296|consen  147 EVEDIEW--LKWHPRAHILLAGSTDG-----SVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDG-TIIVWN  218 (399)
T ss_pred             ccCceEE--EEecccccEEEeecCCC-----cEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCc-eEEEEe
Confidence            1111000  00001345677754332     578887766433332111111111111344677777765555 899999


Q ss_pred             CCCCc
Q 045821          277 KESRE  281 (352)
Q Consensus       277 ~~~~~  281 (352)
                      +++.+
T Consensus       219 ~ktg~  223 (399)
T KOG0296|consen  219 PKTGQ  223 (399)
T ss_pred             cCCCc
Confidence            99875

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=90.61  E-value=7.6  Score=33.78  Aligned_cols=132  Identities=11%  Similarity=0.048  Sum_probs=69.1

Q ss_pred             CceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECC
Q 045821          180 HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDD  259 (352)
Q Consensus       180 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~  259 (352)
                      .++-.||..++.=+..  ......--.+++.+..-.+.||.++     .+-.||..+..=..+...-..-+. ..-....
T Consensus        35 gslrlYdv~~~~l~~~--~~~~~plL~c~F~d~~~~~~G~~dg-----~vr~~Dln~~~~~~igth~~~i~c-i~~~~~~  106 (323)
T KOG1036|consen   35 GSLRLYDVPANSLKLK--FKHGAPLLDCAFADESTIVTGGLDG-----QVRRYDLNTGNEDQIGTHDEGIRC-IEYSYEV  106 (323)
T ss_pred             CcEEEEeccchhhhhh--eecCCceeeeeccCCceEEEeccCc-----eEEEEEecCCcceeeccCCCceEE-EEeeccC
Confidence            5677888887732111  1111111123344444344455553     588999988877666542111100 0011234


Q ss_pred             EEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEcCCceEEEEEcCCcc
Q 045821          260 ALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCSAVVIDVGNIG  324 (352)
Q Consensus       260 ~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~d~~~~~  324 (352)
                      ..++.||.++ .+-.+|+...+    ..........-+++.+.++.|+|-+-..++.+||..+..
T Consensus       107 ~~vIsgsWD~-~ik~wD~R~~~----~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~  166 (323)
T KOG1036|consen  107 GCVISGSWDK-TIKFWDPRNKV----VVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLD  166 (323)
T ss_pred             CeEEEcccCc-cEEEEeccccc----cccccccCceEEEEeccCCEEEEeecCceEEEEEccccc
Confidence            4566777776 89999998622    111111133456666666666654444467789976543

>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]

Probab=90.54  E-value=6.9  Score=33.76  Aligned_cols=244  Identities=14%  Similarity=0.146  Sum_probs=123.9

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCe
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNT  147 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~  147 (352)
                      +.+.+++|+.   .  .+..-|-  ...+|.+.....   .....++....+.+-++.|       ..+.++.=+-.-.+
T Consensus        54 g~~gwlVg~r---g--tiletdd--~g~tw~qal~~~---gr~~f~sv~f~~~egw~vG-------e~sqll~T~DgGqs  116 (339)
T COG4447          54 GSHGWLVGGR---G--TILETDD--GGITWAQALDFL---GRHAFHSVSFLGMEGWIVG-------EPSQLLHTTDGGQS  116 (339)
T ss_pred             CcceEEEcCc---c--eEEEecC--Ccccchhhhchh---hhhheeeeeeecccccccC-------CcceEEEecCCCcc
Confidence            6778888764   1  2232344  678898775443   1222333333343333333       12344444444557


Q ss_pred             eEecCCC-CCcceeeeeEEECC-EEEEEeCCCCCCceEEEeCCCCcEEEecCCCCc--ccceeEEEECCEEEEEccCCCC
Q 045821          148 WTDAAPM-STARCYFPCGVLNQ-KIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIF--TEIEDSFVMDGKIYIRCSASAA  223 (352)
Q Consensus       148 W~~~~~~-~~~r~~~~~~~~~~-~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~--~~~~~~~~~~g~iyv~GG~~~~  223 (352)
                      |.+++.- ..+-...+...++. +-|++|-+.   .++.=+-.-+.|+.+.+-...  .-...+.+.+|...++|-..  
T Consensus       117 WARi~~~e~~eg~~~sI~f~d~q~g~m~gd~G---ail~T~DgGk~Wk~l~e~~v~~~~~n~ia~s~dng~vaVg~rG--  191 (339)
T COG4447         117 WARIPLSEKLEGFPDSITFLDDQRGEMLGDQG---AILKTTDGGKNWKALVEKAVGLAVPNEIARSADNGYVAVGARG--  191 (339)
T ss_pred             hhhchhhcCCCCCcceeEEecchhhhhhcccc---eEEEecCCcccHhHhcccccchhhhhhhhhhccCCeEEEecCc--
Confidence            9888743 23333344555543 445555432   233333334579887642222  22333455667766664222  


Q ss_pred             CCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECC--EEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEE-
Q 045821          224 TSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDD--ALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLV-  300 (352)
Q Consensus       224 ~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~--~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-  300 (352)
                         +..-..+.....|..-.....++...+....++  -++..|+..  ..+..+...+.|+.++.... ..+...++. 
T Consensus       192 ---s~f~T~~aGqt~~~~~g~~s~~~letmg~adag~~g~la~g~qg--~~f~~~~~gD~wsd~~~~~~-~g~~~~Gl~d  265 (339)
T COG4447         192 ---SFFSTWGAGQTVWLPHGRNSSRRLETMGLADAGSKGLLARGGQG--DQFSWVCGGDEWSDQGEPVN-LGRRSWGLLD  265 (339)
T ss_pred             ---ceEecCCCCccEEeccCCCccchhcccccccCCccceEEEcccc--ceeecCCCcccccccccchh-cccCCCcccc
Confidence               111123333444444333222333333344444  355556543  57778888999998863322 223333222 


Q ss_pred             ---EeCCEEEEEcCCceEEEEEcCCcccccceEEeccCCCCC
Q 045821          301 ---AIGKTIFVIGKGCSAVVIDVGNIGNIGGIMVSSSIPKLN  339 (352)
Q Consensus       301 ---~~~~~i~v~gG~~~~~~~d~~~~~w~~~~~~~~~~~~~~  339 (352)
                         ...+.+||.|..-+++.---.-.+|.++.-+..++-.++
T Consensus       266 ~a~~a~~~v~v~G~gGnvl~StdgG~t~skd~g~~er~s~l~  307 (339)
T COG4447         266 FAPRAPPEVWVSGIGGNVLASTDGGTTWSKDGGVEERVSNLY  307 (339)
T ss_pred             ccccCCCCeEEeccCccEEEecCCCeeEeccCChhhhhhhhh
Confidence               236789998876667765566667887665554444333

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=89.97  E-value=24  Score=35.77  Aligned_cols=35  Identities=14%  Similarity=0.171  Sum_probs=25.3

Q ss_pred             eeeeEEECCEEEEEeCCCCCCceEEEeCCCC--cEEEecC
Q 045821          160 YFPCGVLNQKIYCIGGLGDTHSWDVYDPRTN--NWKLHTE  197 (352)
Q Consensus       160 ~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~--~W~~~~~  197 (352)
                      ....+++++.+|+....   ..++.+|..|+  .|+.-+.
T Consensus       187 e~TPlvvgg~lYv~t~~---~~V~ALDa~TGk~lW~~d~~  223 (764)
T TIGR03074       187 QATPLKVGDTLYLCTPH---NKVIALDAATGKEKWKFDPK  223 (764)
T ss_pred             ccCCEEECCEEEEECCC---CeEEEEECCCCcEEEEEcCC
Confidence            35567789999998654   56888888876  4876543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=89.76  E-value=16  Score=33.41  Aligned_cols=153  Identities=15%  Similarity=0.170  Sum_probs=85.3

Q ss_pred             EEECCEEEEEeCCCCCCCCCCeEEEEECCCCe--eEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCC--c
Q 045821          116 EVLGKNAYLLGGCGWSEDATSEVYCYDASMNT--WTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTN--N  191 (352)
Q Consensus       116 ~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~--~  191 (352)
                      +..++.+|+...       ...++.+|+.+.+  |+................-+|+||+-...   ..+++||..+.  .
T Consensus        65 ~~~dg~v~~~~~-------~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~---g~~y~ld~~~G~~~  134 (370)
T COG1520          65 ADGDGTVYVGTR-------DGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWD---GKLYALDASTGTLV  134 (370)
T ss_pred             EeeCCeEEEecC-------CCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEeccc---ceEEEEECCCCcEE
Confidence            666888998611       2278999999887  86543320111111112227887775542   25889999644  5


Q ss_pred             EEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCC--CceeecCCC-CCCCCCCcEEEECCEEEEEecCC
Q 045821          192 WKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPST--DSWLHADAN-MASGWRGPAVVVDDALYVLDQSS  268 (352)
Q Consensus       192 W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~--~~W~~~~~~-~~~~~~~~~~~~~~~l~~~gg~~  268 (352)
                      |+.-..- ........++.++.+|+..      ....++++|..+  ..|+.-... ......+.....++.+|+.....
T Consensus       135 W~~~~~~-~~~~~~~~v~~~~~v~~~s------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~  207 (370)
T COG1520         135 WSRNVGG-SPYYASPPVVGDGTVYVGT------DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGY  207 (370)
T ss_pred             EEEecCC-CeEEecCcEEcCcEEEEec------CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCC
Confidence            8765433 1222234556677888762      112577777764  458744322 22233333335566666653310


Q ss_pred             CCeEEEEeCCCCc--eEEc
Q 045821          269 GTKLMMWQKESRE--WSPV  285 (352)
Q Consensus       269 ~~~v~~yd~~~~~--W~~~  285 (352)
                      ...++.+|+++++  |++.
T Consensus       208 ~~~~~a~~~~~G~~~w~~~  226 (370)
T COG1520         208 DGILYALNAEDGTLKWSQK  226 (370)
T ss_pred             cceEEEEEccCCcEeeeee
Confidence            2269999997654  7753

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=89.33  E-value=12  Score=31.66  Aligned_cols=177  Identities=10%  Similarity=0.109  Sum_probs=89.7

Q ss_pred             CeEEEEECCCCeeEecCCCCCcceeeeeEE--ECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE--C
Q 045821          136 SEVYCYDASMNTWTDAAPMSTARCYFPCGV--LNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM--D  211 (352)
Q Consensus       136 ~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~  211 (352)
                      ..+-.||..++.=..+...-..+..-.++.  .+|+....||.+  ..+-++|...-.-.+.-..+. . -..++..  +
T Consensus        61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD--gt~kIWdlR~~~~qR~~~~~s-p-Vn~vvlhpnQ  136 (311)
T KOG0315|consen   61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED--GTVKIWDLRSLSCQRNYQHNS-P-VNTVVLHPNQ  136 (311)
T ss_pred             CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC--ceEEEEeccCcccchhccCCC-C-cceEEecCCc
Confidence            567889998874222222222223333333  378888888866  566777777633332211111 1 1123333  3


Q ss_pred             CEEEEEccCCCCCCceEEEEEeCCCCceeecCCCC-CCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCce-EEccCCC
Q 045821          212 GKIYIRCSASAATSHVCALVYEPSTDSWLHADANM-ASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREW-SPVGRLS  289 (352)
Q Consensus       212 g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~-~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W-~~~~~~~  289 (352)
                      +.|++  |.+    ...|+++|+.++.......+- .......++.-+|+.++.+...| ..++++.-+.+- +++..+.
T Consensus       137 teLis--~dq----sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG-~cyvW~l~~~~~~s~l~P~~  209 (311)
T KOG0315|consen  137 TELIS--GDQ----SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKG-NCYVWRLLNHQTASELEPVH  209 (311)
T ss_pred             ceEEe--ecC----CCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCc-cEEEEEccCCCccccceEhh
Confidence            34443  222    235999999999876553322 22223334555777555544444 778887765432 2222222


Q ss_pred             CCcCCCCc---eEEEeCCEEEEEcCCce-EEEEEcCCc
Q 045821          290 TLLTRPPC---KLVAIGKTIFVIGKGCS-AVVIDVGNI  323 (352)
Q Consensus       290 ~~~~~~~~---~~~~~~~~i~v~gG~~~-~~~~d~~~~  323 (352)
                      ....+..+   +....++|.++..+.++ +.|+..+.+
T Consensus       210 k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  210 KFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             heecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence            21122232   23344677666666554 446666655

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.22  E-value=13  Score=31.55  Aligned_cols=103  Identities=19%  Similarity=0.402  Sum_probs=52.5

Q ss_pred             EEEEEeCCCCCCceEEEeCCCCcEEEecC----------------CCCcccceeEEEECCEEEEEccCCCCCCceEEEEE
Q 045821          169 KIYCIGGLGDTHSWDVYDPRTNNWKLHTE----------------PNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVY  232 (352)
Q Consensus       169 ~iyv~gG~~~~~~v~~yd~~t~~W~~~~~----------------~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~y  232 (352)
                      +-++.||++  +.|-+++...++|..-..                ...++...+++.-++++++.             .-
T Consensus       176 krlvSgGcD--n~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw-------------t~  240 (299)
T KOG1332|consen  176 KRLVSGGCD--NLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW-------------TK  240 (299)
T ss_pred             ceeeccCCc--cceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE-------------Ee
Confidence            457888888  455555555557753221                11122222344445555444             44


Q ss_pred             eCCCCceeec--CCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCC-CCceEEccCC
Q 045821          233 EPSTDSWLHA--DANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKE-SREWSPVGRL  288 (352)
Q Consensus       233 d~~~~~W~~~--~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~-~~~W~~~~~~  288 (352)
                      +...+.|+..  ...+...++..--..++.|-+-||.+  .+.+|-.. .++|.+++..
T Consensus       241 ~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN--kvtlwke~~~Gkw~~v~~~  297 (299)
T KOG1332|consen  241 DEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN--KVTLWKENVDGKWEEVGEV  297 (299)
T ss_pred             cCccCcccccccccCCcceEEEEEeccccEEEEecCCc--EEEEEEeCCCCcEEEcccc
Confidence            4556778643  33233333322223344555555544  66666555 4599998754

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=89.04  E-value=28  Score=35.28  Aligned_cols=35  Identities=20%  Similarity=0.295  Sum_probs=24.4

Q ss_pred             eEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCe--eEecCCC
Q 045821          113 MGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNT--WTDAAPM  154 (352)
Q Consensus       113 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~  154 (352)
                      .+-.++++.+|+...       .+.++.+|..|++  |+.-+..
T Consensus       188 ~TPlvvgg~lYv~t~-------~~~V~ALDa~TGk~lW~~d~~~  224 (764)
T TIGR03074       188 ATPLKVGDTLYLCTP-------HNKVIALDAATGKEKWKFDPKL  224 (764)
T ss_pred             cCCEEECCEEEEECC-------CCeEEEEECCCCcEEEEEcCCC
Confidence            445667999999843       3568888888775  7765543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=88.78  E-value=22  Score=33.68  Aligned_cols=146  Identities=11%  Similarity=0.100  Sum_probs=72.1

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEE---Ee
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWK---LH  195 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~---~~  195 (352)
                      .+.+++.|+.+      ..+.++|..+.+-...-.............-++..++.+.++  ..+.+||..+..-+   .+
T Consensus       257 ~g~~i~Sgs~D------~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d--~~i~vwd~~~~~~~~~~~~  328 (456)
T KOG0266|consen  257 DGNLLVSGSDD------GTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD--GTIRVWDLETGSKLCLKLL  328 (456)
T ss_pred             CCCEEEEecCC------CcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC--ccEEEEECCCCceeeeecc
Confidence            44677777653      458888998855333222222222222333367777777664  78899999988743   22


Q ss_pred             cCCCCcccceeEEEE-CCEEEEEccCCCCCCceEEEEEeCCCCc----eeecCCCCCCCCCCcEEEECCEEEEEecCCCC
Q 045821          196 TEPNIFTEIEDSFVM-DGKIYIRCSASAATSHVCALVYEPSTDS----WLHADANMASGWRGPAVVVDDALYVLDQSSGT  270 (352)
Q Consensus       196 ~~~~~~~~~~~~~~~-~g~iyv~GG~~~~~~~~~i~~yd~~~~~----W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~  270 (352)
                      ...........+... +++..+.+..+     ..+-.+|.....    |...... ...........++++.+.|...+ 
T Consensus       329 ~~~~~~~~~~~~~fsp~~~~ll~~~~d-----~~~~~w~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~sg~~d~-  401 (456)
T KOG0266|consen  329 SGAENSAPVTSVQFSPNGKYLLSASLD-----RTLKLWDLRSGKSVGTYTGHSNL-VRCIFSPTLSTGGKLIYSGSEDG-  401 (456)
T ss_pred             cCCCCCCceeEEEECCCCcEEEEecCC-----CeEEEEEccCCcceeeecccCCc-ceeEecccccCCCCeEEEEeCCc-
Confidence            211111111222332 44444443222     124444444332    2222111 00111111234666666666555 


Q ss_pred             eEEEEeCCC
Q 045821          271 KLMMWQKES  279 (352)
Q Consensus       271 ~v~~yd~~~  279 (352)
                      .|..||+.+
T Consensus       402 ~v~~~~~~s  410 (456)
T KOG0266|consen  402 SVYVWDSSS  410 (456)
T ss_pred             eEEEEeCCc
Confidence            899999987

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=88.38  E-value=21  Score=33.08  Aligned_cols=147  Identities=12%  Similarity=0.104  Sum_probs=83.0

Q ss_pred             CCeEEEEECCCC-----eeEecCCCCCcceeeeeEEECCEEEEEeCCCCC-CceEEEeCCCCc---EE-EecCCCCcccc
Q 045821          135 TSEVYCYDASMN-----TWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDT-HSWDVYDPRTNN---WK-LHTEPNIFTEI  204 (352)
Q Consensus       135 ~~~~~~~d~~t~-----~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~-~~v~~yd~~t~~---W~-~~~~~~~~~~~  204 (352)
                      .++++..|....     .|..+..-. .-....+...++.+|+....... ..+..++..+..   |. .+.+.......
T Consensus       251 ~s~v~~~d~~~~~~~~~~~~~l~~~~-~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l  329 (414)
T PF02897_consen  251 ESEVYLLDLDDGGSPDAKPKLLSPRE-DGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSL  329 (414)
T ss_dssp             EEEEEEEECCCTTTSS-SEEEEEESS-SS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEE
T ss_pred             CCeEEEEeccccCCCcCCcEEEeCCC-CceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeE
Confidence            378999999875     677775422 22333344458899998875544 788888888665   66 44433333344


Q ss_pred             eeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEE---ECCEEE-EEecCCC-CeEEEEeCCC
Q 045821          205 EDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVV---VDDALY-VLDQSSG-TKLMMWQKES  279 (352)
Q Consensus       205 ~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~---~~~~l~-~~gg~~~-~~v~~yd~~~  279 (352)
                      ..+...++.|++.. ..  +....+.++|+. ..|.....+.+.........   .++.++ .+.+... ..++.||+.+
T Consensus       330 ~~~~~~~~~Lvl~~-~~--~~~~~l~v~~~~-~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t  405 (414)
T PF02897_consen  330 EDVSLFKDYLVLSY-RE--NGSSRLRVYDLD-DGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLAT  405 (414)
T ss_dssp             EEEEEETTEEEEEE-EE--TTEEEEEEEETT--TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTT
T ss_pred             EEEEEECCEEEEEE-EE--CCccEEEEEECC-CCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence            55666788888873 22  334478889988 33433322222211111111   133443 4455443 5899999999


Q ss_pred             CceEEcc
Q 045821          280 REWSPVG  286 (352)
Q Consensus       280 ~~W~~~~  286 (352)
                      ++.+.+.
T Consensus       406 ~~~~~~k  412 (414)
T PF02897_consen  406 GELTLLK  412 (414)
T ss_dssp             TCEEEEE
T ss_pred             CCEEEEE
Confidence            9877653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=88.08  E-value=17  Score=31.72  Aligned_cols=101  Identities=8%  Similarity=-0.012  Sum_probs=53.5

Q ss_pred             eEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeee
Q 045821           84 CCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPC  163 (352)
Q Consensus        84 ~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~  163 (352)
                      .+..||.  ..++-.+.-...   ..-.....-.......+.+-.    ....++...+..+|+.-+.-+-...+...-.
T Consensus        37 sl~LYd~--~~g~~~~ti~sk---kyG~~~~~Fth~~~~~i~sSt----k~d~tIryLsl~dNkylRYF~GH~~~V~sL~  107 (311)
T KOG1446|consen   37 SLRLYDS--LSGKQVKTINSK---KYGVDLACFTHHSNTVIHSST----KEDDTIRYLSLHDNKYLRYFPGHKKRVNSLS  107 (311)
T ss_pred             eEEEEEc--CCCceeeEeecc---cccccEEEEecCCceEEEccC----CCCCceEEEEeecCceEEEcCCCCceEEEEE
Confidence            4566788  776655444333   111112222223333333322    2346778888888887554332333332222


Q ss_pred             EEECCEEEEEeCCCCCCceEEEeCCCCcEEEe
Q 045821          164 GVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLH  195 (352)
Q Consensus       164 ~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~  195 (352)
                      +.=.+..|+-++.+  ..+..+|..+...+-+
T Consensus       108 ~sP~~d~FlS~S~D--~tvrLWDlR~~~cqg~  137 (311)
T KOG1446|consen  108 VSPKDDTFLSSSLD--KTVRLWDLRVKKCQGL  137 (311)
T ss_pred             ecCCCCeEEecccC--CeEEeeEecCCCCceE
Confidence            22234778888876  6788888887665543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=87.98  E-value=25  Score=33.54  Aligned_cols=162  Identities=12%  Similarity=0.152  Sum_probs=79.7

Q ss_pred             CCeEEEEECCCCe--eEecCCCCC---cceee--eeE---EECCE---EEEEeCCCCCCceEEEeCCCCc--EEEecCCC
Q 045821          135 TSEVYCYDASMNT--WTDAAPMST---ARCYF--PCG---VLNQK---IYCIGGLGDTHSWDVYDPRTNN--WKLHTEPN  199 (352)
Q Consensus       135 ~~~~~~~d~~t~~--W~~~~~~~~---~r~~~--~~~---~~~~~---iyv~gG~~~~~~v~~yd~~t~~--W~~~~~~~  199 (352)
                      .+.++.+|..+++  |+.-...+.   -+...  ...   .+++.   +.++|..+  ..++.+|..+.+  |+.-... 
T Consensus       255 ~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~--G~l~ald~~tG~~~W~~~~~~-  331 (488)
T cd00216         255 TDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKN--GFFYVLDRTTGKLISARPEVE-  331 (488)
T ss_pred             eeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCC--ceEEEEECCCCcEeeEeEeec-
Confidence            4579999999886  874321110   01111  111   12332   33334333  568999999875  8753210 


Q ss_pred             CcccceeEEEECCEEEEEccCCC------------CCCceEEEEEeCCCC--ceeecCCCC-------CCCCCCcEEEEC
Q 045821          200 IFTEIEDSFVMDGKIYIRCSASA------------ATSHVCALVYEPSTD--SWLHADANM-------ASGWRGPAVVVD  258 (352)
Q Consensus       200 ~~~~~~~~~~~~g~iyv~GG~~~------------~~~~~~i~~yd~~~~--~W~~~~~~~-------~~~~~~~~~~~~  258 (352)
                           .....-.+.+|+-.....            ......+.++|..+.  .|+.-....       ........+..+
T Consensus       332 -----~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g  406 (488)
T cd00216         332 -----QPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAG  406 (488)
T ss_pred             -----cccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecC
Confidence                 001111266666421100            011236888888765  487642200       011122233445


Q ss_pred             CEEEEEecCCCCeEEEEeCCCCc--eEEccCCCCCcCCCCceEEEeCCEEEEE
Q 045821          259 DALYVLDQSSGTKLMMWQKESRE--WSPVGRLSTLLTRPPCKLVAIGKTIFVI  309 (352)
Q Consensus       259 ~~l~~~gg~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~i~v~  309 (352)
                      +.|| +|..++ .++.+|.++++  |+.  .++.. ..........++++||.
T Consensus       407 ~~v~-~g~~dG-~l~ald~~tG~~lW~~--~~~~~-~~a~P~~~~~~g~~yv~  454 (488)
T cd00216         407 NLVF-AGAADG-YFRAFDATTGKELWKF--RTPSG-IQATPMTYEVNGKQYVG  454 (488)
T ss_pred             CeEE-EECCCC-eEEEEECCCCceeeEE--ECCCC-ceEcCEEEEeCCEEEEE
Confidence            5544 454455 89999998765  763  23321 12222333558999986

The alignment model contains an 8-bladed beta-propeller.

>PRK01742 tolB translocation protein TolB; Provisional

Probab=87.23  E-value=26  Score=32.81  Aligned_cols=180  Identities=9%  Similarity=0.003  Sum_probs=86.1

Q ss_pred             ceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCE-EEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCccee
Q 045821           82 RVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKN-AYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCY  160 (352)
Q Consensus        82 ~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~  160 (352)
                      ...++.+|.  .++.-..+...+.    .........+++ |++....++    ..++|.+|..+++.+.+..-...-..
T Consensus       227 ~~~i~i~dl--~tg~~~~l~~~~g----~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~~~~  296 (429)
T PRK01742        227 KSQLVVHDL--RSGARKVVASFRG----HNGAPAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQLTSGAGNNTE  296 (429)
T ss_pred             CcEEEEEeC--CCCceEEEecCCC----ccCceeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEeeccCCCCcCC
Confidence            456777888  7766555554431    111122223444 444332222    24688899988876666542211111


Q ss_pred             eeeEEECC-EEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCE-EEEEccCCCCCCceEEEEEeCCCCc
Q 045821          161 FPCGVLNQ-KIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGK-IYIRCSASAATSHVCALVYEPSTDS  238 (352)
Q Consensus       161 ~~~~~~~~-~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~-iyv~GG~~~~~~~~~i~~yd~~~~~  238 (352)
                      . ...-++ .|+..........++.+|..+..-+.+. .  .. ......-+|+ |++.++       ..+..+|..+++
T Consensus       297 ~-~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~-~--~~-~~~~~SpDG~~ia~~~~-------~~i~~~Dl~~g~  364 (429)
T PRK01742        297 P-SWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG-G--RG-YSAQISADGKTLVMING-------DNVVKQDLTSGS  364 (429)
T ss_pred             E-EECCCCCEEEEEECCCCCceEEEEECCCCCeEEec-C--CC-CCccCCCCCCEEEEEcC-------CCEEEEECCCCC
Confidence            1 111244 4554443332256777777655433332 1  11 1222223554 444432       236778999888


Q ss_pred             eeecCCCCCCCCCCcEEEECCEEEEEecCCC-C-eEEEEeCCCCceEEc
Q 045821          239 WLHADANMASGWRGPAVVVDDALYVLDQSSG-T-KLMMWQKESREWSPV  285 (352)
Q Consensus       239 W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~-~-~v~~yd~~~~~W~~~  285 (352)
                      +..+....  ........-+++.++++...+ . .++..+.....=.++
T Consensus       365 ~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l  411 (429)
T PRK01742        365 TEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL  411 (429)
T ss_pred             eEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc
Confidence            87764321  112334455676666655433 2 233445444433334

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=86.72  E-value=17  Score=34.58  Aligned_cols=62  Identities=11%  Similarity=0.247  Sum_probs=38.2

Q ss_pred             CEEEEEccCCCCCCceEEEEEeCCCCceeec-CCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCc
Q 045821          212 GKIYIRCSASAATSHVCALVYEPSTDSWLHA-DANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESRE  281 (352)
Q Consensus       212 g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~-~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~  281 (352)
                      --||+.|...      .++++|+..+.|-.- .... .......+.--..|+.+|+..+ .|..||+.+.+
T Consensus       146 cDly~~gsg~------evYRlNLEqGrfL~P~~~~~-~~lN~v~in~~hgLla~Gt~~g-~VEfwDpR~ks  208 (703)
T KOG2321|consen  146 CDLYLVGSGS------EVYRLNLEQGRFLNPFETDS-GELNVVSINEEHGLLACGTEDG-VVEFWDPRDKS  208 (703)
T ss_pred             ccEEEeecCc------ceEEEEcccccccccccccc-ccceeeeecCccceEEecccCc-eEEEecchhhh
Confidence            3577775333      699999999988542 1111 1111111223456788888777 89999998765

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=86.69  E-value=27  Score=32.55  Aligned_cols=184  Identities=10%  Similarity=0.072  Sum_probs=99.1

Q ss_pred             CCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCC--CceEEEeCCCCcEEEecCCCCcccceeEEEEC
Q 045821          134 ATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDT--HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMD  211 (352)
Q Consensus       134 ~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~--~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~  211 (352)
                      ...++++++...++-+++.-+...-..-+.-.-++.|.|..-...+  +-.+.|-...+-=.. .+++.... .+.+.-+
T Consensus       105 ~taDly~v~~e~Ge~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~-e~LnlGpa-thiv~~d  182 (668)
T COG4946         105 QTADLYVVPSEDGEAKRITYFGRRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKT-EPLNLGPA-THIVIKD  182 (668)
T ss_pred             ccccEEEEeCCCCcEEEEEEeccccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCcee-eeccCCce-eeEEEeC
Confidence            3567888888888877776553221222222236777777654433  233444444332111 11222222 2345557


Q ss_pred             CEEEEEccCCCC----------CCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCC-CeEEEEeCCCC
Q 045821          212 GKIYIRCSASAA----------TSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSG-TKLMMWQKESR  280 (352)
Q Consensus       212 g~iyv~GG~~~~----------~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~-~~v~~yd~~~~  280 (352)
                      |.+++  |.+..          +..-.+|.-.....++.++-+.. ... ..-+.+++++|.+....+ .+++.-|.+.+
T Consensus       183 g~ivi--gRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~-~~v-S~PmIV~~RvYFlsD~eG~GnlYSvdldGk  258 (668)
T COG4946         183 GIIVI--GRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLD-GNV-SSPMIVGERVYFLSDHEGVGNLYSVDLDGK  258 (668)
T ss_pred             CEEEE--ccCcccCcccccccCCccceEEEEecCCcceeeeeecC-CCc-CCceEEcceEEEEecccCccceEEeccCCc
Confidence            75554  33311          11125665544444555553321 111 223567999999987766 57888888887


Q ss_pred             ceEEccCCCCCcCCCCceEEEeCCEEEEEcCCceEEEEEcCCccccc
Q 045821          281 EWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCSAVVIDVGNIGNIG  327 (352)
Q Consensus       281 ~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~d~~~~~w~~  327 (352)
                      --.+..+.....+|+    +.-+++-.||.-.-+.++|||+++.-++
T Consensus       259 DlrrHTnFtdYY~R~----~nsDGkrIvFq~~GdIylydP~td~lek  301 (668)
T COG4946         259 DLRRHTNFTDYYPRN----ANSDGKRIVFQNAGDIYLYDPETDSLEK  301 (668)
T ss_pred             hhhhcCCchhccccc----cCCCCcEEEEecCCcEEEeCCCcCccee
Confidence            766665554322222    2235665555444479999999988665

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=85.06  E-value=24  Score=30.33  Aligned_cols=90  Identities=11%  Similarity=0.027  Sum_probs=55.5

Q ss_pred             CceEEEeCCCC--cEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCC--CceeecCCCCCCCCCCcEE
Q 045821          180 HSWDVYDPRTN--NWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPST--DSWLHADANMASGWRGPAV  255 (352)
Q Consensus       180 ~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~--~~W~~~~~~~~~~~~~~~~  255 (352)
                      ..+..-|+.++  .|+.+-   ..|..+.+.++++. .|+|.+.+     .++..+.++  .-|..+..  ..-...+.+
T Consensus        33 ~~~~avd~~sG~~~We~il---g~RiE~sa~vvgdf-VV~GCy~g-----~lYfl~~~tGs~~w~f~~~--~~vk~~a~~  101 (354)
T KOG4649|consen   33 GIVIAVDPQSGNLIWEAIL---GVRIECSAIVVGDF-VVLGCYSG-----GLYFLCVKTGSQIWNFVIL--ETVKVRAQC  101 (354)
T ss_pred             ceEEEecCCCCcEEeehhh---CceeeeeeEEECCE-EEEEEccC-----cEEEEEecchhheeeeeeh--hhhccceEE
Confidence            56778888877  498864   45556667777777 56655543     244445444  46776532  112233345


Q ss_pred             EECCEEEEEecCCCCeEEEEeCCCCc
Q 045821          256 VVDDALYVLDQSSGTKLMMWQKESRE  281 (352)
Q Consensus       256 ~~~~~l~~~gg~~~~~v~~yd~~~~~  281 (352)
                      ..++.+...|..++ .++..|+.+..
T Consensus       102 d~~~glIycgshd~-~~yalD~~~~~  126 (354)
T KOG4649|consen  102 DFDGGLIYCGSHDG-NFYALDPKTYG  126 (354)
T ss_pred             cCCCceEEEecCCC-cEEEecccccc
Confidence            55677666776666 88888888754

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=84.81  E-value=35  Score=32.09  Aligned_cols=185  Identities=10%  Similarity=0.090  Sum_probs=91.3

Q ss_pred             eEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeee
Q 045821           84 CCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPC  163 (352)
Q Consensus        84 ~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~  163 (352)
                      .++.+++  .++...+...+-+......-.+++..+|.-.+.|-      ....+.+|++.+++...-.. -.+..-++.
T Consensus       223 H~~Fw~~--~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgD------S~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L  293 (626)
T KOG2106|consen  223 HLYFWTL--RGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGD------SGGNILIWSKGTNRISKQVH-AHDGGVFSL  293 (626)
T ss_pred             eEEEEEc--cCCceEEEeeccccccceEEEEEEEcCCCCEEeec------CCceEEEEeCCCceEEeEee-ecCCceEEE
Confidence            4666699  99888777665433233222333333444444443      33468899998887655433 233344666


Q ss_pred             EEEC-CEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccc-eeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceee
Q 045821          164 GVLN-QKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEI-EDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLH  241 (352)
Q Consensus       164 ~~~~-~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~-~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~  241 (352)
                      +.+. |.+.- ||.+  ..+..+|-.-++=+++. +|..... ..++.-.+.||| | ..    .+.+..=..++. .+.
T Consensus       294 ~~lr~GtllS-GgKD--Rki~~Wd~~y~k~r~~e-lPe~~G~iRtv~e~~~di~v-G-Tt----rN~iL~Gt~~~~-f~~  362 (626)
T KOG2106|consen  294 CMLRDGTLLS-GGKD--RKIILWDDNYRKLRETE-LPEQFGPIRTVAEGKGDILV-G-TT----RNFILQGTLENG-FTL  362 (626)
T ss_pred             EEecCccEee-cCcc--ceEEecccccccccccc-CchhcCCeeEEecCCCcEEE-e-ec----cceEEEeeecCC-ceE
Confidence            6664 55555 8876  56677773322222222 2222111 122222334555 2 21    122333222222 221


Q ss_pred             cCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceEEccCCC
Q 045821          242 ADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLS  289 (352)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~  289 (352)
                      +........-+.+......+|+..|..+ .+..|+-..-.|+++-.-|
T Consensus       363 ~v~gh~delwgla~hps~~q~~T~gqdk-~v~lW~~~k~~wt~~~~d~  409 (626)
T KOG2106|consen  363 TVQGHGDELWGLATHPSKNQLLTCGQDK-HVRLWNDHKLEWTKIIEDP  409 (626)
T ss_pred             EEEecccceeeEEcCCChhheeeccCcc-eEEEccCCceeEEEEecCc
Confidence            1110111111222334566777777766 7888886677899886444

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=84.40  E-value=34  Score=31.53  Aligned_cols=119  Identities=9%  Similarity=0.116  Sum_probs=65.5

Q ss_pred             eeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccce-eEEEE-CCEEEEEccCCCCCCceEEEEEeCCC
Q 045821          160 YFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIE-DSFVM-DGKIYIRCSASAATSHVCALVYEPST  236 (352)
Q Consensus       160 ~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~-~~~~~-~g~iyv~GG~~~~~~~~~i~~yd~~~  236 (352)
                      ..+++.. ||.||..|-.+  ..+.+||..+..  .+...|....-- ...+. ||+..+. +.+.    ..+..+|+..
T Consensus       350 ~ts~~fHpDgLifgtgt~d--~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat-~add----~~V~lwDLRK  420 (506)
T KOG0289|consen  350 YTSAAFHPDGLIFGTGTPD--GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLAT-AADD----GSVKLWDLRK  420 (506)
T ss_pred             eEEeeEcCCceEEeccCCC--ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEE-EecC----CeEEEEEehh
Confidence            4444444 78888877655  678889998776  444444422211 22333 4554444 3332    1377788755


Q ss_pred             Cc-eeecCCCCCCCCCCcEEEE--CCEEEEEecCCCCeEEEEeCCCCceEEccCCCC
Q 045821          237 DS-WLHADANMASGWRGPAVVV--DDALYVLDQSSGTKLMMWQKESREWSPVGRLST  290 (352)
Q Consensus       237 ~~-W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~  290 (352)
                      .+ ...+.  .+......++.+  .|..+.++|..= .|+.|+-.+.+|+++..++.
T Consensus       421 l~n~kt~~--l~~~~~v~s~~fD~SGt~L~~~g~~l-~Vy~~~k~~k~W~~~~~~~~  474 (506)
T KOG0289|consen  421 LKNFKTIQ--LDEKKEVNSLSFDQSGTYLGIAGSDL-QVYICKKKTKSWTEIKELAD  474 (506)
T ss_pred             hcccceee--ccccccceeEEEcCCCCeEEeeccee-EEEEEecccccceeeehhhh
Confidence            43 22221  111111122333  456666665432 56777888999999987765

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=84.24  E-value=25  Score=29.94  Aligned_cols=125  Identities=15%  Similarity=0.241  Sum_probs=64.7

Q ss_pred             CCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEE-EeCCCCCCceEEEeCCCCcEEEec--CCCCcccceeEEEE
Q 045821          134 ATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYC-IGGLGDTHSWDVYDPRTNNWKLHT--EPNIFTEIEDSFVM  210 (352)
Q Consensus       134 ~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv-~gG~~~~~~v~~yd~~t~~W~~~~--~~~~~~~~~~~~~~  210 (352)
                      ...++-.+|..|++-..--.++.+-...-.. .+|+|.. .-|    ++|-.+|+.+-.  .+.  .||-... .++..-
T Consensus       163 dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs-~dG~ilTia~g----ssV~Fwdaksf~--~lKs~k~P~nV~-SASL~P  234 (334)
T KOG0278|consen  163 DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVS-QDGRILTIAYG----SSVKFWDAKSFG--LLKSYKMPCNVE-SASLHP  234 (334)
T ss_pred             cCCceEEEEeccCcEEEEEecCCCCcceeec-cCCCEEEEecC----ceeEEecccccc--ceeeccCccccc-cccccC
Confidence            3456777888877643222233332222222 2444443 334    567777776532  332  2222111 112223


Q ss_pred             CCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcE----EEECCEEEEEecCCCCeEEEE
Q 045821          211 DGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPA----VVVDDALYVLDQSSGTKLMMW  275 (352)
Q Consensus       211 ~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~----~~~~~~l~~~gg~~~~~v~~y  275 (352)
                      +..+||.||..     ..++.||..++.=...   .....+++.    ..-+|.+|..|..++ .+..|
T Consensus       235 ~k~~fVaGged-----~~~~kfDy~TgeEi~~---~nkgh~gpVhcVrFSPdGE~yAsGSEDG-TirlW  294 (334)
T KOG0278|consen  235 KKEFFVAGGED-----FKVYKFDYNTGEEIGS---YNKGHFGPVHCVRFSPDGELYASGSEDG-TIRLW  294 (334)
T ss_pred             CCceEEecCcc-----eEEEEEeccCCceeee---cccCCCCceEEEEECCCCceeeccCCCc-eEEEE
Confidence            56899998665     3678888877642221   112222222    345999999998877 55554

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.23  E-value=25  Score=29.87  Aligned_cols=74  Identities=9%  Similarity=0.109  Sum_probs=43.5

Q ss_pred             CcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecC-CCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeC
Q 045821          156 TARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTE-PNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEP  234 (352)
Q Consensus       156 ~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~-~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~  234 (352)
                      .++...+++..++++++.          .-+.+.++|+...- .-+....+.+-.+-|.+..++|.+     +.+..+-.
T Consensus       221 l~~s~iAS~SqDg~viIw----------t~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~Gd-----Nkvtlwke  285 (299)
T KOG1332|consen  221 LPKSTIASCSQDGTVIIW----------TKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGD-----NKVTLWKE  285 (299)
T ss_pred             CCceeeEEecCCCcEEEE----------EecCccCcccccccccCCcceEEEEEeccccEEEEecCC-----cEEEEEEe
Confidence            466777777777776663          34456678875431 112233445556667766665544     24556655


Q ss_pred             C-CCceeecCC
Q 045821          235 S-TDSWLHADA  244 (352)
Q Consensus       235 ~-~~~W~~~~~  244 (352)
                      + .++|.+++.
T Consensus       286 ~~~Gkw~~v~~  296 (299)
T KOG1332|consen  286 NVDGKWEEVGE  296 (299)
T ss_pred             CCCCcEEEccc
Confidence            4 559998854

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=83.43  E-value=31  Score=30.45  Aligned_cols=237  Identities=12%  Similarity=0.060  Sum_probs=120.3

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcc--eEEEEECC-EEEEEeCCCCCCCCCCeEEEEECC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKG--MGFEVLGK-NAYLLGGCGWSEDATSEVYCYDAS  144 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~--~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~d~~  144 (352)
                      ...+.+|+..   ......+||+  .+..-...-..+   ..|+.  |++..-++ .+|..-+..  .....-+-+||..
T Consensus        16 ~~~avafaRR---PG~~~~v~D~--~~g~~~~~~~a~---~gRHFyGHg~fs~dG~~LytTEnd~--~~g~G~IgVyd~~   85 (305)
T PF07433_consen   16 RPEAVAFARR---PGTFALVFDC--RTGQLLQRLWAP---PGRHFYGHGVFSPDGRLLYTTENDY--ETGRGVIGVYDAA   85 (305)
T ss_pred             CCeEEEEEeC---CCcEEEEEEc--CCCceeeEEcCC---CCCEEecCEEEcCCCCEEEEecccc--CCCcEEEEEEECc
Confidence            4566667554   3345667798  777654333333   34544  44444444 566654422  2345667889998


Q ss_pred             CCeeEecCCCCCc-ceeeeeEEE-CC-EEEEE-eCCCCC--------------CceEEEeCCCCcEEEecCCCCc----c
Q 045821          145 MNTWTDAAPMSTA-RCYFPCGVL-NQ-KIYCI-GGLGDT--------------HSWDVYDPRTNNWKLHTEPNIF----T  202 (352)
Q Consensus       145 t~~W~~~~~~~~~-r~~~~~~~~-~~-~iyv~-gG~~~~--------------~~v~~yd~~t~~W~~~~~~~~~----~  202 (352)
                       +...++...+.. .-.|-+... ++ .+.|. ||...+              .++-..|..+.+=..--.+++.    .
T Consensus        86 -~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS  164 (305)
T PF07433_consen   86 -RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS  164 (305)
T ss_pred             -CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence             667777766643 334555554 44 34443 553211              5666677887753222122221    1


Q ss_pred             cceeEEEECCEEEEEccCCCCCCce--EEEEEeCCCCceeecCCCC--CCC--CCCcEEEE--CCEEEEEecCCCCeEEE
Q 045821          203 EIEDSFVMDGKIYIRCSASAATSHV--CALVYEPSTDSWLHADANM--ASG--WRGPAVVV--DDALYVLDQSSGTKLMM  274 (352)
Q Consensus       203 ~~~~~~~~~g~iyv~GG~~~~~~~~--~i~~yd~~~~~W~~~~~~~--~~~--~~~~~~~~--~~~l~~~gg~~~~~v~~  274 (352)
                      -.|.++.-+|.+.+-.-..+.....  -+..++.... -+.+..+.  ...  -+..++.+  ++.++.+..=.++.+.+
T Consensus       165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~  243 (305)
T PF07433_consen  165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV  243 (305)
T ss_pred             eeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence            2233333455555432222221111  3333333221 22222111  111  12223333  44455555444558999


Q ss_pred             EeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEcCCceEEEEEcC
Q 045821          275 WQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCSAVVIDVG  321 (352)
Q Consensus       275 yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~d~~  321 (352)
                      ||..++.|.....++.     .|+++..++...+-.|.-.+...+..
T Consensus       244 ~d~~tg~~~~~~~l~D-----~cGva~~~~~f~~ssG~G~~~~~~~~  285 (305)
T PF07433_consen  244 WDAATGRLLGSVPLPD-----ACGVAPTDDGFLVSSGQGQLIRLSPD  285 (305)
T ss_pred             EECCCCCEeeccccCc-----eeeeeecCCceEEeCCCccEEEccCc
Confidence            9999999988877765     36777777775555565444444433

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=83.23  E-value=46  Score=32.22  Aligned_cols=177  Identities=16%  Similarity=0.159  Sum_probs=94.2

Q ss_pred             CCCeEEEEECCCCeeEecCCCCCccee-eeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECC
Q 045821          134 ATSEVYCYDASMNTWTDAAPMSTARCY-FPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDG  212 (352)
Q Consensus       134 ~~~~~~~~d~~t~~W~~~~~~~~~r~~-~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g  212 (352)
                      ..+.+.++|..+++--.+-.   +... -..+.+++.+.|.|.++  ..|-+||+.+.+.-..  +.......-+..+++
T Consensus       309 ~D~tVkVW~v~n~~~l~l~~---~h~~~V~~v~~~~~~lvsgs~d--~~v~VW~~~~~~cl~s--l~gH~~~V~sl~~~~  381 (537)
T KOG0274|consen  309 RDNTVKVWDVTNGACLNLLR---GHTGPVNCVQLDEPLLVSGSYD--GTVKVWDPRTGKCLKS--LSGHTGRVYSLIVDS  381 (537)
T ss_pred             CCceEEEEeccCcceEEEec---cccccEEEEEecCCEEEEEecC--ceEEEEEhhhceeeee--ecCCcceEEEEEecC
Confidence            34678888888665333221   1111 12333466777777766  5788999997665332  222111112345666


Q ss_pred             -EEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCC
Q 045821          213 -KIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTL  291 (352)
Q Consensus       213 -~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~  291 (352)
                       ..++-|+.+     ..|.++|+.+.. ..+.....+...-....+.+++++-+..++ .+..||.+++.-.++-.-+. 
T Consensus       382 ~~~~~Sgs~D-----~~IkvWdl~~~~-~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~-~Ik~WD~~~~~~~~~~~~~~-  453 (537)
T KOG0274|consen  382 ENRLLSGSLD-----TTIKVWDLRTKR-KCIHTLQGHTSLVSSLLLRDNFLVSSSADG-TIKLWDAEEGECLRTLEGRH-  453 (537)
T ss_pred             cceEEeeeec-----cceEeecCCchh-hhhhhhcCCcccccccccccceeEeccccc-cEEEeecccCceeeeeccCC-
Confidence             666666555     246777776664 211111111111122345666676666665 89999998887765543321 


Q ss_pred             cCCCCceEEEeCCEEEEEcCCc-eEEEEEcCCccccc
Q 045821          292 LTRPPCKLVAIGKTIFVIGKGC-SAVVIDVGNIGNIG  327 (352)
Q Consensus       292 ~~~~~~~~~~~~~~i~v~gG~~-~~~~~d~~~~~w~~  327 (352)
                        ...-.++..+...++..+.+ ...++|.....-.+
T Consensus       454 --~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~  488 (537)
T KOG0274|consen  454 --VGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIR  488 (537)
T ss_pred             --cccEEEeecCcceEEEEecCCeeEEEecccCchhh
Confidence              12222333333455555544 45578888776554

>PRK01742 tolB translocation protein TolB; Provisional

Probab=82.72  E-value=42  Score=31.39  Aligned_cols=139  Identities=12%  Similarity=0.029  Sum_probs=71.3

Q ss_pred             CCeEEEEECCCCeeEecCCCCCcceeeeeEE-ECCE-EEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECC
Q 045821          135 TSEVYCYDASMNTWTDAAPMSTARCYFPCGV-LNQK-IYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDG  212 (352)
Q Consensus       135 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~-~~~~-iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g  212 (352)
                      ...++++|..+++-+.+...+.. . ...+. -+++ |++....+...+++.+|..++..+++..... ........-+|
T Consensus       227 ~~~i~i~dl~tg~~~~l~~~~g~-~-~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~-~~~~~~wSpDG  303 (429)
T PRK01742        227 KSQLVVHDLRSGARKVVASFRGH-N-GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAG-NNTEPSWSPDG  303 (429)
T ss_pred             CcEEEEEeCCCCceEEEecCCCc-c-CceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCC-CcCCEEECCCC
Confidence            35789999988766555544321 1 11121 2454 4443333322567888988887776653211 11122333456


Q ss_pred             E-EEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECC-EEEEEecCCCCeEEEEeCCCCceEEcc
Q 045821          213 K-IYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDD-ALYVLDQSSGTKLMMWQKESREWSPVG  286 (352)
Q Consensus       213 ~-iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~l~~~gg~~~~~v~~yd~~~~~W~~~~  286 (352)
                      + |+.. ...  .....++.++..+..-+.+..  . . ......-++ .|++.++   ..++.+|..++.+..+.
T Consensus       304 ~~i~f~-s~~--~g~~~I~~~~~~~~~~~~l~~--~-~-~~~~~SpDG~~ia~~~~---~~i~~~Dl~~g~~~~lt  369 (429)
T PRK01742        304 QSILFT-SDR--SGSPQVYRMSASGGGASLVGG--R-G-YSAQISADGKTLVMING---DNVVKQDLTSGSTEVLS  369 (429)
T ss_pred             CEEEEE-ECC--CCCceEEEEECCCCCeEEecC--C-C-CCccCCCCCCEEEEEcC---CCEEEEECCCCCeEEec
Confidence            5 4443 221  112367777776554333321  1 1 122233344 4555544   26888999998887664

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=82.68  E-value=36  Score=30.58  Aligned_cols=69  Identities=20%  Similarity=0.327  Sum_probs=37.0

Q ss_pred             CCEEEEEcc---CCCC-CCceEEEEEeCCCCcee-ecCCCCCCCCCCcEEEECCE--EEEEecCCCCeEEEEeCCCCce
Q 045821          211 DGKIYIRCS---ASAA-TSHVCALVYEPSTDSWL-HADANMASGWRGPAVVVDDA--LYVLDQSSGTKLMMWQKESREW  282 (352)
Q Consensus       211 ~g~iyv~GG---~~~~-~~~~~i~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~--l~~~gg~~~~~v~~yd~~~~~W  282 (352)
                      .++|||+-=   ...+ .....||+||+.+.+=. +++-  ....-+..+..+.+  ||.+.+..+ .+.+||..+++-
T Consensus       249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l--~~~~~Si~Vsqd~~P~L~~~~~~~~-~l~v~D~~tGk~  324 (342)
T PF06433_consen  249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL--EHPIDSIAVSQDDKPLLYALSAGDG-TLDVYDAATGKL  324 (342)
T ss_dssp             TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE--EEEESEEEEESSSS-EEEEEETTTT-EEEEEETTT--E
T ss_pred             cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC--CCccceEEEccCCCcEEEEEcCCCC-eEEEEeCcCCcE
Confidence            678998741   1111 12238999999988643 2221  11111233444443  555554333 899999998754

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=82.37  E-value=55  Score=32.50  Aligned_cols=157  Identities=8%  Similarity=0.083  Sum_probs=87.1

Q ss_pred             EEEEC--CEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcE
Q 045821          115 FEVLG--KNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNW  192 (352)
Q Consensus       115 ~~~~~--~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W  192 (352)
                      .+.++  |.-..+|+.     .+..+.+|+-.++++..-.+-..++.....-.-||.+.+.|+.+  ..|-+||..+.-.
T Consensus       312 t~~~N~tGDWiA~g~~-----klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eD--gKVKvWn~~SgfC  384 (893)
T KOG0291|consen  312 TVSFNSTGDWIAFGCS-----KLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAED--GKVKVWNTQSGFC  384 (893)
T ss_pred             EEEecccCCEEEEcCC-----ccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCC--CcEEEEeccCceE
Confidence            34444  555556652     24577888777776654444333333222222378888888866  7888999888754


Q ss_pred             EEecCCCCcccceeE--EEECCEEEEEccCCCCCCceEEEEEeCCCC-ceeecCCCCCCCCCCcEEEECCEEEEEecCCC
Q 045821          193 KLHTEPNIFTEIEDS--FVMDGKIYIRCSASAATSHVCALVYEPSTD-SWLHADANMASGWRGPAVVVDDALYVLDQSSG  269 (352)
Q Consensus       193 ~~~~~~~~~~~~~~~--~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~  269 (352)
                      ...  .........+  +...|+..+.-..++     .+-.+|...- ..+....|-+..+...++-..|.|.+.|+.+.
T Consensus       385 ~vT--FteHts~Vt~v~f~~~g~~llssSLDG-----tVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~  457 (893)
T KOG0291|consen  385 FVT--FTEHTSGVTAVQFTARGNVLLSSSLDG-----TVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDS  457 (893)
T ss_pred             EEE--eccCCCceEEEEEEecCCEEEEeecCC-----eEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccce
Confidence            322  1222222222  223455444423332     3555665433 24444433333333223333499999999887


Q ss_pred             CeEEEEeCCCCceEEc
Q 045821          270 TKLMMWQKESREWSPV  285 (352)
Q Consensus       270 ~~v~~yd~~~~~W~~~  285 (352)
                      -.|++|+.++++--.+
T Consensus       458 F~IfvWS~qTGqllDi  473 (893)
T KOG0291|consen  458 FEIFVWSVQTGQLLDI  473 (893)
T ss_pred             EEEEEEEeecCeeeeh
Confidence            7899999998886544

>PF15525 DUF4652: Domain of unknown function (DUF4652)

Probab=82.18  E-value=25  Score=28.46  Aligned_cols=86  Identities=15%  Similarity=0.078  Sum_probs=48.5

Q ss_pred             CCCCCCCCCCeEEEEECCCCeeEecCCCCCc-ceeeeeEE-E-CCEEEEEeCCCCC-----CceEEEeCCCCcEEEecCC
Q 045821          127 GCGWSEDATSEVYCYDASMNTWTDAAPMSTA-RCYFPCGV-L-NQKIYCIGGLGDT-----HSWDVYDPRTNNWKLHTEP  198 (352)
Q Consensus       127 G~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~-r~~~~~~~-~-~~~iyv~gG~~~~-----~~v~~yd~~t~~W~~~~~~  198 (352)
                      |.++.......+|++|..++.|..+..-+.. .+.+--+. + +..|.|+-|....     ..+++|++.|+.=..+-+.
T Consensus        79 g~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~  158 (200)
T PF15525_consen   79 GPEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEW  158 (200)
T ss_pred             CCccccccceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeec
Confidence            4444456688999999999987655322211 22222222 2 3444444443221     8899999999987777654


Q ss_pred             CCcccceeEEEECC
Q 045821          199 NIFTEIEDSFVMDG  212 (352)
Q Consensus       199 ~~~~~~~~~~~~~g  212 (352)
                      ..-......+...+
T Consensus       159 ~dkkqQVis~e~~g  172 (200)
T PF15525_consen  159 KDKKQQVISAEKNG  172 (200)
T ss_pred             cccceeEEEEEEeC
Confidence            33333333333333

>PRK10115 protease 2; Provisional

Probab=82.17  E-value=59  Score=32.67  Aligned_cols=149  Identities=11%  Similarity=0.012  Sum_probs=77.4

Q ss_pred             CCeEEEEECCCCe--eEecCCCCCcceeeeeEEE-CCEEEEEeCCCCC-CceEEEeC--CCCcEEEecCCCCcccceeEE
Q 045821          135 TSEVYCYDASMNT--WTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDT-HSWDVYDP--RTNNWKLHTEPNIFTEIEDSF  208 (352)
Q Consensus       135 ~~~~~~~d~~t~~--W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~-~~v~~yd~--~t~~W~~~~~~~~~~~~~~~~  208 (352)
                      ..++++++..|..  =..+-.-+........... +++..++...... +.++.|+.  .+..|..+.+.+..... ...
T Consensus       198 ~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~  276 (686)
T PRK10115        198 PYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEY-SLD  276 (686)
T ss_pred             CCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEE-EEE
Confidence            4789999999883  2223221222222222223 4443334443333 77888883  23444433322222222 233


Q ss_pred             EECCEEEEEccCCCCCCceEEEEEeCC-CCceeecCCCCCCCCCCcEEEECCEEEEEecCCC-CeEEEEeCCCCceEEcc
Q 045821          209 VMDGKIYIRCSASAATSHVCALVYEPS-TDSWLHADANMASGWRGPAVVVDDALYVLDQSSG-TKLMMWQKESREWSPVG  286 (352)
Q Consensus       209 ~~~g~iyv~GG~~~~~~~~~i~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~-~~v~~yd~~~~~W~~~~  286 (352)
                      ..++.+|+.--..  .....+...+.. ..+|+.+-+......-......++.|++..-..+ ..++++|..++....+.
T Consensus       277 ~~~~~ly~~tn~~--~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~  354 (686)
T PRK10115        277 HYQHRFYLRSNRH--GKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTREVIGIA  354 (686)
T ss_pred             eCCCEEEEEEcCC--CCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCCCCceEEec
Confidence            4567888874222  223356777776 5789887543221111222345777777765444 46888887766655554

>PLN00181 protein SPA1-RELATED; Provisional

Probab=81.95  E-value=64  Score=32.99  Aligned_cols=143  Identities=10%  Similarity=0.051  Sum_probs=69.0

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCee-EecCCCCCcceeeeeEE--ECCEEEEEeCCCCCCceEEEeCCCCc--EE
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTW-TDAAPMSTARCYFPCGV--LNQKIYCIGGLGDTHSWDVYDPRTNN--WK  193 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W-~~~~~~~~~r~~~~~~~--~~~~iyv~gG~~~~~~v~~yd~~t~~--W~  193 (352)
                      ++.+++.|+.+      ..+.+||..+.+- ..+.. ...  -..+..  -++..++.|+.+  ..+.+||..+..  ..
T Consensus       587 ~~~~L~Sgs~D------g~v~iWd~~~~~~~~~~~~-~~~--v~~v~~~~~~g~~latgs~d--g~I~iwD~~~~~~~~~  655 (793)
T PLN00181        587 DPTLLASGSDD------GSVKLWSINQGVSIGTIKT-KAN--ICCVQFPSESGRSLAFGSAD--HKVYYYDLRNPKLPLC  655 (793)
T ss_pred             CCCEEEEEcCC------CEEEEEECCCCcEEEEEec-CCC--eEEEEEeCCCCCEEEEEeCC--CeEEEEECCCCCccce
Confidence            45666667643      4578888876532 12211 111  111111  146777777755  688999987643  11


Q ss_pred             EecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCC----ceeecCCCCCCCC--CCcEEEECCEEEEEecC
Q 045821          194 LHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTD----SWLHADANMASGW--RGPAVVVDDALYVLDQS  267 (352)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~----~W~~~~~~~~~~~--~~~~~~~~~~l~~~gg~  267 (352)
                      .+..  ....-..+...++..++.|+.++     .+..||....    .|..+.....+..  ....+..++.+++.|+.
T Consensus       656 ~~~~--h~~~V~~v~f~~~~~lvs~s~D~-----~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~  728 (793)
T PLN00181        656 TMIG--HSKTVSYVRFVDSSTLVSSSTDN-----TLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSE  728 (793)
T ss_pred             EecC--CCCCEEEEEEeCCCEEEEEECCC-----EEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC
Confidence            2110  11111123334666666655442     4666776432    2322211111110  11122345666777776


Q ss_pred             CCCeEEEEeCCCC
Q 045821          268 SGTKLMMWQKESR  280 (352)
Q Consensus       268 ~~~~v~~yd~~~~  280 (352)
                      ++ .+.+|+....
T Consensus       729 D~-~v~iw~~~~~  740 (793)
T PLN00181        729 TN-EVFVYHKAFP  740 (793)
T ss_pred             CC-EEEEEECCCC
Confidence            65 8888887643

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.53  E-value=38  Score=30.71  Aligned_cols=151  Identities=13%  Similarity=0.132  Sum_probs=79.8

Q ss_pred             CEEEEEeCCCCCCceEEEeCCCC--cEEEecCCCC------cccceeEEEECC---EEEEEccCCCCCCceEEEEEeCCC
Q 045821          168 QKIYCIGGLGDTHSWDVYDPRTN--NWKLHTEPNI------FTEIEDSFVMDG---KIYIRCSASAATSHVCALVYEPST  236 (352)
Q Consensus       168 ~~iyv~gG~~~~~~v~~yd~~t~--~W~~~~~~~~------~~~~~~~~~~~g---~iyv~GG~~~~~~~~~i~~yd~~~  236 (352)
                      -.|+.+||....+.+.+||.++.  .|+.-..++.      +.....+.++.+   +-++-+-.     .-.+-.||+..
T Consensus       161 p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~-----~hqvR~YDt~~  235 (412)
T KOG3881|consen  161 PYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITR-----YHQVRLYDTRH  235 (412)
T ss_pred             CceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEec-----ceeEEEecCcc
Confidence            36777788654466778887754  5776543222      222334445544   33333211     12577899875


Q ss_pred             CceeecCC-CCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCC-EEEEEcCCce
Q 045821          237 DSWLHADA-NMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGK-TIFVIGKGCS  314 (352)
Q Consensus       237 ~~W~~~~~-~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~i~v~gG~~~  314 (352)
                      +.=-...- .......+.+...++...++|...+ .+..||..++.---.. + .........+..+.+ .+...+|-+.
T Consensus       236 qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g-~l~~FD~r~~kl~g~~-~-kg~tGsirsih~hp~~~~las~GLDR  312 (412)
T KOG3881|consen  236 QRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKG-QLAKFDLRGGKLLGCG-L-KGITGSIRSIHCHPTHPVLASCGLDR  312 (412)
T ss_pred             cCcceeEeccccCcceeeeecCCCcEEEEecccc-hhheecccCceeeccc-c-CCccCCcceEEEcCCCceEEeeccce
Confidence            43211111 1122222333344566666666655 8999998876542221 0 111122234555555 5667777776


Q ss_pred             EE-EEEcCCcccc
Q 045821          315 AV-VIDVGNIGNI  326 (352)
Q Consensus       315 ~~-~~d~~~~~w~  326 (352)
                      .+ |||++++.-.
T Consensus       313 yvRIhD~ktrkll  325 (412)
T KOG3881|consen  313 YVRIHDIKTRKLL  325 (412)
T ss_pred             eEEEeecccchhh
Confidence            55 8999986544

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=81.30  E-value=40  Score=30.16  Aligned_cols=210  Identities=10%  Similarity=0.062  Sum_probs=105.1

Q ss_pred             CEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCC--cEEEe
Q 045821          120 KNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTN--NWKLH  195 (352)
Q Consensus       120 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~--~W~~~  195 (352)
                      ..+|++..-+.  ..--..+.+|+..++-+.+...+.+-..++-+.+  +++..+..-+.. ..+-+|-..++  -|..+
T Consensus        52 ~~LY~v~~~~~--~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~-g~v~v~p~~~dG~l~~~v  128 (346)
T COG2706          52 RHLYVVNEPGE--EGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHS-GSVSVYPLQADGSLQPVV  128 (346)
T ss_pred             CEEEEEEecCC--cCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccC-ceEEEEEcccCCccccce
Confidence            35887754322  2234556778877887777654433333232333  343333333332 66677766554  13222


Q ss_pred             c------CCCCcc---cceeEEE--ECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCC---CcEEEECCE-
Q 045821          196 T------EPNIFT---EIEDSFV--MDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWR---GPAVVVDDA-  260 (352)
Q Consensus       196 ~------~~~~~~---~~~~~~~--~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~---~~~~~~~~~-  260 (352)
                      .      .-|..+   ...+.+.  -++++.+...    -....+..|+...+.-+......-....   +.++--+++ 
T Consensus       129 ~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D----LG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~  204 (346)
T COG2706         129 QVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD----LGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKY  204 (346)
T ss_pred             eeeecCCCCCCccccCCccceeeeCCCCCEEEEee----cCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcE
Confidence            1      111111   1122333  3554444321    2234688888887766554332111112   222333444 


Q ss_pred             EEEEecCCC-CeEEEEeCCCCceEEcc---CCCCCcCCCCc--eEEE--eCCEEEEEc-CCceEEEEEcCCcccccceEE
Q 045821          261 LYVLDQSSG-TKLMMWQKESREWSPVG---RLSTLLTRPPC--KLVA--IGKTIFVIG-KGCSAVVIDVGNIGNIGGIMV  331 (352)
Q Consensus       261 l~~~gg~~~-~~v~~yd~~~~~W~~~~---~~~~~~~~~~~--~~~~--~~~~i~v~g-G~~~~~~~d~~~~~w~~~~~~  331 (352)
                      .|++...++ -.++.||....+.+++.   .+|..+.....  ++..  .+.-+|+-. |.+...+|.+..++=.-....
T Consensus       205 aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~  284 (346)
T COG2706         205 AYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVG  284 (346)
T ss_pred             EEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEE
Confidence            688887766 34567777777777775   56665533322  2222  244577776 455677788887764333444


Q ss_pred             eccCC
Q 045821          332 SSSIP  336 (352)
Q Consensus       332 ~~~~~  336 (352)
                      +....
T Consensus       285 ~~~te  289 (346)
T COG2706         285 ITPTE  289 (346)
T ss_pred             EeccC
Confidence            44433

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=80.28  E-value=46  Score=30.24  Aligned_cols=120  Identities=9%  Similarity=-0.081  Sum_probs=65.4

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCC---CCCCCCCeEEEEECC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCG---WSEDATSEVYCYDAS  144 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~---~~~~~~~~~~~~d~~  144 (352)
                      ..++|+.-.......-..+++|.  .+.+-  +...+.  ..+....+..-+..+|+...+.   ........+.+||+.
T Consensus        12 ~~~v~V~d~~~~~~~~~v~ViD~--~~~~v--~g~i~~--G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~   85 (352)
T TIGR02658        12 ARRVYVLDPGHFAATTQVYTIDG--EAGRV--LGMTDG--GFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ   85 (352)
T ss_pred             CCEEEEECCcccccCceEEEEEC--CCCEE--EEEEEc--cCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence            56688874331111245677788  66443  333332  1222232333355799887632   222346789999999


Q ss_pred             CCeeE-ecCCCCCccee------eeeEEECC-EEEEEeCCCCCCceEEEeCCCCcEEE
Q 045821          145 MNTWT-DAAPMSTARCY------FPCGVLNQ-KIYCIGGLGDTHSWDVYDPRTNNWKL  194 (352)
Q Consensus       145 t~~W~-~~~~~~~~r~~------~~~~~~~~-~iyv~gG~~~~~~v~~yd~~t~~W~~  194 (352)
                      |.+-. +++..+.||..      .....-+| .+||.--. ..+.|-+.|..+++--.
T Consensus        86 t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~-p~~~V~VvD~~~~kvv~  142 (352)
T TIGR02658        86 THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS-PSPAVGVVDLEGKAFVR  142 (352)
T ss_pred             cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC-CCCEEEEEECCCCcEEE
Confidence            98743 44433444421      11222244 57776432 12889999999987543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	352
2xn4_A	302	Crystal Structure Of The Kelch Domain Of Human Klhl		1e-10
2woz_A	318	The Novel Beta-Propeller Of The Btb-Kelch Protein K		2e-10
2vpj_A	301	Crystal Structure Of The Kelch Domain Of Human Klhl		9e-08
1x2j_A	316	Structural Basis For The Defects Of Human Lung Canc		4e-07
1x2j_A	316	Structural Basis For The Defects Of Human Lung Canc		4e-06
2dyh_A	318	Crystal Structure Of The Keap1 Protein In Complexed		5e-07
2dyh_A	318	Crystal Structure Of The Keap1 Protein In Complexed		4e-06
3vng_A	309	Crystal Structure Of Keap1 In Complex With Syntheti		7e-07
3vng_A	309	Crystal Structure Of Keap1 In Complex With Syntheti		2e-05
1u6d_X	308	Crystal Structure Of The Kelch Domain Of Human Keap		8e-07
1u6d_X	308	Crystal Structure Of The Kelch Domain Of Human Keap		2e-05
1zgk_A	308	1.35 Angstrom Structure Of The Kelch Domain Of Keap		2e-05
1zgk_A	308	1.35 Angstrom Structure Of The Kelch Domain Of Keap		3e-05
4asc_A	315	Crystal Structure Of The Kelch Domain Of Human Kbtb		7e-04

>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2 (mayven) Length = 302

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 131 SEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGD---THSWDVYDP 187
           S    S V CY+A+ N WT  A MST R     GVLN  +Y +GG        S +VYDP
Sbjct: 168 SRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDP 227
Query: 188 RTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMA 247
            TN W+   + N+         ++G +Y+      + +      Y P+TD W    + M+
Sbjct: 228 TTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMS 287
Query: 248 SG 249
           +G
Sbjct: 288 TG 289

>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1 Provides The Binding Site For Lasp-1 That Is Necessary For Pseudopodia Extension Length = 318

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 76/173 (43%), Gaps = 20/173 (11%)
Query: 35  RRYHAVLKCVSSRWRGL--LHSEEWCAYRRKHNLDETWIYA---FCRDNKLERVCCYVLD 89
           + Y   L  VSS W GL  L S   C +      D+ ++ A      +  L+ V CY  D
Sbjct: 77  QSYFFQLDNVSSEWVGLPPLPSAR-CLFGLGEVDDKIYVVAGKDLQTEASLDSVLCY--D 133
Query: 90  PNSTRRSWKMIHELPARTLRRKGMGFEVLGKNA--YLLGGCGWSEDATSEVYCYDASMNT 147
           P + +  W  +  LP +       G  V+  N   Y LGG    +  T+ V+ Y+     
Sbjct: 134 PVAAK--WSEVKNLPIKV-----YGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGD 186
Query: 148 WTDAAPMSTARCYFPCGVLNQKIYCIGGL---GDTHSWDVYDPRTNNWKLHTE 197
           W D APM T R  F   +   KI   GG+   G + S + +D +TN W++ TE
Sbjct: 187 WKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTE 239

>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12 Length = 301

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 69/167 (41%), Gaps = 14/167 (8%)
Query: 76  RDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDAT 135
           R   +ER      DPN  +  W M+ ++      R+G G  V     Y LGG     +  
Sbjct: 126 RHTSMER-----YDPNIDQ--WSMLGDMQTA---REGAGLVVASGVIYCLGGYD-GLNIL 174
Query: 136 SEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGL-GDTH--SWDVYDPRTNNW 192
           + V  YD     WT+  PM+T R      +LN  IY +GG  G  H  S + Y+ RT++W
Sbjct: 175 NSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSW 234
Query: 193 KLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSW 239
              T          + V+ G++Y        +       Y+P  DSW
Sbjct: 235 TTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281

>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer Somatic Mutations In The Repression Activity Of Keap1 On Nrf2 Length = 316

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 55/127 (43%), Gaps = 13/127 (10%)
Query: 71  IYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGW 130
           +  F   N+L    CY  +    R  W+MI   P  T+R  G G  VL    Y  GG   
Sbjct: 167 VGGFDGTNRLNSAECYYPE----RNEWRMI--TPMNTIR-SGAGVCVLHNCIYAAGGYD- 218
Query: 131 SEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSW----DVYD 186
            +D  + V  YD    TWT  APM   R      V   KIY +GG  D H++    + YD
Sbjct: 219 GQDQLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGY-DGHTFLDSVECYD 277
Query: 187 PRTNNWK 193
           P ++ W 
Sbjct: 278 PDSDTWS 284

>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer Somatic Mutations In The Repression Activity Of Keap1 On Nrf2 Length = 316

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 60/162 (37%), Gaps = 8/162 (4%)
Query: 94  RRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAP 153
           R  W ++  +     RR G+G  VL +  Y +GG   +    S   CY    N W    P
Sbjct: 139 RDEWHLVAPM---LTRRIGVGVAVLNRLLYAVGGFDGTNRLNS-AECYYPERNEWRMITP 194
Query: 154 MSTARCYFPCGVLNQKIYCIGGL---GDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM 210
           M+T R      VL+  IY  GG       +S + YD  T  W                V 
Sbjct: 195 MNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMRHHRSALGITVH 254
Query: 211 DGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRG 252
            GKIY+       T       Y+P +D+W      M SG  G
Sbjct: 255 QGKIYVLGGYDGHTFLDSVECYDPDSDTWSEV-TRMTSGRSG 295

>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With The N-Terminal Region Of The Nrf2 Transcription Factor Length = 318

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 55/127 (43%), Gaps = 13/127 (10%)
Query: 71  IYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGW 130
           +  F   N+L    CY  +    R  W+MI   P  T+R  G G  VL    Y  GG   
Sbjct: 168 VGGFDGTNRLNSAECYYPE----RNEWRMI--TPMNTIR-SGAGVCVLHNCIYAAGGYD- 219
Query: 131 SEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSW----DVYD 186
            +D  + V  YD    TWT  APM   R      V   KIY +GG  D H++    + YD
Sbjct: 220 GQDQLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGY-DGHTFLDSVECYD 278
Query: 187 PRTNNWK 193
           P ++ W 
Sbjct: 279 PDSDTWS 285

>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With The N-Terminal Region Of The Nrf2 Transcription Factor Length = 318

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 60/162 (37%), Gaps = 8/162 (4%)
Query: 94  RRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAP 153
           R  W ++  +     RR G+G  VL +  Y +GG   +    S   CY    N W    P
Sbjct: 140 RDEWHLVAPM---LTRRIGVGVAVLNRLLYAVGGFDGTNRLNS-AECYYPERNEWRMITP 195
Query: 154 MSTARCYFPCGVLNQKIYCIGGL---GDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM 210
           M+T R      VL+  IY  GG       +S + YD  T  W                V 
Sbjct: 196 MNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMRHHRSALGITVH 255
Query: 211 DGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRG 252
            GKIY+       T       Y+P +D+W      M SG  G
Sbjct: 256 QGKIYVLGGYDGHTFLDSVECYDPDSDTWSEV-TRMTSGRSG 296

>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small Molecular Based On A Co-crystallization Length = 309

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 53/127 (41%), Gaps = 13/127 (10%)
Query: 71  IYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGW 130
           +  F   N+L    CY  +    R  W+MI    A    R G G  VL    Y  GG   
Sbjct: 175 VGGFDGTNRLNSAECYYPE----RNEWRMI---TAMNTIRSGAGVCVLHNCIYAAGGYD- 226
Query: 131 SEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSW----DVYD 186
            +D  + V  YD    TWT  APM   R      V   +IY +GG  D H++    + YD
Sbjct: 227 GQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGY-DGHTFLDSVECYD 285
Query: 187 PRTNNWK 193
           P T+ W 
Sbjct: 286 PDTDTWS 292

>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small Molecular Based On A Co-crystallization Length = 309

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 11/161 (6%)
Query: 86  YVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDA---TSEVYCYD 142
           Y+   N +  +W  + +L    + R G+   V+G   Y +GG   S D    +S + CY+
Sbjct: 41  YLEAYNPSDGTWLRLADL---QVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYN 97
Query: 143 ASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGG-LGDTH--SWDVYDPRTNNWKLHTEPN 199
              N W+  APMS  R     GV++  IY +GG  G  H  S + Y+P  + W L   P 
Sbjct: 98  PMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHL-VAPM 156
Query: 200 IFTEIEDSFVMDGKIYIRCSASAATSHV-CALVYEPSTDSW 239
           +   I     +  ++         T+ +  A  Y P  + W
Sbjct: 157 LTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEW 197

>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1 Length = 308

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 53/127 (41%), Gaps = 13/127 (10%)
Query: 71  IYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGW 130
           +  F   N+L    CY  +    R  W+MI    A    R G G  VL    Y  GG   
Sbjct: 174 VGGFDGTNRLNSAECYYPE----RNEWRMI---TAMNTIRSGAGVCVLHNCIYAAGGYD- 225
Query: 131 SEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSW----DVYD 186
            +D  + V  YD    TWT  APM   R      V   +IY +GG  D H++    + YD
Sbjct: 226 GQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGY-DGHTFLDSVECYD 284
Query: 187 PRTNNWK 193
           P T+ W 
Sbjct: 285 PDTDTWS 291

>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1 Length = 308

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 11/161 (6%)
Query: 86  YVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDA---TSEVYCYD 142
           Y+   N +  +W  + +L    + R G+   V+G   Y +GG   S D    +S + CY+
Sbjct: 40  YLEAYNPSDGTWLRLADL---QVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYN 96
Query: 143 ASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGG-LGDTH--SWDVYDPRTNNWKLHTEPN 199
              N W+  APMS  R     GV++  IY +GG  G  H  S + Y+P  + W L   P 
Sbjct: 97  PMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHL-VAPM 155
Query: 200 IFTEIEDSFVMDGKIYIRCSASAATSHV-CALVYEPSTDSW 239
           +   I     +  ++         T+ +  A  Y P  + W
Sbjct: 156 LTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEW 196

>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1 Length = 308

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 51/127 (40%), Gaps = 13/127 (10%)
Query: 71  IYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGW 130
           +  F   N+L    CY  +    R  W+ I    A    R G G  VL    Y  GG   
Sbjct: 174 VGGFDGTNRLNSAECYYPE----RNEWRXI---TAXNTIRSGAGVCVLHNCIYAAGGYD- 225
Query: 131 SEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSW----DVYD 186
            +D  + V  YD    TWT  AP    R      V   +IY +GG  D H++    + YD
Sbjct: 226 GQDQLNSVERYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGY-DGHTFLDSVECYD 284
Query: 187 PRTNNWK 193
           P T+ W 
Sbjct: 285 PDTDTWS 291

>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1 Length = 308

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 11/161 (6%)
Query: 86  YVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDA---TSEVYCYD 142
           Y+   N +  +W  + +L    + R G+   V+G   Y +GG   S D    +S + CY+
Sbjct: 40  YLEAYNPSNGTWLRLADL---QVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYN 96
Query: 143 ASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGG-LGDTH--SWDVYDPRTNNWKLHTEPN 199
              N W+  AP S  R     GV++  IY +GG  G  H  S + Y+P  + W L   P 
Sbjct: 97  PXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHL-VAPX 155
Query: 200 IFTEIEDSFVMDGKIYIRCSASAATSHV-CALVYEPSTDSW 239
           +   I     +  ++         T+ +  A  Y P  + W
Sbjct: 156 LTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEW 196

>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5 Length = 315

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 122 AYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGD--- 178
            Y++GG G      +++  YD     W + APM TAR  F   V + +I    G+ D   
Sbjct: 151 VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGL 210
Query: 179 THSWDVYDPRTNNW 192
           T S +VY    N W
Sbjct: 211 TSSAEVYSITDNKW 224

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	352
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	2e-29
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	9e-26
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	2e-19
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	4e-29
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	6e-26
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	1e-21
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	6e-09
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	1e-08
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	1e-28
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	7e-24
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	2e-10
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	9e-28
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	2e-27
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	5e-27
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	2e-26
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	3e-15
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	8e-09
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	4e-25
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	2e-11
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	2e-11
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	5e-25
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	1e-20
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	1e-12
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	4e-08
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	2e-05
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	2e-04
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	2e-06
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	7e-04

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score =  113 bits (285), Expect = 2e-29
 Identities = 50/242 (20%), Positives = 86/242 (35%), Gaps = 27/242 (11%)

Query: 84  CCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDA 143
            C   +P     SW  I     +   R+           Y+LGG          + CY+ 
Sbjct: 25  SCRYFNPKD--YSWTDIRCPFEK---RRDAACVFWDNVVYILGGSQLFPIKR--MDCYNV 77

Query: 144 SMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSW----DVYDPRTNNWKLHTEPN 199
             ++W       T R          KIY  GG    +S     + YD RT +W  HT+P+
Sbjct: 78  VKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESW--HTKPS 135

Query: 200 IFTEIED--SFVMDGKIYIRCSASAATSHVCAL----VYEPSTDSWLHADANMASGWRGP 253
           + T+         +G IY+   +         L    VY+P+T++W      M    +  
Sbjct: 136 MLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTEL-CPMIEARKNH 194

Query: 254 AVVV-DDALYVLDQSSGTKLM----MWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFV 308
            +V   D ++ +   +G   +     +  +  EW  V  +         K  A+G  ++V
Sbjct: 195 GLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW--KGVTVKCAAVGSIVYV 252

Query: 309 IG 310
           + 
Sbjct: 253 LA 254

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score =  103 bits (260), Expect = 9e-26
 Identities = 47/274 (17%), Positives = 71/274 (25%), Gaps = 57/274 (20%)

Query: 71  IYAF--CRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGC 128
           +Y     +   ++R+ CY  +      SW      P     R  +         Y  GG 
Sbjct: 58  VYILGGSQLFPIKRMDCY--NVVK--DSWYSKLGPPTP---RDSLAACAAEGKIYTSGGS 110

Query: 129 GWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWD----- 183
                A     CYD    +W     M T RC       N  IY  GG    +        
Sbjct: 111 EVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNS 170

Query: 184 --VYDPRTNNWKLHTEPNIFTEIED---------SFVMDGKIYIRCSASAATSHVCALVY 232
             VYDP T  W         TE+              +  KI+     +          Y
Sbjct: 171 CEVYDPATETW---------TELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYY 221

Query: 233 EPSTDSWLHADANMASGWRGPAVVV-DDALYVLDQSSGTKLM----MWQKESREWSPVGR 287
           +   + W    + M               +YVL    G   +     +  E+ +W    +
Sbjct: 222 DIKLNEWKMV-SPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSK 280

Query: 288 LSTLLTRPPCKLVAIGKTIFVIGKGCSAVVIDVG 321
           +                        C   V+D  
Sbjct: 281 VRAFP-----------------VTSCLICVVDTC 297

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 86.2 bits (214), Expect = 2e-19
 Identities = 40/223 (17%), Positives = 74/223 (33%), Gaps = 36/223 (16%)

Query: 106 RTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGV 165
            T  R+      +     L GG             ++    +WTD       R    C  
Sbjct: 3   GTRPRRKKHDYRI----ALFGG-----SQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF 53

Query: 166 LNQKIYCIGG--LGDTHSWDVYDPRTNNWK----LHTEPNIFTEIEDSFVMDGKIYI--- 216
            +  +Y +GG  L      D Y+   ++W       T  +       +   +GKIY    
Sbjct: 54  WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLA----ACAAEGKIYTSGG 109

Query: 217 RCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVV-DDALYVL---DQSSGTKL 272
               ++A        Y+  T+SW H   +M +      +V  +  +YV      ++ +  
Sbjct: 110 SEVGNSALYLF--ECYDTRTESW-HTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGR 166

Query: 273 MMWQKE-----SREWSPVGRLSTLLTRPPCKLVAIGKTIFVIG 310
           ++   E     +  W+ +  +     R    LV +   IF +G
Sbjct: 167 VLNSCEVYDPATETWTELCPMIE--ARKNHGLVFVKDKIFAVG 207

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score =  113 bits (284), Expect = 4e-29
 Identities = 52/252 (20%), Positives = 89/252 (35%), Gaps = 23/252 (9%)

Query: 71  IYAF--CRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGC 128
           +          +  V CY  D       W  + ELP+R   R   G   +    + +GG 
Sbjct: 18  MVVVGGQAPKAIRSVECY--DFKE--ERWHQVAELPSR---RCRAGMVYMAGLVFAVGGF 70

Query: 129 GWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTH---SWDVY 185
                    V  YD   + WT  A M   R      VLN  +Y +GG   +    S + Y
Sbjct: 71  N-GSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAY 129

Query: 186 DPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIR--CSASAATSHVCALVYEPSTDSWLHAD 243
           + ++N W      N         V+ G +Y       ++         Y  +T+ W    
Sbjct: 130 NIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEW-TYI 188

Query: 244 ANMASGWRGPAVVV-DDALYVLDQSSGTKLM----MWQKESREWSPVGRLSTLLTRPPCK 298
           A M++   G  V V ++ LY +    G  +     ++   +  W  V  ++    R    
Sbjct: 189 AEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM--CRRNAG 246

Query: 299 LVAIGKTIFVIG 310
           + A+   ++V+G
Sbjct: 247 VCAVNGLLYVVG 258

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score =  104 bits (261), Expect = 6e-26
 Identities = 49/177 (27%), Positives = 73/177 (41%), Gaps = 13/177 (7%)

Query: 87  VLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGC-GWSEDATSEVYCYDASM 145
             +  S    W  +  +  R   R  +G  V+G   Y +GG    S    S V CY+A+ 
Sbjct: 128 AYNIKS--NEWFHVAPMNTR---RSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATT 182

Query: 146 NTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWD---VYDPRTNNWKLHTEPNIFT 202
           N WT  A MST R     GVLN  +Y +GG           VYDP TN W      ++  
Sbjct: 183 NEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAW--RQVADMNM 240

Query: 203 EIEDS--FVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVV 257
              ++    ++G +Y+      + +      Y P+TD W    + M++G     V V
Sbjct: 241 CRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTV 297

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 92.3 bits (230), Expect = 1e-21
 Identities = 41/218 (18%), Positives = 77/218 (35%), Gaps = 23/218 (10%)

Query: 107 TLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL 166
           ++R +      L K   ++ G G +  A   V CYD     W   A + + RC      +
Sbjct: 3   SVRTRLRTPMNLPK-LMVVVG-GQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM 60

Query: 167 NQKIYCIGGLGDTHSWD---VYDPRTNNWK----LHTEPNIFTEIEDSFVMDGKIYIRCS 219
              ++ +GG   +        YDP  + W     +    +       + V++G +Y    
Sbjct: 61  AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLG----AAVLNGLLYAVGG 116

Query: 220 ASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVV-DDALYVL---DQSSGTKL--- 272
              +T       Y   ++ W    A M +      V V    LY +   D +S   L   
Sbjct: 117 FDGSTGLSSVEAYNIKSNEW-FHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTV 175

Query: 273 MMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIG 310
             +   + EW+ +  +ST   R    +  +   ++ +G
Sbjct: 176 ECYNATTNEWTYIAEMST--RRSGAGVGVLNNLLYAVG 211

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 7/96 (7%)

Query: 76  RDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDAT 135
            D  L R    V DP +   +W+ + ++    + R+  G   +    Y++GG   S    
Sbjct: 213 HDGPLVRKSVEVYDPTT--NAWRQVADMN---MCRRNAGVCAVNGLLYVVGGDDGSC-NL 266

Query: 136 SEVYCYDASMNTWTDAAP-MSTARCYFPCGVLNQKI 170
           + V  Y+ + + WT  +  MST R Y    V+++++
Sbjct: 267 ASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKRL 302

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 36/168 (21%), Positives = 62/168 (36%), Gaps = 18/168 (10%)

Query: 154 MSTARCYFPCGVLNQKIYCIGGLGDTH--SWDVYDPRTNNWKLHTEPNIFTEIEDSF--V 209
           MS          L + +  +GG       S + YD +   W  H    + +    +    
Sbjct: 2   MSVRTRLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERW--HQVAELPSRRCRAGMVY 59

Query: 210 MDGKIYI--RCSASAATSHVCALVYEPSTDSWLHADANMASG-WRGPAVVVDDALYVL-- 264
           M G ++     + S     V    Y+P  D W    ANM        A V++  LY +  
Sbjct: 60  MAGLVFAVGGFNGSLRVRTVD--SYDPVKDQWTSV-ANMRDRRSTLGAAVLNGLLYAVGG 116

Query: 265 -DQSSGTKLM-MWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIG 310
            D S+G   +  +  +S EW  V  ++T   R    +  +G  ++ +G
Sbjct: 117 FDGSTGLSSVEAYNIKSNEWFHVAPMNT--RRSSVGVGVVGGLLYAVG 162

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score =  111 bits (280), Expect = 1e-28
 Identities = 50/255 (19%), Positives = 83/255 (32%), Gaps = 26/255 (10%)

Query: 71  IYAF--CRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGC 128
           +         +         DP +  + W  +  +  +   R+ +    L    Y++GG 
Sbjct: 17  LLVVGGFGSQQSPIDVVEKYDPKT--QEWSFLPSITRK---RRYVASVSLHDRIYVIGGY 71

Query: 129 GWSEDATSEVYCYDASMN---TWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWD-- 183
                  S V C D + +    W   APM+  R       L   IY  GG   +      
Sbjct: 72  D-GRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSM 130

Query: 184 -VYDPRTNNWKLHTEPNIFTEIED--SFVMDGKIYIRCSASAATSHVCALVYEPSTDSWL 240
             YDP  + W      ++ T  E     V  G IY                Y+P T  W 
Sbjct: 131 ERYDPNIDQW--SMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHW- 187

Query: 241 HADANMASGWRGPAVVV-DDALYVLDQSSGTKLM----MWQKESREWSPVGRLSTLLTRP 295
                MA+   G  V + +D +YV+    GT  +     +   +  W+ V  ++T   R 
Sbjct: 188 TNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT--PRC 245

Query: 296 PCKLVAIGKTIFVIG 310
                 +   ++ I 
Sbjct: 246 YVGATVLRGRLYAIA 260

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 98.5 bits (246), Expect = 7e-24
 Identities = 49/202 (24%), Positives = 73/202 (36%), Gaps = 33/202 (16%)

Query: 71  IYA---FCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGG 127
           IY    F    +   +  Y  DPN     W M+ ++      R+G G  V     Y LGG
Sbjct: 115 IYVSGGFDGSRRHTSMERY--DPNI--DQWSMLGDMQTA---REGAGLVVASGVIYCLGG 167

Query: 128 CGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWD---V 184
                +  + V  YD     WT+  PM+T R      +LN  IY +GG   T        
Sbjct: 168 YD-GLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEA 226

Query: 185 YDPRTNNWKLHTEPNIFTEIED---------SFVMDGKIYIRCSASAATSHVCALVYEPS 235
           Y+ RT++W         T +           + V+ G++Y        +       Y+P 
Sbjct: 227 YNIRTDSW---------TTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPI 277

Query: 236 TDSWLHADANMASGWRGPAVVV 257
            DSW     +M +      V V
Sbjct: 278 IDSWEVV-TSMGTQRCDAGVCV 298

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 11/100 (11%)

Query: 71  IYA---FCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGG 127
           IY    F     L  V  Y  +  +   SW  +  +      R  +G  VL    Y + G
Sbjct: 209 IYVVGGFDGTAHLSSVEAY--NIRT--DSWTTVTSMT---TPRCYVGATVLRGRLYAIAG 261

Query: 128 CGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLN 167
              +    S + CYD  +++W     M T RC     VL 
Sbjct: 262 YDGNS-LLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLR 300

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score =  109 bits (275), Expect = 9e-28
 Identities = 43/261 (16%), Positives = 80/261 (30%), Gaps = 38/261 (14%)

Query: 71  IYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGW 130
           I+    +        Y  DP +    +            +  +         ++ GG  +
Sbjct: 7   IFMISEEG----AVAY--DP-AANECYCASLSSQVP---KNHVSLVTKENQVFVAGGLFY 56

Query: 131 SED-----ATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSW--- 182
           +ED      ++    +D   + W    P+ + RC F  G     IY +GG          
Sbjct: 57  NEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCL 116

Query: 183 ---DVYDPRTNNWKLHTEPNIFTEIED--SFVMDGKIYI---RCSASAATSHVCALVYEP 234
                YD  +  W       +   +           +Y+   + S     + +C  VY+P
Sbjct: 117 DSVMCYDRLSFKW--GESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMC--VYDP 172

Query: 235 STDSWLHADANMASGWRGPAVVV-DDALYVL---DQSSGTKLM-MWQKESREWSPVGRLS 289
               W    A M +        V D  + V      +  T    ++     +W+P     
Sbjct: 173 KKFEWKEL-APMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFP 231

Query: 290 TLLTRPPCKLVAIGKTIFVIG 310
               R    LV++  T++ IG
Sbjct: 232 Q--ERSSLSLVSLVGTLYAIG 250

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score =  109 bits (273), Expect = 2e-27
 Identities = 43/203 (21%), Positives = 59/203 (29%), Gaps = 25/203 (12%)

Query: 83  VCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYD 142
           V CY  D  S    W     LP       G          Y++GG G      +++  YD
Sbjct: 119 VMCY--DRLS--FKWGESDPLPYV---VYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYD 171

Query: 143 ASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTH---SWDVYDPRTNNWKLHTEPN 199
                W + APM TAR  F   V + +I    G+ DT    S +VY    N W       
Sbjct: 172 PKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWA--PFEA 229

Query: 200 IFTEIEDS--FVMDGKIYI---------RCSASAATSHVCALVYEPSTDSWLHADANMAS 248
              E        + G +Y                 T       Y      W        +
Sbjct: 230 FPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKW-EGVLREIA 288

Query: 249 GWRGPAVVVDDALYVLDQSSGTK 271
                A  +   L VL  +   +
Sbjct: 289 Y-AAGATFLPVRLNVLRLTKMAE 310

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score =  107 bits (270), Expect = 5e-27
 Identities = 43/194 (22%), Positives = 62/194 (31%), Gaps = 25/194 (12%)

Query: 85  CYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDAS 144
           CY  DP +    W  +  LP +     G          Y LGG    +  T+ V+ Y+  
Sbjct: 131 CY--DPVA--AKWSEVKNLPIK---VYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPK 183

Query: 145 MNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWD---VYDPRTNNWKLHTEPNIF 201
              W D APM T R  F   +   KI   GG+ +         +D +TN W+        
Sbjct: 184 KGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWE--VMTEFP 241

Query: 202 TEIEDS--FVMDGKIYI--------RCSASAATSHVCAL-VYEPSTDSWLHADANMASGW 250
            E        + G +Y           S   A + V  +  YE     W           
Sbjct: 242 QERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEW-AGMLKEIRYA 300

Query: 251 RGPAVVVDDALYVL 264
            G A  +   L + 
Sbjct: 301 SG-ASCLATRLNLF 313

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score =  106 bits (266), Expect = 2e-26
 Identities = 44/248 (17%), Positives = 80/248 (32%), Gaps = 33/248 (13%)

Query: 83  VCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSED-----ATSE 137
              Y  DP      +       A  + R            Y++GG    E+       S 
Sbjct: 26  AVAY--DP-MENECYL---TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSY 79

Query: 138 VYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSW-----DVYDPRTNNW 192
            +  D   + W    P+ +ARC F  G ++ KIY + G              YDP    W
Sbjct: 80  FFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKW 139

Query: 193 KLHTEPNIFTEIED--SFVMDGKIYI---RCSASAATSHVCALVYEPSTDSWLHADANMA 247
                 N+  ++        +G IY    +      T+ V   +Y P    W    A M 
Sbjct: 140 --SEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVF--IYNPKKGDWKDL-APMK 194

Query: 248 SGWRGPAVVV-DDALYVL---DQSSGTKLM-MWQKESREWSPVGRLSTLLTRPPCKLVAI 302
           +      V +    + +     +   +  +  +  ++ +W  +        R    LV++
Sbjct: 195 TPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ--ERSSISLVSL 252

Query: 303 GKTIFVIG 310
             +++ IG
Sbjct: 253 AGSLYAIG 260

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 74.7 bits (184), Expect = 3e-15
 Identities = 40/229 (17%), Positives = 72/229 (31%), Gaps = 44/229 (19%)

Query: 106 RTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWT-DAAPMSTARCYFPCG 164
             + R GM    +     L+          +    YD   N     A      R +    
Sbjct: 5   NDIPRHGMF---VKDLILLVND--------TAAVAYDPMENECYLTALAEQIPRNHSSIV 53

Query: 165 VLNQKIYCIGGL-GDTHSWD--------VYDPRTNNWK----LHTEPNIFTEIEDSFVMD 211
               ++Y +GGL  D  + D          D  ++ W     L +   +F        +D
Sbjct: 54  TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG----LGEVD 109

Query: 212 GKIYI----RCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVV-DDALYVL-- 264
            KIY+         A+   V  L Y+P    W     N+     G  V+  +  +Y L  
Sbjct: 110 DKIYVVAGKDLQTEASLDSV--LCYDPVAAKWSEV-KNLPIKVYGHNVISHNGMIYCLGG 166

Query: 265 ---DQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIG 310
              D+    ++ ++  +  +W  +  + T   R    +      I + G
Sbjct: 167 KTDDKKCTNRVFIYNPKKGDWKDLAPMKT--PRSMFGVAIHKGKIVIAG 213

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 16/112 (14%), Positives = 33/112 (29%), Gaps = 20/112 (17%)

Query: 71  IYA---FCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGG 127
           I        D     V  +  D  +    W+++ E P     R  +    L  + Y +GG
Sbjct: 209 IVIAGGVTEDGLSASVEAF--DLKT--NKWEVMTEFP---QERSSISLVSLAGSLYAIGG 261

Query: 128 CGWSE--------DATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIY 171
               +           ++++ Y+     W     +   R       L  ++ 
Sbjct: 262 FAMIQLESKEFAPTEVNDIWKYEDDKKEWA--GMLKEIRYASGASCLATRLN 311

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score =  103 bits (258), Expect = 4e-25
 Identities = 39/244 (15%), Positives = 78/244 (31%), Gaps = 31/244 (12%)

Query: 86  YVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSED----ATSEVYCY 141
           Y LD  +  + W  +   P     R       +  N Y+ GG G + +      ++V+ Y
Sbjct: 34  YKLDTQAKDKKWTALAAFP--GGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKY 91

Query: 142 DASMNTWTD-AAPMSTARCYFPCGVLNQKIYCIGGLGDTH---SWDVYDPRTNNWKLHTE 197
           +   N+W    +            V N K Y  GG+        ++  +    +     +
Sbjct: 92  NPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDK 151

Query: 198 PNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVV 257
            N               Y    A     +   L ++PST  W +A  +   G  G AVV 
Sbjct: 152 INA-------------HYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN 198

Query: 258 -DDALYVL-------DQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVI 309
             D  +++        ++     + +   + +W+ +  +S+              ++   
Sbjct: 199 KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFA 258

Query: 310 GKGC 313
           G   
Sbjct: 259 GGAG 262

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 63.8 bits (155), Expect = 2e-11
 Identities = 26/240 (10%), Positives = 55/240 (22%), Gaps = 65/240 (27%)

Query: 85  CYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCG--------------- 129
            +  +P +   SW  +           G    V    AY+ GG                 
Sbjct: 88  VHKYNPKT--NSWVKLMSHAPM--GMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAG 143

Query: 130 --WSEDA----------------TSEVYCYDASMNTWTDAAPMS-TARCYFPCGVLNQKI 170
              +                      +  +D S   W+ A                  K 
Sbjct: 144 KDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKT 203

Query: 171 YCIGGLGD----THSWDVYDPRTNNWKLHTEPNIFTEIED----SFVMDGKIYIRCSASA 222
           + I G       T +    D   NN K +    + +        + + +  +     A  
Sbjct: 204 WLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGF 263

Query: 223 ATSHVCAL-----------------VYEPSTDSWLHADANMASGWRGP-AVVVDDALYVL 264
             S                      ++      W      ++ G     ++  +++L ++
Sbjct: 264 KGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKW-DKSGELSQGRAYGVSLPWNNSLLII 322

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 63.4 bits (154), Expect = 2e-11
 Identities = 17/130 (13%), Positives = 32/130 (24%), Gaps = 19/130 (14%)

Query: 86  YVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATS--------- 136
           + LD       W  +  + +      G    +   +    GG G+     +         
Sbjct: 220 FELDFTGNNLKWNKLAPVSSPD-GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAH 278

Query: 137 -------EVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSW--DVYDP 187
                      +      W  +  +S  R Y      N  +  IGG         D    
Sbjct: 279 EGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLI 338

Query: 188 RTNNWKLHTE 197
              + K+  +
Sbjct: 339 TVKDNKVTVQ 348

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score =  102 bits (255), Expect = 5e-25
 Identities = 50/193 (25%), Positives = 65/193 (33%), Gaps = 15/193 (7%)

Query: 71  IYA---FCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGG 127
           IYA            V  Y  +P      W ++  +  R   R G+G  VL +  Y +GG
Sbjct: 124 IYAVGGSHGCIHHNSVERY--EPER--DEWHLVAPMLTR---RIGVGVAVLNRLLYAVGG 176

Query: 128 CGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWD---V 184
              +    S   CY    N W     M+T R      VL+  IY  GG       +    
Sbjct: 177 FDGTNRLNS-AECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVER 235

Query: 185 YDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADA 244
           YD  T  W                V  G+IY+       T       Y+P TD+W     
Sbjct: 236 YDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV-T 294

Query: 245 NMASGWRGPAVVV 257
            M SG  G  V V
Sbjct: 295 RMTSGRSGVGVAV 307

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 90.1 bits (224), Expect = 1e-20
 Identities = 50/226 (22%), Positives = 79/226 (34%), Gaps = 26/226 (11%)

Query: 101 HELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCY 160
           H   +  + R       +G+  Y  GG  +   + S +  Y+ S  TW   A +   R  
Sbjct: 7   HHHSSGLVPRGSHA-PKVGRLIYTAGG--YFRQSLSYLEAYNPSNGTWLRLADLQVPRSG 63

Query: 161 FPCGVLNQKIYCIGGLGDTHSW-------DVYDPRTNNWK----LHTEPNIFTEIEDSFV 209
               V+   +Y +GG  ++          D Y+P TN W     +    N         V
Sbjct: 64  LAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG----VGV 119

Query: 210 MDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVV-DDALYVL---- 264
           +DG IY    +     H     YEP  D W H  A M +   G  V V +  LY +    
Sbjct: 120 IDGHIYAVGGSHGCIHHNSVERYEPERDEW-HLVAPMLTRRIGVGVAVLNRLLYAVGGFD 178

Query: 265 DQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIG 310
             +       +  E  EW  +  ++T   R    +  +   I+  G
Sbjct: 179 GTNRLNSAECYYPERNEWRMITAMNT--IRSGAGVCVLHNCIYAAG 222

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 66.6 bits (163), Expect = 1e-12
 Identities = 31/179 (17%), Positives = 56/179 (31%), Gaps = 15/179 (8%)

Query: 143 ASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDV--YDPRTNNWKLHTEPNI 200
            S +     +     R       + + IY  GG        +  Y+P    W    +  +
Sbjct: 1   GSSHHHHHHSSGLVPRGS-HAPKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQV 59

Query: 201 FTEIEDSFVMDGKIYI----RCSASAATSHVCALVYEPSTDSWLHADANMASG-WRGPAV 255
                   V+ G +Y       S    T       Y P T+ W    A M+    R    
Sbjct: 60  PRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPC-APMSVPRNRIGVG 118

Query: 256 VVDDALYVL---DQSSGTKLM-MWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIG 310
           V+D  +Y +           +  ++ E  EW  V  + T   R    +  + + ++ +G
Sbjct: 119 VIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLT--RRIGVGVAVLNRLLYAVG 175

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 54.0 bits (129), Expect = 4e-08
 Identities = 38/302 (12%), Positives = 86/302 (28%), Gaps = 54/302 (17%)

Query: 28  FCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHN--LDETWIYAF-----CRDNKL 80
                           ++      L   E    R+  +  +    ++        R N++
Sbjct: 355 AFTQGFLFDRSISEINLTVDEDYQLLECECPINRKFGDVDVAGNDVFYMGGSNPYRVNEI 414

Query: 81  ERVCCYVLDPNSTRRSWKMIHELPART-LRRKGMGFEVLGKN--AYLLGGCGWSEDATSE 137
                  L  +  +   K I    +   + R    F  + +N    L+GG        S+
Sbjct: 415 -----LQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSD 469

Query: 138 VYCYDASMNTWTDAAPMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNNWKLH 195
            + +D     W+    +S  R +        +  +  +GG+ +  +  +Y+     +K  
Sbjct: 470 NWIFDMKTREWSMIKSLSHTR-FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDV 528

Query: 196 TEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAV 255
           T  +                       +           S    +     +  G+     
Sbjct: 529 TPKDE------------------FFQNSLVSAGLEFDPVSKQGII-----LGGGFMDQTT 565

Query: 256 VVDDA-LYVLDQSSGTKLMMWQKESREWSPVGRLST-LLTRPPCKLVAIGK-TIFVIGKG 312
           V D A ++  D  + T+           + + +L   L  R   ++  I    + ++G G
Sbjct: 566 VSDKAIIFKYDAENATE---------PITVIKKLQHPLFQRYGSQIKYITPRKLLIVG-G 615

Query: 313 CS 314
            S
Sbjct: 616 TS 617

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 21/158 (13%), Positives = 45/158 (28%), Gaps = 28/158 (17%)

Query: 85  CYVLDPNSTRRSWKMIH---ELPARTLRRKGMGFEVLGKNAYLL-GGCGWSEDATSEVYC 140
             + +       +K +    E    +L   G+ F+ + K   +L GG       + +   
Sbjct: 515 MLLYNVTE--EIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAII 572

Query: 141 YDASMNTWTD-------AAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWD------VYD 186
           +       T+              R       +  +K+  +GG   +  +D        D
Sbjct: 573 FKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLD 632

Query: 187 PRTNNW-KLHTEPNIFTEIEDSFVM-------DGKIYI 216
           P +     +     I+ +               G I+I
Sbjct: 633 PLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHI 670

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 11/104 (10%)

Query: 83  VCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNA-YLLGGCGWSE--DATSEVY 139
              +  D  +      +I +L     +R G   + +      ++GG   S   D T+ + 
Sbjct: 570 AIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629

Query: 140 CYDASMNTWTDAAPMSTARCYFP--------CGVLNQKIYCIGG 175
             D    T T                            I+ IGG
Sbjct: 630 SLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGG 673

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 48.4 bits (114), Expect = 2e-06
 Identities = 21/173 (12%), Positives = 40/173 (23%), Gaps = 11/173 (6%)

Query: 37  YHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDETWIYAFCRDNKLERVCCYVLDPNSTRRS 96
                        G                    +  +                 ++   
Sbjct: 166 SSYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWD 225

Query: 97  WKMIHELPARTLRRKGMGFE---VLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAP 153
                         K   F     +  N  ++   G     T     YD+S ++W     
Sbjct: 226 PSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT---SLYDSSSDSWIPGPD 282

Query: 154 MSTARCYFPCGVL-NQKIYCIGGLGD----THSWDVYDPRTNNWKLHTEPNIF 201
           M  AR Y     + + +++ IGG         + +VY P +  W       + 
Sbjct: 283 MQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVN 335

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 40.7 bits (94), Expect = 7e-04
 Identities = 25/178 (14%), Positives = 50/178 (28%), Gaps = 24/178 (13%)

Query: 78  NKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGC-----GWSE 132
                +     +P ++  +    + L     R       +   + ++ GG          
Sbjct: 429 TNAHIITLG--EPGTSPNTVFASNGLYFA--RTFHTSVVLPDGSTFITGGQRRGIPFEDS 484

Query: 133 DATSEVYCYDASMNTWTDAAPMSTARCYFP--CGVLNQKIYCIGGLGD------THSWDV 184
                   Y    +T+    P S  R Y      + + +++  GG              +
Sbjct: 485 TPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQI 544

Query: 185 YDPRTNNW---KLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSW 239
           + P         L T P I      S  + G+I I   +S +     A +    T + 
Sbjct: 545 FTPNYLYNSNGNLATRPKITRTSTQSVKVGGRITISTDSSISK----ASLIRYGTATH 598

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	352
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	100.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	100.0
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.97
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.96
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.94
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.92
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.78
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.57
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.5
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.46
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.44
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.33
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.2
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.2
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.13
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.11
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.02
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.01
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.0
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.99
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.96
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.92
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.91
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.87
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.82
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.8
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.73
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.71
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.68
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.59
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.56
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.55
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.55
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.51
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.5
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.49
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.48
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.46
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.46
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.46
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	97.45
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.42
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.39
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.39
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.38
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.36
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	97.35
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.34
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.33
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.32
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.32
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	97.32
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.3
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	97.29
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	97.28
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.26
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.25
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	97.23
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.23
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.22
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	97.21
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.2
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	97.13
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.13
3jro_A	753	Fusion protein of protein transport protein SEC13	97.11
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.09
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.09
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.07
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	97.07
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	97.04
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.03
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	97.02
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.01
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.0
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	96.97
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	96.95
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	96.95
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	96.94
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	96.93
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.93
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	96.92
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	96.91
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	96.89
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	96.88
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	96.87
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	96.85
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	96.84
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	96.83
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	96.82
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	96.81
3ott_A	758	Two-component system sensor histidine kinase; beta	96.79
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	96.77
3jro_A	753	Fusion protein of protein transport protein SEC13	96.75
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	96.74
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	96.7
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.69
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	96.66
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	96.65
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.64
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.64
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.6
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.58
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	96.58
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	96.58
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	96.57
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	96.57
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	96.56
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	96.55
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	96.53
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	96.48
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	96.44
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	96.44
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	96.43
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	96.43
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	96.42
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	96.42
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	96.38
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	96.37
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	96.36
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	96.35
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	96.34
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	96.33
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	96.32
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	96.32
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.32
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	96.31
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	96.27
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.26
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	96.26
2pm7_B	297	Protein transport protein SEC13, protein transport	96.24
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	96.21
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	96.2
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	96.2
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	96.18
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	96.18
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.17
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	96.14
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	96.11
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.09
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	96.08
2pm7_B	297	Protein transport protein SEC13, protein transport	96.07
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	96.06
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	96.06
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	96.06
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	96.04
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.04
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	96.03
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	96.02
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	95.99
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	95.98
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.98
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.98
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	95.98
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	95.97
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	95.88
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	95.86
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	95.86
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	95.84
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	95.83
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	95.82
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	95.79
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	95.79
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	95.75
1pex_A	207	Collagenase-3, MMP-13; C-terminal hemopexin-like d	95.74
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	95.73
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.73
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	95.73
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	95.72
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	95.68
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	95.65
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	95.65
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	95.62
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	95.6
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	95.6
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	95.6
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	95.59
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	95.58
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	95.53
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	95.47
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	95.44
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	95.44
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	95.41
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	95.4
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	95.34
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	95.34
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	95.34
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	95.33
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.31
3v65_B	386	Low-density lipoprotein receptor-related protein;	95.25
3ott_A	758	Two-component system sensor histidine kinase; beta	95.11
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	95.1
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	95.07
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	95.04
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	94.93
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	94.9
1itv_A	195	MMP9; adaptive molecular recognition, beta propell	94.9
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	94.84
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	94.82
1pex_A	207	Collagenase-3, MMP-13; C-terminal hemopexin-like d	94.72
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	94.67
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	94.62
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	94.48
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	94.47
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	94.43
3oyo_A	225	Hemopexin fold protein CP4; seeds, plant protein;	94.36
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	94.35
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	94.31
3c7x_A	196	Matrix metalloproteinase-14; membrane protein inte	94.21
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	94.21
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	94.11
3oyo_A	225	Hemopexin fold protein CP4; seeds, plant protein;	94.07
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	94.03
1su3_A	450	Interstitial collagenase; prodomain, hemopexin dom	93.99
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	93.98
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	93.95
3ba0_A	365	Macrophage metalloelastase; FULL-length MMP-12, he	93.93
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	93.86
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	93.86
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	93.77
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	93.55
1itv_A	195	MMP9; adaptive molecular recognition, beta propell	93.52
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	93.5
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	93.29
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	93.27
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	93.24
3lp9_A	227	LS-24; SEED albumin, plant protein; HET: SPM; 2.20	93.22
2p4o_A	306	Hypothetical protein; putative lactonase, structur	93.22
1su3_A	450	Interstitial collagenase; prodomain, hemopexin dom	93.06
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	92.96
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	92.93
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	92.7
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	92.52
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	92.51
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	92.4
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	92.39
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	92.37
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	92.37
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	92.36
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	92.23
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	92.2
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	92.02
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	91.95
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	91.91
3c7x_A	196	Matrix metalloproteinase-14; membrane protein inte	91.9
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	91.74
1k32_A	1045	Tricorn protease; protein degradation, substrate g	91.73
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	91.62
1hxn_A	219	Hemopexin, HPX; heme, binding protein; 1.80A {Oryc	91.37
1gen_A	218	Gelatinase A; hydrolase, hemopexin domain, metallo	91.32
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	91.22
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	91.22
2ece_A	462	462AA long hypothetical selenium-binding protein;	91.15
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	91.14
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	91.07
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	91.0
3lp9_A	227	LS-24; SEED albumin, plant protein; HET: SPM; 2.20	91.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	90.98
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	90.95
3ba0_A	365	Macrophage metalloelastase; FULL-length MMP-12, he	90.69
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	90.68
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	90.51
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	90.48
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	90.13
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	89.7
1hxn_A	219	Hemopexin, HPX; heme, binding protein; 1.80A {Oryc	89.55
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	89.18
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	89.02
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	88.8
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	88.77
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	88.58
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	88.51
1k32_A	1045	Tricorn protease; protein degradation, substrate g	88.44
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	88.37
1gen_A	218	Gelatinase A; hydrolase, hemopexin domain, metallo	88.23
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	87.81
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	87.7
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	87.43
3ju4_A	670	Endo-N-acetylneuraminidase; endonf, polysia, high-	87.06
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	86.96
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	86.95
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	86.62
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	85.81
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	85.22
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	85.15
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	84.83
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	84.2
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	83.67
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	83.55
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	83.27
1ck7_A	631	Protein (gelatinase A); hydrolase (metalloprotease	82.66

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=2.1e-43  Score=313.68  Aligned_cols=255  Identities=20%  Similarity=0.318  Sum_probs=223.4

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCC---CCCCCCCeEEEEECC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCG---WSEDATSEVYCYDAS  144 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~---~~~~~~~~~~~~d~~  144 (352)
                      ++.||++||.+......++.||+  .+++|..++++|   .+|.+++++.++++||++||..   ......+++++||+.
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~--~~~~W~~~~~~p---~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~   98 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNP--SNGTWLRLADLQ---VPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPM   98 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEET--TTTEEEECCCCS---SCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred             CCEEEEEeCcCCCCcceEEEEcC--CCCeEeECCCCC---cccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCC
Confidence            88999999974444456899999  999999999888   6789999999999999999973   222457899999999


Q ss_pred             CCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCC---CceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCC
Q 045821          145 MNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDT---HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSAS  221 (352)
Q Consensus       145 t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~---~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~  221 (352)
                      +++|+.++++|.+|..|+++.++++||++||....   +++++||+.+++|+.++++|.++..+++++++++||++||..
T Consensus        99 ~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  178 (308)
T 1zgk_A           99 TNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFD  178 (308)
T ss_dssp             TTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred             CCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCC
Confidence            99999999999999999999999999999997654   889999999999999999999999999999999999999988


Q ss_pred             CCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCC----CeEEEEeCCCCceEEccCCCCCcCCCCc
Q 045821          222 AATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSG----TKLMMWQKESREWSPVGRLSTLLTRPPC  297 (352)
Q Consensus       222 ~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~----~~v~~yd~~~~~W~~~~~~~~~~~~~~~  297 (352)
                      ......++++||+.+++|+.+++.+..+..+.++..+++||++||..+    +++++||+++++|++++.+|.  .+..+
T Consensus       179 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~--~r~~~  256 (308)
T 1zgk_A          179 GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH--RRSAL  256 (308)
T ss_dssp             SSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS--CCBSC
T ss_pred             CCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCC--Cccce
Confidence            766677999999999999999876655555566788999999999764    589999999999999998876  57788


Q ss_pred             eEEEeCCEEEEEcCCc------eEEEEEcCCcccccce
Q 045821          298 KLVAIGKTIFVIGKGC------SAVVIDVGNIGNIGGI  329 (352)
Q Consensus       298 ~~~~~~~~i~v~gG~~------~~~~~d~~~~~w~~~~  329 (352)
                      +++.++++||++||..      ++++||+++++|.+..
T Consensus       257 ~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~  294 (308)
T 1zgk_A          257 GITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVT  294 (308)
T ss_dssp             EEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE
T ss_pred             EEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEeecC
Confidence            8888999999999943      5778999999998753

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.9e-42  Score=306.64  Aligned_cols=252  Identities=19%  Similarity=0.297  Sum_probs=221.8

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCe
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNT  147 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~  147 (352)
                      ++.||++||.+.......+.||+  .+++|..++++|   .+|..++++.++++||++||.+.. ...+++++||+.+++
T Consensus        15 ~~~i~v~GG~~~~~~~~~~~~d~--~~~~W~~~~~~p---~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~d~~~~~   88 (302)
T 2xn4_A           15 PKLMVVVGGQAPKAIRSVECYDF--KEERWHQVAELP---SRRCRAGMVYMAGLVFAVGGFNGS-LRVRTVDSYDPVKDQ   88 (302)
T ss_dssp             CEEEEEECCBSSSBCCCEEEEET--TTTEEEEECCCS---SCCBSCEEEEETTEEEEESCBCSS-SBCCCEEEEETTTTE
T ss_pred             CCEEEEECCCCCCCCCcEEEEcC--cCCcEeEcccCC---cccccceEEEECCEEEEEeCcCCC-ccccceEEECCCCCc
Confidence            78899999986544556899999  999999999888   678999999999999999998654 567899999999999


Q ss_pred             eEecCCCCCcceeeeeEEECCEEEEEeCCCCC---CceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCC
Q 045821          148 WTDAAPMSTARCYFPCGVLNQKIYCIGGLGDT---HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAAT  224 (352)
Q Consensus       148 W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~---~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~  224 (352)
                      |+.++++|.+|..|+++.++++||++||....   +++++||+.+++|+.++++|.++..+++++++++||++||.....
T Consensus        89 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~  168 (302)
T 2xn4_A           89 WTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVAS  168 (302)
T ss_dssp             EEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTT
T ss_pred             eeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCC
Confidence            99999999999999999999999999997654   789999999999999999999998888999999999999986543


Q ss_pred             C--ceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCC----CeEEEEeCCCCceEEccCCCCCcCCCCce
Q 045821          225 S--HVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSG----TKLMMWQKESREWSPVGRLSTLLTRPPCK  298 (352)
Q Consensus       225 ~--~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~----~~v~~yd~~~~~W~~~~~~~~~~~~~~~~  298 (352)
                      .  ..++++||+.+++|+.+++.+..+..+.++..+++||++||..+    +++++||+++++|++++.+|.  .+..++
T Consensus       169 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~--~r~~~~  246 (302)
T 2xn4_A          169 RQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM--CRRNAG  246 (302)
T ss_dssp             TEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSS--CCBSCE
T ss_pred             CccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCC--ccccCe
Confidence            2  45899999999999999876655555566788999999999754    589999999999999998876  477788


Q ss_pred             EEEeCCEEEEEcCCc------eEEEEEcCCccccc
Q 045821          299 LVAIGKTIFVIGKGC------SAVVIDVGNIGNIG  327 (352)
Q Consensus       299 ~~~~~~~i~v~gG~~------~~~~~d~~~~~w~~  327 (352)
                      ++.++++||++||..      ++++||+++++|..
T Consensus       247 ~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  281 (302)
T 2xn4_A          247 VCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTV  281 (302)
T ss_dssp             EEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             EEEECCEEEEECCcCCCcccccEEEEcCCCCeEEE
Confidence            889999999999954      47889999999976

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=1.3e-42  Score=308.18  Aligned_cols=254  Identities=18%  Similarity=0.302  Sum_probs=224.3

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCe
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNT  147 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~  147 (352)
                      .+.||++||.+.  ...++.||+  .+++|..++++|   .+|.+++++.++++||++||.+  ....+++++||+.+++
T Consensus        11 ~~~l~~~GG~~~--~~~~~~~d~--~~~~W~~~~~~p---~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~d~~~~~   81 (306)
T 3ii7_A           11 HDYRIALFGGSQ--PQSCRYFNP--KDYSWTDIRCPF---EKRRDAACVFWDNVVYILGGSQ--LFPIKRMDCYNVVKDS   81 (306)
T ss_dssp             CCEEEEEECCSS--TTSEEEEET--TTTEEEECCCCS---CCCBSCEEEEETTEEEEECCBS--SSBCCEEEEEETTTTE
T ss_pred             cceEEEEeCCCC--CceEEEecC--CCCCEecCCCCC---cccceeEEEEECCEEEEEeCCC--CCCcceEEEEeCCCCe
Confidence            578999999754  456889999  999999999988   6899999999999999999987  3678999999999999


Q ss_pred             eEecCCCCCcceeeeeEEECCEEEEEeCCCCC----CceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCC
Q 045821          148 WTDAAPMSTARCYFPCGVLNQKIYCIGGLGDT----HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAA  223 (352)
Q Consensus       148 W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~----~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~  223 (352)
                      |..++++|.+|..|+++.++++||++||.+..    +++++||+.+++|+.++++|.++..++++.++++||++||....
T Consensus        82 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~  161 (306)
T 3ii7_A           82 WYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGN  161 (306)
T ss_dssp             EEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESC
T ss_pred             EEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCC
Confidence            99999999999999999999999999998632    88999999999999999999999999999999999999998765


Q ss_pred             CC----ceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCC----CeEEEEeCCCCceEEccCCCCCcCCC
Q 045821          224 TS----HVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSG----TKLMMWQKESREWSPVGRLSTLLTRP  295 (352)
Q Consensus       224 ~~----~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~----~~v~~yd~~~~~W~~~~~~~~~~~~~  295 (352)
                      ..    ..++++||+.+++|+.+++.+..+..+.++..+++||++||..+    +++++||+++++|+.++.+|.  .+.
T Consensus       162 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~  239 (306)
T 3ii7_A          162 NVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW--KGV  239 (306)
T ss_dssp             TTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSC--CBS
T ss_pred             CCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCC--Ccc
Confidence            54    66899999999999999876655555666788999999999754    579999999999999998886  577


Q ss_pred             CceEEEeCCEEEEEcCCc------eEEEEEcCCcccccceEEe
Q 045821          296 PCKLVAIGKTIFVIGKGC------SAVVIDVGNIGNIGGIMVS  332 (352)
Q Consensus       296 ~~~~~~~~~~i~v~gG~~------~~~~~d~~~~~w~~~~~~~  332 (352)
                      .++++.++++||++||..      ++++||+++++|.....++
T Consensus       240 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~  282 (306)
T 3ii7_A          240 TVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVR  282 (306)
T ss_dssp             CCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEE
T ss_pred             ceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcc
Confidence            888889999999999953      5778999999999876664

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.2e-41  Score=301.34  Aligned_cols=258  Identities=18%  Similarity=0.290  Sum_probs=224.8

Q ss_pred             CCCEEEEEEe-cCCC-CceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECC
Q 045821           67 DETWIYAFCR-DNKL-ERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDAS  144 (352)
Q Consensus        67 ~~~~l~~~gg-~~~~-~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~  144 (352)
                      .++.||++|| .+.. ....++.||+  .+++|..++++|   .+|.+++++..+++||++||.... ...+++++||+.
T Consensus        13 ~~~~i~~~GG~~~~~~~~~~~~~~d~--~~~~W~~~~~~p---~~r~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~d~~   86 (301)
T 2vpj_A           13 ANEVLLVVGGFGSQQSPIDVVEKYDP--KTQEWSFLPSIT---RKRRYVASVSLHDRIYVIGGYDGR-SRLSSVECLDYT   86 (301)
T ss_dssp             CCEEEEEECCEETTTEECCCEEEEET--TTTEEEECCCCS---SCCBSCEEEEETTEEEEECCBCSS-CBCCCEEEEETT
T ss_pred             CCCEEEEEeCccCCCcceeEEEEEcC--CCCeEEeCCCCC---hhhccccEEEECCEEEEEcCCCCC-ccCceEEEEECC
Confidence            4788999999 5422 2346899999  999999999887   678999999999999999998753 567899999999


Q ss_pred             CCe---eEecCCCCCcceeeeeEEECCEEEEEeCCCCC---CceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEc
Q 045821          145 MNT---WTDAAPMSTARCYFPCGVLNQKIYCIGGLGDT---HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRC  218 (352)
Q Consensus       145 t~~---W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~---~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~G  218 (352)
                      +++   |+.++++|.+|..|+++.++++||++||....   +++++||+.+++|+.++++|.++..+++++++++||++|
T Consensus        87 ~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G  166 (301)
T 2vpj_A           87 ADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLG  166 (301)
T ss_dssp             CCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEEC
T ss_pred             CCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEEC
Confidence            999   99999999999999999999999999998754   789999999999999999998888888999999999999


Q ss_pred             cCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCC----CeEEEEeCCCCceEEccCCCCCcCC
Q 045821          219 SASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSG----TKLMMWQKESREWSPVGRLSTLLTR  294 (352)
Q Consensus       219 G~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~----~~v~~yd~~~~~W~~~~~~~~~~~~  294 (352)
                      |.........+++||+.+++|+.+++.+..+..+.++..+++||++||..+    +++++||+++++|++++.+|.  .+
T Consensus       167 G~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~--~r  244 (301)
T 2vpj_A          167 GYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT--PR  244 (301)
T ss_dssp             CBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSS--CC
T ss_pred             CCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCC--cc
Confidence            987666667999999999999999776555555566788999999999764    589999999999999998876  57


Q ss_pred             CCceEEEeCCEEEEEcCCc------eEEEEEcCCcccccceEEe
Q 045821          295 PPCKLVAIGKTIFVIGKGC------SAVVIDVGNIGNIGGIMVS  332 (352)
Q Consensus       295 ~~~~~~~~~~~i~v~gG~~------~~~~~d~~~~~w~~~~~~~  332 (352)
                      ..++++.++++||++||..      .+++||+++++|.....++
T Consensus       245 ~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~  288 (301)
T 2vpj_A          245 CYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMG  288 (301)
T ss_dssp             BSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEE
T ss_pred             cceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCC
Confidence            7788888999999999953      4678999999998865554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=7e-41  Score=298.32  Aligned_cols=249  Identities=16%  Similarity=0.241  Sum_probs=212.8

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCC----C-CCCCCCeEEEEE
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCG----W-SEDATSEVYCYD  142 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~----~-~~~~~~~~~~~d  142 (352)
                      ++.||++||.      .++.|||  .+++|.. +++|.+ .+|.+++++..+++||++||..    . .....+++++||
T Consensus         4 ~~~l~~~GG~------~~~~yd~--~~~~W~~-~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d   73 (315)
T 4asc_A            4 QDLIFMISEE------GAVAYDP--AANECYC-ASLSSQ-VPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFD   73 (315)
T ss_dssp             EEEEEEEETT------EEEEEET--TTTEEEE-EECCCC-SCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEE
T ss_pred             ceEEEEEcCC------ceEEECC--CCCeEec-CCCCCC-CCccceEEEEECCEEEEEcCcccCCCCCccccccceEEec
Confidence            4678999983      6889999  9999987 666532 5799999999999999999952    1 222345699999


Q ss_pred             CCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCC----C--CceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEE
Q 045821          143 ASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGD----T--HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYI  216 (352)
Q Consensus       143 ~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~----~--~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv  216 (352)
                      +.+++|+.++++|.+|..|+++.++++||++||...    .  +++++||+.+++|+.++++|.++..+++++++++||+
T Consensus        74 ~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv  153 (315)
T 4asc_A           74 HLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYV  153 (315)
T ss_dssp             TTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEE
T ss_pred             CCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEE
Confidence            999999999999999999999999999999999642    2  8999999999999999999999999999999999999


Q ss_pred             EccC-CCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCC----CeEEEEeCCCCceEEccCCCCC
Q 045821          217 RCSA-SAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSG----TKLMMWQKESREWSPVGRLSTL  291 (352)
Q Consensus       217 ~GG~-~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~----~~v~~yd~~~~~W~~~~~~~~~  291 (352)
                      +||. .......++++||+.+++|+.+++.+..+..+.++..+++||++||..+    +++++||+++++|+.++.+|. 
T Consensus       154 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-  232 (315)
T 4asc_A          154 IGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQ-  232 (315)
T ss_dssp             ECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSS-
T ss_pred             EeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCC-
Confidence            9998 4444456999999999999999876666656667788999999999765    479999999999999998876 


Q ss_pred             cCCCCceEEEeCCEEEEEcCCc---------------eEEEEEcCCcccccc
Q 045821          292 LTRPPCKLVAIGKTIFVIGKGC---------------SAVVIDVGNIGNIGG  328 (352)
Q Consensus       292 ~~~~~~~~~~~~~~i~v~gG~~---------------~~~~~d~~~~~w~~~  328 (352)
                       .|..++++.++++||++||..               ++++||+++++|.+.
T Consensus       233 -~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          233 -ERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             -CCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             -cccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence             577888889999999999963               356799999999764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=3.2e-40  Score=294.46  Aligned_cols=249  Identities=16%  Similarity=0.283  Sum_probs=210.5

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCC-----CCCCCeEEEEE
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWS-----EDATSEVYCYD  142 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~-----~~~~~~~~~~d  142 (352)
                      .+.||++||.      ..+.|||  .+++|... +++.+ .+|..++++..+++||++||....     ....+++++||
T Consensus        15 ~~~i~~~GG~------~~~~yd~--~~~~W~~~-~~~~~-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d   84 (318)
T 2woz_A           15 KDLILLVNDT------AAVAYDP--MENECYLT-ALAEQ-IPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLD   84 (318)
T ss_dssp             EEEEEEECSS------EEEEEET--TTTEEEEE-EECTT-SCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEE
T ss_pred             cchhhhcccc------ceEEECC--CCCceecc-cCCcc-CCccceEEEEECCEEEEECCcccCccccCCCccccEEEEe
Confidence            6789999985      4789999  99999984 44422 578889999999999999995321     12234599999


Q ss_pred             CCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCC--C---CceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEE
Q 045821          143 ASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGD--T---HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIR  217 (352)
Q Consensus       143 ~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~--~---~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~  217 (352)
                      +.+++|..++++|.+|..|+++.++++||++||...  .   +++++||+.+++|+.++++|.++..+++++++++||++
T Consensus        85 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~  164 (318)
T 2woz_A           85 NVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCL  164 (318)
T ss_dssp             TTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEE
T ss_pred             CCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEE
Confidence            999999999999999999999999999999999752  2   88999999999999999999999999899999999999


Q ss_pred             ccCCCC-CCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCC----CeEEEEeCCCCceEEccCCCCCc
Q 045821          218 CSASAA-TSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSG----TKLMMWQKESREWSPVGRLSTLL  292 (352)
Q Consensus       218 GG~~~~-~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~----~~v~~yd~~~~~W~~~~~~~~~~  292 (352)
                      ||.... ...+++++||+.+++|+.+++.+..+..+.+++.+++||++||..+    +++++||+++++|++++.+|.  
T Consensus       165 GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~--  242 (318)
T 2woz_A          165 GGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ--  242 (318)
T ss_dssp             CCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSS--
T ss_pred             cCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCC--
Confidence            997533 3456899999999999999876655555666788999999999654    478999999999999998886  


Q ss_pred             CCCCceEEEeCCEEEEEcCC---------------ceEEEEEcCCcccccc
Q 045821          293 TRPPCKLVAIGKTIFVIGKG---------------CSAVVIDVGNIGNIGG  328 (352)
Q Consensus       293 ~~~~~~~~~~~~~i~v~gG~---------------~~~~~~d~~~~~w~~~  328 (352)
                      .|..++++..+++||++||.               .++++||+++++|.+.
T Consensus       243 ~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          243 ERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             CCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             cccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence            57778889999999999995               2467899999999874

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=8.3e-40  Score=289.60  Aligned_cols=260  Identities=22%  Similarity=0.369  Sum_probs=217.8

Q ss_pred             ccchhhhhhhhhhcccccChhhHHHHhhCCCC--CCEEEEEEecCCCC-ceeEEEecCCCCCCCeeEeccCCCcccCCcc
Q 045821           36 RYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLD--ETWIYAFCRDNKLE-RVCCYVLDPNSTRRSWKMIHELPARTLRRKG  112 (352)
Q Consensus        36 ~~~~~l~~v~k~W~~l~~s~~~~~~~~~~~~~--~~~l~~~gg~~~~~-~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~  112 (352)
                      .+...+....+.|..+...|   ..|..+++.  ++.||++||.+... ...++.||+  .+++|+.++++|   .+|..
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p---~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~--~~~~W~~~~~~p---~~r~~  101 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELP---SRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDP--VKDQWTSVANMR---DRRST  101 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCS---SCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEET--TTTEEEEECCCS---SCCBS
T ss_pred             CcEEEEcCcCCcEeEcccCC---cccccceEEEECCEEEEEeCcCCCccccceEEECC--CCCceeeCCCCC---ccccc
Confidence            34556666778899885433   345555433  89999999975433 346889999  999999999988   68999


Q ss_pred             eEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCC-----CceEEEeC
Q 045821          113 MGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDT-----HSWDVYDP  187 (352)
Q Consensus       113 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~-----~~v~~yd~  187 (352)
                      |+++.++++||++||.+.. ...+++++||+.+++|+.++++|.+|..|+++.++++||++||....     +++++||+
T Consensus       102 ~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~  180 (302)
T 2xn4_A          102 LGAAVLNGLLYAVGGFDGS-TGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNA  180 (302)
T ss_dssp             CEEEEETTEEEEEEEECSS-CEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEET
T ss_pred             eEEEEECCEEEEEcCCCCC-ccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeC
Confidence            9999999999999998654 55789999999999999999999999999999999999999997542     78999999


Q ss_pred             CCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecC
Q 045821          188 RTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQS  267 (352)
Q Consensus       188 ~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~  267 (352)
                      .+++|+.++++|.++..+++++++++||++||.........+++||+.+++|+.++..+..+..+.++..+++||++||.
T Consensus       181 ~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~  260 (302)
T 2xn4_A          181 TTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGD  260 (302)
T ss_dssp             TTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCB
T ss_pred             CCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCc
Confidence            99999999999999988889999999999999876555668999999999999998766555555567889999999997


Q ss_pred             CC----CeEEEEeCCCCceEEcc-CCCCCcCCCCceEEEeCCEE
Q 045821          268 SG----TKLMMWQKESREWSPVG-RLSTLLTRPPCKLVAIGKTI  306 (352)
Q Consensus       268 ~~----~~v~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~i  306 (352)
                      .+    +++++||+++++|+.++ .+|.  .|..+++++++++|
T Consensus       261 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~--~r~~~~~~~~~~~i  302 (302)
T 2xn4_A          261 DGSCNLASVEYYNPTTDKWTVVSSCMST--GRSYAGVTVIDKRL  302 (302)
T ss_dssp             CSSSBCCCEEEEETTTTEEEECSSCCSS--CCBSCEEEEEEC--
T ss_pred             CCCcccccEEEEcCCCCeEEECCcccCc--ccccceEEEecccC
Confidence            64    57999999999999997 6765  57778888888765

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=2.2e-39  Score=287.46  Aligned_cols=257  Identities=18%  Similarity=0.255  Sum_probs=216.8

Q ss_pred             ccchhhhhhhhhhcccccChhhHHHHhhCCCC--CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcce
Q 045821           36 RYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLD--ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGM  113 (352)
Q Consensus        36 ~~~~~l~~v~k~W~~l~~s~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~  113 (352)
                      .+...+....++|..+...|   ..|..+...  ++.||++||.+......++.||+  .+++|..++++|   .+|..+
T Consensus        24 ~~~~~~d~~~~~W~~~~~~p---~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~--~~~~W~~~~~~p---~~r~~~   95 (306)
T 3ii7_A           24 QSCRYFNPKDYSWTDIRCPF---EKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNV--VKDSWYSKLGPP---TPRDSL   95 (306)
T ss_dssp             TSEEEEETTTTEEEECCCCS---CCCBSCEEEEETTEEEEECCBSSSBCCEEEEEET--TTTEEEEEECCS---SCCBSC
T ss_pred             ceEEEecCCCCCEecCCCCC---cccceeEEEEECCEEEEEeCCCCCCcceEEEEeC--CCCeEEECCCCC---ccccce
Confidence            44566777788999885444   345555443  89999999986333456899999  999999999988   789999


Q ss_pred             EEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCC-------CceEEEe
Q 045821          114 GFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDT-------HSWDVYD  186 (352)
Q Consensus       114 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~-------~~v~~yd  186 (352)
                      +++.++++||++||.+......+++++||+.+++|+.++++|.+|..|+++.++++||++||....       +++++||
T Consensus        96 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd  175 (306)
T 3ii7_A           96 AACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYD  175 (306)
T ss_dssp             EEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEE
T ss_pred             eEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeC
Confidence            999999999999998744467899999999999999999999999999999999999999996432       7799999


Q ss_pred             CCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEec
Q 045821          187 PRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQ  266 (352)
Q Consensus       187 ~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg  266 (352)
                      +.+++|+.+++++.++..++++.++++||++||.........+++||+.+++|+.++..+..+..+.++..+++||++||
T Consensus       176 ~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG  255 (306)
T 3ii7_A          176 PATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAG  255 (306)
T ss_dssp             TTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEEEC
T ss_pred             CCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEEeC
Confidence            99999999999999999999999999999999987655566899999999999999876655555666788999999999


Q ss_pred             CCC----CeEEEEeCCCCceEEccCCCCCcCCCCceEEEe
Q 045821          267 SSG----TKLMMWQKESREWSPVGRLSTLLTRPPCKLVAI  302 (352)
Q Consensus       267 ~~~----~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~  302 (352)
                      ..+    +++++||+++++|+.++.+|.  .+..++++.+
T Consensus       256 ~~~~~~~~~~~~yd~~~~~W~~~~~~~~--~r~~~~~~~~  293 (306)
T 3ii7_A          256 FQGVGRLGHILEYNTETDKWVANSKVRA--FPVTSCLICV  293 (306)
T ss_dssp             BCSSSBCCEEEEEETTTTEEEEEEEEEC--CSCTTCEEEE
T ss_pred             cCCCeeeeeEEEEcCCCCeEEeCCCccc--ccceeEEEEE
Confidence            754    689999999999999998876  4555555544

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=1.9e-39  Score=289.00  Aligned_cols=264  Identities=17%  Similarity=0.235  Sum_probs=217.2

Q ss_pred             cchhhhhhhhhhcccccChhhHHHHhhCC--CCCCEEEEEEec-----CCCC--ceeEEEecCCCCCCCeeEeccCCCcc
Q 045821           37 YHAVLKCVSSRWRGLLHSEEWCAYRRKHN--LDETWIYAFCRD-----NKLE--RVCCYVLDPNSTRRSWKMIHELPART  107 (352)
Q Consensus        37 ~~~~l~~v~k~W~~l~~s~~~~~~~~~~~--~~~~~l~~~gg~-----~~~~--~~~~~~~d~~~~~~~w~~~~~~~~~~  107 (352)
                      ....+....++|.. ...|. +..|..++  ..++.||++||.     ....  ...++.||+  .+++|+.++++|   
T Consensus        14 ~~~~yd~~~~~W~~-~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~--~~~~W~~~~~~p---   86 (315)
T 4asc_A           14 GAVAYDPAANECYC-ASLSS-QVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDH--LDSEWLGMPPLP---   86 (315)
T ss_dssp             EEEEEETTTTEEEE-EECCC-CSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEET--TTTEEEECCCBS---
T ss_pred             ceEEECCCCCeEec-CCCCC-CCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecC--CCCeEEECCCCC---
Confidence            34556667788975 22221 22344443  338999999995     1122  234889999  999999999988   


Q ss_pred             cCCcceEEEEECCEEEEEeCCC--CCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCC----Cc
Q 045821          108 LRRKGMGFEVLGKNAYLLGGCG--WSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDT----HS  181 (352)
Q Consensus       108 ~~~~~~~~~~~~~~iyv~GG~~--~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~----~~  181 (352)
                      .+|..|+++.++++||++||.+  ......+++++||+.+++|+.++++|.+|..|+++.++++||++||....    ++
T Consensus        87 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  166 (315)
T 4asc_A           87 SPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNK  166 (315)
T ss_dssp             SCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCC
T ss_pred             cchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccce
Confidence            7899999999999999999964  22366889999999999999999999999999999999999999998432    89


Q ss_pred             eEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEE
Q 045821          182 WDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDAL  261 (352)
Q Consensus       182 v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l  261 (352)
                      +++||+.+++|+.++++|.++..+++++++++||++||.........+++||+.+++|+.+++.+..+..+.++..+++|
T Consensus       167 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l  246 (315)
T 4asc_A          167 MCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTL  246 (315)
T ss_dssp             EEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEE
T ss_pred             EEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEECCEE
Confidence            99999999999999999999999999999999999999887666679999999999999998766566556667889999


Q ss_pred             EEEecCCC-------------CeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEcC
Q 045821          262 YVLDQSSG-------------TKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGK  311 (352)
Q Consensus       262 ~~~gg~~~-------------~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG  311 (352)
                      |++||..+             +++++||+++++|+++.  +.  +|..+++++++++||++..
T Consensus       247 ~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~--~~--~r~~~~~~~~~~~l~v~~~  305 (315)
T 4asc_A          247 YAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVL--RE--IAYAAGATFLPVRLNVLRL  305 (315)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEE--SC--SSCCSSCEEEEEEECGGGS
T ss_pred             EEECCccccCcCCccccccccCcEEEecCCCChhhhhc--cC--CcCccceEEeCCEEEEEEe
Confidence            99999632             47899999999999993  22  4777888889999999864

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=5.5e-39  Score=285.17  Aligned_cols=257  Identities=21%  Similarity=0.328  Sum_probs=216.2

Q ss_pred             ccccchhhhhhhhhhcccccChhhHHHHhhCCCC--CCEEEEEEecC----CCC-ceeEEEecCCCCCCCeeEeccCCCc
Q 045821           34 PRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLD--ETWIYAFCRDN----KLE-RVCCYVLDPNSTRRSWKMIHELPAR  106 (352)
Q Consensus        34 p~~~~~~l~~v~k~W~~l~~s~~~~~~~~~~~~~--~~~l~~~gg~~----~~~-~~~~~~~d~~~~~~~w~~~~~~~~~  106 (352)
                      +..+...+....+.|..+...|   ..|..+.+.  ++.||++||.+    ... ...++.||+  .+++|+.++++|  
T Consensus        37 ~~~~~~~~d~~~~~W~~~~~~p---~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~--~~~~W~~~~~~p--  109 (308)
T 1zgk_A           37 SLSYLEAYNPSNGTWLRLADLQ---VPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNP--MTNQWSPCAPMS--  109 (308)
T ss_dssp             BCCCEEEEETTTTEEEECCCCS---SCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEET--TTTEEEECCCCS--
T ss_pred             CcceEEEEcCCCCeEeECCCCC---cccccceEEEECCEEEEECCCcCCCCCCeecceEEEECC--CCCeEeECCCCC--
Confidence            3445677777889999984433   345555433  89999999972    211 245889999  999999999988  


Q ss_pred             ccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCC---CceE
Q 045821          107 TLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDT---HSWD  183 (352)
Q Consensus       107 ~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~---~~v~  183 (352)
                       .+|..++++.++++||++||.... ...+++++||+.+++|+.++++|.+|..|+++.++++||++||....   ++++
T Consensus       110 -~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~  187 (308)
T 1zgk_A          110 -VPRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAE  187 (308)
T ss_dssp             -SCCBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEE
T ss_pred             -cCccccEEEEECCEEEEEcCCCCC-cccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEE
Confidence             689999999999999999997654 45789999999999999999999999999999999999999998754   8899


Q ss_pred             EEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEE
Q 045821          184 VYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYV  263 (352)
Q Consensus       184 ~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~  263 (352)
                      +||+.+++|+.++++|.++..+++++++++||++||........++++||+.+++|+.++..+..+....++..+++||+
T Consensus       188 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v  267 (308)
T 1zgk_A          188 CYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYV  267 (308)
T ss_dssp             EEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEE
T ss_pred             EEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEE
Confidence            99999999999999999999898999999999999988666667999999999999999876655555566788999999


Q ss_pred             EecCCC----CeEEEEeCCCCceEEccCCCCCcCCCCceEEE
Q 045821          264 LDQSSG----TKLMMWQKESREWSPVGRLSTLLTRPPCKLVA  301 (352)
Q Consensus       264 ~gg~~~----~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~  301 (352)
                      +||..+    +++++||+++++|++++.+|.  .|..+++++
T Consensus       268 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~--~r~~~~~~~  307 (308)
T 1zgk_A          268 LGGYDGHTFLDSVECYDPDTDTWSEVTRMTS--GRSGVGVAV  307 (308)
T ss_dssp             ECCBCSSCBCCEEEEEETTTTEEEEEEECSS--CCBSCEEEE
T ss_pred             EcCcCCCcccceEEEEcCCCCEEeecCCCCC--CcccceeEe
Confidence            999754    689999999999999999887  466666554

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=4.4e-39  Score=287.09  Aligned_cols=262  Identities=16%  Similarity=0.259  Sum_probs=214.3

Q ss_pred             chhhhhhhhhhcccccChhhHHHHhhCC--CCCCEEEEEEecCC--CC-----ceeEEEecCCCCCCCeeEeccCCCccc
Q 045821           38 HAVLKCVSSRWRGLLHSEEWCAYRRKHN--LDETWIYAFCRDNK--LE-----RVCCYVLDPNSTRRSWKMIHELPARTL  108 (352)
Q Consensus        38 ~~~l~~v~k~W~~l~~s~~~~~~~~~~~--~~~~~l~~~gg~~~--~~-----~~~~~~~d~~~~~~~w~~~~~~~~~~~  108 (352)
                      ...+....++|... ..+ .+.+|..++  ..++.||++||...  ..     ...++.||+  .+++|.+++++|   .
T Consensus        26 ~~~yd~~~~~W~~~-~~~-~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~--~~~~W~~~~~~p---~   98 (318)
T 2woz_A           26 AVAYDPMENECYLT-ALA-EQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDN--VSSEWVGLPPLP---S   98 (318)
T ss_dssp             EEEEETTTTEEEEE-EEC-TTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEET--TTTEEEECSCBS---S
T ss_pred             eEEECCCCCceecc-cCC-ccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeC--CCCcEEECCCCC---c
Confidence            34566677889873 211 112333333  33899999999521  11     123889999  999999999888   6


Q ss_pred             CCcceEEEEECCEEEEEeCCCC-CCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCC----CceE
Q 045821          109 RRKGMGFEVLGKNAYLLGGCGW-SEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDT----HSWD  183 (352)
Q Consensus       109 ~~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~----~~v~  183 (352)
                      +|..|+++.++++||++||... .....+++++||+.+++|+.++++|.+|..|+++.++++||++||....    ++++
T Consensus        99 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  178 (318)
T 2woz_A           99 ARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVF  178 (318)
T ss_dssp             CBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEE
T ss_pred             cccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEE
Confidence            7999999999999999999753 2356789999999999999999999999999999999999999997432    8899


Q ss_pred             EEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEE
Q 045821          184 VYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYV  263 (352)
Q Consensus       184 ~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~  263 (352)
                      +||+.+++|+.++++|.++..+++++++++||++||.........+++||+.+++|+.++..+..+..+.++..+++||+
T Consensus       179 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v  258 (318)
T 2woz_A          179 IYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYA  258 (318)
T ss_dssp             EEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEETTEEEE
T ss_pred             EEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEECCEEEE
Confidence            99999999999999999998888999999999999987655567999999999999999876665555566788999999


Q ss_pred             EecCCC-------------CeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEc
Q 045821          264 LDQSSG-------------TKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIG  310 (352)
Q Consensus       264 ~gg~~~-------------~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~g  310 (352)
                      +||...             +++++||+++++|+++  +|.  .+..++++.++++||++.
T Consensus       259 ~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~--~r~~~~~~~~~~~iyi~~  314 (318)
T 2woz_A          259 IGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM--LKE--IRYASGASCLATRLNLFK  314 (318)
T ss_dssp             ECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE--ESC--CGGGTTCEEEEEEEEGGG
T ss_pred             ECCeeccCCCCceeccceeeeEEEEeCCCCEehhh--ccc--ccccccceeeCCEEEEEE
Confidence            999642             5799999999999999  443  466778888999999875

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=1.1e-38  Score=289.10  Aligned_cols=258  Identities=17%  Similarity=0.245  Sum_probs=202.7

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCC-C---CCCCCCCeEEEEEC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGC-G---WSEDATSEVYCYDA  143 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~-~---~~~~~~~~~~~~d~  143 (352)
                      ++.||++||.+.   ..++.||+...+++|..++++|.  .+|.++++++++++||++||. +   ......+++++||+
T Consensus        19 ~~~iyv~GG~~~---~~~~~~d~~~~~~~W~~~~~~p~--~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~   93 (357)
T 2uvk_A           19 NDTVYIGLGSAG---TAWYKLDTQAKDKKWTALAAFPG--GPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNP   93 (357)
T ss_dssp             TTEEEEECGGGT---TCEEEEETTSSSCCEEECCCCTT--CCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEET
T ss_pred             CCEEEEEeCcCC---CeEEEEccccCCCCeeECCCCCC--CcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeC
Confidence            899999999743   36889999222599999998873  368999999999999999997 2   22345789999999


Q ss_pred             CCCeeEecCCCC-CcceeeeeEEECCEEEEEeCCCC-------------------------------------CCceEEE
Q 045821          144 SMNTWTDAAPMS-TARCYFPCGVLNQKIYCIGGLGD-------------------------------------THSWDVY  185 (352)
Q Consensus       144 ~t~~W~~~~~~~-~~r~~~~~~~~~~~iyv~gG~~~-------------------------------------~~~v~~y  185 (352)
                      .+++|+.+++++ .+|..|+++.++++||++||...                                     .+++++|
T Consensus        94 ~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y  173 (357)
T 2uvk_A           94 KTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSF  173 (357)
T ss_dssp             TTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEE
T ss_pred             CCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEE
Confidence            999999999998 89999999999999999999752                                     1689999


Q ss_pred             eCCCCcEEEecCCCCcccc-eeEEEECCEEEEEccCCCCC-CceEEEEEeC--CCCceeecCCCCCC-CCCCc-EEEECC
Q 045821          186 DPRTNNWKLHTEPNIFTEI-EDSFVMDGKIYIRCSASAAT-SHVCALVYEP--STDSWLHADANMAS-GWRGP-AVVVDD  259 (352)
Q Consensus       186 d~~t~~W~~~~~~~~~~~~-~~~~~~~g~iyv~GG~~~~~-~~~~i~~yd~--~~~~W~~~~~~~~~-~~~~~-~~~~~~  259 (352)
                      |+.+++|+.++++|.++.. +++++++++||++||..... ....+++||+  .+++|+.++..+.+ .+..+ ++..++
T Consensus       174 d~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~  253 (357)
T 2uvk_A          174 DPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISND  253 (357)
T ss_dssp             ETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETT
T ss_pred             eCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECC
Confidence            9999999999988876655 77888999999999876432 2347888876  89999999764333 23333 678899


Q ss_pred             EEEEEecCCC---------------------CeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEcCCc-----
Q 045821          260 ALYVLDQSSG---------------------TKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGC-----  313 (352)
Q Consensus       260 ~l~~~gg~~~---------------------~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~-----  313 (352)
                      +||++||...                     .++++||+++++|++++.+|.  .|..++++..+++|||+||.+     
T Consensus       254 ~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~i~v~GG~~~~~~~  331 (357)
T 2uvk_A          254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQ--GRAYGVSLPWNNSLLIIGGETAGGKA  331 (357)
T ss_dssp             EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSS--CCBSSEEEEETTEEEEEEEECGGGCE
T ss_pred             EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCC--CcccceeEEeCCEEEEEeeeCCCCCE
Confidence            9999999531                     368999999999999998887  466788888999999999953     


Q ss_pred             --eEEEEEcCCcccccceEEe
Q 045821          314 --SAVVIDVGNIGNIGGIMVS  332 (352)
Q Consensus       314 --~~~~~d~~~~~w~~~~~~~  332 (352)
                        ++++++.+.+.|.+....+
T Consensus       332 ~~~v~~l~~~~~~~~~~~~~~  352 (357)
T 2uvk_A          332 VTDSVLITVKDNKVTVQNLEH  352 (357)
T ss_dssp             EEEEEEEEC-CCSCEEEC---
T ss_pred             eeeEEEEEEcCcEeEeeeccc
Confidence              3556899999998765543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.9e-38  Score=280.63  Aligned_cols=257  Identities=21%  Similarity=0.293  Sum_probs=216.7

Q ss_pred             cccchhhhhhhhhhcccccChhhHHHHhhCCCC--CCEEEEEEecCCCC-ceeEEEecCCCCCCC---eeEeccCCCccc
Q 045821           35 RRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLD--ETWIYAFCRDNKLE-RVCCYVLDPNSTRRS---WKMIHELPARTL  108 (352)
Q Consensus        35 ~~~~~~l~~v~k~W~~l~~s~~~~~~~~~~~~~--~~~l~~~gg~~~~~-~~~~~~~d~~~~~~~---w~~~~~~~~~~~  108 (352)
                      ..+...+....+.|..+...|.   .|..++..  ++.||++||.+... ...++.||+  .+++   |+.++++|   .
T Consensus        30 ~~~~~~~d~~~~~W~~~~~~p~---~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~--~~~~~~~W~~~~~~p---~  101 (301)
T 2vpj_A           30 IDVVEKYDPKTQEWSFLPSITR---KRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDY--TADEDGVWYSVAPMN---V  101 (301)
T ss_dssp             CCCEEEEETTTTEEEECCCCSS---CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEET--TCCTTCCCEEECCCS---S
T ss_pred             eeEEEEEcCCCCeEEeCCCCCh---hhccccEEEECCEEEEEcCCCCCccCceEEEEEC--CCCCCCeeEECCCCC---C
Confidence            3445667777889998864443   45445433  89999999975333 346899999  9999   99999988   6


Q ss_pred             CCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCC---CceEEE
Q 045821          109 RRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDT---HSWDVY  185 (352)
Q Consensus       109 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~---~~v~~y  185 (352)
                      +|..++++.++++||++||.... ...+++++||+.+++|+.++++|.+|..|+++.++++||++||.+..   +++++|
T Consensus       102 ~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  180 (301)
T 2vpj_A          102 RRGLAGATTLGDMIYVSGGFDGS-RRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKY  180 (301)
T ss_dssp             CCBSCEEEEETTEEEEECCBCSS-CBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEE
T ss_pred             CccceeEEEECCEEEEEcccCCC-cccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEE
Confidence            89999999999999999998764 45789999999999999999999999999999999999999998754   899999


Q ss_pred             eCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEe
Q 045821          186 DPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLD  265 (352)
Q Consensus       186 d~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~g  265 (352)
                      |+.+++|+.++++|.++..++++.++++||++||.........+++||+.+++|+.++..+..+..+.++..+++||++|
T Consensus       181 d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G  260 (301)
T 2vpj_A          181 DPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIA  260 (301)
T ss_dssp             ETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred             eCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEc
Confidence            99999999999999999888999999999999998866656799999999999999987665555556678899999999


Q ss_pred             cCCC----CeEEEEeCCCCceEEccCCCCCcCCCCceEEEe
Q 045821          266 QSSG----TKLMMWQKESREWSPVGRLSTLLTRPPCKLVAI  302 (352)
Q Consensus       266 g~~~----~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~  302 (352)
                      |..+    +++++||+++++|+.++.+|.  .|..++++.+
T Consensus       261 G~~~~~~~~~v~~yd~~~~~W~~~~~~~~--~r~~~~~~~~  299 (301)
T 2vpj_A          261 GYDGNSLLSSIECYDPIIDSWEVVTSMGT--QRCDAGVCVL  299 (301)
T ss_dssp             CBCSSSBEEEEEEEETTTTEEEEEEEEEE--EEESCEEEEE
T ss_pred             CcCCCcccccEEEEcCCCCeEEEcCCCCc--ccccceEEEe
Confidence            9765    579999999999999998886  4666665554

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=6.1e-35  Score=264.41  Aligned_cols=224  Identities=17%  Similarity=0.212  Sum_probs=182.1

Q ss_pred             EeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECC--CCeeEecCCCC-CcceeeeeEEECCEEEEEeC
Q 045821           99 MIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDAS--MNTWTDAAPMS-TARCYFPCGVLNQKIYCIGG  175 (352)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~--t~~W~~~~~~~-~~r~~~~~~~~~~~iyv~gG  175 (352)
                      .++++|   .+|.+++++.++++||++||...     +++++||+.  +++|+.++++| .+|..|++++++++|||+||
T Consensus         2 ~l~~lP---~~r~~~~~~~~~~~iyv~GG~~~-----~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG   73 (357)
T 2uvk_A            2 VLPETP---VPFKSGTGAIDNDTVYIGLGSAG-----TAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGG   73 (357)
T ss_dssp             CSCCCS---SCCCSCEEEEETTEEEEECGGGT-----TCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECC
T ss_pred             CCCCCC---ccccceEEEEECCEEEEEeCcCC-----CeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcC
Confidence            356676   67888888889999999999653     479999998  48999999999 89999999999999999999


Q ss_pred             C-C---CC----CceEEEeCCCCcEEEecCCC-CcccceeEEEECCEEEEEccCCCCC----------------------
Q 045821          176 L-G---DT----HSWDVYDPRTNNWKLHTEPN-IFTEIEDSFVMDGKIYIRCSASAAT----------------------  224 (352)
Q Consensus       176 ~-~---~~----~~v~~yd~~t~~W~~~~~~~-~~~~~~~~~~~~g~iyv~GG~~~~~----------------------  224 (352)
                      . .   ..    +++++||+.+++|+++++++ .++..+++++++++||++||.....                      
T Consensus        74 ~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (357)
T 2uvk_A           74 IGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKIN  153 (357)
T ss_dssp             EEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhh
Confidence            8 2   11    89999999999999999887 6777777888999999999876421                      


Q ss_pred             ------------CceEEEEEeCCCCceeecCCCCCCCCC-CcEEEECCEEEEEecCCC-----CeEEEEeC--CCCceEE
Q 045821          225 ------------SHVCALVYEPSTDSWLHADANMASGWR-GPAVVVDDALYVLDQSSG-----TKLMMWQK--ESREWSP  284 (352)
Q Consensus       225 ------------~~~~i~~yd~~~~~W~~~~~~~~~~~~-~~~~~~~~~l~~~gg~~~-----~~v~~yd~--~~~~W~~  284 (352)
                                  ..+.+++||+.+++|+.+++.+..++. +.+++.+++||++||..+     .++++||+  ++++|++
T Consensus       154 ~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~  233 (357)
T 2uvk_A          154 AHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNK  233 (357)
T ss_dssp             HHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEE
T ss_pred             hhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEe
Confidence                        246899999999999999765555555 556788999999999632     57889976  8999999


Q ss_pred             ccCCCCCcCCCCceEEEeCCEEEEEcCCc-----------------------eEEEEEcCCcccccceE
Q 045821          285 VGRLSTLLTRPPCKLVAIGKTIFVIGKGC-----------------------SAVVIDVGNIGNIGGIM  330 (352)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~i~v~gG~~-----------------------~~~~~d~~~~~w~~~~~  330 (352)
                      ++.++.+..+..++++..+++|||+||..                       .+++||+++++|.+...
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~  302 (357)
T 2uvk_A          234 LAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE  302 (357)
T ss_dssp             CCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE
T ss_pred             cCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC
Confidence            99887655566777899999999999942                       46789999999987543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=100.00  E-value=1.7e-34  Score=282.12  Aligned_cols=245  Identities=15%  Similarity=0.184  Sum_probs=196.2

Q ss_pred             CCCEEEEEEecCCCCceeEEEecCCCCCCCeeEec-cCC--CcccCCcceEEEEE--CCEEEEEeCCCCCCCCCCeEEEE
Q 045821           67 DETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIH-ELP--ARTLRRKGMGFEVL--GKNAYLLGGCGWSEDATSEVYCY  141 (352)
Q Consensus        67 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~-~~~--~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~  141 (352)
                      .++.||++||.+......++.||+  .+++|..++ ++|  ..+.+|.+|+++++  +++||++||.+......+++++|
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~--~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~y  473 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSI--HYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIF  473 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEE--CSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEEC--CCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEE
Confidence            488999999975533456899999  999999998 632  12278999999999  99999999987764578899999


Q ss_pred             ECCCCeeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecC---CCCcccceeEEEEC---CEE
Q 045821          142 DASMNTWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTE---PNIFTEIEDSFVMD---GKI  214 (352)
Q Consensus       142 d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~---~~~~~~~~~~~~~~---g~i  214 (352)
                      |+.+++|+.++++|.+|..|+++.+ +++|||+||.....++++||+.+++|+.+++   +|.++..+++++++   ++|
T Consensus       474 d~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i  553 (695)
T 2zwa_A          474 DMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG  553 (695)
T ss_dssp             ETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred             eCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence            9999999999999999999999997 9999999998654589999999999999986   67777777777776   899


Q ss_pred             EEEccCCCC--CCceEEEEEeCCCCc------eeecCCCC-CCCCCCcEEEEC-CEEEEEecCCC-------CeEEEEeC
Q 045821          215 YIRCSASAA--TSHVCALVYEPSTDS------WLHADANM-ASGWRGPAVVVD-DALYVLDQSSG-------TKLMMWQK  277 (352)
Q Consensus       215 yv~GG~~~~--~~~~~i~~yd~~~~~------W~~~~~~~-~~~~~~~~~~~~-~~l~~~gg~~~-------~~v~~yd~  277 (352)
                      |++||....  ...+++++||+.+++      |+.+...+ ..+..+.+++.+ ++||++||..+       +++++||+
T Consensus       554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~  633 (695)
T 2zwa_A          554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDP  633 (695)
T ss_dssp             EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEET
T ss_pred             EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEEC
Confidence            999998543  345699999999999      88886533 334444456777 99999999642       57999999


Q ss_pred             CCCceEEccCCCCC------cCCCCceEEEeCC-EEEEEcCCce
Q 045821          278 ESREWSPVGRLSTL------LTRPPCKLVAIGK-TIFVIGKGCS  314 (352)
Q Consensus       278 ~~~~W~~~~~~~~~------~~~~~~~~~~~~~-~i~v~gG~~~  314 (352)
                      .+++|+.+. +|..      ..+.+++++.+++ +|||+||...
T Consensus       634 ~t~~W~~~~-~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~  676 (695)
T 2zwa_A          634 LSETLTSIP-ISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGAT  676 (695)
T ss_dssp             TTTEEEECC-CCHHHHHHSCCCCSSCEEECC---CEEEECCEEE
T ss_pred             CCCeEEEee-ccccccCCCCccceeeeEEEeCCCEEEEEeCCcc
Confidence            999999654 3221      1345566666665 9999999643

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=100.00  E-value=1.8e-31  Score=260.77  Aligned_cols=212  Identities=14%  Similarity=0.206  Sum_probs=178.7

Q ss_pred             cCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecC-C-----CCCcceeeeeEEE--CCEEEEEeCCCCC
Q 045821          108 LRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAA-P-----MSTARCYFPCGVL--NQKIYCIGGLGDT  179 (352)
Q Consensus       108 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~-~-----~~~~r~~~~~~~~--~~~iyv~gG~~~~  179 (352)
                      ..|.+++ +++++.||++||...  ...+++++||+.+++|..++ +     +|.+|..|+++.+  +++||++||....
T Consensus       387 ~rr~g~~-~~~~~~iyv~GG~~~--~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~  463 (695)
T 2zwa_A          387 NRKFGDV-DVAGNDVFYMGGSNP--YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAP  463 (695)
T ss_dssp             CCBSCEE-EECSSCEEEECCBSS--SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSST
T ss_pred             CCceeEE-EEECCEEEEECCCCC--CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCC
Confidence            4565554 448999999999866  56789999999999999988 5     7889999999999  9999999998653


Q ss_pred             ----CceEEEeCCCCcEEEecCCCCcccceeEEEE-CCEEEEEccCCCCCCceEEEEEeCCCCceeecCC---CCCCCCC
Q 045821          180 ----HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM-DGKIYIRCSASAATSHVCALVYEPSTDSWLHADA---NMASGWR  251 (352)
Q Consensus       180 ----~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~---~~~~~~~  251 (352)
                          +++++||+.+++|+.++++|.++..++++++ +++||++||.....   ++++||+.+++|+.++.   .+..+..
T Consensus       464 ~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~---~v~~yd~~t~~W~~~~~~g~~p~~r~~  540 (695)
T 2zwa_A          464 HQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP---AMLLYNVTEEIFKDVTPKDEFFQNSLV  540 (695)
T ss_dssp             TCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC---SEEEEETTTTEEEECCCSSGGGGSCCB
T ss_pred             CCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC---CEEEEECCCCceEEccCCCCCCCcccc
Confidence                8899999999999999999999999988886 99999999987544   89999999999999975   3334444


Q ss_pred             CcEEEEC---CEEEEEecCCC------CeEEEEeCCCCc------eEEccCCCCCcCCCCceEEEeC-CEEEEEcCC---
Q 045821          252 GPAVVVD---DALYVLDQSSG------TKLMMWQKESRE------WSPVGRLSTLLTRPPCKLVAIG-KTIFVIGKG---  312 (352)
Q Consensus       252 ~~~~~~~---~~l~~~gg~~~------~~v~~yd~~~~~------W~~~~~~~~~~~~~~~~~~~~~-~~i~v~gG~---  312 (352)
                      +.+++++   ++||++||...      +++++||+.+++      |+.+..+|. ..|..++++.++ ++|||+||.   
T Consensus       541 ~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~-~~R~~~~~~~~~~~~iyv~GG~~~~  619 (695)
T 2zwa_A          541 SAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPL-FQRYGSQIKYITPRKLLIVGGTSPS  619 (695)
T ss_dssp             SCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGG-GCCBSCEEEEEETTEEEEECCBCSS
T ss_pred             eeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCC-CCcccceEEEeCCCEEEEECCccCC
Confidence            4445655   89999999732      589999999999      899887643 367788888888 999999994   


Q ss_pred             ------ceEEEEEcCCcccc
Q 045821          313 ------CSAVVIDVGNIGNI  326 (352)
Q Consensus       313 ------~~~~~~d~~~~~w~  326 (352)
                            ..+++||+++++|.
T Consensus       620 ~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          620 GLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             CCCCTTTSEEEEETTTTEEE
T ss_pred             CCCCCCCeEEEEECCCCeEE
Confidence                  35788999999998

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.97  E-value=1.2e-31  Score=261.44  Aligned_cols=276  Identities=13%  Similarity=0.151  Sum_probs=203.9

Q ss_pred             chhhhhhhhhhcccccChhhHHHHhhCCCC--CCEEEEEEecCCC-------CceeEEEecCCCCCCCeeEeccCCCccc
Q 045821           38 HAVLKCVSSRWRGLLHSEEWCAYRRKHNLD--ETWIYAFCRDNKL-------ERVCCYVLDPNSTRRSWKMIHELPARTL  108 (352)
Q Consensus        38 ~~~l~~v~k~W~~l~~s~~~~~~~~~~~~~--~~~l~~~gg~~~~-------~~~~~~~~d~~~~~~~w~~~~~~~~~~~  108 (352)
                      ...+.....+|..+...|.   .....+..  ++.||++||.+..       .....+.||+  .+++|..++.++   .
T Consensus       168 ~~~~dp~~~~W~~~~~~P~---~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~--~t~~w~~~~~~~---~  239 (656)
T 1k3i_A          168 YTAPQPGLGRWGPTIDLPI---VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDP--STGIVSDRTVTV---T  239 (656)
T ss_dssp             CCCCCTTSCEEEEEEECSS---CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECT--TTCCBCCCEEEE---C
T ss_pred             cccCCCCCCeeeeeccCCC---CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeC--CCCcEEeCcccC---C
Confidence            3344455678988766554   11222222  8899999996432       1236789999  999999998887   3


Q ss_pred             CCcce--EEEE-ECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE-CCEEEEEeCC-CCC---C
Q 045821          109 RRKGM--GFEV-LGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQKIYCIGGL-GDT---H  180 (352)
Q Consensus       109 ~~~~~--~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~-~~~---~  180 (352)
                      ++..+  +++. .+++||++||...     .++++||+.+++|..+++|+.+|..|+++.+ +++||++||. +..   +
T Consensus       240 ~~~~~~~~~~~~~~g~lyv~GG~~~-----~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~  314 (656)
T 1k3i_A          240 KHDMFCPGISMDGNGQIVVTGGNDA-----KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEK  314 (656)
T ss_dssp             SCCCSSCEEEECTTSCEEEECSSST-----TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCC
T ss_pred             CCCCccccccCCCCCCEEEeCCCCC-----CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccc
Confidence            34333  3443 5899999999754     3799999999999999999999999999999 9999999994 322   8


Q ss_pred             ceEEEeCCCCcEEEec-----CCCCcccceeEEEECCEEEEEccCCCCC----CceEEEEEeCCCCceeecCCCCC----
Q 045821          181 SWDVYDPRTNNWKLHT-----EPNIFTEIEDSFVMDGKIYIRCSASAAT----SHVCALVYEPSTDSWLHADANMA----  247 (352)
Q Consensus       181 ~v~~yd~~t~~W~~~~-----~~~~~~~~~~~~~~~g~iyv~GG~~~~~----~~~~i~~yd~~~~~W~~~~~~~~----  247 (352)
                      ++++||+.+++|+.++     +++..+ ...++..++++|++||.++..    ....++.||+.+++|........    
T Consensus       315 ~~e~yd~~t~~W~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~  393 (656)
T 1k3i_A          315 NGEVYSPSSKTWTSLPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRG  393 (656)
T ss_dssp             CEEEEETTTTEEEEETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTE
T ss_pred             cceEeCCCCCcceeCCCcccccccccc-ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccc
Confidence            8999999999999984     333332 234556799999999876432    24489999999999875422111    


Q ss_pred             ---CCCCCcEEE---ECCEEEEEecCCC-------C---eEEEEeCCCCceEEcc--CCCCCcCCCCceEEEe-CCEEEE
Q 045821          248 ---SGWRGPAVV---VDDALYVLDQSSG-------T---KLMMWQKESREWSPVG--RLSTLLTRPPCKLVAI-GKTIFV  308 (352)
Q Consensus       248 ---~~~~~~~~~---~~~~l~~~gg~~~-------~---~v~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~~-~~~i~v  308 (352)
                         .+..+.+++   .+++||++||...       +   .+++||+++++|.++.  .+|.  .|..++++.+ +++||+
T Consensus       394 ~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~--~R~~~~~~~l~~g~i~v  471 (656)
T 1k3i_A          394 VAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF--ARTFHTSVVLPDGSTFI  471 (656)
T ss_dssp             ECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS--CCBSCEEEECTTSCEEE
T ss_pred             cCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC--CcccCCeEECCCCCEEE
Confidence               123344443   4899999999532       2   6899999999999986  6765  5666776666 999999


Q ss_pred             EcCC------------ceEEEEEcCCcccccce
Q 045821          309 IGKG------------CSAVVIDVGNIGNIGGI  329 (352)
Q Consensus       309 ~gG~------------~~~~~~d~~~~~w~~~~  329 (352)
                      +||.            ...++||+++++|....
T Consensus       472 ~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~  504 (656)
T 1k3i_A          472 TGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN  504 (656)
T ss_dssp             ECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred             ECCcccCcCcCCCCcccceEEEcCCCCceeecC
Confidence            9994            24678999999997643

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.96  E-value=1.5e-29  Score=246.74  Aligned_cols=261  Identities=13%  Similarity=0.063  Sum_probs=192.1

Q ss_pred             chhhhhhhhhhcccccChhhHHHHhhCC-----CCCCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcc
Q 045821           38 HAVLKCVSSRWRGLLHSEEWCAYRRKHN-----LDETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKG  112 (352)
Q Consensus        38 ~~~l~~v~k~W~~l~~s~~~~~~~~~~~-----~~~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~  112 (352)
                      ...+....+.|+.+...+   ..|..++     ..++.||++||.+..   .+++||+  .+++|.++++|+   .+|.+
T Consensus       221 ~~~yd~~t~~w~~~~~~~---~~~~~~~~~~~~~~~g~lyv~GG~~~~---~v~~yd~--~t~~W~~~~~~~---~~R~~  289 (656)
T 1k3i_A          221 TSSWDPSTGIVSDRTVTV---TKHDMFCPGISMDGNGQIVVTGGNDAK---KTSLYDS--SSDSWIPGPDMQ---VARGY  289 (656)
T ss_dssp             EEEECTTTCCBCCCEEEE---CSCCCSSCEEEECTTSCEEEECSSSTT---CEEEEEG--GGTEEEECCCCS---SCCSS
T ss_pred             EEEEeCCCCcEEeCcccC---CCCCCccccccCCCCCCEEEeCCCCCC---ceEEecC--cCCceeECCCCC---ccccc
Confidence            344556677888874333   2333333     238999999997432   6888999  999999999988   68999


Q ss_pred             eEEEEE-CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecC-----CCCCcceeeeeEEECCEEEEEeCCCCC-------
Q 045821          113 MGFEVL-GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAA-----PMSTARCYFPCGVLNQKIYCIGGLGDT-------  179 (352)
Q Consensus       113 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~-----~~~~~r~~~~~~~~~~~iyv~gG~~~~-------  179 (352)
                      ++++.+ +++||++||........+++++||+.+++|+.++     +++.++. ++++..++++|++||.+..       
T Consensus       290 ~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~-~~~~~~~~~iyv~Gg~~g~~~~~~~~  368 (656)
T 1k3i_A          290 QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK-QGLYRSDNHAWLFGWKKGSVFQAGPS  368 (656)
T ss_dssp             CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT-TGGGTTTCSCCEEECGGGCEEECCSS
T ss_pred             cceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc-cceeecCCceEEEECCCCcEEEecCc
Confidence            999999 9999999995443356789999999999999984     4444443 3455578999999987532       


Q ss_pred             CceEEEeCCCCcEEEecCCCC-------cccceeEEE---ECCEEEEEccCCCC---CCce---EEEEEeCCCCceeecC
Q 045821          180 HSWDVYDPRTNNWKLHTEPNI-------FTEIEDSFV---MDGKIYIRCSASAA---TSHV---CALVYEPSTDSWLHAD  243 (352)
Q Consensus       180 ~~v~~yd~~t~~W~~~~~~~~-------~~~~~~~~~---~~g~iyv~GG~~~~---~~~~---~i~~yd~~~~~W~~~~  243 (352)
                      ..++.||+.++.|........       .+..+.++.   .+++||++||....   ....   .+++||+.+++|..+.
T Consensus       369 ~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~  448 (656)
T 1k3i_A          369 TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA  448 (656)
T ss_dssp             SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC
T ss_pred             cceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc
Confidence            789999999999875432211       122333332   48999999996431   1222   7889999999999886


Q ss_pred             --CCCCCCCCCcEEEE-CCEEEEEecCCC----------CeEEEEeCCCCceEEccCCCCCcCCCCceEEEe--CCEEEE
Q 045821          244 --ANMASGWRGPAVVV-DDALYVLDQSSG----------TKLMMWQKESREWSPVGRLSTLLTRPPCKLVAI--GKTIFV  308 (352)
Q Consensus       244 --~~~~~~~~~~~~~~-~~~l~~~gg~~~----------~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~--~~~i~v  308 (352)
                        ..+..+..+.++++ +++||++||...          .++++||+++++|+.++.++.  .|..++++.+  +++||+
T Consensus       449 ~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~--~R~~hs~a~ll~dg~v~v  526 (656)
T 1k3i_A          449 SNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSI--VRVYHSISLLLPDGRVFN  526 (656)
T ss_dssp             TTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSS--CCCTTEEEEECTTSCEEE
T ss_pred             cCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCC--ccccccHhhcCCCcEEEe
Confidence              43333334444566 999999999541          579999999999999998876  4666666666  999999


Q ss_pred             EcCC
Q 045821          309 IGKG  312 (352)
Q Consensus       309 ~gG~  312 (352)
                      +||.
T Consensus       527 ~GG~  530 (656)
T 1k3i_A          527 GGGG  530 (656)
T ss_dssp             EECC
T ss_pred             cCCC
Confidence            9995

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.94  E-value=3.9e-07  Score=83.94  Aligned_cols=276  Identities=16%  Similarity=0.129  Sum_probs=144.0

Q ss_pred             CCCccCCCcHHHHHHhhccCccccchhhhhhhhhhcccccChhhHHHHh-------------------------------
Q 045821           14 VVPLISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCAYRR-------------------------------   62 (352)
Q Consensus        14 ~~~~~~~lp~dl~~~il~r~p~~~~~~l~~v~k~W~~l~~s~~~~~~~~-------------------------------   62 (352)
                      ....+..||+|++..||++|+..++.++..|||+|+.++.++.+-+...                               
T Consensus        15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~   94 (445)
T 2ovr_B           15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYI   94 (445)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHH
T ss_pred             cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHHHh
Confidence            4556889999999999999999999999999999987765542211000                               


Q ss_pred             ------------hC-------CCC---------CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceE
Q 045821           63 ------------KH-------NLD---------ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMG  114 (352)
Q Consensus        63 ------------~~-------~~~---------~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~  114 (352)
                                  ..       +..         ++..++.|+.  .+  .+.++|.  .+..-  +..+..   ......
T Consensus        95 ~~~~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~--dg--~i~vwd~--~~~~~--~~~~~~---h~~~v~  163 (445)
T 2ovr_B           95 RQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSD--DN--TLKVWSA--VTGKC--LRTLVG---HTGGVW  163 (445)
T ss_dssp             HHHHHHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEET--TS--CEEEEET--TTCCE--EEECCC---CSSCEE
T ss_pred             hhhhhhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEEC--CC--cEEEEEC--CCCcE--EEEEcC---CCCCEE
Confidence                        00       000         1112222221  12  2334465  44432  222221   111122


Q ss_pred             EEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEE
Q 045821          115 FEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKL  194 (352)
Q Consensus       115 ~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~  194 (352)
                      .....+.+++.|+.+      ..+.+||..+++-...-....  ..-....+++..++.|+.+  ..+.+||..+.+-..
T Consensus       164 ~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~~~~l~s~s~d--g~i~~wd~~~~~~~~  233 (445)
T 2ovr_B          164 SSQMRDNIIISGSTD------RTLKVWNAETGECIHTLYGHT--STVRCMHLHEKRVVSGSRD--ATLRVWDIETGQCLH  233 (445)
T ss_dssp             EEEEETTEEEEEETT------SCEEEEETTTTEEEEEECCCS--SCEEEEEEETTEEEEEETT--SEEEEEESSSCCEEE
T ss_pred             EEEecCCEEEEEeCC------CeEEEEECCcCcEEEEECCCC--CcEEEEEecCCEEEEEeCC--CEEEEEECCCCcEEE
Confidence            233334555666543      458889998876332211111  1112222344455666655  678999998775332


Q ss_pred             ecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEE
Q 045821          195 HTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMM  274 (352)
Q Consensus       195 ~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~  274 (352)
                      .-  ........++..++..++.|+.++     .+..||..+.+-...-.  .+......+..++..++.|+.++ .+.+
T Consensus       234 ~~--~~~~~~v~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~l~~~~~d~-~i~i  303 (445)
T 2ovr_B          234 VL--MGHVAAVRCVQYDGRRVVSGAYDF-----MVKVWDPETETCLHTLQ--GHTNRVYSLQFDGIHVVSGSLDT-SIRV  303 (445)
T ss_dssp             EE--ECCSSCEEEEEECSSCEEEEETTS-----CEEEEEGGGTEEEEEEC--CCSSCEEEEEECSSEEEEEETTS-CEEE
T ss_pred             EE--cCCcccEEEEEECCCEEEEEcCCC-----EEEEEECCCCcEeEEec--CCCCceEEEEECCCEEEEEeCCC-eEEE
Confidence            21  111112223444777777766553     47778876654322111  11111123445777777777766 8999


Q ss_pred             EeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEcCCc-eEEEEEcCCcc
Q 045821          275 WQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGC-SAVVIDVGNIG  324 (352)
Q Consensus       275 yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~-~~~~~d~~~~~  324 (352)
                      ||..+++-...  +... .....++...++ .++.|+.+ .+.+||+.+..
T Consensus       304 ~d~~~~~~~~~--~~~~-~~~v~~~~~~~~-~l~~~~~dg~i~vwd~~~~~  350 (445)
T 2ovr_B          304 WDVETGNCIHT--LTGH-QSLTSGMELKDN-ILVSGNADSTVKIWDIKTGQ  350 (445)
T ss_dssp             EETTTCCEEEE--ECCC-CSCEEEEEEETT-EEEEEETTSCEEEEETTTCC
T ss_pred             EECCCCCEEEE--EcCC-cccEEEEEEeCC-EEEEEeCCCeEEEEECCCCc
Confidence            99987654322  1110 111223333344 44555444 56689987643

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.92  E-value=3.1e-07  Score=84.94  Aligned_cols=40  Identities=23%  Similarity=0.268  Sum_probs=36.7

Q ss_pred             CCccCCCcHHHHHHhhccCccccchhhhhhhhhhcccccC
Q 045821           15 VPLISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHS   54 (352)
Q Consensus        15 ~~~~~~lp~dl~~~il~r~p~~~~~~l~~v~k~W~~l~~s   54 (352)
                      ...+..||+|++.+||+.|+.+++.++..|||+|+.++.+
T Consensus        12 ~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           12 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred             cCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence            4467789999999999999999999999999999998876

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.78  E-value=5.5e-07  Score=82.74  Aligned_cols=277  Identities=14%  Similarity=0.051  Sum_probs=146.0

Q ss_pred             CCccCCCcHH----HHHHhhccCccccchhhhhhhhhhcccccChhhHH-------------------------------
Q 045821           15 VPLISGLPDD----IALFCLARVPRRYHAVLKCVSSRWRGLLHSEEWCA-------------------------------   59 (352)
Q Consensus        15 ~~~~~~lp~d----l~~~il~r~p~~~~~~l~~v~k~W~~l~~s~~~~~-------------------------------   59 (352)
                      ...+..||+|    ++..||+.|+..++.++..|||+|+.++.++.+=+                               
T Consensus         8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   87 (435)
T 1p22_A            8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKP   87 (435)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGGCC----
T ss_pred             cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhhhhccCC
Confidence            3466789999    99999999999999999999999987654332100                               


Q ss_pred             ------------------------HHh--hCC-----------CC---------CCEEEEEEecCCCCceeEEEecCCCC
Q 045821           60 ------------------------YRR--KHN-----------LD---------ETWIYAFCRDNKLERVCCYVLDPNST   93 (352)
Q Consensus        60 ------------------------~~~--~~~-----------~~---------~~~l~~~gg~~~~~~~~~~~~d~~~~   93 (352)
                                              ...  ..+           ..         ++..++.|+.  .+  .+.++|.  .
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~g~~--dg--~i~iwd~--~  161 (435)
T 1p22_A           88 PDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLR--DN--TIKIWDK--N  161 (435)
T ss_dssp             -----CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEECCCSSCCCEEEEECCSSEEEEEES--SS--CEEEEES--S
T ss_pred             CCCCCCchhhHHhhhhhhhcchhHHHhhhccCCccceEEecccCCCCcEEEEEECCCEEEEEeC--CC--eEEEEeC--C
Confidence                                    000  000           00         1223333332  12  2444566  5


Q ss_pred             CCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEE
Q 045821           94 RRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCI  173 (352)
Q Consensus        94 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~  173 (352)
                      +..-...  +.   ...........++.+++.|+.+      ..+.+||..+++-...-  ......-....+++..++.
T Consensus       162 ~~~~~~~--~~---~h~~~v~~l~~~~~~l~sg~~d------g~i~vwd~~~~~~~~~~--~~h~~~v~~l~~~~~~l~s  228 (435)
T 1p22_A          162 TLECKRI--LT---GHTGSVLCLQYDERVIITGSSD------STVRVWDVNTGEMLNTL--IHHCEAVLHLRFNNGMMVT  228 (435)
T ss_dssp             SCCEEEE--EC---CCSSCEEEEECCSSEEEEEETT------SCEEEEESSSCCEEEEE--CCCCSCEEEEECCTTEEEE
T ss_pred             CCeEEEE--Ec---CCCCcEEEEEECCCEEEEEcCC------CeEEEEECCCCcEEEEE--cCCCCcEEEEEEcCCEEEE
Confidence            5443222  21   1112223344467777777643      45888998877532211  1111112222334556666


Q ss_pred             eCCCCCCceEEEeCCCCcEEEe-cCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCC
Q 045821          174 GGLGDTHSWDVYDPRTNNWKLH-TEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRG  252 (352)
Q Consensus       174 gG~~~~~~v~~yd~~t~~W~~~-~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~  252 (352)
                      |+.+  ..+.+||..+..-... ...........++..+++..+.|+.++     .+..||..+.+-...-.  ......
T Consensus       229 ~s~d--g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~--~~~~~v  299 (435)
T 1p22_A          229 CSKD--RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDR-----TIKVWNTSTCEFVRTLN--GHKRGI  299 (435)
T ss_dssp             EETT--SCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTS-----EEEEEETTTCCEEEEEE--CCSSCE
T ss_pred             eeCC--CcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCC-----eEEEEECCcCcEEEEEc--CCCCcE
Confidence            6655  6788999887642211 111111112223344666666665542     58888987765432211  111111


Q ss_pred             cEEEECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEcCCce-EEEEEcCCcc
Q 045821          253 PAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCS-AVVIDVGNIG  324 (352)
Q Consensus       253 ~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~-~~~~d~~~~~  324 (352)
                      ..+..++.+++.|+.++ .+.+||..+++-...  +.. ......++ ..+++.++.|+.+. +.+||+....
T Consensus       300 ~~~~~~~~~l~~g~~dg-~i~iwd~~~~~~~~~--~~~-h~~~v~~~-~~~~~~l~sg~~dg~i~vwd~~~~~  367 (435)
T 1p22_A          300 ACLQYRDRLVVSGSSDN-TIRLWDIECGACLRV--LEG-HEELVRCI-RFDNKRIVSGAYDGKIKVWDLVAAL  367 (435)
T ss_dssp             EEEEEETTEEEEEETTS-CEEEEETTTCCEEEE--ECC-CSSCEEEE-ECCSSEEEEEETTSCEEEEEHHHHT
T ss_pred             EEEEeCCCEEEEEeCCC-eEEEEECCCCCEEEE--EeC-CcCcEEEE-EecCCEEEEEeCCCcEEEEECCCCC
Confidence            23445677777777666 899999987653322  111 01111223 33666666666554 6689976543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.57  E-value=5.8e-05  Score=66.55  Aligned_cols=231  Identities=10%  Similarity=0.049  Sum_probs=136.1

Q ss_pred             EEEEEecC-CCCceeEEEecCCCCCCCeeEeccC--CCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCe
Q 045821           71 IYAFCRDN-KLERVCCYVLDPNSTRRSWKMIHEL--PARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNT  147 (352)
Q Consensus        71 l~~~gg~~-~~~~~~~~~~d~~~~~~~w~~~~~~--~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~  147 (352)
                      +|++...+ ..+.-.+.++|+  .++++...-..  ...........++..++++|+...      ....+.++|+.+.+
T Consensus         4 ~~v~neg~~g~~~~~l~~~d~--~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~------~~~~v~viD~~t~~   75 (328)
T 3dsm_A            4 LFITNEGNFQYSNATLSYYDP--ATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVN------NSHVIFAIDINTFK   75 (328)
T ss_dssp             EEEEECCCTTSCCBEEEEEET--TTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEG------GGTEEEEEETTTCC
T ss_pred             EEEEecCCCCCCCceEEEEEC--CCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEc------CCCEEEEEECcccE
Confidence            66664332 222345667799  88876542110  000122333556667999999864      24679999999887


Q ss_pred             e-EecCCCCCcceeeeeEE-ECCEEEEEeCCCCCCceEEEeCCCCcEE-EecCCCCc----ccceeEEEECCEEEEEccC
Q 045821          148 W-TDAAPMSTARCYFPCGV-LNQKIYCIGGLGDTHSWDVYDPRTNNWK-LHTEPNIF----TEIEDSFVMDGKIYIRCSA  220 (352)
Q Consensus       148 W-~~~~~~~~~r~~~~~~~-~~~~iyv~gG~~~~~~v~~yd~~t~~W~-~~~~~~~~----~~~~~~~~~~g~iyv~GG~  220 (352)
                      - ..++....|+   .++. -++++|+....+  ..+.++|+.+.+-. .++ ....    ..-...+..++++|+..-.
T Consensus        76 ~~~~i~~~~~p~---~i~~~~~g~lyv~~~~~--~~v~~iD~~t~~~~~~i~-~g~~~~~~~~p~~i~~~~~~lyv~~~~  149 (328)
T 3dsm_A           76 EVGRITGFTSPR---YIHFLSDEKAYVTQIWD--YRIFIINPKTYEITGYIE-CPDMDMESGSTEQMVQYGKYVYVNCWS  149 (328)
T ss_dssp             EEEEEECCSSEE---EEEEEETTEEEEEEBSC--SEEEEEETTTTEEEEEEE-CTTCCTTTCBCCCEEEETTEEEEEECT
T ss_pred             EEEEcCCCCCCc---EEEEeCCCeEEEEECCC--CeEEEEECCCCeEEEEEE-cCCccccCCCcceEEEECCEEEEEcCC
Confidence            5 4454333332   2333 578999988543  78999999998754 233 1110    0222344478999998421


Q ss_pred             CCCCCceEEEEEeCCCCceee-cCCCCCCCCCCcEEEECCEEEEEecCC---------CCeEEEEeCCCCceEEccCCCC
Q 045821          221 SAATSHVCALVYEPSTDSWLH-ADANMASGWRGPAVVVDDALYVLDQSS---------GTKLMMWQKESREWSPVGRLST  290 (352)
Q Consensus       221 ~~~~~~~~i~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~l~~~gg~~---------~~~v~~yd~~~~~W~~~~~~~~  290 (352)
                          ....+.++|+.+++... ++.. . .-....+.-+|++|+.....         ...++++|+++++....-.++.
T Consensus       150 ----~~~~v~viD~~t~~~~~~i~~g-~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~  223 (328)
T 3dsm_A          150 ----YQNRILKIDTETDKVVDELTIG-I-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL  223 (328)
T ss_dssp             ----TCCEEEEEETTTTEEEEEEECS-S-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT
T ss_pred             ----CCCEEEEEECCCCeEEEEEEcC-C-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC
Confidence                12369999999887643 2221 1 11223344578988875432         1489999999887653323332


Q ss_pred             CcCCCCceEEEe--CCEEEEEcCCceEEEEEcCCccc
Q 045821          291 LLTRPPCKLVAI--GKTIFVIGKGCSAVVIDVGNIGN  325 (352)
Q Consensus       291 ~~~~~~~~~~~~--~~~i~v~gG~~~~~~~d~~~~~w  325 (352)
                      .  .....++.-  ++.+|+..+  .++++|+++...
T Consensus       224 g--~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~  256 (328)
T 3dsm_A          224 G--DWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV  256 (328)
T ss_dssp             T--CCCEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred             C--CCceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence            1  122344443  677888876  788899987654

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.50  E-value=4.2e-08  Score=61.60  Aligned_cols=44  Identities=20%  Similarity=0.178  Sum_probs=37.6

Q ss_pred             CCCccCCCcHHHHHHhhccCccccchhhhhhhhhhcccccChhh
Q 045821           14 VVPLISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEW   57 (352)
Q Consensus        14 ~~~~~~~lp~dl~~~il~r~p~~~~~~l~~v~k~W~~l~~s~~~   57 (352)
                      +...+..||+|++.+|++++|..++.+++.|||+|+.++.++.+
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~l   48 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   48 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHH
Confidence            45578899999999999999999999999999999999887754

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.46  E-value=6.3e-05  Score=62.77  Aligned_cols=188  Identities=14%  Similarity=-0.024  Sum_probs=117.4

Q ss_pred             CcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCC
Q 045821          110 RKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRT  189 (352)
Q Consensus       110 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t  189 (352)
                      ..-+++...++.+|.-.|..+    .+.+.++|+.+++-..--+++......+.+..++++|+....+  +.+++||+.|
T Consensus        21 ~ftqGL~~~~~~LyestG~~g----~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~--~~v~v~D~~t   94 (243)
T 3mbr_X           21 AFTEGLFYLRGHLYESTGETG----RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRN--HEGFVYDLAT   94 (243)
T ss_dssp             CCEEEEEEETTEEEEEECCTT----SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS--SEEEEEETTT
T ss_pred             cccccEEEECCEEEEECCCCC----CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeC--CEEEEEECCc
Confidence            344577778999999988644    4789999999998654444555445567777899999997654  7899999988


Q ss_pred             CcEE-EecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCcee-ecCCC---CCCCCCCcEEEECCEEEEE
Q 045821          190 NNWK-LHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWL-HADAN---MASGWRGPAVVVDDALYVL  264 (352)
Q Consensus       190 ~~W~-~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~-~~~~~---~~~~~~~~~~~~~~~l~~~  264 (352)
                      -+-. +++   .....-+.+.-+++||+.-|      ...+..+|+.+.+-. .+...   .+...-.-....+++||+-
T Consensus        95 l~~~~ti~---~~~~Gwglt~dg~~L~vSdg------s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyan  165 (243)
T 3mbr_X           95 LTPRARFR---YPGEGWALTSDDSHLYMSDG------TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLAN  165 (243)
T ss_dssp             TEEEEEEE---CSSCCCEEEECSSCEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred             CcEEEEEe---CCCCceEEeeCCCEEEEECC------CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEE
Confidence            6532 233   22233344545668888854      236999999987643 22221   1111111123458999844


Q ss_pred             ecCCCCeEEEEeCCCCceE---EccCCCCCcCC-------CCceEEE--eCCEEEEEcCCc
Q 045821          265 DQSSGTKLMMWQKESREWS---PVGRLSTLLTR-------PPCKLVA--IGKTIFVIGKGC  313 (352)
Q Consensus       265 gg~~~~~v~~yd~~~~~W~---~~~~~~~~~~~-------~~~~~~~--~~~~i~v~gG~~  313 (352)
                      - ...+.|.+.|+.+++-.   .++.+.+...+       ..-+++.  -++.+||-|-..
T Consensus       166 v-w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~w  225 (243)
T 3mbr_X          166 V-WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRW  225 (243)
T ss_dssp             E-TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTC
T ss_pred             E-CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCC
Confidence            4 33459999999998743   44433221111       1123333  257899999654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.44  E-value=0.00018  Score=63.39  Aligned_cols=226  Identities=9%  Similarity=-0.034  Sum_probs=128.1

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCe-eEeccCCCcccCCcceEEEE-ECCEEEEEeCCCCCCCCCCeEEEEECCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSW-KMIHELPARTLRRKGMGFEV-LGKNAYLLGGCGWSEDATSEVYCYDASM  145 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w-~~~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~t  145 (352)
                      ++++|+...    ..-.+.++|+  .+.+. ..++...      ....++. .++++|+....      ...+.++|+.+
T Consensus        53 ~~~lyv~~~----~~~~v~viD~--~t~~~~~~i~~~~------~p~~i~~~~~g~lyv~~~~------~~~v~~iD~~t  114 (328)
T 3dsm_A           53 DGIGWIVVN----NSHVIFAIDI--NTFKEVGRITGFT------SPRYIHFLSDEKAYVTQIW------DYRIFIINPKT  114 (328)
T ss_dssp             TTEEEEEEG----GGTEEEEEET--TTCCEEEEEECCS------SEEEEEEEETTEEEEEEBS------CSEEEEEETTT
T ss_pred             CCEEEEEEc----CCCEEEEEEC--cccEEEEEcCCCC------CCcEEEEeCCCeEEEEECC------CCeEEEEECCC
Confidence            677888753    2335677799  87765 3443222      1223444 67899998632      46799999999


Q ss_pred             CeeEe-cCCCC---CcceeeeeEEECCEEEEEeC-CCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccC
Q 045821          146 NTWTD-AAPMS---TARCYFPCGVLNQKIYCIGG-LGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSA  220 (352)
Q Consensus       146 ~~W~~-~~~~~---~~r~~~~~~~~~~~iyv~gG-~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~  220 (352)
                      ++-.. ++.-.   .......++..++++|+... .+  ..+.++|+.+++....-+..... ...++.-+|++|+....
T Consensus       115 ~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~--~~v~viD~~t~~~~~~i~~g~~p-~~i~~~~dG~l~v~~~~  191 (328)
T 3dsm_A          115 YEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQ--NRILKIDTETDKVVDELTIGIQP-TSLVMDKYNKMWTITDG  191 (328)
T ss_dssp             TEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTC--CEEEEEETTTTEEEEEEECSSCB-CCCEECTTSEEEEEBCC
T ss_pred             CeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCC--CEEEEEECCCCeEEEEEEcCCCc-cceEEcCCCCEEEEECC
Confidence            87542 22111   00022334446889999853 22  78999999998754322121111 11223346899988532


Q ss_pred             CCCCC-----ceEEEEEeCCCCceee-cCCCCCCCCCCcEEEE---CCEEEEEecCCCCeEEEEeCCCCceEEccCCCCC
Q 045821          221 SAATS-----HVCALVYEPSTDSWLH-ADANMASGWRGPAVVV---DDALYVLDQSSGTKLMMWQKESREWSPVGRLSTL  291 (352)
Q Consensus       221 ~~~~~-----~~~i~~yd~~~~~W~~-~~~~~~~~~~~~~~~~---~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~  291 (352)
                      .....     ...+.++|+.+.+... +..+..  .....+.+   ++.||+..+    .++++|+++++.......+..
T Consensus       192 ~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g--~~p~~la~~~d~~~lyv~~~----~v~~~d~~t~~~~~~~~~~~~  265 (328)
T 3dsm_A          192 GYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG--DWPSEVQLNGTRDTLYWINN----DIWRMPVEADRVPVRPFLEFR  265 (328)
T ss_dssp             BCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT--CCCEEEEECTTSCEEEEESS----SEEEEETTCSSCCSSCSBCCC
T ss_pred             CccCCccccCCceEEEEECCCCeEEEEEecCCC--CCceeEEEecCCCEEEEEcc----EEEEEECCCCceeeeeeecCC
Confidence            21111     2579999999887653 221111  11122322   456777655    799999998776322212210


Q ss_pred             cCCCCceEEE--eCCEEEEEc-----CCceEEEEEcC
Q 045821          292 LTRPPCKLVA--IGKTIFVIG-----KGCSAVVIDVG  321 (352)
Q Consensus       292 ~~~~~~~~~~--~~~~i~v~g-----G~~~~~~~d~~  321 (352)
                       .....+++.  .++.||+..     +...+.+||++
T Consensus       266 -~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          266 -DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             -SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             -CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence             122234444  378899986     33457789987

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.33  E-value=0.0015  Score=58.28  Aligned_cols=204  Identities=16%  Similarity=0.173  Sum_probs=115.8

Q ss_pred             eEEEecCCCCCCC--eeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCe--eEecCCCCCcc-
Q 045821           84 CCYVLDPNSTRRS--WKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNT--WTDAAPMSTAR-  158 (352)
Q Consensus        84 ~~~~~d~~~~~~~--w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~r-  158 (352)
                      .++.||+  .+++  |..-...+.. ..+.....+..++.+|+. .      ....+..+|+.+++  |+.-...+... 
T Consensus       154 ~l~~~d~--~tG~~~W~~~~~~~~~-~~~~~~~~~~~~~~v~~g-~------~~g~l~~~d~~tG~~~w~~~~~~~~~~~  223 (376)
T 3q7m_A          154 QLQALNE--ADGAVKWTVNLDMPSL-SLRGESAPTTAFGAAVVG-G------DNGRVSAVLMEQGQMIWQQRISQATGST  223 (376)
T ss_dssp             EEEEEET--TTCCEEEEEECCC------CCCCCCEEETTEEEEC-C------TTTEEEEEETTTCCEEEEEECCC-----
T ss_pred             eEEEEEC--CCCcEEEEEeCCCCce-eecCCCCcEEECCEEEEE-c------CCCEEEEEECCCCcEEEEEecccCCCCc
Confidence            4667787  5554  7654432210 111122334457777763 2      13468999998775  76543222111 


Q ss_pred             -------eeeeeEEECCEEEEEeCCCCCCceEEEeCCCC--cEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEE
Q 045821          159 -------CYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTN--NWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCA  229 (352)
Q Consensus       159 -------~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i  229 (352)
                             .....+..++.+|+.+..   ..+..+|+.++  .|+.-.  .   .....+..++.||+....      ..+
T Consensus       224 ~~~~~~~~~~~p~~~~~~v~~~~~~---g~l~~~d~~tG~~~w~~~~--~---~~~~~~~~~~~l~~~~~~------g~l  289 (376)
T 3q7m_A          224 EIDRLSDVDTTPVVVNGVVFALAYN---GNLTALDLRSGQIMWKREL--G---SVNDFIVDGNRIYLVDQN------DRV  289 (376)
T ss_dssp             ------CCCCCCEEETTEEEEECTT---SCEEEEETTTCCEEEEECC--C---CEEEEEEETTEEEEEETT------CCE
T ss_pred             ccccccccCCCcEEECCEEEEEecC---cEEEEEECCCCcEEeeccC--C---CCCCceEECCEEEEEcCC------CeE
Confidence                   223445568899887532   57899999877  476532  1   122345668999997432      248


Q ss_pred             EEEeCCCCc--eeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCc--eEEccCCCCCcCCCCceEEEeCCE
Q 045821          230 LVYEPSTDS--WLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESRE--WSPVGRLSTLLTRPPCKLVAIGKT  305 (352)
Q Consensus       230 ~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~  305 (352)
                      .++|+.+++  |+.-..  ........+..++.||+... .+ .++.+|+++++  |+.-  ++.  .......+..++.
T Consensus       290 ~~~d~~tG~~~w~~~~~--~~~~~~~~~~~~~~l~v~~~-~g-~l~~~d~~tG~~~~~~~--~~~--~~~~~~~~~~~~~  361 (376)
T 3q7m_A          290 MALTIDGGVTLWTQSDL--LHRLLTSPVLYNGNLVVGDS-EG-YLHWINVEDGRFVAQQK--VDS--SGFQTEPVAADGK  361 (376)
T ss_dssp             EEEETTTCCEEEEECTT--TTSCCCCCEEETTEEEEECT-TS-EEEEEETTTCCEEEEEE--CCT--TCBCSCCEEETTE
T ss_pred             EEEECCCCcEEEeeccc--CCCcccCCEEECCEEEEEeC-CC-eEEEEECCCCcEEEEEe--cCC--CcceeCCEEECCE
Confidence            899987765  765321  11222233556888887643 33 79999998876  5432  211  1112334556899


Q ss_pred             EEEEcCCceEEEEE
Q 045821          306 IFVIGKGCSAVVID  319 (352)
Q Consensus       306 i~v~gG~~~~~~~d  319 (352)
                      ||+......++.||
T Consensus       362 l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          362 LLIQAKDGTVYSIT  375 (376)
T ss_dssp             EEEEBTTSCEEEEE
T ss_pred             EEEEeCCCEEEEEe
Confidence            99887555566665

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.20  E-value=0.00018  Score=60.50  Aligned_cols=186  Identities=11%  Similarity=-0.049  Sum_probs=112.8

Q ss_pred             ceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCc
Q 045821          112 GMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNN  191 (352)
Q Consensus       112 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~  191 (352)
                      ..++...++.+|+..|..+    .+.+.++|+.+++-..--+++...+..+++..+++||+....+  +.+.+||+.|.+
T Consensus        45 tqGL~~~~~~LyestG~~g----~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~--~~v~v~D~~t~~  118 (262)
T 3nol_A           45 TEGFFYRNGYFYESTGLNG----RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKN--GLGFVWNIRNLR  118 (262)
T ss_dssp             EEEEEEETTEEEEEEEETT----EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS--SEEEEEETTTCC
T ss_pred             cceEEEECCEEEEECCCCC----CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeC--CEEEEEECccCc
Confidence            3556666899999988543    3678999999998544334443334455777899999997654  789999999876


Q ss_pred             EE-EecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCcee-ecCCCC-CCCCCC--cEEEECCEEEEEec
Q 045821          192 WK-LHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWL-HADANM-ASGWRG--PAVVVDDALYVLDQ  266 (352)
Q Consensus       192 W~-~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~-~~~~~~-~~~~~~--~~~~~~~~l~~~gg  266 (352)
                      -. +++   ......+.+.-+++||+.-|      ...++.+|+.+.+-. .++... ......  -....+|+||+-- 
T Consensus       119 ~~~ti~---~~~eG~glt~dg~~L~~SdG------s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~-  188 (262)
T 3nol_A          119 QVRSFN---YDGEGWGLTHNDQYLIMSDG------TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANV-  188 (262)
T ss_dssp             EEEEEE---CSSCCCCEEECSSCEEECCS------SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEE-
T ss_pred             EEEEEE---CCCCceEEecCCCEEEEECC------CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEE-
Confidence            33 333   22233344444567888743      246999999986643 332211 111111  1234589988543 


Q ss_pred             CCCCeEEEEeCCCCceE---EccCCCCCc------CCCCceEEE--eCCEEEEEcCCc
Q 045821          267 SSGTKLMMWQKESREWS---PVGRLSTLL------TRPPCKLVA--IGKTIFVIGKGC  313 (352)
Q Consensus       267 ~~~~~v~~yd~~~~~W~---~~~~~~~~~------~~~~~~~~~--~~~~i~v~gG~~  313 (352)
                      ...+.|.+.|+++++-.   .++.+.+..      ....-+++.  -.+.+||.|...
T Consensus       189 w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W  246 (262)
T 3nol_A          189 WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW  246 (262)
T ss_dssp             TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC
T ss_pred             ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC
Confidence            44459999999998754   333232110      011123333  357899999665

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.20  E-value=5.4e-07  Score=77.21  Aligned_cols=48  Identities=23%  Similarity=0.408  Sum_probs=42.9

Q ss_pred             CCccCCCcHHHHHHhhccCccccch-hhhhhhhhhcccccChhhHHHHh
Q 045821           15 VPLISGLPDDIALFCLARVPRRYHA-VLKCVSSRWRGLLHSEEWCAYRR   62 (352)
Q Consensus        15 ~~~~~~lp~dl~~~il~r~p~~~~~-~l~~v~k~W~~l~~s~~~~~~~~   62 (352)
                      +..+..||+|++++||++||.+++. ++++|||+|+.|+.++.|-+.+.
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~   96 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKC   96 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHH
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHh
Confidence            4567899999999999999999999 99999999999999998755443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.13  E-value=0.0022  Score=57.19  Aligned_cols=189  Identities=12%  Similarity=0.106  Sum_probs=109.5

Q ss_pred             EEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCe--eEecCCCC-------CcceeeeeEEECCEEEEEeCCCCCCceEE
Q 045821          114 GFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNT--WTDAAPMS-------TARCYFPCGVLNQKIYCIGGLGDTHSWDV  184 (352)
Q Consensus       114 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~~-------~~r~~~~~~~~~~~iyv~gG~~~~~~v~~  184 (352)
                      +.++.++.||+...       ...+++||..+++  |+.-....       ........+..++.+|+....   ..+.+
T Consensus        48 ~p~v~~~~v~~~~~-------~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~---g~l~a  117 (376)
T 3q7m_A           48 HPALADNVVYAADR-------AGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK---AQVYA  117 (376)
T ss_dssp             CCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETT---SEEEE
T ss_pred             ccEEECCEEEEEcC-------CCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCC---CEEEE
Confidence            44667899998743       3478999998775  76543211       122334455668899986542   57899


Q ss_pred             EeCCCCc--EEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCc--eeecCCCCCC--CCCCcEEEEC
Q 045821          185 YDPRTNN--WKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDS--WLHADANMAS--GWRGPAVVVD  258 (352)
Q Consensus       185 yd~~t~~--W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~--W~~~~~~~~~--~~~~~~~~~~  258 (352)
                      +|..+++  |+.-...   ......+..++.+|+... .     ..++.||..+++  |+.-......  ......+..+
T Consensus       118 ~d~~tG~~~W~~~~~~---~~~~~p~~~~~~v~v~~~-~-----g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~  188 (376)
T 3q7m_A          118 LNTSDGTVAWQTKVAG---EALSRPVVSDGLVLIHTS-N-----GQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAF  188 (376)
T ss_dssp             EETTTCCEEEEEECSS---CCCSCCEEETTEEEEECT-T-----SEEEEEETTTCCEEEEEECCC-----CCCCCCEEET
T ss_pred             EECCCCCEEEEEeCCC---ceEcCCEEECCEEEEEcC-C-----CeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEEC
Confidence            9998774  7653321   112233556888888632 1     268999987765  8765332211  1112234557


Q ss_pred             CEEEEEecCCCCeEEEEeCCCCc--eEEccCCCCCc------CCCCceEEEeCCEEEEEcCCceEEEEEcCCc
Q 045821          259 DALYVLDQSSGTKLMMWQKESRE--WSPVGRLSTLL------TRPPCKLVAIGKTIFVIGKGCSAVVIDVGNI  323 (352)
Q Consensus       259 ~~l~~~gg~~~~~v~~yd~~~~~--W~~~~~~~~~~------~~~~~~~~~~~~~i~v~gG~~~~~~~d~~~~  323 (352)
                      +.+|+ |...+ .++.||+.+++  |+.-...+...      .......+..++.||+.+.......+|+++.
T Consensus       189 ~~v~~-g~~~g-~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG  259 (376)
T 3q7m_A          189 GAAVV-GGDNG-RVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG  259 (376)
T ss_dssp             TEEEE-CCTTT-EEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC
T ss_pred             CEEEE-EcCCC-EEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC
Confidence            77665 33333 89999997654  76543222100      0112334456788888765556777887543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.11  E-value=0.0033  Score=53.58  Aligned_cols=233  Identities=9%  Similarity=-0.006  Sum_probs=120.6

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCccc-CCcceEEEE--ECCEEEEEeCCCCCCCCCCeEEEEECC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTL-RRKGMGFEV--LGKNAYLLGGCGWSEDATSEVYCYDAS  144 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~-~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~  144 (352)
                      ++.+|+....    .-.+.+||+  .......+........ ...-..++.  -++.+|+.+..     ....+.+||+.
T Consensus        40 ~g~l~v~~~~----~~~i~~~d~--~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~-----~~~~i~~~d~~  108 (286)
T 1q7f_A           40 QNDIIVADTN----NHRIQIFDK--EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS-----PTHQIQIYNQY  108 (286)
T ss_dssp             TCCEEEEEGG----GTEEEEECT--TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG-----GGCEEEEECTT
T ss_pred             CCCEEEEECC----CCEEEEECC--CCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC-----CCCEEEEECCC
Confidence            5667776432    234667788  6444444432110001 112233444  26789988631     13568889965


Q ss_pred             CCeeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEE-ECCEEEEEccCCC
Q 045821          145 MNTWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFV-MDGKIYIRCSASA  222 (352)
Q Consensus       145 t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~g~iyv~GG~~~  222 (352)
                      ...-..+..... .....++.. ++++|+.....  ..+.+||+.......+........-...+. -+|++|+..... 
T Consensus       109 g~~~~~~~~~~~-~~~~~i~~~~~g~l~v~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~-  184 (286)
T 1q7f_A          109 GQFVRKFGATIL-QHPRGVTVDNKGRIIVVECKV--MRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA-  184 (286)
T ss_dssp             SCEEEEECTTTC-SCEEEEEECTTSCEEEEETTT--TEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG-
T ss_pred             CcEEEEecCccC-CCceEEEEeCCCCEEEEECCC--CEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCC-
Confidence            544444432111 111233332 57888876533  678999987665444432111111122222 268999985322 


Q ss_pred             CCCceEEEEEeCCCCceeecCCCCCCCCCCcEEE--ECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEE
Q 045821          223 ATSHVCALVYEPSTDSWLHADANMASGWRGPAVV--VDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLV  300 (352)
Q Consensus       223 ~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~--~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~  300 (352)
                          ..+.+||+.......+.... .......+.  -++.||+.+...+..|.+||++.+.-..+..-..  .....+++
T Consensus       185 ----~~i~~~~~~g~~~~~~~~~g-~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~--~~~~~~i~  257 (286)
T 1q7f_A          185 ----HCVKVFNYEGQYLRQIGGEG-ITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVK--HAQCFDVA  257 (286)
T ss_dssp             ----TEEEEEETTCCEEEEESCTT-TSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSC--CSCEEEEE
T ss_pred             ----CEEEEEcCCCCEEEEEccCC-ccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCC--CCcceeEE
Confidence                36889998665444443211 001112233  3678888765443389999987665444432111  11112333


Q ss_pred             E-eCCEEEEEcCCceEEEEEcCC
Q 045821          301 A-IGKTIFVIGKGCSAVVIDVGN  322 (352)
Q Consensus       301 ~-~~~~i~v~gG~~~~~~~d~~~  322 (352)
                      . .++++|+......+.+|+...
T Consensus       258 ~~~~g~l~vs~~~~~v~v~~~~~  280 (286)
T 1q7f_A          258 LMDDGSVVLASKDYRLYIYRYVQ  280 (286)
T ss_dssp             EETTTEEEEEETTTEEEEEECSC
T ss_pred             ECCCCcEEEECCCCeEEEEEccc
Confidence            3 477899887655677787654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.02  E-value=0.0048  Score=54.00  Aligned_cols=235  Identities=9%  Similarity=-0.007  Sum_probs=119.4

Q ss_pred             CCEEEEEEecCC--CCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-CCEEEEEeCCCCCCCCCCeEEEEECC
Q 045821           68 ETWIYAFCRDNK--LERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-GKNAYLLGGCGWSEDATSEVYCYDAS  144 (352)
Q Consensus        68 ~~~l~~~gg~~~--~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~  144 (352)
                      ++.+|+......  .....++.+|+  .+......-+...    ......... ++.+|+.+..      ...++++|+.
T Consensus        52 g~~l~~~~~~~~~~~~~~~v~~~d~--~~~~~~~~~~~~~----~~~~~~~s~dg~~l~v~~~~------~~~v~~~d~~  119 (353)
T 3vgz_A           52 ENALWLATSQSRKLDKGGVVYRLDP--VTLEVTQAIHNDL----KPFGATINNTTQTLWFGNTV------NSAVTAIDAK  119 (353)
T ss_dssp             TTEEEEEECCCTTTEESEEEEEECT--TTCCEEEEEEESS----CCCSEEEETTTTEEEEEETT------TTEEEEEETT
T ss_pred             CCEEEEEcCCCcCCCCCccEEEEcC--CCCeEEEEEecCC----CcceEEECCCCCEEEEEecC------CCEEEEEeCC
Confidence            567877653211  12446788898  7766543333221    111222222 3458877642      3578999999


Q ss_pred             CCeeEecCCCCC--------cceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECC-E
Q 045821          145 MNTWTDAAPMST--------ARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDG-K  213 (352)
Q Consensus       145 t~~W~~~~~~~~--------~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g-~  213 (352)
                      +++-...-..+.        +.....++..  ++.+|+.+.... ..+.+||+.+.+-...-+.........+..-+| .
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~  198 (353)
T 3vgz_A          120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKE-SVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR  198 (353)
T ss_dssp             TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSS-CEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred             CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCC-ceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence            886422211111        1112223332  356887763221 679999998876433222111111222333344 5


Q ss_pred             EEEEccCCCCCCceEEEEEeCCCCceee-cCCCCCCCCCC---cEEEEC-CEEEEEecCCCCeEEEEeCCCCceEEccCC
Q 045821          214 IYIRCSASAATSHVCALVYEPSTDSWLH-ADANMASGWRG---PAVVVD-DALYVLDQSSGTKLMMWQKESREWSPVGRL  288 (352)
Q Consensus       214 iyv~GG~~~~~~~~~i~~yd~~~~~W~~-~~~~~~~~~~~---~~~~~~-~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~  288 (352)
                      +|+... .     ..+..+|..+.+-.. +..........   .++.-+ +.+|+.+... ..+.+||+.+++....-..
T Consensus       199 l~~~~~-~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-~~v~~~d~~~~~~~~~~~~  271 (353)
T 3vgz_A          199 LYTTNA-D-----GELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA-AEVLVVDTRNGNILAKVAA  271 (353)
T ss_dssp             EEEECT-T-----SEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS-SEEEEEETTTCCEEEEEEC
T ss_pred             EEEEcC-C-----CeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC-CEEEEEECCCCcEEEEEEc
Confidence            676632 2     367889988775432 22111111111   122324 4566665433 4899999988775443333


Q ss_pred             CCCcCCCCceEEEeCCEEEEEcC-CceEEEEEcCCccc
Q 045821          289 STLLTRPPCKLVAIGKTIFVIGK-GCSAVVIDVGNIGN  325 (352)
Q Consensus       289 ~~~~~~~~~~~~~~~~~i~v~gG-~~~~~~~d~~~~~w  325 (352)
                      +..   ...++...++.+|+.+. ...+.++|+++...
T Consensus       272 ~~~---~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~  306 (353)
T 3vgz_A          272 PES---LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV  306 (353)
T ss_dssp             SSC---CCEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCC---ceEEECCCCCEEEEEECCCCeEEEEECCCCeE
Confidence            321   22223233556888774 45677899876553

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.01  E-value=0.0014  Score=54.69  Aligned_cols=162  Identities=12%  Similarity=-0.045  Sum_probs=106.0

Q ss_pred             eeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCc
Q 045821          159 CYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDS  238 (352)
Q Consensus       159 ~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~  238 (352)
                      +.+.+...++.+|+..|....+.+.++|+.|++=..--+++......+.+..+++||++....     ..+++||+.+.+
T Consensus        22 ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~-----~~v~v~D~~tl~   96 (243)
T 3mbr_X           22 FTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRN-----HEGFVYDLATLT   96 (243)
T ss_dssp             CEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS-----SEEEEEETTTTE
T ss_pred             ccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeC-----CEEEEEECCcCc
Confidence            445677778999999997666889999999997655444555555566778899999995332     479999998766


Q ss_pred             ee-ecCCCCCCCCCCcEEEE-CCEEEEEecCCCCeEEEEeCCCCceE-Ecc--CCCCCcCCCCceEEEeCCEEEEEc-CC
Q 045821          239 WL-HADANMASGWRGPAVVV-DDALYVLDQSSGTKLMMWQKESREWS-PVG--RLSTLLTRPPCKLVAIGKTIFVIG-KG  312 (352)
Q Consensus       239 W~-~~~~~~~~~~~~~~~~~-~~~l~~~gg~~~~~v~~yd~~~~~W~-~~~--~~~~~~~~~~~~~~~~~~~i~v~g-G~  312 (352)
                      -. .++..    ..+.+++. ++.||+..| + +.++.+|+++.+-. .+.  .-+.. ....-.+...+++||+-- ..
T Consensus        97 ~~~ti~~~----~~Gwglt~dg~~L~vSdg-s-~~l~~iDp~t~~~~~~I~V~~~g~~-~~~lNeLe~~~G~lyanvw~s  169 (243)
T 3mbr_X           97 PRARFRYP----GEGWALTSDDSHLYMSDG-T-AVIRKLDPDTLQQVGSIKVTAGGRP-LDNLNELEWVNGELLANVWLT  169 (243)
T ss_dssp             EEEEEECS----SCCCEEEECSSCEEEECS-S-SEEEEECTTTCCEEEEEECEETTEE-CCCEEEEEEETTEEEEEETTT
T ss_pred             EEEEEeCC----CCceEEeeCCCEEEEECC-C-CeEEEEeCCCCeEEEEEEEccCCcc-cccceeeEEeCCEEEEEECCC
Confidence            43 33332    13344444 556888776 3 38999999986543 222  11111 111123444589999754 56


Q ss_pred             ceEEEEEcCCcccccceEEe
Q 045821          313 CSAVVIDVGNIGNIGGIMVS  332 (352)
Q Consensus       313 ~~~~~~d~~~~~w~~~~~~~  332 (352)
                      +.+.++|+++..-.+...+.
T Consensus       170 ~~I~vIDp~tG~V~~~idl~  189 (243)
T 3mbr_X          170 SRIARIDPASGKVVAWIDLQ  189 (243)
T ss_dssp             TEEEEECTTTCBEEEEEECG
T ss_pred             CeEEEEECCCCCEEEEEECC
Confidence            67888999987755544444

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.00  E-value=0.0054  Score=52.26  Aligned_cols=225  Identities=6%  Similarity=-0.072  Sum_probs=118.7

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-CCEEEEEeCCCCCCCCCCeEEEEECCCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-GKNAYLLGGCGWSEDATSEVYCYDASMN  146 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~  146 (352)
                      ++.+|+....    .-.++.||+  . +....+. ++.  ....-..++.. ++.+|+....      ...+.++|+ ++
T Consensus        67 ~g~l~v~~~~----~~~i~~~~~--~-g~~~~~~-~~~--~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~-~g  129 (299)
T 2z2n_A           67 DGEVWFTENA----ANKIGRITK--K-GIIKEYT-LPN--PDSAPYGITEGPNGDIWFTEMN------GNRIGRITD-DG  129 (299)
T ss_dssp             TSCEEEEETT----TTEEEEECT--T-SCEEEEE-CSS--TTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TC
T ss_pred             CCCEEEeCCC----CCeEEEECC--C-CcEEEEe-CCC--cCCCceeeEECCCCCEEEEecC------CceEEEECC-CC
Confidence            5667776321    224677788  5 4554443 221  11122333333 5778887532      356888998 66


Q ss_pred             eeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEE-ECCEEEEEccCCCCC
Q 045821          147 TWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFV-MDGKIYIRCSASAAT  224 (352)
Q Consensus       147 ~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~g~iyv~GG~~~~~  224 (352)
                      +...+...........++.. ++++|+.....  ..+.+||+ +++...+............+. -+|+||+.....   
T Consensus       130 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~--~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~---  203 (299)
T 2z2n_A          130 KIREYELPNKGSYPSFITLGSDNALWFTENQN--NAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIG---  203 (299)
T ss_dssp             CEEEEECSSTTCCEEEEEECTTSCEEEEETTT--TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTT---
T ss_pred             CEEEecCCCCCCCCceEEEcCCCCEEEEeCCC--CEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCC---
Confidence            55543221111122233333 57888865322  57899999 777766532211111112222 257898874221   


Q ss_pred             CceEEEEEeCCCCceeecCCCCCCCCCCcEEEE--CCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEe
Q 045821          225 SHVCALVYEPSTDSWLHADANMASGWRGPAVVV--DDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAI  302 (352)
Q Consensus       225 ~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~  302 (352)
                        ..+.+||+ +++...+..+. .......+..  ++.||+..... ..+.+||+ +++..... ++.. .....+++..
T Consensus       204 --~~i~~~~~-~g~~~~~~~~~-~~~~~~~i~~~~~g~l~v~~~~~-~~i~~~d~-~g~~~~~~-~~~~-~~~~~~i~~~  275 (299)
T 2z2n_A          204 --NKIGRITT-SGEITEFKIPT-PNARPHAITAGAGIDLWFTEWGA-NKIGRLTS-NNIIEEYP-IQIK-SAEPHGICFD  275 (299)
T ss_dssp             --TEEEEECT-TCCEEEEECSS-TTCCEEEEEECSTTCEEEEETTT-TEEEEEET-TTEEEEEE-CSSS-SCCEEEEEEC
T ss_pred             --ceEEEECC-CCcEEEEECCC-CCCCceeEEECCCCCEEEeccCC-ceEEEECC-CCceEEEe-CCCC-CCccceEEec
Confidence              26889999 77776543211 1111112333  56788765333 38999999 45555443 1211 1122334446


Q ss_pred             CCEEEEEcCCceEEEEEcCCc
Q 045821          303 GKTIFVIGKGCSAVVIDVGNI  323 (352)
Q Consensus       303 ~~~i~v~gG~~~~~~~d~~~~  323 (352)
                      ++.||+.........||+++.
T Consensus       276 ~g~l~v~~~~~~l~~~~~~~~  296 (299)
T 2z2n_A          276 GETIWFAMECDKIGKLTLIKD  296 (299)
T ss_dssp             SSCEEEEETTTEEEEEEEC--
T ss_pred             CCCEEEEecCCcEEEEEcCcc
Confidence            778888865567778888764

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.00  E-value=0.00017  Score=64.65  Aligned_cols=220  Identities=15%  Similarity=0.174  Sum_probs=113.3

Q ss_pred             CEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-C-CEEEEEeCCCCCCCCCCeEEEEECCCC
Q 045821           69 TWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-G-KNAYLLGGCGWSEDATSEVYCYDASMN  146 (352)
Q Consensus        69 ~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~d~~t~  146 (352)
                      +++|+.++.    .-.+.++|.  .++.....-....     .-.+++.. + ..+|+.++.      ...+.+||..++
T Consensus         2 ~~l~vs~~~----d~~v~v~d~--~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~------d~~i~v~d~~~~   64 (391)
T 1l0q_A            2 TFAYIANSE----SDNISVIDV--TSNKVTATIPVGS-----NPMGAVISPDGTKVYVANAH------SNDVSIIDTATN   64 (391)
T ss_dssp             EEEEEEETT----TTEEEEEET--TTTEEEEEEECSS-----SEEEEEECTTSSEEEEEEGG------GTEEEEEETTTT
T ss_pred             CEEEEEcCC----CCEEEEEEC--CCCeEEEEeecCC-----CcceEEECCCCCEEEEECCC------CCeEEEEECCCC
Confidence            456766653    124556687  6665433322221     11223332 3 357777643      357899999888


Q ss_pred             eeEecCCCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE-CC-EEEEEccCCC
Q 045821          147 TWTDAAPMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM-DG-KIYIRCSASA  222 (352)
Q Consensus       147 ~W~~~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g-~iyv~GG~~~  222 (352)
                      +....-....  .-..++..  +..+|+.+..+  ..+.+||..+++-...-...  ......+.. ++ .+|+.++.. 
T Consensus        65 ~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~--~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~-  137 (391)
T 1l0q_A           65 NVIATVPAGS--SPQGVAVSPDGKQVYVTNMAS--STLSVIDTTSNTVAGTVKTG--KSPLGLALSPDGKKLYVTNNGD-  137 (391)
T ss_dssp             EEEEEEECSS--SEEEEEECTTSSEEEEEETTT--TEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEETTT-
T ss_pred             eEEEEEECCC--CccceEECCCCCEEEEEECCC--CEEEEEECCCCeEEEEEeCC--CCcceEEECCCCCEEEEEeCCC-
Confidence            7543322222  11222222  34577766543  67999999988654332211  111222222 44 577775433 


Q ss_pred             CCCceEEEEEeCCCCceeecCCCCCCCCCCcEEE--ECC-EEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceE
Q 045821          223 ATSHVCALVYEPSTDSWLHADANMASGWRGPAVV--VDD-ALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKL  299 (352)
Q Consensus       223 ~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~--~~~-~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~  299 (352)
                          ..+..||..+.+....-...   .....+.  -++ .||+.++..+ .+.+||+.+++....-....    ...++
T Consensus       138 ----~~v~~~d~~~~~~~~~~~~~---~~~~~~~~~~dg~~l~~~~~~~~-~v~~~d~~~~~~~~~~~~~~----~~~~~  205 (391)
T 1l0q_A          138 ----KTVSVINTVTKAVINTVSVG---RSPKGIAVTPDGTKVYVANFDSM-SISVIDTVTNSVIDTVKVEA----APSGI  205 (391)
T ss_dssp             ----TEEEEEETTTTEEEEEEECC---SSEEEEEECTTSSEEEEEETTTT-EEEEEETTTTEEEEEEECSS----EEEEE
T ss_pred             ----CEEEEEECCCCcEEEEEecC---CCcceEEECCCCCEEEEEeCCCC-EEEEEECCCCeEEEEEecCC----Cccce
Confidence                26889999887654432111   1111222  234 5666665544 89999998876543322211    11122


Q ss_pred             EE--eCCEEEEEc---CCceEEEEEcCCcc
Q 045821          300 VA--IGKTIFVIG---KGCSAVVIDVGNIG  324 (352)
Q Consensus       300 ~~--~~~~i~v~g---G~~~~~~~d~~~~~  324 (352)
                      +.  .+..|++.+   +...+.+||+++..
T Consensus       206 ~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~  235 (391)
T 1l0q_A          206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNK  235 (391)
T ss_dssp             EECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred             EECCCCCEEEEEecCcCCCcEEEEECCCCe
Confidence            21  244566665   34567788887643

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.99  E-value=0.0056  Score=52.16  Aligned_cols=221  Identities=8%  Similarity=-0.044  Sum_probs=116.8

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-CCEEEEEeCCCCCCCCCCeEEEEECCCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-GKNAYLLGGCGWSEDATSEVYCYDASMN  146 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~  146 (352)
                      ++.+|+...    ..-.++.||+  . +.+..+....   ....-+.++.- ++.+|+....      ...+.+||+. +
T Consensus        72 ~g~l~v~~~----~~~~v~~~d~--~-g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g  134 (300)
T 2qc5_A           72 LGDIWFTEN----GANKIGKLSK--K-GGFTEYPLPQ---PDSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD-G  134 (300)
T ss_dssp             TSCEEEEET----TTTEEEEECT--T-SCEEEEECSS---TTCCEEEEEECSTTCEEEEETT------TTEEEEECTT-S
T ss_pred             CCCEEEEec----CCCeEEEECC--C-CCeEEecCCC---CCCCCccceECCCCCEEEEccC------CCeEEEECCC-C
Confidence            566777632    1235677898  6 6665443211   11122333333 5778887531      3468889987 5


Q ss_pred             eeEecCCCCCc-ceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE-CCEEEEEccCCCC
Q 045821          147 TWTDAAPMSTA-RCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM-DGKIYIRCSASAA  223 (352)
Q Consensus       147 ~W~~~~~~~~~-r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~iyv~GG~~~~  223 (352)
                      +..... ++.. ......+.- ++++|+.....  ..+.+||+ +++...+..+.........+.. +|+||+.....  
T Consensus       135 ~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~~--~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~--  208 (300)
T 2qc5_A          135 TIYEYD-LPNKGSYPAFITLGSDNALWFTENQN--NSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMG--  208 (300)
T ss_dssp             CEEEEE-CSSTTCCEEEEEECTTSSEEEEETTT--TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTT--
T ss_pred             CEEEcc-CCCCCCCceeEEECCCCCEEEEecCC--CeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCC--
Confidence            554332 1211 122233332 56788876322  57899999 6777665421111111222222 67899874221  


Q ss_pred             CCceEEEEEeCCCCceeecCCCCCCCCCCcEEEE--CCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEE
Q 045821          224 TSHVCALVYEPSTDSWLHADANMASGWRGPAVVV--DDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVA  301 (352)
Q Consensus       224 ~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~  301 (352)
                         ..+.+||+ +++......+. .......+..  ++.||+..... ..+.+||+ +++..... ++.. .....+++.
T Consensus       209 ---~~i~~~~~-~g~~~~~~~~~-~~~~~~~i~~d~~g~l~v~~~~~-~~i~~~~~-~g~~~~~~-~~~~-~~~~~~i~~  279 (300)
T 2qc5_A          209 ---NKIGRITT-TGEISEYDIPT-PNARPHAITAGKNSEIWFTEWGA-NQIGRITN-DNTIQEYQ-LQTE-NAEPHGITF  279 (300)
T ss_dssp             ---TEEEEECT-TCCEEEEECSS-TTCCEEEEEECSTTCEEEEETTT-TEEEEECT-TSCEEEEE-CCST-TCCCCCEEE
T ss_pred             ---CEEEEEcC-CCcEEEEECCC-CCCCceEEEECCCCCEEEeccCC-CeEEEECC-CCcEEEEE-CCcc-CCccceeEe
Confidence               25889998 66665543211 1111122333  56788776333 38999999 45665443 2211 112233443


Q ss_pred             -eCCEEEEEcCCceEEEEEcC
Q 045821          302 -IGKTIFVIGKGCSAVVIDVG  321 (352)
Q Consensus       302 -~~~~i~v~gG~~~~~~~d~~  321 (352)
                       -++.||+.+.. .+..||++
T Consensus       280 ~~~g~l~v~~~~-~i~~~~p~  299 (300)
T 2qc5_A          280 GKDGSVWFALKC-KIGKLNLN  299 (300)
T ss_dssp             CTTSCEEEECSS-EEEEEEEC
T ss_pred             CCCCCEEEEccC-ceEEeCCC
Confidence             36788887763 67778875

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.96  E-value=0.00074  Score=56.88  Aligned_cols=153  Identities=6%  Similarity=-0.088  Sum_probs=98.5

Q ss_pred             ceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCc
Q 045821          112 GMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNN  191 (352)
Q Consensus       112 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~  191 (352)
                      ..++...++.+|+..|..+      .+.++|+.+++-..-- ++...+..+++..+++||+....+  +.+++||+.|.+
T Consensus        57 tqGL~~~~~~Ly~stG~~g------~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~--~~v~V~D~~Tl~  127 (268)
T 3nok_A           57 TQGLVFHQGHFFESTGHQG------TLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTE--GLLFTWSGMPPQ  127 (268)
T ss_dssp             EEEEEEETTEEEEEETTTT------EEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSS--CEEEEEETTTTE
T ss_pred             cceEEEECCEEEEEcCCCC------EEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccC--CEEEEEECCcCc
Confidence            3567777899999988543      3889999998743222 443334455777789999997654  789999999875


Q ss_pred             EE-EecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCcee-ecCCCC-CCCCCC--cEEEECCEEEEEec
Q 045821          192 WK-LHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWL-HADANM-ASGWRG--PAVVVDDALYVLDQ  266 (352)
Q Consensus       192 W~-~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~-~~~~~~-~~~~~~--~~~~~~~~l~~~gg  266 (352)
                      -. +++   ......+.+.-+++||+.-|      ...+..+|+.+.+-. .+.... ......  -....+|+||+ +-
T Consensus       128 ~~~ti~---~~~eGwGLt~Dg~~L~vSdG------s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lya-nv  197 (268)
T 3nok_A          128 RERTTR---YSGEGWGLCYWNGKLVRSDG------GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYA-NI  197 (268)
T ss_dssp             EEEEEE---CSSCCCCEEEETTEEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEE-EE
T ss_pred             EEEEEe---CCCceeEEecCCCEEEEECC------CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEE-EE
Confidence            32 333   22333455666778999854      237999999887643 232211 111111  12345889884 43


Q ss_pred             CCCCeEEEEeCCCCceE
Q 045821          267 SSGTKLMMWQKESREWS  283 (352)
Q Consensus       267 ~~~~~v~~yd~~~~~W~  283 (352)
                      ...+.|.+.|+++++-.
T Consensus       198 w~s~~I~vIDp~TG~V~  214 (268)
T 3nok_A          198 WHSSDVLEIDPATGTVV  214 (268)
T ss_dssp             TTCSEEEEECTTTCBEE
T ss_pred             CCCCeEEEEeCCCCcEE
Confidence            44459999999998743

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.92  E-value=0.0056  Score=52.16  Aligned_cols=223  Identities=9%  Similarity=0.000  Sum_probs=118.5

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEE-ECCEEEEEeCCCCCCCCCCeEEEEECCCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEV-LGKNAYLLGGCGWSEDATSEVYCYDASMN  146 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~t~  146 (352)
                      ++.+|+...    ..-.+..||+  . +.+..+....   ....-+.++. -++.+|+....      ...+++||+. +
T Consensus        25 ~g~l~v~~~----~~~~v~~~d~--~-~~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g   87 (299)
T 2z2n_A           25 KGKVWITQH----KANMISCINL--D-GKITEYPLPT---PDAKVMCLTISSDGEVWFTENA------ANKIGRITKK-G   87 (299)
T ss_dssp             TSCEEEEET----TTTEEEEECT--T-CCEEEEECSS---TTCCEEEEEECTTSCEEEEETT------TTEEEEECTT-S
T ss_pred             CCCEEEEec----CCCcEEEEcC--C-CCeEEecCCc---ccCceeeEEECCCCCEEEeCCC------CCeEEEECCC-C
Confidence            566776532    1235677898  6 6666554221   1111223333 25678887532      2468889886 4


Q ss_pred             eeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE-CCEEEEEccCCCCC
Q 045821          147 TWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM-DGKIYIRCSASAAT  224 (352)
Q Consensus       147 ~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~iyv~GG~~~~~  224 (352)
                      +...+...........++.. ++++|+.....  ..+.+||+ +++...+............+.. +|++|+....    
T Consensus        88 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~--~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----  160 (299)
T 2z2n_A           88 IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNG--NRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ----  160 (299)
T ss_dssp             CEEEEECSSTTCCEEEEEECTTSCEEEEETTT--TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT----
T ss_pred             cEEEEeCCCcCCCceeeEECCCCCEEEEecCC--ceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC----
Confidence            44443311111222333333 57888876432  57899999 6666655422111112222322 6789987421    


Q ss_pred             CceEEEEEeCCCCceeecCCCCCCCCCCcEEEE--CCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEE-
Q 045821          225 SHVCALVYEPSTDSWLHADANMASGWRGPAVVV--DDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVA-  301 (352)
Q Consensus       225 ~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-  301 (352)
                       ...+.+||+ +++...+..+.. ......+..  ++.||+.....+ .+.+||+ +++..... ++.. .....+++. 
T Consensus       161 -~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~~~~-~i~~~~~-~g~~~~~~-~~~~-~~~~~~i~~~  233 (299)
T 2z2n_A          161 -NNAIGRITE-SGDITEFKIPTP-ASGPVGITKGNDDALWFVEIIGN-KIGRITT-SGEITEFK-IPTP-NARPHAITAG  233 (299)
T ss_dssp             -TTEEEEECT-TCCEEEEECSST-TCCEEEEEECTTSSEEEEETTTT-EEEEECT-TCCEEEEE-CSST-TCCEEEEEEC
T ss_pred             -CCEEEEEcC-CCcEEEeeCCCC-CCcceeEEECCCCCEEEEccCCc-eEEEECC-CCcEEEEE-CCCC-CCCceeEEEC
Confidence             126889999 777765422111 111112332  567887764333 8999999 77776542 2211 112223333 


Q ss_pred             eCCEEEEEc-CCceEEEEEcC
Q 045821          302 IGKTIFVIG-KGCSAVVIDVG  321 (352)
Q Consensus       302 ~~~~i~v~g-G~~~~~~~d~~  321 (352)
                      -++.||+.. +...+..||+.
T Consensus       234 ~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          234 AGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             STTCEEEEETTTTEEEEEETT
T ss_pred             CCCCEEEeccCCceEEEECCC
Confidence            356788876 44567789983

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.91  E-value=0.0021  Score=54.49  Aligned_cols=195  Identities=14%  Similarity=0.010  Sum_probs=113.0

Q ss_pred             eEEEEEC-CEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCc
Q 045821          113 MGFEVLG-KNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNN  191 (352)
Q Consensus       113 ~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~  191 (352)
                      +.+...+ +.+|+..|..+    .+.+.++|+.+++-...-+++........+..++++|+....+  +.+.+||+.|.+
T Consensus        24 ~Gl~~~~dg~Lyvstg~~~----~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~--~~v~viD~~t~~   97 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLYG----RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLK--NIGFIYDRRTLS   97 (266)
T ss_dssp             EEEEECSTTEEEEEECSTT----TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTC--SEEEEEETTTTE
T ss_pred             ccEEEeCCCeEEEECCCCC----CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecC--CEEEEEECCCCc
Confidence            4556555 79999877422    4789999999997543322333233445666788999997644  789999999764


Q ss_pred             E-EEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCcee-ecCCCC-CCCC--CCcEEEECCEEEEEec
Q 045821          192 W-KLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWL-HADANM-ASGW--RGPAVVVDDALYVLDQ  266 (352)
Q Consensus       192 W-~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~-~~~~~~-~~~~--~~~~~~~~~~l~~~gg  266 (352)
                      = ..++. + .....+.+.-++++|+..|      ...+..+|+.+.+-. .++... ....  -......+++||+-..
T Consensus        98 v~~~i~~-g-~~~g~glt~Dg~~l~vs~g------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~  169 (266)
T 2iwa_A           98 NIKNFTH-Q-MKDGWGLATDGKILYGSDG------TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIW  169 (266)
T ss_dssp             EEEEEEC-C-SSSCCEEEECSSSEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEET
T ss_pred             EEEEEEC-C-CCCeEEEEECCCEEEEECC------CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecC
Confidence            2 22331 2 1222333334567888743      247999999886543 332211 1111  1112334889886654


Q ss_pred             CCCCeEEEEeCCCCceE---EccCCCC-------CcCCCCceEEEe--CCEEEEEcCCc-eEEEEEcCC
Q 045821          267 SSGTKLMMWQKESREWS---PVGRLST-------LLTRPPCKLVAI--GKTIFVIGKGC-SAVVIDVGN  322 (352)
Q Consensus       267 ~~~~~v~~yd~~~~~W~---~~~~~~~-------~~~~~~~~~~~~--~~~i~v~gG~~-~~~~~d~~~  322 (352)
                      .. +.|.+.|+.+++-.   .++.+..       .......+++..  ++++||-|+.. ++++.|...
T Consensus       170 ~~-~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          170 QT-DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             TS-SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             CC-CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            43 49999999987633   3321100       000111344433  56899998765 455666654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.87  E-value=0.0025  Score=53.68  Aligned_cols=225  Identities=11%  Similarity=0.024  Sum_probs=114.4

Q ss_pred             CCEEEE-EEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-CCEEEEEeCCCCCCCCCCeEEEEECCC
Q 045821           68 ETWIYA-FCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-GKNAYLLGGCGWSEDATSEVYCYDASM  145 (352)
Q Consensus        68 ~~~l~~-~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t  145 (352)
                      ++.+|+ ...    ..-.+..||+  .+.....+....   . ..-..++.. ++.+|+...       ...+.+||+.+
T Consensus        34 ~g~l~v~~~~----~~~~i~~~~~--~~~~~~~~~~~~---~-~~p~~i~~~~~g~l~v~~~-------~~~i~~~d~~~   96 (270)
T 1rwi_B           34 AGNVYVTSEG----MYGRVVKLAT--GSTGTTVLPFNG---L-YQPQGLAVDGAGTVYVTDF-------NNRVVTLAAGS   96 (270)
T ss_dssp             TCCEEEEECS----SSCEEEEECC-------EECCCCS---C-CSCCCEEECTTCCEEEEET-------TTEEEEECTTC
T ss_pred             CCCEEEEccC----CCCcEEEecC--CCcccceEeeCC---c-CCcceeEECCCCCEEEEcC-------CCEEEEEeCCC
Confidence            556887 422    2235666787  665544432211   1 111223333 567888754       24688999887


Q ss_pred             CeeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE-CCEEEEEccCCCC
Q 045821          146 NTWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM-DGKIYIRCSASAA  223 (352)
Q Consensus       146 ~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~iyv~GG~~~~  223 (352)
                      +....+..... .....++.. ++++|+.....  ..+.+||..+........ .....-...+.. +|++|+.....  
T Consensus        97 ~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~~~--~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~l~v~~~~~--  170 (270)
T 1rwi_B           97 NNQTVLPFDGL-NYPEGLAVDTQGAVYVADRGN--NRVVKLAAGSKTQTVLPF-TGLNDPDGVAVDNSGNVYVTDTDN--  170 (270)
T ss_dssp             SCCEECCCCSC-SSEEEEEECTTCCEEEEEGGG--TEEEEECTTCCSCEECCC-CSCCSCCCEEECTTCCEEEEEGGG--
T ss_pred             ceEeeeecCCc-CCCcceEECCCCCEEEEECCC--CEEEEEECCCceeEeecc-ccCCCceeEEEeCCCCEEEEECCC--
Confidence            76544432111 112233333 57888875432  568888877665443321 111111223332 68899874322  


Q ss_pred             CCceEEEEEeCCCCceeecCCCCCCCCCCcEEEE--CCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEE
Q 045821          224 TSHVCALVYEPSTDSWLHADANMASGWRGPAVVV--DDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVA  301 (352)
Q Consensus       224 ~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~  301 (352)
                         ..+.+||+.+..-......  .......+.+  ++.||+.....+ .+.+||+.+..-.......   .....+++.
T Consensus       171 ---~~i~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~g~l~v~~~~~~-~v~~~~~~~~~~~~~~~~~---~~~p~~i~~  241 (270)
T 1rwi_B          171 ---NRVVKLEAESNNQVVLPFT--DITAPWGIAVDEAGTVYVTEHNTN-QVVKLLAGSTTSTVLPFTG---LNTPLAVAV  241 (270)
T ss_dssp             ---TEEEEECTTTCCEEECCCS--SCCSEEEEEECTTCCEEEEETTTS-CEEEECTTCSCCEECCCCS---CSCEEEEEE
T ss_pred             ---CEEEEEecCCCceEeeccc--CCCCceEEEECCCCCEEEEECCCC-cEEEEcCCCCcceeeccCC---CCCceeEEE
Confidence               2688999877654433211  1111122333  567887764433 8999999876543322110   112233433


Q ss_pred             -eCCEEEEEcC-CceEEEEEcCCcc
Q 045821          302 -IGKTIFVIGK-GCSAVVIDVGNIG  324 (352)
Q Consensus       302 -~~~~i~v~gG-~~~~~~~d~~~~~  324 (352)
                       .++.||+... ...+.+|+.....
T Consensus       242 ~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          242 DSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             CTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CCCCCEEEEECCCCEEEEEcCCCcc
Confidence             3567888754 4466678876543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.82  E-value=0.00094  Score=59.71  Aligned_cols=222  Identities=16%  Similarity=0.139  Sum_probs=113.2

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE--CCEEEEEeCCCCCCCCCCeEEEEECCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL--GKNAYLLGGCGWSEDATSEVYCYDASM  145 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t  145 (352)
                      +..||+.++.+    -.+.++|.  .++.........   .  .-..++..  +..+|+.+..      ...+.+||+.+
T Consensus        43 g~~l~~~~~~d----~~i~v~d~--~~~~~~~~~~~~---~--~v~~~~~spdg~~l~~~~~~------~~~v~v~d~~~  105 (391)
T 1l0q_A           43 GTKVYVANAHS----NDVSIIDT--ATNNVIATVPAG---S--SPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTS  105 (391)
T ss_dssp             SSEEEEEEGGG----TEEEEEET--TTTEEEEEEECS---S--SEEEEEECTTSSEEEEEETT------TTEEEEEETTT
T ss_pred             CCEEEEECCCC----CeEEEEEC--CCCeEEEEEECC---C--CccceEECCCCCEEEEEECC------CCEEEEEECCC
Confidence            45677766431    24566788  766554433332   1  11222332  3456666532      35789999998


Q ss_pred             CeeEecCCCCCcceeeeeEEE-C-CEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE-CC-EEEEEccCC
Q 045821          146 NTWTDAAPMSTARCYFPCGVL-N-QKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM-DG-KIYIRCSAS  221 (352)
Q Consensus       146 ~~W~~~~~~~~~r~~~~~~~~-~-~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g-~iyv~GG~~  221 (352)
                      ++....-....  ....++.. + ..+|+.++.+  ..+.+||..+.+....-.....  ....+.. ++ .||+.++..
T Consensus       106 ~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~--~~v~~~d~~~~~~~~~~~~~~~--~~~~~~~~dg~~l~~~~~~~  179 (391)
T 1l0q_A          106 NTVAGTVKTGK--SPLGLALSPDGKKLYVTNNGD--KTVSVINTVTKAVINTVSVGRS--PKGIAVTPDGTKVYVANFDS  179 (391)
T ss_dssp             TEEEEEEECSS--SEEEEEECTTSSEEEEEETTT--TEEEEEETTTTEEEEEEECCSS--EEEEEECTTSSEEEEEETTT
T ss_pred             CeEEEEEeCCC--CcceEEECCCCCEEEEEeCCC--CEEEEEECCCCcEEEEEecCCC--cceEEECCCCCEEEEEeCCC
Confidence            87543322211  11223322 3 3577777644  6899999998875543222111  1222222 44 677775433


Q ss_pred             CCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEE--ECCE-EEEEecC-CCCeEEEEeCCCCceEEccCCCCCcCCCCc
Q 045821          222 AATSHVCALVYEPSTDSWLHADANMASGWRGPAVV--VDDA-LYVLDQS-SGTKLMMWQKESREWSPVGRLSTLLTRPPC  297 (352)
Q Consensus       222 ~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~--~~~~-l~~~gg~-~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~  297 (352)
                           ..+..||..+++....-..   ......+.  -+++ |++.+.. ....+.+||+.+.+-...-....    ...
T Consensus       180 -----~~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~  247 (391)
T 1l0q_A          180 -----MSISVIDTVTNSVIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP----DPA  247 (391)
T ss_dssp             -----TEEEEEETTTTEEEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS----SEE
T ss_pred             -----CEEEEEECCCCeEEEEEec---CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC----Ccc
Confidence                 2588899987765433211   11111122  2454 5544421 22489999998765432211111    112


Q ss_pred             eEEE--eCCEEEEEcCCc-eEEEEEcCCcc
Q 045821          298 KLVA--IGKTIFVIGKGC-SAVVIDVGNIG  324 (352)
Q Consensus       298 ~~~~--~~~~i~v~gG~~-~~~~~d~~~~~  324 (352)
                      ++..  .+..||+.++.+ .+.+||+++..
T Consensus       248 ~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~  277 (391)
T 1l0q_A          248 GIAVTPDGKKVYVALSFXNTVSVIDTATNT  277 (391)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence            2222  244677775544 56689988654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.80  E-value=0.0015  Score=54.88  Aligned_cols=160  Identities=16%  Similarity=-0.045  Sum_probs=99.8

Q ss_pred             eeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCcee
Q 045821          161 FPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWL  240 (352)
Q Consensus       161 ~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~  240 (352)
                      ......++.+|+..|....+.+.++|+.|++=..--+++......+.+..+++||++....     ..+++||+.+.+-.
T Consensus        46 qGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~-----~~v~v~D~~t~~~~  120 (262)
T 3nol_A           46 EGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKN-----GLGFVWNIRNLRQV  120 (262)
T ss_dssp             EEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS-----SEEEEEETTTCCEE
T ss_pred             ceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeC-----CEEEEEECccCcEE
Confidence            4555568999999996655789999999997544434554444556777899999995322     47999999887653


Q ss_pred             -ecCCCCCCCCCCcEEEE-CCEEEEEecCCCCeEEEEeCCCCceE-EccCCCCCcC-CCCceEEEeCCEEEEEc-CCceE
Q 045821          241 -HADANMASGWRGPAVVV-DDALYVLDQSSGTKLMMWQKESREWS-PVGRLSTLLT-RPPCKLVAIGKTIFVIG-KGCSA  315 (352)
Q Consensus       241 -~~~~~~~~~~~~~~~~~-~~~l~~~gg~~~~~v~~yd~~~~~W~-~~~~~~~~~~-~~~~~~~~~~~~i~v~g-G~~~~  315 (352)
                       +++...    .+.+++. ++.||+..| . +.++.+|+++.+-. .+.-.....+ ...-.+...+++||+-- ..+.+
T Consensus       121 ~ti~~~~----eG~glt~dg~~L~~SdG-s-~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I  194 (262)
T 3nol_A          121 RSFNYDG----EGWGLTHNDQYLIMSDG-T-PVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKI  194 (262)
T ss_dssp             EEEECSS----CCCCEEECSSCEEECCS-S-SEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEE
T ss_pred             EEEECCC----CceEEecCCCEEEEECC-C-CeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeE
Confidence             343321    3334444 456777766 3 38999999986533 2221111001 11112334588999754 45567


Q ss_pred             EEEEcCCcccccceEE
Q 045821          316 VVIDVGNIGNIGGIMV  331 (352)
Q Consensus       316 ~~~d~~~~~w~~~~~~  331 (352)
                      .++|+++..-.+...+
T Consensus       195 ~vIDp~tG~V~~~Id~  210 (262)
T 3nol_A          195 VRIDPETGKVTGIIDL  210 (262)
T ss_dssp             EEECTTTCBEEEEEEC
T ss_pred             EEEECCCCcEEEEEEC
Confidence            7899988764443333

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.73  E-value=0.013  Score=50.34  Aligned_cols=190  Identities=10%  Similarity=0.080  Sum_probs=96.2

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEe-cCCCCCcceeeeeEE-ECCEEEEEeCCCCCCceEEEeCCCCcEEEec
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTD-AAPMSTARCYFPCGV-LNQKIYCIGGLGDTHSWDVYDPRTNNWKLHT  196 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~-~~~~~~~r~~~~~~~-~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~  196 (352)
                      ++..++.|+.      ...+.+||..+++-.. +... .... ..+.. -++..++.|+.+  ..+.+||..+.+-...-
T Consensus        76 ~~~~l~s~~~------d~~i~vwd~~~~~~~~~~~~~-~~~v-~~~~~~~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~  145 (312)
T 4ery_A           76 DSNLLVSASD------DKTLKIWDVSSGKCLKTLKGH-SNYV-FCCNFNPQSNLIVSGSFD--ESVRIWDVKTGKCLKTL  145 (312)
T ss_dssp             TSSEEEEEET------TSEEEEEETTTCCEEEEEECC-SSCE-EEEEECSSSSEEEEEETT--SCEEEEETTTCCEEEEE
T ss_pred             CCCEEEEECC------CCEEEEEECCCCcEEEEEcCC-CCCE-EEEEEcCCCCEEEEEeCC--CcEEEEECCCCEEEEEe
Confidence            4556666654      3468888988765322 1111 1111 11111 145666667655  67899999887643221


Q ss_pred             CCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeec-CCCCCCCCCCcEEEECCEEEEEecCCCCeEEEE
Q 045821          197 EPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHA-DANMASGWRGPAVVVDDALYVLDQSSGTKLMMW  275 (352)
Q Consensus       197 ~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~-~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~y  275 (352)
                      .............-++++++.|+.++     .+..||..+.+-... ...............+++.++.++.++ .+.+|
T Consensus       146 ~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~iw  219 (312)
T 4ery_A          146 PAHSDPVSAVHFNRDGSLIVSSSYDG-----LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TLKLW  219 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTT-EEEEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCC-eEEEE
Confidence            11111111111222667777766553     478889877654322 111111111111223566677777665 89999


Q ss_pred             eCCCCceEEccCCCCCcCCC-CceEEEeCCEEEEEcCCce-EEEEEcCCcc
Q 045821          276 QKESREWSPVGRLSTLLTRP-PCKLVAIGKTIFVIGKGCS-AVVIDVGNIG  324 (352)
Q Consensus       276 d~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~i~v~gG~~~-~~~~d~~~~~  324 (352)
                      |..+..-...-......... .......++.+++.|+.+. +.++|+++..
T Consensus       220 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~  270 (312)
T 4ery_A          220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE  270 (312)
T ss_dssp             ETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC
T ss_pred             ECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch
Confidence            99876543221111110111 1122234567777777664 6689987654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.71  E-value=0.0042  Score=54.76  Aligned_cols=234  Identities=11%  Similarity=0.115  Sum_probs=112.6

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-CCEEEEEeCCCCCCCCCCeEEEEECCCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-GKNAYLLGGCGWSEDATSEVYCYDASMN  146 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~  146 (352)
                      ++.++++|+.  .+  .+.+||.  .+..+..+..+..  ....-.++... ++..++.|+.+      ..+.+||..++
T Consensus        19 ~~~~l~~~~~--d~--~v~i~~~--~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~   84 (372)
T 1k8k_C           19 DRTQIAICPN--NH--EVHIYEK--SGNKWVQVHELKE--HNGQVTGVDWAPDSNRIVTCGTD------RNAYVWTLKGR   84 (372)
T ss_dssp             TSSEEEEECS--SS--EEEEEEE--ETTEEEEEEEEEC--CSSCEEEEEEETTTTEEEEEETT------SCEEEEEEETT
T ss_pred             CCCEEEEEeC--CC--EEEEEeC--CCCcEEeeeeecC--CCCcccEEEEeCCCCEEEEEcCC------CeEEEEECCCC
Confidence            4455666653  12  4555577  6666555544431  11111222222 45566666532      45888898888


Q ss_pred             eeEecCCCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCc-EEEecCCCCccc--ceeEEE-ECCEEEEEccC
Q 045821          147 TWTDAAPMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNN-WKLHTEPNIFTE--IEDSFV-MDGKIYIRCSA  220 (352)
Q Consensus       147 ~W~~~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~-W~~~~~~~~~~~--~~~~~~-~~g~iyv~GG~  220 (352)
                      ++.....+...........+  ++..++.|+.+  ..+.+||..+.. |.........+.  ...... -++++++.|+.
T Consensus        85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  162 (372)
T 1k8k_C           85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGS--RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC  162 (372)
T ss_dssp             EEEEEEECCCCSSCEEEEEECTTSSEEEEEETT--SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             eeeeeEEeecCCCceeEEEECCCCCEEEEEeCC--CEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence            76544322211111112222  45666666654  567777777654 333221111111  112222 26677777655


Q ss_pred             CCCCCceEEEEEeCCCC---------ceee-------cCCCCCCCCCCcEEE--ECCEEEEEecCCCCeEEEEeCCCCce
Q 045821          221 SAATSHVCALVYEPSTD---------SWLH-------ADANMASGWRGPAVV--VDDALYVLDQSSGTKLMMWQKESREW  282 (352)
Q Consensus       221 ~~~~~~~~i~~yd~~~~---------~W~~-------~~~~~~~~~~~~~~~--~~~~l~~~gg~~~~~v~~yd~~~~~W  282 (352)
                      ++     .+..||....         .|..       +............+.  .++..++.++.++ .+.+||..+.+-
T Consensus       163 dg-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~  236 (372)
T 1k8k_C          163 DF-----KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS-TVCLADADKKMA  236 (372)
T ss_dssp             TS-----CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT-EEEEEEGGGTTE
T ss_pred             CC-----CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCC-EEEEEECCCCce
Confidence            42     4677775321         1111       100001111111222  2566677777665 899999987653


Q ss_pred             EEccCCCCCcCCCCceEEEeCCEEEEEcCCceEEEEEcCC--ccc
Q 045821          283 SPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCSAVVIDVGN--IGN  325 (352)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~d~~~--~~w  325 (352)
                      ...-....  ..........++++++.|....+.+||...  ..|
T Consensus       237 ~~~~~~~~--~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~  279 (372)
T 1k8k_C          237 VATLASET--LPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKL  279 (372)
T ss_dssp             EEEEECSS--CCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEE
T ss_pred             eEEEccCC--CCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceE
Confidence            32211111  011112223477877777555677899877  555

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.68  E-value=0.019  Score=48.71  Aligned_cols=222  Identities=11%  Similarity=-0.001  Sum_probs=118.2

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-CCEEEEEeCCCCCCCCCCeEEEEECCCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-GKNAYLLGGCGWSEDATSEVYCYDASMN  146 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~  146 (352)
                      ++.||+...    ..-.+..||+  . +....+.. +.  ....-..++.- ++.+|+...      ....+.+||+. +
T Consensus        30 ~g~l~v~~~----~~~~v~~~~~--~-~~~~~~~~-~~--~~~~~~~i~~~~~g~l~v~~~------~~~~v~~~d~~-g   92 (300)
T 2qc5_A           30 DGKVWFTQH----KANKISSLDQ--S-GRIKEFEV-PT--PDAKVMCLIVSSLGDIWFTEN------GANKIGKLSKK-G   92 (300)
T ss_dssp             TSCEEEEET----TTTEEEEECT--T-SCEEEEEC-SS--TTCCEEEEEECTTSCEEEEET------TTTEEEEECTT-S
T ss_pred             CCCEEEEcC----CCCeEEEECC--C-CceEEEEC-CC--CCCcceeEEECCCCCEEEEec------CCCeEEEECCC-C
Confidence            567887632    1235677898  6 66665432 21  11112233332 567888753      13568899988 6


Q ss_pred             eeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEE--ECCEEEEEccCCCC
Q 045821          147 TWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFV--MDGKIYIRCSASAA  223 (352)
Q Consensus       147 ~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~--~~g~iyv~GG~~~~  223 (352)
                      +...+...........++.. ++++|+.....  ..+.+||+. ++..... .+..........  -+|+||+.....  
T Consensus        93 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~--~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~~--  166 (300)
T 2qc5_A           93 GFTEYPLPQPDSGPYGITEGLNGDIWFTQLNG--DRIGKLTAD-GTIYEYD-LPNKGSYPAFITLGSDNALWFTENQN--  166 (300)
T ss_dssp             CEEEEECSSTTCCEEEEEECSTTCEEEEETTT--TEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSSEEEEETTT--
T ss_pred             CeEEecCCCCCCCCccceECCCCCEEEEccCC--CeEEEECCC-CCEEEcc-CCCCCCCceeEEECCCCCEEEEecCC--
Confidence            66544321111222333333 57888876432  578899998 6665443 221112222222  367898874221  


Q ss_pred             CCceEEEEEeCCCCceeecCCCCCCCCCCcEEEE--CCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEE
Q 045821          224 TSHVCALVYEPSTDSWLHADANMASGWRGPAVVV--DDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVA  301 (352)
Q Consensus       224 ~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~  301 (352)
                         ..+.+||+ +++...+..+.. ......+..  ++.||+.....+ .+.+||+ ++++.... ++.. .....+++.
T Consensus       167 ---~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~d~~g~l~v~~~~~~-~i~~~~~-~g~~~~~~-~~~~-~~~~~~i~~  237 (300)
T 2qc5_A          167 ---NSIGRITN-TGKLEEYPLPTN-AAAPVGITSGNDGALWFVEIMGN-KIGRITT-TGEISEYD-IPTP-NARPHAITA  237 (300)
T ss_dssp             ---TEEEEECT-TCCEEEEECSST-TCCEEEEEECTTSSEEEEETTTT-EEEEECT-TCCEEEEE-CSST-TCCEEEEEE
T ss_pred             ---CeEEEECC-CCcEEEeeCCCC-CCCcceEEECCCCCEEEEccCCC-EEEEEcC-CCcEEEEE-CCCC-CCCceEEEE
Confidence               25889998 666665432111 111122333  577887654333 7999999 56665543 2211 112223333


Q ss_pred             -eCCEEEEEcC-CceEEEEEcC
Q 045821          302 -IGKTIFVIGK-GCSAVVIDVG  321 (352)
Q Consensus       302 -~~~~i~v~gG-~~~~~~~d~~  321 (352)
                       -++.||+... ...+..||+.
T Consensus       238 d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          238 GKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             CSTTCEEEEETTTTEEEEECTT
T ss_pred             CCCCCEEEeccCCCeEEEECCC
Confidence             2567888763 3567788873

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.59  E-value=0.007  Score=53.35  Aligned_cols=234  Identities=6%  Similarity=0.043  Sum_probs=111.1

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE--C--CEEEEEeCCCCCCCCCCeEEEEEC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL--G--KNAYLLGGCGWSEDATSEVYCYDA  143 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~d~  143 (352)
                      ++..++.|+.  .+...+|  |.  ....+..+..+..   .........+  .  +.+++.|+.+      ..+.+||.
T Consensus        22 ~~~~l~~~~~--dg~i~iw--~~--~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~l~s~~~d------g~v~iwd~   86 (379)
T 3jrp_A           22 YGKRLATCSS--DKTIKIF--EV--EGETHKLIDTLTG---HEGPVWRVDWAHPKFGTILASCSYD------GKVLIWKE   86 (379)
T ss_dssp             SSSEEEEEET--TSCEEEE--EE--ETTEEEEEEEECC---CSSCEEEEEECCGGGCSEEEEEETT------SCEEEEEE
T ss_pred             CCCEEEEEEC--CCcEEEE--ec--CCCcceeeeEecC---CCCcEEEEEeCCCCCCCEEEEeccC------CEEEEEEc
Confidence            4445556653  2334444  55  4445555444431   1122222333  2  5566666543      45888999


Q ss_pred             CCCeeEecCCCCCcceeeeeEEE--C--CEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcc-cceeEEEE--------
Q 045821          144 SMNTWTDAAPMSTARCYFPCGVL--N--QKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFT-EIEDSFVM--------  210 (352)
Q Consensus       144 ~t~~W~~~~~~~~~r~~~~~~~~--~--~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~-~~~~~~~~--------  210 (352)
                      .+++|..+..+.........+.+  +  +..++.|+.+  ..+.+||..+..-.....+.... ........        
T Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  164 (379)
T 3jrp_A           87 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD--GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  164 (379)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT--SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-----
T ss_pred             CCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC--CcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccc
Confidence            99887665544322222222222  3  5566666655  67888998876321110010111 11112221        


Q ss_pred             ------CCEEEEEccCCCCCCceEEEEEeCCCC--ceeecCCCCCCCCCCcEEE--EC---CEEEEEecCCCCeEEEEeC
Q 045821          211 ------DGKIYIRCSASAATSHVCALVYEPSTD--SWLHADANMASGWRGPAVV--VD---DALYVLDQSSGTKLMMWQK  277 (352)
Q Consensus       211 ------~g~iyv~GG~~~~~~~~~i~~yd~~~~--~W~~~~~~~~~~~~~~~~~--~~---~~l~~~gg~~~~~v~~yd~  277 (352)
                            ++.+++.|+.++     .+..||..+.  .+..+.....+...-..+.  -+   +.+++.++.++ .+.+||.
T Consensus       165 ~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg-~i~iwd~  238 (379)
T 3jrp_A          165 EHNGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR-TCIIWTQ  238 (379)
T ss_dssp             -----CTTCEEEEEETTS-----CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS-CEEEEEE
T ss_pred             cccCCCCCCEEEEEeCCC-----eEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCC-EEEEEeC
Confidence                  467777765543     3666666443  3443322111111111222  24   78888888766 8899998


Q ss_pred             CCCce----EEccCCCCCcCCCCceEE-EeCCEEEEEcCCc-eEEEEEcCC-cccc
Q 045821          278 ESREW----SPVGRLSTLLTRPPCKLV-AIGKTIFVIGKGC-SAVVIDVGN-IGNI  326 (352)
Q Consensus       278 ~~~~W----~~~~~~~~~~~~~~~~~~-~~~~~i~v~gG~~-~~~~~d~~~-~~w~  326 (352)
                      .+...    ........  .....++. ..+++.++.++.+ .+.+||+.. ..|.
T Consensus       239 ~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~  292 (379)
T 3jrp_A          239 DNEQGPWKKTLLKEEKF--PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE  292 (379)
T ss_dssp             SSTTSCCEEEESSSSCC--SSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEE
T ss_pred             CCCCccceeeeeccccC--CCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCccc
Confidence            87631    11111111  11111222 2355555555444 466888773 3444

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.56  E-value=0.022  Score=49.63  Aligned_cols=197  Identities=14%  Similarity=0.080  Sum_probs=100.5

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE-C-CEEEEEeCCCCCCceEEEeCCCCcEE-Ee
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-N-QKIYCIGGLGDTHSWDVYDPRTNNWK-LH  195 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~-~~iyv~gG~~~~~~v~~yd~~t~~W~-~~  195 (352)
                      ++.+|+.............++++|+.+.+....-+..  ......+.. + +.+|+.++.+  ..+.+||+.+.+-. .+
T Consensus        52 g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~v~~~~~--~~v~~~d~~~~~~~~~~  127 (353)
T 3vgz_A           52 ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND--LKPFGATINNTTQTLWFGNTVN--SAVTAIDAKTGEVKGRL  127 (353)
T ss_dssp             TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES--SCCCSEEEETTTTEEEEEETTT--TEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC--CCcceEEECCCCCEEEEEecCC--CEEEEEeCCCCeeEEEE
Confidence            3567776532111112467899999887643221111  112233333 3 4588877644  68999999987642 23


Q ss_pred             cCCCCcc-------c-ceeEEEE-C-CEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECC-EEEEE
Q 045821          196 TEPNIFT-------E-IEDSFVM-D-GKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDD-ALYVL  264 (352)
Q Consensus       196 ~~~~~~~-------~-~~~~~~~-~-g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~l~~~  264 (352)
                      + .....       . ....+.. + +.+|+.+...    ...++.+|+.+.+-...-..........++.-++ .+|+.
T Consensus       128 ~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  202 (353)
T 3vgz_A          128 V-LDDRKRTEEVRPLQPRELVADDATNTVYISGIGK----ESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTT  202 (353)
T ss_dssp             E-SCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS----SCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEE
T ss_pred             e-cCCCccccccCCCCCceEEECCCCCEEEEEecCC----CceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEE
Confidence            2 11111       0 1122222 4 4677774221    1358899998765433211111112233444455 45555


Q ss_pred             ecCCCCeEEEEeCCCCceEEccCCCCC-cCCCCceEEE--eCCEEEEEcCC-ceEEEEEcCCcccc
Q 045821          265 DQSSGTKLMMWQKESREWSPVGRLSTL-LTRPPCKLVA--IGKTIFVIGKG-CSAVVIDVGNIGNI  326 (352)
Q Consensus       265 gg~~~~~v~~yd~~~~~W~~~~~~~~~-~~~~~~~~~~--~~~~i~v~gG~-~~~~~~d~~~~~w~  326 (352)
                      .. .+ .+.+||+.+++-...-..+.. ......+++.  -++.+|+.+.. ..+.+||+++....
T Consensus       203 ~~-~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  266 (353)
T 3vgz_A          203 NA-DG-ELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNIL  266 (353)
T ss_dssp             CT-TS-EEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEE
T ss_pred             cC-CC-eEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence            43 33 899999988765433222111 0111112222  35668877644 56778999776543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.55  E-value=0.008  Score=52.20  Aligned_cols=239  Identities=10%  Similarity=0.011  Sum_probs=110.4

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-CC-EEEEEeCCCCCCCCCCeEEEEECCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-GK-NAYLLGGCGWSEDATSEVYCYDASM  145 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~d~~t  145 (352)
                      +..||+.+..  .+....|.+++  .++.+..+...+..  ... ..++.. ++ .+|+.+..      ...+.+||...
T Consensus        49 g~~l~~~~~~--~~~v~~~~~~~--~~~~~~~~~~~~~~--~~~-~~~~~s~dg~~l~~~~~~------~~~i~~~d~~~  115 (343)
T 1ri6_A           49 KRYLYVGVRP--EFRVLAYRIAP--DDGALTFAAESALP--GSL-THISTDHQGQFVFVGSYN------AGNVSVTRLED  115 (343)
T ss_dssp             SSEEEEEETT--TTEEEEEEECT--TTCCEEEEEEEECS--SCC-SEEEECTTSSEEEEEETT------TTEEEEEEEET
T ss_pred             CCEEEEeecC--CCeEEEEEecC--CCCceeeccccccC--CCC-cEEEEcCCCCEEEEEecC------CCeEEEEECCC
Confidence            4556655332  24555665665  67777766544321  111 222222 33 46665431      24578888732


Q ss_pred             Ce-eEecCCCCCcceeeeeEEE-C-CEEEEEeCCCCCCceEEEeCCC-CcEEEec--C--CCCcccceeEEE-ECC-EEE
Q 045821          146 NT-WTDAAPMSTARCYFPCGVL-N-QKIYCIGGLGDTHSWDVYDPRT-NNWKLHT--E--PNIFTEIEDSFV-MDG-KIY  215 (352)
Q Consensus       146 ~~-W~~~~~~~~~r~~~~~~~~-~-~~iyv~gG~~~~~~v~~yd~~t-~~W~~~~--~--~~~~~~~~~~~~-~~g-~iy  215 (352)
                      +. ...+...........++.. + ..+|+.+..+  ..+.+||..+ .+...+.  .  .+.......++. -++ .+|
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~  193 (343)
T 1ri6_A          116 GLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ--DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY  193 (343)
T ss_dssp             TEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG--TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred             CccccccccccCCCCceEEEECCCCCEEEEecCCC--CEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEE
Confidence            22 2222212211112223332 3 3677765332  6788999987 6665322  1  111111112222 245 477


Q ss_pred             EEccCCCCCCceEEEEEeC--CCCceeec---CCCCCC---CCCCcEEEE--CC-EEEEEecCCCCeEEEEeCC--CCce
Q 045821          216 IRCSASAATSHVCALVYEP--STDSWLHA---DANMAS---GWRGPAVVV--DD-ALYVLDQSSGTKLMMWQKE--SREW  282 (352)
Q Consensus       216 v~GG~~~~~~~~~i~~yd~--~~~~W~~~---~~~~~~---~~~~~~~~~--~~-~l~~~gg~~~~~v~~yd~~--~~~W  282 (352)
                      +.+...     ..+..||.  .+.++..+   ...+..   ......+.+  ++ .||+.+...+ .+.+||..  ++++
T Consensus       194 ~~~~~~-----~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~-~i~v~d~~~~~~~~  267 (343)
T 1ri6_A          194 CVNELN-----SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS-LITVFSVSEDGSVL  267 (343)
T ss_dssp             EEETTT-----TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT-EEEEEEECTTSCCE
T ss_pred             EEeCCC-----CEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCC-EEEEEEEcCCCCce
Confidence            764222     25777777  34444322   111111   111112322  34 5665554333 89999887  5667


Q ss_pred             EEccCCCCCcCCCCceEEEeCCEEEEEcC-CceEEEE--EcCCccccc
Q 045821          283 SPVGRLSTLLTRPPCKLVAIGKTIFVIGK-GCSAVVI--DVGNIGNIG  327 (352)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~i~v~gG-~~~~~~~--d~~~~~w~~  327 (352)
                      ..+..++....-...++..-+..||+.++ ...+.+|  |.++..+..
T Consensus       268 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~  315 (343)
T 1ri6_A          268 SKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHE  315 (343)
T ss_dssp             EEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEE
T ss_pred             EEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeE
Confidence            76654443211111222222445777664 3456677  554555544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.55  E-value=0.009  Score=50.61  Aligned_cols=156  Identities=12%  Similarity=-0.033  Sum_probs=94.6

Q ss_pred             eeeEEEC-CEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCce
Q 045821          161 FPCGVLN-QKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSW  239 (352)
Q Consensus       161 ~~~~~~~-~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W  239 (352)
                      +.++..+ +.+|+..|....+.+.++|+.|++=...-+++........+..+++||+..-.     ...+.+||+.+.+=
T Consensus        24 ~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~-----~~~v~viD~~t~~v   98 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL-----KNIGFIYDRRTLSN   98 (266)
T ss_dssp             EEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT-----CSEEEEEETTTTEE
T ss_pred             ccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec-----CCEEEEEECCCCcE
Confidence            4555554 89999988544488999999998754432333333444556678899999522     24799999987643


Q ss_pred             -eecCCCCCCCCCCcEEEE-CCEEEEEecCCCCeEEEEeCCCCceE-Ecc--CCCCCcCCCCceEEEeCCEEEEEc-CCc
Q 045821          240 -LHADANMASGWRGPAVVV-DDALYVLDQSSGTKLMMWQKESREWS-PVG--RLSTLLTRPPCKLVAIGKTIFVIG-KGC  313 (352)
Q Consensus       240 -~~~~~~~~~~~~~~~~~~-~~~l~~~gg~~~~~v~~yd~~~~~W~-~~~--~~~~~~~~~~~~~~~~~~~i~v~g-G~~  313 (352)
                       ..++..   .-.+..+.. ++.+|+..|  .+.++.+|+++.+-. .+.  .-+.+ ......+...+++||+-. ..+
T Consensus        99 ~~~i~~g---~~~g~glt~Dg~~l~vs~g--s~~l~viD~~t~~v~~~I~Vg~~~~p-~~~~nele~~dg~lyvn~~~~~  172 (266)
T 2iwa_A           99 IKNFTHQ---MKDGWGLATDGKILYGSDG--TSILYEIDPHTFKLIKKHNVKYNGHR-VIRLNELEYINGEVWANIWQTD  172 (266)
T ss_dssp             EEEEECC---SSSCCEEEECSSSEEEECS--SSEEEEECTTTCCEEEEEECEETTEE-CCCEEEEEEETTEEEEEETTSS
T ss_pred             EEEEECC---CCCeEEEEECCCEEEEECC--CCeEEEEECCCCcEEEEEEECCCCcc-cccceeEEEECCEEEEecCCCC
Confidence             233322   112344444 456787664  349999999886532 222  11111 111223344488999765 455


Q ss_pred             eEEEEEcCCccccc
Q 045821          314 SAVVIDVGNIGNIG  327 (352)
Q Consensus       314 ~~~~~d~~~~~w~~  327 (352)
                      .+.++|+++..-.+
T Consensus       173 ~V~vID~~tg~V~~  186 (266)
T 2iwa_A          173 CIARISAKDGTLLG  186 (266)
T ss_dssp             EEEEEETTTCCEEE
T ss_pred             eEEEEECCCCcEEE
Confidence            67789998866433

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.51  E-value=0.012  Score=51.18  Aligned_cols=186  Identities=13%  Similarity=0.092  Sum_probs=94.2

Q ss_pred             CEEEEEeCCCCCCCCCCeEEEEECCCCeeE-ecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecC
Q 045821          120 KNAYLLGGCGWSEDATSEVYCYDASMNTWT-DAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTE  197 (352)
Q Consensus       120 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~-~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~  197 (352)
                      +.+++.|+.      ...+.+||..+++-. .+...+..  ...++.. +++.++.|+.+  ..+.+||..+..-...-.
T Consensus        92 ~~~l~s~s~------D~~i~lWd~~~~~~~~~~~~~~~~--~~~~~~spdg~~l~~g~~d--g~v~i~~~~~~~~~~~~~  161 (321)
T 3ow8_A           92 LPIAASSSL------DAHIRLWDLENGKQIKSIDAGPVD--AWTLAFSPDSQYLATGTHV--GKVNIFGVESGKKEYSLD  161 (321)
T ss_dssp             SSEEEEEET------TSEEEEEETTTTEEEEEEECCTTC--CCCEEECTTSSEEEEECTT--SEEEEEETTTCSEEEEEE
T ss_pred             CCEEEEEeC------CCcEEEEECCCCCEEEEEeCCCcc--EEEEEECCCCCEEEEEcCC--CcEEEEEcCCCceeEEec
Confidence            345555543      346788898877532 22211111  1112222 56666777655  678889988775332211


Q ss_pred             CCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeC
Q 045821          198 PNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQK  277 (352)
Q Consensus       198 ~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~  277 (352)
                      .........+..-+++.++.|+.++     .+..||..+.+-...-..............++++++.|+.++ .+.+||.
T Consensus       162 ~~~~~v~~~~~spdg~~lasg~~dg-----~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg-~i~iwd~  235 (321)
T 3ow8_A          162 TRGKFILSIAYSPDGKYLASGAIDG-----IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG-YIKIYDV  235 (321)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTS-CEEEEET
T ss_pred             CCCceEEEEEECCCCCEEEEEcCCC-----eEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCC-eEEEEEC
Confidence            1111111112223677777766553     478889877654322111111111112233677777887766 8999999


Q ss_pred             CCCceEEccCCCCCcCCCCceEEE-eCCEEEEEcCCc-eEEEEEcCCcc
Q 045821          278 ESREWSPVGRLSTLLTRPPCKLVA-IGKTIFVIGKGC-SAVVIDVGNIG  324 (352)
Q Consensus       278 ~~~~W~~~~~~~~~~~~~~~~~~~-~~~~i~v~gG~~-~~~~~d~~~~~  324 (352)
                      .+......  +... .....++.. .+++.++.|+.+ .+.++|+.+..
T Consensus       236 ~~~~~~~~--~~~h-~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~  281 (321)
T 3ow8_A          236 QHANLAGT--LSGH-ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT  281 (321)
T ss_dssp             TTCCEEEE--ECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             CCcceeEE--EcCC-CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE
Confidence            87654322  1110 011112222 255556666555 46689987644

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.50  E-value=0.0096  Score=49.98  Aligned_cols=185  Identities=14%  Similarity=0.056  Sum_probs=96.2

Q ss_pred             CCEEEE-EeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEec
Q 045821          119 GKNAYL-LGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHT  196 (352)
Q Consensus       119 ~~~iyv-~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~  196 (352)
                      ++.+|+ ...      ....+.+||+.+.....+..... .....++.. ++++|+... .  ..+.+||+.+.....+.
T Consensus        34 ~g~l~v~~~~------~~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~-~--~~i~~~d~~~~~~~~~~  103 (270)
T 1rwi_B           34 AGNVYVTSEG------MYGRVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDF-N--NRVVTLAAGSNNQTVLP  103 (270)
T ss_dssp             TCCEEEEECS------SSCEEEEECC-----EECCCCSC-CSCCCEEECTTCCEEEEET-T--TEEEEECTTCSCCEECC
T ss_pred             CCCEEEEccC------CCCcEEEecCCCcccceEeeCCc-CCcceeEECCCCCEEEEcC-C--CEEEEEeCCCceEeeee
Confidence            567888 432      23568888887766544432111 112233333 567888875 2  67899999887655443


Q ss_pred             CCCCcccceeEEEE-CCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEE
Q 045821          197 EPNIFTEIEDSFVM-DGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMW  275 (352)
Q Consensus       197 ~~~~~~~~~~~~~~-~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~y  275 (352)
                      .. ....-...+.. +|++|+.....     ..+.++|..+.............-.+.++.-+++||+.....+ .+.+|
T Consensus       104 ~~-~~~~p~~i~~~~~g~l~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~-~i~~~  176 (270)
T 1rwi_B          104 FD-GLNYPEGLAVDTQGAVYVADRGN-----NRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNN-RVVKL  176 (270)
T ss_dssp             CC-SCSSEEEEEECTTCCEEEEEGGG-----TEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGT-EEEEE
T ss_pred             cC-CcCCCcceEECCCCCEEEEECCC-----CEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCC-EEEEE
Confidence            21 11111222222 67899974322     2588888766554433211111111122223578888765433 89999


Q ss_pred             eCCCCceEEccCCCCCcCCCCceEEEe-CCEEEEEcC-CceEEEEEcCCc
Q 045821          276 QKESREWSPVGRLSTLLTRPPCKLVAI-GKTIFVIGK-GCSAVVIDVGNI  323 (352)
Q Consensus       276 d~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~i~v~gG-~~~~~~~d~~~~  323 (352)
                      |+.+..-.......   .....+++.. ++.||+... ...+..||+...
T Consensus       177 ~~~~~~~~~~~~~~---~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~  223 (270)
T 1rwi_B          177 EAESNNQVVLPFTD---ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  223 (270)
T ss_dssp             CTTTCCEEECCCSS---CCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred             ecCCCceEeecccC---CCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence            99876644332111   1112334433 458888764 445778887653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.49  E-value=0.015  Score=50.18  Aligned_cols=187  Identities=9%  Similarity=-0.029  Sum_probs=94.4

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceee-eeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEec
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYF-PCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHT  196 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~-~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~  196 (352)
                      ++..++.|+.      ...+.+||..+++......+....... .++.. ++..++.++.+  ..+.+||..+.+....-
T Consensus       108 ~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~v~~~d~~~~~~~~~~  179 (337)
T 1gxr_A          108 DGCTLIVGGE------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD--GNIAVWDLHNQTLVRQF  179 (337)
T ss_dssp             TSSEEEEEES------SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT--SCEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEcC------CCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC--CcEEEEeCCCCceeeee
Confidence            4555555543      356889999887644333222111111 12222 55666666654  67899999887643322


Q ss_pred             CCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEe
Q 045821          197 EPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQ  276 (352)
Q Consensus       197 ~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd  276 (352)
                      .............-+++.++.++.++     .+..||..+.+-...-. ............+++.+++++.++ .+.+||
T Consensus       180 ~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~-~i~~~~  252 (337)
T 1gxr_A          180 QGHTDGASCIDISNDGTKLWTGGLDN-----TVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESS-NVEVLH  252 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTS-CEEEEE
T ss_pred             ecccCceEEEEECCCCCEEEEEecCC-----cEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCC-cEEEEE
Confidence            11111111111222666666665442     58888987765332211 111111111223667777777655 899999


Q ss_pred             CCCCceEEccCCCCCcCCCCceEEE-eCCEEEEEcCCc-eEEEEEcCCcc
Q 045821          277 KESREWSPVGRLSTLLTRPPCKLVA-IGKTIFVIGKGC-SAVVIDVGNIG  324 (352)
Q Consensus       277 ~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~i~v~gG~~-~~~~~d~~~~~  324 (352)
                      ..+..-..+.....    ...++.. .++++++.++.+ .+.+||.+...
T Consensus       253 ~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~  298 (337)
T 1gxr_A          253 VNKPDKYQLHLHES----CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             TTSSCEEEECCCSS----CEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             CCCCCeEEEcCCcc----ceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence            98876444322211    1112222 245555555544 46689987654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.48  E-value=0.03  Score=49.03  Aligned_cols=190  Identities=8%  Similarity=0.028  Sum_probs=91.3

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCe--eEecCCCC--CcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEE
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNT--WTDAAPMS--TARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKL  194 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~~--~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~  194 (352)
                      ++..++.||.+      ..+.+||..+..  ......+.  ..........-++.+ +.|+.+  ..+.+||..+.+-..
T Consensus       108 ~~~~l~s~~~d------~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l-~s~s~d--~~i~~wd~~~~~~~~  178 (340)
T 1got_B          108 SGNYVACGGLD------NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQI-VTSSGD--TTCALWDIETGQQTT  178 (340)
T ss_dssp             TSSEEEEEETT------CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEE-EEEETT--SCEEEEETTTTEEEE
T ss_pred             CCCEEEEEeCC------CeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcE-EEEECC--CcEEEEECCCCcEEE
Confidence            45566666643      457788877643  11111111  111111111225554 444444  678999998876433


Q ss_pred             ecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEE
Q 045821          195 HTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMM  274 (352)
Q Consensus       195 ~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~  274 (352)
                      .-..........+..-++++++.|+.++     .+..||..+..-...-...........+..++..++.|+.++ .+.+
T Consensus       179 ~~~~h~~~v~~~~~~~~~~~l~sg~~d~-----~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~-~v~i  252 (340)
T 1got_B          179 TFTGHTGDVMSLSLAPDTRLFVSGACDA-----SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA-TCRL  252 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTS-CEEE
T ss_pred             EEcCCCCceEEEEECCCCCEEEEEeCCC-----cEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC-cEEE
Confidence            2111111111111222677778776553     477888876643322110110000111223677777887766 8999


Q ss_pred             EeCCCCceEEccCCCCCcCCCCceEE-EeCCEEEEEcCCc-eEEEEEcCCcc
Q 045821          275 WQKESREWSPVGRLSTLLTRPPCKLV-AIGKTIFVIGKGC-SAVVIDVGNIG  324 (352)
Q Consensus       275 yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~i~v~gG~~-~~~~~d~~~~~  324 (352)
                      ||..+++-...-..+.. .....++. ..++++++.|+.+ .+.+||..+..
T Consensus       253 wd~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~  303 (340)
T 1got_B          253 FDLRADQELMTYSHDNI-ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD  303 (340)
T ss_dssp             EETTTTEEEEEECCTTC-CSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             EECCCCcEEEEEccCCc-ccceEEEEECCCCCEEEEECCCCeEEEEEcccCc
Confidence            99987653222111110 01111222 2356677777655 46689976543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.46  E-value=0.0075  Score=54.54  Aligned_cols=195  Identities=12%  Similarity=0.063  Sum_probs=97.9

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE--CCEEEEEeCCCCCCCCCCeEEEEECCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL--GKNAYLLGGCGWSEDATSEVYCYDASM  145 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t  145 (352)
                      ++.+++.++.+    -.+.++|.  .++......................+  ++.+++.++.      ...+.+||..+
T Consensus       133 ~~~~~~~~~~~----~~i~~~d~--~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~------d~~v~~~d~~~  200 (433)
T 3bws_A          133 NTRLAIPLLED----EGMDVLDI--NSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQ------ANAVHVFDLKT  200 (433)
T ss_dssp             SSEEEEEBTTS----SSEEEEET--TTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG------GTEEEEEETTT
T ss_pred             CCeEEEEeCCC----CeEEEEEC--CCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECC------CCEEEEEECCC
Confidence            56677665431    23566688  77765543322110011111222233  6778877753      35688999987


Q ss_pred             CeeE-ecCCCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEE-ECC-EEEEEccC
Q 045821          146 NTWT-DAAPMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFV-MDG-KIYIRCSA  220 (352)
Q Consensus       146 ~~W~-~~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~g-~iyv~GG~  220 (352)
                      ++.. .+.....  .-..++..  +..+|+.++.+  ..+.+||+.+.+....-..  ......++. -++ .|++. +.
T Consensus       201 ~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~--~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~-~~  273 (433)
T 3bws_A          201 LAYKATVDLTGK--WSKILLYDPIRDLVYCSNWIS--EDISVIDRKTKLEIRKTDK--IGLPRGLLLSKDGKELYIA-QF  273 (433)
T ss_dssp             CCEEEEEECSSS--SEEEEEEETTTTEEEEEETTT--TEEEEEETTTTEEEEECCC--CSEEEEEEECTTSSEEEEE-EE
T ss_pred             ceEEEEEcCCCC--CeeEEEEcCCCCEEEEEecCC--CcEEEEECCCCcEEEEecC--CCCceEEEEcCCCCEEEEE-EC
Confidence            6533 2221111  11122222  34677776544  6799999998865443222  111122222 255 45544 33


Q ss_pred             CCCC---CceEEEEEeCCCCceeecCCCCCCCCCCcEEEECC-EEEEEecCCCCeEEEEeCCCCceE
Q 045821          221 SAAT---SHVCALVYEPSTDSWLHADANMASGWRGPAVVVDD-ALYVLDQSSGTKLMMWQKESREWS  283 (352)
Q Consensus       221 ~~~~---~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~l~~~gg~~~~~v~~yd~~~~~W~  283 (352)
                      ....   ....+..||+.+.+-........ .....+..-++ .+|+.++..+ .+.+||..+++-.
T Consensus       274 ~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~-~v~v~d~~~~~~~  338 (433)
T 3bws_A          274 SASNQESGGGRLGIYSMDKEKLIDTIGPPG-NKRHIVSGNTENKIYVSDMCCS-KIEVYDLKEKKVQ  338 (433)
T ss_dssp             ESCTTCSCCEEEEEEETTTTEEEEEEEEEE-CEEEEEECSSTTEEEEEETTTT-EEEEEETTTTEEE
T ss_pred             CCCccccCCCeEEEEECCCCcEEeeccCCC-CcceEEECCCCCEEEEEecCCC-EEEEEECCCCcEE
Confidence            2111   12378899988775433311000 00111122234 6777766555 8999999876543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.46  E-value=0.02  Score=49.41  Aligned_cols=181  Identities=12%  Similarity=0.056  Sum_probs=90.4

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecC
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTE  197 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~  197 (352)
                      ++..++.|+.+      ..+.+||..+++....-....... .+++.. ++..++.++.+  ..+.+||..+.+-...-.
T Consensus       152 ~~~~l~~~~~d------g~v~~~d~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~d--g~i~~~d~~~~~~~~~~~  222 (337)
T 1gxr_A          152 DSKVCFSCCSD------GNIAVWDLHNQTLVRQFQGHTDGA-SCIDISNDGTKLWTGGLD--NTVRSWDLREGRQLQQHD  222 (337)
T ss_dssp             TSSEEEEEETT------SCEEEEETTTTEEEEEECCCSSCE-EEEEECTTSSEEEEEETT--SEEEEEETTTTEEEEEEE
T ss_pred             CCCEEEEEeCC------CcEEEEeCCCCceeeeeecccCce-EEEEECCCCCEEEEEecC--CcEEEEECCCCceEeeec
Confidence            45556666532      458889998876433211111111 112222 55566666654  678999998875333221


Q ss_pred             CCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeC
Q 045821          198 PNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQK  277 (352)
Q Consensus       198 ~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~  277 (352)
                      ... ........-+++++++|+..+     .+..||..+..-..+... ...........++++++.++.++ .+.+||.
T Consensus       223 ~~~-~v~~~~~s~~~~~l~~~~~~~-----~i~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg-~i~~~~~  294 (337)
T 1gxr_A          223 FTS-QIFSLGYCPTGEWLAVGMESS-----NVEVLHVNKPDKYQLHLH-ESCVLSLKFAYCGKWFVSTGKDN-LLNAWRT  294 (337)
T ss_dssp             CSS-CEEEEEECTTSSEEEEEETTS-----CEEEEETTSSCEEEECCC-SSCEEEEEECTTSSEEEEEETTS-EEEEEET
T ss_pred             CCC-ceEEEEECCCCCEEEEEcCCC-----cEEEEECCCCCeEEEcCC-ccceeEEEECCCCCEEEEecCCC-cEEEEEC
Confidence            111 111112223667777765442     478888877654333211 11101111223567777777665 8999999


Q ss_pred             CCCceEEccCCCCCcCCCCceEE-EeCCEEEEEcCCc-eEEEEEc
Q 045821          278 ESREWSPVGRLSTLLTRPPCKLV-AIGKTIFVIGKGC-SAVVIDV  320 (352)
Q Consensus       278 ~~~~W~~~~~~~~~~~~~~~~~~-~~~~~i~v~gG~~-~~~~~d~  320 (352)
                      .+++-.......    ....++. ..+++.++.|+.+ .+.+||+
T Consensus       295 ~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          295 PYGASIFQSKES----SSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TTCCEEEEEECS----SCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCCeEEEEecCC----CcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            887654322111    1111222 2345555555544 3556664

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.46  E-value=0.0082  Score=54.30  Aligned_cols=217  Identities=10%  Similarity=0.030  Sum_probs=112.4

Q ss_pred             eEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCC---Ccce
Q 045821           84 CCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMS---TARC  159 (352)
Q Consensus        84 ~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~---~~r~  159 (352)
                      .++.+|+  .+..+..+..++..   ....+++.. ++.+++.++.+      ..+.+||+.+++........   ....
T Consensus       102 ~l~~~d~--~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~------~~i~~~d~~~g~~~~~~~~~~~~~~~~  170 (433)
T 3bws_A          102 KLIALDK--EGITHRFISRFKTG---FQPKSVRFIDNTRLAIPLLED------EGMDVLDINSGQTVRLSPPEKYKKKLG  170 (433)
T ss_dssp             CEEECCB--TTCSEEEEEEEECS---SCBCCCEESSSSEEEEEBTTS------SSEEEEETTTCCEEEECCCHHHHTTCC
T ss_pred             EEEEECC--CCCcceEEEEEcCC---CCceEEEEeCCCeEEEEeCCC------CeEEEEECCCCeEeeecCcccccccCC
Confidence            6777888  77777666554321   111122222 67788776532      45899999988765433221   1111


Q ss_pred             eeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE-C-CEEEEEccCCCCCCceEEEEEeCC
Q 045821          160 YFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM-D-GKIYIRCSASAATSHVCALVYEPS  235 (352)
Q Consensus       160 ~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~-g~iyv~GG~~~~~~~~~i~~yd~~  235 (352)
                      ....+.+  ++.+++.++.+  ..+.+||..+.+....-.... ......+.. + ..+|+.++..     ..+..||+.
T Consensus       171 ~v~~~~~~~~~~~~~s~~~d--~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-----~~i~~~d~~  242 (433)
T 3bws_A          171 FVETISIPEHNELWVSQMQA--NAVHVFDLKTLAYKATVDLTG-KWSKILLYDPIRDLVYCSNWIS-----EDISVIDRK  242 (433)
T ss_dssp             EEEEEEEGGGTEEEEEEGGG--TEEEEEETTTCCEEEEEECSS-SSEEEEEEETTTTEEEEEETTT-----TEEEEEETT
T ss_pred             ceeEEEEcCCCEEEEEECCC--CEEEEEECCCceEEEEEcCCC-CCeeEEEEcCCCCEEEEEecCC-----CcEEEEECC
Confidence            1122223  67888888754  678999998865432211111 111122222 3 4577775333     268899998


Q ss_pred             CCceeecCCCCCCCCCCcEEE--ECCEEEEEecC-------CCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEE
Q 045821          236 TDSWLHADANMASGWRGPAVV--VDDALYVLDQS-------SGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTI  306 (352)
Q Consensus       236 ~~~W~~~~~~~~~~~~~~~~~--~~~~l~~~gg~-------~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i  306 (352)
                      +.+....-...   .....+.  .+++.+++++.       ....+.+||+.+++-...-..+.  .....++...++.+
T Consensus       243 ~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l  317 (433)
T 3bws_A          243 TKLEIRKTDKI---GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG--NKRHIVSGNTENKI  317 (433)
T ss_dssp             TTEEEEECCCC---SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE--CEEEEEECSSTTEE
T ss_pred             CCcEEEEecCC---CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC--CcceEEECCCCCEE
Confidence            77654332111   1111222  24544444442       12378999998876443321111  00111121224468


Q ss_pred             EEEcCCc-eEEEEEcCCcc
Q 045821          307 FVIGKGC-SAVVIDVGNIG  324 (352)
Q Consensus       307 ~v~gG~~-~~~~~d~~~~~  324 (352)
                      |+.++.+ .+.+||+++..
T Consensus       318 ~~~~~~~~~v~v~d~~~~~  336 (433)
T 3bws_A          318 YVSDMCCSKIEVYDLKEKK  336 (433)
T ss_dssp             EEEETTTTEEEEEETTTTE
T ss_pred             EEEecCCCEEEEEECCCCc
Confidence            8875444 56689987543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=97.45  E-value=0.019  Score=52.07  Aligned_cols=187  Identities=7%  Similarity=-0.008  Sum_probs=99.6

Q ss_pred             eeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-CCE-EEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCccee
Q 045821           83 VCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-GKN-AYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCY  160 (352)
Q Consensus        83 ~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~  160 (352)
                      ..++++|.  .++....+...+.     ...+.+.. +++ |++.+..++    ...++.+|..+++...+......  .
T Consensus       203 ~~i~~~d~--~tg~~~~l~~~~~-----~~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~~~~~~--~  269 (415)
T 2hqs_A          203 SALVIQTL--ANGAVRQVASFPR-----HNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGRSN--N  269 (415)
T ss_dssp             CEEEEEET--TTCCEEEEECCSS-----CEEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEECCCCSSC--E
T ss_pred             cEEEEEEC--CCCcEEEeecCCC-----cccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEEeCcCCCCc--c
Confidence            45677788  7777665554331     11122222 444 554544322    36799999998887666543321  1


Q ss_pred             eeeEEE-CCE-EEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCc
Q 045821          161 FPCGVL-NQK-IYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDS  238 (352)
Q Consensus       161 ~~~~~~-~~~-iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~  238 (352)
                      ...+.. +++ |++.+..+....++.+|..+..-+.+... .......+..-+|+..++++...  ....++.+|..+.+
T Consensus       270 ~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~-~~~~~~~~~spdG~~l~~~~~~~--g~~~i~~~d~~~~~  346 (415)
T 2hqs_A          270 TEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE-GSQNQDADVSSDGKFMVMVSSNG--GQQHIAKQDLATGG  346 (415)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCS-SSEEEEEEECTTSSEEEEEEECS--SCEEEEEEETTTCC
T ss_pred             cceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecC-CCcccCeEECCCCCEEEEEECcC--CceEEEEEECCCCC
Confidence            112222 454 44444322225788999988775554321 11111112223666555544331  23478999999988


Q ss_pred             eeecCCCCCCCCCCcEEEECCEEEEEecCCC--CeEEEEeCCCCceEEccC
Q 045821          239 WLHADANMASGWRGPAVVVDDALYVLDQSSG--TKLMMWQKESREWSPVGR  287 (352)
Q Consensus       239 W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~--~~v~~yd~~~~~W~~~~~  287 (352)
                      ...+....  .....+..-+++.+++++..+  ..++++|..++....+..
T Consensus       347 ~~~l~~~~--~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~  395 (415)
T 2hqs_A          347 VQVLSSTF--LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA  395 (415)
T ss_dssp             EEECCCSS--SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCC
T ss_pred             EEEecCCC--CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeC
Confidence            87764421  111122333666555555433  378999998877766643

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.42  E-value=0.017  Score=49.75  Aligned_cols=188  Identities=7%  Similarity=0.003  Sum_probs=91.0

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecC
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTE  197 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~  197 (352)
                      ++..++.|+.+      ..+.+||..+++....-....... ..++.. +++.++.|+.+  ..+.+||..+.+-...-.
T Consensus        34 ~~~~l~s~~~d------g~i~iw~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~s~~~d--~~i~vwd~~~~~~~~~~~  104 (312)
T 4ery_A           34 NGEWLASSSAD------KLIKIWGAYDGKFEKTISGHKLGI-SDVAWSSDSNLLVSASDD--KTLKIWDVSSGKCLKTLK  104 (312)
T ss_dssp             TSSEEEEEETT------SCEEEEETTTCCEEEEECCCSSCE-EEEEECTTSSEEEEEETT--SEEEEEETTTCCEEEEEE
T ss_pred             CCCEEEEeeCC------CeEEEEeCCCcccchhhccCCCce-EEEEEcCCCCEEEEECCC--CEEEEEECCCCcEEEEEc
Confidence            34455555533      346778887766543221111111 112222 56666777655  678999998876432211


Q ss_pred             CCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeC
Q 045821          198 PNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQK  277 (352)
Q Consensus       198 ~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~  277 (352)
                      ............-++.+++.|+.++     .+..||..+.+-...-..............++++++.|+.++ .+.+||.
T Consensus       105 ~~~~~v~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~wd~  178 (312)
T 4ery_A          105 GHSNYVFCCNFNPQSNLIVSGSFDE-----SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDT  178 (312)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTS-----CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS-CEEEEET
T ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-cEEEEEC
Confidence            1111111111222566777766553     478888877654322111111100111223667777787766 8999999


Q ss_pred             CCCceEEccCCCCCcCCCCceE-EEeCCEEEEEcCCc-eEEEEEcCCc
Q 045821          278 ESREWSPVGRLSTLLTRPPCKL-VAIGKTIFVIGKGC-SAVVIDVGNI  323 (352)
Q Consensus       278 ~~~~W~~~~~~~~~~~~~~~~~-~~~~~~i~v~gG~~-~~~~~d~~~~  323 (352)
                      .+++....-....  ......+ ...+++.++.|+.+ .+.+||..+.
T Consensus       179 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  224 (312)
T 4ery_A          179 ASGQCLKTLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG  224 (312)
T ss_dssp             TTCCEEEEECCSS--CCCEEEEEECTTSSEEEEEETTTEEEEEETTTT
T ss_pred             CCCceeeEEeccC--CCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            8766432211111  0111111 12244555555444 4557887654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.39  E-value=0.044  Score=49.81  Aligned_cols=188  Identities=13%  Similarity=0.125  Sum_probs=99.4

Q ss_pred             ECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEe-cCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEec
Q 045821          118 LGKNAYLLGGCGWSEDATSEVYCYDASMNTWTD-AAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHT  196 (352)
Q Consensus       118 ~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~-~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~  196 (352)
                      .++..++.|+.      ...+.+||..+++-.. +.....   ......+++..++.|+.+  ..+.+||..+.+-... 
T Consensus       207 ~~~~~l~s~s~------dg~i~~wd~~~~~~~~~~~~~~~---~v~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~-  274 (445)
T 2ovr_B          207 LHEKRVVSGSR------DATLRVWDIETGQCLHVLMGHVA---AVRCVQYDGRRVVSGAYD--FMVKVWDPETETCLHT-  274 (445)
T ss_dssp             EETTEEEEEET------TSEEEEEESSSCCEEEEEECCSS---CEEEEEECSSCEEEEETT--SCEEEEEGGGTEEEEE-
T ss_pred             ecCCEEEEEeC------CCEEEEEECCCCcEEEEEcCCcc---cEEEEEECCCEEEEEcCC--CEEEEEECCCCcEeEE-
Confidence            34444555553      3568889988765322 211111   112233377777777765  6788999887653222 


Q ss_pred             CCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEe
Q 045821          197 EPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQ  276 (352)
Q Consensus       197 ~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd  276 (352)
                       +........++.+++..++.|+.++     .+..||..+.+-...-.  ........+..++..++.|+.++ .+.+||
T Consensus       275 -~~~~~~~v~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~l~~~~~dg-~i~vwd  345 (445)
T 2ovr_B          275 -LQGHTNRVYSLQFDGIHVVSGSLDT-----SIRVWDVETGNCIHTLT--GHQSLTSGMELKDNILVSGNADS-TVKIWD  345 (445)
T ss_dssp             -ECCCSSCEEEEEECSSEEEEEETTS-----CEEEEETTTCCEEEEEC--CCCSCEEEEEEETTEEEEEETTS-CEEEEE
T ss_pred             -ecCCCCceEEEEECCCEEEEEeCCC-----eEEEEECCCCCEEEEEc--CCcccEEEEEEeCCEEEEEeCCC-eEEEEE
Confidence             2211222233444777777766553     48888987765332211  11111123344566677777666 899999


Q ss_pred             CCCCceEEccCCCCCcCCCCceEEEeCCEEEEEcCCc-eEEEEEcCCccccc
Q 045821          277 KESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGC-SAVVIDVGNIGNIG  327 (352)
Q Consensus       277 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~-~~~~~d~~~~~w~~  327 (352)
                      ..+++-...-..+........++ ..++..++.|+.+ .+.+||+++....+
T Consensus       346 ~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~l~s~~~dg~v~iwd~~~~~~~~  396 (445)
T 2ovr_B          346 IKTGQCLQTLQGPNKHQSAVTCL-QFNKNFVITSSDDGTVKLWDLKTGEFIR  396 (445)
T ss_dssp             TTTCCEEEEECSTTSCSSCEEEE-EECSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCCCcEEEEEccCCCCCCCEEEE-EECCCEEEEEeCCCeEEEEECCCCceee
Confidence            98765432211111111111223 3456666666655 46689988765433

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.39  E-value=0.037  Score=47.12  Aligned_cols=148  Identities=11%  Similarity=0.057  Sum_probs=73.9

Q ss_pred             CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceee-cCCC
Q 045821          167 NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLH-ADAN  245 (352)
Q Consensus       167 ~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~-~~~~  245 (352)
                      ++..++.++.+  ..+.+||..+. -..+...........+..-+++ ++.|+.++     .+..||..+.+-.. +.. 
T Consensus       154 ~~~~l~~~~~d--~~i~i~d~~~~-~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg-----~i~i~d~~~~~~~~~~~~-  223 (313)
T 3odt_A          154 SENKFLTASAD--KTIKLWQNDKV-IKTFSGIHNDVVRHLAVVDDGH-FISCSNDG-----LIKLVDMHTGDVLRTYEG-  223 (313)
T ss_dssp             TTTEEEEEETT--SCEEEEETTEE-EEEECSSCSSCEEEEEEEETTE-EEEEETTS-----EEEEEETTTCCEEEEEEC-
T ss_pred             CCCEEEEEECC--CCEEEEecCce-EEEEeccCcccEEEEEEcCCCe-EEEccCCC-----eEEEEECCchhhhhhhhc-
Confidence            55566666655  67888883322 2222211222222233444777 55555442     58888887654322 211 


Q ss_pred             CCCCCCCcEEE--ECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEE-EeCCEEEEEcCCceEEEEEcCC
Q 045821          246 MASGWRGPAVV--VDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLV-AIGKTIFVIGKGCSAVVIDVGN  322 (352)
Q Consensus       246 ~~~~~~~~~~~--~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~i~v~gG~~~~~~~d~~~  322 (352)
                      ..  .....+.  .++. ++.|+.++ .+.+||..+.+....-..+.   ....++. ..++++++.+....+.+||+++
T Consensus       224 ~~--~~i~~~~~~~~~~-l~~~~~dg-~v~iwd~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~  296 (313)
T 3odt_A          224 HE--SFVYCIKLLPNGD-IVSCGEDR-TVRIWSKENGSLKQVITLPA---ISIWSVDCMSNGDIIVGSSDNLVRIFSQEK  296 (313)
T ss_dssp             CS--SCEEEEEECTTSC-EEEEETTS-EEEEECTTTCCEEEEEECSS---SCEEEEEECTTSCEEEEETTSCEEEEESCG
T ss_pred             CC--ceEEEEEEecCCC-EEEEecCC-EEEEEECCCCceeEEEeccC---ceEEEEEEccCCCEEEEeCCCcEEEEeCCC
Confidence            11  1111122  2454 55566555 89999998876544322221   1112222 2355655434344577899999


Q ss_pred             cccccceEE
Q 045821          323 IGNIGGIMV  331 (352)
Q Consensus       323 ~~w~~~~~~  331 (352)
                      ..+.....+
T Consensus       297 ~~~~~~~~~  305 (313)
T 3odt_A          297 SRWASEDEI  305 (313)
T ss_dssp             GGCCC----
T ss_pred             Cceeehhhh
Confidence            887664443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.38  E-value=0.013  Score=57.84  Aligned_cols=214  Identities=6%  Similarity=-0.032  Sum_probs=117.3

Q ss_pred             eEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCC---Cc-c
Q 045821           84 CCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMS---TA-R  158 (352)
Q Consensus        84 ~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~---~~-r  158 (352)
                      -++.||+  .++.++.+.....  ....-.++..- ++.|++...        ..+++||+.+++|.......   .+ .
T Consensus       428 Gl~~~~~--~~~~~~~~~~~~~--~~~~v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~~~~~~~~~~~~  495 (781)
T 3v9f_A          428 NISYYNT--RLKKFQIIELEKN--ELLDVRVFYEDKNKKIWIGTH--------AGVFVIDLASKKVIHHYDTSNSQLLEN  495 (781)
T ss_dssp             EEEEECS--SSCEEEECCSTTT--CCCCEEEEEECTTSEEEEEET--------TEEEEEESSSSSCCEEECTTTSSCSCS
T ss_pred             CEEEEcC--CCCcEEEeccCCC--CCCeEEEEEECCCCCEEEEEC--------CceEEEeCCCCeEEecccCcccccccc
Confidence            3566787  7777776653210  11111222222 467776431        45899999998887654322   11 1


Q ss_pred             eeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccc--eeEEE-ECCEEEEEccCCCCCCceEE-EEEe
Q 045821          159 CYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEI--EDSFV-MDGKIYIRCSASAATSHVCA-LVYE  233 (352)
Q Consensus       159 ~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~--~~~~~-~~g~iyv~GG~~~~~~~~~i-~~yd  233 (352)
                      .-.+++.- ++.|++....   ..+.+||+.+++++...........  .+.+. .+|+|++... .      .+ .+||
T Consensus       496 ~i~~i~~d~~g~lWigt~~---~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~------Glv~~~d  565 (781)
T 3v9f_A          496 FVRSIAQDSEGRFWIGTFG---GGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-E------GLVCFPS  565 (781)
T ss_dssp             CEEEEEECTTCCEEEEESS---SCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-T------EEEEESC
T ss_pred             eeEEEEEcCCCCEEEEEcC---CCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-C------CceEEEC
Confidence            11122222 4677775421   3588999999998887532111111  11222 2678888632 2      36 8999


Q ss_pred             CCCCceeecCCC--CCCCCCCcEEE-ECCEEEEEecCCCCeEEEEeCCCCceEEcc---CCCCCcCCCCceEEEe-CCEE
Q 045821          234 PSTDSWLHADAN--MASGWRGPAVV-VDDALYVLDQSSGTKLMMWQKESREWSPVG---RLSTLLTRPPCKLVAI-GKTI  306 (352)
Q Consensus       234 ~~~~~W~~~~~~--~~~~~~~~~~~-~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~---~~~~~~~~~~~~~~~~-~~~i  306 (352)
                      +.++++......  .+.......+. .+|.|++.+. .  .+.+||++++++....   .++...... .+++.. ++.|
T Consensus       566 ~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~-~--Gl~~~~~~~~~~~~~~~~dGl~~~~f~~-~~~~~~~~G~l  641 (781)
T 3v9f_A          566 ARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWASTN-T--GISCYITSKKCFYTYDHSNNIPQGSFIS-GCVTKDHNGLI  641 (781)
T ss_dssp             TTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEECS-S--CEEEEETTTTEEEEECGGGTCCSSCEEE-EEEEECTTSCE
T ss_pred             CCCCcEEEccccCCCCCceEEEEEECCCCCEEEEcC-C--ceEEEECCCCceEEecccCCcccccccc-CceEECCCCEE
Confidence            999888766431  11111122222 2567776643 3  5999999999987764   233211111 133333 4554


Q ss_pred             EEEcCCceEEEEEcCCcc
Q 045821          307 FVIGKGCSAVVIDVGNIG  324 (352)
Q Consensus       307 ~v~gG~~~~~~~d~~~~~  324 (352)
                       .||+......||++...
T Consensus       642 -~~g~~~Gl~~f~p~~~~  658 (781)
T 3v9f_A          642 -YFGSINGLCFFNPDIAI  658 (781)
T ss_dssp             -EEEETTEEEEECSCCGG
T ss_pred             -EEECCCceEEEChhhcc
Confidence             45777788889987643

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.36  E-value=0.029  Score=48.55  Aligned_cols=247  Identities=13%  Similarity=0.040  Sum_probs=119.8

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCe--eEeccCCCcccCCcceEEEEE--CCEEEEEeCCCCCCCCCCeEEEEEC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSW--KMIHELPARTLRRKGMGFEVL--GKNAYLLGGCGWSEDATSEVYCYDA  143 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w--~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~  143 (352)
                      +..+|+.+..    ...++.+|+  .+...  ..+....   .+.  ++++..  +..+| .+...   .....+.+||.
T Consensus        51 g~~l~~~~~~----~~~i~~~d~--~~~~~~~~~~~~~~---~~~--~~~~~s~dg~~l~-~~~~~---~~~~~i~v~d~  115 (331)
T 3u4y_A           51 CSNVVVTSDF----CQTLVQIET--QLEPPKVVAIQEGQ---SSM--ADVDITPDDQFAV-TVTGL---NHPFNMQSYSF  115 (331)
T ss_dssp             SCEEEEEEST----TCEEEEEEC--SSSSCEEEEEEECS---SCC--CCEEECTTSSEEE-ECCCS---SSSCEEEEEET
T ss_pred             CCEEEEEeCC----CCeEEEEEC--CCCceeEEecccCC---CCc--cceEECCCCCEEE-EecCC---CCcccEEEEEC
Confidence            4557766542    226777888  77664  2222221   111  212222  34566 33211   11238999999


Q ss_pred             CCCeeEecCCCCCcceeeeeEEE-CC-EEEEEeCCCCCCc-eEEEeCCCCc-EEEe--cCCCCcccceeEEE-ECCE-EE
Q 045821          144 SMNTWTDAAPMSTARCYFPCGVL-NQ-KIYCIGGLGDTHS-WDVYDPRTNN-WKLH--TEPNIFTEIEDSFV-MDGK-IY  215 (352)
Q Consensus       144 ~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~gG~~~~~~-v~~yd~~t~~-W~~~--~~~~~~~~~~~~~~-~~g~-iy  215 (352)
                      .+++....-..  ....+.++.. ++ .+|+.+...  .. +.+|+...+. -...  ...+........+. -+|+ +|
T Consensus       116 ~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~~--~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~  191 (331)
T 3u4y_A          116 LKNKFISTIPI--PYDAVGIAISPNGNGLILIDRSS--ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAF  191 (331)
T ss_dssp             TTTEEEEEEEC--CTTEEEEEECTTSSCEEEEEETT--TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEE
T ss_pred             CCCCeEEEEEC--CCCccceEECCCCCEEEEEecCC--CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEE
Confidence            98875433211  1112333333 44 577776543  44 7777765432 1111  00111111112222 2554 78


Q ss_pred             EEccCCCCCCceEEEEEeCCCCce----eecCCCCCCCCCCcEEEECCE-EEEEecCCCCeEEEEeCCCCceEEccCCCC
Q 045821          216 IRCSASAATSHVCALVYEPSTDSW----LHADANMASGWRGPAVVVDDA-LYVLDQSSGTKLMMWQKESREWSPVGRLST  290 (352)
Q Consensus       216 v~GG~~~~~~~~~i~~yd~~~~~W----~~~~~~~~~~~~~~~~~~~~~-l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~  290 (352)
                      +.+...     ..+..||+.+.+.    ..++..  ..-...++.-+++ ||+..... ..+.+||+++++...+...+.
T Consensus       192 v~~~~~-----~~v~v~d~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~-~~i~~~d~~~~~~~~~~~~~~  263 (331)
T 3u4y_A          192 VANLIG-----NSIGILETQNPENITLLNAVGTN--NLPGTIVVSRDGSTVYVLTEST-VDVFNFNQLSGTLSFVKSFGH  263 (331)
T ss_dssp             EEETTT-----TEEEEEECSSTTSCEEEEEEECS--SCCCCEEECTTSSEEEEECSSE-EEEEEEETTTTEEEEEEEEEC
T ss_pred             EEeCCC-----CeEEEEECCCCcccceeeeccCC--CCCceEEECCCCCEEEEEEcCC-CEEEEEECCCCceeeeccccc
Confidence            875322     3688899887664    222211  1111222333555 66554432 379999999988755543222


Q ss_pred             Cc---CCCC-----ceEEEeCCEEEEEcCCc-eEEEEEcCCcccccceEEeccCCCCCCCCcceeeE
Q 045821          291 LL---TRPP-----CKLVAIGKTIFVIGKGC-SAVVIDVGNIGNIGGIMVSSSIPKLNDNDDIISCK  348 (352)
Q Consensus       291 ~~---~~~~-----~~~~~~~~~i~v~gG~~-~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  348 (352)
                      ..   ....     .++..-+..||+.+... .+.+||+....       ...+.++..+..++.|+
T Consensus       264 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~-------~~~~~~~~~~g~~~~~~  323 (331)
T 3u4y_A          264 GLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV-------VGYVAGIEANGGIAICH  323 (331)
T ss_dssp             CCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE-------EEECTTCCCBSCEEECC
T ss_pred             ccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc-------ccceecccccCCeEEEC
Confidence            10   0111     12223345677776544 57789987633       12244555566666654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=97.35  E-value=0.029  Score=49.41  Aligned_cols=237  Identities=9%  Similarity=0.085  Sum_probs=108.2

Q ss_pred             CCEEEEEEecC-CCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCC
Q 045821           68 ETWIYAFCRDN-KLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMN  146 (352)
Q Consensus        68 ~~~l~~~gg~~-~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~  146 (352)
                      +..||+....+ ..+....|.+|+  .++....+...+.  .......++.-++.+|+...      ....+.+|+..++
T Consensus        61 g~~l~~~~~~~~~~~~v~~~~~~~--~~g~~~~~~~~~~--~~~~p~~~~~dg~~l~~~~~------~~~~v~~~~~~~~  130 (361)
T 3scy_A           61 GKFVYSVNEFSKDQAAVSAFAFDK--EKGTLHLLNTQKT--MGADPCYLTTNGKNIVTANY------SGGSITVFPIGQD  130 (361)
T ss_dssp             SSEEEEEECCSSTTCEEEEEEEET--TTTEEEEEEEEEC--SSSCEEEEEECSSEEEEEET------TTTEEEEEEBCTT
T ss_pred             CCEEEEEEccCCCCCcEEEEEEeC--CCCcEEEeeEecc--CCCCcEEEEECCCEEEEEEC------CCCEEEEEEeCCC
Confidence            45677665431 234566777787  7777776655431  11112223333445666542      2356788887643


Q ss_pred             e-eEecCC-------CCCc-c----eeeeeEEE-CC-EEEEEeCCCCCCceEEEeCCCCc-------EEEe-----cCCC
Q 045821          147 T-WTDAAP-------MSTA-R----CYFPCGVL-NQ-KIYCIGGLGDTHSWDVYDPRTNN-------WKLH-----TEPN  199 (352)
Q Consensus       147 ~-W~~~~~-------~~~~-r----~~~~~~~~-~~-~iyv~gG~~~~~~v~~yd~~t~~-------W~~~-----~~~~  199 (352)
                      . ...+..       -+.+ |    ..+.++.. ++ .+|+.+...  ..+.+|+.....       ....     ...+
T Consensus       131 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~--~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~  208 (361)
T 3scy_A          131 GALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGT--DQIHKFNINPNANADNKEKFLTKGTPEAFKVA  208 (361)
T ss_dssp             SCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTT--TEEEEEEECTTCCTTTCCCCEEEEEEEEEECC
T ss_pred             CcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCC--CEEEEEEEcCCCCcccccceeecccccceecC
Confidence            2 111110       0110 0    11223332 45 577765322  567777665443       2111     0111


Q ss_pred             CcccceeEEE-ECC-EEEEEccCCCCCCceEEEEEeCCCCceeecCC---CCCCCCCCcEEE--ECCE-EEEEecCCCCe
Q 045821          200 IFTEIEDSFV-MDG-KIYIRCSASAATSHVCALVYEPSTDSWLHADA---NMASGWRGPAVV--VDDA-LYVLDQSSGTK  271 (352)
Q Consensus       200 ~~~~~~~~~~-~~g-~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~---~~~~~~~~~~~~--~~~~-l~~~gg~~~~~  271 (352)
                      ......+.+. -+| .+|+.+...     ..+..||..+++...+..   ..........+.  -+++ ||+.+......
T Consensus       209 ~~~~~~~~~~spdg~~l~v~~~~~-----~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~  283 (361)
T 3scy_A          209 PGSGPRHLIFNSDGKFAYLINEIG-----GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADG  283 (361)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTT-----CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCE
T ss_pred             CCCCCeEEEEcCCCCEEEEEcCCC-----CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCE
Confidence            1111112222 355 477764222     257777777776654422   111111111222  3555 55544331337


Q ss_pred             EEEEeC--CCCceEEccCCCCCcCCCCceEEEeCCEEEEEc-CCceEEEEEcC
Q 045821          272 LMMWQK--ESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIG-KGCSAVVIDVG  321 (352)
Q Consensus       272 v~~yd~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~g-G~~~~~~~d~~  321 (352)
                      +.+|+.  .++++..+...+....-...++..-+..||+.+ ....+.+|++.
T Consensus       284 i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          284 VAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             EEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence            777766  467777666544311111122222234577766 34456675554

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.34  E-value=0.027  Score=50.56  Aligned_cols=193  Identities=9%  Similarity=0.054  Sum_probs=94.2

Q ss_pred             EEECCEEEEEeCCCCCCCCCCeEEEEECCCCe--eEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcE
Q 045821          116 EVLGKNAYLLGGCGWSEDATSEVYCYDASMNT--WTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNW  192 (352)
Q Consensus       116 ~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W  192 (352)
                      ...++.+++.|+.      ...+.+||..+..  -..+.....+  -.+++.. ++..++.|+.+  ..+.+||..+..-
T Consensus       182 ~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~s~~~d--~~v~iwd~~~~~~  251 (401)
T 4aez_A          182 LSWNRHVLSSGSR------SGAIHHHDVRIANHQIGTLQGHSSE--VCGLAWRSDGLQLASGGND--NVVQIWDARSSIP  251 (401)
T ss_dssp             EEEETTEEEEEET------TSEEEEEETTSSSCEEEEEECCSSC--EEEEEECTTSSEEEEEETT--SCEEEEETTCSSE
T ss_pred             EEECCCEEEEEcC------CCCEEEEecccCcceeeEEcCCCCC--eeEEEEcCCCCEEEEEeCC--CeEEEccCCCCCc
Confidence            3335556666653      3567888887432  1122111111  1111222 56677777765  6789999987653


Q ss_pred             EEecCCCCcccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEE--ECCE-EEEEecC
Q 045821          193 KLHTEPNIFTEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVV--VDDA-LYVLDQS  267 (352)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~--~~~~-l~~~gg~  267 (352)
                      ...-... ..........  +..+++.|+..   ....+..||..+.+-...-.   .......+.  -+++ ++..+|.
T Consensus       252 ~~~~~~~-~~~v~~~~~~p~~~~ll~~~~gs---~d~~i~i~d~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~g~  324 (401)
T 4aez_A          252 KFTKTNH-NAAVKAVAWCPWQSNLLATGGGT---MDKQIHFWNAATGARVNTVD---AGSQVTSLIWSPHSKEIMSTHGF  324 (401)
T ss_dssp             EEEECCC-SSCCCEEEECTTSTTEEEEECCT---TTCEEEEEETTTCCEEEEEE---CSSCEEEEEECSSSSEEEEEECT
T ss_pred             cEEecCC-cceEEEEEECCCCCCEEEEecCC---CCCEEEEEECCCCCEEEEEe---CCCcEEEEEECCCCCeEEEEeec
Confidence            3221111 1111122222  34677775421   11258888887765432211   011111122  2444 4444454


Q ss_pred             CCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEcCCce-EEEEEcCCccc
Q 045821          268 SGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCS-AVVIDVGNIGN  325 (352)
Q Consensus       268 ~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~-~~~~d~~~~~w  325 (352)
                      ....+.+||..+.....+..++.............+++.++.|+.+. +.+||+....-
T Consensus       325 ~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~  383 (401)
T 4aez_A          325 PDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDH  383 (401)
T ss_dssp             TTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC---
T ss_pred             CCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence            44499999998887776654332111212222233566666666554 55899876553

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.33  E-value=0.035  Score=54.85  Aligned_cols=212  Identities=7%  Similarity=0.049  Sum_probs=115.6

Q ss_pred             EEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCC----Ccce
Q 045821           85 CYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMS----TARC  159 (352)
Q Consensus        85 ~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~----~~r~  159 (352)
                      ++.||+  .++.+..+...........-.++..- ++.|++...        ..+++||+.+++|..+....    .+..
T Consensus       429 l~~~d~--~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~  498 (795)
T 4a2l_A          429 LSILHR--NSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL--------SALVRFNPEQRSFTTIEKEKDGTPVVSK  498 (795)
T ss_dssp             EEEEET--TTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES--------SCEEEEETTTTEEEECCBCTTCCBCCCC
T ss_pred             eeEEeC--CCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec--------CceeEEeCCCCeEEEccccccccccCCc
Confidence            566777  77777666532110011111222222 456766432        34799999999998775331    1111


Q ss_pred             e-eeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecC---CCCccc-ceeEEE--ECCEEEEEccCCCCCCceEEEE
Q 045821          160 Y-FPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTE---PNIFTE-IEDSFV--MDGKIYIRCSASAATSHVCALV  231 (352)
Q Consensus       160 ~-~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~---~~~~~~-~~~~~~--~~g~iyv~GG~~~~~~~~~i~~  231 (352)
                      . .+...- ++.+++...    ..+.+||+.++.+ ....   ...... ...+..  .+|+|++... .      .+.+
T Consensus       499 ~i~~i~~d~~g~lWigt~----~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~------Gl~~  566 (795)
T 4a2l_A          499 QITTLFRDSHKRLWIGGE----EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E------GFYC  566 (795)
T ss_dssp             CEEEEEECTTCCEEEEES----SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S------CEEE
T ss_pred             eEEEEEECCCCCEEEEeC----CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C------Ccee
Confidence            1 122222 567887654    4588999999888 4431   111111 111222  2678888532 1      3889


Q ss_pred             EeCCCCceeecCCC--CCCCCCCcEEEE--CCEEEEEecCCCCeEEEEeCCCCceEEcc---CCCCCcCCCCceEEEe-C
Q 045821          232 YEPSTDSWLHADAN--MASGWRGPAVVV--DDALYVLDQSSGTKLMMWQKESREWSPVG---RLSTLLTRPPCKLVAI-G  303 (352)
Q Consensus       232 yd~~~~~W~~~~~~--~~~~~~~~~~~~--~~~l~~~gg~~~~~v~~yd~~~~~W~~~~---~~~~~~~~~~~~~~~~-~  303 (352)
                      ||+.++++......  .+... ..++..  +|.|++.+..   .+.+||++++++....   .++..... ..+++.. +
T Consensus       567 ~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lWi~t~~---Gl~~~~~~~~~~~~~~~~dGl~~~~f~-~~~~~~~~~  641 (795)
T 4a2l_A          567 FNEKDKQIKRYNTTNGLPNNV-VYGILEDSFGRLWLSTNR---GISCFNPETEKFRNFTESDGLQSNQFN-TASYCRTSV  641 (795)
T ss_dssp             EETTTTEEEEECGGGTCSCSC-EEEEEECTTSCEEEEETT---EEEEEETTTTEEEEECGGGTCSCSCEE-EEEEEECTT
T ss_pred             ECCCCCcEEEeCCCCCCchhh-eEEEEECCCCCEEEEcCC---ceEEEcCCCCcEEEcCCcCCCccccCc-cCceeECCC
Confidence            99999988876431  11111 112222  5677776632   7999999999988664   23321111 1233333 4


Q ss_pred             CEEEEEcCCceEEEEEcCCcc
Q 045821          304 KTIFVIGKGCSAVVIDVGNIG  324 (352)
Q Consensus       304 ~~i~v~gG~~~~~~~d~~~~~  324 (352)
                      +.|| +|+......|+++...
T Consensus       642 G~l~-~g~~~Gl~~~~p~~~~  661 (795)
T 4a2l_A          642 GQMY-FGGINGITTFRPELLL  661 (795)
T ss_dssp             SCEE-EEETTEEEEECGGGCC
T ss_pred             CeEE-EecCCceEEEcHHHcc
Confidence            5544 5667788889987644

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.32  E-value=0.0074  Score=53.17  Aligned_cols=191  Identities=7%  Similarity=-0.007  Sum_probs=98.7

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE--C--CEEEEEeCCCCCCceEEEeCCCCcEEE
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL--N--QKIYCIGGLGDTHSWDVYDPRTNNWKL  194 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~--~--~~iyv~gG~~~~~~v~~yd~~t~~W~~  194 (352)
                      ++..++.|+.+      ..+.+||....++..+..+......-....+  +  +.+++.|+.+  ..+.+||..+++|..
T Consensus        22 ~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d--g~v~iwd~~~~~~~~   93 (379)
T 3jrp_A           22 YGKRLATCSSD------KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD--GKVLIWKEENGRWSQ   93 (379)
T ss_dssp             SSSEEEEEETT------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT--SCEEEEEEETTEEEE
T ss_pred             CCCEEEEEECC------CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC--CEEEEEEcCCCceeE
Confidence            34555556532      3477788776666554433321111122222  2  5666667655  678999999998776


Q ss_pred             ecCCCCcccceeEEEE--C--CEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEE-------------
Q 045821          195 HTEPNIFTEIEDSFVM--D--GKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVV-------------  257 (352)
Q Consensus       195 ~~~~~~~~~~~~~~~~--~--g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~-------------  257 (352)
                      +............+.+  +  +.+++.|+.++     .+..||..+..-...............+..             
T Consensus        94 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  168 (379)
T 3jrp_A           94 IAVHAVHSASVNSVQWAPHEYGPLLLVASSDG-----KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG  168 (379)
T ss_dssp             EEEECCCSSCEEEEEECCGGGCSEEEEEETTS-----EEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---------
T ss_pred             eeeecCCCcceEEEEeCCCCCCCEEEEecCCC-----cEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccC
Confidence            6543322222222222  3  56667665543     577888766532111000000100111111             


Q ss_pred             --CCEEEEEecCCCCeEEEEeCCCCc--eEEccCCCCCcCCCCceEEE-eC---CEEEEEcCCce-EEEEEcCCcc
Q 045821          258 --DDALYVLDQSSGTKLMMWQKESRE--WSPVGRLSTLLTRPPCKLVA-IG---KTIFVIGKGCS-AVVIDVGNIG  324 (352)
Q Consensus       258 --~~~l~~~gg~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~-~~---~~i~v~gG~~~-~~~~d~~~~~  324 (352)
                        ++.+++.|+.++ .+.+||..++.  +..+..+... .....++.. .+   +.+++.|+.+. +.+||+....
T Consensus       169 ~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          169 TKESRKFVTGGADN-LVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  242 (379)
T ss_dssp             -CTTCEEEEEETTS-CEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             CCCCCEEEEEeCCC-eEEEEEecCCCcceeeEEEEecc-cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence              467777887766 88999886543  5444333221 111122222 23   67777776554 6689988754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.32  E-value=0.014  Score=50.68  Aligned_cols=232  Identities=8%  Similarity=-0.018  Sum_probs=111.3

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEE-ECC-EEEEEeCCCCCCCCCCeEEEEECCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEV-LGK-NAYLLGGCGWSEDATSEVYCYDASM  145 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~~d~~t  145 (352)
                      .+.+|+....    .-.+.++|+  .++........+.   ...  .++. .++ .+|+.+..      ...++++|+.+
T Consensus         9 ~~~~~v~~~~----~~~v~~~d~--~~~~~~~~~~~~~---~~~--~~~~s~dg~~l~~~~~~------~~~i~~~d~~~   71 (331)
T 3u4y_A            9 SNFGIVVEQH----LRRISFFST--DTLEILNQITLGY---DFV--DTAITSDCSNVVVTSDF------CQTLVQIETQL   71 (331)
T ss_dssp             CCEEEEEEGG----GTEEEEEET--TTCCEEEEEECCC---CEE--EEEECSSSCEEEEEEST------TCEEEEEECSS
T ss_pred             CCEEEEEecC----CCeEEEEeC--cccceeeeEEccC---Ccc--eEEEcCCCCEEEEEeCC------CCeEEEEECCC
Confidence            5678877543    235667798  8887765544431   111  2222 244 57777642      34789999988


Q ss_pred             Cee--EecCCCCCcceeeeeEEE-C-CEEEEEeCCCC-CCceEEEeCCCCcEEEecCCCCcccceeEEE-ECC-EEEEEc
Q 045821          146 NTW--TDAAPMSTARCYFPCGVL-N-QKIYCIGGLGD-THSWDVYDPRTNNWKLHTEPNIFTEIEDSFV-MDG-KIYIRC  218 (352)
Q Consensus       146 ~~W--~~~~~~~~~r~~~~~~~~-~-~~iyv~gG~~~-~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~g-~iyv~G  218 (352)
                      ++.  ..+.....+.  ++++.. + ..+| .+.... ...+.+||..+++-...-+.  .......+. -+| .+|+.+
T Consensus        72 ~~~~~~~~~~~~~~~--~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~  146 (331)
T 3u4y_A           72 EPPKVVAIQEGQSSM--ADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPI--PYDAVGIAISPNGNGLILID  146 (331)
T ss_dssp             SSCEEEEEEECSSCC--CCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEEC--CTTEEEEEECTTSSCEEEEE
T ss_pred             CceeEEecccCCCCc--cceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEEC--CCCccceEECCCCCEEEEEe
Confidence            764  2222111221  212222 3 4566 332221 13899999998875443212  111122222 255 478774


Q ss_pred             cCCCCCCceEEEEEeCCCC-ceeec-CCCCCCCCCCcE--EEECCE-EEEEecCCCCeEEEEeCCCCce-EEccCCCCCc
Q 045821          219 SASAATSHVCALVYEPSTD-SWLHA-DANMASGWRGPA--VVVDDA-LYVLDQSSGTKLMMWQKESREW-SPVGRLSTLL  292 (352)
Q Consensus       219 G~~~~~~~~~i~~yd~~~~-~W~~~-~~~~~~~~~~~~--~~~~~~-l~~~gg~~~~~v~~yd~~~~~W-~~~~~~~~~~  292 (352)
                      ....   . .+..|+...+ .-... ............  +.-+++ +|+.+...+ .+.+||+.+.+. ..+..++...
T Consensus       147 ~~~~---~-~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~-~v~v~d~~~~~~~~~~~~~~~~~  221 (331)
T 3u4y_A          147 RSSA---N-TVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGN-SIGILETQNPENITLLNAVGTNN  221 (331)
T ss_dssp             ETTT---T-EEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTT-EEEEEECSSTTSCEEEEEEECSS
T ss_pred             cCCC---c-eEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCC-eEEEEECCCCcccceeeeccCCC
Confidence            3321   1 1445554322 11111 000011111112  223554 666654443 899999987765 1122222211


Q ss_pred             CCCCceEEEeCCEEEEEcCC-ceEEEEEcCCcccc
Q 045821          293 TRPPCKLVAIGKTIFVIGKG-CSAVVIDVGNIGNI  326 (352)
Q Consensus       293 ~~~~~~~~~~~~~i~v~gG~-~~~~~~d~~~~~w~  326 (352)
                      .-...++..-+..+|+.... ..+.++|+++....
T Consensus       222 ~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~  256 (331)
T 3u4y_A          222 LPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLS  256 (331)
T ss_dssp             CCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEE
T ss_pred             CCceEEECCCCCEEEEEEcCCCEEEEEECCCCcee
Confidence            11112222224457777643 34668998876653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=97.32  E-value=0.034  Score=50.37  Aligned_cols=222  Identities=9%  Similarity=-0.053  Sum_probs=110.6

Q ss_pred             eeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeee
Q 045821           83 VCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFP  162 (352)
Q Consensus        83 ~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~  162 (352)
                      ..++++|.  ....-..+.....    .........+++.+++++.+.   ....++++|..+++...+...+..  ..+
T Consensus       159 ~~i~i~d~--~g~~~~~l~~~~~----~v~~~~~Spdg~~la~~s~~~---~~~~i~~~d~~tg~~~~l~~~~~~--~~~  227 (415)
T 2hqs_A          159 YELRVSDY--DGYNQFVVHRSPQ----PLMSPAWSPDGSKLAYVTFES---GRSALVIQTLANGAVRQVASFPRH--NGA  227 (415)
T ss_dssp             EEEEEEET--TSCSCEEEEEESS----CEEEEEECTTSSEEEEEECTT---SSCEEEEEETTTCCEEEEECCSSC--EEE
T ss_pred             ceEEEEcC--CCCCCEEEeCCCC----cceeeEEcCCCCEEEEEEecC---CCcEEEEEECCCCcEEEeecCCCc--ccC
Confidence            46777787  6555444443221    111111222455445544322   236899999999887665543321  112


Q ss_pred             eEEE-CC-EEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCcee
Q 045821          163 CGVL-NQ-KIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWL  240 (352)
Q Consensus       163 ~~~~-~~-~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~  240 (352)
                      .+.. ++ .|++.+..+....++.+|..+.+.+.+..... .....+..-+|+..++++..  .....++.+|..+.+-.
T Consensus       228 ~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~-~~~~~~~spdg~~l~~~s~~--~g~~~i~~~d~~~~~~~  304 (415)
T 2hqs_A          228 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS-NNTEPTWFPDSQNLAFTSDQ--AGRPQVYKVNINGGAPQ  304 (415)
T ss_dssp             EEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSS-CEEEEEECTTSSEEEEEECT--TSSCEEEEEETTSSCCE
T ss_pred             EEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCC-cccceEECCCCCEEEEEECC--CCCcEEEEEECCCCCEE
Confidence            2222 45 45555544333679999999988766543221 11111222266644443322  12346889999887655


Q ss_pred             ecCCCCCCCCCCcEEEECCEEEEEecCC-C-CeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEcCCc----e
Q 045821          241 HADANMASGWRGPAVVVDDALYVLDQSS-G-TKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGC----S  314 (352)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~l~~~gg~~-~-~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~----~  314 (352)
                      .+.... .........-+++.+++++.. + ..++++|..+++...+....    .........+++.+++++..    .
T Consensus       305 ~l~~~~-~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~----~~~~~~~spdg~~l~~~s~~~~~~~  379 (415)
T 2hqs_A          305 RITWEG-SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF----LDETPSLAPNGTMVIYSSSQGMGSV  379 (415)
T ss_dssp             ECCCSS-SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS----SCEEEEECTTSSEEEEEEEETTEEE
T ss_pred             EEecCC-CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC----CcCCeEEcCCCCEEEEEEcCCCccE
Confidence            543211 000011122355544444332 2 47999999998886654321    11111222355544444322    4


Q ss_pred             EEEEEcCCc
Q 045821          315 AVVIDVGNI  323 (352)
Q Consensus       315 ~~~~d~~~~  323 (352)
                      .+++|+...
T Consensus       380 l~~~d~~g~  388 (415)
T 2hqs_A          380 LNLVSTDGR  388 (415)
T ss_dssp             EEEEETTSC
T ss_pred             EEEEECCCC
Confidence            667887643

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.30  E-value=0.0026  Score=56.11  Aligned_cols=146  Identities=11%  Similarity=0.071  Sum_probs=75.7

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCccee-eeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEec
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCY-FPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHT  196 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~-~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~  196 (352)
                      ++.+++.|+.      ...+.+||..++++..+..+...... .+++.. ++..++.|+.+  ..+.+||..+.++....
T Consensus        19 ~~~~l~~~~~------d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~   90 (372)
T 1k8k_C           19 DRTQIAICPN------NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD--RNAYVWTLKGRTWKPTL   90 (372)
T ss_dssp             TSSEEEEECS------SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT--SCEEEEEEETTEEEEEE
T ss_pred             CCCEEEEEeC------CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC--CeEEEEECCCCeeeeeE
Confidence            4556666653      35688999988876555443321111 122222 56666666654  67899999888876543


Q ss_pred             CCCCcccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCc-eeecCCC-CCCCCCCcEEE--ECCEEEEEecCCCC
Q 045821          197 EPNIFTEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTDS-WLHADAN-MASGWRGPAVV--VDDALYVLDQSSGT  270 (352)
Q Consensus       197 ~~~~~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~-W~~~~~~-~~~~~~~~~~~--~~~~l~~~gg~~~~  270 (352)
                      ...........+.+  ++++++.|+.++     .+..||..+.. |...... ......-..+.  .++.+++.|+.++ 
T Consensus        91 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-  164 (372)
T 1k8k_C           91 VILRINRAARCVRWAPNEKKFAVGSGSR-----VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF-  164 (372)
T ss_dssp             ECCCCSSCEEEEEECTTSSEEEEEETTS-----SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS-
T ss_pred             EeecCCCceeEEEECCCCCEEEEEeCCC-----EEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC-
Confidence            22222222222222  566677665442     24455544332 3222111 11111111222  2667777777666 


Q ss_pred             eEEEEeCC
Q 045821          271 KLMMWQKE  278 (352)
Q Consensus       271 ~v~~yd~~  278 (352)
                      .+.+||..
T Consensus       165 ~i~~~d~~  172 (372)
T 1k8k_C          165 KCRIFSAY  172 (372)
T ss_dssp             CEEEEECC
T ss_pred             CEEEEEcc
Confidence            89999964

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=97.29  E-value=0.022  Score=50.21  Aligned_cols=239  Identities=8%  Similarity=0.029  Sum_probs=108.7

Q ss_pred             CEEEEEEecCC--CCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECC-EEEEEeCCCCCCCCCCeEEEEECCC
Q 045821           69 TWIYAFCRDNK--LERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGK-NAYLLGGCGWSEDATSEVYCYDASM  145 (352)
Q Consensus        69 ~~l~~~gg~~~--~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~d~~t  145 (352)
                      ...+++|....  ......+.+|+  .++.+..+....   .....+....-++ .||+.+..... ...-.+|.+|..+
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~--~~g~~~~~~~~~---~~~p~~l~~spdg~~l~~~~~~~~~-~~~v~~~~~~~~~   86 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNE--ETGESLPLSDAE---VANPSYLIPSADGKFVYSVNEFSKD-QAAVSAFAFDKEK   86 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEET--TTCCEEEEEEEE---CSCCCSEEECTTSSEEEEEECCSST-TCEEEEEEEETTT
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeC--CCCCEEEeeccc---CCCCceEEECCCCCEEEEEEccCCC-CCcEEEEEEeCCC
Confidence            33444665432  33566777888  888887766542   1222222222334 57766542111 1122335556666


Q ss_pred             CeeEecCCCCCc-ceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCc-EEEec----C---CCCc----ccceeEEEE--
Q 045821          146 NTWTDAAPMSTA-RCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNN-WKLHT----E---PNIF----TEIEDSFVM--  210 (352)
Q Consensus       146 ~~W~~~~~~~~~-r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~-W~~~~----~---~~~~----~~~~~~~~~--  210 (352)
                      ++.+.+...+.. ......+.-+..+|+....+  ..+.+|+..++. ...+.    .   -+.+    ....+.+.+  
T Consensus        87 g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~--~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp  164 (361)
T 3scy_A           87 GTLHLLNTQKTMGADPCYLTTNGKNIVTANYSG--GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP  164 (361)
T ss_dssp             TEEEEEEEEECSSSCEEEEEECSSEEEEEETTT--TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT
T ss_pred             CcEEEeeEeccCCCCcEEEEECCCEEEEEECCC--CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC
Confidence            777666544321 12222223234566655322  678888886542 11110    0   0000    011122233  


Q ss_pred             CCE-EEEEccCCCCCCceEEEEEeCCCCc-------eee------cCCCCCCCCCCcEEEECCE-EEEEecCCCCeEEEE
Q 045821          211 DGK-IYIRCSASAATSHVCALVYEPSTDS-------WLH------ADANMASGWRGPAVVVDDA-LYVLDQSSGTKLMMW  275 (352)
Q Consensus       211 ~g~-iyv~GG~~~~~~~~~i~~yd~~~~~-------W~~------~~~~~~~~~~~~~~~~~~~-l~~~gg~~~~~v~~y  275 (352)
                      +|+ ||+.+...     ..+..|+.....       ...      ........-.+.++.-+++ +|+.+... ..+.+|
T Consensus       165 dg~~l~~~~~~~-----~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-~~v~v~  238 (361)
T 3scy_A          165 DGKYLLADDLGT-----DQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG-GTVIAF  238 (361)
T ss_dssp             TSSEEEEEETTT-----TEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT-CEEEEE
T ss_pred             CCCEEEEEeCCC-----CEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCC-CeEEEE
Confidence            564 77764221     245566544332       211      1111111111112233554 66655333 389999


Q ss_pred             eCCCCceEEccCCCCCcC--CCCceEEE-eC-CEEEEEcCC--ceEEEEEcC
Q 045821          276 QKESREWSPVGRLSTLLT--RPPCKLVA-IG-KTIFVIGKG--CSAVVIDVG  321 (352)
Q Consensus       276 d~~~~~W~~~~~~~~~~~--~~~~~~~~-~~-~~i~v~gG~--~~~~~~d~~  321 (352)
                      |..++++..+..++....  .....++. .+ ..||+.+..  ..+.+|++.
T Consensus       239 ~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          239 RYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             EEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             EecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            998887765543321100  11112222 24 457776543  467788875

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=97.28  E-value=0.023  Score=50.96  Aligned_cols=190  Identities=13%  Similarity=0.113  Sum_probs=94.9

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEe-----cCCCCCcceeeeeEEE--CC-EEEEEeCCCCCCceEEEeCCCC
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTD-----AAPMSTARCYFPCGVL--NQ-KIYCIGGLGDTHSWDVYDPRTN  190 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~-----~~~~~~~r~~~~~~~~--~~-~iyv~gG~~~~~~v~~yd~~t~  190 (352)
                      ++.+++.|+.+      ..+.+||..++....     +..+......-..+.+  ++ .+++.|+.+  ..+.+||..+.
T Consensus        93 ~~~~l~s~s~d------g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d--g~i~iwd~~~~  164 (402)
T 2aq5_A           93 NDNVIASGSED------CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD--NVILVWDVGTG  164 (402)
T ss_dssp             CTTEEEEEETT------SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT--SCEEEEETTTT
T ss_pred             CCCEEEEEeCC------CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC--CEEEEEECCCC
Confidence            45666666542      468888988764321     1111100111111222  33 466667655  67899999988


Q ss_pred             cEEEecCCCCcccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCceeecC-CCCCCC-CCCcEEEECCEEEEEe-
Q 045821          191 NWKLHTEPNIFTEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTDSWLHAD-ANMASG-WRGPAVVVDDALYVLD-  265 (352)
Q Consensus       191 ~W~~~~~~~~~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~-~~~~~~-~~~~~~~~~~~l~~~g-  265 (352)
                      +....-...........+.+  ++.+++.|+.++     .+..||+.+.+-...- ...... ........++++++.| 
T Consensus       165 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~  239 (402)
T 2aq5_A          165 AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK-----RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGF  239 (402)
T ss_dssp             EEEEEECTTTCCSCEEEEEECTTSSCEEEEETTS-----EEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEE
T ss_pred             CccEEEecCCCCCceEEEEECCCCCEEEEEecCC-----cEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEec
Confidence            65432210111111122222  677777765542     6888998876543221 111111 1112233477877777 


Q ss_pred             --cCCCCeEEEEeCCCCce-EEccCCCCCcCCCCceEE--EeCCEEEEEcCCc-eEEEEEcCCcc
Q 045821          266 --QSSGTKLMMWQKESREW-SPVGRLSTLLTRPPCKLV--AIGKTIFVIGKGC-SAVVIDVGNIG  324 (352)
Q Consensus       266 --g~~~~~v~~yd~~~~~W-~~~~~~~~~~~~~~~~~~--~~~~~i~v~gG~~-~~~~~d~~~~~  324 (352)
                        +.++ .+.+||..+..- .....+...  .....+.  ..+..+++.|+.+ .+.+||+....
T Consensus       240 ~~~~d~-~i~iwd~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          240 SRMSER-QVALWDTKHLEEPLSLQELDTS--SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             CTTCCE-EEEEEETTBCSSCSEEEECCCC--SSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             cCCCCc-eEEEEcCccccCCceEEeccCC--CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence              3333 899999886432 111111111  1112222  2245566777544 56789988755

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.26  E-value=0.018  Score=48.48  Aligned_cols=145  Identities=11%  Similarity=-0.002  Sum_probs=93.4

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCe
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNT  147 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~  147 (352)
                      ++.||+..|....    +..+|+  .+++-..-. ++   ......+++..+++||+...      ..+.+++||+.+.+
T Consensus        64 ~~~Ly~stG~~g~----v~~iD~--~Tgkv~~~~-l~---~~~FgeGit~~g~~Ly~ltw------~~~~v~V~D~~Tl~  127 (268)
T 3nok_A           64 QGHFFESTGHQGT----LRQLSL--ESAQPVWME-RL---GNIFAEGLASDGERLYQLTW------TEGLLFTWSGMPPQ  127 (268)
T ss_dssp             TTEEEEEETTTTE----EEECCS--SCSSCSEEE-EC---TTCCEEEEEECSSCEEEEES------SSCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCE----EEEEEC--CCCcEEeEE-CC---CCcceeEEEEeCCEEEEEEc------cCCEEEEEECCcCc
Confidence            6889988775322    777899  877654433 44   23344567888999999854      24679999999876


Q ss_pred             eE-ecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEE-EecC--CCCcc-cceeEEEECCEEEEEccCCC
Q 045821          148 WT-DAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWK-LHTE--PNIFT-EIEDSFVMDGKIYIRCSASA  222 (352)
Q Consensus       148 W~-~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~-~~~~--~~~~~-~~~~~~~~~g~iyv~GG~~~  222 (352)
                      -. .++   .+....+++.-++++|+.-|.   +.+..+|+.|.+-. .+.-  -+.+. .-......+|+||+--    
T Consensus       128 ~~~ti~---~~~eGwGLt~Dg~~L~vSdGs---~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanv----  197 (268)
T 3nok_A          128 RERTTR---YSGEGWGLCYWNGKLVRSDGG---TMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANI----  197 (268)
T ss_dssp             EEEEEE---CSSCCCCEEEETTEEEEECSS---SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE----
T ss_pred             EEEEEe---CCCceeEEecCCCEEEEECCC---CEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEE----
Confidence            33 333   233456777778899998763   78999999987532 2321  11111 1122334589999752    


Q ss_pred             CCCceEEEEEeCCCCce
Q 045821          223 ATSHVCALVYEPSTDSW  239 (352)
Q Consensus       223 ~~~~~~i~~yd~~~~~W  239 (352)
                       ...+.|.+.|+.+++-
T Consensus       198 -w~s~~I~vIDp~TG~V  213 (268)
T 3nok_A          198 -WHSSDVLEIDPATGTV  213 (268)
T ss_dssp             -TTCSEEEEECTTTCBE
T ss_pred             -CCCCeEEEEeCCCCcE
Confidence             1234788999988764

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.25  E-value=0.022  Score=56.26  Aligned_cols=172  Identities=9%  Similarity=0.010  Sum_probs=99.7

Q ss_pred             CeEEEEECCCCeeEecCCCCCc-ceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCc---ccceeEEE-
Q 045821          136 SEVYCYDASMNTWTDAAPMSTA-RCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIF---TEIEDSFV-  209 (352)
Q Consensus       136 ~~~~~~d~~t~~W~~~~~~~~~-r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~---~~~~~~~~-  209 (352)
                      ..+++||+.+++++.+.....+ ..-.+.+.- ++.|++...    ..+.+||+.+++|+........   ........ 
T Consensus       427 ~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~----~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  502 (781)
T 3v9f_A          427 GNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH----AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQ  502 (781)
T ss_dssp             EEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET----TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEE
T ss_pred             CCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC----CceEEEeCCCCeEEecccCcccccccceeEEEEE
Confidence            4588999999998877532111 111222222 578877654    4689999999988776532210   11111222 


Q ss_pred             -ECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCC-cEEEE--CCEEEEEecCCCCeE-EEEeCCCCceEE
Q 045821          210 -MDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRG-PAVVV--DDALYVLDQSSGTKL-MMWQKESREWSP  284 (352)
Q Consensus       210 -~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~-~~~~~--~~~l~~~gg~~~~~v-~~yd~~~~~W~~  284 (352)
                       -+|+|++.....      .+.+||+.+++++............ ..+..  +|.|++-.. .  .+ .+||++++++..
T Consensus       503 d~~g~lWigt~~~------Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~--Glv~~~d~~~~~~~~  573 (781)
T 3v9f_A          503 DSEGRFWIGTFGG------GVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-E--GLVCFPSARNFDYQV  573 (781)
T ss_dssp             CTTCCEEEEESSS------CEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-T--EEEEESCTTTCCCEE
T ss_pred             cCCCCEEEEEcCC------CEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-C--CceEEECCCCCcEEE
Confidence             267888853212      3889999999988775321111111 12222  566776543 3  57 999999998876


Q ss_pred             cc---CCCCCcCCCCceEEEe-CCEEEEEcCCceEEEEEcCCcc
Q 045821          285 VG---RLSTLLTRPPCKLVAI-GKTIFVIGKGCSAVVIDVGNIG  324 (352)
Q Consensus       285 ~~---~~~~~~~~~~~~~~~~-~~~i~v~gG~~~~~~~d~~~~~  324 (352)
                      ..   .++..   ...+++.- ++.|++-+ ......||+++..
T Consensus       574 ~~~~~gl~~~---~i~~i~~d~~g~lW~~t-~~Gl~~~~~~~~~  613 (781)
T 3v9f_A          574 FQRKEGLPNT---HIRAISEDKNGNIWAST-NTGISCYITSKKC  613 (781)
T ss_dssp             ECGGGTCSCC---CCCEEEECSSSCEEEEC-SSCEEEEETTTTE
T ss_pred             ccccCCCCCc---eEEEEEECCCCCEEEEc-CCceEEEECCCCc
Confidence            64   24332   22344433 56777765 4567778887654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=97.23  E-value=0.0022  Score=56.91  Aligned_cols=235  Identities=11%  Similarity=0.048  Sum_probs=104.6

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE--CCEEEEEeCCCCCCCCCCeEEEEECCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL--GKNAYLLGGCGWSEDATSEVYCYDASM  145 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t  145 (352)
                      ++.+++.|+.  .+...  +||.  .++.|..+..+..   .........+  ++..++.|+.+      ..+.+||..+
T Consensus        22 ~g~~l~~~~~--d~~i~--iw~~--~~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~s~d------~~v~vwd~~~   86 (377)
T 3dwl_C           22 QRTEFVTTTA--TNQVE--LYEQ--DGNGWKHARTFSD---HDKIVTCVDWAPKSNRIVTCSQD------RNAYVYEKRP   86 (377)
T ss_dssp             SSSEEECCCS--SSCBC--EEEE--ETTEEEECCCBCC---CSSCEEEEEECTTTCCEEEEETT------SSEEEC----
T ss_pred             CCCEEEEecC--CCEEE--EEEc--cCCceEEEEEEec---CCceEEEEEEeCCCCEEEEEeCC------CeEEEEEcCC
Confidence            4555556543  23333  4466  6666666655542   1112222222  45566666543      4578888887


Q ss_pred             Ce-eEecCCCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCc-EEEecCCCCccc-ce-eEEE-ECCEEEEEc
Q 045821          146 NT-WTDAAPMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNN-WKLHTEPNIFTE-IE-DSFV-MDGKIYIRC  218 (352)
Q Consensus       146 ~~-W~~~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~-W~~~~~~~~~~~-~~-~~~~-~~g~iyv~G  218 (352)
                      ++ |.....+.........+.+  +++.++.|+.+  ..+.+||..+.+ |..+..+...+. .. .+.. -++++++.|
T Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~  164 (377)
T 3dwl_C           87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGA--RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG  164 (377)
T ss_dssp             --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESS--SCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred             CCceeeeeEecccCCceEEEEECCCCCEEEEEecC--CeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence            76 4333222111111112222  45666666654  678889988764 322222222111 11 2222 266777776


Q ss_pred             cCCCCCCceEEEEEeCCCCceee----------------cCCCCCCCCCCcEEE--ECCEEEEEecCCCCeEEEEeCCCC
Q 045821          219 SASAATSHVCALVYEPSTDSWLH----------------ADANMASGWRGPAVV--VDDALYVLDQSSGTKLMMWQKESR  280 (352)
Q Consensus       219 G~~~~~~~~~i~~yd~~~~~W~~----------------~~~~~~~~~~~~~~~--~~~~l~~~gg~~~~~v~~yd~~~~  280 (352)
                      +.++     .+..||..+.....                +... .+...-..+.  -++++++.|+.++ .+.+||..+.
T Consensus       165 ~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~-~i~iwd~~~~  237 (377)
T 3dwl_C          165 CADR-----KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDS-SVTIAYPSAP  237 (377)
T ss_dssp             ESSS-----CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTT-EEC-CEECST
T ss_pred             eCCC-----EEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCC-cEEEEECCCC
Confidence            5542     36667764332211                1111 1110011122  2667777777666 8999998876


Q ss_pred             ce--EEccCCCCCcCCCCceEEEeCCEEEEEcCCceEEEEEcCCcccc
Q 045821          281 EW--SPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCSAVVIDVGNIGNI  326 (352)
Q Consensus       281 ~W--~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~d~~~~~w~  326 (352)
                      +-  ..+..+..............++++++.|+.....+|+.....|.
T Consensus       238 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~  285 (377)
T 3dwl_C          238 EQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWA  285 (377)
T ss_dssp             TSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---C
T ss_pred             CCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceE
Confidence            53  11222221101111222335788888887777778887765554

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.23  E-value=0.096  Score=46.85  Aligned_cols=184  Identities=9%  Similarity=-0.014  Sum_probs=93.8

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCee-EecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEec
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTW-TDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHT  196 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W-~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~  196 (352)
                      ++.+++.|+.      ...+.+||..+.+- ..+.....  .-.+++.. ++..++.|+.+  ..+.+||..+.+-...-
T Consensus       150 ~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~s~~~d--~~v~iwd~~~~~~~~~~  219 (420)
T 3vl1_A          150 SGEALISSSQ------DMQLKIWSVKDGSNPRTLIGHRA--TVTDIAIIDRGRNVLSASLD--GTIRLWECGTGTTIHTF  219 (420)
T ss_dssp             TSSEEEEEET------TSEEEEEETTTCCCCEEEECCSS--CEEEEEEETTTTEEEEEETT--SCEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEeC------CCeEEEEeCCCCcCceEEcCCCC--cEEEEEEcCCCCEEEEEcCC--CcEEEeECCCCceeEEe
Confidence            4555566653      34688899876642 11111111  11122222 55666666655  67889999877533221


Q ss_pred             CCCC-cccce-eEE----------------------EECCEEEEEccCCCCCCceEEEEEeCCCCceee-cCCCCCCCCC
Q 045821          197 EPNI-FTEIE-DSF----------------------VMDGKIYIRCSASAATSHVCALVYEPSTDSWLH-ADANMASGWR  251 (352)
Q Consensus       197 ~~~~-~~~~~-~~~----------------------~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~-~~~~~~~~~~  251 (352)
                      .... ..... ..+                      .-++++.+.|+.++     .+..||..+.+-.. +.....  ..
T Consensus       220 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~--~~  292 (420)
T 3vl1_A          220 NRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG-----VITVHNVFSKEQTIQLPSKFT--CS  292 (420)
T ss_dssp             CBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS-----CEEEEETTTCCEEEEECCTTS--SC
T ss_pred             ecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC-----eEEEEECCCCceeEEcccccC--CC
Confidence            1111 11100 111                      12567777765543     47888887665322 211111  11


Q ss_pred             CcEEE--ECCE-EEEEecCCCCeEEEEeCCCCce--EEccCCCCCcCCCCceEEEeCCEEEEEcCCce-EEEEEcCCc
Q 045821          252 GPAVV--VDDA-LYVLDQSSGTKLMMWQKESREW--SPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCS-AVVIDVGNI  323 (352)
Q Consensus       252 ~~~~~--~~~~-l~~~gg~~~~~v~~yd~~~~~W--~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~-~~~~d~~~~  323 (352)
                      ...+.  -++. +++.|+.++ .+.+||..+..-  ..+..-.   .....++...++++++.|+.+. +.++|+...
T Consensus       293 v~~~~~~~~~~~~l~~g~~dg-~i~vwd~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          293 CNSLTVDGNNANYIYAGYENG-MLAQWDLRSPECPVGEFLINE---GTPINNVYFAAGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             EEEEEECSSCTTEEEEEETTS-EEEEEETTCTTSCSEEEEEST---TSCEEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred             ceeEEEeCCCCCEEEEEeCCC-eEEEEEcCCCcCchhhhhccC---CCCceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence            11222  2454 777777666 899999987532  2222111   1222344455788888887765 557887763

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.22  E-value=0.052  Score=47.15  Aligned_cols=147  Identities=12%  Similarity=0.144  Sum_probs=76.5

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecC
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTE  197 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~  197 (352)
                      ++..++.|+.      ...+.+||..+++-...-.... ..-.+++.. +++.++.|+.+  ..+.+||..+.+-...-.
T Consensus       133 dg~~l~~g~~------dg~v~i~~~~~~~~~~~~~~~~-~~v~~~~~spdg~~lasg~~d--g~i~iwd~~~~~~~~~~~  203 (321)
T 3ow8_A          133 DSQYLATGTH------VGKVNIFGVESGKKEYSLDTRG-KFILSIAYSPDGKYLASGAID--GIINIFDIATGKLLHTLE  203 (321)
T ss_dssp             TSSEEEEECT------TSEEEEEETTTCSEEEEEECSS-SCEEEEEECTTSSEEEEEETT--SCEEEEETTTTEEEEEEC
T ss_pred             CCCEEEEEcC------CCcEEEEEcCCCceeEEecCCC-ceEEEEEECCCCCEEEEEcCC--CeEEEEECCCCcEEEEEc
Confidence            4556666653      3457788887665322111111 111112221 56667777665  678999998875332211


Q ss_pred             CCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEE--ECCEEEEEecCCCCeEEEE
Q 045821          198 PNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVV--VDDALYVLDQSSGTKLMMW  275 (352)
Q Consensus       198 ~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~--~~~~l~~~gg~~~~~v~~y  275 (352)
                      .....-...+..-++++++.|+.++     .+..||..+......-.  .+...-..+.  .++..++.|+.++ .+.+|
T Consensus       204 ~h~~~v~~l~~spd~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~s~s~D~-~v~iw  275 (321)
T 3ow8_A          204 GHAMPIRSLTFSPDSQLLVTASDDG-----YIKIYDVQHANLAGTLS--GHASWVLNVAFCPDDTHFVSSSSDK-SVKVW  275 (321)
T ss_dssp             CCSSCCCEEEECTTSCEEEEECTTS-----CEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTS-CEEEE
T ss_pred             ccCCceeEEEEcCCCCEEEEEcCCC-----eEEEEECCCcceeEEEc--CCCCceEEEEECCCCCEEEEEeCCC-cEEEE
Confidence            1111111112223677777765543     47788887665432211  1111111122  2667777777766 89999


Q ss_pred             eCCCCce
Q 045821          276 QKESREW  282 (352)
Q Consensus       276 d~~~~~W  282 (352)
                      |..+.+-
T Consensus       276 d~~~~~~  282 (321)
T 3ow8_A          276 DVGTRTC  282 (321)
T ss_dssp             ETTTTEE
T ss_pred             eCCCCEE
Confidence            9987654

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=97.21  E-value=0.017  Score=52.90  Aligned_cols=200  Identities=12%  Similarity=0.198  Sum_probs=110.2

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCc-------
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNN-------  191 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~-------  191 (352)
                      ++.+|+|-|        +..|.||..+++...-.-...+. --++...++++|++-|    +..++||+.+.+       
T Consensus       158 ~~~~yfFkG--------~~yw~yd~~~~~~~~~~w~gi~~-iDAA~~~~g~~YfFkG----~~y~rfd~~~~~v~~gyPk  224 (460)
T 1qhu_A          158 DEGILFFQG--------NRKWFWDLTTGTKKERSWPAVGN-CTSALRWLGRYYCFQG----NQFLRFNPVSGEVPPGYPL  224 (460)
T ss_dssp             SSEEEEEET--------TEEEEEETTTTEEEEECCTTSCC-CSEEEEETTEEEEEET----TEEEEECTTTCCCCTTCCE
T ss_pred             CCeEEEEec--------ccEEEEecccceeecccCCCCCc-cchheeeCCceEEEEC----CEEEEEcCccCcccCCCCc
Confidence            678899977        56899999887654321111222 2445555799999999    778999987653       


Q ss_pred             -----EEEecCCCC-------------------cccceeEEE-ECCEEEEEccCCCCCCceEEEEEeCCCCceee--cCC
Q 045821          192 -----WKLHTEPNI-------------------FTEIEDSFV-MDGKIYIRCSASAATSHVCALVYEPSTDSWLH--ADA  244 (352)
Q Consensus       192 -----W~~~~~~~~-------------------~~~~~~~~~-~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~--~~~  244 (352)
                           |..++....                   .....+++. .+|++|.+-|..       .|++|...+.+..  +..
T Consensus       225 ~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg~~-------yWR~~~~~~~~~p~~Is~  297 (460)
T 1qhu_A          225 DVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSGSH-------YWRLDTNRDGWHSWPIAH  297 (460)
T ss_dssp             EHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEETTE-------EEECTTGGGCCCCEEGGG
T ss_pred             chhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeCCE-------EEEEecCCCCcCccchhh
Confidence                 211111000                   001123333 468999986543       7777765433211  111


Q ss_pred             CC-C-CCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceEEcc----------CCCCC--cCCCCceEEE-eCCEEEEE
Q 045821          245 NM-A-SGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVG----------RLSTL--LTRPPCKLVA-IGKTIFVI  309 (352)
Q Consensus       245 ~~-~-~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~----------~~~~~--~~~~~~~~~~-~~~~i~v~  309 (352)
                      .. . +..--++...++++|++-|.   .+|+|+...+ .+.+.          .+|..  ..+-.+++.. ..+++|+|
T Consensus       298 ~WpglP~~IDAAf~~~~~~yfFkG~---~yw~f~~~~g-~~~~~GyPK~I~~~lGlp~~~~~~~IDAA~~~~~~~ktyfF  373 (460)
T 1qhu_A          298 QWPQGPSTVDAAFSWEDKLYLIQDT---KVYVFLTKGG-YTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIM  373 (460)
T ss_dssp             TCTTSCSSCSEEEEETTEEEEEETT---EEEEEECSBS-CEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEE
T ss_pred             hccCCCCCCcEEEEECCeEEEEeCC---EEEEEeCCCC-ceecCCCCeEHHHhccCCCccccCcccEEEEeCCCCEEEEE
Confidence            00 0 01122344568999999876   8999986531 22222          23332  1112233322 46899999


Q ss_pred             cCCceEEEEEcCCcccccceEEeccCCCCCCCCcceee
Q 045821          310 GKGCSAVVIDVGNIGNIGGIMVSSSIPKLNDNDDIISC  347 (352)
Q Consensus       310 gG~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~  347 (352)
                      -|. ..+-||.+..  -+  .+....|+++.+.+.+-|
T Consensus       374 kG~-~ywryd~~~~--Pr--~i~~~~~gi~~~vdAaf~  406 (460)
T 1qhu_A          374 AGR-RLWWLDLKSG--AQ--ATWTELPWPHEKVDGALC  406 (460)
T ss_dssp             ETT-EEEEEEGGGG--GG--CCCEEECCSCSCCSEEEE
T ss_pred             ECC-EEEEEECCCC--cc--chhhhCCCCCCCcCEEEe
Confidence            875 5667997743  11  122224556666665554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.20  E-value=0.045  Score=46.33  Aligned_cols=187  Identities=9%  Similarity=0.083  Sum_probs=99.5

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCC--Cc--ceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCcE
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMS--TA--RCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNNW  192 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~--~~--r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~W  192 (352)
                      ++.+|+.+..      ...+.+||+.......+....  ..  .....++..  ++.+|+.+.... ..+.+||.....-
T Consensus        40 ~g~l~v~~~~------~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~-~~i~~~d~~g~~~  112 (286)
T 1q7f_A           40 QNDIIVADTN------NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT-HQIQIYNQYGQFV  112 (286)
T ss_dssp             TCCEEEEEGG------GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG-CEEEEECTTSCEE
T ss_pred             CCCEEEEECC------CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCC-CEEEEECCCCcEE
Confidence            4677877532      346888888755444443211  01  122334442  679999874211 6789999655444


Q ss_pred             EEecCCCCcccceeEEE-ECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEE--ECCEEEEEecCCC
Q 045821          193 KLHTEPNIFTEIEDSFV-MDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVV--VDDALYVLDQSSG  269 (352)
Q Consensus       193 ~~~~~~~~~~~~~~~~~-~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~--~~~~l~~~gg~~~  269 (352)
                      +.+... .......+++ -+|++|+.....     ..+.+||+.......+.... .......+.  -++.+|+.+...+
T Consensus       113 ~~~~~~-~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~~g~~~~~~~~~~-~~~~p~~i~~~~~g~l~v~~~~~~  185 (286)
T 1q7f_A          113 RKFGAT-ILQHPRGVTVDNKGRIIVVECKV-----MRVIIFDQNGNVLHKFGCSK-HLEFPNGVVVNDKQEIFISDNRAH  185 (286)
T ss_dssp             EEECTT-TCSCEEEEEECTTSCEEEEETTT-----TEEEEECTTSCEEEEEECTT-TCSSEEEEEECSSSEEEEEEGGGT
T ss_pred             EEecCc-cCCCceEEEEeCCCCEEEEECCC-----CEEEEEcCCCCEEEEeCCCC-ccCCcEEEEECCCCCEEEEECCCC
Confidence            444321 1111122222 367899985322     36888997655444443211 111111233  3578888765444


Q ss_pred             CeEEEEeCCCCceEEccCCCCCcCCCCceEEE-eCCEEEEEcCCc--eEEEEEcCC
Q 045821          270 TKLMMWQKESREWSPVGRLSTLLTRPPCKLVA-IGKTIFVIGKGC--SAVVIDVGN  322 (352)
Q Consensus       270 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~i~v~gG~~--~~~~~d~~~  322 (352)
                       .|.+||+..+....+.....  .....+++. .++.||+.....  .+.+||++.
T Consensus       186 -~i~~~~~~g~~~~~~~~~g~--~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g  238 (286)
T 1q7f_A          186 -CVKVFNYEGQYLRQIGGEGI--TNYPIGVGINSNGEILIADNHNNFNLTIFTQDG  238 (286)
T ss_dssp             -EEEEEETTCCEEEEESCTTT--SCSEEEEEECTTCCEEEEECSSSCEEEEECTTS
T ss_pred             -EEEEEcCCCCEEEEEccCCc--cCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC
Confidence             89999997765555532110  111123333 366888877543  677888653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=97.13  E-value=0.051  Score=47.63  Aligned_cols=145  Identities=8%  Similarity=0.070  Sum_probs=73.5

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCc-EEEe
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNN-WKLH  195 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~-W~~~  195 (352)
                      ++..++.|+.+      ..+.+||..++.+..+..+......-..+.+  +++.++.|+.+  ..+.+||..+.. +..+
T Consensus        72 ~g~~l~s~s~D------~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D--~~v~iwd~~~~~~~~~~  143 (345)
T 3fm0_A           72 CGNYLASASFD------ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD--KSVWVWEVDEEDEYECV  143 (345)
T ss_dssp             TSSEEEEEETT------SCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETT--SCEEEEEECTTSCEEEE
T ss_pred             CCCEEEEEECC------CcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECC--CeEEEEECCCCCCeEEE
Confidence            45566666643      3467778777765544332211111112222  56677777765  678888887643 3333


Q ss_pred             cCCCCcccceeEEE--ECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEE--ECCEEEEEecCCCCe
Q 045821          196 TEPNIFTEIEDSFV--MDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVV--VDDALYVLDQSSGTK  271 (352)
Q Consensus       196 ~~~~~~~~~~~~~~--~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~--~~~~l~~~gg~~~~~  271 (352)
                      ..+.........+.  -++++++.|+.++     .+..||..++.|..+.....+...-..+.  .+++.++.|+.++ .
T Consensus       144 ~~~~~h~~~v~~~~~~p~~~~l~s~s~d~-----~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~-~  217 (345)
T 3fm0_A          144 SVLNSHTQDVKHVVWHPSQELLASASYDD-----TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR-T  217 (345)
T ss_dssp             EEECCCCSCEEEEEECSSSSCEEEEETTS-----CEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS-C
T ss_pred             EEecCcCCCeEEEEECCCCCEEEEEeCCC-----cEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCC-e
Confidence            21111111111222  2566777765543     46778877777764322111111111222  3667777777666 7


Q ss_pred             EEEEeC
Q 045821          272 LMMWQK  277 (352)
Q Consensus       272 v~~yd~  277 (352)
                      +.+||.
T Consensus       218 v~iW~~  223 (345)
T 3fm0_A          218 VRIWRQ  223 (345)
T ss_dssp             EEEEEE
T ss_pred             EEEecc
Confidence            777764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.13  E-value=0.057  Score=47.20  Aligned_cols=137  Identities=12%  Similarity=0.100  Sum_probs=71.1

Q ss_pred             CeEEEEECCCCeeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEE
Q 045821          136 SEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKI  214 (352)
Q Consensus       136 ~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~i  214 (352)
                      ..+.+||..+++-...-.-..... .+++.. ++.+++.|+.+  ..+.+||..+..-...-......-...+..-++++
T Consensus       164 ~~i~~wd~~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~sg~~d--~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~  240 (340)
T 1got_B          164 TTCALWDIETGQQTTTFTGHTGDV-MSLSLAPDTRLFVSGACD--ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA  240 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCE-EEEEECTTSSEEEEEETT--SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSE
T ss_pred             CcEEEEECCCCcEEEEEcCCCCce-EEEEECCCCCEEEEEeCC--CcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCE
Confidence            458889998876432211111111 122222 56777777766  68899999877543321111111111112226777


Q ss_pred             EEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEE--EECCEEEEEecCCCCeEEEEeCCCCc
Q 045821          215 YIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAV--VVDDALYVLDQSSGTKLMMWQKESRE  281 (352)
Q Consensus       215 yv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~--~~~~~l~~~gg~~~~~v~~yd~~~~~  281 (352)
                      ++.|+.++     .+..||..+.+-...-...........+  ..++++++.|+.++ .+.+||..+..
T Consensus       241 l~s~s~d~-----~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~-~i~vwd~~~~~  303 (340)
T 1got_B          241 FATGSDDA-----TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF-NCNVWDALKAD  303 (340)
T ss_dssp             EEEEETTS-----CEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS-EEEEEETTTCC
T ss_pred             EEEEcCCC-----cEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCC-eEEEEEcccCc
Confidence            77766553     4778888765432211101100011112  23677777777666 89999987644

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.11  E-value=0.01  Score=58.45  Aligned_cols=231  Identities=6%  Similarity=0.072  Sum_probs=110.8

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE--C--CEEEEEeCCCCCCCCCCeEEEEEC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL--G--KNAYLLGGCGWSEDATSEVYCYDA  143 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~d~  143 (352)
                      ++..++.|+.  .+.  +.+||.  ...++..+..+..   .........+  +  +..++.|+.+      ..+.+||.
T Consensus        20 dg~~latg~~--dg~--I~vwd~--~~~~~~~~~~l~~---h~~~V~~l~~s~~~~~~~l~s~s~D------g~I~vwd~   84 (753)
T 3jro_A           20 YGKRLATCSS--DKT--IKIFEV--EGETHKLIDTLTG---HEGPVWRVDWAHPKFGTILASCSYD------GKVLIWKE   84 (753)
T ss_dssp             SSCCEEEEET--TTE--EEEEEE--ETTEEEEEEEECC---CSSCEEEEEECCTTSCSEEEEEETT------SCEEEEEE
T ss_pred             CCCeEEEEEC--CCc--EEEEec--CCCCCccceeccC---CcCceEEEEecCCCCCCEEEEEeCC------CeEEEEEC
Confidence            3445556653  233  344466  5556655554441   1222222332  2  5566666643      45888999


Q ss_pred             CCCeeEecCCCCCcceeeeeEEE--C--CEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccc-eeEEEE--------
Q 045821          144 SMNTWTDAAPMSTARCYFPCGVL--N--QKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEI-EDSFVM--------  210 (352)
Q Consensus       144 ~t~~W~~~~~~~~~r~~~~~~~~--~--~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~-~~~~~~--------  210 (352)
                      .+++|..+..+.........+.+  +  +.+++.|+.+  ..+.+||..+..-............ ......        
T Consensus        85 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d--g~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~  162 (753)
T 3jro_A           85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD--GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (753)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT--SEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred             CCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCC--CcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence            98887665543322222222222  3  6677777755  6788899877621111000000111 111111        


Q ss_pred             ------CCEEEEEccCCCCCCceEEEEEeCCC--CceeecCCCCCCCCCCcEEE--EC---CEEEEEecCCCCeEEEEeC
Q 045821          211 ------DGKIYIRCSASAATSHVCALVYEPST--DSWLHADANMASGWRGPAVV--VD---DALYVLDQSSGTKLMMWQK  277 (352)
Q Consensus       211 ------~g~iyv~GG~~~~~~~~~i~~yd~~~--~~W~~~~~~~~~~~~~~~~~--~~---~~l~~~gg~~~~~v~~yd~  277 (352)
                            ++.+++.|+.++     .+..||..+  ..+..+.....+...-..+.  -+   +.+++.|+.++ .+.+||.
T Consensus       163 ~~~~~~d~~~l~sgs~dg-----~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg-~I~iwd~  236 (753)
T 3jro_A          163 EHNGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR-TCIIWTQ  236 (753)
T ss_dssp             ----CGGGCCEEEEETTS-----CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS-CEEEEEE
T ss_pred             ccccCCCCCEEEEEECCC-----eEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC-EEEEecC
Confidence                  356666665543     355666543  33433322111111111222  24   78888888776 8999998


Q ss_pred             CCCc--eE-EccCCCCCcCCCCceEE-EeCCEEEEEcCCce-EEEEEcCC
Q 045821          278 ESRE--WS-PVGRLSTLLTRPPCKLV-AIGKTIFVIGKGCS-AVVIDVGN  322 (352)
Q Consensus       278 ~~~~--W~-~~~~~~~~~~~~~~~~~-~~~~~i~v~gG~~~-~~~~d~~~  322 (352)
                      .+.+  +. .+..... ......++. ..+++.++.|+.+. +.+||+..
T Consensus       237 ~~~~~~~~~~~~~~~~-~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          237 DNEQGPWKKTLLKEEK-FPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             SSSSSCCBCCBSSSSC-CSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             CCCCCcceeEEeccCC-CCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            8753  11 1111111 111112222 23566666666554 55788773

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.09  E-value=0.048  Score=48.05  Aligned_cols=145  Identities=7%  Similarity=0.031  Sum_probs=74.4

Q ss_pred             CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE----CCEEEEEccCCCCCCceEEEEEeCCCCceeec
Q 045821          167 NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM----DGKIYIRCSASAATSHVCALVYEPSTDSWLHA  242 (352)
Q Consensus       167 ~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~----~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~  242 (352)
                      ++..++.++.+  ..+.+||..+.+-...-  ........++.+    ++.+++.|+.++     .+..||..+.+....
T Consensus       165 ~~~~l~t~s~D--~~v~lwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~g~~l~sgs~Dg-----~v~~wd~~~~~~~~~  235 (354)
T 2pbi_B          165 SDMQILTASGD--GTCALWDVESGQLLQSF--HGHGADVLCLDLAPSETGNTFVSGGCDK-----KAMVWDMRSGQCVQA  235 (354)
T ss_dssp             SSSEEEEEETT--SEEEEEETTTCCEEEEE--ECCSSCEEEEEECCCSSCCEEEEEETTS-----CEEEEETTTCCEEEE
T ss_pred             CCCEEEEEeCC--CcEEEEeCCCCeEEEEE--cCCCCCeEEEEEEeCCCCCEEEEEeCCC-----eEEEEECCCCcEEEE
Confidence            34444555544  67889999887643221  111111111212    456777766553     478888887765432


Q ss_pred             CCCCCCCCCCcEEE--ECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceE-EEeCCEEEEEcCCc-eEEEE
Q 045821          243 DANMASGWRGPAVV--VDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKL-VAIGKTIFVIGKGC-SAVVI  318 (352)
Q Consensus       243 ~~~~~~~~~~~~~~--~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~i~v~gG~~-~~~~~  318 (352)
                      -....  ..-..+.  .++.+++.|+.++ .+.+||..++.-..+-..... .....++ ...++++++.|+.+ .+.+|
T Consensus       236 ~~~h~--~~v~~v~~~p~~~~l~s~s~D~-~v~lwd~~~~~~~~~~~~~~~-~~~~~~~~~s~~g~~l~~g~~d~~i~vw  311 (354)
T 2pbi_B          236 FETHE--SDVNSVRYYPSGDAFASGSDDA-TCRLYDLRADREVAIYSKESI-IFGASSVDFSLSGRLLFAGYNDYTINVW  311 (354)
T ss_dssp             ECCCS--SCEEEEEECTTSSEEEEEETTS-CEEEEETTTTEEEEEECCTTC-CSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             ecCCC--CCeEEEEEeCCCCEEEEEeCCC-eEEEEECCCCcEEEEEcCCCc-ccceeEEEEeCCCCEEEEEECCCcEEEE
Confidence            11111  1111222  2567777777766 899999987643322111110 0111122 22356666666655 46689


Q ss_pred             EcCCcc
Q 045821          319 DVGNIG  324 (352)
Q Consensus       319 d~~~~~  324 (352)
                      |+.+..
T Consensus       312 d~~~~~  317 (354)
T 2pbi_B          312 DVLKGS  317 (354)
T ss_dssp             ETTTCS
T ss_pred             ECCCCc
Confidence            986543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.09  E-value=0.013  Score=51.27  Aligned_cols=227  Identities=11%  Similarity=0.027  Sum_probs=110.4

Q ss_pred             CceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCccee
Q 045821           81 ERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCY  160 (352)
Q Consensus        81 ~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~  160 (352)
                      .....+.+|+  .++.+..+.....  ..........-++++|+.+..    .....+++||..+++++.+.........
T Consensus        16 ~~i~v~~~d~--~tg~~~~~~~~~~--~~~p~~~a~spdg~l~~~~~~----~~~~~v~~~~~~~g~~~~~~~~~~~~~~   87 (347)
T 3hfq_A           16 QGIYQGTLDT--TAKTLTNDGLLAA--TQNPTYLALSAKDCLYSVDKE----DDEGGIAAWQIDGQTAHKLNTVVAPGTP   87 (347)
T ss_dssp             CEEEEEEEET--TTTEEEEEEEEEE--CSCCCCEEECTTCEEEEEEEE----TTEEEEEEEEEETTEEEEEEEEEEESCC
T ss_pred             CCEEEEEEcC--CCCeEEEeeeeec--cCCcceEEEccCCeEEEEEec----CCCceEEEEEecCCcEEEeeeeecCCCC
Confidence            3456778888  8888776543221  111122223336777776532    1236789999988887666542211111


Q ss_pred             -eeeEEE-CC-EEEEEeCCCCCCceEEEeCC-CCcEEEecCCCC---c------ccceeEEE--ECCEEEEEccCCCCCC
Q 045821          161 -FPCGVL-NQ-KIYCIGGLGDTHSWDVYDPR-TNNWKLHTEPNI---F------TEIEDSFV--MDGKIYIRCSASAATS  225 (352)
Q Consensus       161 -~~~~~~-~~-~iyv~gG~~~~~~v~~yd~~-t~~W~~~~~~~~---~------~~~~~~~~--~~g~iyv~GG~~~~~~  225 (352)
                       ..++.- ++ .+|+.+..+  ..+.+||.. +...+.+.....   .      ......+.  -+|++|+.+...    
T Consensus        88 p~~~a~spdg~~l~~~~~~~--~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~----  161 (347)
T 3hfq_A           88 PAYVAVDEARQLVYSANYHK--GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGS----  161 (347)
T ss_dssp             CSEEEEETTTTEEEEEETTT--TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTT----
T ss_pred             CEEEEECCCCCEEEEEeCCC--CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCC----
Confidence             122222 44 577765322  567788875 334433321110   0      00112222  267777764322    


Q ss_pred             ceEEEEEeCC-CCceeecCC---CCCCCCCCcEEEECCE-EEEEecCCCCeEEEEeCC--CCceEEccC---CCCCcCC-
Q 045821          226 HVCALVYEPS-TDSWLHADA---NMASGWRGPAVVVDDA-LYVLDQSSGTKLMMWQKE--SREWSPVGR---LSTLLTR-  294 (352)
Q Consensus       226 ~~~i~~yd~~-~~~W~~~~~---~~~~~~~~~~~~~~~~-l~~~gg~~~~~v~~yd~~--~~~W~~~~~---~~~~~~~-  294 (352)
                       ..+..||.. +++...+..   .....-...++.-+++ +|+.+...+ .+.+||..  ++++..+..   .+..... 
T Consensus       162 -~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~-~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~  239 (347)
T 3hfq_A          162 -DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSS-QIASLKYDTQTGAFTQLGIVKTIPADYTAH  239 (347)
T ss_dssp             -TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTT-EEEEEEEETTTTEEEEEEEEESSCTTCCSC
T ss_pred             -CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCC-EEEEEEecCCCCceEEeeeeeecCCCCCCC
Confidence             257778876 555544321   1110101112333565 666654443 66666655  566654432   2321111 


Q ss_pred             C-CceEE-EeCC-EEEEEcC-CceEEEEEcCCc
Q 045821          295 P-PCKLV-AIGK-TIFVIGK-GCSAVVIDVGNI  323 (352)
Q Consensus       295 ~-~~~~~-~~~~-~i~v~gG-~~~~~~~d~~~~  323 (352)
                      . ...++ ..++ .||+.+. ...+.+||+...
T Consensus       240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~  272 (347)
T 3hfq_A          240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD  272 (347)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred             CcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence            1 11122 2244 5777653 456778998743

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.07  E-value=0.079  Score=48.00  Aligned_cols=188  Identities=13%  Similarity=0.115  Sum_probs=99.3

Q ss_pred             EEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEE
Q 045821          115 FEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKL  194 (352)
Q Consensus       115 ~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~  194 (352)
                      ....++..++.|+.+      ..+.+||..+.+-...-....  ..-.+..+++.+++.|+.+  ..+.+||..+.+-..
T Consensus       138 ~~~~d~~~l~~g~~d------g~i~iwd~~~~~~~~~~~~h~--~~v~~l~~~~~~l~sg~~d--g~i~vwd~~~~~~~~  207 (435)
T 1p22_A          138 CLQYDDQKIVSGLRD------NTIKIWDKNTLECKRILTGHT--GSVLCLQYDERVIITGSSD--STVRVWDVNTGEMLN  207 (435)
T ss_dssp             EEECCSSEEEEEESS------SCEEEEESSSCCEEEEECCCS--SCEEEEECCSSEEEEEETT--SCEEEEESSSCCEEE
T ss_pred             EEEECCCEEEEEeCC------CeEEEEeCCCCeEEEEEcCCC--CcEEEEEECCCEEEEEcCC--CeEEEEECCCCcEEE
Confidence            344467777777643      458889988765332211111  1112233377777777765  688999998876433


Q ss_pred             ecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeec-CCCCCCCCCCcEEEECCEEEEEecCCCCeEE
Q 045821          195 HTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHA-DANMASGWRGPAVVVDDALYVLDQSSGTKLM  273 (352)
Q Consensus       195 ~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~-~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~  273 (352)
                      .-  ........++.+++..++.|+.++     .+..||..+..-... ............+..+++.++.|+.++ .+.
T Consensus       208 ~~--~~h~~~v~~l~~~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg-~i~  279 (435)
T 1p22_A          208 TL--IHHCEAVLHLRFNNGMMVTCSKDR-----SIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDR-TIK  279 (435)
T ss_dssp             EE--CCCCSCEEEEECCTTEEEEEETTS-----CEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTS-EEE
T ss_pred             EE--cCCCCcEEEEEEcCCEEEEeeCCC-----cEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCC-eEE
Confidence            21  111222233444555666665543     477888766542211 000111111123444667777777666 899


Q ss_pred             EEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEcCCc-eEEEEEcCCcc
Q 045821          274 MWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGC-SAVVIDVGNIG  324 (352)
Q Consensus       274 ~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~-~~~~~d~~~~~  324 (352)
                      +||..+.+-...  +.. ......++. .++..++.|+.+ .+.+||+.+..
T Consensus       280 vwd~~~~~~~~~--~~~-~~~~v~~~~-~~~~~l~~g~~dg~i~iwd~~~~~  327 (435)
T 1p22_A          280 VWNTSTCEFVRT--LNG-HKRGIACLQ-YRDRLVVSGSSDNTIRLWDIECGA  327 (435)
T ss_dssp             EEETTTCCEEEE--EEC-CSSCEEEEE-EETTEEEEEETTSCEEEEETTTCC
T ss_pred             EEECCcCcEEEE--EcC-CCCcEEEEE-eCCCEEEEEeCCCeEEEEECCCCC
Confidence            999987654322  111 011112333 345555555544 56689987643

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=97.07  E-value=0.069  Score=47.58  Aligned_cols=188  Identities=9%  Similarity=0.007  Sum_probs=89.5

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcc--------------eeeeeEEECCEEEEEeCCCCCCceEE
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTAR--------------CYFPCGVLNQKIYCIGGLGDTHSWDV  184 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r--------------~~~~~~~~~~~iyv~gG~~~~~~v~~  184 (352)
                      ++..++.++.      ...+.+||..+++....-......              ....++...+..+++++.+  ..+.+
T Consensus       160 ~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~i~~  231 (425)
T 1r5m_A          160 DGTHIISMDV------ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK--GAIFV  231 (425)
T ss_dssp             TSSEEEEEET------TCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGG--GCEEE
T ss_pred             CCCEEEEEec------CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC--CeEEE
Confidence            4445555543      245788898877643322221111              0222222333335556544  67899


Q ss_pred             EeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEE
Q 045821          185 YDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVL  264 (352)
Q Consensus       185 yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~  264 (352)
                      ||..+..-...-..........+..-++++++.|+.++     .+..||..+.+-...-..............++ +++.
T Consensus       232 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~  305 (425)
T 1r5m_A          232 YQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDG-----TLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVIS  305 (425)
T ss_dssp             EETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTS-----CEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEE
T ss_pred             EEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCC-----EEEEEECCCCccceEecCCCccEEEEEECCCC-EEEE
Confidence            99987642211111111111122223666666665442     47788876654322211111111111122355 6666


Q ss_pred             ecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEE-EeCCEEEEEcCCc-eEEEEEcCCcc
Q 045821          265 DQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLV-AIGKTIFVIGKGC-SAVVIDVGNIG  324 (352)
Q Consensus       265 gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~i~v~gG~~-~~~~~d~~~~~  324 (352)
                      ++.++ .+.+||..+.+-...-....   ....++. ..++++++.|+.+ .+.+||+....
T Consensus       306 ~~~d~-~i~i~d~~~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          306 CSMDG-SVRLWSLKQNTLLALSIVDG---VPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             EETTS-EEEEEETTTTEEEEEEECTT---CCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred             EeCCC-cEEEEECCCCcEeEecccCC---ccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            66655 89999998765433221111   1111222 2245566666544 56789987654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=97.04  E-value=0.04  Score=49.70  Aligned_cols=187  Identities=10%  Similarity=-0.018  Sum_probs=87.7

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCcEEEec
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNNWKLHT  196 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~  196 (352)
                      ++.+++.|+.++      .+.+||..+.+-..  .+......-..+.+  ++..++.|+.+  ..+.+||..+......-
T Consensus       161 ~~~~l~sgs~D~------~i~iwd~~~~~~~~--~~~~h~~~V~~v~~~p~~~~l~s~s~D--~~i~~wd~~~~~~~~~~  230 (410)
T 1vyh_C          161 SGKLLASCSADM------TIKLWDFQGFECIR--TMHGHDHNVSSVSIMPNGDHIVSASRD--KTIKMWEVQTGYCVKTF  230 (410)
T ss_dssp             TSSEEEEEETTS------CCCEEETTSSCEEE--CCCCCSSCEEEEEECSSSSEEEEEETT--SEEEEEETTTCCEEEEE
T ss_pred             CCCEEEEEeCCC------eEEEEeCCCCceeE--EEcCCCCCEEEEEEeCCCCEEEEEeCC--CeEEEEECCCCcEEEEE
Confidence            456666776543      46677887654322  12111111112222  45666667655  68899999887643221


Q ss_pred             CCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCC-----------------Cc---EEE
Q 045821          197 EPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWR-----------------GP---AVV  256 (352)
Q Consensus       197 ~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~-----------------~~---~~~  256 (352)
                      .............-++.+++.|+.++     .+..||..+......-........                 ..   ...
T Consensus       231 ~~h~~~v~~~~~~~~g~~l~s~s~D~-----~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (410)
T 1vyh_C          231 TGHREWVRMVRPNQDGTLIASCSNDQ-----TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG  305 (410)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred             eCCCccEEEEEECCCCCEEEEEcCCC-----eEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccC
Confidence            11111111111222567777766553     466777766544321100000000                 00   001


Q ss_pred             ECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEE-EeCCEEEEEcCCce-EEEEEcCCcc
Q 045821          257 VDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLV-AIGKTIFVIGKGCS-AVVIDVGNIG  324 (352)
Q Consensus       257 ~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~i~v~gG~~~-~~~~d~~~~~  324 (352)
                      ..+.+++.|+.++ .+.+||..++.-...  +.. ......++. ..+++.++.|+.+. +.++|.....
T Consensus       306 ~~g~~l~sgs~D~-~i~iwd~~~~~~~~~--~~~-h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~  371 (410)
T 1vyh_C          306 KPGPFLLSGSRDK-TIKMWDVSTGMCLMT--LVG-HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR  371 (410)
T ss_dssp             --CCEEEEEETTS-EEEEEETTTTEEEEE--EEC-CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred             CCCCEEEEEeCCC-eEEEEECCCCceEEE--EEC-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            1255667777665 899999987653211  111 001111222 23455555565554 6688886544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.03  E-value=0.18  Score=45.79  Aligned_cols=177  Identities=11%  Similarity=0.055  Sum_probs=92.9

Q ss_pred             ECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecC
Q 045821          118 LGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTE  197 (352)
Q Consensus       118 ~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~  197 (352)
                      .++..++.|+.+      ..+.+||..+.+-...-.............-++..++.|+.+  ..+.+||..+.+-...  
T Consensus       278 ~~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d--g~i~vwd~~~~~~~~~--  347 (464)
T 3v7d_B          278 GHGNIVVSGSYD------NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD--TTIRIWDLENGELMYT--  347 (464)
T ss_dssp             EETTEEEEEETT------SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT--SCEEEEETTTTEEEEE--
T ss_pred             CCCCEEEEEeCC------CeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCcEEEE--
Confidence            344455555532      458889988776332211111111111122255566666655  6799999988753322  


Q ss_pred             CCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeC
Q 045821          198 PNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQK  277 (352)
Q Consensus       198 ~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~  277 (352)
                      +........++.+++..++.|+.++     .+..||..+..-..... .........+..++.+++.|+ ++ .+.+||.
T Consensus       348 ~~~h~~~v~~~~~~~~~l~s~s~dg-----~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg-~i~iwd~  419 (464)
T 3v7d_B          348 LQGHTALVGLLRLSDKFLVSAAADG-----SIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-EN-QFNIYNL  419 (464)
T ss_dssp             ECCCSSCEEEEEECSSEEEEEETTS-----EEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TT-EEEEEET
T ss_pred             EeCCCCcEEEEEEcCCEEEEEeCCC-----cEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CC-eEEEEEC
Confidence            2222222234455677677766553     58888887654322111 111112223456777777777 44 8999999


Q ss_pred             CCCceEEccCCCCCcCCCCceEEEeCCEEEEEcCCce
Q 045821          278 ESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCS  314 (352)
Q Consensus       278 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~  314 (352)
                      .+++-......+.  .....++...++.+++.++.+.
T Consensus       420 ~~g~~~~~~~~~~--~~~v~~v~~~~~~l~~~~~~~g  454 (464)
T 3v7d_B          420 RSGKLVHANILKD--ADQIWSVNFKGKTLVAAVEKDG  454 (464)
T ss_dssp             TTCCEEESCTTTT--CSEEEEEEEETTEEEEEEEETT
T ss_pred             CCCcEEehhhccC--CCcEEEEEecCCEEEEEEEeCC
Confidence            9887654322222  1222334444666666665443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=97.02  E-value=0.079  Score=44.40  Aligned_cols=186  Identities=11%  Similarity=0.067  Sum_probs=93.8

Q ss_pred             ceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCC-CeeEecCCCCCccee
Q 045821           82 RVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASM-NTWTDAAPMSTARCY  160 (352)
Q Consensus        82 ~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t-~~W~~~~~~~~~r~~  160 (352)
                      ...++++|.  .++....+.....    .........++..+++++       ...++++|..+ ++...+.........
T Consensus        21 ~~~i~~~d~--~~~~~~~~~~~~~----~v~~~~~spdg~~l~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~~~~   87 (297)
T 2ojh_A           21 RSSIEIFNI--RTRKMRVVWQTPE----LFEAPNWSPDGKYLLLNS-------EGLLYRLSLAGDPSPEKVDTGFATICN   87 (297)
T ss_dssp             CEEEEEEET--TTTEEEEEEEESS----CCEEEEECTTSSEEEEEE-------TTEEEEEESSSCCSCEECCCTTCCCBC
T ss_pred             ceeEEEEeC--CCCceeeeccCCc----ceEeeEECCCCCEEEEEc-------CCeEEEEeCCCCCCceEeccccccccc
Confidence            345677788  7776665544321    111112222455555543       24789999998 776655433321111


Q ss_pred             eeeEEE-CCEEEEEeCCCC--CCceEEEeCCCCcEEEecCCCCcccceeEEEECCE-EEEEccCCCCCCceEEEEEeCCC
Q 045821          161 FPCGVL-NQKIYCIGGLGD--THSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGK-IYIRCSASAATSHVCALVYEPST  236 (352)
Q Consensus       161 ~~~~~~-~~~iyv~gG~~~--~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~-iyv~GG~~~~~~~~~i~~yd~~~  236 (352)
                      ..++.. +++.+++++...  ...++.+|..+..-+.+.....  .......-+++ |++.++..   ....++.+|..+
T Consensus        88 ~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~spdg~~l~~~~~~~---~~~~l~~~~~~~  162 (297)
T 2ojh_A           88 NDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLP--SYWHGWSPDGKSFTYCGIRD---QVFDIYSMDIDS  162 (297)
T ss_dssp             SCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSS--EEEEEECTTSSEEEEEEEET---TEEEEEEEETTT
T ss_pred             cceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCC--ccceEECCCCCEEEEEECCC---CceEEEEEECCC
Confidence            222222 555445544222  2778888888777555543221  11111222454 55443332   224678888877


Q ss_pred             CceeecCCCCCCCCCCcEEEECCE-EEEEecCCC-CeEEEEeCCCCceEEcc
Q 045821          237 DSWLHADANMASGWRGPAVVVDDA-LYVLDQSSG-TKLMMWQKESREWSPVG  286 (352)
Q Consensus       237 ~~W~~~~~~~~~~~~~~~~~~~~~-l~~~gg~~~-~~v~~yd~~~~~W~~~~  286 (352)
                      .....+..... .........+++ |++.+...+ ..++.++..++....+.
T Consensus       163 ~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~  213 (297)
T 2ojh_A          163 GVETRLTHGEG-RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT  213 (297)
T ss_dssp             CCEEECCCSSS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC
T ss_pred             CcceEcccCCC-ccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe
Confidence            77766543211 111111223554 444443233 57888887777766664

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.01  E-value=0.11  Score=44.68  Aligned_cols=188  Identities=11%  Similarity=0.009  Sum_probs=86.8

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecCC
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEP  198 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~  198 (352)
                      ++..++.|+.+      ..+..++.......................-++..++.|+.+  ..+.+||.....-......
T Consensus        97 dg~~l~s~~~d------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d--~~~~~~d~~~~~~~~~~~~  168 (340)
T 4aow_A           97 DGQFALSGSWD------GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD--KTIKLWNTLGVCKYTVQDE  168 (340)
T ss_dssp             TSSEEEEEETT------SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETT--SCEEEECTTSCEEEEECSS
T ss_pred             CCCEEEEEccc------ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCC--CeEEEEEeCCCceEEEEec
Confidence            45566666543      346777777765443322222111111122244555556544  5677888765543222211


Q ss_pred             CCcccceeEEE-E--CCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEE
Q 045821          199 NIFTEIEDSFV-M--DGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMW  275 (352)
Q Consensus       199 ~~~~~~~~~~~-~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~y  275 (352)
                      ........... .  .+.+++.|+.+.     .+..||..+.+-...-..........++..++++++.|+.++ .+.+|
T Consensus       169 ~~~~~v~~~~~~~~~~~~~~~s~~~d~-----~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg-~i~iw  242 (340)
T 4aow_A          169 SHSEWVSCVRFSPNSSNPIIVSCGWDK-----LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG-QAMLW  242 (340)
T ss_dssp             SCSSCEEEEEECSCSSSCEEEEEETTS-----CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTC-EEEEE
T ss_pred             cccCcccceEEccCCCCcEEEEEcCCC-----EEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCC-eEEEE
Confidence            11111111111 1  234555555442     477788877654432111111101111223677788887766 89999


Q ss_pred             eCCCCceEEccCCCCCcCCCCceEEEe-CCEEEEEcCCceEEEEEcCCcc
Q 045821          276 QKESREWSPVGRLSTLLTRPPCKLVAI-GKTIFVIGKGCSAVVIDVGNIG  324 (352)
Q Consensus       276 d~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~i~v~gG~~~~~~~d~~~~~  324 (352)
                      |..+..-...-....    ...++... ++.++..+....+.+||.+...
T Consensus       243 d~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~  288 (340)
T 4aow_A          243 DLNEGKHLYTLDGGD----IINALCFSPNRYWLCAATGPSIKIWDLEGKI  288 (340)
T ss_dssp             ETTTTEEEEEEECSS----CEEEEEECSSSSEEEEEETTEEEEEETTTTE
T ss_pred             EeccCceeeeecCCc----eEEeeecCCCCceeeccCCCEEEEEECCCCe
Confidence            988754322211111    11122222 3344443333356678876543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.00  E-value=0.15  Score=44.37  Aligned_cols=230  Identities=10%  Similarity=0.097  Sum_probs=118.2

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECC-CC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDAS-MN  146 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~-t~  146 (352)
                      .+.+|++|..   +  .++.-+-  ...+|+.+...... .......+....+.+|+.|..       ..+++ ... -.
T Consensus        46 ~~~~~~~G~~---g--~i~~s~D--gG~tW~~~~~~~~~-~~~~~~~i~~~~~~~~~~g~~-------g~i~~-S~DgG~  109 (327)
T 2xbg_A           46 RHHGWLVGVN---A--TLMETRD--GGQTWEPRTLVLDH-SDYRFNSVSFQGNEGWIVGEP-------PIMLH-TTDGGQ  109 (327)
T ss_dssp             SSCEEEEETT---T--EEEEESS--TTSSCEECCCCCSC-CCCEEEEEEEETTEEEEEEET-------TEEEE-ESSTTS
T ss_pred             CCcEEEEcCC---C--eEEEeCC--CCCCCeECCCCCCC-CCccEEEEEecCCeEEEEECC-------CeEEE-ECCCCC
Confidence            5667776431   1  1333333  46799988642110 112234445556788887521       23443 333 45


Q ss_pred             eeEecCCCC-CcceeeeeEE-ECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE-CCEEEEEccCCCC
Q 045821          147 TWTDAAPMS-TARCYFPCGV-LNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM-DGKIYIRCSASAA  223 (352)
Q Consensus       147 ~W~~~~~~~-~~r~~~~~~~-~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~iyv~GG~~~~  223 (352)
                      +|+.+.... .+.....++. -++.+|+.+..   ..+++-+-.-.+|+.+...... ....++.. ++.+|++| ..+ 
T Consensus       110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---g~v~~S~DgG~tW~~~~~~~~~-~~~~~~~~~~~~~~~~g-~~G-  183 (327)
T 2xbg_A          110 SWSQIPLDPKLPGSPRLIKALGNGSAEMITNV---GAIYRTKDSGKNWQALVQEAIG-VMRNLNRSPSGEYVAVS-SRG-  183 (327)
T ss_dssp             SCEECCCCTTCSSCEEEEEEEETTEEEEEETT---CCEEEESSTTSSEEEEECSCCC-CEEEEEECTTSCEEEEE-TTS-
T ss_pred             CceECccccCCCCCeEEEEEECCCCEEEEeCC---ccEEEEcCCCCCCEEeecCCCc-ceEEEEEcCCCcEEEEE-CCC-
Confidence            799886432 2222233333 36788888752   2344444445689998753322 22223222 56777764 221 


Q ss_pred             CCceEEEEE-eCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCC-CCceEEccCC--CCCcCCCCceE
Q 045821          224 TSHVCALVY-EPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKE-SREWSPVGRL--STLLTRPPCKL  299 (352)
Q Consensus       224 ~~~~~i~~y-d~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~-~~~W~~~~~~--~~~~~~~~~~~  299 (352)
                          .++.- |....+|+.+...........++..++.+|+.+.. + .+++.+.+ ..+|+.+...  +.  .....++
T Consensus       184 ----~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~-G-~~~~s~~D~G~tW~~~~~~~~~~--~~~~~~v  255 (327)
T 2xbg_A          184 ----SFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNG-G-KIAFSDPDNSENWGELLSPLRRN--SVGFLDL  255 (327)
T ss_dssp             ----SEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEETT-T-EEEEEETTEEEEECCCBCTTSSC--CSCEEEE
T ss_pred             ----cEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeCC-c-eEEEecCCCCCeeEeccCCcccC--CcceEEE
Confidence                24444 33367899885433222222222346778877642 3 56666433 6789987532  22  1122333


Q ss_pred             EEe-CCEEEEEcCCceEEEEEcCCccccc
Q 045821          300 VAI-GKTIFVIGKGCSAVVIDVGNIGNIG  327 (352)
Q Consensus       300 ~~~-~~~i~v~gG~~~~~~~d~~~~~w~~  327 (352)
                      +.. ++.+|+.|+...++.-.-.-.+|..
T Consensus       256 ~~~~~~~~~~~g~~g~i~~S~DgG~tW~~  284 (327)
T 2xbg_A          256 AYRTPNEVWLAGGAGALLCSQDGGQTWQQ  284 (327)
T ss_dssp             EESSSSCEEEEESTTCEEEESSTTSSCEE
T ss_pred             EecCCCEEEEEeCCCeEEEeCCCCcccEE
Confidence            322 5789988875445443333457864

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=96.97  E-value=0.069  Score=46.26  Aligned_cols=147  Identities=12%  Similarity=0.079  Sum_probs=73.0

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-CC-EEEEEeCCCCCCCCCCeEEEEECCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-GK-NAYLLGGCGWSEDATSEVYCYDASM  145 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~d~~t  145 (352)
                      ++.+|+.++.    .-.++++|+  .+++....-..+.   ......++.. ++ .+|+.+.      ....+++||+.+
T Consensus        10 ~~~~~v~~~~----~~~v~~~d~--~~~~~~~~~~~~~---~~~~~~~~~s~dg~~~~v~~~------~~~~i~~~d~~t   74 (349)
T 1jmx_B           10 GHEYMIVTNY----PNNLHVVDV--ASDTVYKSCVMPD---KFGPGTAMMAPDNRTAYVLNN------HYGDIYGIDLDT   74 (349)
T ss_dssp             TCEEEEEEET----TTEEEEEET--TTTEEEEEEECSS---CCSSCEEEECTTSSEEEEEET------TTTEEEEEETTT
T ss_pred             CCEEEEEeCC----CCeEEEEEC--CCCcEEEEEecCC---CCCCceeEECCCCCEEEEEeC------CCCcEEEEeCCC
Confidence            6778887664    235667798  7776543333331   0011223332 34 5777753      235789999998


Q ss_pred             CeeEecCCCCC-----cceeeeeEEE-CC-EEEEEeCC--------C-CCCceEEEeCCCCcE----EEecCCCCcccce
Q 045821          146 NTWTDAAPMST-----ARCYFPCGVL-NQ-KIYCIGGL--------G-DTHSWDVYDPRTNNW----KLHTEPNIFTEIE  205 (352)
Q Consensus       146 ~~W~~~~~~~~-----~r~~~~~~~~-~~-~iyv~gG~--------~-~~~~v~~yd~~t~~W----~~~~~~~~~~~~~  205 (352)
                      ++-...-..+.     ......++.. ++ .+|+.+..        . ....+.+||..+++-    .... .+. ....
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~-~~~~  152 (349)
T 1jmx_B           75 CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPR-QVYL  152 (349)
T ss_dssp             TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCS-SCCC
T ss_pred             CcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCC-cccc
Confidence            87543211211     1111222332 34 56665521        0 016788999887431    1111 111 1111


Q ss_pred             eEEEECCEEEEEccCCCCCCceEEEEEeCCCCce
Q 045821          206 DSFVMDGKIYIRCSASAATSHVCALVYEPSTDSW  239 (352)
Q Consensus       206 ~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W  239 (352)
                      .+..-+|++|+.+ .       .+..+|..+.+-
T Consensus       153 ~~~s~dg~l~~~~-~-------~i~~~d~~~~~~  178 (349)
T 1jmx_B          153 MRAADDGSLYVAG-P-------DIYKMDVKTGKY  178 (349)
T ss_dssp             EEECTTSCEEEES-S-------SEEEECTTTCCE
T ss_pred             eeECCCCcEEEcc-C-------cEEEEeCCCCce
Confidence            1223367777742 2       277888776654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.96  E-value=0.24  Score=47.93  Aligned_cols=117  Identities=18%  Similarity=0.186  Sum_probs=73.2

Q ss_pred             EEECCEEEEEeCCCCCCCCCCeEEEEECCCCe--eEecCCCCCc--------ceeeeeEEECCEEEEEeCCCCCCceEEE
Q 045821          116 EVLGKNAYLLGGCGWSEDATSEVYCYDASMNT--WTDAAPMSTA--------RCYFPCGVLNQKIYCIGGLGDTHSWDVY  185 (352)
Q Consensus       116 ~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~gG~~~~~~v~~y  185 (352)
                      ++.++.||+...       ...++.+|..|++  |+.-...+..        ......++.+++||+....   ..+..+
T Consensus        74 ~v~~g~vyv~~~-------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~d---g~l~al  143 (677)
T 1kb0_A           74 VVVDGIMYVSAS-------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWD---GRLIAL  143 (677)
T ss_dssp             EEETTEEEEECG-------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTT---SEEEEE
T ss_pred             EEECCEEEEECC-------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCC---CEEEEE
Confidence            567999998854       3578999999886  8765443211        1123456678999986532   578999


Q ss_pred             eCCCCc--EEEecC-C-CC-cccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCc--eeec
Q 045821          186 DPRTNN--WKLHTE-P-NI-FTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDS--WLHA  242 (352)
Q Consensus       186 d~~t~~--W~~~~~-~-~~-~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~--W~~~  242 (352)
                      |..|++  |+.-.. . .. .......++.++.+|+..+.........+..||..+++  |+.-
T Consensus       144 D~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~  207 (677)
T 1kb0_A          144 DAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF  207 (677)
T ss_dssp             ETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             ECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence            998874  876432 1 11 11122345678898886433221223479999987765  8754

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=96.95  E-value=0.15  Score=47.93  Aligned_cols=274  Identities=9%  Similarity=0.026  Sum_probs=129.3

Q ss_pred             CCCcHHHHHHhhccC----ccccchhhhhhhhhhcccccChhhHHHHhhCCC-CCCEEEEEEecCCCCceeEEEecCCCC
Q 045821           19 SGLPDDIALFCLARV----PRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNL-DETWIYAFCRDNKLERVCCYVLDPNST   93 (352)
Q Consensus        19 ~~lp~dl~~~il~r~----p~~~~~~l~~v~k~W~~l~~s~~~~~~~~~~~~-~~~~l~~~gg~~~~~~~~~~~~d~~~~   93 (352)
                      ..|.++=+..|.+.+    +......+..+.+.|..+......+. +..+.. .++.+|+.++.    .-.+.++|.  .
T Consensus        95 ~~ls~~ei~~l~~yl~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~-~~~~~~~p~~~~~vs~~~----d~~V~v~D~--~  167 (543)
T 1nir_A           95 GELSKEQITLMAKYIQHTPPQPPEWGMPEMRESWKVLVKPEDRPK-KQLNDLDLPNLFSVTLRD----AGQIALVDG--D  167 (543)
T ss_dssp             TSSCHHHHHHHHHHTTSCCCBCCCCCHHHHHHHCEESSCGGGSCS-SCCSCCCGGGEEEEEEGG----GTEEEEEET--T
T ss_pred             cCCCHHHHHHHHHHHHhcccCCCccchhhhhhhhccccccccCCc-ccccccCCCCEEEEEEcC----CCeEEEEEC--C
Confidence            467776444444433    22222344556677766542221111 111222 26788877653    224455688  7


Q ss_pred             CCCeeEeccCCCcccCCcceEEEEE-C-CEEEEEeCCCCCCCCCCeEEEEEC--CCCeeEecCCCCCcceeeeeEEE---
Q 045821           94 RRSWKMIHELPARTLRRKGMGFEVL-G-KNAYLLGGCGWSEDATSEVYCYDA--SMNTWTDAAPMSTARCYFPCGVL---  166 (352)
Q Consensus        94 ~~~w~~~~~~~~~~~~~~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~d~--~t~~W~~~~~~~~~r~~~~~~~~---  166 (352)
                      ++.....-...     ..-+.++.. + ..+|+.+.       ...+.+||+  .+.+-  +..++.......++..   
T Consensus       168 t~~~~~~i~~g-----~~~~~v~~spdg~~l~v~~~-------d~~V~v~D~~~~t~~~--~~~i~~g~~p~~va~sp~~  233 (543)
T 1nir_A          168 SKKIVKVIDTG-----YAVHISRMSASGRYLLVIGR-------DARIDMIDLWAKEPTK--VAEIKIGIEARSVESSKFK  233 (543)
T ss_dssp             TCCEEEEEECS-----TTEEEEEECTTSCEEEEEET-------TSEEEEEETTSSSCEE--EEEEECCSEEEEEEECCST
T ss_pred             CceEEEEEecC-----cccceEEECCCCCEEEEECC-------CCeEEEEECcCCCCcE--EEEEecCCCcceEEeCCCc
Confidence            76543222221     112333333 3 45776653       167999999  66543  2222222222222332   


Q ss_pred             --CC-EEEEEeCCCCCCceEEEeCCCCcEEEe-cCCC--C-------cccceeEEE-E-CCEEEEEccCCCCCCceEEEE
Q 045821          167 --NQ-KIYCIGGLGDTHSWDVYDPRTNNWKLH-TEPN--I-------FTEIEDSFV-M-DGKIYIRCSASAATSHVCALV  231 (352)
Q Consensus       167 --~~-~iyv~gG~~~~~~v~~yd~~t~~W~~~-~~~~--~-------~~~~~~~~~-~-~g~iyv~GG~~~~~~~~~i~~  231 (352)
                        ++ .+|+....+  ..+.++|..+.+-... +...  .       ...-.+++. . ++.+|+....     ...++.
T Consensus       234 ~~dg~~l~v~~~~~--~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~-----~g~i~v  306 (543)
T 1nir_A          234 GYEDRYTIAGAYWP--PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE-----TGKVLL  306 (543)
T ss_dssp             TCTTTEEEEEEEES--SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT-----TTEEEE
T ss_pred             CCCCCEEEEEEccC--CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC-----CCeEEE
Confidence              44 566654222  6788999888754332 2111  0       001111222 2 3455555321     236788


Q ss_pred             EeCCCCcee---ecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceEEccCCCC-CcCCCCceEEEe-CCEE
Q 045821          232 YEPSTDSWL---HADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLST-LLTRPPCKLVAI-GKTI  306 (352)
Q Consensus       232 yd~~~~~W~---~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~-~~~~~~~~~~~~-~~~i  306 (352)
                      +|..+.+-.   .++.  ...-+..++.-+++.+++++...+.|.++|.++++-...-.... +.......++.. ++.+
T Consensus       307 vd~~~~~~l~~~~i~~--~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~  384 (543)
T 1nir_A          307 VNYKDIDNLTVTSIGA--APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPV  384 (543)
T ss_dssp             EECTTSSSCEEEEEEC--CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEE
T ss_pred             EEecCCCcceeEEecc--CcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccE
Confidence            887664321   2221  11112223334666444444333489999999887554322111 011122233322 3778


Q ss_pred             EEEc--CCceEEEEEcCC
Q 045821          307 FVIG--KGCSAVVIDVGN  322 (352)
Q Consensus       307 ~v~g--G~~~~~~~d~~~  322 (352)
                      |+.+  |...+.++|+..
T Consensus       385 ~~s~~~~d~~V~v~d~~~  402 (543)
T 1nir_A          385 WSTSHLGDGSISLIGTDP  402 (543)
T ss_dssp             EEEEBSSSSEEEEEECCT
T ss_pred             EEeccCCCceEEEEEeCC
Confidence            8876  345677899876

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=96.95  E-value=0.11  Score=45.59  Aligned_cols=183  Identities=6%  Similarity=-0.036  Sum_probs=89.7

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEEC-CEEEEEeCCCCCCceEEEeCCCCcEEEecC
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLN-QKIYCIGGLGDTHSWDVYDPRTNNWKLHTE  197 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~-~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~  197 (352)
                      ++..++.|+.+      ..+.+||..+++-...-.-...........-+ ..+++.|+.+  ..+.+||..+.+-...-.
T Consensus       138 dg~~l~sgs~d------~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D--~~v~iwd~~~~~~~~~~~  209 (344)
T 4gqb_B          138 SGTQAVSGSKD------ICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSED--NRILLWDTRCPKPASQIG  209 (344)
T ss_dssp             TSSEEEEEETT------SCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETT--SCEEEEETTSSSCEEECC
T ss_pred             CCCEEEEEeCC------CeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccc--cccccccccccceeeeee
Confidence            55666666543      45788999887633221111111111111123 3577777765  678999998876433211


Q ss_pred             CCCcccce-eEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCcee-ecCCCCCCCCCCcEEEE--CC-EEEEEecCCCC
Q 045821          198 PNIFTEIE-DSFVM--DGKIYIRCSASAATSHVCALVYEPSTDSWL-HADANMASGWRGPAVVV--DD-ALYVLDQSSGT  270 (352)
Q Consensus       198 ~~~~~~~~-~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~-~~~~~~~~~~~~~~~~~--~~-~l~~~gg~~~~  270 (352)
                      ........ .++..  ++++++.|+.++     .+..||..+.+-. .+..   +...-..+.+  ++ ++++.|+.++ 
T Consensus       210 ~~~~~~~~~~~~~~p~~~~~l~sg~~dg-----~v~~wd~~~~~~~~~~~~---h~~~v~~v~fsp~g~~~lasgs~D~-  280 (344)
T 4gqb_B          210 CSAPGYLPTSLAWHPQQSEVFVFGDENG-----TVSLVDTKSTSCVLSSAV---HSQCVTGLVFSPHSVPFLASLSEDC-  280 (344)
T ss_dssp             ----CCCEEEEEECSSCTTEEEEEETTS-----EEEEEESCC--CCEEEEC---CSSCEEEEEECSSSSCCEEEEETTS-
T ss_pred             cceeeccceeeeecCCCCcceEEeccCC-----cEEEEECCCCcEEEEEcC---CCCCEEEEEEccCCCeEEEEEeCCC-
Confidence            11111111 22222  567778765543     5778888765321 1111   1111112222  34 5666676665 


Q ss_pred             eEEEEeCCCCceEEccCCCCCcCCCCceEEE--eCCEEEEEcCCce-EEEEEcCC
Q 045821          271 KLMMWQKESREWSPVGRLSTLLTRPPCKLVA--IGKTIFVIGKGCS-AVVIDVGN  322 (352)
Q Consensus       271 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~--~~~~i~v~gG~~~-~~~~d~~~  322 (352)
                      .|.+||..+++-.....-    ...-.+++.  .+..+++-||.+. +.++++..
T Consensus       281 ~i~vwd~~~~~~~~~~~H----~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          281 SLAVLDSSLSELFRSQAH----RDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             CEEEECTTCCEEEEECCC----SSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred             eEEEEECCCCcEEEEcCC----CCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence            899999988765443211    111122222  2445666666654 44566654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=96.94  E-value=0.073  Score=45.23  Aligned_cols=182  Identities=7%  Similarity=-0.016  Sum_probs=96.4

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCe--eEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCC--cEE
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNT--WTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTN--NWK  193 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~--~W~  193 (352)
                      .+++++.|.      ....+.++|+.+++  |+.-..-.  ...+.+... ++++++.+.    ..+..||+ ++  .|+
T Consensus         4 ~~~~lv~~~------~~~~v~~~d~~tG~~~w~~~~~~~--~~~~~~~~~pdG~ilvs~~----~~V~~~d~-~G~~~W~   70 (276)
T 3no2_A            4 PQHLLVGGS------GWNKIAIINKDTKEIVWEYPLEKG--WECNSVAATKAGEILFSYS----KGAKMITR-DGRELWN   70 (276)
T ss_dssp             CCEEEEECT------TCSEEEEEETTTTEEEEEEECCTT--CCCCEEEECTTSCEEEECB----SEEEEECT-TSCEEEE
T ss_pred             CCcEEEeeC------CCCEEEEEECCCCeEEEEeCCCcc--CCCcCeEECCCCCEEEeCC----CCEEEECC-CCCEEEE
Confidence            356666653      24678889998886  66433211  122333333 788888433    67999999 44  476


Q ss_pred             EecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCC-ceeec-CCC---CCCCCCCcEEEECCEEEEEecCC
Q 045821          194 LHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTD-SWLHA-DAN---MASGWRGPAVVVDDALYVLDQSS  268 (352)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~-~W~~~-~~~---~~~~~~~~~~~~~~~l~~~gg~~  268 (352)
                      .-.. ...........-+|++++.....    ...++.+|+... .|+.- ...   ............++.+++.....
T Consensus        71 ~~~~-~~~~~~~~~~~~dG~~lv~~~~~----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~  145 (276)
T 3no2_A           71 IAAP-AGCEMQTARILPDGNALVAWCGH----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFAT  145 (276)
T ss_dssp             EECC-TTCEEEEEEECTTSCEEEEEEST----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTT
T ss_pred             EcCC-CCccccccEECCCCCEEEEecCC----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCC
Confidence            5431 11111122333477877774331    236778887543 24422 111   00111223344567776665444


Q ss_pred             CCeEEEEeCCCCc-eEEccCCCCCcCCCCceEEEeCCEEEEEcCCc-eEEEEEcCCcc
Q 045821          269 GTKLMMWQKESRE-WSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGC-SAVVIDVGNIG  324 (352)
Q Consensus       269 ~~~v~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~-~~~~~d~~~~~  324 (352)
                      + .+..||++.+. |+.-...     .........++.+++.+... .+..+|+++..
T Consensus       146 ~-~v~~~d~~G~~~w~~~~~~-----~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~  197 (276)
T 3no2_A          146 S-EVREIAPNGQLLNSVKLSG-----TPFSSAFLDNGDCLVACGDAHCFVQLNLESNR  197 (276)
T ss_dssp             T-EEEEECTTSCEEEEEECSS-----CCCEEEECTTSCEEEECBTTSEEEEECTTTCC
T ss_pred             C-EEEEECCCCCEEEEEECCC-----CccceeEcCCCCEEEEeCCCCeEEEEeCcCCc
Confidence            4 89999998443 6543321     11123333467777776544 56678987433

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=96.93  E-value=0.003  Score=56.04  Aligned_cols=149  Identities=13%  Similarity=0.131  Sum_probs=73.3

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCc-EEEe
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNN-WKLH  195 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~-W~~~  195 (352)
                      ++.+++.|+.      ...+.+||..++.|..+..+......-..+.+  ++..++.|+.+  ..+.+||..+.. |...
T Consensus        22 ~g~~l~~~~~------d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d--~~v~vwd~~~~~~~~~~   93 (377)
T 3dwl_C           22 QRTEFVTTTA------TNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD--RNAYVYEKRPDGTWKQT   93 (377)
T ss_dssp             SSSEEECCCS------SSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT--SSEEEC------CCCCE
T ss_pred             CCCEEEEecC------CCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC--CeEEEEEcCCCCceeee
Confidence            4555555543      24577889888888777665532222222222  46666777655  678999998876 5443


Q ss_pred             cCCCCcccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCc-eeecCCCCC-CCCCCcEEE--ECCEEEEEecCCC
Q 045821          196 TEPNIFTEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTDS-WLHADANMA-SGWRGPAVV--VDDALYVLDQSSG  269 (352)
Q Consensus       196 ~~~~~~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~-W~~~~~~~~-~~~~~~~~~--~~~~l~~~gg~~~  269 (352)
                      ............+.+  ++++++.|+.++     .+..||..+.+ |..+..... +......+.  -++++++.|+.++
T Consensus        94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~  168 (377)
T 3dwl_C           94 LVLLRLNRAATFVRWSPNEDKFAVGSGAR-----VISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR  168 (377)
T ss_dssp             EECCCCSSCEEEEECCTTSSCCEEEESSS-----CEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSS
T ss_pred             eEecccCCceEEEEECCCCCEEEEEecCC-----eEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCC
Confidence            322222221222222  566666665542     46777776654 332221111 111111222  2667777777766


Q ss_pred             CeEEEEeCCCCc
Q 045821          270 TKLMMWQKESRE  281 (352)
Q Consensus       270 ~~v~~yd~~~~~  281 (352)
                       .+.+||..+..
T Consensus       169 -~i~iwd~~~~~  179 (377)
T 3dwl_C          169 -KAYVLSAYVRD  179 (377)
T ss_dssp             -CEEEEEECCSS
T ss_pred             -EEEEEEEEecc
Confidence             89999986443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.93  E-value=0.067  Score=52.83  Aligned_cols=213  Identities=5%  Similarity=-0.001  Sum_probs=114.7

Q ss_pred             EEEecCCCCCCCeeEeccCCCc----ccCCcceEEEEE-CCE-EEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCC--
Q 045821           85 CYVLDPNSTRRSWKMIHELPAR----TLRRKGMGFEVL-GKN-AYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMST--  156 (352)
Q Consensus        85 ~~~~d~~~~~~~w~~~~~~~~~----~~~~~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~--  156 (352)
                      +..||+  .++.+..+...+..    .....-.+++.- ++. |++- ..      ...+.+||+.++++..+.....  
T Consensus       379 l~~~~~--~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWig-t~------~~Gl~~~d~~~~~~~~~~~~~~~l  449 (795)
T 4a2l_A          379 LNLYNP--ITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIG-TH------AGGLSILHRNSGQVENFNQRNSQL  449 (795)
T ss_dssp             EEEECT--TTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEE-ET------TTEEEEEETTTCCEEEECTTTSCC
T ss_pred             eEEEcC--CCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEE-eC------cCceeEEeCCCCcEEEeecCCCCc
Confidence            456677  77777766532200    011111223332 455 6663 21      2457899999988777653211  


Q ss_pred             c-ceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCC--Cc--ccceeEEE--ECCEEEEEccCCCCCCceE
Q 045821          157 A-RCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPN--IF--TEIEDSFV--MDGKIYIRCSASAATSHVC  228 (352)
Q Consensus       157 ~-r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~--~~--~~~~~~~~--~~g~iyv~GG~~~~~~~~~  228 (352)
                      + ..-.+.+.. ++.|++...    ..+.+||+.+++|+......  ..  .....+..  -+|+|++... .      .
T Consensus       450 ~~~~v~~i~~d~~g~lwigt~----~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~------G  518 (795)
T 4a2l_A          450 VNENVYAILPDGEGNLWLGTL----SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E------G  518 (795)
T ss_dssp             SCSCEEEEEECSSSCEEEEES----SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S------C
T ss_pred             CCCeeEEEEECCCCCEEEEec----CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C------c
Confidence            1 111222222 467777654    45899999999998775321  11  11111222  2678888642 2      3


Q ss_pred             EEEEeCCCCceeecCCC-CCCCCC-C--cEEE--ECCEEEEEecCCCCeEEEEeCCCCceEEcc---CCCCCcCCCCceE
Q 045821          229 ALVYEPSTDSWLHADAN-MASGWR-G--PAVV--VDDALYVLDQSSGTKLMMWQKESREWSPVG---RLSTLLTRPPCKL  299 (352)
Q Consensus       229 i~~yd~~~~~W~~~~~~-~~~~~~-~--~~~~--~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~---~~~~~~~~~~~~~  299 (352)
                      +.+||+.++++ ..... ...... .  ..+.  .+|.|++-.. .  .+.+||++++++....   .+|..   ...++
T Consensus       519 l~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~--Gl~~~d~~~~~~~~~~~~~gl~~~---~i~~i  591 (795)
T 4a2l_A          519 LSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E--GFYCFNEKDKQIKRYNTTNGLPNN---VVYGI  591 (795)
T ss_dssp             EEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S--CEEEEETTTTEEEEECGGGTCSCS---CEEEE
T ss_pred             eEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C--CceeECCCCCcEEEeCCCCCCchh---heEEE
Confidence            88899988888 43211 001111 1  1222  2567776443 2  5999999999988764   23331   22333


Q ss_pred             EEe-CCEEEEEcCCceEEEEEcCCccc
Q 045821          300 VAI-GKTIFVIGKGCSAVVIDVGNIGN  325 (352)
Q Consensus       300 ~~~-~~~i~v~gG~~~~~~~d~~~~~w  325 (352)
                      +.- ++.|++-+ ......||+++..+
T Consensus       592 ~~d~~g~lWi~t-~~Gl~~~~~~~~~~  617 (795)
T 4a2l_A          592 LEDSFGRLWLST-NRGISCFNPETEKF  617 (795)
T ss_dssp             EECTTSCEEEEE-TTEEEEEETTTTEE
T ss_pred             EECCCCCEEEEc-CCceEEEcCCCCcE
Confidence            332 56777766 45677788876554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=96.92  E-value=0.16  Score=43.21  Aligned_cols=225  Identities=7%  Similarity=-0.031  Sum_probs=116.7

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEE-ECCEEEEEeCCCCCCCCCCeEEEEECCCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEV-LGKNAYLLGGCGWSEDATSEVYCYDASMN  146 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~t~  146 (352)
                      ++.||+++..    .-.++.||+  .++ ...+....     ..-.+++. .++.+|+...      ....+.+||+.++
T Consensus        39 g~~l~~~~~~----~~~i~~~~~--~~~-~~~~~~~~-----~~~~~l~~~~dg~l~v~~~------~~~~i~~~d~~~g  100 (296)
T 3e5z_A           39 RSAVIFSDVR----QNRTWAWSD--DGQ-LSPEMHPS-----HHQNGHCLNKQGHLIACSH------GLRRLERQREPGG  100 (296)
T ss_dssp             GTEEEEEEGG----GTEEEEEET--TSC-EEEEESSC-----SSEEEEEECTTCCEEEEET------TTTEEEEECSTTC
T ss_pred             CCEEEEEeCC----CCEEEEEEC--CCC-eEEEECCC-----CCcceeeECCCCcEEEEec------CCCeEEEEcCCCC
Confidence            3447777543    235778898  776 55554322     11123333 2567877642      1356899999888


Q ss_pred             eeEecCCCCCc-c-ee-eeeEEE-CCEEEEE----eCC----------CC-CCceEEEeCCCCcEEEecCCCCcccceeE
Q 045821          147 TWTDAAPMSTA-R-CY-FPCGVL-NQKIYCI----GGL----------GD-THSWDVYDPRTNNWKLHTEPNIFTEIEDS  207 (352)
Q Consensus       147 ~W~~~~~~~~~-r-~~-~~~~~~-~~~iyv~----gG~----------~~-~~~v~~yd~~t~~W~~~~~~~~~~~~~~~  207 (352)
                      +...+...... . .. ..++.- +|++|+.    |..          .. ...++.||+. ++.+.+.....  .....
T Consensus       101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~--~~~gi  177 (296)
T 3e5z_A          101 EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRV--KPNGL  177 (296)
T ss_dssp             CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCS--SEEEE
T ss_pred             cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCC--CCccE
Confidence            87665432111 1 11 122222 6788886    321          00 1478899987 55555432111  11122


Q ss_pred             E-EECCEEEEEccCCCCCCceEEEEEeCC-CCce-e--ecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCce
Q 045821          208 F-VMDGKIYIRCSASAATSHVCALVYEPS-TDSW-L--HADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREW  282 (352)
Q Consensus       208 ~-~~~g~iyv~GG~~~~~~~~~i~~yd~~-~~~W-~--~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W  282 (352)
                      + .-+|++++.....     ..+++||.. +++. .  .+-......-.+.++.-+|.||+..   +..|.+||++.+..
T Consensus       178 ~~s~dg~~lv~~~~~-----~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~---~~~v~~~~~~g~~~  249 (296)
T 3e5z_A          178 AFLPSGNLLVSDTGD-----NATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA---GDGVHVLTPDGDEL  249 (296)
T ss_dssp             EECTTSCEEEEETTT-----TEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---TTEEEEECTTSCEE
T ss_pred             EECCCCCEEEEeCCC-----CeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---CCeEEEECCCCCEE
Confidence            2 2367666543221     368888875 4554 1  1111111111122233477888877   23899999986655


Q ss_pred             EEccCCCCCcCCCCceEEE--eC-CEEEEEcCCceEEEEEcCCccccc
Q 045821          283 SPVGRLSTLLTRPPCKLVA--IG-KTIFVIGKGCSAVVIDVGNIGNIG  327 (352)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~--~~-~~i~v~gG~~~~~~~d~~~~~w~~  327 (352)
                      ..+. .+..    ..+++.  .+ +.||+-. ....+-+++++..-++
T Consensus       250 ~~~~-~~~~----~~~~~f~~~d~~~L~v~t-~~~l~~~~~~~~~~~~  291 (296)
T 3e5z_A          250 GRVL-TPQT----TSNLCFGGPEGRTLYMTV-STEFWSIETNVRGLEH  291 (296)
T ss_dssp             EEEE-CSSC----CCEEEEESTTSCEEEEEE-TTEEEEEECSCCBCCC
T ss_pred             EEEE-CCCC----ceeEEEECCCCCEEEEEc-CCeEEEEEcccccccc
Confidence            5543 2221    122222  23 3577665 4567778888776543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=96.91  E-value=0.049  Score=48.55  Aligned_cols=144  Identities=10%  Similarity=0.102  Sum_probs=71.3

Q ss_pred             CEEEEEeCCCCCCCCCCeEEEEECCCCeeE-ecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecC
Q 045821          120 KNAYLLGGCGWSEDATSEVYCYDASMNTWT-DAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTE  197 (352)
Q Consensus       120 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~-~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~  197 (352)
                      +..++.|+.      ...+.+||..+.+-. .+..... .. ..++.. ++..++.++.+  ..+.+||..+..-...-.
T Consensus       217 ~~~~~~~~~------~g~i~~~d~~~~~~~~~~~~~~~-~i-~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~  286 (425)
T 1r5m_A          217 DDKFVIPGP------KGAIFVYQITEKTPTGKLIGHHG-PI-SVLEFNDTNKLLLSASDD--GTLRIWHGGNGNSQNCFY  286 (425)
T ss_dssp             TTEEEEECG------GGCEEEEETTCSSCSEEECCCSS-CE-EEEEEETTTTEEEEEETT--SCEEEECSSSBSCSEEEC
T ss_pred             CCEEEEEcC------CCeEEEEEcCCCceeeeeccCCC-ce-EEEEECCCCCEEEEEcCC--CEEEEEECCCCccceEec
Confidence            334555553      346888998876422 1111111 11 122222 55566666644  678899988754322111


Q ss_pred             CCCcccceeEEEE-CCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEe
Q 045821          198 PNIFTEIEDSFVM-DGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQ  276 (352)
Q Consensus       198 ~~~~~~~~~~~~~-~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd  276 (352)
                      ... .....+... ++ +++.|+.++     .+..||..+.+-...-..............++++++.++.++ .+.+||
T Consensus       287 ~~~-~~i~~~~~~~~~-~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~i~~  358 (425)
T 1r5m_A          287 GHS-QSIVSASWVGDD-KVISCSMDG-----SVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDG-QVNVYD  358 (425)
T ss_dssp             CCS-SCEEEEEEETTT-EEEEEETTS-----EEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTS-CEEEEE
T ss_pred             CCC-ccEEEEEECCCC-EEEEEeCCC-----cEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCC-eEEEEE
Confidence            111 111222333 55 555555442     688888876653322111111111111223567777777665 899999


Q ss_pred             CCCCc
Q 045821          277 KESRE  281 (352)
Q Consensus       277 ~~~~~  281 (352)
                      ..+..
T Consensus       359 ~~~~~  363 (425)
T 1r5m_A          359 LKKLN  363 (425)
T ss_dssp             CHHHH
T ss_pred             CCCCc
Confidence            87654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.89  E-value=0.22  Score=44.42  Aligned_cols=217  Identities=12%  Similarity=0.066  Sum_probs=105.0

Q ss_pred             eEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeee
Q 045821           84 CCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFP  162 (352)
Q Consensus        84 ~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~  162 (352)
                      .+.++|.  .++.........   ....-.+++.. ++..++.|+.+      ..+.+||..+++....-....  ....
T Consensus       114 ~v~lw~~--~~~~~~~~~~~~---~~~~v~~v~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~--~~v~  180 (401)
T 4aez_A          114 NVYVWNA--DSGSVSALAETD---ESTYVASVKWSHDGSFLSVGLGN------GLVDIYDVESQTKLRTMAGHQ--ARVG  180 (401)
T ss_dssp             EEEEEET--TTCCEEEEEECC---TTCCEEEEEECTTSSEEEEEETT------SCEEEEETTTCCEEEEECCCS--SCEE
T ss_pred             eEEEeeC--CCCcEeEeeecC---CCCCEEEEEECCCCCEEEEECCC------CeEEEEECcCCeEEEEecCCC--CceE
Confidence            3566687  777765554442   11111222222 45566666543      458889988775332211111  1112


Q ss_pred             eEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCcee
Q 045821          163 CGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTDSWL  240 (352)
Q Consensus       163 ~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~  240 (352)
                      ...+++.+++.|+.+  ..+.+||..+..-.... ..........+.+  ++.+++.|+.++     .+..||..+.+-.
T Consensus       181 ~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~~  252 (401)
T 4aez_A          181 CLSWNRHVLSSGSRS--GAIHHHDVRIANHQIGT-LQGHSSEVCGLAWRSDGLQLASGGNDN-----VVQIWDARSSIPK  252 (401)
T ss_dssp             EEEEETTEEEEEETT--SEEEEEETTSSSCEEEE-EECCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTCSSEE
T ss_pred             EEEECCCEEEEEcCC--CCEEEEecccCcceeeE-EcCCCCCeeEEEEcCCCCEEEEEeCCC-----eEEEccCCCCCcc
Confidence            233356666667655  67889998843311111 1111111112222  677777766543     4788888765433


Q ss_pred             ecCCCCCCCCCCcEEEE---CCEEEEEec-CCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEE--eCCEEEEEcC-Cc
Q 045821          241 HADANMASGWRGPAVVV---DDALYVLDQ-SSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVA--IGKTIFVIGK-GC  313 (352)
Q Consensus       241 ~~~~~~~~~~~~~~~~~---~~~l~~~gg-~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~--~~~~i~v~gG-~~  313 (352)
                      ..-.....  ....+..   +..+++.|+ .....+.+||..+++-...-....    ...++..  .+..+++.+| .+
T Consensus       253 ~~~~~~~~--~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~g~~d  326 (401)
T 4aez_A          253 FTKTNHNA--AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGS----QVTSLIWSPHSKEIMSTHGFPD  326 (401)
T ss_dssp             EEECCCSS--CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSS----CEEEEEECSSSSEEEEEECTTT
T ss_pred             EEecCCcc--eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCC----cEEEEEECCCCCeEEEEeecCC
Confidence            21111111  1112222   446777764 233489999998766433221111    1122222  2344554433 33


Q ss_pred             -eEEEEEcCCccccc
Q 045821          314 -SAVVIDVGNIGNIG  327 (352)
Q Consensus       314 -~~~~~d~~~~~w~~  327 (352)
                       .+.+||........
T Consensus       327 g~i~v~~~~~~~~~~  341 (401)
T 4aez_A          327 NNLSIWSYSSSGLTK  341 (401)
T ss_dssp             CEEEEEEEETTEEEE
T ss_pred             CcEEEEecCCcccee
Confidence             45678887755443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=96.88  E-value=0.23  Score=45.08  Aligned_cols=178  Identities=6%  Similarity=-0.036  Sum_probs=86.7

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEe--cCCCC--CcceeeeeEEEC---CEEEEEeCCCCCCceEEEeCCCCc
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTD--AAPMS--TARCYFPCGVLN---QKIYCIGGLGDTHSWDVYDPRTNN  191 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~--~~~~~--~~r~~~~~~~~~---~~iyv~gG~~~~~~v~~yd~~t~~  191 (352)
                      ++..++.|+.      ...++.++..+.+...  +..+.  ..........-+   ++.++.|+.+  ..+.+||..+..
T Consensus       160 ~~~~l~~~~~------~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d--~~i~vwd~~~~~  231 (450)
T 2vdu_B          160 DDTTVIIADK------FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD--EHIKISHYPQCF  231 (450)
T ss_dssp             TSSEEEEEET------TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT--SCEEEEEESCTT
T ss_pred             CCCEEEEEeC------CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC--CcEEEEECCCCc
Confidence            4555555543      3457888877654321  11111  111111122225   7777777765  678899988775


Q ss_pred             EEEe-cCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeec-CCC-----C-----------------C
Q 045821          192 WKLH-TEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHA-DAN-----M-----------------A  247 (352)
Q Consensus       192 W~~~-~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~-~~~-----~-----------------~  247 (352)
                      .... ..-......+.+.. ++++++.|+.++     .+..||..+.+.... ...     .                 .
T Consensus       232 ~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~-----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (450)
T 2vdu_B          232 IVDKWLFGHKHFVSSICCG-KDYLLLSAGGDD-----KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDI  305 (450)
T ss_dssp             CEEEECCCCSSCEEEEEEC-STTEEEEEESSS-----EEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------C
T ss_pred             eeeeeecCCCCceEEEEEC-CCCEEEEEeCCC-----eEEEEECCCCcEeeeecchhhhhhhhhhccccccccccccccc
Confidence            4322 11111111222333 777777766542     688888877664321 100     0                 0


Q ss_pred             CCCCCcEEE--ECCEEEEEecCCCCeEEEEeC--C-CCceEEccCCCCCcCCCCceEEEeCCEEEEEcCC
Q 045821          248 SGWRGPAVV--VDDALYVLDQSSGTKLMMWQK--E-SREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKG  312 (352)
Q Consensus       248 ~~~~~~~~~--~~~~l~~~gg~~~~~v~~yd~--~-~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~  312 (352)
                      .......+.  -+++.+++++.....+.+||.  . .+.+..+..++..  ....++....+.+++..+.
T Consensus       306 ~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~--~~v~~~~~~~~~~~v~~~~  373 (450)
T 2vdu_B          306 IEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP--YNVISLSAHNDEFQVTLDN  373 (450)
T ss_dssp             BCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS--SCEEEEEEETTEEEEEECC
T ss_pred             ceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC--CceEEEEecCCcEEEEEec
Confidence            000111121  245555555423338999998  3 3455555544331  2223444555677766543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=96.87  E-value=0.1  Score=49.34  Aligned_cols=282  Identities=10%  Similarity=0.009  Sum_probs=130.5

Q ss_pred             CCCcc---CCCcHHHHHHhhc----cCccccchhhhhhhhhhcccccChhhHHHHhhCCCC-CCEEEEEEecCCCCceeE
Q 045821           14 VVPLI---SGLPDDIALFCLA----RVPRRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLD-ETWIYAFCRDNKLERVCC   85 (352)
Q Consensus        14 ~~~~~---~~lp~dl~~~il~----r~p~~~~~~l~~v~k~W~~l~~s~~~~~~~~~~~~~-~~~l~~~gg~~~~~~~~~   85 (352)
                      .+..+   ..|.++=+..|.+    .-+...-.....+.+.|..+......+. +..+... ++.+|+...    ..-.+
T Consensus       105 ~Mp~~~~~~~Lsd~ei~~l~~yi~~~~~~~~~~~~~~i~~s~kv~~~~~~~P~-~~~~~~d~~~~~~V~~~----~~~~V  179 (567)
T 1qks_A          105 GMPNWGTSGELSAEQVDLMANYLLLDPAAPPEFGMKEMRESWKVHVAPEDRPT-QQMNDWDLENLFSVTLR----DAGQI  179 (567)
T ss_dssp             CCTTTSCCCCCCHHHHHHHHHHHHSCCCCCCCCCHHHHHHHCEESSCGGGSCS-SCCSCCCGGGEEEEEET----TTTEE
T ss_pred             CCCCccccCCCCHHHHHHHHHHHhhcccCCCccchhhhhccceeecccccccc-ccccccCCCceEEEEeC----CCCeE
Confidence            34455   3576654444433    2222222334456667776642221111 1111211 567777743    23356


Q ss_pred             EEecCCCCCCCeeEeccCCCcccCCcceEEEEE--CCEEEEEeCCCCCCCCCCeEEEEECC--CCeeEecCCCCCcceee
Q 045821           86 YVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL--GKNAYLLGGCGWSEDATSEVYCYDAS--MNTWTDAAPMSTARCYF  161 (352)
Q Consensus        86 ~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~--t~~W~~~~~~~~~r~~~  161 (352)
                      .++|+  .+++-...-+..     ..-+.++..  +..+|+.+.       ...+.+||+.  +.+  .+..++......
T Consensus       180 ~viD~--~t~~v~~~i~~g-----~~p~~v~~SpDGr~lyv~~~-------dg~V~viD~~~~t~~--~v~~i~~G~~P~  243 (567)
T 1qks_A          180 ALIDG--STYEIKTVLDTG-----YAVHISRLSASGRYLFVIGR-------DGKVNMIDLWMKEPT--TVAEIKIGSEAR  243 (567)
T ss_dssp             EEEET--TTCCEEEEEECS-----SCEEEEEECTTSCEEEEEET-------TSEEEEEETTSSSCC--EEEEEECCSEEE
T ss_pred             EEEEC--CCCeEEEEEeCC-----CCccceEECCCCCEEEEEcC-------CCeEEEEECCCCCCc--EeEEEecCCCCc
Confidence            67798  776543222222     111233332  446787642       3579999995  443  222232222222


Q ss_pred             eeEEE-----CC-EEEEEeCCCCCCceEEEeCCCCcEEE-ecCCC----------CcccceeEEEECCEEEEEccCCCCC
Q 045821          162 PCGVL-----NQ-KIYCIGGLGDTHSWDVYDPRTNNWKL-HTEPN----------IFTEIEDSFVMDGKIYIRCSASAAT  224 (352)
Q Consensus       162 ~~~~~-----~~-~iyv~gG~~~~~~v~~yd~~t~~W~~-~~~~~----------~~~~~~~~~~~~g~iyv~GG~~~~~  224 (352)
                      .++..     ++ .+|+.....  ..+.++|..|.+=.. ++...          .++.....+..++..+++--    .
T Consensus       244 ~ia~s~~~~pDGk~l~v~n~~~--~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~----~  317 (567)
T 1qks_A          244 SIETSKMEGWEDKYAIAGAYWP--PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV----K  317 (567)
T ss_dssp             EEEECCSTTCTTTEEEEEEEET--TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE----T
T ss_pred             eeEEccccCCCCCEEEEEEccC--CeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe----c
Confidence            23333     44 677765433  678889987764322 22111          01111111122333333311    1


Q ss_pred             CceEEEEEeCCCCceeecCCCCCCC-CCCcEEEECCEEEEEecCCCCeEEEEeCCCCceEEccCC-CC-CcCCCCceEEE
Q 045821          225 SHVCALVYEPSTDSWLHADANMASG-WRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRL-ST-LLTRPPCKLVA  301 (352)
Q Consensus       225 ~~~~i~~yd~~~~~W~~~~~~~~~~-~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~-~~-~~~~~~~~~~~  301 (352)
                      ....++..|..+.....+....... .+...+.-+++.+++.....+.|.++|.++++-...-.. .. +.+..+..++.
T Consensus       318 ~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~  397 (567)
T 1qks_A          318 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVH  397 (567)
T ss_dssp             TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEE
T ss_pred             CCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeEC
Confidence            1225777777665443332211111 112233345665555444445899999998864432222 11 11122333333


Q ss_pred             e-CCEEEEEc--CCceEEEEEcCC
Q 045821          302 I-GKTIFVIG--KGCSAVVIDVGN  322 (352)
Q Consensus       302 ~-~~~i~v~g--G~~~~~~~d~~~  322 (352)
                      . ++.+|+.+  |...+.++|...
T Consensus       398 p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          398 PTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             TTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             CCCCcEEEeCCCCCCeEEEecCCC
Confidence            3 36788765  555777888775

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=96.85  E-value=0.025  Score=49.97  Aligned_cols=184  Identities=8%  Similarity=-0.025  Sum_probs=91.4

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE-C-CEEEEEeCCCCCCceEEEeCCCCcEEEec
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-N-QKIYCIGGLGDTHSWDVYDPRTNNWKLHT  196 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~-~~iyv~gG~~~~~~v~~yd~~t~~W~~~~  196 (352)
                      ++..++.|+.+      ..+.+||..+++-...-........ +++.. + ..+++.++.+  ..+.+||..+.+-....
T Consensus       150 dg~~l~sgs~d------g~v~iwd~~~~~~~~~~~~h~~~v~-~v~~s~~~~~~~~s~~~d--g~v~~wd~~~~~~~~~~  220 (357)
T 4g56_B          150 DGTQAVSGGKD------FSVKVWDLSQKAVLKSYNAHSSEVN-CVAACPGKDTIFLSCGED--GRILLWDTRKPKPATRI  220 (357)
T ss_dssp             SSSEEEEEETT------SCEEEEETTTTEEEEEECCCSSCEE-EEEECTTCSSCEEEEETT--SCEEECCTTSSSCBCBC
T ss_pred             CCCEEEEEeCC------CeEEEEECCCCcEEEEEcCCCCCEE-EEEEccCCCceeeeeccC--CceEEEECCCCceeeee
Confidence            45666666543      3578899988764322111111111 12222 3 3466666655  67889999876533221


Q ss_pred             CCCCcccceeEEEE---CCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEE--CC-EEEEEecCCCC
Q 045821          197 EPNIFTEIEDSFVM---DGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVV--DD-ALYVLDQSSGT  270 (352)
Q Consensus       197 ~~~~~~~~~~~~~~---~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~-~l~~~gg~~~~  270 (352)
                      ..........++.+   ++++++.|+.+.     .+..||..+.+-...-.  .....-..+.+  ++ ++++.|+.++ 
T Consensus       221 ~~~~~~~~v~~v~~sp~~~~~la~g~~d~-----~i~~wd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~lasgs~D~-  292 (357)
T 4g56_B          221 DFCASDTIPTSVTWHPEKDDTFACGDETG-----NVSLVNIKNPDSAQTSA--VHSQNITGLAYSYHSSPFLASISEDC-  292 (357)
T ss_dssp             CCTTCCSCEEEEEECTTSTTEEEEEESSS-----CEEEEESSCGGGCEEEC--CCSSCEEEEEECSSSSCCEEEEETTS-
T ss_pred             eeccccccccchhhhhcccceEEEeeccc-----ceeEEECCCCcEeEEEe--ccceeEEEEEEcCCCCCEEEEEeCCC-
Confidence            11111111222332   356777765442     47788886653211100  01111112222  34 5666676655 


Q ss_pred             eEEEEeCCCCceEEccCCCCCcCCCCceEEE--eCCEEEEEcCCce-EEEEEcCCc
Q 045821          271 KLMMWQKESREWSPVGRLSTLLTRPPCKLVA--IGKTIFVIGKGCS-AVVIDVGNI  323 (352)
Q Consensus       271 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~--~~~~i~v~gG~~~-~~~~d~~~~  323 (352)
                      .|.+||..+++....-  ..  ...-.+++.  .++++++-||.+. +.++|+.+.
T Consensus       293 ~i~iwd~~~~~~~~~~--~H--~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          293 TVAVLDADFSEVFRDL--SH--RDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             CEEEECTTSCEEEEEC--CC--SSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             EEEEEECCCCcEeEEC--CC--CCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            8999999887654332  11  111123332  3566666666654 557887654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=96.84  E-value=0.013  Score=51.61  Aligned_cols=187  Identities=9%  Similarity=0.088  Sum_probs=94.4

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcce-eeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCcEEEe
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARC-YFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNNWKLH  195 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~-~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~W~~~  195 (352)
                      ++.+++.||.+      ..+.+||..+++|.....+..... .-..+.+  ++..++.|+.+  ..+.+||..++.++.+
T Consensus        27 ~g~~las~~~D------~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D--~~v~iw~~~~~~~~~~   98 (345)
T 3fm0_A           27 AGTLLASCGGD------RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD--ATTCIWKKNQDDFECV   98 (345)
T ss_dssp             TSSCEEEEETT------SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT--SCEEEEEECCC-EEEE
T ss_pred             CCCEEEEEcCC------CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC--CcEEEEEccCCCeEEE
Confidence            45566666643      357788888887653322211111 1112222  56667777765  6778888887776544


Q ss_pred             cCCCCcccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCC-ceeecCCCCCCCCCCcEE--EECCEEEEEecCCCC
Q 045821          196 TEPNIFTEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTD-SWLHADANMASGWRGPAV--VVDDALYVLDQSSGT  270 (352)
Q Consensus       196 ~~~~~~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~-~W~~~~~~~~~~~~~~~~--~~~~~l~~~gg~~~~  270 (352)
                      ..+.........+.+  ++++++.|+.++     .+..||..+. .+..+.....+......+  .-++++++.|+.++ 
T Consensus        99 ~~~~~h~~~v~~v~~sp~~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~-  172 (345)
T 3fm0_A           99 TTLEGHENEVKSVAWAPSGNLLATCSRDK-----SVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDD-  172 (345)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTS-
T ss_pred             EEccCCCCCceEEEEeCCCCEEEEEECCC-----eEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCC-
Confidence            332221111122222  677777766553     3666776543 232221111111111112  23567777777766 


Q ss_pred             eEEEEeCCCCceEEccCCCCCcCCCCceEE-EeCCEEEEEcCCce-EEEEEc
Q 045821          271 KLMMWQKESREWSPVGRLSTLLTRPPCKLV-AIGKTIFVIGKGCS-AVVIDV  320 (352)
Q Consensus       271 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~i~v~gG~~~-~~~~d~  320 (352)
                      .+.+||..++.|..+..+... ...-.++. ..+++.++.|+.+. +.++|.
T Consensus       173 ~i~~w~~~~~~~~~~~~~~~h-~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          173 TVKLYREEEDDWVCCATLEGH-ESTVWSLAFDPSGQRLASCSDDRTVRIWRQ  223 (345)
T ss_dssp             CEEEEEEETTEEEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             cEEEEEecCCCEEEEEEecCC-CCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence            899999998888755433321 11111222 22455556665553 446664

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=96.83  E-value=0.18  Score=43.74  Aligned_cols=190  Identities=9%  Similarity=0.040  Sum_probs=92.5

Q ss_pred             CEEEEEeCCCCCCCCCCeEEEEECCCCeeEe-cCCCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCcEEEec
Q 045821          120 KNAYLLGGCGWSEDATSEVYCYDASMNTWTD-AAPMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNNWKLHT  196 (352)
Q Consensus       120 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~-~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~  196 (352)
                      +.+++.|+.+      ..+.+||..+++-.. +.....+ . .++...  ++.+++.|+.+  ..+.+||..+.+-...-
T Consensus        85 ~~~l~~~~~d------g~i~v~d~~~~~~~~~~~~~~~~-i-~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~  154 (366)
T 3k26_A           85 HPLLAVAGSR------GIIRIINPITMQCIKHYVGHGNA-I-NELKFHPRDPNLLLSVSKD--HALRLWNIQTDTLVAIF  154 (366)
T ss_dssp             CEEEEEEETT------CEEEEECTTTCCEEEEEESCCSC-E-EEEEECSSCTTEEEEEETT--SCEEEEETTTTEEEEEE
T ss_pred             CCEEEEecCC------CEEEEEEchhceEeeeecCCCCc-E-EEEEECCCCCCEEEEEeCC--CeEEEEEeecCeEEEEe
Confidence            4667777643      468888988765322 2111111 1 112221  55677777765  67899999887643332


Q ss_pred             -CCCCcccceeEEE--ECCEEEEEccCCCCCCceEEEEEeCCCCceeec-CC-------------------------CCC
Q 045821          197 -EPNIFTEIEDSFV--MDGKIYIRCSASAATSHVCALVYEPSTDSWLHA-DA-------------------------NMA  247 (352)
Q Consensus       197 -~~~~~~~~~~~~~--~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~-~~-------------------------~~~  247 (352)
                       ...........+.  -++..++.|+.++     .+..||..+.+-... ..                         ...
T Consensus       155 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (366)
T 3k26_A          155 GGVEGHRDEVLSADYDLLGEKIMSCGMDH-----SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI  229 (366)
T ss_dssp             CSTTSCSSCEEEEEECTTSSEEEEEETTS-----CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSS
T ss_pred             cccccccCceeEEEECCCCCEEEEecCCC-----CEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccC
Confidence             1111111112222  2566666665543     477888766432110 00                         000


Q ss_pred             CCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCce------------EEccCCCCCcCCCCceEEEeC--CEEEEEcCCc
Q 045821          248 SGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREW------------SPVGRLSTLLTRPPCKLVAIG--KTIFVIGKGC  313 (352)
Q Consensus       248 ~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W------------~~~~~~~~~~~~~~~~~~~~~--~~i~v~gG~~  313 (352)
                      ....-..+...+.+++.++.++ .+.+||..+..=            ..+..+..............+  +++++.|+.+
T Consensus       230 ~~~~v~~~~~~~~~l~~~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d  308 (366)
T 3k26_A          230 HRNYVDCVRWLGDLILSKSCEN-AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQV  308 (366)
T ss_dssp             CSSCCCEEEEETTEEEEECSSS-EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTT
T ss_pred             CcceEEEEEEcCCEEEEEecCC-EEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecC
Confidence            1111112333366667776665 899999876431            111111110001111112234  6666666655


Q ss_pred             -eEEEEEcCCccc
Q 045821          314 -SAVVIDVGNIGN  325 (352)
Q Consensus       314 -~~~~~d~~~~~w  325 (352)
                       .+.+||+.....
T Consensus       309 g~i~vwd~~~~~~  321 (366)
T 3k26_A          309 GKLYVWDLEVEDP  321 (366)
T ss_dssp             SCEEEEECCSSSG
T ss_pred             CcEEEEECCCCCC
Confidence             466899987653

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=96.82  E-value=0.19  Score=42.66  Aligned_cols=212  Identities=8%  Similarity=-0.067  Sum_probs=105.5

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCC--eeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRS--WKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASM  145 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~--w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t  145 (352)
                      .+.+++.+..    .-.++.+|+  ++++  |+.-..-.    ..........++.+++.+        ...+..||+ +
T Consensus         4 ~~~~lv~~~~----~~~v~~~d~--~tG~~~w~~~~~~~----~~~~~~~~~pdG~ilvs~--------~~~V~~~d~-~   64 (276)
T 3no2_A            4 PQHLLVGGSG----WNKIAIINK--DTKEIVWEYPLEKG----WECNSVAATKAGEILFSY--------SKGAKMITR-D   64 (276)
T ss_dssp             CCEEEEECTT----CSEEEEEET--TTTEEEEEEECCTT----CCCCEEEECTTSCEEEEC--------BSEEEEECT-T
T ss_pred             CCcEEEeeCC----CCEEEEEEC--CCCeEEEEeCCCcc----CCCcCeEECCCCCEEEeC--------CCCEEEECC-C
Confidence            3456666432    234556687  5554  54332210    112223333477777732        246889999 5


Q ss_pred             Ce--eEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCC-cEEEecCC--CCcc--cceeEEEECCEEEEE
Q 045821          146 NT--WTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTN-NWKLHTEP--NIFT--EIEDSFVMDGKIYIR  217 (352)
Q Consensus       146 ~~--W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~-~W~~~~~~--~~~~--~~~~~~~~~g~iyv~  217 (352)
                      ++  |+.-..  .....+++... ++++++..... ...+..+|+..+ .|+.-...  ....  ........+|.+++.
T Consensus        65 G~~~W~~~~~--~~~~~~~~~~~~dG~~lv~~~~~-~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~  141 (276)
T 3no2_A           65 GRELWNIAAP--AGCEMQTARILPDGNALVAWCGH-PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVP  141 (276)
T ss_dssp             SCEEEEEECC--TTCEEEEEEECTTSCEEEEEEST-TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEE
T ss_pred             CCEEEEEcCC--CCccccccEECCCCCEEEEecCC-CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEE
Confidence            54  664432  11122333333 67776665431 157788888544 24432111  1111  111233446777766


Q ss_pred             ccCCCCCCceEEEEEeCCCC-ceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCc--eEEcc-CCCCCcC
Q 045821          218 CSASAATSHVCALVYEPSTD-SWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESRE--WSPVG-RLSTLLT  293 (352)
Q Consensus       218 GG~~~~~~~~~i~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~--W~~~~-~~~~~~~  293 (352)
                      ....     ..+.+||+..+ .|+.-...   .-+......++.+++.+...+ .+..+|+++++  |+.-. .++....
T Consensus       142 ~~~~-----~~v~~~d~~G~~~w~~~~~~---~~~~~~~~~~g~~~v~~~~~~-~v~~~d~~tG~~~w~~~~~~~~~~~l  212 (276)
T 3no2_A          142 LFAT-----SEVREIAPNGQLLNSVKLSG---TPFSSAFLDNGDCLVACGDAH-CFVQLNLESNRIVRRVNANDIEGVQL  212 (276)
T ss_dssp             ETTT-----TEEEEECTTSCEEEEEECSS---CCCEEEECTTSCEEEECBTTS-EEEEECTTTCCEEEEEEGGGSBSCCC
T ss_pred             ecCC-----CEEEEECCCCCEEEEEECCC---CccceeEcCCCCEEEEeCCCC-eEEEEeCcCCcEEEEecCCCCCCccc
Confidence            4322     26889998732 46654321   111223344677887766544 79999999554  65432 2222111


Q ss_pred             CCCceEE-EeCCEEEEEc
Q 045821          294 RPPCKLV-AIGKTIFVIG  310 (352)
Q Consensus       294 ~~~~~~~-~~~~~i~v~g  310 (352)
                      ....++. ..++.+|+..
T Consensus       213 ~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          213 FFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             SEEEEEEECTTSCEEEEE
T ss_pred             cccccceEcCCCCEEEEe
Confidence            1112222 3477888876

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=96.81  E-value=0.023  Score=49.71  Aligned_cols=181  Identities=12%  Similarity=0.035  Sum_probs=87.4

Q ss_pred             CeEEEEECCCCeeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccc-eeEE-EECC
Q 045821          136 SEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEI-EDSF-VMDG  212 (352)
Q Consensus       136 ~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~-~~~~-~~~g  212 (352)
                      -.++.+|..++++..+...........++.- ++++|+.+.......+.+||..+++++.+......... ...+ .-+|
T Consensus        18 i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg   97 (347)
T 3hfq_A           18 IYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEAR   97 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTT
T ss_pred             EEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCC
Confidence            4567778888887665332211111122222 67888776532226789999988887766532111111 1222 3355


Q ss_pred             -EEEEEccCCCCCCceEEEEEeCC-CCceeecCC------CCCCC---CCC--cEEEECCEEEEEecCCCCeEEEEeCC-
Q 045821          213 -KIYIRCSASAATSHVCALVYEPS-TDSWLHADA------NMASG---WRG--PAVVVDDALYVLDQSSGTKLMMWQKE-  278 (352)
Q Consensus       213 -~iyv~GG~~~~~~~~~i~~yd~~-~~~W~~~~~------~~~~~---~~~--~~~~~~~~l~~~gg~~~~~v~~yd~~-  278 (352)
                       .||+.+...     ..+..||.. +.+...+..      .+..+   ...  .++.-++++|+.+... ..+.+||.. 
T Consensus        98 ~~l~~~~~~~-----~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~-~~v~~~~~~~  171 (347)
T 3hfq_A           98 QLVYSANYHK-----GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGS-DKVYVYNVSD  171 (347)
T ss_dssp             TEEEEEETTT-----TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTT-TEEEEEEECT
T ss_pred             CEEEEEeCCC-----CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCC-CEEEEEEECC
Confidence             466663221     246666663 333333211      01000   011  1223367766655433 489999988 


Q ss_pred             CCceEEccCCCCCcCCCCceE-EEeCC-EEEEEcC-CceEEEEEcCC
Q 045821          279 SREWSPVGRLSTLLTRPPCKL-VAIGK-TIFVIGK-GCSAVVIDVGN  322 (352)
Q Consensus       279 ~~~W~~~~~~~~~~~~~~~~~-~~~~~-~i~v~gG-~~~~~~~d~~~  322 (352)
                      +++...+.............+ ...++ .+|+.+. ...+.+||...
T Consensus       172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~  218 (347)
T 3hfq_A          172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDT  218 (347)
T ss_dssp             TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence            566655432211000011112 22344 4887653 34566777664

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.79  E-value=0.22  Score=48.87  Aligned_cols=141  Identities=9%  Similarity=0.095  Sum_probs=78.6

Q ss_pred             CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCc-ccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCceeecC
Q 045821          167 NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIF-TEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTDSWLHAD  243 (352)
Q Consensus       167 ~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~-~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~  243 (352)
                      ++.|++.+|..  ..+.+||+.+++++.+...... .....+...  +|.|++. ...      .+.+||+.+++++...
T Consensus       482 ~g~lWi~~~t~--~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~------Gl~~~~~~~~~~~~~~  552 (758)
T 3ott_A          482 EGNVWVLLYNN--KGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHG------GVMRINPKDESQQSIS  552 (758)
T ss_dssp             TSCEEEEETTC--SSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETT------EEEEECC--CCCCBCC
T ss_pred             CCCEEEEccCC--CCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecC------ceEEEecCCCceEEec
Confidence            47888865543  5689999999998877421111 111122222  6788875 222      4889999988887653


Q ss_pred             C-CCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEe-CCEEEEEcCCceEEEEEcC
Q 045821          244 A-NMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAI-GKTIFVIGKGCSAVVIDVG  321 (352)
Q Consensus       244 ~-~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~i~v~gG~~~~~~~d~~  321 (352)
                      . ..+.......+..+|.|++... .  .+.+||+++.+..... ++....  ..++... ++. +.|||......|+|+
T Consensus       553 ~~gl~~~~i~~i~~~~g~lWi~t~-~--Gl~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~G~-l~fG~~~Gl~~f~p~  625 (758)
T 3ott_A          553 FGSFSNNEILSMTCVKNSIWVSTT-N--GLWIIDRKTMDARQQN-MTNKRF--TSLLFDPKEDC-VYLGGADGFGISHSN  625 (758)
T ss_dssp             CCC---CCEEEEEEETTEEEEEES-S--CEEEEETTTCCEEEC---CCCCC--SEEEEETTTTE-EEEECBSEEEEEEC-
T ss_pred             ccCCCccceEEEEECCCCEEEECC-C--CeEEEcCCCceeEEec-CCCCce--eeeEEECCCCc-EEEecCCceEEEChh
Confidence            2 1111111112334778877653 2  6999999998887653 332111  1222222 455 456778888889987


Q ss_pred             Cc
Q 045821          322 NI  323 (352)
Q Consensus       322 ~~  323 (352)
                      ..
T Consensus       626 ~~  627 (758)
T 3ott_A          626 LE  627 (758)
T ss_dssp             --
T ss_pred             hc
Confidence            54

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=96.77  E-value=0.055  Score=47.77  Aligned_cols=177  Identities=10%  Similarity=0.052  Sum_probs=80.1

Q ss_pred             CeEEEEECCCCeeEecCCCC-Ccce--eeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEE-E
Q 045821          136 SEVYCYDASMNTWTDAAPMS-TARC--YFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFV-M  210 (352)
Q Consensus       136 ~~~~~~d~~t~~W~~~~~~~-~~r~--~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~-~  210 (352)
                      ..+.+||..+++-..+.... ..+.  -.+++.. +++.++.|+.+  ..+.+||..+.+-...-...... ...++. .
T Consensus       115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d--g~v~iwd~~~~~~~~~~~~h~~~-v~~v~~s~  191 (357)
T 4g56_B          115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD--FSVKVWDLSQKAVLKSYNAHSSE-VNCVAACP  191 (357)
T ss_dssp             SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT--SCEEEEETTTTEEEEEECCCSSC-EEEEEECT
T ss_pred             CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC--CeEEEEECCCCcEEEEEcCCCCC-EEEEEEcc
Confidence            45788888776533222211 0111  1112222 56677777765  67899999987643321111111 112222 2


Q ss_pred             CC-EEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEE---CCEEEEEecCCCCeEEEEeCCCCceEEcc
Q 045821          211 DG-KIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVV---DDALYVLDQSSGTKLMMWQKESREWSPVG  286 (352)
Q Consensus       211 ~g-~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~l~~~gg~~~~~v~~yd~~~~~W~~~~  286 (352)
                      ++ .+++.++.++     .+..||..+.+-...............+.+   ++.+++.|+.++ .+.+||..+.+-...-
T Consensus       192 ~~~~~~~s~~~dg-----~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~-~i~~wd~~~~~~~~~~  265 (357)
T 4g56_B          192 GKDTIFLSCGEDG-----RILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG-NVSLVNIKNPDSAQTS  265 (357)
T ss_dssp             TCSSCEEEEETTS-----CEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS-CEEEEESSCGGGCEEE
T ss_pred             CCCceeeeeccCC-----ceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc-ceeEEECCCCcEeEEE
Confidence            33 4666665543     477788876553322111111111112332   456777777665 8999998865422111


Q ss_pred             CCCCCcCCCCceEEE--eCCEEEEEcCCc-eEEEEEcCCcc
Q 045821          287 RLSTLLTRPPCKLVA--IGKTIFVIGKGC-SAVVIDVGNIG  324 (352)
Q Consensus       287 ~~~~~~~~~~~~~~~--~~~~i~v~gG~~-~~~~~d~~~~~  324 (352)
                      ...   .....+++.  .++++++.|+.+ .+.++|++...
T Consensus       266 ~~~---~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~  303 (357)
T 4g56_B          266 AVH---SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE  303 (357)
T ss_dssp             CCC---SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE
T ss_pred             ecc---ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc
Confidence            111   111122222  234555556554 46678887643

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=96.75  E-value=0.013  Score=57.53  Aligned_cols=189  Identities=7%  Similarity=0.001  Sum_probs=98.7

Q ss_pred             CEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE--C--CEEEEEeCCCCCCceEEEeCCCCcEEEe
Q 045821          120 KNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL--N--QKIYCIGGLGDTHSWDVYDPRTNNWKLH  195 (352)
Q Consensus       120 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~--~--~~iyv~gG~~~~~~v~~yd~~t~~W~~~  195 (352)
                      +..++.|+.      ...+.+||..++++..+..+......-..+.+  +  +..++.|+.+  ..+.+||..++.|..+
T Consensus        21 g~~latg~~------dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D--g~I~vwd~~~~~~~~~   92 (753)
T 3jro_A           21 GKRLATCSS------DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD--GKVLIWKEENGRWSQI   92 (753)
T ss_dssp             SCCEEEEET------TTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT--SCEEEEEEETTEEEEE
T ss_pred             CCeEEEEEC------CCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC--CeEEEEECCCCccccc
Confidence            445555543      24577888876666655443322221222222  3  6667777765  6789999999887666


Q ss_pred             cCCCCcccceeEEEE--C--CEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEE--------------
Q 045821          196 TEPNIFTEIEDSFVM--D--GKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVV--------------  257 (352)
Q Consensus       196 ~~~~~~~~~~~~~~~--~--g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~--------------  257 (352)
                      ............+.+  +  +.+++.|+.++     .+..||..+..-...............+..              
T Consensus        93 ~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg-----~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~  167 (753)
T 3jro_A           93 AVHAVHSASVNSVQWAPHEYGPLLLVASSDG-----KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGT  167 (753)
T ss_dssp             EEECCCSSCEEEEEECCGGGCSEEEEEETTS-----EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------C
T ss_pred             ccccCCCCCeEEEEECCCCCCCEEEEEeCCC-----cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccC
Confidence            543322222222222  3  67777766553     577888766522111000000000111111              


Q ss_pred             -CCEEEEEecCCCCeEEEEeCCCC--ceEEccCCCCCcCCCCceEEE-eC---CEEEEEcCCce-EEEEEcCCc
Q 045821          258 -DDALYVLDQSSGTKLMMWQKESR--EWSPVGRLSTLLTRPPCKLVA-IG---KTIFVIGKGCS-AVVIDVGNI  323 (352)
Q Consensus       258 -~~~l~~~gg~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~-~~---~~i~v~gG~~~-~~~~d~~~~  323 (352)
                       ++.+++.|+.++ .+.+||..++  .+..+..+... .....++.. .+   +++++.|+.+. +.+||+...
T Consensus       168 ~d~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          168 KESRKFVTGGADN-LVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             GGGCCEEEEETTS-CEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred             CCCCEEEEEECCC-eEEEEeccCCcccceeeeeecCC-CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence             366777777766 7888887654  34443332211 111122222 23   67777776654 668998764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=96.74  E-value=0.14  Score=44.60  Aligned_cols=65  Identities=11%  Similarity=0.058  Sum_probs=36.0

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEec-CCCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCc
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDA-APMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNN  191 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~-~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~  191 (352)
                      ++.+++.|+.+      ..+.+||..+++-... ..+...........+  ++..++.|+.+  ..+.+||..+.+
T Consensus       127 ~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~  194 (366)
T 3k26_A          127 DPNLLLSVSKD------HALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD--HSLKLWRINSKR  194 (366)
T ss_dssp             CTTEEEEEETT------SCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETT--SCEEEEESCSHH
T ss_pred             CCCEEEEEeCC------CeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCC--CCEEEEECCCCc
Confidence            45666666643      4588899988764332 211111111122222  45566666655  678899988653

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=96.70  E-value=0.11  Score=46.37  Aligned_cols=149  Identities=10%  Similarity=0.038  Sum_probs=75.7

Q ss_pred             CEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCc----ceeeeeEEE--CC-EEEEEeCCCCC-CceEEEeCCCCc
Q 045821          120 KNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTA----RCYFPCGVL--NQ-KIYCIGGLGDT-HSWDVYDPRTNN  191 (352)
Q Consensus       120 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~----r~~~~~~~~--~~-~iyv~gG~~~~-~~v~~yd~~t~~  191 (352)
                      +.+++.|+.+      ..+.+||..+++-...-.....    ........+  ++ .+++.++.+.. ..+.+||..+..
T Consensus       178 ~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~  251 (416)
T 2pm9_A          178 AHVFASAGSS------NFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN  251 (416)
T ss_dssp             TTEEEEESSS------SCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred             CcEEEEEcCC------CCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence            4577777643      4588999988764332222211    111122222  33 46666665421 378899998753


Q ss_pred             EEEecCCC-CcccceeEEEE---CCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECC-EEEEEec
Q 045821          192 WKLHTEPN-IFTEIEDSFVM---DGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDD-ALYVLDQ  266 (352)
Q Consensus       192 W~~~~~~~-~~~~~~~~~~~---~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~l~~~gg  266 (352)
                      - .+..+. ........+.+   ++++++.|+.++     .+..||..+.+-...-.............-++ .+++.++
T Consensus       252 ~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg-----~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~  325 (416)
T 2pm9_A          252 T-PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN-----TVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS  325 (416)
T ss_dssp             S-CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSS-----EEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECC
T ss_pred             C-CcEEeecCccCceeEEEeCCCCCCeEEEEeCCC-----CEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEe
Confidence            1 111122 11111122222   677777766543     58888887664322111111111112222344 6777777


Q ss_pred             CCCCeEEEEeCCCCc
Q 045821          267 SSGTKLMMWQKESRE  281 (352)
Q Consensus       267 ~~~~~v~~yd~~~~~  281 (352)
                      .++ .+.+||..+..
T Consensus       326 ~d~-~i~iw~~~~~~  339 (416)
T 2pm9_A          326 FDN-KIEVQTLQNLT  339 (416)
T ss_dssp             SSS-EEEEEESCCCC
T ss_pred             cCC-cEEEEEccCCC
Confidence            666 89999887644

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.69  E-value=0.2  Score=43.29  Aligned_cols=195  Identities=9%  Similarity=-0.016  Sum_probs=101.5

Q ss_pred             eEEEEE--CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCc---ceeeeeEEE--CCEEEEEeCCC--------
Q 045821          113 MGFEVL--GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTA---RCYFPCGVL--NQKIYCIGGLG--------  177 (352)
Q Consensus       113 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~---r~~~~~~~~--~~~iyv~gG~~--------  177 (352)
                      ++++..  ++.||+....       ..+.++|+.+++.+.+......   .....+++-  ++.+|+.....        
T Consensus        83 ~gi~~~~~~g~l~v~d~~-------~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~  155 (322)
T 2fp8_A           83 YDISYNLQNNQLYIVDCY-------YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQ  155 (322)
T ss_dssp             EEEEEETTTTEEEEEETT-------TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHH
T ss_pred             ceEEEcCCCCcEEEEECC-------CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccc
Confidence            344544  5789987431       3478899887765554322111   111223333  57899875321        


Q ss_pred             -------CCCceEEEeCCCCcEEEecCCCCcccceeEEEE-CC-EEEEEccCCCCCCceEEEEEeCCCC---ceeecCCC
Q 045821          178 -------DTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM-DG-KIYIRCSASAATSHVCALVYEPSTD---SWLHADAN  245 (352)
Q Consensus       178 -------~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g-~iyv~GG~~~~~~~~~i~~yd~~~~---~W~~~~~~  245 (352)
                             ....+++||+.+.+.+.+..-  .......+.. ++ .||+.-..     ...|++|+....   ..+.+.. 
T Consensus       156 ~~~~~~~~~g~v~~~d~~~~~~~~~~~~--~~~p~gia~~~dg~~lyv~d~~-----~~~I~~~~~~~~~~~~~~~~~~-  227 (322)
T 2fp8_A          156 QIMDTSDKTGRLIKYDPSTKETTLLLKE--LHVPGGAEVSADSSFVLVAEFL-----SHQIVKYWLEGPKKGTAEVLVK-  227 (322)
T ss_dssp             HHHHHTCCCEEEEEEETTTTEEEEEEEE--ESCCCEEEECTTSSEEEEEEGG-----GTEEEEEESSSTTTTCEEEEEE-
T ss_pred             eehcccCCCceEEEEeCCCCEEEEeccC--CccCcceEECCCCCEEEEEeCC-----CCeEEEEECCCCcCCccceEEe-
Confidence                   115689999988876554211  1111122332 44 58887321     136889988653   3333221 


Q ss_pred             CCCCCCCcEEEECCEEEEEecC--------C-CCeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEcCC-ceE
Q 045821          246 MASGWRGPAVVVDDALYVLDQS--------S-GTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKG-CSA  315 (352)
Q Consensus       246 ~~~~~~~~~~~~~~~l~~~gg~--------~-~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~-~~~  315 (352)
                      .+. -.+.++.-+|.||+....        . ...+.+||++.+.-..+............+++..+++||+.+.. ..+
T Consensus       228 ~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i  306 (322)
T 2fp8_A          228 IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSV  306 (322)
T ss_dssp             CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEE
T ss_pred             CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCce
Confidence            111 011122235678877533        0 13699999986655555422111122334455578999998643 356


Q ss_pred             EEEEcCCc
Q 045821          316 VVIDVGNI  323 (352)
Q Consensus       316 ~~~d~~~~  323 (352)
                      ..|+++..
T Consensus       307 ~~~~~~~~  314 (322)
T 2fp8_A          307 GILVYDKK  314 (322)
T ss_dssp             EEEEC---
T ss_pred             EEEecccc
Confidence            67887643

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=96.66  E-value=0.27  Score=42.25  Aligned_cols=189  Identities=9%  Similarity=0.057  Sum_probs=87.5

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECC--CCeeEecCCCCCcceeeeeEEE-CC-EEEEEeCCCCCCceEEEeCCCCc-EE
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDAS--MNTWTDAAPMSTARCYFPCGVL-NQ-KIYCIGGLGDTHSWDVYDPRTNN-WK  193 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~--t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~gG~~~~~~v~~yd~~t~~-W~  193 (352)
                      +..+|+.+..      ...+.+|+..  ++++..+..++.+.....++.. ++ .+|+.+..+  ..+.+||..++. .+
T Consensus        49 g~~l~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--~~i~~~d~~~~~~~~  120 (343)
T 1ri6_A           49 KRYLYVGVRP------EFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNA--GNVSVTRLEDGLPVG  120 (343)
T ss_dssp             SSEEEEEETT------TTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTT--TEEEEEEEETTEEEE
T ss_pred             CCEEEEeecC------CCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCC--CeEEEEECCCCcccc
Confidence            3346665432      2567777766  6777655443322221222222 34 466665422  568888884221 22


Q ss_pred             EecCCCCcccceeE-EEECC-EEEEEccCCCCCCceEEEEEeCCC-CceeecC--CC-CCCCCCCcEE--EECCE-EEEE
Q 045821          194 LHTEPNIFTEIEDS-FVMDG-KIYIRCSASAATSHVCALVYEPST-DSWLHAD--AN-MASGWRGPAV--VVDDA-LYVL  264 (352)
Q Consensus       194 ~~~~~~~~~~~~~~-~~~~g-~iyv~GG~~~~~~~~~i~~yd~~~-~~W~~~~--~~-~~~~~~~~~~--~~~~~-l~~~  264 (352)
                      .+............ ..-++ .||+.+...     ..+..||..+ .+...+.  .. .........+  .-+++ +|+.
T Consensus       121 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~  195 (343)
T 1ri6_A          121 VVDVVEGLDGCHSANISPDNRTLWVPALKQ-----DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV  195 (343)
T ss_dssp             EEEEECCCTTBCCCEECTTSSEEEEEEGGG-----TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE
T ss_pred             ccccccCCCCceEEEECCCCCEEEEecCCC-----CEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEE
Confidence            22211111111222 22244 577764222     2588888876 6665322  10 1111111112  22454 6666


Q ss_pred             ecCCCCeEEEEeCC--CCceEEc---cCCCCCcC-C-CCceEEE-e-CCEEEEEc-CCceEEEEEcC
Q 045821          265 DQSSGTKLMMWQKE--SREWSPV---GRLSTLLT-R-PPCKLVA-I-GKTIFVIG-KGCSAVVIDVG  321 (352)
Q Consensus       265 gg~~~~~v~~yd~~--~~~W~~~---~~~~~~~~-~-~~~~~~~-~-~~~i~v~g-G~~~~~~~d~~  321 (352)
                      +...+ .+.+||..  ++.+..+   ..++.... . ....+.. . +..||+.+ +...+.+||+.
T Consensus       196 ~~~~~-~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          196 NELNS-SVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             ETTTT-EEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             eCCCC-EEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence            54444 89999885  3444332   33332111 1 1112222 2 44677665 34457789987

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=96.65  E-value=0.034  Score=47.71  Aligned_cols=190  Identities=10%  Similarity=0.059  Sum_probs=97.3

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecC
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTE  197 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~  197 (352)
                      ++.+|+..-.      ...+++||+.+++...+.. +. + -.+.+.. ++++++..+    ..+.+||+.+++++.+..
T Consensus        24 ~~~l~~~d~~------~~~i~~~d~~~~~~~~~~~-~~-~-~~~i~~~~dG~l~v~~~----~~l~~~d~~~g~~~~~~~   90 (297)
T 3g4e_A           24 SNSLLFVDIP------AKKVCRWDSFTKQVQRVTM-DA-P-VSSVALRQSGGYVATIG----TKFCALNWKEQSAVVLAT   90 (297)
T ss_dssp             TTEEEEEETT------TTEEEEEETTTCCEEEEEC-SS-C-EEEEEEBTTSSEEEEET----TEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEECC------CCEEEEEECCCCcEEEEeC-CC-c-eEEEEECCCCCEEEEEC----CeEEEEECCCCcEEEEEe
Confidence            4678887632      3578999999876544322 11 1 1122222 567777653    679999999998887654


Q ss_pred             CCCc---ccceeE-EEECCEEEEEccCCC------CCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECC-EEEEEec
Q 045821          198 PNIF---TEIEDS-FVMDGKIYIRCSASA------ATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDD-ALYVLDQ  266 (352)
Q Consensus       198 ~~~~---~~~~~~-~~~~g~iyv~GG~~~------~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~l~~~gg  266 (352)
                      ....   ...... +.-+|++|+..-...      ......++++|+. .+...+....... .+.+..-++ .||+...
T Consensus        91 ~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~p-ngi~~spdg~~lyv~~~  168 (297)
T 3g4e_A           91 VDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDIS-NGLDWSLDHKIFYYIDS  168 (297)
T ss_dssp             CCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBE-EEEEECTTSCEEEEEEG
T ss_pred             cCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccc-cceEEcCCCCEEEEecC
Confidence            3221   111122 223788887521111      0123478888875 3333321111000 111122244 5777765


Q ss_pred             CCCCeEEEEeC--CCCceEE---ccCCCCCcCCCCceEEE-eCCEEEEEc-CCceEEEEEcCCccc
Q 045821          267 SSGTKLMMWQK--ESREWSP---VGRLSTLLTRPPCKLVA-IGKTIFVIG-KGCSAVVIDVGNIGN  325 (352)
Q Consensus       267 ~~~~~v~~yd~--~~~~W~~---~~~~~~~~~~~~~~~~~-~~~~i~v~g-G~~~~~~~d~~~~~w  325 (352)
                      ..+ .|++||.  .++....   +..++.. ...-.+++. -++.||+-. +...+..||+++...
T Consensus       169 ~~~-~i~~~~~d~~~G~~~~~~~~~~~~~~-~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~  232 (297)
T 3g4e_A          169 LSY-SVDAFDYDLQTGQISNRRSVYKLEKE-EQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKR  232 (297)
T ss_dssp             GGT-EEEEEEECTTTCCEEEEEEEEECCGG-GCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCE
T ss_pred             CCC-cEEEEeccCCCCcccCcEEEEECCCC-CCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceE
Confidence            444 8999876  4554432   1122210 011123333 356788764 333577788875443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.64  E-value=0.53  Score=45.63  Aligned_cols=117  Identities=21%  Similarity=0.241  Sum_probs=72.4

Q ss_pred             EEECCEEEEEeCCCCCCCCCCeEEEEECCCCe--eEecCCCCCc--------ceeeeeEEECCEEEEEeCCCCCCceEEE
Q 045821          116 EVLGKNAYLLGGCGWSEDATSEVYCYDASMNT--WTDAAPMSTA--------RCYFPCGVLNQKIYCIGGLGDTHSWDVY  185 (352)
Q Consensus       116 ~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~gG~~~~~~v~~y  185 (352)
                      ++.++.||+...       ...++.+|..|++  |+.-...+..        ....+.++.+++||+....   ..+..+
T Consensus        67 ~v~~g~vyv~~~-------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~d---g~l~Al  136 (689)
T 1yiq_A           67 IVVDGVMYTTGP-------FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLD---GRLEAI  136 (689)
T ss_dssp             EEETTEEEEECG-------GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTT---SEEEEE
T ss_pred             EEECCEEEEEcC-------CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccC---CEEEEE
Confidence            467999999753       3568999998876  8765433211        0122346678999886532   678999


Q ss_pred             eCCCCc--EEEecC-CCCc--ccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCc--eeec
Q 045821          186 DPRTNN--WKLHTE-PNIF--TEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDS--WLHA  242 (352)
Q Consensus       186 d~~t~~--W~~~~~-~~~~--~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~--W~~~  242 (352)
                      |..|++  |+.-.. ....  ......++.++.+|+-.+.........+..||..+++  |+.-
T Consensus       137 Da~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          137 DAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             ETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             ECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence            998874  876542 1111  1122335678998885332221223379999998775  8753

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.64  E-value=0.13  Score=50.52  Aligned_cols=186  Identities=8%  Similarity=-0.007  Sum_probs=90.6

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEe-cCCCCCcceeeeeEE-ECCEEEEEeCCCCCCceEEEeCCCC-cEEEe
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTD-AAPMSTARCYFPCGV-LNQKIYCIGGLGDTHSWDVYDPRTN-NWKLH  195 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~-~~~~~~~r~~~~~~~-~~~~iyv~gG~~~~~~v~~yd~~t~-~W~~~  195 (352)
                      ++..++.|+.      ...+.+||..+++... +.....+ . .+++. -++...+.|+.+  ..+.+||..++ .....
T Consensus        66 ~~~~l~~~~~------dg~i~vw~~~~~~~~~~~~~~~~~-v-~~~~~s~~~~~l~~~~~d--g~i~vw~~~~~~~~~~~  135 (814)
T 3mkq_A           66 RKNWIIVGSD------DFRIRVFNYNTGEKVVDFEAHPDY-I-RSIAVHPTKPYVLSGSDD--LTVKLWNWENNWALEQT  135 (814)
T ss_dssp             GGTEEEEEET------TSEEEEEETTTCCEEEEEECCSSC-E-EEEEECSSSSEEEEEETT--SEEEEEEGGGTSEEEEE
T ss_pred             CCCEEEEEeC------CCeEEEEECCCCcEEEEEecCCCC-E-EEEEEeCCCCEEEEEcCC--CEEEEEECCCCceEEEE
Confidence            4555666653      3568899988876432 2211111 1 11111 145555555544  67889998776 22222


Q ss_pred             cCCCCcccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCceeec-CCCCCCCCCCcEEEE--CCEEEEEecCCCC
Q 045821          196 TEPNIFTEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTDSWLHA-DANMASGWRGPAVVV--DDALYVLDQSSGT  270 (352)
Q Consensus       196 ~~~~~~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~-~~~~~~~~~~~~~~~--~~~l~~~gg~~~~  270 (352)
                      -.. ....-..++..  ++.+++.|+.++     .+..||..+..-... ...............  ++..++.|+.++ 
T Consensus       136 ~~~-~~~~v~~~~~~p~~~~~l~~~~~dg-----~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-  208 (814)
T 3mkq_A          136 FEG-HEHFVMCVAFNPKDPSTFASGCLDR-----TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL-  208 (814)
T ss_dssp             EEC-CSSCEEEEEEETTEEEEEEEEETTS-----EEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTS-
T ss_pred             EcC-CCCcEEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCC-
Confidence            111 11111222333  466777765543     578888765432211 111111111111222  677777777666 


Q ss_pred             eEEEEeCCCCceEEccCCCCCcCCCCceEE-EeCCEEEEEcCCc-eEEEEEcCCcc
Q 045821          271 KLMMWQKESREWSPVGRLSTLLTRPPCKLV-AIGKTIFVIGKGC-SAVVIDVGNIG  324 (352)
Q Consensus       271 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~i~v~gG~~-~~~~~d~~~~~  324 (352)
                      .+.+||..+++-...-....   ....++. ..++.+++.|+.+ .+.+||+.+..
T Consensus       209 ~i~~~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~  261 (814)
T 3mkq_A          209 TIKIWDYQTKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK  261 (814)
T ss_dssp             EEEEEETTTTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCS
T ss_pred             EEEEEECCCCcEEEEEcCCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            89999988765332211110   1111222 2345555555544 46678877643

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.60  E-value=0.3  Score=41.94  Aligned_cols=218  Identities=11%  Similarity=0.058  Sum_probs=108.1

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-CCEEEEEeCCCCCCCCCCeEEEEECCCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-GKNAYLLGGCGWSEDATSEVYCYDASMN  146 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~  146 (352)
                      ++.||+.-.    ..-.++.+|+  .+. .......+.     .-+.++.. ++.+|+......    ...++.+|+.++
T Consensus        42 ~g~lyv~d~----~~~~I~~~d~--~g~-~~~~~~~~~-----~p~gia~~~dG~l~vad~~~~----~~~v~~~d~~~g  105 (306)
T 2p4o_A           42 DGTIFVTNH----EVGEIVSITP--DGN-QQIHATVEG-----KVSGLAFTSNGDLVATGWNAD----SIPVVSLVKSDG  105 (306)
T ss_dssp             TSCEEEEET----TTTEEEEECT--TCC-EEEEEECSS-----EEEEEEECTTSCEEEEEECTT----SCEEEEEECTTS
T ss_pred             CCCEEEEeC----CCCeEEEECC--CCc-eEEEEeCCC-----CceeEEEcCCCcEEEEeccCC----cceEEEEcCCCC
Confidence            566888732    2235788898  653 333323321     12333333 567888753211    135888998888


Q ss_pred             eeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCc---EEEec-----CC-CCcccceeEEEECCEEEE
Q 045821          147 TWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNN---WKLHT-----EP-NIFTEIEDSFVMDGKIYI  216 (352)
Q Consensus       147 ~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~---W~~~~-----~~-~~~~~~~~~~~~~g~iyv  216 (352)
                      +...+...+..+.....+.. ++.+|+.....  ..++++|+.+..   |..-.     .. ...........-++.||+
T Consensus       106 ~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~--g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv  183 (306)
T 2p4o_A          106 TVETLLTLPDAIFLNGITPLSDTQYLTADSYR--GAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYV  183 (306)
T ss_dssp             CEEEEEECTTCSCEEEEEESSSSEEEEEETTT--TEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEE
T ss_pred             eEEEEEeCCCccccCcccccCCCcEEEEECCC--CeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEE
Confidence            87766554443333333333 45677765322  678999987642   21111     00 011111223333558998


Q ss_pred             EccCCCCCCceEEEEEeCCC-CceeecCCCCC-CCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCC
Q 045821          217 RCSASAATSHVCALVYEPST-DSWLHADANMA-SGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTR  294 (352)
Q Consensus       217 ~GG~~~~~~~~~i~~yd~~~-~~W~~~~~~~~-~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~  294 (352)
                      .-..     ...|++||... .+......... ..-.+.++.-+|.||+..... +.|.+||++ ++...+...+.. ..
T Consensus       184 ~d~~-----~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~-~~V~~~~~~-G~~~~~~~~~~~-~~  255 (306)
T 2p4o_A          184 SNTE-----KMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIY-NSVVRIAPD-RSTTIIAQAEQG-VI  255 (306)
T ss_dssp             EETT-----TTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTT-CCEEEECTT-CCEEEEECGGGT-CT
T ss_pred             EeCC-----CCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCC-CeEEEECCC-CCEEEEeecccc-cC
Confidence            7422     23688998764 22211100000 011222333467888775433 389999997 444444322211 11


Q ss_pred             CCceEEEe-----CCEEEEEcC
Q 045821          295 PPCKLVAI-----GKTIFVIGK  311 (352)
Q Consensus       295 ~~~~~~~~-----~~~i~v~gG  311 (352)
                      .-.+++.-     ++.|||...
T Consensus       256 ~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          256 GSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             TEEEEEECCSTTTTTEEEEEEC
T ss_pred             CceEEEEecccCCCCEEEEECC
Confidence            12233322     367888753

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.58  E-value=0.38  Score=42.99  Aligned_cols=211  Identities=8%  Similarity=0.035  Sum_probs=115.3

Q ss_pred             eEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE--CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceee
Q 045821           84 CCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL--GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYF  161 (352)
Q Consensus        84 ~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~  161 (352)
                      .+..+++  .......+....     ....+++..  ++.||+..-      ....++++++.......+...... ...
T Consensus        97 ~I~~i~~--~~~~~~~~~~~~-----~~~~gl~~d~~~~~ly~~D~------~~~~I~r~~~~g~~~~~~~~~~~~-~p~  162 (386)
T 3v65_B           97 DIRQVLP--HRSEYTLLLNNL-----ENAIALDFHHRRELVFWSDV------TLDRILRANLNGSNVEEVVSTGLE-SPG  162 (386)
T ss_dssp             CEEEECT--TSCCCEEEECSC-----SCEEEEEEETTTTEEEEEET------TTTEEEEEETTSCCEEEEECSSCS-CCC
T ss_pred             cceeecc--CCCcEEEEecCC-----CccEEEEEecCCCeEEEEeC------CCCcEEEEecCCCCcEEEEeCCCC-Ccc
Confidence            4566677  666655554322     112334433  578998853      246789999987765544221111 112


Q ss_pred             eeEE--ECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCC
Q 045821          162 PCGV--LNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTD  237 (352)
Q Consensus       162 ~~~~--~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~  237 (352)
                      .+++  .++.||+.-...  ..++++++....-+.+.... ...-...++.  ++.||+.--..    ...|+++++...
T Consensus       163 glavd~~~g~lY~~d~~~--~~I~~~~~dg~~~~~l~~~~-l~~P~giavdp~~g~ly~td~~~----~~~I~r~~~dG~  235 (386)
T 3v65_B          163 GLAVDWVHDKLYWTDSGT--SRIEVANLDGAHRKVLLWQS-LEKPRAIALHPMEGTIYWTDWGN----TPRIEASSMDGS  235 (386)
T ss_dssp             CEEEETTTTEEEEEETTT--TEEEECBTTSCSCEEEECSS-CSCEEEEEEETTTTEEEEEECSS----SCEEEEEETTSC
T ss_pred             EEEEEeCCCeEEEEcCCC--CeEEEEeCCCCceEEeecCC-CCCCcEEEEEcCCCeEEEeccCC----CCEEEEEeCCCC
Confidence            3333  368999986543  67888888765433332111 1111233333  68999973211    247899988654


Q ss_pred             ceeec-CCCCCCCCCCcEEE-ECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEc-CCce
Q 045821          238 SWLHA-DANMASGWRGPAVV-VDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIG-KGCS  314 (352)
Q Consensus       238 ~W~~~-~~~~~~~~~~~~~~-~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~g-G~~~  314 (352)
                      .-+.+ ......+ .+.++. .++.||+.....+ .|+++|++...-..+....   ...-.++++.++.||+.. +...
T Consensus       236 ~~~~~~~~~~~~P-nGlavd~~~~~lY~aD~~~~-~I~~~d~dG~~~~~~~~~~---~~~P~giav~~~~ly~td~~~~~  310 (386)
T 3v65_B          236 GRRIIADTHLFWP-NGLTIDYAGRRMYWVDAKHH-VIERANLDGSHRKAVISQG---LPHPFAITVFEDSLYWTDWHTKS  310 (386)
T ss_dssp             SCEEEECSSCSCE-EEEEEEGGGTEEEEEETTTT-EEEEECTTSCSCEEEECSS---CSSEEEEEEETTEEEEEETTTTE
T ss_pred             CcEEEEECCCCCe-eeEEEeCCCCEEEEEECCCC-EEEEEeCCCCeeEEEEECC---CCCceEEEEECCEEEEeeCCCCe
Confidence            33332 1111000 111222 3789999976554 8999998764433332211   123356777889999875 4445


Q ss_pred             EEEEEc
Q 045821          315 AVVIDV  320 (352)
Q Consensus       315 ~~~~d~  320 (352)
                      +..+|.
T Consensus       311 V~~~~~  316 (386)
T 3v65_B          311 INSANK  316 (386)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            666774

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=96.58  E-value=0.074  Score=44.55  Aligned_cols=191  Identities=10%  Similarity=-0.085  Sum_probs=93.3

Q ss_pred             eEEEecCCCCC-CCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeee
Q 045821           84 CCYVLDPNSTR-RSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFP  162 (352)
Q Consensus        84 ~~~~~d~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~  162 (352)
                      .++++|.  .+ .....+.....  ...........++..+++++...  .....++.+|..+++...+.....   ...
T Consensus        63 ~i~~~d~--~~~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~---~~~  133 (297)
T 2ojh_A           63 LLYRLSL--AGDPSPEKVDTGFA--TICNNDHGISPDGALYAISDKVE--FGKSAIYLLPSTGGTPRLMTKNLP---SYW  133 (297)
T ss_dssp             EEEEEES--SSCCSCEECCCTTC--CCBCSCCEECTTSSEEEEEECTT--TSSCEEEEEETTCCCCEECCSSSS---EEE
T ss_pred             eEEEEeC--CCCCCceEeccccc--cccccceEECCCCCEEEEEEeCC--CCcceEEEEECCCCceEEeecCCC---ccc
Confidence            5777788  77 66555543221  01111122223455445544221  135788999988777555543322   112


Q ss_pred             eEEE-CC-EEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCcee
Q 045821          163 CGVL-NQ-KIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWL  240 (352)
Q Consensus       163 ~~~~-~~-~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~  240 (352)
                      .+.. ++ .+++.++.+....++.+|..+.....+..... ........-+++..++++..  .....++.++.......
T Consensus       134 ~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~--~~~~~i~~~~~~~~~~~  210 (297)
T 2ojh_A          134 HGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG-RNDGPDYSPDGRWIYFNSSR--TGQMQIWRVRVDGSSVE  210 (297)
T ss_dssp             EEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS-CEEEEEECTTSSEEEEEECT--TSSCEEEEEETTSSCEE
T ss_pred             eEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCC-ccccceECCCCCEEEEEecC--CCCccEEEECCCCCCcE
Confidence            2222 34 45545543322456777787777666543221 11111222256544433322  12347888887777776


Q ss_pred             ecCCCCCCCCCCcEEEECCEEEEEecCCC----------CeEEEEeCCCCceEEccC
Q 045821          241 HADANMASGWRGPAVVVDDALYVLDQSSG----------TKLMMWQKESREWSPVGR  287 (352)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~l~~~gg~~~----------~~v~~yd~~~~~W~~~~~  287 (352)
                      .+..... ........-+++.+++++..+          ..+++||..+++...+..
T Consensus       211 ~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~  266 (297)
T 2ojh_A          211 RITDSAY-GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD  266 (297)
T ss_dssp             ECCCCSE-EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE
T ss_pred             EEecCCc-ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec
Confidence            6643210 000111222555444433221          369999999887766543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=96.58  E-value=0.21  Score=43.40  Aligned_cols=150  Identities=9%  Similarity=0.020  Sum_probs=70.7

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE-CCEEEEEeCCCC---CCceEEEeCCCCc---
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGD---THSWDVYDPRTNN---  191 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~---~~~v~~yd~~t~~---  191 (352)
                      ++..++.++.      ...+.+||..+++-...-....+  -..++.. ++..++.++.+.   ...+.+||..+..   
T Consensus        85 ~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~  156 (369)
T 3zwl_B           85 FTKYCVTGSA------DYSIKLWDVSNGQCVATWKSPVP--VKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATH  156 (369)
T ss_dssp             TSSEEEEEET------TTEEEEEETTTCCEEEEEECSSC--EEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTC
T ss_pred             CCCEEEEEeC------CCeEEEEECCCCcEEEEeecCCC--eEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccce
Confidence            4555566653      34688899887764332222211  1111121 445555544331   1466777766442   


Q ss_pred             -EEEecCCCCc-----cc--ceeEE--EECCEEEEEccCCCCCCceEEEEEeCCC-Ccee-ecCCCCCCCCCCcEEEECC
Q 045821          192 -WKLHTEPNIF-----TE--IEDSF--VMDGKIYIRCSASAATSHVCALVYEPST-DSWL-HADANMASGWRGPAVVVDD  259 (352)
Q Consensus       192 -W~~~~~~~~~-----~~--~~~~~--~~~g~iyv~GG~~~~~~~~~i~~yd~~~-~~W~-~~~~~~~~~~~~~~~~~~~  259 (352)
                       +......+..     ..  ....+  .-+++.++.|+.++     .+..||..+ .+-. .+.. ...........-++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~  230 (369)
T 3zwl_B          157 ELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDG-----KISKYDVSNNYEYVDSIDL-HEKSISDMQFSPDL  230 (369)
T ss_dssp             CEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTS-----EEEEEETTTTTEEEEEEEC-CSSCEEEEEECTTS
T ss_pred             eecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCC-----EEEEEECCCCcEeEEEEec-CCCceeEEEECCCC
Confidence             2221111100     00  11112  22566666655442     588899876 3322 2211 11111111122266


Q ss_pred             EEEEEecCCCCeEEEEeCCCCceE
Q 045821          260 ALYVLDQSSGTKLMMWQKESREWS  283 (352)
Q Consensus       260 ~l~~~gg~~~~~v~~yd~~~~~W~  283 (352)
                      ..++.++.++ .+.+||..+.+..
T Consensus       231 ~~l~~~~~d~-~i~v~d~~~~~~~  253 (369)
T 3zwl_B          231 TYFITSSRDT-NSFLVDVSTLQVL  253 (369)
T ss_dssp             SEEEEEETTS-EEEEEETTTCCEE
T ss_pred             CEEEEecCCc-eEEEEECCCCcee
Confidence            6677776665 8999999876644

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=96.57  E-value=0.078  Score=47.76  Aligned_cols=146  Identities=10%  Similarity=0.039  Sum_probs=77.0

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEE-ECCEEEEEeCCCCCCceEEEeCCCCcEEEecC
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGV-LNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTE  197 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~  197 (352)
                      ++.+++.|+.+      ..+.+||..+++....-....... .+++. -++.+++.|+.+  ..+.+||..+..-..  .
T Consensus       119 ~~~~l~s~s~D------g~i~vwd~~~~~~~~~l~~h~~~V-~~v~~~~~~~~l~sgs~D--~~i~iwd~~~~~~~~--~  187 (410)
T 1vyh_C          119 VFSVMVSASED------ATIKVWDYETGDFERTLKGHTDSV-QDISFDHSGKLLASCSAD--MTIKLWDFQGFECIR--T  187 (410)
T ss_dssp             SSSEEEEEESS------SCEEEEETTTCCCCEEECCCSSCE-EEEEECTTSSEEEEEETT--SCCCEEETTSSCEEE--C
T ss_pred             CCCEEEEEeCC------CeEEEEECCCCcEEEEEeccCCcE-EEEEEcCCCCEEEEEeCC--CeEEEEeCCCCceeE--E
Confidence            34566666543      457888988775332111111111 11222 256777777766  677888887765322  2


Q ss_pred             CCCcccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEE--EECCEEEEEecCCCCeEE
Q 045821          198 PNIFTEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAV--VVDDALYVLDQSSGTKLM  273 (352)
Q Consensus       198 ~~~~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~--~~~~~l~~~gg~~~~~v~  273 (352)
                      +........++.+  ++..++.|+.++     .+..||..+..-...-.  .+......+  ..++.+++.|+.++ .+.
T Consensus       188 ~~~h~~~V~~v~~~p~~~~l~s~s~D~-----~i~~wd~~~~~~~~~~~--~h~~~v~~~~~~~~g~~l~s~s~D~-~v~  259 (410)
T 1vyh_C          188 MHGHDHNVSSVSIMPNGDHIVSASRDK-----TIKMWEVQTGYCVKTFT--GHREWVRMVRPNQDGTLIASCSNDQ-TVR  259 (410)
T ss_dssp             CCCCSSCEEEEEECSSSSEEEEEETTS-----EEEEEETTTCCEEEEEE--CCSSCEEEEEECTTSSEEEEEETTS-CEE
T ss_pred             EcCCCCCEEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEe--CCCccEEEEEECCCCCEEEEEcCCC-eEE
Confidence            2221111222222  566667766553     57888887765432111  011001112  23567777777666 899


Q ss_pred             EEeCCCCceE
Q 045821          274 MWQKESREWS  283 (352)
Q Consensus       274 ~yd~~~~~W~  283 (352)
                      +||..+....
T Consensus       260 vwd~~~~~~~  269 (410)
T 1vyh_C          260 VWVVATKECK  269 (410)
T ss_dssp             EEETTTCCEE
T ss_pred             EEECCCCcee
Confidence            9999876643

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=96.57  E-value=0.24  Score=42.29  Aligned_cols=185  Identities=9%  Similarity=0.050  Sum_probs=88.7

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeE-ecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEec
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWT-DAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHT  196 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~-~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~  196 (352)
                      ++..++.|+.      ...+.+||..+++-. .+.....  .-.+++.. ++.+++.|+.+  ..+.+||..++. ....
T Consensus        66 ~~~~l~s~s~------d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~sgs~D--~~v~lWd~~~~~-~~~~  134 (304)
T 2ynn_A           66 RKNWIIVGSD------DFRIRVFNYNTGEKVVDFEAHPD--YIRSIAVHPTKPYVLSGSDD--LTVKLWNWENNW-ALEQ  134 (304)
T ss_dssp             GGTEEEEEET------TSEEEEEETTTCCEEEEEECCSS--CEEEEEECSSSSEEEEEETT--SCEEEEEGGGTT-EEEE
T ss_pred             CCCEEEEECC------CCEEEEEECCCCcEEEEEeCCCC--cEEEEEEcCCCCEEEEECCC--CeEEEEECCCCc-chhh
Confidence            4455556653      356888898876532 2211111  11122222 45666666655  678889887652 1111


Q ss_pred             CCCCcccceeEEEE---CCEEEEEccCCCCCCceEEEEEeCCCCce--eecCCCCCCCCCCcEEEE----CCEEEEEecC
Q 045821          197 EPNIFTEIEDSFVM---DGKIYIRCSASAATSHVCALVYEPSTDSW--LHADANMASGWRGPAVVV----DDALYVLDQS  267 (352)
Q Consensus       197 ~~~~~~~~~~~~~~---~g~iyv~GG~~~~~~~~~i~~yd~~~~~W--~~~~~~~~~~~~~~~~~~----~~~l~~~gg~  267 (352)
                      .+........++.+   ++.+++.|+.++     .+..||..+..-  .....   .......+..    ++.+++.|+.
T Consensus       135 ~~~~h~~~v~~v~~~p~~~~~l~sgs~D~-----~v~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~s~s~  206 (304)
T 2ynn_A          135 TFEGHEHFVMCVAFNPKDPSTFASGCLDR-----TVKVWSLGQSTPNFTLTTG---QERGVNYVDYYPLPDKPYMITASD  206 (304)
T ss_dssp             EECCCCSCEEEEEECTTCTTEEEEEETTS-----EEEEEETTCSSCSEEEECC---CTTCEEEEEECCSTTCCEEEEEET
T ss_pred             hhcccCCcEEEEEECCCCCCEEEEEeCCC-----eEEEEECCCCCccceeccC---CcCcEEEEEEEEcCCCCEEEEEcC
Confidence            11111111122222   456777766553     577788754321  11110   0001111211    4566677776


Q ss_pred             CCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEcCCce-EEEEEcCCccc
Q 045821          268 SGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCS-AVVIDVGNIGN  325 (352)
Q Consensus       268 ~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~-~~~~d~~~~~w  325 (352)
                      ++ .+.+||..+.+-..  .+........+.....++.+++-|+.+. +.++|+++..-
T Consensus       207 D~-~i~iWd~~~~~~~~--~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~  262 (304)
T 2ynn_A          207 DL-TIKIWDYQTKSCVA--TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV  262 (304)
T ss_dssp             TS-EEEEEETTTTEEEE--EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred             CC-eEEEEeCCCCccce--eeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce
Confidence            66 89999998765322  1111000111112223455666666554 56899876543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=96.56  E-value=0.12  Score=45.75  Aligned_cols=175  Identities=6%  Similarity=0.001  Sum_probs=90.9

Q ss_pred             CeEEEEECCCCeeEecCCCC-CcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCccc--ceeEEEE
Q 045821          136 SEVYCYDASMNTWTDAAPMS-TARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTE--IEDSFVM  210 (352)
Q Consensus       136 ~~~~~~d~~t~~W~~~~~~~-~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~--~~~~~~~  210 (352)
                      ..+.+||..+.+........ ....-.+++..  ++..++.++.+  ..+.+||..+.....+........  ...+..-
T Consensus        96 g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~  173 (383)
T 3ei3_B           96 GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR--GATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSV  173 (383)
T ss_dssp             SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT--TEEEEEETTSCEEEEEECCCCSSCCEEEEEEET
T ss_pred             CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC--CEEEEEECCCCceEEEeccCCCCCCeEEEEECC
Confidence            45788888877655443321 11111222222  34666666655  678899999877666543222111  1122233


Q ss_pred             CCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEE--ECCE-EEEEecCCCCeEEEEeCCC----CceE
Q 045821          211 DGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVV--VDDA-LYVLDQSSGTKLMMWQKES----REWS  283 (352)
Q Consensus       211 ~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~--~~~~-l~~~gg~~~~~v~~yd~~~----~~W~  283 (352)
                      ++++++.|+.++     .+..||.....-..+..   +......+.  -+++ +++.|+.++ .+.+||..+    ....
T Consensus       174 ~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~---h~~~v~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~  244 (383)
T 3ei3_B          174 SRQMLATGDSTG-----RLLLLGLDGHEIFKEKL---HKAKVTHAEFNPRCDWLMATSSVDA-TVKLWDLRNIKDKNSYI  244 (383)
T ss_dssp             TTTEEEEEETTS-----EEEEEETTSCEEEEEEC---SSSCEEEEEECSSCTTEEEEEETTS-EEEEEEGGGCCSTTCEE
T ss_pred             CCCEEEEECCCC-----CEEEEECCCCEEEEecc---CCCcEEEEEECCCCCCEEEEEeCCC-EEEEEeCCCCCcccceE
Confidence            667777765542     68888885443333321   111111122  2454 777777666 899999986    3332


Q ss_pred             EccCCCCCcCCCCceEEE-e-CCEEEEEcCCc-eEEEEEcCCccc
Q 045821          284 PVGRLSTLLTRPPCKLVA-I-GKTIFVIGKGC-SAVVIDVGNIGN  325 (352)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~-~-~~~i~v~gG~~-~~~~~d~~~~~w  325 (352)
                      ..-..    .....++.. . +++.++.|+.+ .+.+||+.+..-
T Consensus       245 ~~~~~----~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~  285 (383)
T 3ei3_B          245 AEMPH----EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK  285 (383)
T ss_dssp             EEEEC----SSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred             EEecC----CCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence            22111    111122222 2 45666666554 566899876553

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=96.55  E-value=0.29  Score=41.35  Aligned_cols=144  Identities=10%  Similarity=0.048  Sum_probs=66.8

Q ss_pred             CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE-CCEEEEEccCCCCCCceEEEEEeCCCCceeecCCC
Q 045821          167 NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM-DGKIYIRCSASAATSHVCALVYEPSTDSWLHADAN  245 (352)
Q Consensus       167 ~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~  245 (352)
                      ++..++.|+.+  ..+.+||........ .. ...........- ++..++.|+.++     .+..||.... -..+...
T Consensus       113 ~~~~l~~~~~d--~~i~~~d~~~~~~~~-~~-~~~~v~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~-~~~~~~~  182 (313)
T 3odt_A          113 QDGVVISGSWD--KTAKVWKEGSLVYNL-QA-HNASVWDAKVVSFSENKFLTASADK-----TIKLWQNDKV-IKTFSGI  182 (313)
T ss_dssp             ETTEEEEEETT--SEEEEEETTEEEEEE-EC-CSSCEEEEEEEETTTTEEEEEETTS-----CEEEEETTEE-EEEECSS
T ss_pred             cCCEEEEEeCC--CCEEEEcCCcEEEec-cc-CCCceeEEEEccCCCCEEEEEECCC-----CEEEEecCce-EEEEecc
Confidence            55556666655  678888833222221 11 111111112222 566666655543     4677773222 1222211


Q ss_pred             CCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEe-CCEEEEEcCCceEEEEEcCCcc
Q 045821          246 MASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAI-GKTIFVIGKGCSAVVIDVGNIG  324 (352)
Q Consensus       246 ~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~i~v~gG~~~~~~~d~~~~~  324 (352)
                      ............++. ++.|+.++ .+.+||..+.+-...-...   .....++... +++|+..+....+.+||+++..
T Consensus       183 ~~~~i~~~~~~~~~~-~~~~~~dg-~i~i~d~~~~~~~~~~~~~---~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~  257 (313)
T 3odt_A          183 HNDVVRHLAVVDDGH-FISCSNDG-LIKLVDMHTGDVLRTYEGH---ESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGS  257 (313)
T ss_dssp             CSSCEEEEEEEETTE-EEEEETTS-EEEEEETTTCCEEEEEECC---SSCEEEEEECTTSCEEEEETTSEEEEECTTTCC
T ss_pred             CcccEEEEEEcCCCe-EEEccCCC-eEEEEECCchhhhhhhhcC---CceEEEEEEecCCCEEEEecCCEEEEEECCCCc
Confidence            111111222345777 66666655 8999999876533221111   1111223222 4454444434456689887765


Q ss_pred             c
Q 045821          325 N  325 (352)
Q Consensus       325 w  325 (352)
                      .
T Consensus       258 ~  258 (313)
T 3odt_A          258 L  258 (313)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=96.53  E-value=0.095  Score=44.60  Aligned_cols=187  Identities=7%  Similarity=0.016  Sum_probs=98.0

Q ss_pred             CEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecCC
Q 045821          120 KNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEP  198 (352)
Q Consensus       120 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~  198 (352)
                      +.+|+.+..      ...+++||+.++ .+.+.. +.. ...+++.- ++++|+.....  ..+.+||+.+++.+.+...
T Consensus        40 ~~l~~~~~~------~~~i~~~~~~~~-~~~~~~-~~~-~~~~l~~~~dg~l~v~~~~~--~~i~~~d~~~g~~~~~~~~  108 (296)
T 3e5z_A           40 SAVIFSDVR------QNRTWAWSDDGQ-LSPEMH-PSH-HQNGHCLNKQGHLIACSHGL--RRLERQREPGGEWESIADS  108 (296)
T ss_dssp             TEEEEEEGG------GTEEEEEETTSC-EEEEES-SCS-SEEEEEECTTCCEEEEETTT--TEEEEECSTTCCEEEEECE
T ss_pred             CEEEEEeCC------CCEEEEEECCCC-eEEEEC-CCC-CcceeeECCCCcEEEEecCC--CeEEEEcCCCCcEEEEeec
Confidence            347777642      346899999987 554432 111 11223322 67888766422  5789999988888766432


Q ss_pred             CCccc----ceeEEEECCEEEEE----ccCC--------CCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEE
Q 045821          199 NIFTE----IEDSFVMDGKIYIR----CSAS--------AATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALY  262 (352)
Q Consensus       199 ~~~~~----~~~~~~~~g~iyv~----GG~~--------~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~  262 (352)
                      .....    ...++.-+|++|+.    |...        .......++.+|+. ++...+....... .+.++.-+++++
T Consensus       109 ~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~-~gi~~s~dg~~l  186 (296)
T 3e5z_A          109 FEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKP-NGLAFLPSGNLL  186 (296)
T ss_dssp             ETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSE-EEEEECTTSCEE
T ss_pred             cCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCC-ccEEECCCCCEE
Confidence            11111    11223337899996    3311        00112378999887 5555443211110 111222367766


Q ss_pred             EEecCCCCeEEEEeCC-CCce-EEccCCCCCcCCCCceEEE-eCCEEEEEcCCceEEEEEcCC
Q 045821          263 VLDQSSGTKLMMWQKE-SREW-SPVGRLSTLLTRPPCKLVA-IGKTIFVIGKGCSAVVIDVGN  322 (352)
Q Consensus       263 ~~gg~~~~~v~~yd~~-~~~W-~~~~~~~~~~~~~~~~~~~-~~~~i~v~gG~~~~~~~d~~~  322 (352)
                       +.+.....+++||+. +++. .....+.. ......+++. -++.||+.. ...+.+||++.
T Consensus       187 -v~~~~~~~i~~~~~~~~g~~~~~~~~~~~-~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~g  246 (296)
T 3e5z_A          187 -VSDTGDNATHRYCLNARGETEYQGVHFTV-EPGKTDGLRVDAGGLIWASA-GDGVHVLTPDG  246 (296)
T ss_dssp             -EEETTTTEEEEEEECSSSCEEEEEEEECC-SSSCCCSEEEBTTSCEEEEE-TTEEEEECTTS
T ss_pred             -EEeCCCCeEEEEEECCCCcCcCCCeEeeC-CCCCCCeEEECCCCCEEEEc-CCeEEEECCCC
Confidence             444444489999986 5555 21111110 0111112332 367788877 55677888863

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=96.48  E-value=0.15  Score=44.84  Aligned_cols=137  Identities=12%  Similarity=0.108  Sum_probs=70.8

Q ss_pred             CCeEEEEECCCCeeEe-cCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE--
Q 045821          135 TSEVYCYDASMNTWTD-AAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM--  210 (352)
Q Consensus       135 ~~~~~~~d~~t~~W~~-~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~--  210 (352)
                      ...+.+||..+++-.. +.....+-........ ++..++.|+.+  ..+.+||..+.+....-..  ......++.+  
T Consensus       175 D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~D--g~v~~wd~~~~~~~~~~~~--h~~~v~~v~~~p  250 (354)
T 2pbi_B          175 DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCD--KKAMVWDMRSGQCVQAFET--HESDVNSVRYYP  250 (354)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETT--SCEEEEETTTCCEEEEECC--CSSCEEEEEECT
T ss_pred             CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCC--CeEEEEECCCCcEEEEecC--CCCCeEEEEEeC
Confidence            3568888988775322 2111111111111111 34677777766  6889999998875433211  1111112222  


Q ss_pred             CCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEE--EECCEEEEEecCCCCeEEEEeCCCCc
Q 045821          211 DGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAV--VVDDALYVLDQSSGTKLMMWQKESRE  281 (352)
Q Consensus       211 ~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~--~~~~~l~~~gg~~~~~v~~yd~~~~~  281 (352)
                      ++.+++.|+.++     .+..||..++.-..+-...........+  ..++.+++.|+.++ .+.+||..+++
T Consensus       251 ~~~~l~s~s~D~-----~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~-~i~vwd~~~~~  317 (354)
T 2pbi_B          251 SGDAFASGSDDA-----TCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDY-TINVWDVLKGS  317 (354)
T ss_dssp             TSSEEEEEETTS-----CEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS-CEEEEETTTCS
T ss_pred             CCCEEEEEeCCC-----eEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCC-cEEEEECCCCc
Confidence            567777766553     4778888766432221111111111122  23677777777665 89999987654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=96.44  E-value=0.19  Score=48.55  Aligned_cols=187  Identities=11%  Similarity=0.034  Sum_probs=93.2

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEe-cCCCCCcceeeeeEE-ECCEEEEEeCCCCCCceEEEeCCCCcEEEec
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTD-AAPMSTARCYFPCGV-LNQKIYCIGGLGDTHSWDVYDPRTNNWKLHT  196 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~-~~~~~~~r~~~~~~~-~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~  196 (352)
                      ++.+++.|+.      ...+.+||..+++-.. +..... .. .+++. -++..++.|+.+  ..+.+||.....=..+.
T Consensus       441 ~g~~l~sgs~------Dg~v~vwd~~~~~~~~~~~~h~~-~v-~~~~~s~~~~~l~s~s~D--~~i~iwd~~~~~~~~~~  510 (694)
T 3dm0_A          441 DGQFALSGSW------DGELRLWDLAAGVSTRRFVGHTK-DV-LSVAFSLDNRQIVSASRD--RTIKLWNTLGECKYTIS  510 (694)
T ss_dssp             TSSEEEEEET------TSEEEEEETTTTEEEEEEECCSS-CE-EEEEECTTSSCEEEEETT--SCEEEECTTSCEEEEEC
T ss_pred             CCCEEEEEeC------CCcEEEEECCCCcceeEEeCCCC-CE-EEEEEeCCCCEEEEEeCC--CEEEEEECCCCcceeec
Confidence            4566666654      3468889988775322 111111 11 11121 255666666655  67888887655322332


Q ss_pred             CCCCcccc-eeEEEE--CC--EEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCe
Q 045821          197 EPNIFTEI-EDSFVM--DG--KIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTK  271 (352)
Q Consensus       197 ~~~~~~~~-~~~~~~--~g--~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~  271 (352)
                      .....+.. ..++.+  ++  .+++.|+.++     .+..||..+.+-...-...........+..++++++.|+.++ .
T Consensus       511 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~-----~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg-~  584 (694)
T 3dm0_A          511 EGGEGHRDWVSCVRFSPNTLQPTIVSASWDK-----TVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDG-V  584 (694)
T ss_dssp             SSTTSCSSCEEEEEECSCSSSCEEEEEETTS-----CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS-B
T ss_pred             cCCCCCCCcEEEEEEeCCCCcceEEEEeCCC-----eEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC-e
Confidence            22122221 122222  22  3555555442     477888876654322111110000111223677788887766 8


Q ss_pred             EEEEeCCCCceEEccCCCCCcCCCCceEE-EeCCEEEEEcCCceEEEEEcCCccc
Q 045821          272 LMMWQKESREWSPVGRLSTLLTRPPCKLV-AIGKTIFVIGKGCSAVVIDVGNIGN  325 (352)
Q Consensus       272 v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~i~v~gG~~~~~~~d~~~~~w  325 (352)
                      +.+||..+.+-.  ..+...  ....+++ ..++.+++.+....+.++|+++..-
T Consensus       585 i~iwd~~~~~~~--~~~~~~--~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~  635 (694)
T 3dm0_A          585 VLLWDLAEGKKL--YSLEAN--SVIHALCFSPNRYWLCAATEHGIKIWDLESKSI  635 (694)
T ss_dssp             CEEEETTTTEEE--ECCBCS--SCEEEEEECSSSSEEEEEETTEEEEEETTTTEE
T ss_pred             EEEEECCCCceE--EEecCC--CcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCC
Confidence            999999876532  222211  1112222 2345555556555677899887543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=96.44  E-value=0.11  Score=45.05  Aligned_cols=190  Identities=11%  Similarity=0.074  Sum_probs=98.1

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE-CCEEEEEeCCCC--CCceEEEeCCCCcEEEe
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGD--THSWDVYDPRTNNWKLH  195 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~--~~~v~~yd~~t~~W~~~  195 (352)
                      ++.+|+.+..      ...+++||+.+++...+.... ...-.+++.- ++++|+......  ...+.+||+.+...+.+
T Consensus        55 ~g~l~~~~~~------~~~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~  127 (333)
T 2dg1_A           55 QGQLFLLDVF------EGNIFKINPETKEIKRPFVSH-KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDI  127 (333)
T ss_dssp             TSCEEEEETT------TCEEEEECTTTCCEEEEEECS-SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEE
T ss_pred             CCCEEEEECC------CCEEEEEeCCCCcEEEEeeCC-CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEE
Confidence            5678877642      357899999988876543111 1112223332 678888764321  14789999998876533


Q ss_pred             -cCCCCcccceeEEE-ECCEEEEEccCC-CCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEE--ECC-EEEEEecCCC
Q 045821          196 -TEPNIFTEIEDSFV-MDGKIYIRCSAS-AATSHVCALVYEPSTDSWLHADANMASGWRGPAVV--VDD-ALYVLDQSSG  269 (352)
Q Consensus       196 -~~~~~~~~~~~~~~-~~g~iyv~GG~~-~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~--~~~-~l~~~gg~~~  269 (352)
                       ............+. -+|++|+..... .......++++|+.+.+...+.....   ....+.  -++ .||+.....+
T Consensus       128 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~i~~~~dg~~l~v~~~~~~  204 (333)
T 2dg1_A          128 IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNIS---VANGIALSTDEKVLWVTETTAN  204 (333)
T ss_dssp             ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEES---SEEEEEECTTSSEEEEEEGGGT
T ss_pred             EccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCC---cccceEECCCCCEEEEEeCCCC
Confidence             21111111112222 268888864221 11123479999988776665422110   111222  244 4777654333


Q ss_pred             CeEEEEeCCC--CceEEcc-----CCCCCcCCCCceEEE-eCCEEEEEc-CCceEEEEEcC
Q 045821          270 TKLMMWQKES--REWSPVG-----RLSTLLTRPPCKLVA-IGKTIFVIG-KGCSAVVIDVG  321 (352)
Q Consensus       270 ~~v~~yd~~~--~~W~~~~-----~~~~~~~~~~~~~~~-~~~~i~v~g-G~~~~~~~d~~  321 (352)
                       .+++||+.+  .....+.     ..+..  ....+++. -++.||+.. +...+.+||++
T Consensus       205 -~i~~~d~~~~g~~~~~~~~~~~~~~~~~--~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          205 -RLHRIALEDDGVTIQPFGATIPYYFTGH--EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             -EEEEEEECTTSSSEEEEEEEEEEECCSS--SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             -eEEEEEecCCCcCcccccceEEEecCCC--CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence             899999854  2333221     11110  01112222 256787765 33457778874

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=96.43  E-value=0.15  Score=43.46  Aligned_cols=233  Identities=10%  Similarity=0.026  Sum_probs=113.8

Q ss_pred             CCEEEEEEe---cCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-C-CEEEEEeCCCCCCCCCCeEEEEE
Q 045821           68 ETWIYAFCR---DNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-G-KNAYLLGGCGWSEDATSEVYCYD  142 (352)
Q Consensus        68 ~~~l~~~gg---~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~d  142 (352)
                      ++.+|+...   .+....-.++.||+  .++.+..+...........-..++.. + +.+|+...       ...+++||
T Consensus        28 ~g~l~~~~~~~~~~~~~~~~i~~~d~--~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-------~~~l~~~d   98 (314)
T 1pjx_A           28 NGDFYIVAPEVEVNGKPAGEILRIDL--KTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-------RLGLLVVQ   98 (314)
T ss_dssp             TSCEEEEETTCEETTEECCEEEEECT--TTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-------TTEEEEEE
T ss_pred             CCCEEEEEeccccCCCCCCEEEEEeC--CCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-------CCCEEEEe
Confidence            567887710   00011235777898  88887765431000000111233332 4 78888754       13689999


Q ss_pred             CCCCeeEec-CCCCC--cce-eeeeEEE-CCEEEEEeCCCC-------------CCceEEEeCCCCcEEEecCCCCcccc
Q 045821          143 ASMNTWTDA-APMST--ARC-YFPCGVL-NQKIYCIGGLGD-------------THSWDVYDPRTNNWKLHTEPNIFTEI  204 (352)
Q Consensus       143 ~~t~~W~~~-~~~~~--~r~-~~~~~~~-~~~iyv~gG~~~-------------~~~v~~yd~~t~~W~~~~~~~~~~~~  204 (352)
                      +. ++...+ .....  +.. ...++.. ++++|+......             ...+++||+. .+...+....  ...
T Consensus        99 ~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~--~~~  174 (314)
T 1pjx_A           99 TD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAF--QFP  174 (314)
T ss_dssp             TT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEE--SSE
T ss_pred             CC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCC--CCc
Confidence            98 776655 32211  111 1223322 578888764320             1468889887 5555442110  111


Q ss_pred             eeEEEE-----CC-EEEEEccCCCCCCceEEEEEeCC-CCce------eecCCCCCCCCCCcEEE--ECCEEEEEecCCC
Q 045821          205 EDSFVM-----DG-KIYIRCSASAATSHVCALVYEPS-TDSW------LHADANMASGWRGPAVV--VDDALYVLDQSSG  269 (352)
Q Consensus       205 ~~~~~~-----~g-~iyv~GG~~~~~~~~~i~~yd~~-~~~W------~~~~~~~~~~~~~~~~~--~~~~l~~~gg~~~  269 (352)
                      ...+..     ++ .||+.....     ..+++||.. +++.      ..++....  .....+.  -+|.||+.....+
T Consensus       175 ~~i~~~~~~d~dg~~l~v~~~~~-----~~i~~~~~~~~g~~~~~~~~~~~~~~~~--~~p~~i~~d~~G~l~v~~~~~~  247 (314)
T 1pjx_A          175 NGIAVRHMNDGRPYQLIVAETPT-----KKLWSYDIKGPAKIENKKVWGHIPGTHE--GGADGMDFDEDNNLLVANWGSS  247 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTT-----TEEEEEEEEETTEEEEEEEEEECCCCSS--CEEEEEEEBTTCCEEEEEETTT
T ss_pred             ceEEEecccCCCCCEEEEEECCC-----CeEEEEECCCCCccccceEEEECCCCCC--CCCCceEECCCCCEEEEEcCCC
Confidence            222322     44 577774222     257888865 3433      22221100  1111222  3677887753333


Q ss_pred             CeEEEEeCCCCceEEccCCCCCcCCCCceEEE-eCCE-EEEEcCC-ceEEEEEcCCcc
Q 045821          270 TKLMMWQKESREWSPVGRLSTLLTRPPCKLVA-IGKT-IFVIGKG-CSAVVIDVGNIG  324 (352)
Q Consensus       270 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~-i~v~gG~-~~~~~~d~~~~~  324 (352)
                       .|.+||+++++....-..+.   ....+++. .+++ ||+-... ..++.||++...
T Consensus       248 -~i~~~d~~~g~~~~~~~~~~---~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g  301 (314)
T 1pjx_A          248 -HIEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             -EEEEECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             -EEEEEcCCCCcEeEEEeCCC---CCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence             89999998544322212221   11223332 2444 8876543 367778887643

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=96.43  E-value=0.33  Score=40.55  Aligned_cols=186  Identities=9%  Similarity=-0.014  Sum_probs=102.7

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCcEEEec
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNNWKLHT  196 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~  196 (352)
                      ++.||+...      ....++++|+....-..+..... ...+.++.-  ++.+|+.....  ..+.++|+....-+.+.
T Consensus        47 ~~~ly~~d~------~~~~I~~~~~~g~~~~~~~~~~~-~~p~~ia~d~~~~~lyv~d~~~--~~I~~~~~~g~~~~~~~  117 (267)
T 1npe_A           47 DKVVYWTDI------SEPSIGRASLHGGEPTTIIRQDL-GSPEGIALDHLGRTIFWTDSQL--DRIEVAKMDGTQRRVLF  117 (267)
T ss_dssp             TTEEEEEET------TTTEEEEEESSSCCCEEEECTTC-CCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSCEEEE
T ss_pred             CCEEEEEEC------CCCEEEEEecCCCCcEEEEECCC-CCccEEEEEecCCeEEEEECCC--CEEEEEEcCCCCEEEEE
Confidence            578998853      24678999998764333221111 122334443  57999987543  67889998765433332


Q ss_pred             CCCCcccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEE---CCEEEEEecCCCCe
Q 045821          197 EPNIFTEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVV---DDALYVLDQSSGTK  271 (352)
Q Consensus       197 ~~~~~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~l~~~gg~~~~~  271 (352)
                      ... ...-...++.  +++||+.....   ....++++++....-+.+...  .......+.+   ++.||+.....+ .
T Consensus       118 ~~~-~~~P~~i~vd~~~g~lyv~~~~~---~~~~I~~~~~dg~~~~~~~~~--~~~~P~gia~d~~~~~lyv~d~~~~-~  190 (267)
T 1npe_A          118 DTG-LVNPRGIVTDPVRGNLYWTDWNR---DNPKIETSHMDGTNRRILAQD--NLGLPNGLTFDAFSSQLCWVDAGTH-R  190 (267)
T ss_dssp             CSS-CSSEEEEEEETTTTEEEEEECCS---SSCEEEEEETTSCCCEEEECT--TCSCEEEEEEETTTTEEEEEETTTT-E
T ss_pred             ECC-CCCccEEEEeeCCCEEEEEECCC---CCcEEEEEecCCCCcEEEEEC--CCCCCcEEEEcCCCCEEEEEECCCC-E
Confidence            211 1111233333  68999984221   123678888754433332211  1111122322   568888876544 8


Q ss_pred             EEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEc-CCceEEEEEcCCcc
Q 045821          272 LMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIG-KGCSAVVIDVGNIG  324 (352)
Q Consensus       272 v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~g-G~~~~~~~d~~~~~  324 (352)
                      |.++|+++..-..+...    ...-.+++..++.||+.. +...+..+|++...
T Consensus       191 I~~~~~~g~~~~~~~~~----~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~  240 (267)
T 1npe_A          191 AECLNPAQPGRRKVLEG----LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISK  240 (267)
T ss_dssp             EEEEETTEEEEEEEEEC----CCSEEEEEEETTEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEEecCCCceEEEecC----CCCceEEEEeCCEEEEEECCCCeEEEEeCCCCC
Confidence            99999986443322211    112245666789999876 44567789987543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=96.42  E-value=0.29  Score=41.87  Aligned_cols=236  Identities=14%  Similarity=0.046  Sum_probs=106.8

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcc-cCCcceEEEEE-C-CEEEEEeCC---CCCCC--CCCeEE
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPART-LRRKGMGFEVL-G-KNAYLLGGC---GWSED--ATSEVY  139 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~-~-~~iyv~GG~---~~~~~--~~~~~~  139 (352)
                      +..+|+.+..    ...++.+|.  .+......-..+... ....-..++.. + +.+|+....   .....  ....+.
T Consensus        45 g~~l~v~~~~----~~~v~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~  118 (337)
T 1pby_B           45 GRIAYATVNK----SESLVKIDL--VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA  118 (337)
T ss_dssp             SSEEEEEETT----TTEEEEEET--TTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEE
T ss_pred             CCEEEEEeCC----CCeEEEEEC--CCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEE
Confidence            4567776532    234677788  776644322222100 00011122222 3 467776411   00000  247899


Q ss_pred             EEECCCCeeEecCCCCCcceeeeeEEE-CC-EEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECC-EEEE
Q 045821          140 CYDASMNTWTDAAPMSTARCYFPCGVL-NQ-KIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDG-KIYI  216 (352)
Q Consensus       140 ~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g-~iyv  216 (352)
                      +||..+.+....-...  .....++.. ++ .+|+.+     ..+.+||..+.+-...-+...... .....-++ .+|+
T Consensus       119 v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~  190 (337)
T 1pby_B          119 LYDAETLSRRKAFEAP--RQITMLAWARDGSKLYGLG-----RDLHVMDPEAGTLVEDKPIQSWEA-ETYAQPDVLAVWN  190 (337)
T ss_dssp             EEETTTTEEEEEEECC--SSCCCEEECTTSSCEEEES-----SSEEEEETTTTEEEEEECSTTTTT-TTBCCCBCCCCCC
T ss_pred             EEECCCCcEEEEEeCC--CCcceeEECCCCCEEEEeC-----CeEEEEECCCCcEeeeeeccccCC-CceeCCCccEEee
Confidence            9999887654321111  111222222 44 466662     578999998876433221111000 00111122 2332


Q ss_pred             EccCC------------CC------CCceEEEEEeCCCCceeecCCCCCCCCCC--cEEEECC-EEEEEecCCCCeEEEE
Q 045821          217 RCSAS------------AA------TSHVCALVYEPSTDSWLHADANMASGWRG--PAVVVDD-ALYVLDQSSGTKLMMW  275 (352)
Q Consensus       217 ~GG~~------------~~------~~~~~i~~yd~~~~~W~~~~~~~~~~~~~--~~~~~~~-~l~~~gg~~~~~v~~y  275 (352)
                      .+...            ..      .....+..+|+.+.+-..+... ......  ..+.-++ .+|+..    ..+.+|
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~----~~v~~~  265 (337)
T 1pby_B          191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR-IMDVFYFSTAVNPAKTRAFGAY----NVLESF  265 (337)
T ss_dssp             CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE-ECSSCEEEEEECTTSSEEEEEE----SEEEEE
T ss_pred             eccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecC-CCCCceeeEEECCCCCEEEEeC----CeEEEE
Confidence            21100            00      0011578899988765432211 111111  1122244 455542    289999


Q ss_pred             eCCCCceEEccCCCCCcCCCCceEEE--eCCEEEEEcCCceEEEEEcCCcccc
Q 045821          276 QKESREWSPVGRLSTLLTRPPCKLVA--IGKTIFVIGKGCSAVVIDVGNIGNI  326 (352)
Q Consensus       276 d~~~~~W~~~~~~~~~~~~~~~~~~~--~~~~i~v~gG~~~~~~~d~~~~~w~  326 (352)
                      |.++.+-...-..+.    ...+++.  -++.||+.+....+.+||+++..-.
T Consensus       266 d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          266 DLEKNASIKRVPLPH----SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             ETTTTEEEEEEECSS----CCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             ECCCCcCcceecCCC----ceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence            998866433222221    1122222  2445777655556778999876533

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.42  E-value=0.21  Score=43.31  Aligned_cols=151  Identities=7%  Similarity=-0.010  Sum_probs=73.8

Q ss_pred             CCEEEEEeCCCCCCceEEEeCCC--CcEEEecCCCCcccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCceeec
Q 045821          167 NQKIYCIGGLGDTHSWDVYDPRT--NNWKLHTEPNIFTEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTDSWLHA  242 (352)
Q Consensus       167 ~~~iyv~gG~~~~~~v~~yd~~t--~~W~~~~~~~~~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~  242 (352)
                      +++.++.|+.+  ..+.+||..+  ..++.+..+.........+.+  ++.+++.|+.++     .+..+|..++.|..+
T Consensus       118 ~g~~las~s~D--~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~-----~i~iW~~~~~~~~~~  190 (330)
T 2hes_X          118 DGYYLATCSRD--KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD-----TVRIWKDYDDDWECV  190 (330)
T ss_dssp             TSCEEEEEETT--SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTS-----CEEEEEEETTEEEEE
T ss_pred             CCCEEEEEeCC--CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCC-----eEEEEECCCCCeeEE
Confidence            56666777665  6788898843  344443322221111122222  567777766553     366677666666544


Q ss_pred             CCCCCCCCCCcEEEE--C--CEEEEEecCCCCeEEEEeCCCC------ceEEccCCCCCcCCCCceEEEeCCEEEEEcCC
Q 045821          243 DANMASGWRGPAVVV--D--DALYVLDQSSGTKLMMWQKESR------EWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKG  312 (352)
Q Consensus       243 ~~~~~~~~~~~~~~~--~--~~l~~~gg~~~~~v~~yd~~~~------~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~  312 (352)
                      .....+...-..+.+  +  +..++.|+.++ .+.+||..+.      .|..+..++......-.++....+.+++.||.
T Consensus       191 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~-~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~  269 (330)
T 2hes_X          191 AVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS-TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGA  269 (330)
T ss_dssp             EEECCCSSCEEEEEECCSSSSCEEEEEETTS-CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEET
T ss_pred             EEccCCCCcEEEEEecCCCCeeEEEEEeCCC-eEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeC
Confidence            321111111111222  2  34556666655 7878876532      45555444321112222333223334444544


Q ss_pred             c-eEEEEEcCCccc
Q 045821          313 C-SAVVIDVGNIGN  325 (352)
Q Consensus       313 ~-~~~~~d~~~~~w  325 (352)
                      + .+.+||.....|
T Consensus       270 dg~v~iw~~~~~~~  283 (330)
T 2hes_X          270 DGVLAVYEEVDGEW  283 (330)
T ss_dssp             TSCEEEEEEETTEE
T ss_pred             CCEEEEEEcCCCce
Confidence            4 466888876555

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=96.38  E-value=0.15  Score=45.02  Aligned_cols=183  Identities=10%  Similarity=0.064  Sum_probs=84.7

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE-CCE-EEEEeCCCCCCceEEEeCCC----CcE
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQK-IYCIGGLGDTHSWDVYDPRT----NNW  192 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~-iyv~gG~~~~~~v~~yd~~t----~~W  192 (352)
                      ++..++.|+.      ...+.+||........+.....+  -.+++.. ++. +++.|+.+  ..+.+||..+    ...
T Consensus       174 ~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~h~~~--v~~~~~~~~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~  243 (383)
T 3ei3_B          174 SRQMLATGDS------TGRLLLLGLDGHEIFKEKLHKAK--VTHAEFNPRCDWLMATSSVD--ATVKLWDLRNIKDKNSY  243 (383)
T ss_dssp             TTTEEEEEET------TSEEEEEETTSCEEEEEECSSSC--EEEEEECSSCTTEEEEEETT--SEEEEEEGGGCCSTTCE
T ss_pred             CCCEEEEECC------CCCEEEEECCCCEEEEeccCCCc--EEEEEECCCCCCEEEEEeCC--CEEEEEeCCCCCcccce
Confidence            4555566653      35688889854433333221111  1112222 344 66667655  6788999887    333


Q ss_pred             EEecCCCCcccceeEEE-E-CCEEEEEccCCCCCCceEEEEEeCCCCcee-ecCCCCC------CC----CC--CcE--E
Q 045821          193 KLHTEPNIFTEIEDSFV-M-DGKIYIRCSASAATSHVCALVYEPSTDSWL-HADANMA------SG----WR--GPA--V  255 (352)
Q Consensus       193 ~~~~~~~~~~~~~~~~~-~-~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~-~~~~~~~------~~----~~--~~~--~  255 (352)
                      .....  .......+.. - ++++++.|+.++     .+..||..+.+-. .+.....      ..    ++  ...  +
T Consensus       244 ~~~~~--~~~~v~~~~~s~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  316 (383)
T 3ei3_B          244 IAEMP--HEKPVNAAYFNPTDSTKLLTTDQRN-----EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVA  316 (383)
T ss_dssp             EEEEE--CSSCEEEEEECTTTSCEEEEEESSS-----EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEE
T ss_pred             EEEec--CCCceEEEEEcCCCCCEEEEEcCCC-----cEEEEECCCCccccccccccccccccccceEEeccCCCCceEE
Confidence            22211  1111111222 2 567777765542     5778887654321 1110000      00    00  000  1


Q ss_pred             --EECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCce-EEEeCCEEEEEcCCceEEEEEcCC
Q 045821          256 --VVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCK-LVAIGKTIFVIGKGCSAVVIDVGN  322 (352)
Q Consensus       256 --~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~-~~~~~~~i~v~gG~~~~~~~d~~~  322 (352)
                        ..++++  .|+.++ .+.+||..+++....-..+.. ...... ....++++++.|+...+.+||+++
T Consensus       317 ~~s~dg~~--s~s~d~-~i~iwd~~~~~~~~~l~~~~~-~~~~~~~~~s~~g~~l~s~sd~~i~iw~~~~  382 (383)
T 3ei3_B          317 GRYPDDQL--LLNDKR-TIDIYDANSGGLVHQLRDPNA-AGIISLNKFSPTGDVLASGMGFNILIWNRED  382 (383)
T ss_dssp             ECBCCTTT--CTTCCC-CEEEEETTTCCEEEEECBTTB-CSCCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred             EecCCccc--ccCCCC-eEEEEecCCCceeeeecCCCC-CceEEEEEEecCccEEEEecCCcEEEEecCC
Confidence              123333  344444 899999987765322111110 111122 223366666666644677888864

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=96.37  E-value=0.12  Score=46.09  Aligned_cols=189  Identities=12%  Similarity=0.093  Sum_probs=93.4

Q ss_pred             CEEEEEeCCCCCCCCCCeEEEEECCCCe------eE-ecCCCCCccee-eeeEEE-C-CEEEEEeCCCCCCceEEEeCCC
Q 045821          120 KNAYLLGGCGWSEDATSEVYCYDASMNT------WT-DAAPMSTARCY-FPCGVL-N-QKIYCIGGLGDTHSWDVYDPRT  189 (352)
Q Consensus       120 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~------W~-~~~~~~~~r~~-~~~~~~-~-~~iyv~gG~~~~~~v~~yd~~t  189 (352)
                      +.+++.|+.+      ..+.+||..+.+      -. .+......... .+++.. + +.+++.++.+  ..+.+||..+
T Consensus       126 ~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~v~iwd~~~  197 (416)
T 2pm9_A          126 DNVLASGGNN------GEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS--NFASIWDLKA  197 (416)
T ss_dssp             TTBEEEECSS------SCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSS--SCEEEEETTT
T ss_pred             CCEEEEEcCC------CeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCC--CCEEEEECCC
Confidence            5666666543      457888887764      11 11111111111 122222 3 5677777765  6799999998


Q ss_pred             CcEEEecCCCC-----cccceeEEEE-CC-EEEEEccCCCCCCceEEEEEeCCCCce--eecCCCCCCCCCCcEEEE---
Q 045821          190 NNWKLHTEPNI-----FTEIEDSFVM-DG-KIYIRCSASAATSHVCALVYEPSTDSW--LHADANMASGWRGPAVVV---  257 (352)
Q Consensus       190 ~~W~~~~~~~~-----~~~~~~~~~~-~g-~iyv~GG~~~~~~~~~i~~yd~~~~~W--~~~~~~~~~~~~~~~~~~---  257 (352)
                      .+-...-....     ......++.. ++ .+++.|+..+  ....+..||..+..-  ..+..  .+......+.+   
T Consensus       198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~~~~i~~~d~~~~~~~~~~~~~--~~~~~v~~~~~s~~  273 (416)
T 2pm9_A          198 KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD--NDPSILIWDLRNANTPLQTLNQ--GHQKGILSLDWCHQ  273 (416)
T ss_dssp             TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS--SSCCCCEEETTSTTSCSBCCCS--CCSSCEEEEEECSS
T ss_pred             CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCC--CCceEEEEeCCCCCCCcEEeec--CccCceeEEEeCCC
Confidence            76543322221     1111122222 33 5666655442  111467788766421  11110  11111112332   


Q ss_pred             CCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEE-EeCC-EEEEEcCCce-EEEEEcCCcc
Q 045821          258 DDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLV-AIGK-TIFVIGKGCS-AVVIDVGNIG  324 (352)
Q Consensus       258 ~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~~-~i~v~gG~~~-~~~~d~~~~~  324 (352)
                      ++.+++.++.++ .+.+||..+.+-...  +... .....++. ..++ ++++.++.+. +.+||+....
T Consensus       274 ~~~~l~s~~~dg-~v~~wd~~~~~~~~~--~~~~-~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          274 DEHLLLSSGRDN-TVLLWNPESAEQLSQ--FPAR-GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             CSSCEEEEESSS-EEEEECSSSCCEEEE--EECS-SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred             CCCeEEEEeCCC-CEEEeeCCCCcccee--ecCC-CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence            677788887766 899999887653221  1110 11111222 2244 6777777664 5589987654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=96.36  E-value=0.25  Score=43.51  Aligned_cols=243  Identities=10%  Similarity=-0.041  Sum_probs=116.8

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECC-EEEEEeCCCCCCCCCCeEEEEECCCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGK-NAYLLGGCGWSEDATSEVYCYDASMN  146 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~d~~t~  146 (352)
                      ++..+++... ..+...++.+|.  .+.....+...+.   ..........++ .|+....       ...++++|+.++
T Consensus        46 Dg~~l~~~~~-~~g~~~l~~~d~--~~g~~~~lt~~~~---~~~~~~~~spdg~~l~~~~~-------~~~l~~~d~~~g  112 (388)
T 3pe7_A           46 DGSKLLFGGA-FDGPWNYYLLDL--NTQVATQLTEGRG---DNTFGGFLSPDDDALFYVKD-------GRNLMRVDLATL  112 (388)
T ss_dssp             TSCEEEEEEC-TTSSCEEEEEET--TTCEEEECCCSSC---BCSSSCEECTTSSEEEEEET-------TTEEEEEETTTC
T ss_pred             CCCEEEEEEc-CCCCceEEEEeC--CCCceEEeeeCCC---CCccceEEcCCCCEEEEEeC-------CCeEEEEECCCC
Confidence            4443344432 234557888899  8887766654431   111111233344 4444432       247899999988


Q ss_pred             eeEecCCCCCcceeeeeEE--ECCEEEEEe----C----------------CCCCCceEEEeCCCCcEEEecCCCCcccc
Q 045821          147 TWTDAAPMSTARCYFPCGV--LNQKIYCIG----G----------------LGDTHSWDVYDPRTNNWKLHTEPNIFTEI  204 (352)
Q Consensus       147 ~W~~~~~~~~~r~~~~~~~--~~~~iyv~g----G----------------~~~~~~v~~yd~~t~~W~~~~~~~~~~~~  204 (352)
                      +-..+...+..........  -+++.++.-    .                ......++++|..+++-+.+..... ...
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~~  191 (388)
T 3pe7_A          113 EENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQ-WLG  191 (388)
T ss_dssp             CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESS-CEE
T ss_pred             cceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCc-ccc
Confidence            7665544443322212111  133333211    0                0111678899999887666542211 112


Q ss_pred             eeEEEE-CCEEEEEccCCC-CCCceEEEEEeCCCCceeecCCCCCC-CCCCcEEEECCE-EEEEecCCC-C--eEEEEeC
Q 045821          205 EDSFVM-DGKIYIRCSASA-ATSHVCALVYEPSTDSWLHADANMAS-GWRGPAVVVDDA-LYVLDQSSG-T--KLMMWQK  277 (352)
Q Consensus       205 ~~~~~~-~g~iyv~GG~~~-~~~~~~i~~yd~~~~~W~~~~~~~~~-~~~~~~~~~~~~-l~~~gg~~~-~--~v~~yd~  277 (352)
                      .....- +|+..++..... ......++.+|..+.....+...... ........-+|+ |++.....+ .  .+++||+
T Consensus       192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~  271 (388)
T 3pe7_A          192 HPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADP  271 (388)
T ss_dssp             EEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECT
T ss_pred             ccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEec
Confidence            222333 455433322211 11234788999887766666432110 011112223554 545443322 2  4999999


Q ss_pred             CCCceEEccCCCCCc----CCCCceEEEeCCEEEEE---------cCCceEEEEEcCCcc
Q 045821          278 ESREWSPVGRLSTLL----TRPPCKLVAIGKTIFVI---------GKGCSAVVIDVGNIG  324 (352)
Q Consensus       278 ~~~~W~~~~~~~~~~----~~~~~~~~~~~~~i~v~---------gG~~~~~~~d~~~~~  324 (352)
                      .+++-..+...+...    ......+..-+..|++.         ++...++++|++...
T Consensus       272 ~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (388)
T 3pe7_A          272 ETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT  331 (388)
T ss_dssp             TTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred             CCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence            998876665443200    01112333334444432         445567778877644

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=96.35  E-value=0.36  Score=45.34  Aligned_cols=184  Identities=10%  Similarity=0.010  Sum_probs=91.3

Q ss_pred             CCeEEEEECCCCeeE-ecCCC----------CCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcc
Q 045821          135 TSEVYCYDASMNTWT-DAAPM----------STARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFT  202 (352)
Q Consensus       135 ~~~~~~~d~~t~~W~-~~~~~----------~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~  202 (352)
                      ...+.++|..+.+-. .++..          +.++.......- +..+|+.....  ..+.++|..+..-..+...+...
T Consensus       247 ~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~--g~i~vvd~~~~~~l~~~~i~~~~  324 (543)
T 1nir_A          247 PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET--GKVLLVNYKDIDNLTVTSIGAAP  324 (543)
T ss_dssp             SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT--TEEEEEECTTSSSCEEEEEECCS
T ss_pred             CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC--CeEEEEEecCCCcceeEEeccCc
Confidence            356788898877532 22211          111222222222 34555554322  67888988765321111111112


Q ss_pred             cceeEE-EECCE-EEEEccCCCCCCceEEEEEeCCCCceeec-CC-CCCCCCCCcEEEE--CCEEEEEecCCCCeEEEEe
Q 045821          203 EIEDSF-VMDGK-IYIRCSASAATSHVCALVYEPSTDSWLHA-DA-NMASGWRGPAVVV--DDALYVLDQSSGTKLMMWQ  276 (352)
Q Consensus       203 ~~~~~~-~~~g~-iyv~GG~~~~~~~~~i~~yd~~~~~W~~~-~~-~~~~~~~~~~~~~--~~~l~~~gg~~~~~v~~yd  276 (352)
                      .-+..+ .-+|+ +|+.+..     ...+.++|..+++-... +. ..++...+..+..  ++.+|+.+......|.+||
T Consensus       325 ~~~~~~~spdg~~l~va~~~-----~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d  399 (543)
T 1nir_A          325 FLHDGGWDSSHRYFMTAANN-----SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIG  399 (543)
T ss_dssp             SCCCEEECTTSCEEEEEEGG-----GTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEE
T ss_pred             CccCceECCCCCEEEEEecC-----CCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEE
Confidence            222222 23565 5555321     23678899988865432 21 1222222333333  3678877754444899999


Q ss_pred             CCCC-----ceEEccCCCCCcCCCCc-eEEEeCCEEEEEc--C-----CceEEEEEcCCccc
Q 045821          277 KESR-----EWSPVGRLSTLLTRPPC-KLVAIGKTIFVIG--K-----GCSAVVIDVGNIGN  325 (352)
Q Consensus       277 ~~~~-----~W~~~~~~~~~~~~~~~-~~~~~~~~i~v~g--G-----~~~~~~~d~~~~~w  325 (352)
                      ..+.     .|+.+..++.......+ ++..-+..||+-.  +     ...+.+||+++..-
T Consensus       400 ~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~  461 (543)
T 1nir_A          400 TDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA  461 (543)
T ss_dssp             CCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred             eCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCC
Confidence            8762     38777665432111111 2222345677654  2     23678899987653

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=96.34  E-value=0.41  Score=42.20  Aligned_cols=189  Identities=8%  Similarity=-0.033  Sum_probs=89.2

Q ss_pred             EEEEEeCCCCCCCCCCeEEEEECCCCe------eEecCCCC----CcceeeeeEE----ECCEE-EEEeCCCCCCceEEE
Q 045821          121 NAYLLGGCGWSEDATSEVYCYDASMNT------WTDAAPMS----TARCYFPCGV----LNQKI-YCIGGLGDTHSWDVY  185 (352)
Q Consensus       121 ~iyv~GG~~~~~~~~~~~~~~d~~t~~------W~~~~~~~----~~r~~~~~~~----~~~~i-yv~gG~~~~~~v~~y  185 (352)
                      ..++.|+.+      ..+.+||..+++      +..+...+    ..........    -++.. ++.|+.+  ..+.+|
T Consensus        82 ~~l~s~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d--g~i~iw  153 (397)
T 1sq9_A           82 CLVATTSFS------GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK--GTTYIW  153 (397)
T ss_dssp             EEEEEEETT------SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT--SCEEEE
T ss_pred             cEEEEEcCC------CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC--CcEEEE
Confidence            667776643      457888877665      66555442    1111122222    24555 6666655  577888


Q ss_pred             eCCC------Cc---EE---EecC---C-CCccc-ceeEEEE-CCEEEEEccCCCCCCceEEEEEeCCCCceeec-CCCC
Q 045821          186 DPRT------NN---WK---LHTE---P-NIFTE-IEDSFVM-DGKIYIRCSASAATSHVCALVYEPSTDSWLHA-DANM  246 (352)
Q Consensus       186 d~~t------~~---W~---~~~~---~-~~~~~-~~~~~~~-~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~-~~~~  246 (352)
                      |..+      ..   |.   .+..   . ..... ...+... ++ +++.|+.+     ..+..||..+.+-... ....
T Consensus       154 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~  227 (397)
T 1sq9_A          154 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN-----GTVQISELSTLRPLYNFESQH  227 (397)
T ss_dssp             EEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT-----SEEEEEETTTTEEEEEEECCC
T ss_pred             eCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC-----CcEEEEECCCCceeEEEeccc
Confidence            8776      32   11   1100   0 00111 1122222 56 66665443     2588899877654322 1100


Q ss_pred             CC---CCCCcEEE--ECCEEEEEecCC---CCeEEEEeCCCCceE-EccCCCCC---------cCCCCceEEE-eCCEEE
Q 045821          247 AS---GWRGPAVV--VDDALYVLDQSS---GTKLMMWQKESREWS-PVGRLSTL---------LTRPPCKLVA-IGKTIF  307 (352)
Q Consensus       247 ~~---~~~~~~~~--~~~~l~~~gg~~---~~~v~~yd~~~~~W~-~~~~~~~~---------~~~~~~~~~~-~~~~i~  307 (352)
                      .+   ......+.  .++++++.++.+   + .+.+||..+.+-. .+...+..         ......++.. .+++++
T Consensus       228 ~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  306 (397)
T 1sq9_A          228 SMINNSNSIRSVKFSPQGSLLAIAHDSNSFG-CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL  306 (397)
T ss_dssp             ---CCCCCEEEEEECSSTTEEEEEEEETTEE-EEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE
T ss_pred             cccccCCccceEEECCCCCEEEEEecCCCCc-eEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEE
Confidence            01   11111222  256777777665   4 8999999876532 22210000         0111122222 245556


Q ss_pred             EEcCCc-eEEEEEcCCcc
Q 045821          308 VIGKGC-SAVVIDVGNIG  324 (352)
Q Consensus       308 v~gG~~-~~~~~d~~~~~  324 (352)
                      +.|+.+ .+.+||+....
T Consensus       307 ~~~~~dg~i~iwd~~~~~  324 (397)
T 1sq9_A          307 CSAGWDGKLRFWDVKTKE  324 (397)
T ss_dssp             EEEETTSEEEEEETTTTE
T ss_pred             EEEeCCCeEEEEEcCCCc
Confidence            666554 46689987654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=96.33  E-value=0.14  Score=45.60  Aligned_cols=191  Identities=14%  Similarity=0.150  Sum_probs=90.7

Q ss_pred             EEEEEeCCCCCCCCCCeEEEEECCCCeeEecCC-CCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEec-C
Q 045821          121 NAYLLGGCGWSEDATSEVYCYDASMNTWTDAAP-MSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHT-E  197 (352)
Q Consensus       121 ~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~-~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~-~  197 (352)
                      .+++.|+.+      ..+.+||..+++....-. ......-.+++.. ++..++.|+.+  ..+.+||+.+.+-...- .
T Consensus       145 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~  216 (402)
T 2aq5_A          145 NVLLSAGCD------NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD--KRVRVIEPRKGTVVAEKDR  216 (402)
T ss_dssp             TEEEEEETT------SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT--SEEEEEETTTTEEEEEEEC
T ss_pred             CEEEEEcCC------CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC--CcEEEEeCCCCceeeeecc
Confidence            466666543      458899998886542211 1111111122222 56666666655  67899999887643321 1


Q ss_pred             CCCcc-cceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCce--eecCCCCCCCCCCcEEEECC-EEEEEecCCCCeEE
Q 045821          198 PNIFT-EIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSW--LHADANMASGWRGPAVVVDD-ALYVLDQSSGTKLM  273 (352)
Q Consensus       198 ~~~~~-~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W--~~~~~~~~~~~~~~~~~~~~-~l~~~gg~~~~~v~  273 (352)
                      ..... ....+..-++++++.|...  .....+..||..+..-  .................-++ .|++.|+.++ .+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~l~~g~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg-~i~  293 (402)
T 2aq5_A          217 PHEGTRPVHAVFVSEGKILTTGFSR--MSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDS-SIR  293 (402)
T ss_dssp             SSCSSSCCEEEECSTTEEEEEEECT--TCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCS-CEE
T ss_pred             CCCCCcceEEEEcCCCcEEEEeccC--CCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCC-eEE
Confidence            11111 1222233477877775211  1123688888876432  11111111111111122344 4555565454 899


Q ss_pred             EEeCCCCc--eEEccCCCCCcCCCCceEEEeCCEEEEEcCCceEEEEEcCCcc
Q 045821          274 MWQKESRE--WSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCSAVVIDVGNIG  324 (352)
Q Consensus       274 ~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~d~~~~~  324 (352)
                      +||..+++  ...+.....  .....++....+..+++.+.....+|+.....
T Consensus       294 i~d~~~~~~~~~~l~~~~~--~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          294 YFEITSEAPFLHYLSMFSS--KESQRGMGYMPKRGLEVNKCEIARFYKLHERK  344 (402)
T ss_dssp             EEEECSSTTCEEEEEEECC--SSCCSEEEECCGGGSCGGGTEEEEEEEEETTE
T ss_pred             EEEecCCCcceEeeccccc--CCcccceEEecccccceecceeEEEEEcCCCc
Confidence            99998776  444443321  11112233222222333444455567766543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=96.32  E-value=0.42  Score=42.54  Aligned_cols=185  Identities=14%  Similarity=0.130  Sum_probs=86.2

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCcEEE-e
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNNWKL-H  195 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~W~~-~  195 (352)
                      ++..++.|+.      ...+.+||..+++....-.....  -..++..  ++++++.|+.+  ..+.+||..+..-.. +
T Consensus       176 ~~~~l~s~s~------d~~v~iwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~s~d--~~v~iwd~~~~~~~~~~  245 (393)
T 1erj_A          176 SGDKLVSGSG------DRTVRIWDLRTGQCSLTLSIEDG--VTTVAVSPGDGKYIAAGSLD--RAVRVWDSETGFLVERL  245 (393)
T ss_dssp             TSSEEEEEET------TSEEEEEETTTTEEEEEEECSSC--EEEEEECSTTCCEEEEEETT--SCEEEEETTTCCEEEEE
T ss_pred             CCCEEEEecC------CCcEEEEECCCCeeEEEEEcCCC--cEEEEEECCCCCEEEEEcCC--CcEEEEECCCCcEEEee
Confidence            4444555543      35688899988764332211111  1122222  56777777766  678899998875432 2


Q ss_pred             cCCC---Ccccc-eeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCceeecCCC----------CCCCCCCcEEE--E
Q 045821          196 TEPN---IFTEI-EDSFVM--DGKIYIRCSASAATSHVCALVYEPSTDSWLHADAN----------MASGWRGPAVV--V  257 (352)
Q Consensus       196 ~~~~---~~~~~-~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~----------~~~~~~~~~~~--~  257 (352)
                      ....   ..+.. ...+.+  +++.++.|+.++     .+..||..+..-......          ..+...-..+.  .
T Consensus       246 ~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~-----~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  320 (393)
T 1erj_A          246 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR-----SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ  320 (393)
T ss_dssp             C------CCCSSCEEEEEECTTSSEEEEEETTS-----EEEEEEC---------------CEEEEEECCSSCEEEEEECG
T ss_pred             cccccCCCCCCCCEEEEEECCCCCEEEEEeCCC-----EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECC
Confidence            1111   11111 112222  667777765543     466777654321110000          00000001122  2


Q ss_pred             CCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEe-------CCEEEEEcCCce-EEEEEcCC
Q 045821          258 DDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAI-------GKTIFVIGKGCS-AVVIDVGN  322 (352)
Q Consensus       258 ~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-------~~~i~v~gG~~~-~~~~d~~~  322 (352)
                      +++.++.|+.++ .+.+||..+.+-...  +.. ......++...       ++.+++.|+.+. +.++|.++
T Consensus       321 ~~~~l~sgs~D~-~v~iwd~~~~~~~~~--l~~-h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          321 NDEYILSGSKDR-GVLFWDKKSGNPLLM--LQG-HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             GGCEEEEEETTS-EEEEEETTTCCEEEE--EEC-CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CCCEEEEEeCCC-eEEEEECCCCeEEEE--ECC-CCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            556666677665 899999987653221  111 00111122221       356777776664 44666543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=96.32  E-value=0.36  Score=41.16  Aligned_cols=181  Identities=13%  Similarity=0.101  Sum_probs=84.9

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCe-eE-ecCCCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCc--E
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNT-WT-DAAPMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNN--W  192 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~-W~-~~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~--W  192 (352)
                      ++.+++.|+.+      ..+.+||..++. -. .+....  ..-.+++..  ++.+++.|+.+  ..+.+||..+..  .
T Consensus       108 ~~~~l~sgs~D------~~v~lWd~~~~~~~~~~~~~h~--~~v~~v~~~p~~~~~l~sgs~D--~~v~iwd~~~~~~~~  177 (304)
T 2ynn_A          108 TKPYVLSGSDD------LTVKLWNWENNWALEQTFEGHE--HFVMCVAFNPKDPSTFASGCLD--RTVKVWSLGQSTPNF  177 (304)
T ss_dssp             SSSEEEEEETT------SCEEEEEGGGTTEEEEEECCCC--SCEEEEEECTTCTTEEEEEETT--SEEEEEETTCSSCSE
T ss_pred             CCCEEEEECCC------CeEEEEECCCCcchhhhhcccC--CcEEEEEECCCCCCEEEEEeCC--CeEEEEECCCCCccc
Confidence            44555666543      457788876542 11 111111  111122222  34667777766  678889886543  1


Q ss_pred             EEecCCCCcccceeEEEE---CCEEEEEccCCCCCCceEEEEEeCCCCceee-cCCCCCCCCCCcEE--EECCEEEEEec
Q 045821          193 KLHTEPNIFTEIEDSFVM---DGKIYIRCSASAATSHVCALVYEPSTDSWLH-ADANMASGWRGPAV--VVDDALYVLDQ  266 (352)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~---~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~-~~~~~~~~~~~~~~--~~~~~l~~~gg  266 (352)
                      ....  ............   ++.+.+.|+.++     .+..||..+.+-.. +..   +...-..+  .-++.+++.|+
T Consensus       178 ~~~~--~~~~~v~~~~~~~~~~~~~l~s~s~D~-----~i~iWd~~~~~~~~~~~~---h~~~v~~~~~~p~~~~l~s~s  247 (304)
T 2ynn_A          178 TLTT--GQERGVNYVDYYPLPDKPYMITASDDL-----TIKIWDYQTKSCVATLEG---HMSNVSFAVFHPTLPIIISGS  247 (304)
T ss_dssp             EEEC--CCTTCEEEEEECCSTTCCEEEEEETTS-----EEEEEETTTTEEEEEEEC---CSSCEEEEEECSSSSEEEEEE
T ss_pred             eecc--CCcCcEEEEEEEEcCCCCEEEEEcCCC-----eEEEEeCCCCccceeeCC---CCCCEEEEEECCCCCEEEEEc
Confidence            1111  010111111111   455666655542     57788887654322 111   11111112  23566777777


Q ss_pred             CCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEE--eCCEE-EEEcCCceEEEEEcCCc
Q 045821          267 SSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVA--IGKTI-FVIGKGCSAVVIDVGNI  323 (352)
Q Consensus       267 ~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~--~~~~i-~v~gG~~~~~~~d~~~~  323 (352)
                      .++ .+.+||..+.+-...-....   ....++..  .+++. ++.|..+...++++.++
T Consensus       248 ~Dg-~i~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~~  303 (304)
T 2ynn_A          248 EDG-TLKIWNSSTYKVEKTLNVGL---ERSWCIATHPTGRKNYIASGFDNGFTVLSLGND  303 (304)
T ss_dssp             TTS-CEEEEETTTCCEEEEECCSS---SSEEEEEECTTCGGGCEEEEETTEEEEEECC--
T ss_pred             CCC-eEEEEECCCCceeeeccCCC---ccEEEEEECCCCCceEEEEecCCceEEEEeccC
Confidence            766 89999998765443221111   11122321  23344 44555556667777654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.32  E-value=0.064  Score=52.75  Aligned_cols=176  Identities=7%  Similarity=-0.056  Sum_probs=85.3

Q ss_pred             CeEEEEECCCCeeEe-cCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEE
Q 045821          136 SEVYCYDASMNTWTD-AAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKI  214 (352)
Q Consensus       136 ~~~~~~d~~t~~W~~-~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~i  214 (352)
                      ..+.+||..+++... +..... ........-++...++|+.+  ..+.+||..++.....-......-...+..-++..
T Consensus        35 g~v~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d--g~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  111 (814)
T 3mkq_A           35 GRVEIWNYETQVEVRSIQVTET-PVRAGKFIARKNWIIVGSDD--FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY  111 (814)
T ss_dssp             SEEEEEETTTTEEEEEEECCSS-CEEEEEEEGGGTEEEEEETT--SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSE
T ss_pred             CEEEEEECCCCceEEEEecCCC-cEEEEEEeCCCCEEEEEeCC--CeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCE
Confidence            467888888775432 221111 11111112255566666654  67899999888754322111111111122225655


Q ss_pred             EEEccCCCCCCceEEEEEeCCCC-ceeecCCCCCCCCCCcEEEE---CCEEEEEecCCCCeEEEEeCCCCceEEccCCCC
Q 045821          215 YIRCSASAATSHVCALVYEPSTD-SWLHADANMASGWRGPAVVV---DDALYVLDQSSGTKLMMWQKESREWSPVGRLST  290 (352)
Q Consensus       215 yv~GG~~~~~~~~~i~~yd~~~~-~W~~~~~~~~~~~~~~~~~~---~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~  290 (352)
                      .+.|+.++     .+..||..++ .....-.  .+......+..   ++.+++.++.++ .+.+||..+..-...-....
T Consensus       112 l~~~~~dg-----~i~vw~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~dg-~v~vwd~~~~~~~~~~~~~~  183 (814)
T 3mkq_A          112 VLSGSDDL-----TVKLWNWENNWALEQTFE--GHEHFVMCVAFNPKDPSTFASGCLDR-TVKVWSLGQSTPNFTLTTGQ  183 (814)
T ss_dssp             EEEEETTS-----EEEEEEGGGTSEEEEEEE--CCSSCEEEEEEETTEEEEEEEEETTS-EEEEEETTCSSCSEEEECCC
T ss_pred             EEEEcCCC-----EEEEEECCCCceEEEEEc--CCCCcEEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCcceeEEecCC
Confidence            56655432     5778887655 2222211  11111112222   466777777666 89999987654322211111


Q ss_pred             CcCCCCceEEE-e--CCEEEEEcCCc-eEEEEEcCCcc
Q 045821          291 LLTRPPCKLVA-I--GKTIFVIGKGC-SAVVIDVGNIG  324 (352)
Q Consensus       291 ~~~~~~~~~~~-~--~~~i~v~gG~~-~~~~~d~~~~~  324 (352)
                        ......+.. .  ++..++.|+.+ .+.+||.....
T Consensus       184 --~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  219 (814)
T 3mkq_A          184 --ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS  219 (814)
T ss_dssp             --TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE
T ss_pred             --CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence              011112222 2  55566666555 45578876543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=96.31  E-value=0.041  Score=48.84  Aligned_cols=147  Identities=10%  Similarity=0.127  Sum_probs=70.8

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCcEEEec
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNNWKLHT  196 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~  196 (352)
                      ++.+++.|+.      ...+.+||..+.+-......+.+.........  ++.+++.|+.+  ..+.+||..+..-...-
T Consensus       111 ~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~d~~~~~~~~~~  182 (408)
T 4a11_B          111 DTGMFTSSSF------DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRG--PKVQLCDLKSGSCSHIL  182 (408)
T ss_dssp             CTTCEEEEET------TSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESS--SSEEEEESSSSCCCEEE
T ss_pred             CCcEEEEEeC------CCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCC--CeEEEEeCCCcceeeee
Confidence            3445666653      34688899988765433322222221111111  34466666655  67899998876432211


Q ss_pred             CCCCcccce-eEEEE-CCE-EEEEccCCCCCCceEEEEEeCCCCc--eeecCCC-------C---CCCCCCc--EEEE--
Q 045821          197 EPNIFTEIE-DSFVM-DGK-IYIRCSASAATSHVCALVYEPSTDS--WLHADAN-------M---ASGWRGP--AVVV--  257 (352)
Q Consensus       197 ~~~~~~~~~-~~~~~-~g~-iyv~GG~~~~~~~~~i~~yd~~~~~--W~~~~~~-------~---~~~~~~~--~~~~--  257 (352)
                        ....... ..... ++. +++.|+.++     .+..||..+..  ...+...       .   .......  .+.+  
T Consensus       183 --~~~~~~v~~~~~~~~~~~ll~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  255 (408)
T 4a11_B          183 --QGHRQEILAVSWSPRYDYILATASADS-----RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS  255 (408)
T ss_dssp             --CCCCSCEEEEEECSSCTTEEEEEETTS-----CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred             --cCCCCcEEEEEECCCCCcEEEEEcCCC-----cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence              1111111 12222 343 666665543     47778775543  1211100       0   0011111  1222  


Q ss_pred             CCEEEEEecCCCCeEEEEeCCCCc
Q 045821          258 DDALYVLDQSSGTKLMMWQKESRE  281 (352)
Q Consensus       258 ~~~l~~~gg~~~~~v~~yd~~~~~  281 (352)
                      +++.++.++.++ .+.+||..+..
T Consensus       256 ~~~~l~~~~~dg-~i~vwd~~~~~  278 (408)
T 4a11_B          256 DGLHLLTVGTDN-RMRLWNSSNGE  278 (408)
T ss_dssp             TSSEEEEEETTS-CEEEEETTTCC
T ss_pred             CCCEEEEecCCC-eEEEEECCCCc
Confidence            566666666655 78888877644

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=96.27  E-value=0.41  Score=39.98  Aligned_cols=190  Identities=7%  Similarity=-0.061  Sum_probs=99.9

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE--CCEEEEEeCCCCCCCCCCeEEEEECCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL--GKNAYLLGGCGWSEDATSEVYCYDASM  145 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t  145 (352)
                      ++.||+...    ....++.+|+  .+..-..+....   . ..-..++.-  ++.+|+...      ....+.++|+..
T Consensus        47 ~~~ly~~d~----~~~~I~~~~~--~g~~~~~~~~~~---~-~~p~~ia~d~~~~~lyv~d~------~~~~I~~~~~~g  110 (267)
T 1npe_A           47 DKVVYWTDI----SEPSIGRASL--HGGEPTTIIRQD---L-GSPEGIALDHLGRTIFWTDS------QLDRIEVAKMDG  110 (267)
T ss_dssp             TTEEEEEET----TTTEEEEEES--SSCCCEEEECTT---C-CCEEEEEEETTTTEEEEEET------TTTEEEEEETTS
T ss_pred             CCEEEEEEC----CCCEEEEEec--CCCCcEEEEECC---C-CCccEEEEEecCCeEEEEEC------CCCEEEEEEcCC
Confidence            578888732    2335677787  554433332211   1 112334443  578998853      245788888875


Q ss_pred             CeeEecCCCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE--CCEEEEEccCC
Q 045821          146 NTWTDAAPMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM--DGKIYIRCSAS  221 (352)
Q Consensus       146 ~~W~~~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~iyv~GG~~  221 (352)
                      ..-..+..... .....+++-  ++++|+.........++++++....-+.+..... ..-...+.-  +++||+.-.. 
T Consensus       111 ~~~~~~~~~~~-~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~-~~P~gia~d~~~~~lyv~d~~-  187 (267)
T 1npe_A          111 TQRRVLFDTGL-VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNL-GLPNGLTFDAFSSQLCWVDAG-  187 (267)
T ss_dssp             CSCEEEECSSC-SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTC-SCEEEEEEETTTTEEEEEETT-
T ss_pred             CCEEEEEECCC-CCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCC-CCCcEEEEcCCCCEEEEEECC-
Confidence            43333221111 111233333  5899998753222578888876544333322111 111223332  5689998422 


Q ss_pred             CCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceE
Q 045821          222 AATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWS  283 (352)
Q Consensus       222 ~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~  283 (352)
                          ...|.++|+....-..+......+  ...+..++.||+.....+ .|.++|+.+++-.
T Consensus       188 ----~~~I~~~~~~g~~~~~~~~~~~~P--~gi~~d~~~lyva~~~~~-~v~~~d~~~g~~~  242 (267)
T 1npe_A          188 ----THRAECLNPAQPGRRKVLEGLQYP--FAVTSYGKNLYYTDWKTN-SVIAMDLAISKEM  242 (267)
T ss_dssp             ----TTEEEEEETTEEEEEEEEECCCSE--EEEEEETTEEEEEETTTT-EEEEEETTTTEEE
T ss_pred             ----CCEEEEEecCCCceEEEecCCCCc--eEEEEeCCEEEEEECCCC-eEEEEeCCCCCce
Confidence                236889998654322221111111  112345888998765444 8999999876543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.26  E-value=0.5  Score=40.84  Aligned_cols=212  Identities=9%  Similarity=0.030  Sum_probs=112.8

Q ss_pred             eEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE--CCEEEEEeCCCCCCCCCCeEEEEECCC----CeeEe-cC-CCC
Q 045821           84 CCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL--GKNAYLLGGCGWSEDATSEVYCYDASM----NTWTD-AA-PMS  155 (352)
Q Consensus        84 ~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t----~~W~~-~~-~~~  155 (352)
                      .+..+|.  .+.....+.+..     ..-.+++..  ++.||+...      ....++++|+..    ..... ++ .+.
T Consensus        11 ~I~~i~~--~~~~~~~~~~~~-----~~p~g~~~d~~~~~ly~~D~------~~~~I~~~~~~g~~~~~~~~~~~~~~~~   77 (316)
T 1ijq_A           11 EVRKMTL--DRSEYTSLIPNL-----RNVVALDTEVASNRIYWSDL------SQRMICSTQLDRAHGVSSYDTVISRDIQ   77 (316)
T ss_dssp             SEEEEET--TSCCCEEEECSC-----SSEEEEEEETTTTEEEEEET------TTTEEEEEEC--------CEEEECSSCS
T ss_pred             eEEEEEC--CCcceEehhcCC-----CceEEEEEEeCCCEEEEEEC------CCCcEEEEECCCCCCCcccEEEEeCCCC
Confidence            3455677  666555443211     122334443  578999863      246788999876    22222 21 122


Q ss_pred             CcceeeeeEE--ECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEE--ECCEEEEEccCCCCCCceEEEE
Q 045821          156 TARCYFPCGV--LNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFV--MDGKIYIRCSASAATSHVCALV  231 (352)
Q Consensus       156 ~~r~~~~~~~--~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~--~~g~iyv~GG~~~~~~~~~i~~  231 (352)
                      .|   ..+++  .++.||+.-...  ..+.++|+....-+.+.... ...-...++  .++.||+....    ....|++
T Consensus        78 ~p---~glavd~~~~~ly~~d~~~--~~I~~~~~~g~~~~~~~~~~-~~~P~~iavdp~~g~ly~~d~~----~~~~I~~  147 (316)
T 1ijq_A           78 AP---DGLAVDWIHSNIYWTDSVL--GTVSVADTKGVKRKTLFREN-GSKPRAIVVDPVHGFMYWTDWG----TPAKIKK  147 (316)
T ss_dssp             CC---CEEEEETTTTEEEEEETTT--TEEEEEETTSSSEEEEEECT-TCCEEEEEEETTTTEEEEEECS----SSCEEEE
T ss_pred             Cc---CEEEEeecCCeEEEEECCC--CEEEEEeCCCCceEEEEECC-CCCcceEEeCCCCCEEEEEccC----CCCeEEE
Confidence            22   23344  368999986533  67899998765433332111 111123334  37899998421    1236888


Q ss_pred             EeCCCCceeecCCCCCCCCCCcEE-E--ECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEE
Q 045821          232 YEPSTDSWLHADANMASGWRGPAV-V--VDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFV  308 (352)
Q Consensus       232 yd~~~~~W~~~~~~~~~~~~~~~~-~--~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v  308 (352)
                      +++....-+.+... ... ....+ .  .++.||+.....+ .|.++|++...-..+..... ....-.+++..++.||+
T Consensus       148 ~~~dG~~~~~~~~~-~~~-~P~gla~d~~~~~lY~~D~~~~-~I~~~d~dg~~~~~~~~~~~-~~~~P~giav~~~~ly~  223 (316)
T 1ijq_A          148 GGLNGVDIYSLVTE-NIQ-WPNGITLDLLSGRLYWVDSKLH-SISSIDVNGGNRKTILEDEK-RLAHPFSLAVFEDKVFW  223 (316)
T ss_dssp             EETTSCCEEEEECS-SCS-CEEEEEEETTTTEEEEEETTTT-EEEEEETTSCSCEEEEECTT-TTSSEEEEEEETTEEEE
T ss_pred             EcCCCCCeEEEEEC-CCC-CceEEEEeccCCEEEEEECCCC-eEEEEecCCCceEEEeecCC-ccCCcEEEEEECCEEEE
Confidence            88764433333211 111 11122 2  2678999876544 89999998654444432211 12233567777889998


Q ss_pred             Ec-CCceEEEEEcCC
Q 045821          309 IG-KGCSAVVIDVGN  322 (352)
Q Consensus       309 ~g-G~~~~~~~d~~~  322 (352)
                      .- +...+..+|...
T Consensus       224 ~d~~~~~V~~~~~~~  238 (316)
T 1ijq_A          224 TDIINEAIFSANRLT  238 (316)
T ss_dssp             EETTTTEEEEEETTT
T ss_pred             EECCCCeEEEEeCCC
Confidence            75 444566677643

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=96.26  E-value=0.25  Score=42.89  Aligned_cols=144  Identities=15%  Similarity=0.036  Sum_probs=77.7

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecCC
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEP  198 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~  198 (352)
                      ++.+|+.+..      ...+++||+.+++...+.. +. .....+..-++++++...    ..+.+||+.+++.+.+...
T Consensus        60 ~~~l~~~d~~------~~~i~~~d~~~~~~~~~~~-~~-~v~~i~~~~dg~l~v~~~----~gl~~~d~~~g~~~~~~~~  127 (326)
T 2ghs_A           60 SGTAWWFNIL------ERELHELHLASGRKTVHAL-PF-MGSALAKISDSKQLIASD----DGLFLRDTATGVLTLHAEL  127 (326)
T ss_dssp             TTEEEEEEGG------GTEEEEEETTTTEEEEEEC-SS-CEEEEEEEETTEEEEEET----TEEEEEETTTCCEEEEECS
T ss_pred             CCEEEEEECC------CCEEEEEECCCCcEEEEEC-CC-cceEEEEeCCCeEEEEEC----CCEEEEECCCCcEEEEeeC
Confidence            3678877632      3578999999887654432 21 111112223788888653    5689999999988776543


Q ss_pred             CCcc---cceeE-EEECCEEEEEccCC-CCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECC-EEEEEecCCCCeE
Q 045821          199 NIFT---EIEDS-FVMDGKIYIRCSAS-AATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDD-ALYVLDQSSGTKL  272 (352)
Q Consensus       199 ~~~~---~~~~~-~~~~g~iyv~GG~~-~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~l~~~gg~~~~~v  272 (352)
                      ....   ..... +.-+|++|+..... .......++++|  +.+...+..... ...+.+..-++ .||+..... ..|
T Consensus       128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~-~~~~i~~s~dg~~lyv~~~~~-~~I  203 (326)
T 2ghs_A          128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADIS-IPNSICFSPDGTTGYFVDTKV-NRL  203 (326)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEES-SEEEEEECTTSCEEEEEETTT-CEE
T ss_pred             CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCc-ccCCeEEcCCCCEEEEEECCC-CEE
Confidence            2211   11122 22367888753211 111234788998  455554421110 00111122245 577765433 389


Q ss_pred             EEEeCC
Q 045821          273 MMWQKE  278 (352)
Q Consensus       273 ~~yd~~  278 (352)
                      ++||..
T Consensus       204 ~~~d~~  209 (326)
T 2ghs_A          204 MRVPLD  209 (326)
T ss_dssp             EEEEBC
T ss_pred             EEEEcc
Confidence            999975

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=96.24  E-value=0.47  Score=40.31  Aligned_cols=193  Identities=6%  Similarity=0.045  Sum_probs=87.4

Q ss_pred             CEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE--C--CEEEEEeCCCCCCceEEEeCCCCc-EEE
Q 045821          120 KNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL--N--QKIYCIGGLGDTHSWDVYDPRTNN-WKL  194 (352)
Q Consensus       120 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~--~--~~iyv~gG~~~~~~v~~yd~~t~~-W~~  194 (352)
                      +.+++.|+.      ...+.+||..+++|..+..+.........+.+  +  +.+++.|+.+  ..+.+||..+.. +..
T Consensus        67 g~~l~s~s~------D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d--~~v~~wd~~~~~~~~~  138 (297)
T 2pm7_B           67 GTILASCSY------DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD--GKVSVVEFKENGTTSP  138 (297)
T ss_dssp             CSEEEEEET------TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT--SEEEEEEBCSSSCBCC
T ss_pred             CCEEEEEcC------CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC--CcEEEEEecCCCceee
Confidence            456666654      34678889888776544322211111112222  2  4566666655  677888887652 211


Q ss_pred             ecCCCCcccceeEEEE---------------CCEEEEEccCCCCCCceEEEEEeCC--CCceeecCCCCCCCCCCcEEEE
Q 045821          195 HTEPNIFTEIEDSFVM---------------DGKIYIRCSASAATSHVCALVYEPS--TDSWLHADANMASGWRGPAVVV  257 (352)
Q Consensus       195 ~~~~~~~~~~~~~~~~---------------~g~iyv~GG~~~~~~~~~i~~yd~~--~~~W~~~~~~~~~~~~~~~~~~  257 (352)
                      .. ..........+.+               ++++++.|+.++     .+..||..  ...|..+.....+...-..+.+
T Consensus       139 ~~-~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~-----~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~  212 (297)
T 2pm7_B          139 II-IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW  212 (297)
T ss_dssp             EE-EECCSSCEEEEEECCCC------------CCEEEEEETTS-----CEEEEEEETTTTEEEEEEEECCCSSCEEEEEE
T ss_pred             ee-eecccCccceEeecCCcccccccCCCCCCcceEEEEcCCC-----cEEEEEEcCCCceEEEEEEecCCCCceEEEEE
Confidence            10 0000000011111               245666665543     24455543  3335433221111111112222


Q ss_pred             --C---CEEEEEecCCCCeEEEEeCCCC--ceEEccCCCCCcCCCCceEE-EeCCEEEEEcCCc-eEEEEEcC-Cccccc
Q 045821          258 --D---DALYVLDQSSGTKLMMWQKESR--EWSPVGRLSTLLTRPPCKLV-AIGKTIFVIGKGC-SAVVIDVG-NIGNIG  327 (352)
Q Consensus       258 --~---~~l~~~gg~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~-~~~~~i~v~gG~~-~~~~~d~~-~~~w~~  327 (352)
                        +   +.+++.|+.++ .+.+||..+.  .|...............++. ..++++++.|+.+ .+.+++.. ...|+.
T Consensus       213 sp~~~~~~~las~s~D~-~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~w~~  291 (297)
T 2pm7_B          213 SPTVLLRSYMASVSQDR-TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEP  291 (297)
T ss_dssp             CCCCSSSEEEEEEETTS-CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred             CCCCCCceEEEEEECCC-cEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCcEEe
Confidence              2   46777777666 8888887763  35432111011111111222 2356666666555 46678876 334643

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=96.21  E-value=0.44  Score=41.09  Aligned_cols=186  Identities=6%  Similarity=-0.031  Sum_probs=89.4

Q ss_pred             CEEEEEeCCCCCCCCCCeEEEEECCCCe--eEecCCCCCcceeee-----eEEECCEEEEEeCCCCCCceEEEeCCCCc-
Q 045821          120 KNAYLLGGCGWSEDATSEVYCYDASMNT--WTDAAPMSTARCYFP-----CGVLNQKIYCIGGLGDTHSWDVYDPRTNN-  191 (352)
Q Consensus       120 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~r~~~~-----~~~~~~~iyv~gG~~~~~~v~~yd~~t~~-  191 (352)
                      +.+++.|+.+      ..+.+||..+.+  ...+.....+-....     +..-++..++.|+.+  ..+.+||..+.. 
T Consensus        80 ~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d--~~i~vwd~~~~~~  151 (357)
T 3i2n_A           80 QRYLATGDFG------GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD--GTVKVWDPRQKDD  151 (357)
T ss_dssp             TCCEEEEETT------SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETT--SCEEEECTTSCSS
T ss_pred             CceEEEecCC------CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCC--CeEEEEeCCCCCC
Confidence            3566666543      457788887664  222221111111110     011245566666655  678899998764 


Q ss_pred             -EEEecCCCCc-ccceeEEE------ECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEE-----C
Q 045821          192 -WKLHTEPNIF-TEIEDSFV------MDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVV-----D  258 (352)
Q Consensus       192 -W~~~~~~~~~-~~~~~~~~------~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~-----~  258 (352)
                       ...+...... ......+.      -++.+++.|+.++     .+..||..+.+-..... ..  .....+.+     +
T Consensus       152 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~-~~--~~v~~~~~~~~~~~  223 (357)
T 3i2n_A          152 PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNG-----DIKLFDLRNMALRWETN-IK--NGVCSLEFDRKDIS  223 (357)
T ss_dssp             CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTS-----EEEEEETTTTEEEEEEE-CS--SCEEEEEESCSSSS
T ss_pred             cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCC-----eEEEEECccCceeeecC-CC--CceEEEEcCCCCCC
Confidence             3333322211 11111122      3677777765442     58888987765432211 11  11112222     5


Q ss_pred             CEEEEEecCCCCeEEEEeCCCCceEEccCCC----CCcCCCCceEEE-eCCE-EEEEcCCc-eEEEEEcCCcc
Q 045821          259 DALYVLDQSSGTKLMMWQKESREWSPVGRLS----TLLTRPPCKLVA-IGKT-IFVIGKGC-SAVVIDVGNIG  324 (352)
Q Consensus       259 ~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~----~~~~~~~~~~~~-~~~~-i~v~gG~~-~~~~~d~~~~~  324 (352)
                      +..++.|+.++ .+.+||..+..-  +..++    ........++.. .++. +++.|+.+ .+.+||+....
T Consensus       224 ~~~l~~~~~dg-~i~i~d~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          224 MNKLVATSLEG-KFHVFDMRTQHP--TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI  293 (357)
T ss_dssp             CCEEEEEESTT-EEEEEEEEEEET--TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred             CCEEEEECCCC-eEEEEeCcCCCc--ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence            67777777666 899998765321  11110    000111122322 2445 66666655 45578887543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=96.20  E-value=0.67  Score=41.72  Aligned_cols=230  Identities=12%  Similarity=0.104  Sum_probs=116.4

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCe
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNT  147 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~  147 (352)
                      ++.||+...    ....+..+|+  .++....+.....  .+.  .+...-++.+|+.....     ...++.+|+.++.
T Consensus       141 ~g~lyv~d~----~~~~I~~id~--~~g~~~~~~~~~~--~~~--ia~~~~g~~l~~~d~~~-----~~~I~~~d~~~~~  205 (409)
T 3hrp_A          141 NNTVLAYQR----DDPRVRLISV--DDNKVTTVHPGFK--GGK--PAVTKDKQRVYSIGWEG-----THTVYVYMKASGW  205 (409)
T ss_dssp             TTEEEEEET----TTTEEEEEET--TTTEEEEEEETCC--BCB--CEECTTSSEEEEEBSST-----TCEEEEEEGGGTT
T ss_pred             CCCEEEEec----CCCcEEEEEC--CCCEEEEeeccCC--CCc--eeEecCCCcEEEEecCC-----CceEEEEEcCCCc
Confidence            567887743    2235677788  7776665544321  111  22222244677664311     1278999987653


Q ss_pred             -eEecCCCC--CcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCcEEEec---CCCCcccc--eeEEEE--CCEEE
Q 045821          148 -WTDAAPMS--TARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNNWKLHT---EPNIFTEI--EDSFVM--DGKIY  215 (352)
Q Consensus       148 -W~~~~~~~--~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~---~~~~~~~~--~~~~~~--~g~iy  215 (352)
                       ...+....  .....+.+++.  ++.||+...   ...+++||+.+..-..+.   ........  ...++.  ++.||
T Consensus       206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~---~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly  282 (409)
T 3hrp_A          206 APTRIGQLGSTFSGKIGAVALDETEEWLYFVDS---NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFY  282 (409)
T ss_dssp             CEEEEEECCTTSCSCCCBCEECTTSSEEEEECT---TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred             eeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC---CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence             22331111  11222333433  588999443   267999999988755541   11111111  134443  58999


Q ss_pred             EEccCCCCCCceEEEEEeCCCCceeecCCCCC----------CCCCCc-EEE--ECCEEEEEecCCCCeEEEEeCCCCce
Q 045821          216 IRCSASAATSHVCALVYEPSTDSWLHADANMA----------SGWRGP-AVV--VDDALYVLDQSSGTKLMMWQKESREW  282 (352)
Q Consensus       216 v~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~----------~~~~~~-~~~--~~~~l~~~gg~~~~~v~~yd~~~~~W  282 (352)
                      +.....     ..|++||.....-........          .....+ .+.  -++.||+.....+..|.++|+.++..
T Consensus       283 v~d~~~-----~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          283 MSDQNL-----SSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV  357 (409)
T ss_dssp             EEETTT-----TEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred             EEeCCC-----CEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE
Confidence            984222     368888876542222111100          001112 233  35778888751334999999777776


Q ss_pred             EEccCCCCC-----------cCCCCceEEEe-CCEEEEEcC-CceEEEEEc
Q 045821          283 SPVGRLSTL-----------LTRPPCKLVAI-GKTIFVIGK-GCSAVVIDV  320 (352)
Q Consensus       283 ~~~~~~~~~-----------~~~~~~~~~~~-~~~i~v~gG-~~~~~~~d~  320 (352)
                      ..+...+..           ....-.+++.- ++.|||... ...+..+++
T Consensus       358 ~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          358 STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            665432110           01112234433 478888753 334444554

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=96.20  E-value=0.33  Score=41.76  Aligned_cols=182  Identities=9%  Similarity=0.044  Sum_probs=87.1

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeE-ecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEec
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWT-DAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHT  196 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~-~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~  196 (352)
                      ++..++.|+.      ...+.+||..+++-. .+.....+ . .+++.. ++.+++.|+.+  ..+.+||.....-..+.
T Consensus        76 dg~~l~s~s~------D~~v~~wd~~~~~~~~~~~~h~~~-v-~~~~~~~~~~~l~s~s~D--~~i~vwd~~~~~~~~~~  145 (319)
T 3frx_A           76 DGAYALSASW------DKTLRLWDVATGETYQRFVGHKSD-V-MSVDIDKKASMIISGSRD--KTIKVWTIKGQCLATLL  145 (319)
T ss_dssp             TSSEEEEEET------TSEEEEEETTTTEEEEEEECCSSC-E-EEEEECTTSCEEEEEETT--SCEEEEETTSCEEEEEC
T ss_pred             CCCEEEEEeC------CCEEEEEECCCCCeeEEEccCCCc-E-EEEEEcCCCCEEEEEeCC--CeEEEEECCCCeEEEEe
Confidence            4555556653      356888999887632 22211111 1 111111 45667777765  67888888765433332


Q ss_pred             CCCCcccceeEEEE-------CCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCC
Q 045821          197 EPNIFTEIEDSFVM-------DGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSG  269 (352)
Q Consensus       197 ~~~~~~~~~~~~~~-------~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~  269 (352)
                      ...  .........       ++.+++.|+.++     .+..||..+.+-...-..........++..++++++.|+.++
T Consensus       146 ~h~--~~v~~~~~~~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg  218 (319)
T 3frx_A          146 GHN--DWVSQVRVVPNEKADDDSVTIISAGNDK-----MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDG  218 (319)
T ss_dssp             CCS--SCEEEEEECCC------CCEEEEEETTS-----CEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTC
T ss_pred             ccC--CcEEEEEEccCCCCCCCccEEEEEeCCC-----EEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence            111  011111111       233555555442     477778766543221110000000111223677777887766


Q ss_pred             CeEEEEeCCCCceEEccCCCCCcCCCCceEE-EeCCEEEEEcCCceEEEEEcCC
Q 045821          270 TKLMMWQKESREWSPVGRLSTLLTRPPCKLV-AIGKTIFVIGKGCSAVVIDVGN  322 (352)
Q Consensus       270 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~i~v~gG~~~~~~~d~~~  322 (352)
                       .+.+||..+.+-...-....    ...++. ..++.+++.+......+|+.+.
T Consensus       219 -~i~iwd~~~~~~~~~~~~~~----~v~~~~~sp~~~~la~~~~~~i~v~~~~~  267 (319)
T 3frx_A          219 -EIMLWNLAAKKAMYTLSAQD----EVFSLAFSPNRYWLAAATATGIKVFSLDP  267 (319)
T ss_dssp             -EEEEEETTTTEEEEEEECCS----CEEEEEECSSSSEEEEEETTEEEEEEETT
T ss_pred             -eEEEEECCCCcEEEEecCCC----cEEEEEEcCCCCEEEEEcCCCcEEEEeCc
Confidence             89999998765322211111    111222 2345555555555566677654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=96.18  E-value=0.08  Score=46.56  Aligned_cols=174  Identities=11%  Similarity=0.068  Sum_probs=83.1

Q ss_pred             CeEEEEECCCCeeEecCCCC-Ccce--eeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccce-eEEE-
Q 045821          136 SEVYCYDASMNTWTDAAPMS-TARC--YFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIE-DSFV-  209 (352)
Q Consensus       136 ~~~~~~d~~t~~W~~~~~~~-~~r~--~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~-~~~~-  209 (352)
                      ..+.+||..+++-....... ..+.  -.+++.. +++..+.|+.+  ..+.++|..+++-...  +....... .... 
T Consensus       103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d--~~i~iwd~~~~~~~~~--~~~h~~~V~~~~~~  178 (344)
T 4gqb_B          103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD--ICIKVWDLAQQVVLSS--YRAHAAQVTCVAAS  178 (344)
T ss_dssp             SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT--SCEEEEETTTTEEEEE--ECCCSSCEEEEEEC
T ss_pred             CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC--CeEEEEECCCCcEEEE--EcCcCCceEEEEec
Confidence            46888898876522111100 0111  1122222 56777777765  6789999998754322  11111111 1222 


Q ss_pred             ECC-EEEEEccCCCCCCceEEEEEeCCCCceee-cCCCCCCCCCCcEEEE---CCEEEEEecCCCCeEEEEeCCCCceEE
Q 045821          210 MDG-KIYIRCSASAATSHVCALVYEPSTDSWLH-ADANMASGWRGPAVVV---DDALYVLDQSSGTKLMMWQKESREWSP  284 (352)
Q Consensus       210 ~~g-~iyv~GG~~~~~~~~~i~~yd~~~~~W~~-~~~~~~~~~~~~~~~~---~~~l~~~gg~~~~~v~~yd~~~~~W~~  284 (352)
                      .++ .+++.|+.++     .+..||..+.+-.. +... ........+..   ++++++.|+.++ .|.+||..+++-  
T Consensus       179 ~~~~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~l~sg~~dg-~v~~wd~~~~~~--  249 (344)
T 4gqb_B          179 PHKDSVFLSCSEDN-----RILLWDTRCPKPASQIGCS-APGYLPTSLAWHPQQSEVFVFGDENG-TVSLVDTKSTSC--  249 (344)
T ss_dssp             SSCTTEEEEEETTS-----CEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEETTS-EEEEEESCC--C--
T ss_pred             CCCCCceeeecccc-----ccccccccccceeeeeecc-eeeccceeeeecCCCCcceEEeccCC-cEEEEECCCCcE--
Confidence            233 5777766553     47788887765432 2211 11111112222   556777787766 899999986542  


Q ss_pred             ccCCCCCcCCCCceEEE-eC-CEEEEEcCCce-EEEEEcCCc
Q 045821          285 VGRLSTLLTRPPCKLVA-IG-KTIFVIGKGCS-AVVIDVGNI  323 (352)
Q Consensus       285 ~~~~~~~~~~~~~~~~~-~~-~~i~v~gG~~~-~~~~d~~~~  323 (352)
                      +..+.. ....-.+++. .+ .++++-|+.+. +.++|....
T Consensus       250 ~~~~~~-h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~  290 (344)
T 4gqb_B          250 VLSSAV-HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS  290 (344)
T ss_dssp             CEEEEC-CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred             EEEEcC-CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence            111111 0111112222 13 35555555543 557887654

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=96.18  E-value=0.00071  Score=57.45  Aligned_cols=41  Identities=17%  Similarity=0.301  Sum_probs=37.7

Q ss_pred             ccCCCcHHHHHHhhccCccccchhhhhhhhhhcccccChhh
Q 045821           17 LISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEW   57 (352)
Q Consensus        17 ~~~~lp~dl~~~il~r~p~~~~~~l~~v~k~W~~l~~s~~~   57 (352)
                      .+..||.|++..||+.|++++++++..|||.|+.+...+.+
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~L   44 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPIL   44 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchH
Confidence            46679999999999999999999999999999999888865

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.17  E-value=1  Score=43.50  Aligned_cols=118  Identities=16%  Similarity=0.149  Sum_probs=72.5

Q ss_pred             EEEECCEEEEEeCCCCCCCCCCeEEEEECCCCe--eEecCCCCCc--------ceeeeeEEECCEEEEEeCCCCCCceEE
Q 045821          115 FEVLGKNAYLLGGCGWSEDATSEVYCYDASMNT--WTDAAPMSTA--------RCYFPCGVLNQKIYCIGGLGDTHSWDV  184 (352)
Q Consensus       115 ~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~gG~~~~~~v~~  184 (352)
                      -++.++.||+...       ...++.+|..|++  |+.-...+..        ......++.+++||+....   ..+..
T Consensus        62 P~v~~g~vyv~~~-------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d---g~l~a  131 (668)
T 1kv9_A           62 PLFHDGVIYTSMS-------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLD---GRLIA  131 (668)
T ss_dssp             CEEETTEEEEEEG-------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTT---SEEEE
T ss_pred             CEEECCEEEEECC-------CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCC---CEEEE
Confidence            3567999999854       3578999998876  8765433211        0122355678899886532   67899


Q ss_pred             EeCCCCc--EEEecCCCC-c-ccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCc--eeec
Q 045821          185 YDPRTNN--WKLHTEPNI-F-TEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDS--WLHA  242 (352)
Q Consensus       185 yd~~t~~--W~~~~~~~~-~-~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~--W~~~  242 (352)
                      +|..|++  |+.-...+. . ......++.++.+|+..+.........+..||..+++  |+.-
T Consensus       132 lD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          132 LDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             EETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             EECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            9998875  876432111 1 1112335678998885332221223379999998765  8753

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.14  E-value=0.47  Score=41.03  Aligned_cols=190  Identities=9%  Similarity=0.063  Sum_probs=87.0

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCC--CeeEecCCCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCcEEE
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASM--NTWTDAAPMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNNWKL  194 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t--~~W~~~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~W~~  194 (352)
                      ++..++.|+.+      ..+.+||...  ..+..+..+......-..+.+  ++.+++.|+.+  ..+.+||..+..|+.
T Consensus       118 ~g~~las~s~D------~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D--~~i~iW~~~~~~~~~  189 (330)
T 2hes_X          118 DGYYLATCSRD------KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD--DTVRIWKDYDDDWEC  189 (330)
T ss_dssp             TSCEEEEEETT------SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETT--SCEEEEEEETTEEEE
T ss_pred             CCCEEEEEeCC------CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCC--CeEEEEECCCCCeeE
Confidence            45566666543      4577888742  233333222111111112222  46667777765  678888888777765


Q ss_pred             ecCCCCcccceeEEEE--C--CEEEEEccCCCCCCceEEEEEeCC------CCceeecCCCCC-CCCCCcEEEE-CCEEE
Q 045821          195 HTEPNIFTEIEDSFVM--D--GKIYIRCSASAATSHVCALVYEPS------TDSWLHADANMA-SGWRGPAVVV-DDALY  262 (352)
Q Consensus       195 ~~~~~~~~~~~~~~~~--~--g~iyv~GG~~~~~~~~~i~~yd~~------~~~W~~~~~~~~-~~~~~~~~~~-~~~l~  262 (352)
                      +..+.........+.+  +  +...+.|+.++     .+..||..      ...|........ +...-..+.. .+.++
T Consensus       190 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~-----~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l  264 (330)
T 2hes_X          190 VAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS-----TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLI  264 (330)
T ss_dssp             EEEECCCSSCEEEEEECCSSSSCEEEEEETTS-----CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCE
T ss_pred             EEEccCCCCcEEEEEecCCCCeeEEEEEeCCC-----eEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEE
Confidence            5433221111112222  2  34555555442     23334332      223443322111 1111111222 34456


Q ss_pred             EEecCCCCeEEEEeCCCCceEEccCCCCCcCC-CCceEEE--e-CCEEEEEcCCce-EEEEEcCC
Q 045821          263 VLDQSSGTKLMMWQKESREWSPVGRLSTLLTR-PPCKLVA--I-GKTIFVIGKGCS-AVVIDVGN  322 (352)
Q Consensus       263 ~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~-~~~~~~~--~-~~~i~v~gG~~~-~~~~d~~~  322 (352)
                      +.++.++ .+.+||..++.|..+......... ...++..  . ++++++-|+.+. +.++|+++
T Consensus       265 ~s~~~dg-~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          265 ASVGADG-VLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEEETTS-CEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EEEeCCC-EEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            6666665 899999988888665432111111 1112221  1 456777777665 44777654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=96.11  E-value=0.57  Score=41.26  Aligned_cols=191  Identities=4%  Similarity=-0.071  Sum_probs=90.9

Q ss_pred             ECCEEEEEeCCCCCCCCCCeEEEEECCCCe-------eEecCCCCCcceeeeeEEEC----C---EEEEEeCCCCCCceE
Q 045821          118 LGKNAYLLGGCGWSEDATSEVYCYDASMNT-------WTDAAPMSTARCYFPCGVLN----Q---KIYCIGGLGDTHSWD  183 (352)
Q Consensus       118 ~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~-------W~~~~~~~~~r~~~~~~~~~----~---~iyv~gG~~~~~~v~  183 (352)
                      +...+++.|+.      ...+.+||..+.+       -..+.....+. ......-+    +   ..++.|+.+  ..+.
T Consensus        24 ~~~~~l~s~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~g~~~~~l~s~~~d--g~i~   94 (397)
T 1sq9_A           24 ACNSFTVSCSG------DGYLKVWDNKLLDNENPKDKSYSHFVHKSGL-HHVDVLQAIERDAFELCLVATTSFS--GDLL   94 (397)
T ss_dssp             ECSSEEEEEET------TSEEEEEESBCCTTCCGGGGEEEEECCTTCE-EEEEEEEEEETTTEEEEEEEEEETT--SCEE
T ss_pred             ecCCeEEEEcC------CCEEEEEECCCcccccCCCcceEEecCCCcE-EEEEEecccccCCccccEEEEEcCC--CCEE
Confidence            34455556653      2467888887765       22222111111 11111224    6   777777765  6788


Q ss_pred             EEeCCCCc------EEEecCCCC----cccceeEEE----ECCEE-EEEccCCCCCCceEEEEEeCCC------Cc---e
Q 045821          184 VYDPRTNN------WKLHTEPNI----FTEIEDSFV----MDGKI-YIRCSASAATSHVCALVYEPST------DS---W  239 (352)
Q Consensus       184 ~yd~~t~~------W~~~~~~~~----~~~~~~~~~----~~g~i-yv~GG~~~~~~~~~i~~yd~~~------~~---W  239 (352)
                      +||..+..      +..+.....    .........    -++.. ++.|+.++     .+..||..+      .+   |
T Consensus        95 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~  169 (397)
T 1sq9_A           95 FYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG-----TTYIWKFHPFADESNSLTLNW  169 (397)
T ss_dssp             EEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS-----CEEEEEEESSSSHHHHTTTCC
T ss_pred             EEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC-----cEEEEeCCccccccccceeec
Confidence            89888776      666653321    112222233    35666 66665542     356666554      21   1


Q ss_pred             e---ecCC----CCCCCCCCcEE--EECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCc---CCCCceEEE-eCCEE
Q 045821          240 L---HADA----NMASGWRGPAV--VVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLL---TRPPCKLVA-IGKTI  306 (352)
Q Consensus       240 ~---~~~~----~~~~~~~~~~~--~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~---~~~~~~~~~-~~~~i  306 (352)
                      .   .+..    ..........+  .-++ +++.|+.++ .+.+||..+.+-...-......   .....++.. .++++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~  247 (397)
T 1sq9_A          170 SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNG-TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL  247 (397)
T ss_dssp             CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTS-EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE
T ss_pred             cCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCC-cEEEEECCCCceeEEEeccccccccCCccceEEECCCCCE
Confidence            1   1100    00011111122  2356 666676655 8999999876543222110000   011122222 25566


Q ss_pred             EEEcCCc----eEEEEEcCCcc
Q 045821          307 FVIGKGC----SAVVIDVGNIG  324 (352)
Q Consensus       307 ~v~gG~~----~~~~~d~~~~~  324 (352)
                      ++.|+.+    .+.+||+.+..
T Consensus       248 l~~~~~d~~~g~i~i~d~~~~~  269 (397)
T 1sq9_A          248 LAIAHDSNSFGCITLYETEFGE  269 (397)
T ss_dssp             EEEEEEETTEEEEEEEETTTCC
T ss_pred             EEEEecCCCCceEEEEECCCCc
Confidence            6666654    56689987643

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.09  E-value=0.98  Score=42.67  Aligned_cols=118  Identities=14%  Similarity=0.223  Sum_probs=71.1

Q ss_pred             EEECCEEEEEeCCCCCCCCCCeEEEEEC-CCCe--eEecCCCCCc--------ceeeeeEEECCEEEEEeCCCCCCceEE
Q 045821          116 EVLGKNAYLLGGCGWSEDATSEVYCYDA-SMNT--WTDAAPMSTA--------RCYFPCGVLNQKIYCIGGLGDTHSWDV  184 (352)
Q Consensus       116 ~~~~~~iyv~GG~~~~~~~~~~~~~~d~-~t~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~gG~~~~~~v~~  184 (352)
                      ++.++.||+....      ...++.+|. .+++  |+.-......        ......++.+++||+....   ..+..
T Consensus        59 ~v~~g~vyv~~~~------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d---g~l~a  129 (571)
T 2ad6_A           59 LVIGDMMYVHSAF------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQAN---GHLLA  129 (571)
T ss_dssp             EEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTT---SEEEE
T ss_pred             EEECCEEEEEeCC------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCC---CEEEE
Confidence            5669999998542      356899999 7775  8764432211        1123456678999987542   57899


Q ss_pred             EeCCCC--cEEEecCCCCc--ccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCc--eeec
Q 045821          185 YDPRTN--NWKLHTEPNIF--TEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDS--WLHA  242 (352)
Q Consensus       185 yd~~t~--~W~~~~~~~~~--~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~--W~~~  242 (352)
                      +|..|+  .|+.-......  ......++.++++|+..+..+......+..||..+.+  |+.-
T Consensus       130 lD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          130 LDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             EETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             EECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence            999887  48753221111  1112334578999886432111112378999987654  8643

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=96.08  E-value=0.066  Score=46.66  Aligned_cols=191  Identities=10%  Similarity=0.078  Sum_probs=88.1

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEe-cCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEec
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTD-AAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHT  196 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~-~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~  196 (352)
                      ++..++.|+.+      ..+.+||..+++-.. +.....+ . .+++.. ++..++.++.+  ..+.+||..+.+-...-
T Consensus        43 ~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~h~~~-v-~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~  112 (369)
T 3zwl_B           43 EGDLLFSCSKD------SSASVWYSLNGERLGTLDGHTGT-I-WSIDVDCFTKYCVTGSAD--YSIKLWDVSNGQCVATW  112 (369)
T ss_dssp             TSCEEEEEESS------SCEEEEETTTCCEEEEECCCSSC-E-EEEEECTTSSEEEEEETT--TEEEEEETTTCCEEEEE
T ss_pred             CCCEEEEEeCC------CEEEEEeCCCchhhhhhhhcCCc-E-EEEEEcCCCCEEEEEeCC--CeEEEEECCCCcEEEEe
Confidence            34455555432      357888887765322 2211111 1 112222 45666666654  67899999887654432


Q ss_pred             CCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCc----eeecCCCC-----CCCC--CCcEE--EECCEEEE
Q 045821          197 EPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDS----WLHADANM-----ASGW--RGPAV--VVDDALYV  263 (352)
Q Consensus       197 ~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~----W~~~~~~~-----~~~~--~~~~~--~~~~~l~~  263 (352)
                      .. ..........-+++.++.++.........+..||..+..    +.......     ....  ....+  ..+++.++
T Consensus       113 ~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  191 (369)
T 3zwl_B          113 KS-PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYII  191 (369)
T ss_dssp             EC-SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEE
T ss_pred             ec-CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEE
Confidence            21 111111222235666665444311122246666654332    21111100     0000  11112  23566777


Q ss_pred             EecCCCCeEEEEeCCC-CceE-EccCCCCCcCCCCceEEE-eCCEEEEEcCCc-eEEEEEcCCccc
Q 045821          264 LDQSSGTKLMMWQKES-REWS-PVGRLSTLLTRPPCKLVA-IGKTIFVIGKGC-SAVVIDVGNIGN  325 (352)
Q Consensus       264 ~gg~~~~~v~~yd~~~-~~W~-~~~~~~~~~~~~~~~~~~-~~~~i~v~gG~~-~~~~~d~~~~~w  325 (352)
                      +|+.++ .+.+||..+ ..-. .+....    ....++.. .++..++.++.+ .+.+||..+...
T Consensus       192 ~~~~dg-~i~i~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  252 (369)
T 3zwl_B          192 AGHKDG-KISKYDVSNNYEYVDSIDLHE----KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV  252 (369)
T ss_dssp             EEETTS-EEEEEETTTTTEEEEEEECCS----SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             EEcCCC-EEEEEECCCCcEeEEEEecCC----CceeEEEECCCCCEEEEecCCceEEEEECCCCce
Confidence            777666 899999987 3322 222111    11112222 245555555444 466788876543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=96.07  E-value=0.15  Score=43.43  Aligned_cols=188  Identities=7%  Similarity=0.019  Sum_probs=87.6

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCc-ceeeeeEEE---CCEEEEEeCCCCCCceEEEeCCCCcEEE
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTA-RCYFPCGVL---NQKIYCIGGLGDTHSWDVYDPRTNNWKL  194 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~-r~~~~~~~~---~~~iyv~gG~~~~~~v~~yd~~t~~W~~  194 (352)
                      ++..++.|+.+      ..+.+||..+.+.+.+..+..- ..-.+++..   ++.+++.|+.+  ..+.++|..+..|..
T Consensus        20 ~g~~las~s~D------~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D--~~v~iWd~~~~~~~~   91 (297)
T 2pm7_B           20 YGKRMATCSSD------KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD--GKVMIWKEENGRWSQ   91 (297)
T ss_dssp             TSSEEEEEETT------SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT--TEEEEEEBSSSCBCC
T ss_pred             CCCEEEEEeCC------CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC--CEEEEEEcCCCceEE
Confidence            45556666543      3477778765433222222110 011112221   25667777765  678899998887755


Q ss_pred             ecCCCCcccceeEEEE--C--CEEEEEccCCCCCCceEEEEEeCCCC-ceeecCCCCCCCCCCcEEEE------------
Q 045821          195 HTEPNIFTEIEDSFVM--D--GKIYIRCSASAATSHVCALVYEPSTD-SWLHADANMASGWRGPAVVV------------  257 (352)
Q Consensus       195 ~~~~~~~~~~~~~~~~--~--g~iyv~GG~~~~~~~~~i~~yd~~~~-~W~~~~~~~~~~~~~~~~~~------------  257 (352)
                      +............+.+  +  +.+++.|+.++     .+..||..+. .+..... ..+......+..            
T Consensus        92 ~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~-----~v~~wd~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~~~~~~  165 (297)
T 2pm7_B           92 IAVHAVHSASVNSVQWAPHEYGPMLLVASSDG-----KVSVVEFKENGTTSPIII-DAHAIGVNSASWAPATIEEDGEHN  165 (297)
T ss_dssp             CEEECCCSSCEEEEEECCGGGCSEEEEEETTS-----EEEEEEBCSSSCBCCEEE-ECCSSCEEEEEECCCC--------
T ss_pred             EEEeecCCCceeEEEeCcCCCCcEEEEEECCC-----cEEEEEecCCCceeeeee-ecccCccceEeecCCcccccccCC
Confidence            4322211111122222  2  55666655442     4667776554 2211100 000000001111            


Q ss_pred             ---CCEEEEEecCCCCeEEEEeCCCCc--eEEccCCCCCcCCCCceEEE-eC---CEEEEEcCCce-EEEEEcCC
Q 045821          258 ---DDALYVLDQSSGTKLMMWQKESRE--WSPVGRLSTLLTRPPCKLVA-IG---KTIFVIGKGCS-AVVIDVGN  322 (352)
Q Consensus       258 ---~~~l~~~gg~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~-~~---~~i~v~gG~~~-~~~~d~~~  322 (352)
                         ++++++.|+.++ .+.+||..+..  +..+..+..- ...-.++.. .+   +.+++.|+.+. +.++|++.
T Consensus       166 ~~~~~~~l~sgs~D~-~v~lwd~~~~~~~~~~~~~l~~H-~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          166 GTKESRKFVTGGADN-LVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             ----CCEEEEEETTS-CEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             CCCCcceEEEEcCCC-cEEEEEEcCCCceEEEEEEecCC-CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence               245677777766 78888876543  5444333221 111112222 12   36666666554 55788765

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=96.06  E-value=0.84  Score=41.68  Aligned_cols=136  Identities=14%  Similarity=0.151  Sum_probs=81.5

Q ss_pred             CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCcee------
Q 045821          167 NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWL------  240 (352)
Q Consensus       167 ~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~------  240 (352)
                      ++++|++.|    +..+.||..+++...- ..+......++...+|++|++-|..       .++||..+.+-.      
T Consensus       158 ~~~~yfFkG----~~yw~yd~~~~~~~~~-~w~gi~~iDAA~~~~g~~YfFkG~~-------y~rfd~~~~~v~~gyPk~  225 (460)
T 1qhu_A          158 DEGILFFQG----NRKWFWDLTTGTKKER-SWPAVGNCTSALRWLGRYYCFQGNQ-------FLRFNPVSGEVPPGYPLD  225 (460)
T ss_dssp             SSEEEEEET----TEEEEEETTTTEEEEE-CCTTSCCCSEEEEETTEEEEEETTE-------EEEECTTTCCCCTTCCEE
T ss_pred             CCeEEEEec----ccEEEEecccceeecc-cCCCCCccchheeeCCceEEEECCE-------EEEEcCccCcccCCCCcc
Confidence            678899998    7789999988765432 1221112345666789999996654       788887654322      


Q ss_pred             ------ecCCC-----------------CCC-CCCCcEEE--ECCEEEEEecCCCCeEEEEeCCCCceE--Ecc----CC
Q 045821          241 ------HADAN-----------------MAS-GWRGPAVV--VDDALYVLDQSSGTKLMMWQKESREWS--PVG----RL  288 (352)
Q Consensus       241 ------~~~~~-----------------~~~-~~~~~~~~--~~~~l~~~gg~~~~~v~~yd~~~~~W~--~~~----~~  288 (352)
                            -++..                 .+. ....-+++  .+|++|++-|.   ..|++|...+.+.  .+.    .+
T Consensus       226 is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg~---~yWR~~~~~~~~~p~~Is~~Wpgl  302 (460)
T 1qhu_A          226 VRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSGS---HYWRLDTNRDGWHSWPIAHQWPQG  302 (460)
T ss_dssp             HHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEETT---EEEECTTGGGCCCCEEGGGTCTTS
T ss_pred             hhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeCC---EEEEEecCCCCcCccchhhhccCC
Confidence                  11100                 000 11122343  46899999886   7899987654332  121    22


Q ss_pred             CCCcCCCCceEEEeCCEEEEEcCCceEEEEEcCC
Q 045821          289 STLLTRPPCKLVAIGKTIFVIGKGCSAVVIDVGN  322 (352)
Q Consensus       289 ~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~d~~~  322 (352)
                      |.    .--++...++++|+|-|. ..+.|+..+
T Consensus       303 P~----~IDAAf~~~~~~yfFkG~-~yw~f~~~~  331 (460)
T 1qhu_A          303 PS----TVDAAFSWEDKLYLIQDT-KVYVFLTKG  331 (460)
T ss_dssp             CS----SCSEEEEETTEEEEEETT-EEEEEECSB
T ss_pred             CC----CCcEEEEECCeEEEEeCC-EEEEEeCCC
Confidence            32    223444557899999876 577788764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=96.06  E-value=0.73  Score=40.95  Aligned_cols=147  Identities=10%  Similarity=0.002  Sum_probs=74.2

Q ss_pred             CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEE-ECCE-EEEEccCCCCCCceEEEEEeCCCCce--eec
Q 045821          167 NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFV-MDGK-IYIRCSASAATSHVCALVYEPSTDSW--LHA  242 (352)
Q Consensus       167 ~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~g~-iyv~GG~~~~~~~~~i~~yd~~~~~W--~~~  242 (352)
                      +++.++.|+.+  ..+.+||..+..-..............++. -++. +++.|+.++     .+..||..+.+-  ..+
T Consensus       258 ~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg-----~i~vwd~~~~~~~~~~~  330 (420)
T 3vl1_A          258 YGKYVIAGHVS--GVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENG-----MLAQWDLRSPECPVGEF  330 (420)
T ss_dssp             TTEEEEEEETT--SCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTS-----EEEEEETTCTTSCSEEE
T ss_pred             CCCEEEEEcCC--CeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCC-----eEEEEEcCCCcCchhhh
Confidence            56677777655  678999998875322211111111112222 2454 666665542     588889876532  222


Q ss_pred             CCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCc-eEEccCCCCC-----c--CCCCceEEEeCC---EEEEEcC
Q 045821          243 DANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESRE-WSPVGRLSTL-----L--TRPPCKLVAIGK---TIFVIGK  311 (352)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~-W~~~~~~~~~-----~--~~~~~~~~~~~~---~i~v~gG  311 (352)
                      ..... .........++++++.++.++ .+.+||..+.. -..+......     .  .....+...-+.   .|+..|.
T Consensus       331 ~~~~~-~~v~~~~~~~~~~l~s~~~d~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~  408 (420)
T 3vl1_A          331 LINEG-TPINNVYFAAGALFVSSGFDT-SIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGK  408 (420)
T ss_dssp             EESTT-SCEEEEEEETTEEEEEETTTE-EEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEET
T ss_pred             hccCC-CCceEEEeCCCCEEEEecCCc-cEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcC
Confidence            11111 111112345788888887766 88899876521 0000000000     0  011112222233   5888887


Q ss_pred             CceEEEEEcCC
Q 045821          312 GCSAVVIDVGN  322 (352)
Q Consensus       312 ~~~~~~~d~~~  322 (352)
                      ...+.+|+++.
T Consensus       409 ~g~~~~~~~~~  419 (420)
T 3vl1_A          409 NNFCALYNLSN  419 (420)
T ss_dssp             TTEEEEEESCC
T ss_pred             CceEEEEeccC
Confidence            77777888764

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=96.06  E-value=0.6  Score=39.95  Aligned_cols=145  Identities=10%  Similarity=0.034  Sum_probs=69.3

Q ss_pred             EEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCC
Q 045821          169 KIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMAS  248 (352)
Q Consensus       169 ~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~  248 (352)
                      .+++.++.+  ..+.+||..+.+....-......-...+..-++++++.|+.++     .+..||..+.+-...-.  ..
T Consensus       186 ~~~~s~~~d--~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg-----~i~iwd~~~~~~~~~~~--~~  256 (340)
T 4aow_A          186 PIIVSCGWD--KLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG-----QAMLWDLNEGKHLYTLD--GG  256 (340)
T ss_dssp             CEEEEEETT--SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTC-----EEEEEETTTTEEEEEEE--CS
T ss_pred             cEEEEEcCC--CEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCC-----eEEEEEeccCceeeeec--CC
Confidence            455666554  6788999988765433211111111111222677777766553     57778887654322111  00


Q ss_pred             CCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceEEc-cCCC-C-Cc---CCCCceEE-EeCCEEEEEcCCce-EEEEEc
Q 045821          249 GWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPV-GRLS-T-LL---TRPPCKLV-AIGKTIFVIGKGCS-AVVIDV  320 (352)
Q Consensus       249 ~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~-~~~~-~-~~---~~~~~~~~-~~~~~i~v~gG~~~-~~~~d~  320 (352)
                      ..........+..++.++.++ .+.+||.++..-... .... . ..   ...-.+++ ..+++.++.|+.+. +.++|+
T Consensus       257 ~~v~~~~~~~~~~~~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~  335 (340)
T 4aow_A          257 DIINALCFSPNRYWLCAATGP-SIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV  335 (340)
T ss_dssp             SCEEEEEECSSSSEEEEEETT-EEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             ceEEeeecCCCCceeeccCCC-EEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence            001111222333444555544 899999887654322 1110 0 00   01111222 23566666676654 557888


Q ss_pred             CCc
Q 045821          321 GNI  323 (352)
Q Consensus       321 ~~~  323 (352)
                      ++.
T Consensus       336 ~tG  338 (340)
T 4aow_A          336 TIG  338 (340)
T ss_dssp             EC-
T ss_pred             CCc
Confidence            764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=96.04  E-value=0.77  Score=43.06  Aligned_cols=143  Identities=12%  Similarity=0.085  Sum_probs=73.6

Q ss_pred             EEEEeCCCCCCceEEEeCCCCcEEEecCCCCccc---ce-eEEE-EC-CEEEEEccCCCCCCceEEEEEeCCCCceeecC
Q 045821          170 IYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTE---IE-DSFV-MD-GKIYIRCSASAATSHVCALVYEPSTDSWLHAD  243 (352)
Q Consensus       170 iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~---~~-~~~~-~~-g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~  243 (352)
                      +++.|+.+  ..+.+||..+.+-...  +.....   .. .+.. -+ +++++.|+.++     .+..||..+.+....-
T Consensus       175 ~l~~~~~d--~~v~vwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~  245 (615)
T 1pgu_A          175 RSMTVGDD--GSVVFYQGPPFKFSAS--DRTHHKQGSFVRDVEFSPDSGEFVITVGSDR-----KISCFDGKSGEFLKYI  245 (615)
T ss_dssp             EEEEEETT--TEEEEEETTTBEEEEE--ECSSSCTTCCEEEEEECSTTCCEEEEEETTC-----CEEEEETTTCCEEEEC
T ss_pred             EEEEEeCC--CcEEEEeCCCcceeee--ecccCCCCceEEEEEECCCCCCEEEEEeCCC-----eEEEEECCCCCEeEEe
Confidence            56666654  6788999877653322  221111   11 2222 25 67777765543     5888998776644321


Q ss_pred             -CCC-CCCCCCcEEEE-CCEEEEEecCCCCeEEEEeCCCCceEEccCCC-CCcCCCCceEEE-eCCEEEEEcCCceEEEE
Q 045821          244 -ANM-ASGWRGPAVVV-DDALYVLDQSSGTKLMMWQKESREWSPVGRLS-TLLTRPPCKLVA-IGKTIFVIGKGCSAVVI  318 (352)
Q Consensus       244 -~~~-~~~~~~~~~~~-~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~-~~~~~~~~~~~~-~~~~i~v~gG~~~~~~~  318 (352)
                       ... .....-..+.+ ++..++.++.++ .+.+||..+.+....-..+ ........++.. .++.+++.+....+.+|
T Consensus       246 ~~~~~~~~~~v~~~~~~~~~~l~~~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~  324 (615)
T 1pgu_A          246 EDDQEPVQGGIFALSWLDSQKFATVGADA-TIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY  324 (615)
T ss_dssp             CBTTBCCCSCEEEEEESSSSEEEEEETTS-EEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEE
T ss_pred             cccccccCCceEEEEEcCCCEEEEEcCCC-cEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEE
Confidence             100 11111112222 777777777665 8999999877654332222 111111222222 34444444444456688


Q ss_pred             EcCC
Q 045821          319 DVGN  322 (352)
Q Consensus       319 d~~~  322 (352)
                      |+..
T Consensus       325 d~~~  328 (615)
T 1pgu_A          325 ELGH  328 (615)
T ss_dssp             ETTE
T ss_pred             ECCC
Confidence            8776

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.04  E-value=0.7  Score=40.56  Aligned_cols=209  Identities=8%  Similarity=0.056  Sum_probs=115.4

Q ss_pred             eEEEecCCCCCCCeeEeccCCCcccCCcceEEEE--ECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCC--CCCcce
Q 045821           84 CCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEV--LGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAP--MSTARC  159 (352)
Q Consensus        84 ~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~--~~~~r~  159 (352)
                      .+..+++  .......+....     ..-.+++.  .++.||+..-      ....++++++.......+..  +..|  
T Consensus        54 ~I~~i~~--~g~~~~~~~~~~-----~~~~~l~~d~~~~~ly~~D~------~~~~I~r~~~~g~~~~~~~~~~~~~p--  118 (349)
T 3v64_C           54 DIRQVLP--HRSEYTLLLNNL-----ENAIALDFHHRRELVFWSDV------TLDRILRANLNGSNVEEVVSTGLESP--  118 (349)
T ss_dssp             CEEEECT--TSCCEEEEECSC-----SCEEEEEEETTTTEEEEEET------TTTEEEEEETTSCSCEEEECSSCSCC--
T ss_pred             ceEEEeC--CCCeeEEeecCC-----CceEEEEEeccccEEEEEec------cCCceEEEecCCCCceEEEeCCCCCc--
Confidence            3566677  666665554322     11233333  3678998852      24678999988765444322  2222  


Q ss_pred             eeeeEE--ECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCC
Q 045821          160 YFPCGV--LNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPS  235 (352)
Q Consensus       160 ~~~~~~--~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~  235 (352)
                       .+.++  .++.||+.-...  ..++++++....-+.+.... ...-...++.  ++.||+..-..    ...|+++++.
T Consensus       119 -~glavd~~~g~ly~~d~~~--~~I~~~~~dG~~~~~l~~~~-l~~P~~iavdp~~g~ly~td~~~----~~~I~r~~~d  190 (349)
T 3v64_C          119 -GGLAVDWVHDKLYWTDSGT--SRIEVANLDGAHRKVLLWQS-LEKPRAIALHPMEGTIYWTDWGN----TPRIEASSMD  190 (349)
T ss_dssp             -CEEEEETTTTEEEEEETTT--TEEEEEETTSCSCEEEECTT-CSCEEEEEEETTTTEEEEEECSS----SCEEEEEETT
T ss_pred             -cEEEEecCCCeEEEEcCCC--CeEEEEcCCCCceEEEEeCC-CCCcceEEEecCcCeEEEeccCC----CCEEEEEeCC
Confidence             22333  368999986543  67889998765433332111 1111233443  68999984211    2478999886


Q ss_pred             CCceeecCCCCCCCC-CCcEEE-ECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEc-CC
Q 045821          236 TDSWLHADANMASGW-RGPAVV-VDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIG-KG  312 (352)
Q Consensus       236 ~~~W~~~~~~~~~~~-~~~~~~-~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~g-G~  312 (352)
                      ...-+.+... ...+ .+.++. .++.||+.....+ .|+++|++...-..+....   ...-.++++.++.||+.. +.
T Consensus       191 G~~~~~~~~~-~~~~PnGla~d~~~~~lY~aD~~~~-~I~~~~~dG~~~~~~~~~~---~~~P~giav~~~~ly~td~~~  265 (349)
T 3v64_C          191 GSGRRIIADT-HLFWPNGLTIDYAGRRMYWVDAKHH-VIERANLDGSHRKAVISQG---LPHPFAITVFEDSLYWTDWHT  265 (349)
T ss_dssp             SCSCEESCCS-SCSCEEEEEEETTTTEEEEEETTTT-EEEEEETTSCSCEEEECSS---CSSEEEEEEETTEEEEEETTT
T ss_pred             CCCcEEEEEC-CCCCcceEEEeCCCCEEEEEECCCC-EEEEEeCCCCceEEEEeCC---CCCceEEEEECCEEEEecCCC
Confidence            5443333211 0111 111222 3788999876544 8999998864433332211   123356777889999875 44


Q ss_pred             ceEEEEEc
Q 045821          313 CSAVVIDV  320 (352)
Q Consensus       313 ~~~~~~d~  320 (352)
                      ..+..+|.
T Consensus       266 ~~V~~~~~  273 (349)
T 3v64_C          266 KSINSANK  273 (349)
T ss_dssp             TEEEEEET
T ss_pred             CeEEEEEc
Confidence            45556764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=96.03  E-value=0.35  Score=45.43  Aligned_cols=190  Identities=12%  Similarity=0.037  Sum_probs=86.7

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCC------eeEecCCCCCcceeeeeEEE--CCEEEEEeCCCCC--CceEEEeCC
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMN------TWTDAAPMSTARCYFPCGVL--NQKIYCIGGLGDT--HSWDVYDPR  188 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~------~W~~~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~--~~v~~yd~~  188 (352)
                      ++..++.|+.      ...+.+||..++      ....+..+...........+  +++..+.++.+..  ..+..+|. 
T Consensus        77 ~~~~l~s~~~------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~-  149 (615)
T 1pgu_A           77 GSQYLCSGDE------SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS-  149 (615)
T ss_dssp             TCCEEEEEET------TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT-
T ss_pred             CCCEEEEecC------CCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC-
Confidence            4566666654      245778887644      22222222111111111222  4555555554322  46677773 


Q ss_pred             CCcEEEecCCCCcccceeEEE--ECCE-EEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCC-CCcEE--EEC-CEE
Q 045821          189 TNNWKLHTEPNIFTEIEDSFV--MDGK-IYIRCSASAATSHVCALVYEPSTDSWLHADANMASGW-RGPAV--VVD-DAL  261 (352)
Q Consensus       189 t~~W~~~~~~~~~~~~~~~~~--~~g~-iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~-~~~~~--~~~-~~l  261 (352)
                       ..-..  .+.........+.  -++. +++.|+.++     .+..||..+.+-...-....... .-..+  .-+ ++.
T Consensus       150 -~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  221 (615)
T 1pgu_A          150 -GNSLG--EVSGHSQRINACHLKQSRPMRSMTVGDDG-----SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEF  221 (615)
T ss_dssp             -CCEEE--ECCSCSSCEEEEEECSSSSCEEEEEETTT-----EEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCE
T ss_pred             -CCcce--eeecCCccEEEEEECCCCCcEEEEEeCCC-----cEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCE
Confidence             22211  1111111111222  2443 566655442     57788876654332211111100 11122  235 677


Q ss_pred             EEEecCCCCeEEEEeCCCCceEEcc-CCCCCcCCCCceEEEeCCEEEEEcCCc-eEEEEEcCCcc
Q 045821          262 YVLDQSSGTKLMMWQKESREWSPVG-RLSTLLTRPPCKLVAIGKTIFVIGKGC-SAVVIDVGNIG  324 (352)
Q Consensus       262 ~~~gg~~~~~v~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~i~v~gG~~-~~~~~d~~~~~  324 (352)
                      ++.|+.++ .+.+||..+.+....- ...........++...+++.++.++.+ .+.+||+.+..
T Consensus       222 l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~  285 (615)
T 1pgu_A          222 VITVGSDR-KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK  285 (615)
T ss_dssp             EEEEETTC-CEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTE
T ss_pred             EEEEeCCC-eEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCc
Confidence            77777666 8999999876644322 100011111122222266666666554 46689987644

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=96.02  E-value=0.3  Score=41.62  Aligned_cols=213  Identities=8%  Similarity=-0.054  Sum_probs=104.5

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-CCEEEEEeCCCCCCCCCCeEEEEECCCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-GKNAYLLGGCGWSEDATSEVYCYDASMN  146 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~  146 (352)
                      ++.||++..    ....++.||+  .++....+. .+.    .. .+++.. ++.+|+..        ...+++||+.++
T Consensus        24 ~~~l~~~d~----~~~~i~~~d~--~~~~~~~~~-~~~----~~-~~i~~~~dG~l~v~~--------~~~l~~~d~~~g   83 (297)
T 3g4e_A           24 SNSLLFVDI----PAKKVCRWDS--FTKQVQRVT-MDA----PV-SSVALRQSGGYVATI--------GTKFCALNWKEQ   83 (297)
T ss_dssp             TTEEEEEET----TTTEEEEEET--TTCCEEEEE-CSS----CE-EEEEEBTTSSEEEEE--------TTEEEEEETTTT
T ss_pred             CCEEEEEEC----CCCEEEEEEC--CCCcEEEEe-CCC----ce-EEEEECCCCCEEEEE--------CCeEEEEECCCC
Confidence            567887743    2335778899  777654443 221    11 222222 55666653        247899999999


Q ss_pred             eeEecCCCCC--cceeeeeEEE--CCEEEEEeCCC---------CCCceEEEeCCCCcEEEecCCCCcccceeEEEE-CC
Q 045821          147 TWTDAAPMST--ARCYFPCGVL--NQKIYCIGGLG---------DTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM-DG  212 (352)
Q Consensus       147 ~W~~~~~~~~--~r~~~~~~~~--~~~iyv~gG~~---------~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g  212 (352)
                      +++.+.....  +........+  ++++|+..-..         ....++++|+.. +...+..  ........+.. ++
T Consensus        84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~--~~~~pngi~~spdg  160 (297)
T 3g4e_A           84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFD--QVDISNGLDWSLDH  160 (297)
T ss_dssp             EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEE--EESBEEEEEECTTS
T ss_pred             cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEee--ccccccceEEcCCC
Confidence            8876654321  2222222223  57887753211         114678888753 3333221  01111122222 44


Q ss_pred             -EEEEEccCCCCCCceEEEEEeC--CCCceee---cCCCCCCCCC--CcEEEECCEEEEEecCCCCeEEEEeCCCCceEE
Q 045821          213 -KIYIRCSASAATSHVCALVYEP--STDSWLH---ADANMASGWR--GPAVVVDDALYVLDQSSGTKLMMWQKESREWSP  284 (352)
Q Consensus       213 -~iyv~GG~~~~~~~~~i~~yd~--~~~~W~~---~~~~~~~~~~--~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~  284 (352)
                       .+|+.....     ..|++||.  .+.....   +.........  +.++..+|.||+..... ..|.+||+++++...
T Consensus       161 ~~lyv~~~~~-----~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~-~~v~~~d~~tG~~~~  234 (297)
T 3g4e_A          161 KIFYYIDSLS-----YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG-GRVIRLDPVTGKRLQ  234 (297)
T ss_dssp             CEEEEEEGGG-----TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT-TEEEEECTTTCCEEE
T ss_pred             CEEEEecCCC-----CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC-CEEEEEcCCCceEEE
Confidence             588874322     35777764  4554321   1110000011  11222367788765333 389999999766543


Q ss_pred             ccCCCCCcCCCCceEEE---eCCEEEEEcCC
Q 045821          285 VGRLSTLLTRPPCKLVA---IGKTIFVIGKG  312 (352)
Q Consensus       285 ~~~~~~~~~~~~~~~~~---~~~~i~v~gG~  312 (352)
                      .-.+|..  . -.+++.   -++.|||....
T Consensus       235 ~i~~p~~--~-~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          235 TVKLPVD--K-TTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             EEECSSS--B-EEEEEEESGGGCEEEEEEBC
T ss_pred             EEECCCC--C-ceEEEEeCCCCCEEEEEcCC
Confidence            3334421  1 122222   12478887643

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=95.99  E-value=0.3  Score=41.58  Aligned_cols=199  Identities=10%  Similarity=0.068  Sum_probs=98.6

Q ss_pred             CCEEEEEeCCCC-CCCCCCeEEEEECCCCeeEecCCC--C-CcceeeeeEEE-C-CEEEEEeCCCCCCceEEEeCCCCcE
Q 045821          119 GKNAYLLGGCGW-SEDATSEVYCYDASMNTWTDAAPM--S-TARCYFPCGVL-N-QKIYCIGGLGDTHSWDVYDPRTNNW  192 (352)
Q Consensus       119 ~~~iyv~GG~~~-~~~~~~~~~~~d~~t~~W~~~~~~--~-~~r~~~~~~~~-~-~~iyv~gG~~~~~~v~~yd~~t~~W  192 (352)
                      ++.+|+...... .......+++||+.++++..+...  . ....-..++.. + +++|+....   ..+.+||+. ++.
T Consensus        28 ~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~---~~l~~~d~~-g~~  103 (314)
T 1pjx_A           28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR---LGLLVVQTD-GTF  103 (314)
T ss_dssp             TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT---TEEEEEETT-SCE
T ss_pred             CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC---CCEEEEeCC-CCE
Confidence            567887721000 001135689999988887655421  0 11111223332 5 788987642   468999998 777


Q ss_pred             EEe-cCCCCc--ccceeEEE--ECCEEEEEccCC----------CCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEE-
Q 045821          193 KLH-TEPNIF--TEIEDSFV--MDGKIYIRCSAS----------AATSHVCALVYEPSTDSWLHADANMASGWRGPAVV-  256 (352)
Q Consensus       193 ~~~-~~~~~~--~~~~~~~~--~~g~iyv~GG~~----------~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~-  256 (352)
                      +.+ ......  ........  -+|++|+.....          .......+++||+. .+...+....... .+.++. 
T Consensus       104 ~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~-~~i~~~~  181 (314)
T 1pjx_A          104 EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFP-NGIAVRH  181 (314)
T ss_dssp             EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSE-EEEEEEE
T ss_pred             EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCc-ceEEEec
Confidence            665 322111  11112222  368899875322          01112478999886 5554432111100 112233 


Q ss_pred             ---ECC-EEEEEecCCCCeEEEEeCC-CCceEEc---cCCCCCcCCCCceEEE-eCCEEEEEc-CCceEEEEEcCCcc
Q 045821          257 ---VDD-ALYVLDQSSGTKLMMWQKE-SREWSPV---GRLSTLLTRPPCKLVA-IGKTIFVIG-KGCSAVVIDVGNIG  324 (352)
Q Consensus       257 ---~~~-~l~~~gg~~~~~v~~yd~~-~~~W~~~---~~~~~~~~~~~~~~~~-~~~~i~v~g-G~~~~~~~d~~~~~  324 (352)
                         -++ .||+..... ..+++||++ +++....   ..++........+++. -++.||+.. +...+..||+++..
T Consensus       182 ~~d~dg~~l~v~~~~~-~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~  258 (314)
T 1pjx_A          182 MNDGRPYQLIVAETPT-KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ  258 (314)
T ss_dssp             CTTSCEEEEEEEETTT-TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS
T ss_pred             ccCCCCCEEEEEECCC-CeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc
Confidence               345 466655433 389999976 4443221   1222110011122332 357788874 44467788887433

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.98  E-value=0.61  Score=40.97  Aligned_cols=192  Identities=8%  Similarity=-0.014  Sum_probs=97.6

Q ss_pred             eeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-CCE-EEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCccee
Q 045821           83 VCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-GKN-AYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCY  160 (352)
Q Consensus        83 ~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~  160 (352)
                      ..++.+|.  .++....+....    .......... ++. |++... .........++.+|..++++..+.. ..+...
T Consensus       168 ~~l~~~d~--~~g~~~~~~~~~----~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~  239 (396)
T 3c5m_A          168 CRLIKVDI--ETGELEVIHQDT----AWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKE-HAEGES  239 (396)
T ss_dssp             EEEEEEET--TTCCEEEEEEES----SCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSC-CCTTEE
T ss_pred             ceEEEEEC--CCCcEEeeccCC----cccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeec-cCCCcc
Confidence            45778888  777776665322    1111222222 243 444432 1111223679999998887777654 221111


Q ss_pred             eeeEEE--CCE-EEEEeCCCCCCc--eEEEeCCCCcEEEecCCCCcccceeEEEE-CCEEEEEccCCC-----------C
Q 045821          161 FPCGVL--NQK-IYCIGGLGDTHS--WDVYDPRTNNWKLHTEPNIFTEIEDSFVM-DGKIYIRCSASA-----------A  223 (352)
Q Consensus       161 ~~~~~~--~~~-iyv~gG~~~~~~--v~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~iyv~GG~~~-----------~  223 (352)
                      .....+  +++ |++.........  ++++|..+++.+.+...+..  . .+..- +|+++++.+...           .
T Consensus       240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~--~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~  316 (396)
T 3c5m_A          240 CTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPC--S-HLMSNFDGSLMVGDGCDAPVDVADADSYNI  316 (396)
T ss_dssp             EEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSE--E-EEEECSSSSEEEEEECCC----------CC
T ss_pred             ccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCC--C-CCccCCCCceEEEecCCcceeecccccccc
Confidence            111222  444 444432222234  99999998887776543321  1 33344 777766643220           1


Q ss_pred             CCceEEEEEeCCCCceeecCCCCCC----------CCCCcEEEECC-EEEEEecCCC-CeEEEEeCCCCceEEc
Q 045821          224 TSHVCALVYEPSTDSWLHADANMAS----------GWRGPAVVVDD-ALYVLDQSSG-TKLMMWQKESREWSPV  285 (352)
Q Consensus       224 ~~~~~i~~yd~~~~~W~~~~~~~~~----------~~~~~~~~~~~-~l~~~gg~~~-~~v~~yd~~~~~W~~~  285 (352)
                      .....++.+|+.+++...+......          ........-++ .|++.....+ ..++.+|..++.++.+
T Consensus       317 ~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~~  390 (396)
T 3c5m_A          317 ENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHLE  390 (396)
T ss_dssp             CCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC---
T ss_pred             CCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccccc
Confidence            1234789999988776655332110          01122333344 5555544333 4788888888776654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.98  E-value=0.7  Score=40.08  Aligned_cols=204  Identities=11%  Similarity=0.150  Sum_probs=103.8

Q ss_pred             CCCCeeEeccCCCcccCCcceEEEE-ECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE-CCEE
Q 045821           93 TRRSWKMIHELPARTLRRKGMGFEV-LGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQKI  170 (352)
Q Consensus        93 ~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~i  170 (352)
                      ...+|+.+......  +...+.+.. -++.+|+.+..       ..+++-+=.-.+|+.+.... +...+.++.. ++.+
T Consensus       107 gG~tW~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~-------g~v~~S~DgG~tW~~~~~~~-~~~~~~~~~~~~~~~  176 (327)
T 2xbg_A          107 GGQSWSQIPLDPKL--PGSPRLIKALGNGSAEMITNV-------GAIYRTKDSGKNWQALVQEA-IGVMRNLNRSPSGEY  176 (327)
T ss_dssp             TTSSCEECCCCTTC--SSCEEEEEEEETTEEEEEETT-------CCEEEESSTTSSEEEEECSC-CCCEEEEEECTTSCE
T ss_pred             CCCCceECccccCC--CCCeEEEEEECCCCEEEEeCC-------ccEEEEcCCCCCCEEeecCC-CcceEEEEEcCCCcE
Confidence            46899998753211  111233333 46788887641       23444322345798876432 2233344433 5667


Q ss_pred             EEEeCCCCCCceEEEe-CCCCcEEEecCCCCcccceeEEE-ECCEEEEEccCCCCCCceEEEEEeC-CCCceeecCCC-C
Q 045821          171 YCIGGLGDTHSWDVYD-PRTNNWKLHTEPNIFTEIEDSFV-MDGKIYIRCSASAATSHVCALVYEP-STDSWLHADAN-M  246 (352)
Q Consensus       171 yv~gG~~~~~~v~~yd-~~t~~W~~~~~~~~~~~~~~~~~-~~g~iyv~GG~~~~~~~~~i~~yd~-~~~~W~~~~~~-~  246 (352)
                      +++|..   ..++.-+ ..-.+|+.+..... .....++. -++.+|+.+...      .++..+. ...+|+.+..+ .
T Consensus       177 ~~~g~~---G~~~~S~d~gG~tW~~~~~~~~-~~~~~~~~~~~g~~~~~~~~G------~~~~s~~D~G~tW~~~~~~~~  246 (327)
T 2xbg_A          177 VAVSSR---GSFYSTWEPGQTAWEPHNRTTS-RRLHNMGFTPDGRLWMIVNGG------KIAFSDPDNSENWGELLSPLR  246 (327)
T ss_dssp             EEEETT---SSEEEEECTTCSSCEEEECCSS-SCEEEEEECTTSCEEEEETTT------EEEEEETTEEEEECCCBCTTS
T ss_pred             EEEECC---CcEEEEeCCCCCceeECCCCCC-CccceeEECCCCCEEEEeCCc------eEEEecCCCCCeeEeccCCcc
Confidence            766632   2344433 22578999864322 22222332 367888875321      2444432 35689987643 2


Q ss_pred             CCCCCCcEEEE--CCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEE-eCCEEEEEcCCceEEEEE
Q 045821          247 ASGWRGPAVVV--DDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVA-IGKTIFVIGKGCSAVVID  319 (352)
Q Consensus       247 ~~~~~~~~~~~--~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~i~v~gG~~~~~~~d  319 (352)
                      ........+..  ++.+|+.|+..  .+++-.-...+|+.+..... .....+.++. -++++++.|..-.++-++
T Consensus       247 ~~~~~~~~v~~~~~~~~~~~g~~g--~i~~S~DgG~tW~~~~~~~~-~~~~~~~v~~~~~~~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          247 RNSVGFLDLAYRTPNEVWLAGGAG--ALLCSQDGGQTWQQDVDVKK-VPSNFYKILFFSPDQGFILGQKGILLRYV  319 (327)
T ss_dssp             SCCSCEEEEEESSSSCEEEEESTT--CEEEESSTTSSCEECGGGTT-SSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred             cCCcceEEEEecCCCEEEEEeCCC--eEEEeCCCCcccEEcCccCC-CCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence            22211122322  57888887642  46555555789998863211 0122234433 467777777543343344

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.98  E-value=1.4  Score=43.42  Aligned_cols=182  Identities=9%  Similarity=0.022  Sum_probs=99.8

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCC----eeE-ecC-CCCCcceeeeeEE--ECCEEEEEeCCCCCCceEEEeCCCC
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMN----TWT-DAA-PMSTARCYFPCGV--LNQKIYCIGGLGDTHSWDVYDPRTN  190 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~----~W~-~~~-~~~~~r~~~~~~~--~~~~iyv~gG~~~~~~v~~yd~~t~  190 (352)
                      ++.||+...      ....++++++...    ... .+. .+..|   .++++  .+++||+.-...  ..|+++++...
T Consensus       435 ~~~lY~sD~------~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P---~GLAvD~~~~~LY~tD~~~--~~I~v~~ldG~  503 (791)
T 3m0c_C          435 SNRIYWSDL------SQRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAVDWIHSNIYWTDSVL--GTVSVADTKGV  503 (791)
T ss_dssp             TTEEEEEET------TTTEEEEEEC--------CEEEECSSCSCC---CEEEEETTTTEEEEEETTT--TEEEEEETTSS
T ss_pred             CCeeEEeec------cceeEEEEeccCCCCCcceeEEEecCCCCc---ceeeeeecCCcEEEEecCC--CeEEEEeCCCC
Confidence            678998853      2356777777642    222 222 22222   22333  367999986544  68899999876


Q ss_pred             cEEEecCCCCcccceeEEE--ECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEE---ECCEEEEEe
Q 045821          191 NWKLHTEPNIFTEIEDSFV--MDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVV---VDDALYVLD  265 (352)
Q Consensus       191 ~W~~~~~~~~~~~~~~~~~--~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~---~~~~l~~~g  265 (352)
                      .-+.+..... ..-..+++  .+|.||+.--.    ....|+++++....-..+...  ......+++   .+++||+..
T Consensus       504 ~~~~l~~~~l-~~P~gIaVDp~~g~LYwtD~g----~~~~I~~~~~dG~~~~~lv~~--~l~~P~GLavD~~~~~LYwaD  576 (791)
T 3m0c_C          504 KRKTLFRENG-SKPRAIVVDPVHGFMYWTDWG----TPAKIKKGGLNGVDIYSLVTE--NIQWPNGITLDLLSGRLYWVD  576 (791)
T ss_dssp             SEEEEEECTT-CCEEEEEEETTTTEEEEEECS----SSCEEEEEETTSCCEEEEECS--SCSCEEEEEEETTTTEEEEEE
T ss_pred             eEEEEEeCCC-CCcceEEEecCCCCEEEecCC----CCCeEEEEecCCCceEEEEeC--CCCCceEEEEecCCCeEEEEe
Confidence            5544431111 11123333  26899998411    113688888865443333211  001111232   368999997


Q ss_pred             cCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEcC-CceEEEEEc
Q 045821          266 QSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGK-GCSAVVIDV  320 (352)
Q Consensus       266 g~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG-~~~~~~~d~  320 (352)
                      ...+ .|+++|++...-..+..... ...+.+++++.++.||+.-. ...+..+|.
T Consensus       577 ~~~~-~I~~~d~dG~~~~~v~~~~~-~l~~P~glav~~~~lYwtD~~~~~I~~~dk  630 (791)
T 3m0c_C          577 SKLH-SISSIDVNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSANR  630 (791)
T ss_dssp             TTTT-EEEEEETTSCSCEEEEECTT-TTSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             CCCC-cEEEEecCCCceEEEecCCC-ccCCCCEEEEeCCEEEEEECCCCEEEEEeC
Confidence            6544 89999998755444432211 12344678888999998863 344555664

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=95.98  E-value=0.23  Score=42.51  Aligned_cols=139  Identities=12%  Similarity=0.054  Sum_probs=66.7

Q ss_pred             eEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECC-EEEEEeCCCCCCCCCCeEEEEECCCCeeEe-cCCCC-C--cc
Q 045821           84 CCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGK-NAYLLGGCGWSEDATSEVYCYDASMNTWTD-AAPMS-T--AR  158 (352)
Q Consensus        84 ~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~-~~~~~-~--~r  158 (352)
                      .+..+|+  .+......-..+.. ...........++ .+|+.+..      ...++++|+.+++-.. +.... .  ..
T Consensus        12 ~v~~~d~--~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~------~~~v~~~d~~~~~~~~~~~~~~~~~~~~   82 (337)
T 1pby_B           12 KLVVIDT--EKMAVDKVITIADA-GPTPMVPMVAPGGRIAYATVNK------SESLVKIDLVTGETLGRIDLSTPEERVK   82 (337)
T ss_dssp             EEEEEET--TTTEEEEEEECTTC-TTCCCCEEECTTSSEEEEEETT------TTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred             eEEEEEC--CCCcEEEEEEcCCC-CCCccceEEcCCCCEEEEEeCC------CCeEEEEECCCCCeEeeEEcCCcccccc
Confidence            4556688  76654333233210 0011122222244 67777642      3578999998876432 22111 0  00


Q ss_pred             eeeeeEEE-CC-EEEEEeCC-------C--CCCceEEEeCCCCcEEEecCCCCcccceeEEEECCE-EEEEccCCCCCCc
Q 045821          159 CYFPCGVL-NQ-KIYCIGGL-------G--DTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGK-IYIRCSASAATSH  226 (352)
Q Consensus       159 ~~~~~~~~-~~-~iyv~gG~-------~--~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~-iyv~GG~~~~~~~  226 (352)
                      ....++.. ++ .+|+....       .  ....+.+||..+.+....-...... ...+..-+++ ||+. +       
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~-~-------  153 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQI-TMLAWARDGSKLYGL-G-------  153 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSC-CCEEECTTSSCEEEE-S-------
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCc-ceeEECCCCCEEEEe-C-------
Confidence            11222332 34 67776411       0  1278899999887654322121111 1112222554 6665 2       


Q ss_pred             eEEEEEeCCCCcee
Q 045821          227 VCALVYEPSTDSWL  240 (352)
Q Consensus       227 ~~i~~yd~~~~~W~  240 (352)
                      ..+..+|..+.+-.
T Consensus       154 ~~i~~~d~~~~~~~  167 (337)
T 1pby_B          154 RDLHVMDPEAGTLV  167 (337)
T ss_dssp             SSEEEEETTTTEEE
T ss_pred             CeEEEEECCCCcEe
Confidence            14888898776543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=95.97  E-value=0.087  Score=47.06  Aligned_cols=145  Identities=14%  Similarity=0.129  Sum_probs=74.5

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecC
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTE  197 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~  197 (352)
                      ++..++.|+.+      ..+.+||..+++-...-.-... .-.+++.. ++..++.|+.+  ..+.+||..+.+....-.
T Consensus       134 dg~~l~s~~~d------~~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d--~~v~iwd~~~~~~~~~~~  204 (393)
T 1erj_A          134 DGKFLATGAED------RLIRIWDIENRKIVMILQGHEQ-DIYSLDYFPSGDKLVSGSGD--RTVRIWDLRTGQCSLTLS  204 (393)
T ss_dssp             TSSEEEEEETT------SCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETT--SEEEEEETTTTEEEEEEE
T ss_pred             CCCEEEEEcCC------CeEEEEECCCCcEEEEEccCCC-CEEEEEEcCCCCEEEEecCC--CcEEEEECCCCeeEEEEE
Confidence            45666666543      4588899988764332111111 11122222 45555666655  678899998876543321


Q ss_pred             CCCcccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCceee-cCCCCC-CCCC-Cc--EEE--ECCEEEEEecCC
Q 045821          198 PNIFTEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTDSWLH-ADANMA-SGWR-GP--AVV--VDDALYVLDQSS  268 (352)
Q Consensus       198 ~~~~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~-~~~~~~-~~~~-~~--~~~--~~~~l~~~gg~~  268 (352)
                      ..  .....++..  ++++++.|+.++     .+..||..+..-.. +..... ...+ ..  .+.  -+++.++.|+.+
T Consensus       205 ~~--~~v~~~~~~~~~~~~l~~~s~d~-----~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d  277 (393)
T 1erj_A          205 IE--DGVTTVAVSPGDGKYIAAGSLDR-----AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD  277 (393)
T ss_dssp             CS--SCEEEEEECSTTCCEEEEEETTS-----CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cC--CCcEEEEEECCCCCEEEEEcCCC-----cEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence            11  111122222  677777776553     47788887765432 211110 0111 11  122  266777777766


Q ss_pred             CCeEEEEeCCCC
Q 045821          269 GTKLMMWQKESR  280 (352)
Q Consensus       269 ~~~v~~yd~~~~  280 (352)
                      + .+.+||..+.
T Consensus       278 ~-~v~~wd~~~~  288 (393)
T 1erj_A          278 R-SVKLWNLQNA  288 (393)
T ss_dssp             S-EEEEEEC---
T ss_pred             C-EEEEEECCCC
Confidence            6 8999998753

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=95.88  E-value=0.75  Score=43.97  Aligned_cols=181  Identities=8%  Similarity=-0.041  Sum_probs=94.1

Q ss_pred             CCeEEEEECCC------CeeEecC-CCCCcceeeeeEE-ECCE-EEEEeCCCC-----CCceEEEeCC-CC---cEEEec
Q 045821          135 TSEVYCYDASM------NTWTDAA-PMSTARCYFPCGV-LNQK-IYCIGGLGD-----THSWDVYDPR-TN---NWKLHT  196 (352)
Q Consensus       135 ~~~~~~~d~~t------~~W~~~~-~~~~~r~~~~~~~-~~~~-iyv~gG~~~-----~~~v~~yd~~-t~---~W~~~~  196 (352)
                      ..+++++|..+      ++.+.+. .-.  ......+. -+|+ |++......     ...++++|.. ++   ..+.+.
T Consensus       160 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~  237 (662)
T 3azo_A          160 RRFLAAVPLDGSAAADRSAVRELSDDAH--RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL  237 (662)
T ss_dssp             EEEEEEEETTSTTTTCGGGSEESSCSCS--SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred             eeEEEEEECCCCccccCCceeEEEecCC--CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC
Confidence            36899999988      6666554 222  11122222 2554 444432221     1578999998 56   444443


Q ss_pred             CCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCC----CCCC---CcEEE-ECCEEEEEecCC
Q 045821          197 EPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMA----SGWR---GPAVV-VDDALYVLDQSS  268 (352)
Q Consensus       197 ~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~----~~~~---~~~~~-~~~~l~~~gg~~  268 (352)
                      .-........+..-+|++|+.+...   ....++.+|..+.++..+.....    ..+.   ..... -++++++.+...
T Consensus       238 ~~~~~~~~~~~~spdg~l~~~~~~~---~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~  314 (662)
T 3azo_A          238 GGPEEAIAQAEWAPDGSLIVATDRT---GWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKG  314 (662)
T ss_dssp             EETTBCEEEEEECTTSCEEEEECTT---SSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSS
T ss_pred             CCCCceEcceEECCCCeEEEEECCC---CCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcC
Confidence            1111111111222378877775432   23479999998888887744211    1111   11222 367777776652


Q ss_pred             CCeEEEEeCCCCceEEccCCCCCcCCCCceE-EEeCCEEEEEcC-Cc---eEEEEEcCCcc
Q 045821          269 GTKLMMWQKESREWSPVGRLSTLLTRPPCKL-VAIGKTIFVIGK-GC---SAVVIDVGNIG  324 (352)
Q Consensus       269 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~i~v~gG-~~---~~~~~d~~~~~  324 (352)
                      ...++.+|..++....+.....    ....+ ..-++.+++..+ ..   .++.+|++...
T Consensus       315 ~~~l~~~d~~~~~~~~l~~~~~----~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~  371 (662)
T 3azo_A          315 AAVLGILDPESGELVDAAGPWT----EWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR  371 (662)
T ss_dssp             SCEEEEEETTTTEEEECCSSCC----EEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             ccEEEEEECCCCcEEEecCCCC----eEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            2578888998888776643211    11223 344666665543 22   24456655443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=95.86  E-value=0.43  Score=40.99  Aligned_cols=145  Identities=10%  Similarity=0.086  Sum_probs=70.3

Q ss_pred             CCE-EEEEeCCCCCCCCCCeEEEEEC-CCCeeEecCC--CCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCc---
Q 045821          119 GKN-AYLLGGCGWSEDATSEVYCYDA-SMNTWTDAAP--MSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNN---  191 (352)
Q Consensus       119 ~~~-iyv~GG~~~~~~~~~~~~~~d~-~t~~W~~~~~--~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~---  191 (352)
                      ++. .++.|+.+      ..+.+||. .+++...+..  ...+-.  +++...+..++.++.+  ..+.+||..+..   
T Consensus        67 ~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~~v~--~l~~~~~~~l~s~~~d--~~i~iwd~~~~~~~~  136 (342)
T 1yfq_A           67 NTDLQIYVGTVQ------GEILKVDLIGSPSFQALTNNEANLGIC--RICKYGDDKLIAASWD--GLIEVIDPRNYGDGV  136 (342)
T ss_dssp             SSSEEEEEEETT------SCEEEECSSSSSSEEECBSCCCCSCEE--EEEEETTTEEEEEETT--SEEEEECHHHHTTBC
T ss_pred             CCCcEEEEEcCC------CeEEEEEeccCCceEeccccCCCCceE--EEEeCCCCEEEEEcCC--CeEEEEccccccccc
Confidence            556 56666543      46888999 8877655544  222211  2222224455555544  678888876400   


Q ss_pred             ----EEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCC-Cc--eeecCCCCCCCCCCcEEEE-CCEEEE
Q 045821          192 ----WKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPST-DS--WLHADANMASGWRGPAVVV-DDALYV  263 (352)
Q Consensus       192 ----W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~-~~--W~~~~~~~~~~~~~~~~~~-~~~l~~  263 (352)
                          .+.+...........+....+. ++.|+..+     .+..||..+ ..  ..................- ++++++
T Consensus       137 ~~~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~  210 (342)
T 1yfq_A          137 IAVKNLNSNNTKVKNKIFTMDTNSSR-LIVGMNNS-----QVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYA  210 (342)
T ss_dssp             EEEEESCSSSSSSCCCEEEEEECSSE-EEEEESTT-----EEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEE
T ss_pred             ccccCCeeeEEeeCCceEEEEecCCc-EEEEeCCC-----eEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEE
Confidence                1122222211111223333445 44444332     588888876 33  2222111111111111222 567777


Q ss_pred             EecCCCCeEEEEeCCCC
Q 045821          264 LDQSSGTKLMMWQKESR  280 (352)
Q Consensus       264 ~gg~~~~~v~~yd~~~~  280 (352)
                      .|+..+ .+.+||....
T Consensus       211 ~~~~dg-~i~i~~~~~~  226 (342)
T 1yfq_A          211 CSSIDG-RVAVEFFDDQ  226 (342)
T ss_dssp             EEETTS-EEEEEECCTT
T ss_pred             EEecCC-cEEEEEEcCC
Confidence            887766 7777766543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=95.86  E-value=0.95  Score=40.58  Aligned_cols=214  Identities=10%  Similarity=0.027  Sum_probs=113.8

Q ss_pred             eEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE--CCEEEEEeCCCCCCCCCCeEEEEECCCCe----eEecCCCCCc
Q 045821           84 CCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL--GKNAYLLGGCGWSEDATSEVYCYDASMNT----WTDAAPMSTA  157 (352)
Q Consensus        84 ~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t~~----W~~~~~~~~~  157 (352)
                      .+..+|.  ....+..+.+..     ..-.+++..  ++.||+..-      ....++++++....    ...+.... .
T Consensus        93 ~I~~i~l--~~~~~~~~~~~~-----~~~~~l~~d~~~~~lywsD~------~~~~I~~~~~~g~~~~~~~~~~~~~~-~  158 (400)
T 3p5b_L           93 EVRKMTL--DRSEYTSLIPNL-----RNVVALDTEVASNRIYWSDL------SQRMICSTQLDRAHGVSSYDTVISRD-I  158 (400)
T ss_dssp             EEEEECT--TSCSCEEEECSC-----SCEEEEEEETTTTEEEEEET------TTTEEEEEEC------CCCEEEECSS-C
T ss_pred             eeEEEcc--CCcceeEecccc-----CcceEEeeeeccCceEEEec------CCCeEEEEEcccCCCCCcceEEEeCC-C
Confidence            5566677  666666554322     222334443  688998853      23568888886521    22221111 1


Q ss_pred             ceeeeeEE--ECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEE--ECCEEEEEccCCCCCCceEEEEEe
Q 045821          158 RCYFPCGV--LNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFV--MDGKIYIRCSASAATSHVCALVYE  233 (352)
Q Consensus       158 r~~~~~~~--~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~--~~g~iyv~GG~~~~~~~~~i~~yd  233 (352)
                      ....++++  .++.||+.-...  ..++++|+....-+.+.... ...-...++  .++.||+.--.    ....|++++
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~--~~I~~~~~~g~~~~~l~~~~-~~~P~~iavdp~~g~ly~td~~----~~~~I~~~~  231 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVL--GTVSVADTKGVKRKTLFREN-GSKPRAIVVDPVHGFMYWTDWG----TPAKIKKGG  231 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTT--TEEEEECTTTCSEEEEEECS-SCCEEEEEEETTTTEEEEEECS----SSCCEEEEE
T ss_pred             CCcccEEEEecCCceEEEECCC--CeEEEEeCCCCceEEEEeCC-CCCcceEEEecccCeEEEEeCC----CCCEEEEEe
Confidence            11223333  378999986544  67889999876654443111 111123333  36899987411    113588888


Q ss_pred             CCCCceeec-CCCCCCCCCCcEEE-ECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEc-
Q 045821          234 PSTDSWLHA-DANMASGWRGPAVV-VDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIG-  310 (352)
Q Consensus       234 ~~~~~W~~~-~~~~~~~~~~~~~~-~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~g-  310 (352)
                      +....=+.+ ......+ .+.++. .++.||+.....+ .|+++|++...-..+...+. ...+.+++++.++.||+.- 
T Consensus       232 ~dG~~~~~~~~~~l~~P-~glavd~~~~~lY~aD~~~~-~I~~~d~dG~~~~~~~~~~~-~l~~P~gl~v~~~~lywtd~  308 (400)
T 3p5b_L          232 LNGVDIYSLVTENIQWP-NGITLDLLSGRLYWVDSKLH-SISSIDVNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDI  308 (400)
T ss_dssp             TTSCSCEEEECSSCSCE-EEEEEETTTTEEEEEETTTT-EEEEEETTSCCCEEEEECSS-TTSSEEEEEEETTEEEEEES
T ss_pred             CCCCccEEEEECCCCce-EEEEEEeCCCEEEEEECCCC-EEEEEeCCCCccEEEEeCCC-CCCCCEEEEEeCCEEEEecC
Confidence            764332222 2111100 111222 3688999876544 89999998755444433221 1234467788899999875 


Q ss_pred             CCceEEEEEcC
Q 045821          311 KGCSAVVIDVG  321 (352)
Q Consensus       311 G~~~~~~~d~~  321 (352)
                      +...+..+|..
T Consensus       309 ~~~~V~~~~~~  319 (400)
T 3p5b_L          309 INEAIFSANRL  319 (400)
T ss_dssp             SSCSEEEEESS
T ss_pred             CCCeEEEEEcC
Confidence            34456667743

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=95.84  E-value=0.087  Score=45.47  Aligned_cols=189  Identities=10%  Similarity=0.069  Sum_probs=89.8

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcc-eeeeeEEE---CCEEEEEeCCCCCCceEEEeCCCCcEEE
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTAR-CYFPCGVL---NQKIYCIGGLGDTHSWDVYDPRTNNWKL  194 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r-~~~~~~~~---~~~iyv~gG~~~~~~v~~yd~~t~~W~~  194 (352)
                      ++..++.|+.      ...+.+||..+++...+..+..-. .-.+++..   ++.+++.|+.+  ..+.+||..+..|..
T Consensus        24 ~g~~lasgs~------D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D--~~v~iWd~~~~~~~~   95 (316)
T 3bg1_A           24 YGTRLATCSS------DRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD--RKVIIWREENGTWEK   95 (316)
T ss_dssp             GGCEEEEEET------TTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT--SCEEEECCSSSCCCE
T ss_pred             CCCEEEEEeC------CCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC--CEEEEEECCCCcceE
Confidence            4455555553      345777888766543322221100 11122221   25666667665  678999999887755


Q ss_pred             ecCCCCcccceeEEEE--C--CEEEEEccCCCCCCceEEEEEeCCCC-ceeecCCCCCCCCCCcEEEE------------
Q 045821          195 HTEPNIFTEIEDSFVM--D--GKIYIRCSASAATSHVCALVYEPSTD-SWLHADANMASGWRGPAVVV------------  257 (352)
Q Consensus       195 ~~~~~~~~~~~~~~~~--~--g~iyv~GG~~~~~~~~~i~~yd~~~~-~W~~~~~~~~~~~~~~~~~~------------  257 (352)
                      +..+........++.+  +  +.+++.|+.++     .+..+|..+. .|........+......+..            
T Consensus        96 ~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~-----~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  170 (316)
T 3bg1_A           96 SHEHAGHDSSVNSVCWAPHDYGLILACGSSDG-----AISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDH  170 (316)
T ss_dssp             EEEECCCSSCCCEEEECCTTTCSCEEEECSSS-----CEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------
T ss_pred             EEEccCCCCceEEEEECCCCCCcEEEEEcCCC-----CEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccccc
Confidence            4322211111122222  3  56666665442     3566666544 46432211111000001111            


Q ss_pred             -------CCEEEEEecCCCCeEEEEeCCC-CceEEccCCCCCcCCCCceEEE-eC----CEEEEEcCCce-EEEEEcCC
Q 045821          258 -------DDALYVLDQSSGTKLMMWQKES-REWSPVGRLSTLLTRPPCKLVA-IG----KTIFVIGKGCS-AVVIDVGN  322 (352)
Q Consensus       258 -------~~~l~~~gg~~~~~v~~yd~~~-~~W~~~~~~~~~~~~~~~~~~~-~~----~~i~v~gG~~~-~~~~d~~~  322 (352)
                             .+++++.|+.++ .+.+||..+ +.|..+..+... ...-.++.. .+    +.+++.|+.+. +.++|++.
T Consensus       171 ~~~~~~~~~~~l~sgs~D~-~v~lWd~~~~~~~~~~~~l~~h-~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          171 PSGQKPNYIKRFASGGCDN-LIKLWKEEEDGQWKEEQKLEAH-SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             CCSCCCCCCCBEECCBTTS-BCCEEEECTTSCEEEEECCBCC-SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             ccccCccccceEEEecCCC-eEEEEEeCCCCccceeeecccC-CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence                   134566676665 788888864 457666544321 111111211 12    25555565554 55788765

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=95.83  E-value=0.3  Score=42.02  Aligned_cols=190  Identities=11%  Similarity=0.151  Sum_probs=88.8

Q ss_pred             CEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE--C--CEEEEEeCCCCCCceEEEeCCCC-cEEE
Q 045821          120 KNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL--N--QKIYCIGGLGDTHSWDVYDPRTN-NWKL  194 (352)
Q Consensus       120 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~--~--~~iyv~gG~~~~~~v~~yd~~t~-~W~~  194 (352)
                      +.+++.|+.+      ..+.+||..+++|..+..+......-..+.+  +  +.+++.|+.+  ..+.+||..+. .|..
T Consensus        71 ~~~l~s~s~D------~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D--~~i~lwd~~~~~~~~~  142 (316)
T 3bg1_A           71 GNILASCSYD------RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD--GAISLLTYTGEGQWEV  142 (316)
T ss_dssp             SSCEEEEETT------SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSS--SCEEEEEECSSSCEEE
T ss_pred             CCEEEEEECC------CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCC--CCEEEEecCCCCCcce
Confidence            4566666543      4578889887766443322111111112222  2  5566777665  67788888765 5754


Q ss_pred             ecCCCCcccceeEEEE-------------------CCEEEEEccCCCCCCceEEEEEeCC-CCceeecCCCCCCCCCCcE
Q 045821          195 HTEPNIFTEIEDSFVM-------------------DGKIYIRCSASAATSHVCALVYEPS-TDSWLHADANMASGWRGPA  254 (352)
Q Consensus       195 ~~~~~~~~~~~~~~~~-------------------~g~iyv~GG~~~~~~~~~i~~yd~~-~~~W~~~~~~~~~~~~~~~  254 (352)
                      ............++..                   ++++++.|+.++     .+..+|.. ...|..+.....+...-..
T Consensus       143 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~-----~v~lWd~~~~~~~~~~~~l~~h~~~V~~  217 (316)
T 3bg1_A          143 KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDN-----LIKLWKEEEDGQWKEEQKLEAHSDWVRD  217 (316)
T ss_dssp             CCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTS-----BCCEEEECTTSCEEEEECCBCCSSCEEE
T ss_pred             eeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCC-----eEEEEEeCCCCccceeeecccCCCceEE
Confidence            3221111111101111                   134556554442     34455554 3456554332211111112


Q ss_pred             EEE--C----CEEEEEecCCCCeEEEEeCCC---CceEE--ccCCCCCcCCCCceEE-EeCCEEEEEcCCc-eEEEEEcC
Q 045821          255 VVV--D----DALYVLDQSSGTKLMMWQKES---REWSP--VGRLSTLLTRPPCKLV-AIGKTIFVIGKGC-SAVVIDVG  321 (352)
Q Consensus       255 ~~~--~----~~l~~~gg~~~~~v~~yd~~~---~~W~~--~~~~~~~~~~~~~~~~-~~~~~i~v~gG~~-~~~~~d~~  321 (352)
                      +.+  +    +.+++.|+.++ .+.+||..+   +.|..  +....    ....++. ..++.+++.|+.+ .+.+++..
T Consensus       218 v~~sp~~~~~~~~las~s~D~-~v~iw~~~~~~~~~~~~~~~~~~~----~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          218 VAWAPSIGLPTSTIASCSQDG-RVFIWTCDDASSNTWSPKLLHKFN----DVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EECCCCSSCSCCEEEEEETTC-EEEEEECSSTTCCCCBCCEEEECS----SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             EEecCCCCCCCceEEEEcCCC-eEEEEEccCccccchhhhhhhcCC----CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            222  2    25677777666 899998875   33321  11111    1111222 2355666666555 45578875


Q ss_pred             -Cccccc
Q 045821          322 -NIGNIG  327 (352)
Q Consensus       322 -~~~w~~  327 (352)
                       ...|..
T Consensus       293 ~~g~~~~  299 (316)
T 3bg1_A          293 VDGQWVC  299 (316)
T ss_dssp             TTSCEEE
T ss_pred             CCCcEEE
Confidence             334543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=95.82  E-value=0.43  Score=45.67  Aligned_cols=192  Identities=8%  Similarity=-0.079  Sum_probs=103.0

Q ss_pred             ceeEEEecCCCCC------CCeeEec-cCCCcccCCcceEEEEECCE-EEEEeCCCCC-CCCCCeEEEEECC-CC---ee
Q 045821           82 RVCCYVLDPNSTR------RSWKMIH-ELPARTLRRKGMGFEVLGKN-AYLLGGCGWS-EDATSEVYCYDAS-MN---TW  148 (352)
Q Consensus        82 ~~~~~~~d~~~~~------~~w~~~~-~~~~~~~~~~~~~~~~~~~~-iyv~GG~~~~-~~~~~~~~~~d~~-t~---~W  148 (352)
                      ...++.+|.  .+      +....+. ...    .........-+++ |+........ .-...+++++|.. ++   +.
T Consensus       160 ~~~i~~~~~--~~~~~~~~~~~~~l~~~~~----~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~  233 (662)
T 3azo_A          160 RRFLAAVPL--DGSAAADRSAVRELSDDAH----RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADT  233 (662)
T ss_dssp             EEEEEEEET--TSTTTTCGGGSEESSCSCS----SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEE
T ss_pred             eeEEEEEEC--CCCccccCCceeEEEecCC----CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccccc
Confidence            356788888  66      5555554 222    1111112223454 4443322111 0123689999998 56   44


Q ss_pred             EecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCccc-------ceeEEEE-CCEEEEEcc
Q 045821          149 TDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTE-------IEDSFVM-DGKIYIRCS  219 (352)
Q Consensus       149 ~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~-------~~~~~~~-~g~iyv~GG  219 (352)
                      ..+..-.. ......+.. ++++|+.+..+....++.+|..+.+++.+........       ....+.. ++++++.+.
T Consensus       234 ~~l~~~~~-~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~  312 (662)
T 3azo_A          234 RTLLGGPE-EAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG  312 (662)
T ss_dssp             EEEEEETT-BCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB
T ss_pred             EEeCCCCC-ceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEE
Confidence            44432111 111222222 6777777665433579999998888988754221110       1123333 677777643


Q ss_pred             CCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcE-EEECCEEEEEecCCC--CeEEEEeCCCCceEEcc
Q 045821          220 ASAATSHVCALVYEPSTDSWLHADANMASGWRGPA-VVVDDALYVLDQSSG--TKLMMWQKESREWSPVG  286 (352)
Q Consensus       220 ~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~~--~~v~~yd~~~~~W~~~~  286 (352)
                      .    ....++.+|..+++.+.+....  ...... ...++.+++..+...  ..++.+|..+++...+.
T Consensus       313 ~----~~~~l~~~d~~~~~~~~l~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~  376 (662)
T 3azo_A          313 K----GAAVLGILDPESGELVDAAGPW--TEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIG  376 (662)
T ss_dssp             S----SSCEEEEEETTTTEEEECCSSC--CEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred             c----CccEEEEEECCCCcEEEecCCC--CeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEee
Confidence            2    3347888898888777764321  111112 234666666654332  46888999988887774

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=95.79  E-value=0.16  Score=43.88  Aligned_cols=147  Identities=9%  Similarity=0.070  Sum_probs=79.8

Q ss_pred             CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEE-ECCEEEEEccCCCCCCceEEEEEeCCCCceeec-CC
Q 045821          167 NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFV-MDGKIYIRCSASAATSHVCALVYEPSTDSWLHA-DA  244 (352)
Q Consensus       167 ~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~-~~  244 (352)
                      ++++|+.+...  ..+.+||+.+++.+.+..... ..-...+. -+|++|+..... ......+++||+.+.....+ ..
T Consensus        55 ~g~l~~~~~~~--~~i~~~d~~~~~~~~~~~~~~-~~~~~i~~~~dg~l~v~~~~~-~~~~~~i~~~d~~~~~~~~~~~~  130 (333)
T 2dg1_A           55 QGQLFLLDVFE--GNIFKINPETKEIKRPFVSHK-ANPAAIKIHKDGRLFVCYLGD-FKSTGGIFAATENGDNLQDIIED  130 (333)
T ss_dssp             TSCEEEEETTT--CEEEEECTTTCCEEEEEECSS-SSEEEEEECTTSCEEEEECTT-SSSCCEEEEECTTSCSCEEEECS
T ss_pred             CCCEEEEECCC--CEEEEEeCCCCcEEEEeeCCC-CCcceEEECCCCcEEEEeCCC-CCCCceEEEEeCCCCEEEEEEcc
Confidence            57788877543  678999999988876542111 11112222 367888874322 11223689999988776532 21


Q ss_pred             CCCCCCCCcEE--EECCEEEEEecCC-----CCeEEEEeCCCCceEEccCCCCCcCCCCceEEE-eCC-EEEEEcC-Cce
Q 045821          245 NMASGWRGPAV--VVDDALYVLDQSS-----GTKLMMWQKESREWSPVGRLSTLLTRPPCKLVA-IGK-TIFVIGK-GCS  314 (352)
Q Consensus       245 ~~~~~~~~~~~--~~~~~l~~~gg~~-----~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~~-~i~v~gG-~~~  314 (352)
                      .. .......+  .-++.+|+.....     ...+++||+++++...+....    ....+++. .++ .||+... ...
T Consensus       131 ~~-~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~i~~~~dg~~l~v~~~~~~~  205 (333)
T 2dg1_A          131 LS-TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI----SVANGIALSTDEKVLWVTETTANR  205 (333)
T ss_dssp             SS-SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE----SSEEEEEECTTSSEEEEEEGGGTE
T ss_pred             Cc-cCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCC----CcccceEECCCCCEEEEEeCCCCe
Confidence            11 11111122  2367788765421     237999999887766553110    11112222 233 5777653 345


Q ss_pred             EEEEEcCC
Q 045821          315 AVVIDVGN  322 (352)
Q Consensus       315 ~~~~d~~~  322 (352)
                      +.+||+..
T Consensus       206 i~~~d~~~  213 (333)
T 2dg1_A          206 LHRIALED  213 (333)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEecC
Confidence            67788754

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=95.79  E-value=0.29  Score=42.31  Aligned_cols=187  Identities=10%  Similarity=0.041  Sum_probs=91.8

Q ss_pred             EEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE-C---CEEEEEeCCCCCCceEEEeCCCCc--EEE
Q 045821          121 NAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-N---QKIYCIGGLGDTHSWDVYDPRTNN--WKL  194 (352)
Q Consensus       121 ~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~---~~iyv~gG~~~~~~v~~yd~~t~~--W~~  194 (352)
                      .+++.|+...   ....+.+||..+++............-.+++.. +   +.+++.|+.+  ..+.+||..+..  -..
T Consensus        32 ~l~~~~s~~~---~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~  106 (357)
T 3i2n_A           32 KFVTMGNFAR---GTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG--GNLHIWNLEAPEMPVYS  106 (357)
T ss_dssp             EEEEEEC--C---CCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT--SCEEEECTTSCSSCSEE
T ss_pred             eEEEecCccC---CCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC--CeEEEEeCCCCCccEEE
Confidence            5555554311   135788889888765433222111111111111 2   4666667655  678899988764  222


Q ss_pred             ecCCCCcccceeEE-------EECCEEEEEccCCCCCCceEEEEEeCCCCc--eeecCCCCCCCC-CCcEEE------EC
Q 045821          195 HTEPNIFTEIEDSF-------VMDGKIYIRCSASAATSHVCALVYEPSTDS--WLHADANMASGW-RGPAVV------VD  258 (352)
Q Consensus       195 ~~~~~~~~~~~~~~-------~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~--W~~~~~~~~~~~-~~~~~~------~~  258 (352)
                      +.....  .-....       .-++.+++.|+.++     .+..||..+..  ...+........ ....+.      .+
T Consensus       107 ~~~~~~--~v~~~~~~~~~~~s~~~~~l~~~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  179 (357)
T 3i2n_A          107 VKGHKE--IINAIDGIGGLGIGEGAPEIVTGSRDG-----TVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQE  179 (357)
T ss_dssp             ECCCSS--CEEEEEEESGGGCC-CCCEEEEEETTS-----CEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-C
T ss_pred             EEeccc--ceEEEeeccccccCCCccEEEEEeCCC-----eEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCC
Confidence            221111  111111       13566666665543     47888887654  333322111111 111122      46


Q ss_pred             CEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEe----CCEEEEEcCCc-eEEEEEcCCcc
Q 045821          259 DALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAI----GKTIFVIGKGC-SAVVIDVGNIG  324 (352)
Q Consensus       259 ~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~----~~~i~v~gG~~-~~~~~d~~~~~  324 (352)
                      +.+++.|+.++ .+.+||..+.+-........    ...++...    ++..++.|+.+ .+.+||+....
T Consensus       180 ~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  245 (357)
T 3i2n_A          180 ERVVCAGYDNG-DIKLFDLRNMALRWETNIKN----GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH  245 (357)
T ss_dssp             CCEEEEEETTS-EEEEEETTTTEEEEEEECSS----CEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred             CCEEEEEccCC-eEEEEECccCceeeecCCCC----ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence            77777777666 89999999877543322221    11222222    44555555444 45678876644

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=95.75  E-value=0.0025  Score=55.95  Aligned_cols=43  Identities=21%  Similarity=0.164  Sum_probs=36.7

Q ss_pred             CCCCccCCCcHHHHHHhhccCccccchhhhhhhhhhcccccCh
Q 045821           13 SVVPLISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSE   55 (352)
Q Consensus        13 ~~~~~~~~lp~dl~~~il~r~p~~~~~~l~~v~k~W~~l~~s~   55 (352)
                      .+...|..||+|++.+|+++++..+..+++.|||+|+.+..++
T Consensus         4 ~~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~   46 (336)
T 2ast_B            4 FPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE   46 (336)
T ss_dssp             ---CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCS
T ss_pred             cccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCc
Confidence            3456789999999999999999999999999999999886544

>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1

Probab=95.74  E-value=0.62  Score=37.58  Aligned_cols=147  Identities=7%  Similarity=-0.020  Sum_probs=82.3

Q ss_pred             EEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeE--ec----CCCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEE
Q 045821          114 GFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWT--DA----APMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVY  185 (352)
Q Consensus       114 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~--~~----~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~y  185 (352)
                      +++...+++|+|-|        ..+|+++.....+.  .+    +.+|.  .--++...  ++++|++-|    +.+++|
T Consensus        28 Ai~~~~g~~y~Fkg--------~~~wr~~~~~~~~~p~~I~~~wp~Lp~--~iDAa~~~~~~~~iyfFkG----~~~w~~   93 (207)
T 1pex_A           28 AITSLRGETMIFKD--------RFFWRLHPQQVDAELFLTKSFWPELPN--RIDAAYEHPSHDLIFIFRG----RKFWAL   93 (207)
T ss_dssp             EEEEETTEEEEEET--------TEEEEECSSSSCCEEEEHHHHCTTSCS--SCCEEEEETTTTEEEEEET----TEEEEE
T ss_pred             EEEeCCCcEEEEEC--------CEEEEEeCCCcCCCceehhHhccCCCC--CccEEEEeccCCcEEEEcc----CEEEEE
Confidence            35567999999976        45677665433221  11    12232  11222222  589999999    778999


Q ss_pred             eCCCCcE---EEecCC--CCcc-cceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCceeec-CCC-----CC-CCC
Q 045821          186 DPRTNNW---KLHTEP--NIFT-EIEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTDSWLHA-DAN-----MA-SGW  250 (352)
Q Consensus       186 d~~t~~W---~~~~~~--~~~~-~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~-~~~-----~~-~~~  250 (352)
                      +..+-.-   +.|..+  |... ...+++..  +|++|++-|.       ..|+||..+++-..- +..     +. +..
T Consensus        94 ~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG~-------~ywr~d~~~~~~d~gyPr~i~~~~~Gip~~  166 (207)
T 1pex_A           94 NGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGN-------QVWRYDDTNHIMDKDYPRLIEEDFPGIGDK  166 (207)
T ss_dssp             STTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETT-------EEEEEETTTTEECSSCCCBHHHHSTTSCSC
T ss_pred             eCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeCC-------EEEEEeCcCccccCCCCccHHHcCCCCCCC
Confidence            7543211   233322  2111 12233333  4899999654       389999876532210 000     00 111


Q ss_pred             CCcEEEECCEEEEEecCCCCeEEEEeCCCCceEE
Q 045821          251 RGPAVVVDDALYVLDQSSGTKLMMWQKESREWSP  284 (352)
Q Consensus       251 ~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~  284 (352)
                      .-+++..++++|++-|.   ..++||..+++-..
T Consensus       167 iDaAf~~~g~~YfFkg~---~y~rf~~~~~~v~~  197 (207)
T 1pex_A          167 VDAVYEKNGYIYFFNGP---IQFEYSIWSNRIVR  197 (207)
T ss_dssp             CSEEEEETTEEEEEETT---EEEEEETTTTEEEE
T ss_pred             ccEEEEcCCcEEEEECC---EEEEEeCCccEEec
Confidence            22345568999999876   89999998776544

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=95.73  E-value=0.27  Score=44.45  Aligned_cols=146  Identities=8%  Similarity=0.003  Sum_probs=73.9

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCccee-eeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEec
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCY-FPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHT  196 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~-~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~  196 (352)
                      ++.+++.|+.+      ..+.+||..++....+......... .+++.. ++.+++.|+.+  ..+.+||..+..   +.
T Consensus       176 ~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d--g~i~~wd~~~~~---~~  244 (435)
T 4e54_B          176 NTNQFYASSME------GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNV--GNVILLNMDGKE---LW  244 (435)
T ss_dssp             CTTEEEEECSS------SCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSS--SBEEEEESSSCB---CC
T ss_pred             CCCEEEEEeCC------CEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCC--CcEeeeccCcce---eE
Confidence            45566666543      3578889988766554432222121 222222 56777777765  678899987643   22


Q ss_pred             CCCCcccceeEEEE--C-CEEEEEccCCCCCCceEEEEEeCCCCceeec-CCCCCCCCCCcEE--EECCEEEEEecCCCC
Q 045821          197 EPNIFTEIEDSFVM--D-GKIYIRCSASAATSHVCALVYEPSTDSWLHA-DANMASGWRGPAV--VVDDALYVLDQSSGT  270 (352)
Q Consensus       197 ~~~~~~~~~~~~~~--~-g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~-~~~~~~~~~~~~~--~~~~~l~~~gg~~~~  270 (352)
                      .+........++.+  + ..+++.|+.++     .+..||..+.+-... .....+...-..+  .-++..++.|+.++ 
T Consensus       245 ~~~~h~~~v~~v~~~p~~~~~~~s~s~d~-----~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~-  318 (435)
T 4e54_B          245 NLRMHKKKVTHVALNPCCDWFLATASVDQ-----TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS-  318 (435)
T ss_dssp             CSBCCSSCEEEEEECTTCSSEEEEEETTS-----BCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS-
T ss_pred             EEecccceEEeeeecCCCceEEEEecCcc-----eeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCC-
Confidence            12111111122222  3 34666655542     366777765432211 0001111000011  22666777777666 


Q ss_pred             eEEEEeCCCCc
Q 045821          271 KLMMWQKESRE  281 (352)
Q Consensus       271 ~v~~yd~~~~~  281 (352)
                      .|.+||..+..
T Consensus       319 ~i~iwd~~~~~  329 (435)
T 4e54_B          319 EIRVYSASQWD  329 (435)
T ss_dssp             CEEEEESSSSS
T ss_pred             EEEEEECCCCc
Confidence            89999987643

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.73  E-value=0.44  Score=46.30  Aligned_cols=184  Identities=9%  Similarity=0.020  Sum_probs=97.1

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCC----CeeEecC--CCCCcceeeeeEE--ECCEEEEEeCCCCCCceEEEeCCCC
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASM----NTWTDAA--PMSTARCYFPCGV--LNQKIYCIGGLGDTHSWDVYDPRTN  190 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t----~~W~~~~--~~~~~r~~~~~~~--~~~~iyv~gG~~~~~~v~~yd~~t~  190 (352)
                      ++.||+.--      ....++++++.+    ..-..+-  .+..|   .++++  .++.||+.-...  ..+.++++...
T Consensus       417 ~~~Ly~sD~------~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P---~glavD~~~g~LY~tD~~~--~~I~v~d~dg~  485 (699)
T 1n7d_A          417 SNRIYWSDL------SQRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAVDWIHSNIYWTDSVL--GTVSVADTKGV  485 (699)
T ss_dssp             TTEEEECCT------TTTSBEEEESCCCCC-CCCCCBCCSCC--C---CCEECCCSSSBCEECCTTT--SCEEEEBSSSC
T ss_pred             cCeEEEEec------CCCeEEEEecCCCCCCcceEEEEeCCCCCc---ceEEEEeeCCcEEEEeccC--CeEEEEecCCC
Confidence            678888742      235688888875    1111111  11111   22333  367899864322  67899998876


Q ss_pred             cEEEecCCCCcccceeEEE--ECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEE---CCEEEEEe
Q 045821          191 NWKLHTEPNIFTEIEDSFV--MDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVV---DDALYVLD  265 (352)
Q Consensus       191 ~W~~~~~~~~~~~~~~~~~--~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~l~~~g  265 (352)
                      .-+.+..... ..-..+++  .++.||+..-.    ....|+++++....-+.+... ... ....+.+   ++.||+..
T Consensus       486 ~~~~l~~~~~-~~P~giavDp~~g~ly~td~~----~~~~I~~~~~dG~~~~~l~~~-~l~-~PnGlavd~~~~~LY~aD  558 (699)
T 1n7d_A          486 KRKTLFREQG-SKPRAIVVDPVHGFMYWTDWG----TPAKIKKGGLNGVDIYSLVTE-NIQ-WPNGITLDLLSGRLYWVD  558 (699)
T ss_dssp             CEEEECCCSS-CCCCCEECCSSSSCCEECCCS----SSCCEEBCCSSSCCCCEESCS-SCS-SCCCEEECTTTCCEEEEE
T ss_pred             ceEEEEeCCC-CCcceEEEccCCCcEEEcccC----CCCeEEEEeCCCCCeeEEEeC-CCC-CccEEEEeccCCEEEEEe
Confidence            5444422111 11122333  26788886311    113577777654333222111 111 1112332   57899887


Q ss_pred             cCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEc-CCceEEEEEcCC
Q 045821          266 QSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIG-KGCSAVVIDVGN  322 (352)
Q Consensus       266 g~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~g-G~~~~~~~d~~~  322 (352)
                      ...+ .|+++|+....-..+..... ......++++.++.||+.- +...+..+|..+
T Consensus       559 ~~~~-~I~~~d~dG~~~~~~~~~~~-~~~~P~glavd~~~lywtd~~~~~V~~~d~~~  614 (699)
T 1n7d_A          559 SKLH-SISSIDVNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSANRLT  614 (699)
T ss_dssp             TTTT-EEEEECSSSSCCEEECCCSS-SCSSCCCCEEETTEEEEECSTTTCEEEEETTT
T ss_pred             cCCC-eEEEEccCCCceEEEEecCC-cCCCceEeEEECCEEEEEeCCCCeEEEEEccC
Confidence            6544 89999998654444433221 1234456777888999875 344566788653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=95.73  E-value=1.4  Score=41.58  Aligned_cols=202  Identities=12%  Similarity=0.104  Sum_probs=108.4

Q ss_pred             CCEEEEEEecCCCCceeEEEecC-CCCCCCeeEeccCCCcc-----cCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEE
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDP-NSTRRSWKMIHELPART-----LRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCY  141 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~-~~~~~~w~~~~~~~~~~-----~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~  141 (352)
                      ++.||+....    .-.++.+|. ..-...|+.-.......     +.....+.+..++.||+...       ...++.+
T Consensus        62 ~g~vyv~~~~----~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg~l~al  130 (571)
T 2ad6_A           62 GDMMYVHSAF----PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------NGHLLAL  130 (571)
T ss_dssp             TTEEEEECST----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TSEEEEE
T ss_pred             CCEEEEEeCC----CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-------CCEEEEE
Confidence            8888877431    124666776 44566787644332100     00112234567889988742       3578999


Q ss_pred             ECCCCe--eEec-CCCCCc-ceeeeeEEECCEEEEEeCCCC---CCceEEEeCCCCc--EEEecCCCCcc----------
Q 045821          142 DASMNT--WTDA-APMSTA-RCYFPCGVLNQKIYCIGGLGD---THSWDVYDPRTNN--WKLHTEPNIFT----------  202 (352)
Q Consensus       142 d~~t~~--W~~~-~~~~~~-r~~~~~~~~~~~iyv~gG~~~---~~~v~~yd~~t~~--W~~~~~~~~~~----------  202 (352)
                      |..+++  |+.- ...+.. ....+.++.++.+|+..+...   ...+..||..|.+  |+.-...+...          
T Consensus       131 D~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~  210 (571)
T 2ad6_A          131 DAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSA  210 (571)
T ss_dssp             ETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred             ECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccc
Confidence            998885  8643 221111 122344566899988654211   2678999998774  87543221100          


Q ss_pred             ---------------------cce---eEEEE---CCEEEEEccCCC----------CCCceEEEEEeCCCC--ceeecC
Q 045821          203 ---------------------EIE---DSFVM---DGKIYIRCSASA----------ATSHVCALVYEPSTD--SWLHAD  243 (352)
Q Consensus       203 ---------------------~~~---~~~~~---~g~iyv~GG~~~----------~~~~~~i~~yd~~~~--~W~~~~  243 (352)
                                           ...   ....+   .+.+|+-.|...          ......+.++|+.++  .|+.-.
T Consensus       211 ~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~  290 (571)
T 2ad6_A          211 NPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQK  290 (571)
T ss_dssp             CGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEES
T ss_pred             cccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecC
Confidence                                 000   11222   468888644211          111236899999776  487542


Q ss_pred             CCCC---C-CCCCcEEE---ECC---EEEEEecCCCCeEEEEeCCCCc
Q 045821          244 ANMA---S-GWRGPAVV---VDD---ALYVLDQSSGTKLMMWQKESRE  281 (352)
Q Consensus       244 ~~~~---~-~~~~~~~~---~~~---~l~~~gg~~~~~v~~yd~~~~~  281 (352)
                      .+..   . ......+.   .+|   ++++++..++ .++.+|.++++
T Consensus       291 ~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G-~l~~lD~~tG~  337 (571)
T 2ad6_A          291 TPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNG-ILYTLNRENGN  337 (571)
T ss_dssp             STTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTS-EEEEEETTTCC
T ss_pred             CCCcccccccCCCCEEEecccCCcEEEEEEEeCCCc-EEEEEECCCCC
Confidence            2111   0 11222222   256   3666666555 78888887765

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=95.72  E-value=0.84  Score=38.99  Aligned_cols=172  Identities=17%  Similarity=0.219  Sum_probs=88.7

Q ss_pred             ECCEEEEEeCCCCCCCCCCeEEEEECC-CCeeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCC-cEEE
Q 045821          118 LGKNAYLLGGCGWSEDATSEVYCYDAS-MNTWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTN-NWKL  194 (352)
Q Consensus       118 ~~~~iyv~GG~~~~~~~~~~~~~~d~~-t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~-~W~~  194 (352)
                      .++.||+...       ...++.||+. ...|......+   ...+.+.. ++.+|+... +  ..+..||+... .|+.
T Consensus       106 ~~~~l~v~t~-------~~~l~~~d~~g~~~~~~~~~~~---~~~~~~~~~~g~l~vgt~-~--~~l~~~d~~g~~~~~~  172 (330)
T 3hxj_A          106 FEDILYVTSM-------DGHLYAINTDGTEKWRFKTKKA---IYATPIVSEDGTIYVGSN-D--NYLYAINPDGTEKWRF  172 (330)
T ss_dssp             ETTEEEEECT-------TSEEEEECTTSCEEEEEECSSC---CCSCCEECTTSCEEEECT-T--SEEEEECTTSCEEEEE
T ss_pred             ECCEEEEEec-------CCEEEEEcCCCCEEEEEcCCCc---eeeeeEEcCCCEEEEEcC-C--CEEEEECCCCCEeEEE
Confidence            3888887532       2468889987 22465443211   12223334 677777432 2  56899999822 3654


Q ss_pred             ecCCCCcccceeEEE-ECCEEEEEccCCCCCCceEEEEEeCCC-CceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeE
Q 045821          195 HTEPNIFTEIEDSFV-MDGKIYIRCSASAATSHVCALVYEPST-DSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKL  272 (352)
Q Consensus       195 ~~~~~~~~~~~~~~~-~~g~iyv~GG~~~~~~~~~i~~yd~~~-~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v  272 (352)
                      -.  +.... ...+. .+|.||+..        ..+++||... ..|+.....  .......+.-++.||+... .+ .+
T Consensus       173 ~~--~~~~~-~~~~~d~~g~l~v~t--------~~l~~~d~~g~~~~~~~~~~--~~~~~~~~~~~g~l~v~t~-~~-gl  237 (330)
T 3hxj_A          173 KT--NDAIT-SAASIGKDGTIYFGS--------DKVYAINPDGTEKWNFYAGY--WTVTRPAISEDGTIYVTSL-DG-HL  237 (330)
T ss_dssp             EC--SSCCC-SCCEECTTCCEEEES--------SSEEEECTTSCEEEEECCSS--CCCSCCEECTTSCEEEEET-TT-EE
T ss_pred             ec--CCCce-eeeEEcCCCEEEEEe--------CEEEEECCCCcEEEEEccCC--cceeceEECCCCeEEEEcC-CC-eE
Confidence            32  11111 22233 478888864        2388888442 346654221  1112222333557776542 22 79


Q ss_pred             EEEeCCCCceEEccCCCCCcCCCCceEEEe-CCEEEEEcCCceEEEEEcC
Q 045821          273 MMWQKESREWSPVGRLSTLLTRPPCKLVAI-GKTIFVIGKGCSAVVIDVG  321 (352)
Q Consensus       273 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~i~v~gG~~~~~~~d~~  321 (352)
                      ++||+..+..........   . ...++.. ++.||+-........||+.
T Consensus       238 ~~~~~~g~~~~~~~~~~~---~-~~~~~~~~~g~l~v~t~~ggl~~~d~~  283 (330)
T 3hxj_A          238 YAINPDGTEKWRFKTGKR---I-ESSPVIGNTDTIYFGSYDGHLYAINPD  283 (330)
T ss_dssp             EEECTTSCEEEEEECSSC---C-CSCCEECTTSCEEEECTTCEEEEECTT
T ss_pred             EEECCCCCEeEEeeCCCC---c-cccceEcCCCeEEEecCCCCEEEECCC
Confidence            999876555323321111   1 1123333 6778876554467778864

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=95.68  E-value=0.83  Score=44.04  Aligned_cols=190  Identities=12%  Similarity=0.036  Sum_probs=94.2

Q ss_pred             ceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE--CCE-EEEEeCCCCCCCCCCeEEEEECCCC-eeEecCCCCCc
Q 045821           82 RVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL--GKN-AYLLGGCGWSEDATSEVYCYDASMN-TWTDAAPMSTA  157 (352)
Q Consensus        82 ~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~d~~t~-~W~~~~~~~~~  157 (352)
                      ...++++|.  .++.-..+....   ..........+  +++ |++.. .+.. .....++.+|+.++ ....+......
T Consensus       234 ~~~l~~~d~--~~~~~~~~~~~~---~~~~~~~~~~~spdg~~l~~~~-~~~~-~~~~~v~~~d~~~g~~~~~~~~~~~~  306 (706)
T 2z3z_A          234 HVTVGIYHL--ATGKTVYLQTGE---PKEKFLTNLSWSPDENILYVAE-VNRA-QNECKVNAYDAETGRFVRTLFVETDK  306 (706)
T ss_dssp             EEEEEEEET--TTTEEEECCCCS---CTTCEEEEEEECTTSSEEEEEE-ECTT-SCEEEEEEEETTTCCEEEEEEEEECS
T ss_pred             eeEEEEEEC--CCCceEeeccCC---CCceeEeeEEEECCCCEEEEEE-eCCC-CCeeEEEEEECCCCceeeEEEEccCC
Confidence            356788888  776654443221   11111122222  444 54433 2221 23458899999988 66554321111


Q ss_pred             ce---eeeeEE-E--CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECC-EEEEEccCCCCCCceEEE
Q 045821          158 RC---YFPCGV-L--NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDG-KIYIRCSASAATSHVCAL  230 (352)
Q Consensus       158 r~---~~~~~~-~--~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g-~iyv~GG~~~~~~~~~i~  230 (352)
                      ..   ...++. -  ++++++.+..+....++.+|......+.+...........+..-+| .||+.+ .........++
T Consensus       307 ~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~-~~~~~~~~~l~  385 (706)
T 2z3z_A          307 HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFES-TEASPLERHFY  385 (706)
T ss_dssp             SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEE-SSSCTTCBEEE
T ss_pred             CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEe-cCCCCceEEEE
Confidence            10   011222 2  6776655554433678888877766666643211111101122244 566654 33222345789


Q ss_pred             EEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCC---CeEEEEeCCCCc
Q 045821          231 VYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSG---TKLMMWQKESRE  281 (352)
Q Consensus       231 ~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~---~~v~~yd~~~~~  281 (352)
                      .+|..+.+.+.+...  ......+..-+++.+++.....   ..++++|.++++
T Consensus       386 ~~d~~~~~~~~l~~~--~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          386 CIDIKGGKTKDLTPE--SGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EEETTCCCCEESCCS--SSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             EEEcCCCCceeccCC--CceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            999988776666421  1111112233565554443221   469999998876

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=95.65  E-value=0.17  Score=45.83  Aligned_cols=188  Identities=6%  Similarity=0.029  Sum_probs=90.6

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCC-cceeeeeEE--ECCEEEEEeCCCCCCceEEEeCCCCcEEEe
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMST-ARCYFPCGV--LNQKIYCIGGLGDTHSWDVYDPRTNNWKLH  195 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~-~r~~~~~~~--~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~  195 (352)
                      ++.+++.|+.+      ..+.+||..+++-..+-.+.. ...-.+++.  .++..++.|+.+  ..+.++|.+++..+.+
T Consensus       131 ~~~~lasGs~d------g~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D--~~v~iwd~~~~~~~~~  202 (435)
T 4e54_B          131 HPSTVAVGSKG------GDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME--GTTRLQDFKGNILRVF  202 (435)
T ss_dssp             CTTCEEEEETT------SCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS--SCEEEEETTSCEEEEE
T ss_pred             CCCEEEEEeCC------CEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC--CEEEEeeccCCceeEE
Confidence            34566666643      347788887665332222111 111112222  245666667665  6788999988876655


Q ss_pred             cCCCCccc-cee-EEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEE--C-CEEEEEecCCCC
Q 045821          196 TEPNIFTE-IED-SFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVV--D-DALYVLDQSSGT  270 (352)
Q Consensus       196 ~~~~~~~~-~~~-~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~-~~l~~~gg~~~~  270 (352)
                      ........ ... ...-++++++.|+.++     .+..+|.....-..+.   .+...-..+.+  + +.+++.|+.++ 
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~l~~g~~dg-----~i~~wd~~~~~~~~~~---~h~~~v~~v~~~p~~~~~~~s~s~d~-  273 (435)
T 4e54_B          203 ASSDTINIWFCSLDVSASSRMVVTGDNVG-----NVILLNMDGKELWNLR---MHKKKVTHVALNPCCDWFLATASVDQ-  273 (435)
T ss_dssp             ECCSSCSCCCCCEEEETTTTEEEEECSSS-----BEEEEESSSCBCCCSB---CCSSCEEEEEECTTCSSEEEEEETTS-
T ss_pred             eccCCCCccEEEEEECCCCCEEEEEeCCC-----cEeeeccCcceeEEEe---cccceEEeeeecCCCceEEEEecCcc-
Confidence            43222111 112 2333677777765543     4777887654322211   11111112332  3 34666776665 


Q ss_pred             eEEEEeCCCCceEEccCCCCCcCCCCceEE-EeCCEEEEEcCCc-eEEEEEcCCc
Q 045821          271 KLMMWQKESREWSPVGRLSTLLTRPPCKLV-AIGKTIFVIGKGC-SAVVIDVGNI  323 (352)
Q Consensus       271 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~i~v~gG~~-~~~~~d~~~~  323 (352)
                      .+.+||..+..-...-.........-.++. ..+++.++.|+.+ .+.+||+...
T Consensus       274 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~  328 (435)
T 4e54_B          274 TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW  328 (435)
T ss_dssp             BCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred             eeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence            888999876432111000000000001111 1245555555554 4567887653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=95.65  E-value=1.7  Score=41.87  Aligned_cols=107  Identities=10%  Similarity=0.080  Sum_probs=59.7

Q ss_pred             CceEEEeCCCCcEEEecCCCCcccceeEE--EECCEEEEEccCCCCCCceEEEEEeCCCC-ceeecCCCCCCCC----CC
Q 045821          180 HSWDVYDPRTNNWKLHTEPNIFTEIEDSF--VMDGKIYIRCSASAATSHVCALVYEPSTD-SWLHADANMASGW----RG  252 (352)
Q Consensus       180 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~--~~~g~iyv~GG~~~~~~~~~i~~yd~~~~-~W~~~~~~~~~~~----~~  252 (352)
                      ..++++|..+.+-..+............+  .-+|+..+++..+.......++.+|..+. ....+.......+    ..
T Consensus       235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~  314 (706)
T 2z3z_A          235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHP  314 (706)
T ss_dssp             EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSC
T ss_pred             eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCC
Confidence            67899999988765554221111221222  23666444434443334458899999887 6665532111111    12


Q ss_pred             cEEEE--CCEEEEEecCCC-CeEEEEeCCCCceEEcc
Q 045821          253 PAVVV--DDALYVLDQSSG-TKLMMWQKESREWSPVG  286 (352)
Q Consensus       253 ~~~~~--~~~l~~~gg~~~-~~v~~yd~~~~~W~~~~  286 (352)
                      ....-  ++++++.+...+ ..++.+|..++....+.
T Consensus       315 ~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~  351 (706)
T 2z3z_A          315 LTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT  351 (706)
T ss_dssp             CEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC
T ss_pred             ceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC
Confidence            23444  788766665444 57888887777776664

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=95.62  E-value=0.98  Score=39.01  Aligned_cols=221  Identities=10%  Similarity=0.038  Sum_probs=111.9

Q ss_pred             eEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-CCEEEEEeCCCCCCCCCCeEEEEECCCC--eeEecCCCC-----
Q 045821           84 CCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-GKNAYLLGGCGWSEDATSEVYCYDASMN--TWTDAAPMS-----  155 (352)
Q Consensus        84 ~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~--~W~~~~~~~-----  155 (352)
                      .++.+|+  .++.........   ....-..++.- ++.+|+....      ...+.+||+..+  .-..+....     
T Consensus        70 ~i~~~d~--~~g~~~~~~~~~---~~~~p~gia~d~~g~l~v~d~~------~~~v~~~~~~g~~~~~~~~~~~~~~g~~  138 (329)
T 3fvz_A           70 TILVIDP--NNAEILQSSGKN---LFYLPHGLSIDTDGNYWVTDVA------LHQVFKLDPHSKEGPLLILGRSMQPGSD  138 (329)
T ss_dssp             CEEEECT--TTCCEEEEECTT---TCSSEEEEEECTTSCEEEEETT------TTEEEEECTTCSSCCSEEESBTTBCCCS
T ss_pred             cEEEEEC--CCCeEEeccCCC---ccCCceEEEECCCCCEEEEECC------CCEEEEEeCCCCeEEEEEecccCCCCCC
Confidence            4778898  777654332211   01111233333 5678887642      356889998755  222222110     


Q ss_pred             -Ccc-eeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCC-------Ccccce-eEEEE-C-CEEEEEccCC
Q 045821          156 -TAR-CYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPN-------IFTEIE-DSFVM-D-GKIYIRCSAS  221 (352)
Q Consensus       156 -~~r-~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~-------~~~~~~-~~~~~-~-g~iyv~GG~~  221 (352)
                       ... ....+++.  ++.+|+..++.. ..+.+||+....-..+....       ...... .+++. + ++||+.....
T Consensus       139 ~~~~~~P~~ia~~~~~g~lyv~d~~~~-~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~  217 (329)
T 3fvz_A          139 QNHFCQPTDVAVEPSTGAVFVSDGYCN-SRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADREN  217 (329)
T ss_dssp             TTCCSSEEEEEECTTTCCEEEEECSSC-CEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTT
T ss_pred             ccccCCCcEEEEeCCCCeEEEEeCCCC-CeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCC
Confidence             111 12233333  578999986322 78899996554333332111       111112 23332 4 8999985332


Q ss_pred             CCCCceEEEEEeCCCCceeec-CCCCCCCCCCcEEEECCEEEEEecCC------CCeEEEEeCCCCceEEc-cCCCCCcC
Q 045821          222 AATSHVCALVYEPSTDSWLHA-DANMASGWRGPAVVVDDALYVLDQSS------GTKLMMWQKESREWSPV-GRLSTLLT  293 (352)
Q Consensus       222 ~~~~~~~i~~yd~~~~~W~~~-~~~~~~~~~~~~~~~~~~l~~~gg~~------~~~v~~yd~~~~~W~~~-~~~~~~~~  293 (352)
                           ..|.+||+.+++.... ................+.+|...|..      ...+.+||..+++.... +..+.. .
T Consensus       218 -----~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~-~  291 (329)
T 3fvz_A          218 -----GRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKH-F  291 (329)
T ss_dssp             -----TEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSC-C
T ss_pred             -----CEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCc-c
Confidence                 3689999986665432 21111111111122235555555422      24789999888776544 211111 1


Q ss_pred             CCCceEEE-eCCEEEEEcC-CceEEEEEcCC
Q 045821          294 RPPCKLVA-IGKTIFVIGK-GCSAVVIDVGN  322 (352)
Q Consensus       294 ~~~~~~~~-~~~~i~v~gG-~~~~~~~d~~~  322 (352)
                      ..-.+++. .++.||+... ...+..|+++.
T Consensus       292 ~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          292 DMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             SSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             CCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            22233333 3568998764 44577788764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=95.60  E-value=1.2  Score=39.99  Aligned_cols=187  Identities=15%  Similarity=0.079  Sum_probs=99.2

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCc-EEEe
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNN-WKLH  195 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~-W~~~  195 (352)
                      ++.||+...      ....+.++|+.+++-..+.....  ..+ .+..  ++.+|+...... ..++.+|+.+.. .+.+
T Consensus       141 ~g~lyv~d~------~~~~I~~id~~~g~~~~~~~~~~--~~~-ia~~~~g~~l~~~d~~~~-~~I~~~d~~~~~~~~~~  210 (409)
T 3hrp_A          141 NNTVLAYQR------DDPRVRLISVDDNKVTTVHPGFK--GGK-PAVTKDKQRVYSIGWEGT-HTVYVYMKASGWAPTRI  210 (409)
T ss_dssp             TTEEEEEET------TTTEEEEEETTTTEEEEEEETCC--BCB-CEECTTSSEEEEEBSSTT-CEEEEEEGGGTTCEEEE
T ss_pred             CCCEEEEec------CCCcEEEEECCCCEEEEeeccCC--CCc-eeEecCCCcEEEEecCCC-ceEEEEEcCCCceeEEe
Confidence            678998864      23578999999887655432211  112 2222  346777654321 378999987653 2333


Q ss_pred             cCC-C-CcccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCceeecC---CCCCCCCC---CcEEEE-CCEEEEE
Q 045821          196 TEP-N-IFTEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTDSWLHAD---ANMASGWR---GPAVVV-DDALYVL  264 (352)
Q Consensus       196 ~~~-~-~~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~---~~~~~~~~---~~~~~~-~~~l~~~  264 (352)
                      ... . ....-+.+++.  ++.||+...      ...+++||+.+.....+.   ........   +.++.- ++.||+.
T Consensus       211 g~~~~~~~~~p~~iav~p~~g~lyv~d~------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~  284 (409)
T 3hrp_A          211 GQLGSTFSGKIGAVALDETEEWLYFVDS------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS  284 (409)
T ss_dssp             EECCTTSCSCCCBCEECTTSSEEEEECT------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred             eeccchhcCCcEEEEEeCCCCeEEEEEC------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence            111 1 11111223332  689999532      126999999877655441   11111122   223333 5889988


Q ss_pred             ecCCCCeEEEEeCCCCceEEccCC-CCC---------cCCCCceEEE-eCCEEEEEc--CCceEEEEEcCC
Q 045821          265 DQSSGTKLMMWQKESREWSPVGRL-STL---------LTRPPCKLVA-IGKTIFVIG--KGCSAVVIDVGN  322 (352)
Q Consensus       265 gg~~~~~v~~yd~~~~~W~~~~~~-~~~---------~~~~~~~~~~-~~~~i~v~g--G~~~~~~~d~~~  322 (352)
                      ....+ .|++||++...-...+.. ...         ....-.+++. .++.||+.-  +...+..+|+..
T Consensus       285 d~~~~-~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~  354 (409)
T 3hrp_A          285 DQNLS-SVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD  354 (409)
T ss_dssp             ETTTT-EEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT
T ss_pred             eCCCC-EEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC
Confidence            76544 899999876532222221 000         0111223333 256688875  455666788543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=95.60  E-value=1.8  Score=41.85  Aligned_cols=117  Identities=15%  Similarity=0.205  Sum_probs=67.7

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcc-----cCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEE
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPART-----LRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYD  142 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~-----~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d  142 (352)
                      ++.||+....     -.++.+|..+-...|+.-...+...     +.....+.+..++.||+...       ...++.+|
T Consensus        77 ~g~vyv~~~~-----~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-------dg~l~alD  144 (677)
T 1kb0_A           77 DGIMYVSASW-----SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------DGRLIALD  144 (677)
T ss_dssp             TTEEEEECGG-----GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------TSEEEEEE
T ss_pred             CCEEEEECCC-----CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-------CCEEEEEE
Confidence            7888876432     2467778722233476544332100     01122345567888888632       35789999


Q ss_pred             CCCCe--eEecCC-C-CC-cceeeeeEEECCEEEEEeCCCC---CCceEEEeCCCCc--EEEec
Q 045821          143 ASMNT--WTDAAP-M-ST-ARCYFPCGVLNQKIYCIGGLGD---THSWDVYDPRTNN--WKLHT  196 (352)
Q Consensus       143 ~~t~~--W~~~~~-~-~~-~r~~~~~~~~~~~iyv~gG~~~---~~~v~~yd~~t~~--W~~~~  196 (352)
                      ..|++  |+.-.. - .. .....+.++.++.+|+..+...   ...+..||..|++  |+.-.
T Consensus       145 ~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~  208 (677)
T 1kb0_A          145 AATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFS  208 (677)
T ss_dssp             TTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEecc
Confidence            98886  775432 1 11 1223345567889988654221   1678999999875  87643

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=95.60  E-value=0.92  Score=38.58  Aligned_cols=192  Identities=8%  Similarity=0.073  Sum_probs=88.3

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceE-EEEE---CCEEEEEeCCCCCCCCCCeEEEEEC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMG-FEVL---GKNAYLLGGCGWSEDATSEVYCYDA  143 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~  143 (352)
                      ++.+++.|+.  .+...+|.++.  ....+..+..+..   ...... +...   ++.+++.|+.+      ..+.+||.
T Consensus        22 ~~~~l~~~~~--dg~i~iw~~~~--~~~~~~~~~~~~~---~~~~v~~~~~~~~~d~~~l~s~~~d------g~v~vwd~   88 (351)
T 3f3f_A           22 YGRHVATCSS--DQHIKVFKLDK--DTSNWELSDSWRA---HDSSIVAIDWASPEYGRIIASASYD------KTVKLWEE   88 (351)
T ss_dssp             SSSEEEEEET--TSEEEEEEECS--SSCCEEEEEEEEC---CSSCEEEEEECCGGGCSEEEEEETT------SCEEEEEE
T ss_pred             CCCEEEEeeC--CCeEEEEECCC--CCCcceecceecc---CCCcEEEEEEcCCCCCCEEEEEcCC------CeEEEEec
Confidence            4445556653  23455554444  4555555443331   111222 2222   25666666643      35777887


Q ss_pred             CCCe-------eEecCCCCCcceeeeeEEE--C--CEEEEEeCCCCCCceEEEeCCCCc----EEEec---CC---CCcc
Q 045821          144 SMNT-------WTDAAPMSTARCYFPCGVL--N--QKIYCIGGLGDTHSWDVYDPRTNN----WKLHT---EP---NIFT  202 (352)
Q Consensus       144 ~t~~-------W~~~~~~~~~r~~~~~~~~--~--~~iyv~gG~~~~~~v~~yd~~t~~----W~~~~---~~---~~~~  202 (352)
                      .+++       |..+..+...........+  +  +..++.|+.+  ..+.+||..+.+    |....   .+   +...
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (351)
T 3f3f_A           89 DPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND--GILRLYDALEPSDLRSWTLTSEMKVLSIPPANH  166 (351)
T ss_dssp             CTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT--CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSC
T ss_pred             CCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC--CcEEEecCCChHHhccccccccccccccccCCc
Confidence            7642       2322222211111112222  3  5566666654  678899987653    32111   01   1111


Q ss_pred             cc-eeEEEE-----CCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEE--EECC----EEEEEecCCCC
Q 045821          203 EI-EDSFVM-----DGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAV--VVDD----ALYVLDQSSGT  270 (352)
Q Consensus       203 ~~-~~~~~~-----~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~--~~~~----~l~~~gg~~~~  270 (352)
                      .. ......     ++.+++.|+..+     .+..++....+...+.....+...-..+  .-++    .+++.|+.++ 
T Consensus       167 ~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg-  240 (351)
T 3f3f_A          167 LQSDFCLSWCPSRFSPEKLAVSALEQ-----AIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG-  240 (351)
T ss_dssp             SCCCEEEEECCCSSSCCEEEEEETTE-----EEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS-
T ss_pred             ccceeEEEeccCCCCCcEEEEecCCC-----cEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC-
Confidence            11 111222     366666655442     3445555555554332211111111112  2244    7778887766 


Q ss_pred             eEEEEeCCCC
Q 045821          271 KLMMWQKESR  280 (352)
Q Consensus       271 ~v~~yd~~~~  280 (352)
                      .+.+||..+.
T Consensus       241 ~i~iwd~~~~  250 (351)
T 3f3f_A          241 RIRIFKITEK  250 (351)
T ss_dssp             CEEEEEEEEC
T ss_pred             eEEEEeCCCC
Confidence            7888887653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=95.59  E-value=0.11  Score=53.98  Aligned_cols=187  Identities=9%  Similarity=0.035  Sum_probs=94.5

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecCC
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEP  198 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~  198 (352)
                      ++..+++|+.+      ..+.+||..+++..................-+++..+.|+.+  ..+.+||..++....+...
T Consensus       972 ~g~~l~~g~~~------g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d--g~i~vwd~~~~~~~~~~~~ 1043 (1249)
T 3sfz_A          972 HLEYVAFGDED------GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSED--SVIQVWNWQTGDYVFLQAH 1043 (1249)
T ss_dssp             TSSEEEEEETT------SCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSS--SBEEEEETTTTEEECCBCC
T ss_pred             CCCEEEEEcCC------CCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCC--CEEEEEECCCCceEEEecC
Confidence            44455555432      357788887765332211111111111112256666667655  6789999999876543311


Q ss_pred             CCcccceeEEEE-CCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeC
Q 045821          199 NIFTEIEDSFVM-DGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQK  277 (352)
Q Consensus       199 ~~~~~~~~~~~~-~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~  277 (352)
                        .......... ++.+ +.++.++     .+..||..+++-...-..........++..+++.++.|+.++ .+.+||.
T Consensus      1044 --~~~v~~~~~~~~~~l-~~~~~dg-----~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~-~v~iwd~ 1114 (1249)
T 3sfz_A         1044 --QETVKDFRLLQDSRL-LSWSFDG-----TVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADK-TAKIWSF 1114 (1249)
T ss_dssp             --SSCEEEEEECSSSEE-EEEESSS-----EEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSS-CCCEECS
T ss_pred             --CCcEEEEEEcCCCcE-EEEECCC-----cEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCC-cEEEEEC
Confidence              1111122333 4454 4444442     578888877653322111111112223344677777777666 7889988


Q ss_pred             CCCceEEccCCCCCcCCCCceE-EEeCCEEEEEcCCce-EEEEEcCCccc
Q 045821          278 ESREWSPVGRLSTLLTRPPCKL-VAIGKTIFVIGKGCS-AVVIDVGNIGN  325 (352)
Q Consensus       278 ~~~~W~~~~~~~~~~~~~~~~~-~~~~~~i~v~gG~~~-~~~~d~~~~~w  325 (352)
                      .+.+  .+..+... .....++ ...++++++.|+.+. +.+||+.+...
T Consensus      1115 ~~~~--~~~~l~~h-~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~ 1161 (1249)
T 3sfz_A         1115 DLLS--PLHELKGH-NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL 1161 (1249)
T ss_dssp             SSSS--CSBCCCCC-SSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCC
T ss_pred             CCcc--eeeeeccC-CCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCce
Confidence            7654  22222211 1111122 223666777776554 66899886553

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=95.58  E-value=1  Score=46.56  Aligned_cols=188  Identities=8%  Similarity=0.052  Sum_probs=87.8

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE---CCEEEEEeCCCCCCceEEEeCCCCcEEEe
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL---NQKIYCIGGLGDTHSWDVYDPRTNNWKLH  195 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~---~~~iyv~gG~~~~~~v~~yd~~t~~W~~~  195 (352)
                      ++..++.|+.      ...+.+||..+++....-....... .+++..   ++.+.+.|+.+  ..+.+||..+......
T Consensus       668 ~~~~l~s~~~------d~~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~sg~~d--~~v~vwd~~~~~~~~~  738 (1249)
T 3sfz_A          668 DDSYIATCSA------DKKVKIWDSATGKLVHTYDEHSEQV-NCCHFTNKSNHLLLATGSND--FFLKLWDLNQKECRNT  738 (1249)
T ss_dssp             TSSEEEEEET------TSEEEEEETTTCCEEEEEECCSSCE-EEEEECSSSSCCEEEEEETT--SCEEEEETTSSSEEEE
T ss_pred             CCCEEEEEeC------CCeEEEEECCCCceEEEEcCCCCcE-EEEEEecCCCceEEEEEeCC--CeEEEEECCCcchhhe
Confidence            4555666653      3468899998876432211111111 112221   23455555544  6789999988765433


Q ss_pred             cCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceee-cCC--------CCCC----CCCCcEEEECCEEE
Q 045821          196 TEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLH-ADA--------NMAS----GWRGPAVVVDDALY  262 (352)
Q Consensus       196 ~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~-~~~--------~~~~----~~~~~~~~~~~~l~  262 (352)
                      -..........+..-+++..+.|+.++     .+..||..+..-.. +..        .+..    .....+..-+++.+
T Consensus       739 ~~~h~~~v~~~~~sp~~~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  813 (1249)
T 3sfz_A          739 MFGHTNSVNHCRFSPDDELLASCSADG-----TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKI  813 (1249)
T ss_dssp             ECCCSSCEEEEEECSSTTEEEEEESSS-----EEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEE
T ss_pred             ecCCCCCEEEEEEecCCCEEEEEECCC-----eEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEE
Confidence            211111111112223666666665542     46777776553221 100        0000    11111223356666


Q ss_pred             EEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEcCCc-eEEEEEcCCc
Q 045821          263 VLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGC-SAVVIDVGNI  323 (352)
Q Consensus       263 ~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~-~~~~~d~~~~  323 (352)
                      ++++. + .+..||..+......-..... ....+.....++.+++.|+.+ .+.++|..+.
T Consensus       814 ~~~~~-~-~v~~~d~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~  872 (1249)
T 3sfz_A          814 IVAAK-N-KVLLFDIHTSGLLAEIHTGHH-STIQYCDFSPYDHLAVIALSQYCVELWNIDSR  872 (1249)
T ss_dssp             EEEET-T-EEEEEETTTCCEEEEEECSSS-SCCCEEEECSSTTEEEEECSSSCEEEEETTTT
T ss_pred             EEEcC-C-cEEEEEecCCCceeEEcCCCC-CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Confidence            66553 2 899999988765443221111 111112222344555555444 4556776653

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=95.53  E-value=1.1  Score=38.85  Aligned_cols=150  Identities=7%  Similarity=-0.031  Sum_probs=76.0

Q ss_pred             CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeE-EEECCEEEEEccCCCCCCceEEEEEeCCCCcee--ecC
Q 045821          167 NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDS-FVMDGKIYIRCSASAATSHVCALVYEPSTDSWL--HAD  243 (352)
Q Consensus       167 ~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~-~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~--~~~  243 (352)
                      ++..++.|+.+  ..+.+||..+.+-..+...........+ ..-++.+++.|+.++     .+..||..+.+-.  .+.
T Consensus       138 ~~~~l~s~s~d--g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg-----~i~iwd~~~~~~~~~~~~  210 (343)
T 3lrv_A          138 NTEYFIWADNR--GTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG-----ILDVYNLSSPDQASSRFP  210 (343)
T ss_dssp             -CCEEEEEETT--CCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS-----CEEEEESSCTTSCCEECC
T ss_pred             CCCEEEEEeCC--CcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC-----EEEEEECCCCCCCccEEe
Confidence            45666767755  6789999998876443322221112222 223678888866553     5888898776533  222


Q ss_pred             CCCCCCCCCcEEE--ECCEEEEEecCCCCeEEEEeCCCCceE-EccCCCCC-cCCCCceEE-EeCCEEEEE-cC-CceEE
Q 045821          244 ANMASGWRGPAVV--VDDALYVLDQSSGTKLMMWQKESREWS-PVGRLSTL-LTRPPCKLV-AIGKTIFVI-GK-GCSAV  316 (352)
Q Consensus       244 ~~~~~~~~~~~~~--~~~~l~~~gg~~~~~v~~yd~~~~~W~-~~~~~~~~-~~~~~~~~~-~~~~~i~v~-gG-~~~~~  316 (352)
                      .  .+...-..+.  -++..++.++ .+ .+.+||..+..-. .+...... ......++. ..+++.++. ++ ...+.
T Consensus       211 ~--~h~~~v~~l~fs~~g~~l~s~~-~~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~  286 (343)
T 3lrv_A          211 V--DEEAKIKEVKFADNGYWMVVEC-DQ-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLT  286 (343)
T ss_dssp             C--CTTSCEEEEEECTTSSEEEEEE-SS-BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             c--cCCCCEEEEEEeCCCCEEEEEe-CC-eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEE
Confidence            1  0111111222  2566666666 44 8999999875421 11111100 001111122 224555555 33 55677


Q ss_pred             EEEcC--Cccccc
Q 045821          317 VIDVG--NIGNIG  327 (352)
Q Consensus       317 ~~d~~--~~~w~~  327 (352)
                      +|+.+  ...|..
T Consensus       287 v~~~~~~~~~~~~  299 (343)
T 3lrv_A          287 IYKFDKKTKNWTK  299 (343)
T ss_dssp             EEEECTTTCSEEE
T ss_pred             EEEEcccccceEe
Confidence            88774  445765

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=95.47  E-value=1.2  Score=39.18  Aligned_cols=147  Identities=9%  Similarity=0.010  Sum_probs=75.2

Q ss_pred             EEEEEeCCCCCCceEEEeCCCCcEEEecC--CCCcccce-eEEEE---CCEEEEEccCCCCCCceEEEEEeCCCC--cee
Q 045821          169 KIYCIGGLGDTHSWDVYDPRTNNWKLHTE--PNIFTEIE-DSFVM---DGKIYIRCSASAATSHVCALVYEPSTD--SWL  240 (352)
Q Consensus       169 ~iyv~gG~~~~~~v~~yd~~t~~W~~~~~--~~~~~~~~-~~~~~---~g~iyv~GG~~~~~~~~~i~~yd~~~~--~W~  240 (352)
                      ..++.|+.+  ..+.+||..+++-...-.  .+..+... ..+.+   ++.+++.|+.++     .+..||....  .-.
T Consensus       171 ~~l~s~s~D--~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~-----~v~~wd~~~~~~~~~  243 (380)
T 3iz6_a          171 TRLITGSGD--QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT-----TVRLWDLRITSRAVR  243 (380)
T ss_dssp             SCEEEECTT--SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS-----CEEEEETTTTCCCCE
T ss_pred             CEEEEECCC--CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC-----eEEEEECCCCCcceE
Confidence            344555544  688999999886543321  11222111 12222   677888876653     4777887522  122


Q ss_pred             ecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceEEccCC-CCCc----CCCCceEEEeCCEEEEEcCCc-e
Q 045821          241 HADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRL-STLL----TRPPCKLVAIGKTIFVIGKGC-S  314 (352)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~-~~~~----~~~~~~~~~~~~~i~v~gG~~-~  314 (352)
                      .+.. ...........-++..++.|+.++ .+.+||..++.-...-.. +...    ..........++++++.|+.+ .
T Consensus       244 ~~~~-h~~~v~~v~~~p~~~~l~s~s~D~-~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~  321 (380)
T 3iz6_a          244 TYHG-HEGDINSVKFFPDGQRFGTGSDDG-TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD  321 (380)
T ss_dssp             EECC-CSSCCCEEEECTTSSEEEEECSSS-CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC
T ss_pred             EECC-cCCCeEEEEEecCCCeEEEEcCCC-eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC
Confidence            2211 011111111223677777887766 899999988764433211 1100    011122223466666667655 4


Q ss_pred             EEEEEcCCcc
Q 045821          315 AVVIDVGNIG  324 (352)
Q Consensus       315 ~~~~d~~~~~  324 (352)
                      +.++|.....
T Consensus       322 i~vwd~~~~~  331 (380)
T 3iz6_a          322 CYVWDTLLAE  331 (380)
T ss_dssp             EEEEETTTCC
T ss_pred             EEEEECCCCc
Confidence            6689976543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=95.44  E-value=0.86  Score=44.18  Aligned_cols=104  Identities=7%  Similarity=-0.020  Sum_probs=57.8

Q ss_pred             ceEEEeCCC-CcEEEecCCC-Cccc-ceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCC----CCCc
Q 045821          181 SWDVYDPRT-NNWKLHTEPN-IFTE-IEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASG----WRGP  253 (352)
Q Consensus       181 ~v~~yd~~t-~~W~~~~~~~-~~~~-~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~----~~~~  253 (352)
                      .++++|..+ .+-+.+.... .... ...+. -+|+..++...........++.+|..+.+...+.......    ....
T Consensus       264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~  342 (741)
T 2ecf_A          264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSL  342 (741)
T ss_dssp             EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCC
T ss_pred             EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCce
Confidence            778889988 7655554221 1111 12233 5555444433333334458999999988876653211111    1233


Q ss_pred             EEEECCEEEEEecCCC-CeEEEEeCCCCceEEcc
Q 045821          254 AVVVDDALYVLDQSSG-TKLMMWQKESREWSPVG  286 (352)
Q Consensus       254 ~~~~~~~l~~~gg~~~-~~v~~yd~~~~~W~~~~  286 (352)
                      +..-++++++.++..+ ..++.+|..+. ...+.
T Consensus       343 ~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~  375 (741)
T 2ecf_A          343 RFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT  375 (741)
T ss_dssp             EECTTSCEEEEECTTSSCEEEEECSSSC-EEESC
T ss_pred             EECCCCeEEEEecCCCccEEEEEcCCCC-eeeee
Confidence            4445777776666554 57888887766 55554

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=95.44  E-value=0.49  Score=40.92  Aligned_cols=143  Identities=13%  Similarity=0.121  Sum_probs=72.4

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEE---ECCEEEEEeCCCCCCceEEEeCCCCcEEEe
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGV---LNQKIYCIGGLGDTHSWDVYDPRTNNWKLH  195 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~---~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~  195 (352)
                      ++..++.|+.      ...+.+||..+++...+.....+-  .++..   -++..++.++.+  ..+.+||..+.+-...
T Consensus        97 ~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~  166 (368)
T 3mmy_A           97 DGSKVFTASC------DKTAKMWDLSSNQAIQIAQHDAPV--KTIHWIKAPNYSCVMTGSWD--KTLKFWDTRSSNPMMV  166 (368)
T ss_dssp             TSSEEEEEET------TSEEEEEETTTTEEEEEEECSSCE--EEEEEEECSSCEEEEEEETT--SEEEEECSSCSSCSEE
T ss_pred             CCCEEEEEcC------CCcEEEEEcCCCCceeeccccCce--EEEEEEeCCCCCEEEEccCC--CcEEEEECCCCcEEEE
Confidence            4555555553      346889999988755433222211  12222   256777777765  6789999887642211


Q ss_pred             cCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCC--ceeecCCCCCCCCCCcEEEEC----CEEEEEecCCC
Q 045821          196 TEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTD--SWLHADANMASGWRGPAVVVD----DALYVLDQSSG  269 (352)
Q Consensus       196 ~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~----~~l~~~gg~~~  269 (352)
                      -..  .............+++.++..      .+..||....  .+..+............+..+    ...++.|+.++
T Consensus       167 ~~~--~~~~~~~~~~~~~~~~~~~~~------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg  238 (368)
T 3mmy_A          167 LQL--PERCYCADVIYPMAVVATAER------GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEG  238 (368)
T ss_dssp             EEC--SSCEEEEEEETTEEEEEEGGG------CEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTS
T ss_pred             Eec--CCCceEEEecCCeeEEEeCCC------cEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCC
Confidence            111  112222333455555543222      3667776544  344443322211111122222    23366666665


Q ss_pred             CeEEEEeCCCC
Q 045821          270 TKLMMWQKESR  280 (352)
Q Consensus       270 ~~v~~yd~~~~  280 (352)
                       .+.+||....
T Consensus       239 -~i~i~~~~~~  248 (368)
T 3mmy_A          239 -RVAIHYINPP  248 (368)
T ss_dssp             -EEEEEESSCS
T ss_pred             -cEEEEecCCC
Confidence             8999998875

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=95.41  E-value=0.089  Score=45.54  Aligned_cols=147  Identities=12%  Similarity=0.039  Sum_probs=73.6

Q ss_pred             CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEE-EECC-EEEEEccCCCCCCceEEEEEeCCCCceee-cC
Q 045821          167 NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSF-VMDG-KIYIRCSASAATSHVCALVYEPSTDSWLH-AD  243 (352)
Q Consensus       167 ~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~-~~~g-~iyv~GG~~~~~~~~~i~~yd~~~~~W~~-~~  243 (352)
                      ++++|+.++.+  ..+.++|..+++....-..+........+ .-+| .+|+.+...     ..+..||+.+++-.. +.
T Consensus        10 ~~~~~v~~~~~--~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~-----~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B           10 GHEYMIVTNYP--NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY-----GDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             TCEEEEEEETT--TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEeCCC--CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCC-----CcEEEEeCCCCcEEEEEE
Confidence            56788877655  78899999988654332222210112222 2345 577775322     368899998776542 22


Q ss_pred             CCCC-----CCCCCcEEEECCE-EEEEecC----------CCCeEEEEeCCCCceEE-ccCCCCCcCCCCceE-EEeCCE
Q 045821          244 ANMA-----SGWRGPAVVVDDA-LYVLDQS----------SGTKLMMWQKESREWSP-VGRLSTLLTRPPCKL-VAIGKT  305 (352)
Q Consensus       244 ~~~~-----~~~~~~~~~~~~~-l~~~gg~----------~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~-~~~~~~  305 (352)
                      ....     ..-...++.-+++ ||+.+..          ....+.+||+++++-.+ +...+.  .....++ ...+++
T Consensus        83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~  160 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM--PRQVYLMRAADDGS  160 (349)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC--CSSCCCEEECTTSC
T ss_pred             cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC--CCcccceeECCCCc
Confidence            1110     0011222333554 4544421          02389999998743211 111111  1111222 233566


Q ss_pred             EEEEcCCceEEEEEcCCcc
Q 045821          306 IFVIGKGCSAVVIDVGNIG  324 (352)
Q Consensus       306 i~v~gG~~~~~~~d~~~~~  324 (352)
                      +|+.++  .+.++|+++..
T Consensus       161 l~~~~~--~i~~~d~~~~~  177 (349)
T 1jmx_B          161 LYVAGP--DIYKMDVKTGK  177 (349)
T ss_dssp             EEEESS--SEEEECTTTCC
T ss_pred             EEEccC--cEEEEeCCCCc
Confidence            777544  37788887654

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=95.40  E-value=1.4  Score=39.27  Aligned_cols=218  Identities=14%  Similarity=0.186  Sum_probs=112.4

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE---CCEEEEEeCCCCCCCCCCeEEEEECC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL---GKNAYLLGGCGWSEDATSEVYCYDAS  144 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~  144 (352)
                      ++.||+ |+.   .  -.++++.+....+|+.+....   ....-++++..   .+.||+.+....   .-..+++.+-.
T Consensus        22 ~g~l~v-gt~---~--Gl~~~~~~~~g~~W~~~~~~~---~~~~v~~i~~dp~~~~~l~~g~~~g~---~g~gl~~s~D~   89 (394)
T 3b7f_A           22 PVMLLV-ATI---K--GAWFLASDPARRTWELRGPVF---LGHTIHHIVQDPREPERMLMAARTGH---LGPTVFRSDDG   89 (394)
T ss_dssp             CCEEEE-EET---T--EEEEEEECTTSCSEEEEEEES---TTSEEEEEEECSSSTTCEEEEEEC-----CCEEEEEESST
T ss_pred             CCEEEE-Eec---C--ceEEEECCCCCCCceECCccC---CCCceEEEEECCCCCCeEEEEecCCC---CCccEEEeCCC
Confidence            455664 443   1  245555411337899874221   11222333333   467887653211   11256777666


Q ss_pred             CCeeEecCCC---CC-c-c-------eeeeeEEE----CCEEEEEeCCCCCCceEEEeCCCCcEEEecCC---CC-----
Q 045821          145 MNTWTDAAPM---ST-A-R-------CYFPCGVL----NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEP---NI-----  200 (352)
Q Consensus       145 t~~W~~~~~~---~~-~-r-------~~~~~~~~----~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~---~~-----  200 (352)
                      ..+|+.+...   +. + +       .-.+++..    .+.+|+.+..   ..+++.+....+|+.+...   +.     
T Consensus        90 G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~---ggl~~S~DgG~tW~~~~~~~~~p~~~~~~  166 (394)
T 3b7f_A           90 GGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSP---QGLFRSTDHGASWEPVAGFNDHPMRRAWT  166 (394)
T ss_dssp             TSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEET---TEEEEESSTTSBCEECHHHHTCTTHHHHH
T ss_pred             CCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecC---CcEEEEcCCCCCeEECcCccCCccccccc
Confidence            7789987632   11 1 1       11123332    4678876432   4578887778899987531   11     


Q ss_pred             ---------cccceeEEEE---CCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCC----------CCcEEEEC
Q 045821          201 ---------FTEIEDSFVM---DGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGW----------RGPAVVVD  258 (352)
Q Consensus       201 ---------~~~~~~~~~~---~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~----------~~~~~~~~  258 (352)
                               ......+++.   .+.||+....      ..+++.+....+|+.+........          ....+..+
T Consensus       167 ~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~  240 (394)
T 3b7f_A          167 GGEQDGTPDGPKMHSILVDPRDPKHLYIGMSS------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQH  240 (394)
T ss_dssp             CCC----CCCCEEEEEEECTTCTTCEEEEEET------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEEC
T ss_pred             cccccCCCCCCceeEEEECCCCCCEEEEEECC------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEEC
Confidence                     0111222222   3578876322      147788888889998754221110          11123322


Q ss_pred             ----CEEEEEecCCCCeEEEEeCCCCceEEccC-CCCCcCCCCceEEE---eCCEEEEE
Q 045821          259 ----DALYVLDQSSGTKLMMWQKESREWSPVGR-LSTLLTRPPCKLVA---IGKTIFVI  309 (352)
Q Consensus       259 ----~~l~~~gg~~~~~v~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~---~~~~i~v~  309 (352)
                          +.||+... .  .|++.+....+|+.+.. +|.......+.++.   ..+.||+.
T Consensus       241 ~~~~~~l~vg~~-~--gl~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~  296 (394)
T 3b7f_A          241 PAAPDILYQQNH-C--GIYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF  296 (394)
T ss_dssp             SSSTTEEEEEET-T--EEEEEETTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred             CCCCCEEEEEcC-C--eEEEeCCCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence                56666432 2  69999999999999864 44311122234443   24678886

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=95.34  E-value=0.46  Score=43.06  Aligned_cols=148  Identities=6%  Similarity=-0.069  Sum_probs=72.5

Q ss_pred             EEEEEeCCCCCCCCCCeEEEEECC--CCeeE-ecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEE-e
Q 045821          121 NAYLLGGCGWSEDATSEVYCYDAS--MNTWT-DAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKL-H  195 (352)
Q Consensus       121 ~iyv~GG~~~~~~~~~~~~~~d~~--t~~W~-~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~-~  195 (352)
                      .+++.|+.      ...+.+||..  +++.. .+.....+..-.+++.. ++..++.|+.+  ..+..++..+..... .
T Consensus       116 ~l~~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~--g~v~~~~~~~~~~~~~~  187 (450)
T 2vdu_B          116 RLIACADS------DKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKF--GDVYSIDINSIPEEKFT  187 (450)
T ss_dssp             EEEEEEGG------GTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT--SEEEEEETTSCCCSSCC
T ss_pred             EEEEEECC------CCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCC--CcEEEEecCCccccccc
Confidence            44566654      2457788877  44322 11100111111112222 45555666543  567888887654321 0


Q ss_pred             -cCCCCcc--cceeEEEEC---CEEEEEccCCCCCCceEEEEEeCCCCceeec-CCCCCCCCCCcEEEECCEEEEEecCC
Q 045821          196 -TEPNIFT--EIEDSFVMD---GKIYIRCSASAATSHVCALVYEPSTDSWLHA-DANMASGWRGPAVVVDDALYVLDQSS  268 (352)
Q Consensus       196 -~~~~~~~--~~~~~~~~~---g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~-~~~~~~~~~~~~~~~~~~l~~~gg~~  268 (352)
                       ..+....  ....+..-+   +++++.|+.++     .+..||..+.+.... ............+. ++++++.|+.+
T Consensus       188 ~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~-----~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d  261 (450)
T 2vdu_B          188 QEPILGHVSMLTDVHLIKDSDGHQFIITSDRDE-----HIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGD  261 (450)
T ss_dssp             CCCSEECSSCEEEEEEEECTTSCEEEEEEETTS-----CEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESS
T ss_pred             ceeeecccCceEEEEEcCCCCCCcEEEEEcCCC-----cEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCC
Confidence             0111111  111223346   77777766542     477777766543321 11111111111223 77777788766


Q ss_pred             CCeEEEEeCCCCceE
Q 045821          269 GTKLMMWQKESREWS  283 (352)
Q Consensus       269 ~~~v~~yd~~~~~W~  283 (352)
                      + .|.+||..+++..
T Consensus       262 ~-~v~vwd~~~~~~~  275 (450)
T 2vdu_B          262 D-KIFAWDWKTGKNL  275 (450)
T ss_dssp             S-EEEEEETTTCCEE
T ss_pred             C-eEEEEECCCCcEe
Confidence            6 8999999887643

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=95.34  E-value=2.2  Score=41.22  Aligned_cols=195  Identities=8%  Similarity=0.050  Sum_probs=96.9

Q ss_pred             ceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCC-------CCCCeEEEEECCCCee--EecC
Q 045821           82 RVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSE-------DATSEVYCYDASMNTW--TDAA  152 (352)
Q Consensus        82 ~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~-------~~~~~~~~~d~~t~~W--~~~~  152 (352)
                      ...++++|.  .++.......++   ........-.-+++.++++..+...       .....+++++..+.+-  ..+.
T Consensus       146 ~~~i~v~dl--~tg~~~~~~~~~---~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~  220 (695)
T 2bkl_A          146 EAVLHVIDV--DSGEWSKVDVIE---GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH  220 (695)
T ss_dssp             CCEEEEEET--TTCCBCSSCCBS---CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE
T ss_pred             eEEEEEEEC--CCCCCcCCcccC---cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE
Confidence            356777888  777653111111   1111111222355555554432210       1245689999887753  2222


Q ss_pred             CCCC-cceeeeeEEE-CCEEEEEeCCCC-C-CceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceE
Q 045821          153 PMST-ARCYFPCGVL-NQKIYCIGGLGD-T-HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVC  228 (352)
Q Consensus       153 ~~~~-~r~~~~~~~~-~~~iyv~gG~~~-~-~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~  228 (352)
                      ..+. +........- +++..++..... . ..++.+|..+..++.+.......  ...+..+|.+|+....  ......
T Consensus       221 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~--~~~~~~~g~l~~~s~~--~~~~~~  296 (695)
T 2bkl_A          221 ERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAK--YEVHAWKDRFYVLTDE--GAPRQR  296 (695)
T ss_dssp             CCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCC--EEEEEETTEEEEEECT--TCTTCE
T ss_pred             ecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCce--EEEEecCCcEEEEECC--CCCCCE
Confidence            2221 1122222222 454333333222 2 67888887777888876322211  1222356676665322  122347


Q ss_pred             EEEEeCCCCc---eeecCCCCCCCCCCcEEEECCEEEEEecCCC-CeEEEEeCCCCceEEc
Q 045821          229 ALVYEPSTDS---WLHADANMASGWRGPAVVVDDALYVLDQSSG-TKLMMWQKESREWSPV  285 (352)
Q Consensus       229 i~~yd~~~~~---W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~-~~v~~yd~~~~~W~~~  285 (352)
                      ++.+|..+..   |+.+-...+..........++.|++....++ ..++.+|...+.-.++
T Consensus       297 l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l  357 (695)
T 2bkl_A          297 VFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTV  357 (695)
T ss_dssp             EEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEEC
T ss_pred             EEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEe
Confidence            8899987654   8776432211111112334888887766544 4788888765544444

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.34  E-value=0.56  Score=41.24  Aligned_cols=147  Identities=12%  Similarity=0.001  Sum_probs=78.2

Q ss_pred             CCeEEEEECCCCeeEecCCCCCcceeeeeEEE-CCE-EEEEeCCCCC----CceEEEeCCCCcEEEecCCCCcccceeEE
Q 045821          135 TSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQK-IYCIGGLGDT----HSWDVYDPRTNNWKLHTEPNIFTEIEDSF  208 (352)
Q Consensus       135 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~-iyv~gG~~~~----~~v~~yd~~t~~W~~~~~~~~~~~~~~~~  208 (352)
                      ...++.+|..+++...+..... ...+....- ++. |++... ...    ..++.+|..+..++.+.............
T Consensus       167 ~~~l~~~d~~~g~~~~~~~~~~-~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~  244 (396)
T 3c5m_A          167 TCRLIKVDIETGELEVIHQDTA-WLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEF  244 (396)
T ss_dssp             CEEEEEEETTTCCEEEEEEESS-CEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEE
T ss_pred             cceEEEEECCCCcEEeeccCCc-ccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeeccCCCccccceE
Confidence            4578999999887766542111 111111111 243 544432 211    57899999888877765411111111122


Q ss_pred             -EECCE-EEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEE-CCEEEEEecC---------------CCC
Q 045821          209 -VMDGK-IYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVV-DDALYVLDQS---------------SGT  270 (352)
Q Consensus       209 -~~~g~-iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~l~~~gg~---------------~~~  270 (352)
                       .-+|+ |+.. ..........++.+|+.+++...+.....  . ...... +++++++++.               ...
T Consensus       245 ~spdg~~l~~~-~~~~~~~~~~l~~~d~~~g~~~~l~~~~~--~-~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~  320 (396)
T 3c5m_A          245 WIPDGSAMAYV-SYFKGQTDRVIYKANPETLENEEVMVMPP--C-SHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDP  320 (396)
T ss_dssp             ECTTSSCEEEE-EEETTTCCEEEEEECTTTCCEEEEEECCS--E-EEEEECSSSSEEEEEECCC----------CCCCCC
T ss_pred             ECCCCCEEEEE-ecCCCCccceEEEEECCCCCeEEeeeCCC--C-CCCccCCCCceEEEecCCcceeeccccccccCCCC
Confidence             22565 4444 22222222358999998887766543211  1 123344 6776665431               124


Q ss_pred             eEEEEeCCCCceEEccC
Q 045821          271 KLMMWQKESREWSPVGR  287 (352)
Q Consensus       271 ~v~~yd~~~~~W~~~~~  287 (352)
                      .++++|+.+++...+..
T Consensus       321 ~i~~~d~~~~~~~~l~~  337 (396)
T 3c5m_A          321 FLYVLNTKAKSAQKLCK  337 (396)
T ss_dssp             EEEEEETTTTBCCEEEE
T ss_pred             cEEEEecccCceEEccC
Confidence            89999999887766643

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=95.33  E-value=0.095  Score=46.41  Aligned_cols=104  Identities=8%  Similarity=0.026  Sum_probs=53.8

Q ss_pred             CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE---CCEEEEEccCCCCCCceEEEEEeCCCCceeecC
Q 045821          167 NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM---DGKIYIRCSASAATSHVCALVYEPSTDSWLHAD  243 (352)
Q Consensus       167 ~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~---~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~  243 (352)
                      ++.+++.++.+  ..+.+||..+..-...-....... ......   ++.+++.|+..+     .+..||..+.+-...-
T Consensus       111 ~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~v~~~d~~~~~~~~~~  182 (408)
T 4a11_B          111 DTGMFTSSSFD--KTLKVWDTNTLQTADVFNFEETVY-SHHMSPVSTKHCLVAVGTRGP-----KVQLCDLKSGSCSHIL  182 (408)
T ss_dssp             CTTCEEEEETT--SEEEEEETTTTEEEEEEECSSCEE-EEEECSSCSSCCEEEEEESSS-----SEEEEESSSSCCCEEE
T ss_pred             CCcEEEEEeCC--CeEEEeeCCCCccceeccCCCcee-eeEeecCCCCCcEEEEEcCCC-----eEEEEeCCCcceeeee
Confidence            44566666654  678999998876544332221111 111111   344666655442     4778888665432211


Q ss_pred             CCCCCCCCCcEEE--ECCE-EEEEecCCCCeEEEEeCCCCc
Q 045821          244 ANMASGWRGPAVV--VDDA-LYVLDQSSGTKLMMWQKESRE  281 (352)
Q Consensus       244 ~~~~~~~~~~~~~--~~~~-l~~~gg~~~~~v~~yd~~~~~  281 (352)
                      .  ........+.  -++. +++.|+.++ .+.+||..+..
T Consensus       183 ~--~~~~~v~~~~~~~~~~~ll~~~~~dg-~i~i~d~~~~~  220 (408)
T 4a11_B          183 Q--GHRQEILAVSWSPRYDYILATASADS-RVKLWDVRRAS  220 (408)
T ss_dssp             C--CCCSCEEEEEECSSCTTEEEEEETTS-CEEEEETTCSS
T ss_pred             c--CCCCcEEEEEECCCCCcEEEEEcCCC-cEEEEECCCCC
Confidence            1  0111111122  2344 677777766 89999987653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.31  E-value=2  Score=40.73  Aligned_cols=119  Identities=16%  Similarity=0.179  Sum_probs=70.0

Q ss_pred             EEEECCEEEEEeCCCCCCCCCCeEEEEEC-CCCe--eEecCCCCCc-----c---eeeeeEE--ECCE----EEEEeCCC
Q 045821          115 FEVLGKNAYLLGGCGWSEDATSEVYCYDA-SMNT--WTDAAPMSTA-----R---CYFPCGV--LNQK----IYCIGGLG  177 (352)
Q Consensus       115 ~~~~~~~iyv~GG~~~~~~~~~~~~~~d~-~t~~--W~~~~~~~~~-----r---~~~~~~~--~~~~----iyv~gG~~  177 (352)
                      -++.++.||+....      ...++.+|. .+++  |+.-......     +   .....++  .+++    ||+.... 
T Consensus        58 P~v~~g~vyv~~~~------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~d-  130 (599)
T 1w6s_A           58 PLVVDGKMYIHTSF------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLD-  130 (599)
T ss_dssp             CEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTT-
T ss_pred             cEEECCEEEEEeCC------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCC-
Confidence            35669999998542      346899999 7775  8765443211     1   1223455  5666    8886432 


Q ss_pred             CCCceEEEeCCCCc--EEEecCCCCc--ccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCc--eeec
Q 045821          178 DTHSWDVYDPRTNN--WKLHTEPNIF--TEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDS--WLHA  242 (352)
Q Consensus       178 ~~~~v~~yd~~t~~--W~~~~~~~~~--~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~--W~~~  242 (352)
                        ..+..+|..|.+  |+.-......  .....-++.++++|+-.+..+......+..||..+.+  |+.-
T Consensus       131 --g~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~  199 (599)
T 1w6s_A          131 --GNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (599)
T ss_dssp             --SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             --CEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence              578999998875  8754221111  1112335678988875322111122378999988764  8654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=95.25  E-value=1.5  Score=38.96  Aligned_cols=174  Identities=9%  Similarity=0.009  Sum_probs=89.9

Q ss_pred             eEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecC--CCCCcceee
Q 045821           84 CCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAA--PMSTARCYF  161 (352)
Q Consensus        84 ~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~--~~~~~r~~~  161 (352)
                      .++.+++  .......+.....  ....+.++...++.||+...      ....++++++....-..+.  .+..|   .
T Consensus       139 ~I~r~~~--~g~~~~~~~~~~~--~~p~glavd~~~g~lY~~d~------~~~~I~~~~~dg~~~~~l~~~~l~~P---~  205 (386)
T 3v65_B          139 RILRANL--NGSNVEEVVSTGL--ESPGGLAVDWVHDKLYWTDS------GTSRIEVANLDGAHRKVLLWQSLEKP---R  205 (386)
T ss_dssp             EEEEEET--TSCCEEEEECSSC--SCCCCEEEETTTTEEEEEET------TTTEEEECBTTSCSCEEEECSSCSCE---E
T ss_pred             cEEEEec--CCCCcEEEEeCCC--CCccEEEEEeCCCeEEEEcC------CCCeEEEEeCCCCceEEeecCCCCCC---c
Confidence            4556666  5554444432210  11122222224788998853      2356788887654333222  22222   2


Q ss_pred             eeEEE--CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEE--ECCEEEEEccCCCCCCceEEEEEeCCCC
Q 045821          162 PCGVL--NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFV--MDGKIYIRCSASAATSHVCALVYEPSTD  237 (352)
Q Consensus       162 ~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~--~~g~iyv~GG~~~~~~~~~i~~yd~~~~  237 (352)
                      .+++-  ++.||+..... ...++++++....-+.+..... ..-...++  .+++||+.-..     ...|+++|....
T Consensus       206 giavdp~~g~ly~td~~~-~~~I~r~~~dG~~~~~~~~~~~-~~PnGlavd~~~~~lY~aD~~-----~~~I~~~d~dG~  278 (386)
T 3v65_B          206 AIALHPMEGTIYWTDWGN-TPRIEASSMDGSGRRIIADTHL-FWPNGLTIDYAGRRMYWVDAK-----HHVIERANLDGS  278 (386)
T ss_dssp             EEEEETTTTEEEEEECSS-SCEEEEEETTSCSCEEEECSSC-SCEEEEEEEGGGTEEEEEETT-----TTEEEEECTTSC
T ss_pred             EEEEEcCCCeEEEeccCC-CCEEEEEeCCCCCcEEEEECCC-CCeeeEEEeCCCCEEEEEECC-----CCEEEEEeCCCC
Confidence            23333  67899875422 1678999987554333321111 11122333  37899998422     237899987643


Q ss_pred             ceee-cCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCC
Q 045821          238 SWLH-ADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESR  280 (352)
Q Consensus       238 ~W~~-~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~  280 (352)
                      .-.. +......+  ...++.++.||+..-..+ .|.++|..++
T Consensus       279 ~~~~~~~~~~~~P--~giav~~~~ly~td~~~~-~V~~~~~~~G  319 (386)
T 3v65_B          279 HRKAVISQGLPHP--FAITVFEDSLYWTDWHTK-SINSANKFTG  319 (386)
T ss_dssp             SCEEEECSSCSSE--EEEEEETTEEEEEETTTT-EEEEEETTTC
T ss_pred             eeEEEEECCCCCc--eEEEEECCEEEEeeCCCC-eEEEEECCCC
Confidence            2222 22211111  122347889999875444 8999995443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.11  E-value=2.7  Score=41.01  Aligned_cols=178  Identities=8%  Similarity=0.060  Sum_probs=95.5

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecC-
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTE-  197 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~-  197 (352)
                      ++.|++..        ...+.+||+.++++....... ...-.+...-++.|++...    ..+.+||+.+++++.+.. 
T Consensus        73 ~g~lWigT--------~~Gl~~yd~~~~~f~~~~~~~-~~~i~~i~~~~g~lWigt~----~Gl~~~~~~~~~~~~~~~~  139 (758)
T 3ott_A           73 NTYLYMGT--------DNGILVYNYRADRYEQPETDF-PTDVRTMALQGDTLWLGAL----NGLYTYQLQSRKLTSFDTR  139 (758)
T ss_dssp             TTEEEEEE--------TTEEEEEETTTTEECCCSCCC-CSCEEEEEEETTEEEEEET----TEEEEEETTTCCEEEECHH
T ss_pred             CCcEEEEe--------CCCeEEEeCCCCEEECcccCC-CceEEEEEecCCcEEEEcC----CcceeEeCCCCeEEEeccC
Confidence            56777753        145789999998876521111 1111122334788888654    468999999998877621 


Q ss_pred             ---CCCcccceeEEEE-CCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCC-c--EEE-E-C-CEEEEEecC
Q 045821          198 ---PNIFTEIEDSFVM-DGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRG-P--AVV-V-D-DALYVLDQS  267 (352)
Q Consensus       198 ---~~~~~~~~~~~~~-~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~-~--~~~-~-~-~~l~~~gg~  267 (352)
                         ++. ......+.- +|.|++.. .      ..+.+||+.++++..+..+....... .  .+. . + +.|++ |-.
T Consensus       140 ~~~l~~-~~i~~i~~d~~g~lWigt-~------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWi-gt~  210 (758)
T 3ott_A          140 RNGLPN-NTIYSIIRTKDNQIYVGT-Y------NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWI-GTE  210 (758)
T ss_dssp             HHCCSC-SCEEEEEECTTCCEEEEE-T------TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEE-EEE
T ss_pred             CCCcCC-CeEEEEEEcCCCCEEEEe-C------CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEE-EEC
Confidence               111 111112222 67888842 1      14889999988887654321111111 1  222 2 2 34665 332


Q ss_pred             CCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEe-CCEEEEEcCCceEEEEEcCCcc
Q 045821          268 SGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAI-GKTIFVIGKGCSAVVIDVGNIG  324 (352)
Q Consensus       268 ~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~i~v~gG~~~~~~~d~~~~~  324 (352)
                       + .+++||+.++++.....++..   ...+++.. ++.|++-. .....+||.++..
T Consensus       211 -~-Gl~~~~~~~~~~~~~~~l~~~---~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~  262 (758)
T 3ott_A          211 -G-YLFQYFPSTGQIKQTEAFHNN---SIKSLALDGNGDLLAGT-DNGLYVYHNDTTP  262 (758)
T ss_dssp             -E-EEEEEETTTTEEEEEEEEEEE---EEEEEEECTTCCEEEEE-TTEEEEECCTTSC
T ss_pred             -C-CCeEEcCCCCeEEeccCCCCC---eEEEEEEcCCCCEEEEe-CCceeEEecCCCc
Confidence             2 699999999988765433221   11122222 44555543 2345556655543

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=95.10  E-value=1.5  Score=38.99  Aligned_cols=183  Identities=14%  Similarity=0.116  Sum_probs=97.7

Q ss_pred             eEEEEECCC--CeeEecCCCCCcceeeeeEEE---CCEEEEEeCCCCC-CceEEEeCCCCcEEEecCCC---Ccc-----
Q 045821          137 EVYCYDASM--NTWTDAAPMSTARCYFPCGVL---NQKIYCIGGLGDT-HSWDVYDPRTNNWKLHTEPN---IFT-----  202 (352)
Q Consensus       137 ~~~~~d~~t--~~W~~~~~~~~~r~~~~~~~~---~~~iyv~gG~~~~-~~v~~yd~~t~~W~~~~~~~---~~~-----  202 (352)
                      -+++++...  .+|..+........-++++..   ++.||+.+..... ..+++.+....+|+.+....   ...     
T Consensus        32 Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~  111 (394)
T 3b7f_A           32 GAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETG  111 (394)
T ss_dssp             EEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----C
T ss_pred             ceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCccccccc
Confidence            367777654  689876421222223334433   4678887642111 25777777788999886321   111     


Q ss_pred             ----cceeEEEE----CCEEEEEccCCCCCCceEEEEEeCCCCceeecCCC---CC-------------CCCCCcEEEE-
Q 045821          203 ----EIEDSFVM----DGKIYIRCSASAATSHVCALVYEPSTDSWLHADAN---MA-------------SGWRGPAVVV-  257 (352)
Q Consensus       203 ----~~~~~~~~----~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~---~~-------------~~~~~~~~~~-  257 (352)
                          ...+.++.    .+.||+.+..      ..+++.+....+|+.+...   +.             .......+.+ 
T Consensus       112 ~~~~~i~~l~~~~~~~~~~l~~g~~~------ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d  185 (394)
T 3b7f_A          112 RVVDHVFWLTPGHASEPGTWYAGTSP------QGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVD  185 (394)
T ss_dssp             CCCCEEEEEEECCTTSTTCEEEEEET------TEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEEC
T ss_pred             ccccceeEEEeCCCCCCCEEEEEecC------CcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEEC
Confidence                11112222    5788886421      2588888888899987421   10             0001112333 


Q ss_pred             ---CCEEEEEecCCCCeEEEEeCCCCceEEccCC------CCCc---CCCCceEEEe---CCEEEEEcCCceEEEEEcCC
Q 045821          258 ---DDALYVLDQSSGTKLMMWQKESREWSPVGRL------STLL---TRPPCKLVAI---GKTIFVIGKGCSAVVIDVGN  322 (352)
Q Consensus       258 ---~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~------~~~~---~~~~~~~~~~---~~~i~v~gG~~~~~~~d~~~  322 (352)
                         .+.||+.....  .+++.+....+|+.+...      |...   ......++..   .+.||+-. ...++..+-..
T Consensus       186 ~~~~~~l~vg~~~g--gl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~-~~gl~~s~D~G  262 (394)
T 3b7f_A          186 PRDPKHLYIGMSSG--GVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN-HCGIYRMDRRE  262 (394)
T ss_dssp             TTCTTCEEEEEETB--EEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE-TTEEEEEETTT
T ss_pred             CCCCCEEEEEECCC--CEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc-CCeEEEeCCCC
Confidence               35677654332  588888889999988532      1100   0112333332   15677643 34566666667


Q ss_pred             cccccc
Q 045821          323 IGNIGG  328 (352)
Q Consensus       323 ~~w~~~  328 (352)
                      .+|.+.
T Consensus       263 ~tW~~~  268 (394)
T 3b7f_A          263 GVWKRI  268 (394)
T ss_dssp             TEEECG
T ss_pred             CcceEC
Confidence            778653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=95.07  E-value=0.026  Score=50.31  Aligned_cols=143  Identities=13%  Similarity=0.108  Sum_probs=58.8

Q ss_pred             EEECCEEEEEeCCCCCCCCCCeEEEEECCCCe--eEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCC--c
Q 045821          116 EVLGKNAYLLGGCGWSEDATSEVYCYDASMNT--WTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTN--N  191 (352)
Q Consensus       116 ~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~--~  191 (352)
                      ++.++.||+.+.       ...++.+|..+++  |+.-.  .  ......+..++.+|+.++.+  ..+.++|..++  .
T Consensus         6 ~v~~~~v~~gs~-------dg~v~a~d~~tG~~~W~~~~--~--~~~s~p~~~~g~~~v~~s~d--g~l~a~d~~tG~~~   72 (369)
T 2hz6_A            6 TLPETLLFVSTL-------DGSLHAVSKRTGSIKWTLKE--D--PVLQVPTHVEEPAFLPDPND--GSLYTLGSKNNEGL   72 (369)
T ss_dssp             --CTTEEEEEET-------TSEEEEEETTTCCEEEEEEC--C--CSCCCC-----CCEEECTTT--CCEEEC-----CCS
T ss_pred             eeeCCEEEEEcC-------CCEEEEEECCCCCEEEEecC--C--CceecceEcCCCEEEEeCCC--CEEEEEECCCCcee
Confidence            334667776543       2468999988875  76543  1  11123344567788876544  67899998765  4


Q ss_pred             EEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCC--ceeecCCCCCCCCCCcEEEECCEEEEEecCCC
Q 045821          192 WKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTD--SWLHADANMASGWRGPAVVVDDALYVLDQSSG  269 (352)
Q Consensus       192 W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~  269 (352)
                      |+.-...+.......+...++.||+ |+..     ..+..+|..++  .|+.-.... .    ..+..++.+|+ ++..+
T Consensus        73 w~~~~~~~~~~~~sp~~~~~~~v~~-g~~d-----g~v~a~D~~tG~~~w~~~~~~~-~----~~~p~~~~v~~-~~~dg  140 (369)
T 2hz6_A           73 TKLPFTIPELVQASPCRSSDGILYM-GKKQ-----DIWYVIDLLTGEKQQTLSSAFA-D----SLSPSTSLLYL-GRTEY  140 (369)
T ss_dssp             EECSCCHHHHHTTCSCC-----CCC-CEEE-----EEEEEECCC---------------------------EEE-EEEEE
T ss_pred             eeeeccCccccccCceEecCCEEEE-EeCC-----CEEEEEECCCCcEEEEecCCCc-c----cccccCCEEEE-EecCC
Confidence            6532111100011111114556654 2221     25888988765  465432210 0    01113444554 44333


Q ss_pred             CeEEEEeCCCCc--eEE
Q 045821          270 TKLMMWQKESRE--WSP  284 (352)
Q Consensus       270 ~~v~~yd~~~~~--W~~  284 (352)
                       .++.||+.+++  |+.
T Consensus       141 -~v~a~d~~tG~~~W~~  156 (369)
T 2hz6_A          141 -TITMYDTKTRELRWNA  156 (369)
T ss_dssp             -EEECCCSSSSSCCCEE
T ss_pred             -EEEEEECCCCCEEEeE
Confidence             78999988654  764

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=95.04  E-value=1.8  Score=38.63  Aligned_cols=218  Identities=11%  Similarity=0.054  Sum_probs=102.8

Q ss_pred             eEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE--CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceee
Q 045821           84 CCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL--GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYF  161 (352)
Q Consensus        84 ~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~  161 (352)
                      .++++|.  .++....+-.+..   .......+.+  ++..++.|+.+      ..+.+||..+++-.........+  .
T Consensus       126 tV~lWd~--~tg~~~~~~~~~~---~~~~V~sv~fspdg~~lasgs~D------g~v~iWd~~~~~~~~~~~~h~~~--v  192 (420)
T 4gga_A          126 SVYLWSA--SSGDILQLLQMEQ---PGEYISSVAWIKEGNYLAVGTSS------AEVQLWDVQQQKRLRNMTSHSAR--V  192 (420)
T ss_dssp             EEEEEET--TTCCEEEEEECCS---TTCCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECCCSSC--E
T ss_pred             EEEEEEC--CCCCEEEEEEecC---CCCcEEEEEECCCCCEEEEEECC------CeEEEEEcCCCcEEEEEeCCCCc--e
Confidence            4566688  8887766555441   1122222322  55666677643      45888999887643222111222  2


Q ss_pred             eeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCccc--ceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCc-
Q 045821          162 PCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTE--IEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDS-  238 (352)
Q Consensus       162 ~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~--~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~-  238 (352)
                      .+...++.+.+.|+.+  ..+..+|..+....... +.....  ......-+++..+.|+.++     .+..+|..+.+ 
T Consensus       193 ~~~s~~~~~l~sgs~d--~~i~~~d~~~~~~~~~~-~~~h~~~~~~~~~~~~g~~l~s~~~D~-----~v~i~~~~~~~~  264 (420)
T 4gga_A          193 GSLSWNSYILSSGSRS--GHIHHHDVRVAEHHVAT-LSGHSQEVCGLRWAPDGRHLASGGNDN-----LVNVWPSAPGEG  264 (420)
T ss_dssp             EEEEEETTEEEEEETT--SEEEEEETTSSSCEEEE-EECCSSCEEEEEECTTSSEEEEEETTS-----CEEEEESSCCSS
T ss_pred             EEEeeCCCEEEEEeCC--CceeEeeecccceeeEE-ecccccceeeeeecCCCCeeeeeeccc-----cceEEeeccccc
Confidence            2334466677777655  56777887765432211 111111  1111222556666655442     35566665433 


Q ss_pred             -eeecCCCCCCCCCCcEEE---ECCEEEE-EecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEcCC-
Q 045821          239 -WLHADANMASGWRGPAVV---VDDALYV-LDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKG-  312 (352)
Q Consensus       239 -W~~~~~~~~~~~~~~~~~---~~~~l~~-~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~-  312 (352)
                       +..+.........-.++.   .+..++. .+|.....|.+||..++.-...-.....  .........++.+++.+|. 
T Consensus       265 ~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~--v~~~~~~~~~~~lv~~sg~~  342 (420)
T 4gga_A          265 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ--VCSILWSPHYKELISGHGFA  342 (420)
T ss_dssp             CSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSC--EEEEEEETTTTEEEEEECTT
T ss_pred             cceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccc--eeeeeecCCCCeEEEEEecC
Confidence             111111011110111111   1344444 4554445899999988765433222110  1111122234556655553 


Q ss_pred             -ceEEEEEcCCcc
Q 045821          313 -CSAVVIDVGNIG  324 (352)
Q Consensus       313 -~~~~~~d~~~~~  324 (352)
                       ..+.+||..+..
T Consensus       343 d~~I~iwd~~~~~  355 (420)
T 4gga_A          343 QNQLVIWKYPTMA  355 (420)
T ss_dssp             TCCEEEEETTTCC
T ss_pred             CCEEEEEECCCCc
Confidence             246678876543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=94.93  E-value=2.6  Score=39.97  Aligned_cols=118  Identities=11%  Similarity=0.099  Sum_probs=66.2

Q ss_pred             CCEEEEEEecCCCCceeEEEecC-CCCCCCeeEeccCCCcc-----cCCcceEEEE--ECCE----EEEEeCCCCCCCCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDP-NSTRRSWKMIHELPART-----LRRKGMGFEV--LGKN----AYLLGGCGWSEDAT  135 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~-~~~~~~w~~~~~~~~~~-----~~~~~~~~~~--~~~~----iyv~GG~~~~~~~~  135 (352)
                      ++.||+....    .-.++.+|. ..-...|+.-.......     +.....+.++  .++.    ||+...       .
T Consensus        62 ~g~vyv~~~~----~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~-------d  130 (599)
T 1w6s_A           62 DGKMYIHTSF----PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL-------D  130 (599)
T ss_dssp             TTEEEEECST----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-------T
T ss_pred             CCEEEEEeCC----CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC-------C
Confidence            8888887431    124566676 44566677654332100     0011122344  5666    877532       3


Q ss_pred             CeEEEEECCCCe--eEecCCCCCc--ceeeeeEEECCEEEEEeCCCC---CCceEEEeCCCCc--EEEec
Q 045821          136 SEVYCYDASMNT--WTDAAPMSTA--RCYFPCGVLNQKIYCIGGLGD---THSWDVYDPRTNN--WKLHT  196 (352)
Q Consensus       136 ~~~~~~d~~t~~--W~~~~~~~~~--r~~~~~~~~~~~iyv~gG~~~---~~~v~~yd~~t~~--W~~~~  196 (352)
                      ..++.+|..|++  |+.-..-...  ....+.++.++.||+-.+...   ...+..||..|.+  |+.-.
T Consensus       131 g~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~  200 (599)
T 1w6s_A          131 GNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (599)
T ss_dssp             SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence            578999998886  8743221111  223345567898887543111   1678999999875  87654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=94.90  E-value=0.83  Score=40.10  Aligned_cols=193  Identities=10%  Similarity=0.035  Sum_probs=94.0

Q ss_pred             eeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceee
Q 045821           83 VCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYF  161 (352)
Q Consensus        83 ~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~  161 (352)
                      ..++.+|.  .++.-..+....    .......... +++.+++............++.+|..+.....+..........
T Consensus       168 ~~l~~~d~--~~g~~~~l~~~~----~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~  241 (388)
T 3pe7_A          168 CRLMRVDL--KTGESTVILQEN----QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCT  241 (388)
T ss_dssp             EEEEEEET--TTCCEEEEEEES----SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEE
T ss_pred             ceEEEEEC--CCCceEEeecCC----ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccc
Confidence            45778888  777766665432    1122223333 4443333322221123568999999887766665433211111


Q ss_pred             eeEEE-CCE-EEEEeCCCCCC--ceEEEeCCCCcEEEecCCCCcc-----cceeEEEECCE-EEEEccCC----CCCCce
Q 045821          162 PCGVL-NQK-IYCIGGLGDTH--SWDVYDPRTNNWKLHTEPNIFT-----EIEDSFVMDGK-IYIRCSAS----AATSHV  227 (352)
Q Consensus       162 ~~~~~-~~~-iyv~gG~~~~~--~v~~yd~~t~~W~~~~~~~~~~-----~~~~~~~~~g~-iyv~GG~~----~~~~~~  227 (352)
                      ..+.. +++ |+.........  .++++|+.+++-+.+...+...     .......-+|+ |++. ...    ......
T Consensus       242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~-~~~~~~~~~~~~~  320 (388)
T 3pe7_A          242 HEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVD-VQDDSGYKIENDP  320 (388)
T ss_dssp             EEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------------CCCC
T ss_pred             cceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeE-eeeccccccCCCC
Confidence            22222 454 54433222222  4999999998876664333200     00112333443 3322 110    012223


Q ss_pred             EEEEEeCCCCceeecCCCCCC----------CCCCcEEEECC-EEEEEecCCC-CeEEEEeCCCCce
Q 045821          228 CALVYEPSTDSWLHADANMAS----------GWRGPAVVVDD-ALYVLDQSSG-TKLMMWQKESREW  282 (352)
Q Consensus       228 ~i~~yd~~~~~W~~~~~~~~~----------~~~~~~~~~~~-~l~~~gg~~~-~~v~~yd~~~~~W  282 (352)
                      .++.+|+.+++-..+......          .....+..-++ .|++.....+ ..++.+|.....|
T Consensus       321 ~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~~~~  387 (388)
T 3pe7_A          321 FLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPESVW  387 (388)
T ss_dssp             EEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCGGGG
T ss_pred             EEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECChhcc
Confidence            688999988877666432210          11222344455 4555544333 5789989887666

>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1

Probab=94.90  E-value=1.1  Score=35.63  Aligned_cols=147  Identities=7%  Similarity=0.071  Sum_probs=80.3

Q ss_pred             eeEEECCEEEEEeCCCCCCceEEEeCCCC--cEE--EecC-CCC-cccceeEEEE--CCEEEEEccCCCCCCceEEEEEe
Q 045821          162 PCGVLNQKIYCIGGLGDTHSWDVYDPRTN--NWK--LHTE-PNI-FTEIEDSFVM--DGKIYIRCSASAATSHVCALVYE  233 (352)
Q Consensus       162 ~~~~~~~~iyv~gG~~~~~~v~~yd~~t~--~W~--~~~~-~~~-~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd  233 (352)
                      +++.+++++|++-|    ..+++++....  ...  .|.. .+. +...-++...  ++++|++-|..       .|+|+
T Consensus        11 Ai~~~~g~~yfFkg----~~~Wr~~~~~~~~~~~p~~Is~~w~glP~~IDAa~~~~~~~~~yfFkG~~-------yw~~~   79 (195)
T 1itv_A           11 AIAEIGNQLYLFKD----GKYWRFSEGRGSRPQGPFLIADKWPALPRKLDSVFEEPLSKKLFFFSGRQ-------VWVYT   79 (195)
T ss_dssp             EEEEETTEEEEEET----TEEEEECCSSSCCCEEEEEHHHHCTTSCSSCSEEEECTTTCCEEEEETTE-------EEEEE
T ss_pred             EEEEeCCEEEEEEC----CEEEEEECCccccCCCcEEhhhccCCCCCCccEEEEECCCCeEEEEeCCE-------EEEEc
Confidence            45567999999999    77899987652  222  1211 111 1122233333  68899996544       78887


Q ss_pred             CCCCce-eecCC-CCCC-CCCCcEEE--ECCEEEEEecCCCCeEEEEeCCCCceEE-----cc-CCCCCcCCCCceEEEe
Q 045821          234 PSTDSW-LHADA-NMAS-GWRGPAVV--VDDALYVLDQSSGTKLMMWQKESREWSP-----VG-RLSTLLTRPPCKLVAI  302 (352)
Q Consensus       234 ~~~~~W-~~~~~-~~~~-~~~~~~~~--~~~~l~~~gg~~~~~v~~yd~~~~~W~~-----~~-~~~~~~~~~~~~~~~~  302 (352)
                      ..+..- +.+.. ..+. ...--++.  .++++|++-|.   ..++||..+++-..     +. ..+. .+...-++...
T Consensus        80 ~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg~---~ywr~d~~~~~~~~gyPr~i~~~w~G-vp~~idaa~~~  155 (195)
T 1itv_A           80 GASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGR---RLWRFDVKAQMVDPRSASEVDRMFPG-VPLDTHDVFQF  155 (195)
T ss_dssp             TTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETT---EEEEEETTTTEECGGGCEEHHHHSTT-SCSSCSEEEEE
T ss_pred             CCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeCC---EEEEEeCCcccccCCCccChhhcCCC-CCCCCCEEEEe
Confidence            542111 01111 0111 01112332  36899999875   89999988754221     11 1111 11222344455


Q ss_pred             CCEEEEEcCCceEEEEEcCCcc
Q 045821          303 GKTIFVIGKGCSAVVIDVGNIG  324 (352)
Q Consensus       303 ~~~i~v~gG~~~~~~~d~~~~~  324 (352)
                      ++.+|.+-|. ..+-||..+..
T Consensus       156 ~g~~Yffkg~-~y~~~~~~~~~  176 (195)
T 1itv_A          156 REKAYFCQDR-FYWRVSSRSEL  176 (195)
T ss_dssp             TTEEEEEETT-EEEEEECCTTC
T ss_pred             CCeEEEEeCC-EEEEEECCccE
Confidence            7999999876 46668877654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=94.84  E-value=1.7  Score=37.30  Aligned_cols=198  Identities=11%  Similarity=-0.032  Sum_probs=98.7

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE--CCEEEEEeCCCCC-----------CCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL--GKNAYLLGGCGWS-----------EDA  134 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~-----------~~~  134 (352)
                      ++.||+....   .  .++.+|+  .++..+.+...........-..++.-  ++.+|+.......           ...
T Consensus        91 ~g~l~v~d~~---~--~i~~~d~--~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~  163 (322)
T 2fp8_A           91 NNQLYIVDCY---Y--HLSVVGS--EGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDK  163 (322)
T ss_dssp             TTEEEEEETT---T--EEEEECT--TCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCC
T ss_pred             CCcEEEEECC---C--CEEEEeC--CCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCC
Confidence            5678876322   1  2677888  76655555322110001111223332  5678887432100           012


Q ss_pred             CCeEEEEECCCCeeEecCC-CCCcceeeeeEEE-CC-EEEEEeCCCCCCceEEEeCCCC---cEEEecCCCCcccceeEE
Q 045821          135 TSEVYCYDASMNTWTDAAP-MSTARCYFPCGVL-NQ-KIYCIGGLGDTHSWDVYDPRTN---NWKLHTEPNIFTEIEDSF  208 (352)
Q Consensus       135 ~~~~~~~d~~t~~W~~~~~-~~~~r~~~~~~~~-~~-~iyv~gG~~~~~~v~~yd~~t~---~W~~~~~~~~~~~~~~~~  208 (352)
                      ...+++||+.+++...+.. +..|   ..++.- ++ .+|+.-...  ..+.+|+..+.   ..+.+..++. .. ..++
T Consensus       164 ~g~v~~~d~~~~~~~~~~~~~~~p---~gia~~~dg~~lyv~d~~~--~~I~~~~~~~~~~~~~~~~~~~~g-P~-gi~~  236 (322)
T 2fp8_A          164 TGRLIKYDPSTKETTLLLKELHVP---GGAEVSADSSFVLVAEFLS--HQIVKYWLEGPKKGTAEVLVKIPN-PG-NIKR  236 (322)
T ss_dssp             CEEEEEEETTTTEEEEEEEEESCC---CEEEECTTSSEEEEEEGGG--TEEEEEESSSTTTTCEEEEEECSS-EE-EEEE
T ss_pred             CceEEEEeCCCCEEEEeccCCccC---cceEECCCCCEEEEEeCCC--CeEEEEECCCCcCCccceEEeCCC-CC-CeEE
Confidence            3579999998887654321 1111   122332 33 588874322  67899998752   4444332222 11 1122


Q ss_pred             EECCEEEEEccCCCC-----CCceEEEEEeCCCCceeecCCCCCC--CCCCcEEEECCEEEEEecCCCCeEEEEeCCCC
Q 045821          209 VMDGKIYIRCSASAA-----TSHVCALVYEPSTDSWLHADANMAS--GWRGPAVVVDDALYVLDQSSGTKLMMWQKESR  280 (352)
Q Consensus       209 ~~~g~iyv~GG~~~~-----~~~~~i~~yd~~~~~W~~~~~~~~~--~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~  280 (352)
                      --+|+||+.......     .....+.+||+....-..+..+...  ......+..++.||+.+...+ .|.+|++..+
T Consensus       237 d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~-~i~~~~~~~~  314 (322)
T 2fp8_A          237 NADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHG-SVGILVYDKK  314 (322)
T ss_dssp             CTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCS-EEEEEEC---
T ss_pred             CCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCC-ceEEEecccc
Confidence            236789998532100     1124688999875555555332111  111223346889888764443 8999987643

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=94.82  E-value=1.7  Score=42.00  Aligned_cols=56  Identities=13%  Similarity=-0.014  Sum_probs=32.1

Q ss_pred             CeEEEEECCCC---eeEecCCCCCcceeeeeEE-ECCEEEEEeCCCCCCceEEEeCCCCcEEEec
Q 045821          136 SEVYCYDASMN---TWTDAAPMSTARCYFPCGV-LNQKIYCIGGLGDTHSWDVYDPRTNNWKLHT  196 (352)
Q Consensus       136 ~~~~~~d~~t~---~W~~~~~~~~~r~~~~~~~-~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~  196 (352)
                      ..++++|..++   +-..+...... . ...+. -+++..+++..   ..++++|..++....+.
T Consensus       129 ~~i~~~d~~~~~~~~~~~l~~~~~~-~-~~~~~SPDG~~la~~~~---~~i~~~d~~~g~~~~~~  188 (741)
T 2ecf_A          129 GELYLYDLKQEGKAAVRQLTHGEGF-A-TDAKLSPKGGFVSFIRG---RNLWVIDLASGRQMQLT  188 (741)
T ss_dssp             TEEEEEESSSCSTTSCCBCCCSSSC-E-EEEEECTTSSEEEEEET---TEEEEEETTTTEEEECC
T ss_pred             CcEEEEECCCCCcceEEEcccCCcc-c-ccccCCCCCCEEEEEeC---CcEEEEecCCCCEEEec
Confidence            68999999887   54444332211 1 11111 15543333331   57899999988776664

>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1

Probab=94.72  E-value=1.3  Score=35.59  Aligned_cols=147  Identities=6%  Similarity=-0.019  Sum_probs=80.9

Q ss_pred             eeEEECCEEEEEeCCCCCCceEEEeCCCCcEEE--ecC-CCC-cccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCC
Q 045821          162 PCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKL--HTE-PNI-FTEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPS  235 (352)
Q Consensus       162 ~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~--~~~-~~~-~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~  235 (352)
                      +++.+++.+|++-|    ..+++++.....+..  |.. .+. +...-++...  ++++|++-|..       +|+|+..
T Consensus        28 Ai~~~~g~~y~Fkg----~~~wr~~~~~~~~~p~~I~~~wp~Lp~~iDAa~~~~~~~~iyfFkG~~-------~w~~~~~   96 (207)
T 1pex_A           28 AITSLRGETMIFKD----RFFWRLHPQQVDAELFLTKSFWPELPNRIDAAYEHPSHDLIFIFRGRK-------FWALNGY   96 (207)
T ss_dssp             EEEEETTEEEEEET----TEEEEECSSSSCCEEEEHHHHCTTSCSSCCEEEEETTTTEEEEEETTE-------EEEESTT
T ss_pred             EEEeCCCcEEEEEC----CEEEEEeCCCcCCCceehhHhccCCCCCccEEEEeccCCcEEEEccCE-------EEEEeCC
Confidence            45557999999998    678888876544322  211 111 1122234444  58999996544       7888643


Q ss_pred             CCce---eecCCC-CCCC--CCCcEEEE--CCEEEEEecCCCCeEEEEeCCCCceEE-----cc-CCCCCcCCCCceEEE
Q 045821          236 TDSW---LHADAN-MASG--WRGPAVVV--DDALYVLDQSSGTKLMMWQKESREWSP-----VG-RLSTLLTRPPCKLVA  301 (352)
Q Consensus       236 ~~~W---~~~~~~-~~~~--~~~~~~~~--~~~l~~~gg~~~~~v~~yd~~~~~W~~-----~~-~~~~~~~~~~~~~~~  301 (352)
                      +-.-   ..+... .+..  .--+++..  ++++|++-|.   ..|+||..+++-..     +. ..+. .+...-+++.
T Consensus        97 ~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG~---~ywr~d~~~~~~d~gyPr~i~~~~~G-ip~~iDaAf~  172 (207)
T 1pex_A           97 DILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGN---QVWRYDDTNHIMDKDYPRLIEEDFPG-IGDKVDAVYE  172 (207)
T ss_dssp             CCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETT---EEEEEETTTTEECSSCCCBHHHHSTT-SCSCCSEEEE
T ss_pred             eeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeCC---EEEEEeCcCccccCCCCccHHHcCCC-CCCCccEEEE
Confidence            2111   112110 1110  11123332  4899999886   89999987654221     11 0111 1122234445


Q ss_pred             eCCEEEEEcCCceEEEEEcCCcc
Q 045821          302 IGKTIFVIGKGCSAVVIDVGNIG  324 (352)
Q Consensus       302 ~~~~i~v~gG~~~~~~~d~~~~~  324 (352)
                      .++++|+|-|. ..+-||..+.+
T Consensus       173 ~~g~~YfFkg~-~y~rf~~~~~~  194 (207)
T 1pex_A          173 KNGYIYFFNGP-IQFEYSIWSNR  194 (207)
T ss_dssp             ETTEEEEEETT-EEEEEETTTTE
T ss_pred             cCCcEEEEECC-EEEEEeCCccE
Confidence            69999999876 56678887654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=94.67  E-value=0.93  Score=38.56  Aligned_cols=190  Identities=6%  Similarity=0.047  Sum_probs=90.8

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCC--eeEecCCCCCcceee-eeEEE---CCEEEEEeCCCCCCceEEEeCCCC--
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMN--TWTDAAPMSTARCYF-PCGVL---NQKIYCIGGLGDTHSWDVYDPRTN--  190 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~--~W~~~~~~~~~r~~~-~~~~~---~~~iyv~gG~~~~~~v~~yd~~t~--  190 (352)
                      ++.+++.|+.      ...+.+||..++  .+..+..+......- +++..   ++.+++.|+.+  ..+.+||..+.  
T Consensus        22 ~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d--g~v~vwd~~~~~~   93 (351)
T 3f3f_A           22 YGRHVATCSS------DQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD--KTVKLWEEDPDQE   93 (351)
T ss_dssp             SSSEEEEEET------TSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT--SCEEEEEECTTSC
T ss_pred             CCCEEEEeeC------CCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC--CeEEEEecCCCcc
Confidence            4445555553      245677777644  233332221111111 22222   36677777765  57888888764  


Q ss_pred             -----cEEEecCCCCcccceeEEEE--C--CEEEEEccCCCCCCceEEEEEeCCCCc----eeec------CCCCCCCCC
Q 045821          191 -----NWKLHTEPNIFTEIEDSFVM--D--GKIYIRCSASAATSHVCALVYEPSTDS----WLHA------DANMASGWR  251 (352)
Q Consensus       191 -----~W~~~~~~~~~~~~~~~~~~--~--g~iyv~GG~~~~~~~~~i~~yd~~~~~----W~~~------~~~~~~~~~  251 (352)
                           .|+.+............+.+  +  +.+++.|+.++     .+..||..+.+    |...      ...+.....
T Consensus        94 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (351)
T 3f3f_A           94 ECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDG-----ILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQ  168 (351)
T ss_dssp             TTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTC-----EEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSC
T ss_pred             cccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCC-----cEEEecCCChHHhccccccccccccccccCCccc
Confidence                 33433322221111122222  3  66666665442     57788876543    2210      000111111


Q ss_pred             Cc-EEEE-----CCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEE-eCC----EEEEEcCCce-EEEEE
Q 045821          252 GP-AVVV-----DDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVA-IGK----TIFVIGKGCS-AVVID  319 (352)
Q Consensus       252 ~~-~~~~-----~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~~----~i~v~gG~~~-~~~~d  319 (352)
                      .. .+..     ++.++++++..+ .+..++...+....+..+... .....++.. .++    .+++.|+.+. +.+||
T Consensus       169 ~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd  246 (351)
T 3f3f_A          169 SDFCLSWCPSRFSPEKLAVSALEQ-AIIYQRGKDGKLHVAAKLPGH-KSLIRSISWAPSIGRWYQLIATGCKDGRIRIFK  246 (351)
T ss_dssp             CCEEEEECCCSSSCCEEEEEETTE-EEEEEECTTSCEEEEEECCCC-CSCEEEEEECCCSSCSSEEEEEEETTSCEEEEE
T ss_pred             ceeEEEeccCCCCCcEEEEecCCC-cEEEEccCCCceeeeeecCCC-CcceeEEEECCCCCCcceEEEEEcCCCeEEEEe
Confidence            11 1222     366777777665 566667667766555444321 111223332 233    6777776654 66788


Q ss_pred             cCCc
Q 045821          320 VGNI  323 (352)
Q Consensus       320 ~~~~  323 (352)
                      +...
T Consensus       247 ~~~~  250 (351)
T 3f3f_A          247 ITEK  250 (351)
T ss_dssp             EEEC
T ss_pred             CCCC
Confidence            8764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=94.62  E-value=2.1  Score=37.48  Aligned_cols=148  Identities=5%  Similarity=-0.095  Sum_probs=74.6

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCC--CcceeeeeEEECCEEEEEeCCCCC--CceEEEeCCCCcEEE
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMS--TARCYFPCGVLNQKIYCIGGLGDT--HSWDVYDPRTNNWKL  194 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~--~~r~~~~~~~~~~~iyv~gG~~~~--~~v~~yd~~t~~W~~  194 (352)
                      ++++++.++       .+.+.+++..+++........  ..........-++..++.++.+..  ..+..+|........
T Consensus       187 dg~~l~s~s-------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~  259 (365)
T 4h5i_A          187 DGKVVAYIT-------GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSV  259 (365)
T ss_dssp             TSSEEEEEC-------SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEE
T ss_pred             CCceEEecc-------ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecc
Confidence            555555554       234677777776543322221  111112222237777777765543  345667766655433


Q ss_pred             ecC--CCCcccc--eeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceee-cCCCCCCCCCCcEEEECCEEEEEecCCC
Q 045821          195 HTE--PNIFTEI--EDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLH-ADANMASGWRGPAVVVDDALYVLDQSSG  269 (352)
Q Consensus       195 ~~~--~~~~~~~--~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~l~~~gg~~~  269 (352)
                      ...  .......  ..++.-+|++.+.|+.++     .|..||..+.+-.. +.......-...++.-++++++.|+.++
T Consensus       260 ~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~-----~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~  334 (365)
T 4h5i_A          260 LRSKQVTNRFKGITSMDVDMKGELAVLASNDN-----SIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAAN  334 (365)
T ss_dssp             EEEEEEESSCSCEEEEEECTTSCEEEEEETTS-----CEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTS
T ss_pred             eeeeeecCCCCCeEeEEECCCCCceEEEcCCC-----EEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCC
Confidence            221  1111111  112223788888876653     48888987765322 2111111101111223788888787766


Q ss_pred             CeEEEEeCCC
Q 045821          270 TKLMMWQKES  279 (352)
Q Consensus       270 ~~v~~yd~~~  279 (352)
                       .|.+||...
T Consensus       335 -tvrvw~ip~  343 (365)
T 4h5i_A          335 -TIHIIKLPL  343 (365)
T ss_dssp             -EEEEEECCT
T ss_pred             -eEEEEEcCC
Confidence             899998753

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=94.48  E-value=2.1  Score=36.82  Aligned_cols=198  Identities=9%  Similarity=0.050  Sum_probs=102.1

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCC--CeeEeccCCC----cccCCcceEEEEE--CCEEEEEeCCCCCCCCCCeEE
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRR--SWKMIHELPA----RTLRRKGMGFEVL--GKNAYLLGGCGWSEDATSEVY  139 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~--~w~~~~~~~~----~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~  139 (352)
                      ++.||+....    ...+..||+  ...  .-..+.....    ......-..++..  ++.+|+..++     ....+.
T Consensus       101 ~g~l~v~d~~----~~~v~~~~~--~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~-----~~~~I~  169 (329)
T 3fvz_A          101 DGNYWVTDVA----LHQVFKLDP--HSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY-----CNSRIV  169 (329)
T ss_dssp             TSCEEEEETT----TTEEEEECT--TCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS-----SCCEEE
T ss_pred             CCCEEEEECC----CCEEEEEeC--CCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC-----CCCeEE
Confidence            5567776432    235667787  544  3333332110    0001112334443  5789998752     235688


Q ss_pred             EEECCCCeeEecCCCC-------Ccce-eeeeEEE-C-CEEEEEeCCCCCCceEEEeCCCCcEEEecCCC-CcccceeEE
Q 045821          140 CYDASMNTWTDAAPMS-------TARC-YFPCGVL-N-QKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPN-IFTEIEDSF  208 (352)
Q Consensus       140 ~~d~~t~~W~~~~~~~-------~~r~-~~~~~~~-~-~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~-~~~~~~~~~  208 (352)
                      +||+....-..+....       .... ...+++- + +.+||.....  ..+.+||+.+++....-..+ ......+.+
T Consensus       170 ~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~--~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~  247 (329)
T 3fvz_A          170 QFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADREN--GRIQCFKTDTKEFVREIKHASFGRNVFAIS  247 (329)
T ss_dssp             EECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTT--TEEEEEETTTCCEEEEECCTTTTTCEEEEE
T ss_pred             EEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCC--CEEEEEECCCCcEEEEEeccccCCCcceee
Confidence            8986554433332111       1111 2333433 4 8999987654  68999999977664432111 111112233


Q ss_pred             EECCEEEEEccCCC--CCCceEEEEEeCCCCceeec-CCCCCCCCCCcEEE--ECCEEEEEecCCCCeEEEEeCCC
Q 045821          209 VMDGKIYIRCSASA--ATSHVCALVYEPSTDSWLHA-DANMASGWRGPAVV--VDDALYVLDQSSGTKLMMWQKES  279 (352)
Q Consensus       209 ~~~g~iyv~GG~~~--~~~~~~i~~yd~~~~~W~~~-~~~~~~~~~~~~~~--~~~~l~~~gg~~~~~v~~yd~~~  279 (352)
                      ...+.+|...|...  ......+..+|..+++.... ............+.  -+|.||+.....+ .|.+|+++.
T Consensus       248 ~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~-~I~~~~~~~  322 (329)
T 3fvz_A          248 YIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTN-TVWKFTLTE  322 (329)
T ss_dssp             EETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSC-CEEEEEEEE
T ss_pred             ecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCC-EEEEEeCCc
Confidence            34467777655432  11223688899877766543 21111111112233  3678888876555 899988754

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=94.47  E-value=0.81  Score=41.21  Aligned_cols=141  Identities=8%  Similarity=0.044  Sum_probs=67.6

Q ss_pred             EEEEeCCCCCCceEEEeCCCC---cEEEec--CCCCccc-ceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCc-ee
Q 045821          170 IYCIGGLGDTHSWDVYDPRTN---NWKLHT--EPNIFTE-IEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTDS-WL  240 (352)
Q Consensus       170 iyv~gG~~~~~~v~~yd~~t~---~W~~~~--~~~~~~~-~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~-W~  240 (352)
                      +++.|+.+  ..+.+||..+.   .+...+  ....... -..+...  ++.+++.|+..+     .+..||..+.. ..
T Consensus       196 ~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg-----~i~i~d~~~~~~~~  268 (430)
T 2xyi_A          196 YLLSASDD--HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ-----KLMIWDTRNNNTSK  268 (430)
T ss_dssp             EEEEECTT--SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTS-----EEEEEETTCSCSSS
T ss_pred             eEEEEeCC--CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCC-----eEEEEECCCCCCCc
Confidence            66666655  67889998873   222111  0111111 1122222  566777765542     68889987652 11


Q ss_pred             ecCCCCCCCCCCcEEEE--CC-EEEEEecCCCCeEEEEeCCCCc--eEEccCCCCCcCCCCceEEE--eCCEEEEEcCCc
Q 045821          241 HADANMASGWRGPAVVV--DD-ALYVLDQSSGTKLMMWQKESRE--WSPVGRLSTLLTRPPCKLVA--IGKTIFVIGKGC  313 (352)
Q Consensus       241 ~~~~~~~~~~~~~~~~~--~~-~l~~~gg~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~--~~~~i~v~gG~~  313 (352)
                      .+.....+......+.+  ++ .+++.|+.++ .|.+||..+..  -..+....    ....++..  .+..+++.|+.+
T Consensus       269 ~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg-~v~vwd~~~~~~~~~~~~~h~----~~v~~i~~sp~~~~~l~s~~~d  343 (430)
T 2xyi_A          269 PSHTVDAHTAEVNCLSFNPYSEFILATGSADK-TVALWDLRNLKLKLHSFESHK----DEIFQVQWSPHNETILASSGTD  343 (430)
T ss_dssp             CSEEEECCSSCEEEEEECSSCTTEEEEEETTS-EEEEEETTCTTSCSEEEECCS----SCEEEEEECSSCTTEEEEEETT
T ss_pred             ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCC-eEEEEeCCCCCCCeEEeecCC----CCEEEEEECCCCCCEEEEEeCC
Confidence            11100011111112222  33 4788888776 89999988632  11111111    11112222  233566666544


Q ss_pred             -eEEEEEcCC
Q 045821          314 -SAVVIDVGN  322 (352)
Q Consensus       314 -~~~~~d~~~  322 (352)
                       .+.+||+..
T Consensus       344 ~~i~iwd~~~  353 (430)
T 2xyi_A          344 RRLHVWDLSK  353 (430)
T ss_dssp             SCCEEEEGGG
T ss_pred             CcEEEEeCCC
Confidence             566899876

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=94.43  E-value=2.2  Score=36.80  Aligned_cols=151  Identities=6%  Similarity=0.020  Sum_probs=75.1

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecC
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTE  197 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~  197 (352)
                      ++..++.|+.+      ..+.+||..+++-..+........-.+++.. ++.+++.|+.+  ..+.+||..+..-... .
T Consensus       138 ~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d--g~i~iwd~~~~~~~~~-~  208 (343)
T 3lrv_A          138 NTEYFIWADNR------GTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD--GILDVYNLSSPDQASS-R  208 (343)
T ss_dssp             -CCEEEEEETT------CCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT--SCEEEEESSCTTSCCE-E
T ss_pred             CCCEEEEEeCC------CcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC--CEEEEEECCCCCCCcc-E
Confidence            34566666643      4578899888765333222211111122222 67787877765  7899999998753200 1


Q ss_pred             CCCcccc-eeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCcee-ecCCCCCC--CCCCcEEE--ECCEEEEEecCCC
Q 045821          198 PNIFTEI-EDSFVM--DGKIYIRCSASAATSHVCALVYEPSTDSWL-HADANMAS--GWRGPAVV--VDDALYVLDQSSG  269 (352)
Q Consensus       198 ~~~~~~~-~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~-~~~~~~~~--~~~~~~~~--~~~~l~~~gg~~~  269 (352)
                      +...+.. ...+.+  +++..+.|+ ..     .+..||..+.+-. .+......  ......+.  .+++.++.++..+
T Consensus       209 ~~~~h~~~v~~l~fs~~g~~l~s~~-~~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d  282 (343)
T 3lrv_A          209 FPVDEEAKIKEVKFADNGYWMVVEC-DQ-----TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNES  282 (343)
T ss_dssp             CCCCTTSCEEEEEECTTSSEEEEEE-SS-----BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTT
T ss_pred             EeccCCCCEEEEEEeCCCCEEEEEe-CC-----eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCC
Confidence            1111111 122222  666666655 21     5788888765421 12110000  11111222  3566666654422


Q ss_pred             CeEEEEeC--CCCceEE
Q 045821          270 TKLMMWQK--ESREWSP  284 (352)
Q Consensus       270 ~~v~~yd~--~~~~W~~  284 (352)
                      ..+.+|+.  ..+.|..
T Consensus       283 ~~i~v~~~~~~~~~~~~  299 (343)
T 3lrv_A          283 NSLTIYKFDKKTKNWTK  299 (343)
T ss_dssp             TEEEEEEECTTTCSEEE
T ss_pred             CcEEEEEEcccccceEe
Confidence            26766665  5677987

>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}

Probab=94.36  E-value=0.86  Score=37.27  Aligned_cols=139  Identities=9%  Similarity=0.035  Sum_probs=76.0

Q ss_pred             ECCEEEEEeCCCCCCCCCCeEEEEEC---------------CCCeeEecCCCCCcceeeeeEE--ECCEEEEEeCCCCCC
Q 045821          118 LGKNAYLLGGCGWSEDATSEVYCYDA---------------SMNTWTDAAPMSTARCYFPCGV--LNQKIYCIGGLGDTH  180 (352)
Q Consensus       118 ~~~~iyv~GG~~~~~~~~~~~~~~d~---------------~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~gG~~~~~  180 (352)
                      ..+++|+|-|        ..+|+++.               .+..|..++..+.......++.  .++++|++-|    +
T Consensus        12 ~~ge~~fFk~--------~~~wr~~~~~~~~~~~~~~~p~~I~~~Wp~LP~~~f~~~~iDAa~~~~~g~~~fFkg----~   79 (225)
T 3oyo_A           12 SEYEVYFFAK--------NKYVRLHYTPGASSDTILTNLRLISSGFPSLAGTPFAEPGIDCSFHTEASEAYVFSG----N   79 (225)
T ss_dssp             STTEEEEEET--------TEEEEEECCTTCSCCEEEEEEEEHHHHCGGGTTSTTTTTCCSEEEECSTTEEEEEET----T
T ss_pred             CCCEEEEEEC--------CEEEEEecccccccCcccCCceehhhhcccCCCccCCCCCEeEEEEcCCCeEEEEcC----C
Confidence            3788999976        34666661               1222333332111112233333  4799999999    7


Q ss_pred             ceEEEeCCCC----cEEE----ec----CCCCc--c-cceeEEE--ECCEEEEEccCCCCCCceEEEEEeCCCCceeecC
Q 045821          181 SWDVYDPRTN----NWKL----HT----EPNIF--T-EIEDSFV--MDGKIYIRCSASAATSHVCALVYEPSTDSWLHAD  243 (352)
Q Consensus       181 ~v~~yd~~t~----~W~~----~~----~~~~~--~-~~~~~~~--~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~  243 (352)
                      .+++||..++    .-..    |.    .+|..  . ..-++..  .++++|.+-|..       .|+||..+++...-+
T Consensus        80 ~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG~~-------yw~~d~~~~~~~~gP  152 (225)
T 3oyo_A           80 HSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKGNK-------YVRIAYDSKQLVGNI  152 (225)
T ss_dssp             EEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEETTE-------EEEEETTTTEEEEEE
T ss_pred             EEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeCCe-------EEEEECCCCeecCCC
Confidence            8899976432    2111    11    11211  0 1223333  268999996544       899997766544311


Q ss_pred             C-----CCCC-----CCCC-cEEE--ECCEEEEEecCCCCeEEEEeCC
Q 045821          244 A-----NMAS-----GWRG-PAVV--VDDALYVLDQSSGTKLMMWQKE  278 (352)
Q Consensus       244 ~-----~~~~-----~~~~-~~~~--~~~~l~~~gg~~~~~v~~yd~~  278 (352)
                      .     .+..     ...- +++.  .++++|++-|.   ..|+||..
T Consensus       153 k~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG~---~ywr~d~~  197 (225)
T 3oyo_A          153 RNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKGQ---NYVRIDFT  197 (225)
T ss_dssp             EEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEETT---EEEEEECC
T ss_pred             cchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEECC---EEEEEeCC
Confidence            0     0110     1112 2333  37899999886   89999998

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=94.35  E-value=2.1  Score=36.31  Aligned_cols=155  Identities=10%  Similarity=-0.001  Sum_probs=78.8

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCc-c--eeeeeEEE-CCEEEEE----eCCC-----------CC
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTA-R--CYFPCGVL-NQKIYCI----GGLG-----------DT  179 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~-r--~~~~~~~~-~~~iyv~----gG~~-----------~~  179 (352)
                      ++.+|+...      ....+.+||+. ++.+.+...... +  .-..++.- ++.+|+.    |...           ..
T Consensus        96 dG~l~v~~~------~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~  168 (305)
T 3dr2_A           96 QQRLVHCEH------GRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAH  168 (305)
T ss_dssp             TSCEEEEET------TTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSC
T ss_pred             CCCEEEEEC------CCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCC
Confidence            567777642      12468888886 555554332111 1  11123332 6788885    3211           01


Q ss_pred             CceEEEeCCCCcEEEecCCCCcccceeEEE-ECC-EEEEEccCCCCCCceEEEEEeCCCCceee---cCCCCCCCCCCcE
Q 045821          180 HSWDVYDPRTNNWKLHTEPNIFTEIEDSFV-MDG-KIYIRCSASAATSHVCALVYEPSTDSWLH---ADANMASGWRGPA  254 (352)
Q Consensus       180 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~g-~iyv~GG~~~~~~~~~i~~yd~~~~~W~~---~~~~~~~~~~~~~  254 (352)
                      ..+++||+.+++.+.+.  .. ......+. -++ .||+............+++||...+....   +.......-.+..
T Consensus       169 ~~v~~~d~~~g~~~~~~--~~-~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~  245 (305)
T 3dr2_A          169 HSVYRLPPDGSPLQRMA--DL-DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFC  245 (305)
T ss_dssp             EEEEEECSSSCCCEEEE--EE-SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEE
T ss_pred             CeEEEEcCCCCcEEEEe--cC-CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEE
Confidence            56899999888877664  11 11122222 245 48887432111112468888876544221   1111111111222


Q ss_pred             EEECCEEEEEecCCCCeEEEEeCCCCceEEcc
Q 045821          255 VVVDDALYVLDQSSGTKLMMWQKESREWSPVG  286 (352)
Q Consensus       255 ~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~  286 (352)
                      +..+|.||+..+   ..|++||++......+.
T Consensus       246 ~d~~G~lwv~~~---~gv~~~~~~g~~~~~~~  274 (305)
T 3dr2_A          246 VDRGGWLWSSSG---TGVCVFDSDGQLLGHIP  274 (305)
T ss_dssp             ECTTSCEEECCS---SEEEEECTTSCEEEEEE
T ss_pred             ECCCCCEEEecC---CcEEEECCCCCEEEEEE
Confidence            334677776652   26999999876665554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=94.31  E-value=2.5  Score=36.96  Aligned_cols=184  Identities=10%  Similarity=0.020  Sum_probs=97.6

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEE--ECCEEEEEeCCCCCCCCCCeEEEEECCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEV--LGKNAYLLGGCGWSEDATSEVYCYDASM  145 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~t  145 (352)
                      ++.||..-.    ....++.+++  .......+....   . ..-..+++  .++.||+...      ....++++++..
T Consensus        84 ~~~ly~~D~----~~~~I~r~~~--~g~~~~~~~~~~---~-~~p~glavd~~~g~ly~~d~------~~~~I~~~~~dG  147 (349)
T 3v64_C           84 RELVFWSDV----TLDRILRANL--NGSNVEEVVSTG---L-ESPGGLAVDWVHDKLYWTDS------GTSRIEVANLDG  147 (349)
T ss_dssp             TTEEEEEET----TTTEEEEEET--TSCSCEEEECSS---C-SCCCEEEEETTTTEEEEEET------TTTEEEEEETTS
T ss_pred             ccEEEEEec----cCCceEEEec--CCCCceEEEeCC---C-CCccEEEEecCCCeEEEEcC------CCCeEEEEcCCC
Confidence            566776621    2234666777  555544443221   0 11123333  4789998853      245788888876


Q ss_pred             CeeEecC--CCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEE--ECCEEEEEcc
Q 045821          146 NTWTDAA--PMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFV--MDGKIYIRCS  219 (352)
Q Consensus       146 ~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~--~~g~iyv~GG  219 (352)
                      ..-..+.  .+..|+   .+++-  ++.||+..... ...++++++....-+.+.... ...-.+.++  .+++||+.-.
T Consensus       148 ~~~~~l~~~~l~~P~---~iavdp~~g~ly~td~~~-~~~I~r~~~dG~~~~~~~~~~-~~~PnGla~d~~~~~lY~aD~  222 (349)
T 3v64_C          148 AHRKVLLWQSLEKPR---AIALHPMEGTIYWTDWGN-TPRIEASSMDGSGRRIIADTH-LFWPNGLTIDYAGRRMYWVDA  222 (349)
T ss_dssp             CSCEEEECTTCSCEE---EEEEETTTTEEEEEECSS-SCEEEEEETTSCSCEESCCSS-CSCEEEEEEETTTTEEEEEET
T ss_pred             CceEEEEeCCCCCcc---eEEEecCcCeEEEeccCC-CCEEEEEeCCCCCcEEEEECC-CCCcceEEEeCCCCEEEEEEC
Confidence            5433322  222332   23333  68899886432 267899988765433332111 111123333  3789999842


Q ss_pred             CCCCCCceEEEEEeCCCCceeec-CCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCC
Q 045821          220 ASAATSHVCALVYEPSTDSWLHA-DANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESR  280 (352)
Q Consensus       220 ~~~~~~~~~i~~yd~~~~~W~~~-~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~  280 (352)
                      .     ...|+++|.....=..+ ......+  ...++.++.||+..-..+ .|.++|..++
T Consensus       223 ~-----~~~I~~~~~dG~~~~~~~~~~~~~P--~giav~~~~ly~td~~~~-~V~~~~~~~G  276 (349)
T 3v64_C          223 K-----HHVIERANLDGSHRKAVISQGLPHP--FAITVFEDSLYWTDWHTK-SINSANKFTG  276 (349)
T ss_dssp             T-----TTEEEEEETTSCSCEEEECSSCSSE--EEEEEETTEEEEEETTTT-EEEEEETTTC
T ss_pred             C-----CCEEEEEeCCCCceEEEEeCCCCCc--eEEEEECCEEEEecCCCC-eEEEEEccCC
Confidence            2     23788998764332222 2111111  122347899999875544 8999995444

>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}

Probab=94.21  E-value=1  Score=35.92  Aligned_cols=143  Identities=9%  Similarity=0.092  Sum_probs=76.3

Q ss_pred             eeEEECCEEEEEeCCCCCCceEEEeCCCC--c-EEEec----CCCCcccceeEEE-ECCEEEEEccCCCCCCceEEEEEe
Q 045821          162 PCGVLNQKIYCIGGLGDTHSWDVYDPRTN--N-WKLHT----EPNIFTEIEDSFV-MDGKIYIRCSASAATSHVCALVYE  233 (352)
Q Consensus       162 ~~~~~~~~iyv~gG~~~~~~v~~yd~~t~--~-W~~~~----~~~~~~~~~~~~~-~~g~iyv~GG~~~~~~~~~i~~yd  233 (352)
                      +++.+++++|++-|    ..+++++...-  . =+.|.    .+|.  ..-++.. .+|++|.+-|..       .|+|+
T Consensus        10 A~~~~~g~~~fFkg----~~~w~~~~~~~~~gyP~~I~~~w~glP~--~iDAa~~~~~g~~yfFkg~~-------yw~~~   76 (196)
T 3c7x_A           10 TVAMLRGEMFVFKE----RWFWRVRNNQVMDGYPMPIGQFWRGLPA--SINTAYERKDGKFVFFKGDK-------HWVFD   76 (196)
T ss_dssp             EEEEETTEEEEEET----TEEEEEETTEECTTCSEEHHHHSTTCCS--SCCEEEECTTSCEEEEETTE-------EEEEE
T ss_pred             EEEEcCCEEEEEEC----CEEEEEECCccCCCCceEhhHhccCCCC--CccEEEEeCCCcEEEecCCE-------EEEEe
Confidence            34467899999998    77888864320  0 01221    1222  1222322 378899985543       78887


Q ss_pred             CCCCce---eecCCC---CCCCCCCcEEEE--CCEEEEEecCCCCeEEEEeCCCCceEE-----cc---CCCCCcCCCCc
Q 045821          234 PSTDSW---LHADAN---MASGWRGPAVVV--DDALYVLDQSSGTKLMMWQKESREWSP-----VG---RLSTLLTRPPC  297 (352)
Q Consensus       234 ~~~~~W---~~~~~~---~~~~~~~~~~~~--~~~l~~~gg~~~~~v~~yd~~~~~W~~-----~~---~~~~~~~~~~~  297 (352)
                      ..+...   ..+...   .+...--+++..  ++++|++-|.   ..++||..+++-..     +.   .+|.   ....
T Consensus        77 ~~~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG~---~yw~yd~~~~~v~~gyPk~i~~~~gip~---~ida  150 (196)
T 3c7x_A           77 EASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRGN---KYYRFNEELRAVDSEYPKNIKVWEGIPE---SPRG  150 (196)
T ss_dssp             TTEECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEETT---EEEEEETTTTEECTTCSEEGGGSBTCCS---SCSE
T ss_pred             CCcccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEECC---EEEEEeCCcccccCCCCccHHHCCCcCC---Ccce
Confidence            542111   011110   111112223332  6899999876   89999987754321     11   1221   1122


Q ss_pred             eEEEeCC-EEEEEcCCceEEEEEcCCcc
Q 045821          298 KLVAIGK-TIFVIGKGCSAVVIDVGNIG  324 (352)
Q Consensus       298 ~~~~~~~-~i~v~gG~~~~~~~d~~~~~  324 (352)
                      ++...++ ++|++-|. ..+-||..+.+
T Consensus       151 Af~~~~~~~~YfFkg~-~y~r~d~~~~~  177 (196)
T 3c7x_A          151 SFMGSDEVFTYFYKGN-KYWKFNNQKLK  177 (196)
T ss_dssp             EEECTTSSEEEEEETT-EEEEEETTTTE
T ss_pred             eEEecCCCEEEEEECC-EEEEEECCcce
Confidence            3333244 99999875 46668887654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=94.21  E-value=4.2  Score=39.15  Aligned_cols=116  Identities=16%  Similarity=0.231  Sum_probs=67.1

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcc-----cCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEE
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPART-----LRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYD  142 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~-----~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d  142 (352)
                      ++.||+....     -.++.+|..+-...|+.-...+...     +.....+.++.++.||+...       ...++.+|
T Consensus        66 ~g~vyv~~~~-----~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg~l~alD  133 (668)
T 1kv9_A           66 DGVIYTSMSW-----SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------DGRLIALD  133 (668)
T ss_dssp             TTEEEEEEGG-----GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------TSEEEEEE
T ss_pred             CCEEEEECCC-----CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-------CCEEEEEE
Confidence            7888876432     2567778722334576544332100     00112234556888887632       35789999


Q ss_pred             CCCCe--eEecCCCCC--cceeeeeEEECCEEEEEeCCCC---CCceEEEeCCCCc--EEEe
Q 045821          143 ASMNT--WTDAAPMST--ARCYFPCGVLNQKIYCIGGLGD---THSWDVYDPRTNN--WKLH  195 (352)
Q Consensus       143 ~~t~~--W~~~~~~~~--~r~~~~~~~~~~~iyv~gG~~~---~~~v~~yd~~t~~--W~~~  195 (352)
                      ..|++  |+.-..-+.  .....+.++.++.+|+..+...   ...+..||..|++  |+.-
T Consensus       134 ~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          134 AKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             TTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            99886  875432111  1223345667899888543211   1679999999875  8764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=94.11  E-value=2.8  Score=36.82  Aligned_cols=146  Identities=10%  Similarity=0.133  Sum_probs=76.0

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCC-e-eEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEe
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMN-T-WTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLH  195 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~-~-W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~  195 (352)
                      ++.+++.|+.+      ..+.+||.... + -..+.....+ . .+++.. ++..++.|+.+  ..+.+||..+..-...
T Consensus       217 ~~~~l~sgs~D------~~v~~wd~~~~~~~~~~~~~h~~~-v-~~v~~~p~~~~l~s~s~D--~~i~lwd~~~~~~~~~  286 (380)
T 3iz6_a          217 NANMFISGSCD------TTVRLWDLRITSRAVRTYHGHEGD-I-NSVKFFPDGQRFGTGSDD--GTCRLFDMRTGHQLQV  286 (380)
T ss_dssp             SCCEEEEEETT------SCEEEEETTTTCCCCEEECCCSSC-C-CEEEECTTSSEEEEECSS--SCEEEEETTTTEEEEE
T ss_pred             CCCEEEEEECC------CeEEEEECCCCCcceEEECCcCCC-e-EEEEEecCCCeEEEEcCC--CeEEEEECCCCcEEEE
Confidence            55677777653      34778887632 1 1111111110 1 112222 56677777766  6789999988754332


Q ss_pred             cCCCCcc-------cceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceee-cCCCCC-CC--CCCcEEEECCEEEEE
Q 045821          196 TEPNIFT-------EIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLH-ADANMA-SG--WRGPAVVVDDALYVL  264 (352)
Q Consensus       196 ~~~~~~~-------~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~-~~~~~~-~~--~~~~~~~~~~~l~~~  264 (352)
                      -......       ....+..-+|++.+.|+.++     .+..||..+.+-.. +..... +.  ....++..+++.++.
T Consensus       287 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg-----~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s  361 (380)
T 3iz6_a          287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG-----DCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCT  361 (380)
T ss_dssp             ECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTS-----CEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEE
T ss_pred             ecccccccccccCceEEEEECCCCCEEEEEECCC-----CEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEE
Confidence            2111110       11122334777777765443     57888887665432 221111 11  111123347778888


Q ss_pred             ecCCCCeEEEEeCCCC
Q 045821          265 DQSSGTKLMMWQKESR  280 (352)
Q Consensus       265 gg~~~~~v~~yd~~~~  280 (352)
                      |+.++ .+.+||....
T Consensus       362 gs~D~-~i~iW~~~~~  376 (380)
T 3iz6_a          362 GSWDK-NLKIWAFSGH  376 (380)
T ss_dssp             ECTTS-CEEEEECCSS
T ss_pred             eeCCC-CEEEEecCCC
Confidence            88776 8888887653

>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}

Probab=94.07  E-value=1.3  Score=36.22  Aligned_cols=147  Identities=13%  Similarity=0.115  Sum_probs=78.7

Q ss_pred             CCEEEEEeCCCCCCceEEEeC------CCCcEEE--ec----CCCCc----ccceeEEE-ECCEEEEEccCCCCCCceEE
Q 045821          167 NQKIYCIGGLGDTHSWDVYDP------RTNNWKL--HT----EPNIF----TEIEDSFV-MDGKIYIRCSASAATSHVCA  229 (352)
Q Consensus       167 ~~~iyv~gG~~~~~~v~~yd~------~t~~W~~--~~----~~~~~----~~~~~~~~-~~g~iyv~GG~~~~~~~~~i  229 (352)
                      ++.+|++-|    ..+++++.      .......  |.    .+|..    ...-++.. .+|++|++-|..       .
T Consensus        13 ~ge~~fFk~----~~~wr~~~~~~~~~~~~~~~p~~I~~~Wp~LP~~~f~~~~iDAa~~~~~g~~~fFkg~~-------~   81 (225)
T 3oyo_A           13 EYEVYFFAK----NKYVRLHYTPGASSDTILTNLRLISSGFPSLAGTPFAEPGIDCSFHTEASEAYVFSGNH-------S   81 (225)
T ss_dssp             TTEEEEEET----TEEEEEECCTTCSCCEEEEEEEEHHHHCGGGTTSTTTTTCCSEEEECSTTEEEEEETTE-------E
T ss_pred             CCEEEEEEC----CEEEEEecccccccCcccCCceehhhhcccCCCccCCCCCEeEEEEcCCCeEEEEcCCE-------E
Confidence            689999988    67888872      1111111  11    12211    11223333 489999996543       8


Q ss_pred             EEEeCCC----Cc-----------eeecCCCCCCCCCCcEEE--ECCEEEEEecCCCCeEEEEeCCCCceEE----cc-C
Q 045821          230 LVYEPST----DS-----------WLHADANMASGWRGPAVV--VDDALYVLDQSSGTKLMMWQKESREWSP----VG-R  287 (352)
Q Consensus       230 ~~yd~~~----~~-----------W~~~~~~~~~~~~~~~~~--~~~~l~~~gg~~~~~v~~yd~~~~~W~~----~~-~  287 (352)
                      |+||..+    +.           |..++.......--+++.  .++++|++-|.   ..|+||..+++...    +. .
T Consensus        82 W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG~---~yw~~d~~~~~~~~gPk~I~~~  158 (225)
T 3oyo_A           82 AYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKGN---KYVRIAYDSKQLVGNIRNIGDG  158 (225)
T ss_dssp             EEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEETT---EEEEEETTTTEEEEEEEEHHHH
T ss_pred             EEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeCC---eEEEEECCCCeecCCCcchhhc
Confidence            8887532    21           211111000001112223  37899999886   89999987766543    11 1


Q ss_pred             CCCC----cCCCCceEEE--eCCEEEEEcCCceEEEEEcC----Ccccccc
Q 045821          288 LSTL----LTRPPCKLVA--IGKTIFVIGKGCSAVVIDVG----NIGNIGG  328 (352)
Q Consensus       288 ~~~~----~~~~~~~~~~--~~~~i~v~gG~~~~~~~d~~----~~~w~~~  328 (352)
                      .|..    +....-+++.  .++++|+|-|. ..+.||..    ..+...+
T Consensus       159 fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG~-~ywr~d~~~g~~~~~~~~g  208 (225)
T 3oyo_A          159 FPVLNGTEFESGIDACFASHKEPEAYLFKGQ-NYVRIDFTPGGKADTLVGN  208 (225)
T ss_dssp             CGGGTTSTTTTCCSEEEECSSTTEEEEEETT-EEEEEECCTTCGGGCEECC
T ss_pred             CCCcccccCCCCcCEEEEeCCCCEEEEEECC-EEEEEeCCcCCccceecCC
Confidence            2221    0122223334  47899999885 56779987    4444443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=94.03  E-value=2  Score=38.62  Aligned_cols=102  Identities=12%  Similarity=0.105  Sum_probs=51.2

Q ss_pred             CCEEEEEeCCCCCCceEEEeCCCCc-EEEecCCCCcccceeEEEE--CC-EEEEEccCCCCCCceEEEEEeCCCCc--ee
Q 045821          167 NQKIYCIGGLGDTHSWDVYDPRTNN-WKLHTEPNIFTEIEDSFVM--DG-KIYIRCSASAATSHVCALVYEPSTDS--WL  240 (352)
Q Consensus       167 ~~~iyv~gG~~~~~~v~~yd~~t~~-W~~~~~~~~~~~~~~~~~~--~g-~iyv~GG~~~~~~~~~i~~yd~~~~~--W~  240 (352)
                      ++.+++.++.+  ..+.+||..+.. .+.+...........++.+  ++ .+++.|+..+     .+..||..+..  -.
T Consensus       243 ~~~~l~s~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg-----~v~vwd~~~~~~~~~  315 (430)
T 2xyi_A          243 HESLFGSVADD--QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK-----TVALWDLRNLKLKLH  315 (430)
T ss_dssp             CTTEEEEEETT--SEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS-----EEEEEETTCTTSCSE
T ss_pred             CCCEEEEEeCC--CeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCC-----eEEEEeCCCCCCCeE
Confidence            45677766655  678999998752 1111001011111112222  34 4787776553     58888886532  11


Q ss_pred             ecCCCCCCCCCCcEEEE--CC-EEEEEecCCCCeEEEEeCCC
Q 045821          241 HADANMASGWRGPAVVV--DD-ALYVLDQSSGTKLMMWQKES  279 (352)
Q Consensus       241 ~~~~~~~~~~~~~~~~~--~~-~l~~~gg~~~~~v~~yd~~~  279 (352)
                      .+..   +......+..  ++ .+++.++..+ .+.+||...
T Consensus       316 ~~~~---h~~~v~~i~~sp~~~~~l~s~~~d~-~i~iwd~~~  353 (430)
T 2xyi_A          316 SFES---HKDEIFQVQWSPHNETILASSGTDR-RLHVWDLSK  353 (430)
T ss_dssp             EEEC---CSSCEEEEEECSSCTTEEEEEETTS-CCEEEEGGG
T ss_pred             Eeec---CCCCEEEEEECCCCCCEEEEEeCCC-cEEEEeCCC
Confidence            1111   1111111222  33 5777777665 889998876

>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*

Probab=93.99  E-value=3.5  Score=37.51  Aligned_cols=145  Identities=8%  Similarity=0.044  Sum_probs=80.7

Q ss_pred             EEEEECCEEEEEeCCCCCCCCCCeEEEEECCCC---------eeEecCCCCCcceeeeeEE--ECCEEEEEeCCCCCCce
Q 045821          114 GFEVLGKNAYLLGGCGWSEDATSEVYCYDASMN---------TWTDAAPMSTARCYFPCGV--LNQKIYCIGGLGDTHSW  182 (352)
Q Consensus       114 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~---------~W~~~~~~~~~r~~~~~~~--~~~~iyv~gG~~~~~~v  182 (352)
                      +++.+.+++|+|-|        ..+|+++....         .|..++   .  .--++..  .++++|+|-|    +.+
T Consensus       267 Ai~~~~ge~y~Fkg--------~~~wr~~~~~~~~~p~~I~~~Wp~LP---~--~iDAa~~~~~~g~~~fFKg----~~~  329 (450)
T 1su3_A          267 AITTIRGEVMFFKD--------RFYMRTNPFYPEVELNFISVFWPQLP---N--GLEAAYEFADRDEVRFFKG----NKY  329 (450)
T ss_dssp             EEEEETTEEEEEET--------TEEEECCTTSSSCEEEEGGGTCTTSC---S--SCCEEEEEGGGTEEEEEET----TEE
T ss_pred             eEEecCCeEEEEeC--------CEEEEEcCCCCcccceehhHhccCCC---C--CeeEEEEEcCCCeEEEEeC----CEE
Confidence            45668999999987        34455544332         233332   1  1112222  2689999998    778


Q ss_pred             EEEeCCCC--cE-EEec---CCCCcc-cceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCceee-----cCC-CCC
Q 045821          183 DVYDPRTN--NW-KLHT---EPNIFT-EIEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTDSWLH-----ADA-NMA  247 (352)
Q Consensus       183 ~~yd~~t~--~W-~~~~---~~~~~~-~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~-----~~~-~~~  247 (352)
                      |+|+..+-  .+ +.+.   -+|... ..-+++..  ++++|++-|.       ..|+||..+++-..     +.. .+.
T Consensus       330 W~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG~-------~yw~yd~~~~~~~~gYPk~I~~~fpg  402 (450)
T 1su3_A          330 WAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVAN-------KYWRYDEYKRSMDPGYPKMIAHDFPG  402 (450)
T ss_dssp             EEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETT-------EEEEEETTTTEECSSCSEEHHHHSTT
T ss_pred             EEecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeCC-------EEEEEeCCCccccCCCCcchhhcCCC
Confidence            88875421  00 1111   122211 12233333  6899999653       48999986543221     100 001


Q ss_pred             -CCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceEEc
Q 045821          248 -SGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPV  285 (352)
Q Consensus       248 -~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~  285 (352)
                       ...--+++..++++|++-|.   ..|+||..+.+-...
T Consensus       403 ip~~iDAA~~~~g~~YFFkg~---~ywr~d~~~~~v~~~  438 (450)
T 1su3_A          403 IGHKVDAVFMKDGFFYFFHGT---RQYKFDPKTKRILTL  438 (450)
T ss_dssp             SCSCCSEEEEETTEEEEEETT---EEEEEETTTTEEEEE
T ss_pred             CCCCccEEEEcCCeEEEEeCC---EEEEEECCcceEecc
Confidence             11122345578999999886   899999988766543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=93.98  E-value=0.91  Score=39.15  Aligned_cols=143  Identities=11%  Similarity=0.066  Sum_probs=77.6

Q ss_pred             CEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCceeecCCC
Q 045821          168 QKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTDSWLHADAN  245 (352)
Q Consensus       168 ~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~  245 (352)
                      +..++.|+.+  ..+.+||..+..................+.+  +++.++.|+.++     .+..||..+.+...+.. 
T Consensus        54 g~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~-  125 (368)
T 3mmy_A           54 GNFLIAGSWA--NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK-----TAKMWDLSSNQAIQIAQ-  125 (368)
T ss_dssp             SEEEEEEETT--SEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEE-
T ss_pred             ceEEEEECCC--CcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCC-----cEEEEEcCCCCceeecc-
Confidence            4777777765  6788898887433221111111111112222  666666665442     68888988877555422 


Q ss_pred             CCCCCCCcEE--EECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEcCCceEEEEEcCCc
Q 045821          246 MASGWRGPAV--VVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCSAVVIDVGNI  323 (352)
Q Consensus       246 ~~~~~~~~~~--~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~d~~~~  323 (352)
                      ..........  ..++.+++.++.++ .+.+||..+++-...-..+    ....++....+.+++.++.....+||....
T Consensus       126 ~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  200 (368)
T 3mmy_A          126 HDAPVKTIHWIKAPNYSCVMTGSWDK-TLKFWDTRSSNPMMVLQLP----ERCYCADVIYPMAVVATAERGLIVYQLENQ  200 (368)
T ss_dssp             CSSCEEEEEEEECSSCEEEEEEETTS-EEEEECSSCSSCSEEEECS----SCEEEEEEETTEEEEEEGGGCEEEEECSSS
T ss_pred             ccCceEEEEEEeCCCCCEEEEccCCC-cEEEEECCCCcEEEEEecC----CCceEEEecCCeeEEEeCCCcEEEEEeccc
Confidence            1111111112  23667777887766 8999999876532221111    123344455666666666666778887654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=93.95  E-value=0.012  Score=55.98  Aligned_cols=37  Identities=8%  Similarity=0.286  Sum_probs=28.9

Q ss_pred             CCccCCCcHHHHHHhhccCc-cccchhhhhhhhhhccc
Q 045821           15 VPLISGLPDDIALFCLARVP-RRYHAVLKCVSSRWRGL   51 (352)
Q Consensus        15 ~~~~~~lp~dl~~~il~r~p-~~~~~~l~~v~k~W~~l   51 (352)
                      ...|..||+|++.+|++++| .++..+++.|||+|+.+
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            35688999999999999999 99999999999999976

>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A

Probab=93.93  E-value=3.1  Score=36.70  Aligned_cols=144  Identities=7%  Similarity=0.064  Sum_probs=81.5

Q ss_pred             EEEEECCEEEEEeCCCCCCCCCCeEEEEECCCC---------eeEecCCCCCcceeeeeEEE--CCEEEEEeCCCCCCce
Q 045821          114 GFEVLGKNAYLLGGCGWSEDATSEVYCYDASMN---------TWTDAAPMSTARCYFPCGVL--NQKIYCIGGLGDTHSW  182 (352)
Q Consensus       114 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~---------~W~~~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v  182 (352)
                      ++..+++++|+|-|        ..+|+++....         .|..+   |  ..--++...  ++++|++-|    +.+
T Consensus       185 Av~~~~g~~~fFkg--------~~~Wr~~~~~~~~~p~~I~~~wpgL---P--~~iDAa~~~~~~g~~~fFkg----~~y  247 (365)
T 3ba0_A          185 AVTTVGNKIFFFKD--------RFFWLKVSERPKTSVNLISSLWPTL---P--SGIEAAYEIEARNQVFLFKD----DKY  247 (365)
T ss_dssp             CEEEETTEEEEEET--------TEEEECCSSCCCCCEEEHHHHCSSC---C--SSCCEEEEEGGGTEEEEEET----TEE
T ss_pred             eEEEcCCeEEEEeC--------CEEEEEcCCCccCCccchhhhccCC---C--CCccEEEEecCCCEEEEEeC----CEE
Confidence            34567999999976        34566554332         12222   2  111222233  789999998    778


Q ss_pred             EEEeCCCCc--E-EEecCC--CCcc-cceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCceeec-CCC-----CCC
Q 045821          183 DVYDPRTNN--W-KLHTEP--NIFT-EIEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTDSWLHA-DAN-----MAS  248 (352)
Q Consensus       183 ~~yd~~t~~--W-~~~~~~--~~~~-~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~-~~~-----~~~  248 (352)
                      ++|+..+-.  + +.|...  |... .--+++..  ++++|++-|.       ..|+||..+++-..- +..     +..
T Consensus       248 Wr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG~-------~yw~yd~~~~~v~~gyPk~I~~~f~g~  320 (365)
T 3ba0_A          248 WLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVDN-------QYWRYDERRQMMDPGYPKLITKNFQGI  320 (365)
T ss_dssp             EECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEETT-------EEEEEETTTTEECSSCCCCHHHHSTTC
T ss_pred             EEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEECC-------EEEEEeCCcceecCCCCcchhhcCCCC
Confidence            999765321  1 233332  2211 22234443  5899999554       489999876542211 000     011


Q ss_pred             C-CCCcEEEE-CCEEEEEecCCCCeEEEEeCCCCceEE
Q 045821          249 G-WRGPAVVV-DDALYVLDQSSGTKLMMWQKESREWSP  284 (352)
Q Consensus       249 ~-~~~~~~~~-~~~l~~~gg~~~~~v~~yd~~~~~W~~  284 (352)
                      . ..-+++.. ++++|++-|.   ..|+||..+.+-..
T Consensus       321 p~~iDaA~~~~~g~~YfFkg~---~ywr~d~~~~~v~~  355 (365)
T 3ba0_A          321 GPKIDAVFYSKNKYYYFFQGS---NQFEYDFLLQRITK  355 (365)
T ss_dssp             CSSCSEEEEETTTEEEEEETT---EEEEEETTTTEEEE
T ss_pred             CCccceeeEecCCcEEEEeCC---EEEEEECCccEEec
Confidence            1 12223444 8899999886   89999998877655

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=93.86  E-value=2.9  Score=36.00  Aligned_cols=186  Identities=8%  Similarity=-0.052  Sum_probs=94.6

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCe
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNT  147 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~  147 (352)
                      ++.+|+++..    ...++.||+  .++....+. .+.    ........-++.+++...        ..+++||+.+++
T Consensus        60 ~~~l~~~d~~----~~~i~~~d~--~~~~~~~~~-~~~----~v~~i~~~~dg~l~v~~~--------~gl~~~d~~~g~  120 (326)
T 2ghs_A           60 SGTAWWFNIL----ERELHELHL--ASGRKTVHA-LPF----MGSALAKISDSKQLIASD--------DGLFLRDTATGV  120 (326)
T ss_dssp             TTEEEEEEGG----GTEEEEEET--TTTEEEEEE-CSS----CEEEEEEEETTEEEEEET--------TEEEEEETTTCC
T ss_pred             CCEEEEEECC----CCEEEEEEC--CCCcEEEEE-CCC----cceEEEEeCCCeEEEEEC--------CCEEEEECCCCc
Confidence            4678877543    236788898  777655443 221    111222334778777642        348999999988


Q ss_pred             eEecCCCCC--cceeeeeEEE--CCEEEEEeCCC----CCCceEEEeCCCCcEEEecCCCCcccceeEEEE-CC-EEEEE
Q 045821          148 WTDAAPMST--ARCYFPCGVL--NQKIYCIGGLG----DTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM-DG-KIYIR  217 (352)
Q Consensus       148 W~~~~~~~~--~r~~~~~~~~--~~~iyv~gG~~----~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g-~iyv~  217 (352)
                      ...+...+.  +........+  ++++|+.....    ....+++||  +.+.+.+..  ........+.. ++ .+|+.
T Consensus       121 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~~~~~i~~s~dg~~lyv~  196 (326)
T 2ghs_A          121 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DISIPNSICFSPDGTTGYFV  196 (326)
T ss_dssp             EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EESSEEEEEECTTSCEEEEE
T ss_pred             EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCcccCCeEEcCCCCEEEEE
Confidence            776644321  1112222222  57777754211    115688888  455554421  00111122222 45 57887


Q ss_pred             ccCCCCCCceEEEEEeCC--CC-c------eeecCCCCCCCCCCcEEEE--CCEEEEEecCCCCeEEEEeCCCCceEEc
Q 045821          218 CSASAATSHVCALVYEPS--TD-S------WLHADANMASGWRGPAVVV--DDALYVLDQSSGTKLMMWQKESREWSPV  285 (352)
Q Consensus       218 GG~~~~~~~~~i~~yd~~--~~-~------W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~v~~yd~~~~~W~~~  285 (352)
                      ...     ...+++||..  ++ +      +..+..   .......+..  +|.||+.... +..|.+||+....-..+
T Consensus       197 ~~~-----~~~I~~~d~~~~~Gl~~~~~~~~~~~~~---~~~~p~gi~~d~~G~lwva~~~-~~~v~~~d~~g~~~~~i  266 (326)
T 2ghs_A          197 DTK-----VNRLMRVPLDARTGLPTGKAEVFIDSTG---IKGGMDGSVCDAEGHIWNARWG-EGAVDRYDTDGNHIARY  266 (326)
T ss_dssp             ETT-----TCEEEEEEBCTTTCCBSSCCEEEEECTT---SSSEEEEEEECTTSCEEEEEET-TTEEEEECTTCCEEEEE
T ss_pred             ECC-----CCEEEEEEcccccCCcccCceEEEECCC---CCCCCCeeEECCCCCEEEEEeC-CCEEEEECCCCCEEEEE
Confidence            422     2368888864  43 2      222211   0011112333  5677766422 23899999965544444

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=93.86  E-value=5  Score=38.78  Aligned_cols=116  Identities=18%  Similarity=0.204  Sum_probs=67.3

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcc-----cCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEE
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPART-----LRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYD  142 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~-----~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d  142 (352)
                      ++.||+....     -.++.+|..+-...|+.-...+...     +.....+.++.++.||+...       ...++.+|
T Consensus        70 ~g~vyv~~~~-----~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-------dg~l~AlD  137 (689)
T 1yiq_A           70 DGVMYTTGPF-----SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-------DGRLEAID  137 (689)
T ss_dssp             TTEEEEECGG-----GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TSEEEEEE
T ss_pred             CCEEEEEcCC-----CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-------CCEEEEEE
Confidence            7888876432     2467778722334576543322100     00112234567888888642       35789999


Q ss_pred             CCCCe--eEecCC-CCC--cceeeeeEEECCEEEEEeCCCC---CCceEEEeCCCCc--EEEe
Q 045821          143 ASMNT--WTDAAP-MST--ARCYFPCGVLNQKIYCIGGLGD---THSWDVYDPRTNN--WKLH  195 (352)
Q Consensus       143 ~~t~~--W~~~~~-~~~--~r~~~~~~~~~~~iyv~gG~~~---~~~v~~yd~~t~~--W~~~  195 (352)
                      ..|++  |+.-.. -+.  .....+.++.++.+|+..+...   ...+..||..|.+  |+.-
T Consensus       138 a~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          138 AKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             TTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence            98886  875432 111  1223345667899988543211   1679999999875  8754

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=93.77  E-value=3.9  Score=39.36  Aligned_cols=148  Identities=9%  Similarity=0.032  Sum_probs=79.4

Q ss_pred             CCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCC-CceEEEeCCCCc---EEEecCCCCcccceeEEEE
Q 045821          135 TSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDT-HSWDVYDPRTNN---WKLHTEPNIFTEIEDSFVM  210 (352)
Q Consensus       135 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~-~~v~~yd~~t~~---W~~~~~~~~~~~~~~~~~~  210 (352)
                      ..+++.+|..+..++.+..-......  .+.-++.+|+....+.. ..+..+|..+..   |+.+-+.............
T Consensus       251 ~~~l~~~~~~~~~~~~l~~~~~~~~~--~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~  328 (695)
T 2bkl_A          251 ENDVYWKRPGEKDFRLLVKGVGAKYE--VHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV  328 (695)
T ss_dssp             EEEEEEECTTCSSCEEEEECSSCCEE--EEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred             ceEEEEEcCCCCceEEeecCCCceEE--EEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE
Confidence            46788888777777776532222221  12245566666554322 788999987754   8877543222222233445


Q ss_pred             CCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECC-EEEEEec-CCC-CeEEEEeCCCCceEEccC
Q 045821          211 DGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDD-ALYVLDQ-SSG-TKLMMWQKESREWSPVGR  287 (352)
Q Consensus       211 ~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~l~~~gg-~~~-~~v~~yd~~~~~W~~~~~  287 (352)
                      ++++++....+   ....++.++.....-..+..+........+..-++ .+++... ... ..++.||..+++.+.+..
T Consensus       329 ~~~lv~~~~~d---g~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~~  405 (695)
T 2bkl_A          329 GGHLSLEYLKD---ATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWAK  405 (695)
T ss_dssp             TTEEEEEEEET---TEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEEEEC---CEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEec
Confidence            88888875332   23468888875544444432111110111111133 4544432 211 479999999888776654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=93.55  E-value=1.8  Score=36.85  Aligned_cols=185  Identities=13%  Similarity=0.078  Sum_probs=92.8

Q ss_pred             CEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecCC
Q 045821          120 KNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEP  198 (352)
Q Consensus       120 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~  198 (352)
                      +.||+.+..      ...+++|++ +++...+.. +.. .....+.- ++++|+.....  ..+.+||+. ++.+.+...
T Consensus        57 ~~l~~~d~~------~~~i~~~~~-~g~~~~~~~-~~~-~~~gl~~d~dG~l~v~~~~~--~~v~~~~~~-g~~~~~~~~  124 (305)
T 3dr2_A           57 RTLVWSDLV------GRRVLGWRE-DGTVDVLLD-ATA-FTNGNAVDAQQRLVHCEHGR--RAITRSDAD-GQAHLLVGR  124 (305)
T ss_dssp             TEEEEEETT------TTEEEEEET-TSCEEEEEE-SCS-CEEEEEECTTSCEEEEETTT--TEEEEECTT-SCEEEEECE
T ss_pred             CEEEEEECC------CCEEEEEeC-CCCEEEEeC-CCC-ccceeeECCCCCEEEEECCC--CEEEEECCC-CCEEEEEec
Confidence            446666532      346788888 444333321 111 11222222 57888764322  568899986 666665432


Q ss_pred             CCccc---ce-eEEEECCEEEEE----ccCCC--------CCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECC-EE
Q 045821          199 NIFTE---IE-DSFVMDGKIYIR----CSASA--------ATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDD-AL  261 (352)
Q Consensus       199 ~~~~~---~~-~~~~~~g~iyv~----GG~~~--------~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~l  261 (352)
                      .....   -. .++.-+|+||+.    |....        ......+++||+.+++.+.+. ..... .+.++.-++ .|
T Consensus       125 ~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p-~gl~~spdg~~l  202 (305)
T 3dr2_A          125 YAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHP-NGLAFSPDEQTL  202 (305)
T ss_dssp             ETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSE-EEEEECTTSSEE
T ss_pred             cCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCC-cceEEcCCCCEE
Confidence            11111   11 223337899985    32110        011347999999888877664 11100 111222345 47


Q ss_pred             EEEecCC----CCeEEEEeCCCCceEEc---cCCCCCcCCCCceEEE-eCCEEEEEcCCceEEEEEcCC
Q 045821          262 YVLDQSS----GTKLMMWQKESREWSPV---GRLSTLLTRPPCKLVA-IGKTIFVIGKGCSAVVIDVGN  322 (352)
Q Consensus       262 ~~~gg~~----~~~v~~yd~~~~~W~~~---~~~~~~~~~~~~~~~~-~~~~i~v~gG~~~~~~~d~~~  322 (352)
                      |+.....    ...+++||...+.....   ...+.   ....++.. -++.||+-. ...+.+||++.
T Consensus       203 yv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~---~~pdgi~~d~~G~lwv~~-~~gv~~~~~~g  267 (305)
T 3dr2_A          203 YVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPD---GLPDGFCVDRGGWLWSSS-GTGVCVFDSDG  267 (305)
T ss_dssp             EEEECCC---CCCEEEEEEEETTEEEEEEEEECCSS---SCCCSEEECTTSCEEECC-SSEEEEECTTS
T ss_pred             EEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCC---CCCCeEEECCCCCEEEec-CCcEEEECCCC
Confidence            7765432    14899999876543221   11111   11112222 356677765 44677888854

>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1

Probab=93.52  E-value=2.3  Score=33.82  Aligned_cols=146  Identities=8%  Similarity=-0.008  Sum_probs=80.7

Q ss_pred             EEEEECCEEEEEeCCCCCCCCCCeEEEEECCCC--eeE--ec----CCCCCcceeeeeEEE--CCEEEEEeCCCCCCceE
Q 045821          114 GFEVLGKNAYLLGGCGWSEDATSEVYCYDASMN--TWT--DA----APMSTARCYFPCGVL--NQKIYCIGGLGDTHSWD  183 (352)
Q Consensus       114 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~--~W~--~~----~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~  183 (352)
                      +++.+++++|+|-|        ..+|+++....  ...  .+    +.+|.  .--++...  ++++|++-|    +.++
T Consensus        11 Ai~~~~g~~yfFkg--------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~--~IDAa~~~~~~~~~yfFkG----~~yw   76 (195)
T 1itv_A           11 AIAEIGNQLYLFKD--------GKYWRFSEGRGSRPQGPFLIADKWPALPR--KLDSVFEEPLSKKLFFFSG----RQVW   76 (195)
T ss_dssp             EEEEETTEEEEEET--------TEEEEECCSSSCCCEEEEEHHHHCTTSCS--SCSEEEECTTTCCEEEEET----TEEE
T ss_pred             EEEEeCCEEEEEEC--------CEEEEEECCccccCCCcEEhhhccCCCCC--CccEEEEECCCCeEEEEeC----CEEE
Confidence            35567999999977        45677766542  111  11    12332  11122222  678999999    7789


Q ss_pred             EEeCCCCcE-EEecC--CCCcccceeEEE--ECCEEEEEccCCCCCCceEEEEEeCCCCceee-----cCC-CCC-CCCC
Q 045821          184 VYDPRTNNW-KLHTE--PNIFTEIEDSFV--MDGKIYIRCSASAATSHVCALVYEPSTDSWLH-----ADA-NMA-SGWR  251 (352)
Q Consensus       184 ~yd~~t~~W-~~~~~--~~~~~~~~~~~~--~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~-----~~~-~~~-~~~~  251 (352)
                      +|+..+-.- +.|..  +|......-++.  .++++|++-|.       ..++||..+++-..     +.. -+. +...
T Consensus        77 ~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg~-------~ywr~d~~~~~~~~gyPr~i~~~w~Gvp~~i  149 (195)
T 1itv_A           77 VYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGR-------RLWRFDVKAQMVDPRSASEVDRMFPGVPLDT  149 (195)
T ss_dssp             EEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETT-------EEEEEETTTTEECGGGCEEHHHHSTTSCSSC
T ss_pred             EEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeCC-------EEEEEeCCcccccCCCccChhhcCCCCCCCC
Confidence            998653211 11211  111111122333  36899999554       38999987654221     100 000 1112


Q ss_pred             CcEEEECCEEEEEecCCCCeEEEEeCCCCceE
Q 045821          252 GPAVVVDDALYVLDQSSGTKLMMWQKESREWS  283 (352)
Q Consensus       252 ~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~  283 (352)
                      -+++..++.+|++-|.   ..++||..+..-.
T Consensus       150 daa~~~~g~~Yffkg~---~y~~~~~~~~~v~  178 (195)
T 1itv_A          150 HDVFQFREKAYFCQDR---FYWRVSSRSELNQ  178 (195)
T ss_dssp             SEEEEETTEEEEEETT---EEEEEECCTTCCE
T ss_pred             CEEEEeCCeEEEEeCC---EEEEEECCccEEe
Confidence            2345568999999886   8999999876543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=93.29  E-value=6  Score=37.95  Aligned_cols=104  Identities=9%  Similarity=0.047  Sum_probs=52.8

Q ss_pred             EEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCC
Q 045821          169 KIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMAS  248 (352)
Q Consensus       169 ~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~  248 (352)
                      ..++.|+.+  ..+.+||..+..-...-.-........+..-++++++.|+.++     .+..||..+.+-...-  ...
T Consensus       532 ~~l~s~s~d--~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg-----~i~iwd~~~~~~~~~~--~~~  602 (694)
T 3dm0_A          532 PTIVSASWD--KTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDG-----VVLLWDLAEGKKLYSL--EAN  602 (694)
T ss_dssp             CEEEEEETT--SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS-----BCEEEETTTTEEEECC--BCS
T ss_pred             ceEEEEeCC--CeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCceEEEe--cCC
Confidence            355556555  6789999987764432111111111112223677888776553     4777888766432211  111


Q ss_pred             CCCCcEEE-ECCEEEEEecCCCCeEEEEeCCCCceE
Q 045821          249 GWRGPAVV-VDDALYVLDQSSGTKLMMWQKESREWS  283 (352)
Q Consensus       249 ~~~~~~~~-~~~~l~~~gg~~~~~v~~yd~~~~~W~  283 (352)
                      ......+. -++.++..+. .+ .+.+||..+++-.
T Consensus       603 ~~v~~~~~sp~~~~l~~~~-~~-~i~iwd~~~~~~~  636 (694)
T 3dm0_A          603 SVIHALCFSPNRYWLCAAT-EH-GIKIWDLESKSIV  636 (694)
T ss_dssp             SCEEEEEECSSSSEEEEEE-TT-EEEEEETTTTEEE
T ss_pred             CcEEEEEEcCCCcEEEEEc-CC-CEEEEECCCCCCh
Confidence            11111112 2444444443 33 6999999887643

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=93.27  E-value=3.4  Score=35.05  Aligned_cols=208  Identities=14%  Similarity=0.197  Sum_probs=99.4

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCC-CCCeeEeccCCCcccCCcceEEEEE-CCEEEEEeCCCCCCCCCCeEEEEECCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNST-RRSWKMIHELPARTLRRKGMGFEVL-GKNAYLLGGCGWSEDATSEVYCYDASM  145 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t  145 (352)
                      ++.||+. ..    .-.++.||+  . ...|......+     . ..+.+.. ++.+|+..       ....++.||+..
T Consensus       107 ~~~l~v~-t~----~~~l~~~d~--~g~~~~~~~~~~~-----~-~~~~~~~~~g~l~vgt-------~~~~l~~~d~~g  166 (330)
T 3hxj_A          107 EDILYVT-SM----DGHLYAINT--DGTEKWRFKTKKA-----I-YATPIVSEDGTIYVGS-------NDNYLYAINPDG  166 (330)
T ss_dssp             TTEEEEE-CT----TSEEEEECT--TSCEEEEEECSSC-----C-CSCCEECTTSCEEEEC-------TTSEEEEECTTS
T ss_pred             CCEEEEE-ec----CCEEEEEcC--CCCEEEEEcCCCc-----e-eeeeEEcCCCEEEEEc-------CCCEEEEECCCC
Confidence            6667654 21    124677888  5 33454432211     1 1112333 56677642       125688899882


Q ss_pred             C-eeEecCCCCCcceeeeeEE-ECCEEEEEeCCCCCCceEEEeCCC-CcEEEecCCCCcccceeEEEECCEEEEEccCCC
Q 045821          146 N-TWTDAAPMSTARCYFPCGV-LNQKIYCIGGLGDTHSWDVYDPRT-NNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASA  222 (352)
Q Consensus       146 ~-~W~~~~~~~~~r~~~~~~~-~~~~iyv~gG~~~~~~v~~yd~~t-~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~  222 (352)
                      . .|..-..  .. ...+.+. -++.+|+..     ..+.+||... ..|+....  .......+..-+|.||+.. .. 
T Consensus       167 ~~~~~~~~~--~~-~~~~~~~d~~g~l~v~t-----~~l~~~d~~g~~~~~~~~~--~~~~~~~~~~~~g~l~v~t-~~-  234 (330)
T 3hxj_A          167 TEKWRFKTN--DA-ITSAASIGKDGTIYFGS-----DKVYAINPDGTEKWNFYAG--YWTVTRPAISEDGTIYVTS-LD-  234 (330)
T ss_dssp             CEEEEEECS--SC-CCSCCEECTTCCEEEES-----SSEEEECTTSCEEEEECCS--SCCCSCCEECTTSCEEEEE-TT-
T ss_pred             CEeEEEecC--CC-ceeeeEEcCCCEEEEEe-----CEEEEECCCCcEEEEEccC--CcceeceEECCCCeEEEEc-CC-
Confidence            2 2554322  11 1222333 267777755     4588899432 24665321  1111112222356888863 21 


Q ss_pred             CCCceEEEEEeCCCCc-eeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCC-ceEEccCCCCCcCCCCceEE
Q 045821          223 ATSHVCALVYEPSTDS-WLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESR-EWSPVGRLSTLLTRPPCKLV  300 (352)
Q Consensus       223 ~~~~~~i~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~-~W~~~~~~~~~~~~~~~~~~  300 (352)
                          ..+.+||..... |..-..  ........+..++.||+.. ..+ .+++||+..+ .|..-  ++.   ....+++
T Consensus       235 ----~gl~~~~~~g~~~~~~~~~--~~~~~~~~~~~~g~l~v~t-~~g-gl~~~d~~g~~~~~~~--~~~---~~~~~~~  301 (330)
T 3hxj_A          235 ----GHLYAINPDGTEKWRFKTG--KRIESSPVIGNTDTIYFGS-YDG-HLYAINPDGTEKWNFE--TGS---WIIATPV  301 (330)
T ss_dssp             ----TEEEEECTTSCEEEEEECS--SCCCSCCEECTTSCEEEEC-TTC-EEEEECTTSCEEEEEE--CSS---CCCSCCE
T ss_pred             ----CeEEEECCCCCEeEEeeCC--CCccccceEcCCCeEEEec-CCC-CEEEECCCCcEEEEEE--cCC---ccccceE
Confidence                247888875443 543321  1111122222267777643 333 7999998544 35432  222   1222334


Q ss_pred             E-eCCEEEEEcCCceEEEEEcC
Q 045821          301 A-IGKTIFVIGKGCSAVVIDVG  321 (352)
Q Consensus       301 ~-~~~~i~v~gG~~~~~~~d~~  321 (352)
                      . .++.||+-+ ......+++.
T Consensus       302 ~d~~g~l~~gt-~~G~~~~~~~  322 (330)
T 3hxj_A          302 IDENGTIYFGT-RNGKFYALFN  322 (330)
T ss_dssp             ECTTCCEEEEC-TTSCEEEEEC
T ss_pred             EcCCCEEEEEc-CCCeEEEEec
Confidence            4 577888744 4444444433

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=93.24  E-value=5.7  Score=37.52  Aligned_cols=105  Identities=9%  Similarity=0.132  Sum_probs=58.2

Q ss_pred             EEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEE--ECCEEEEEccCCCCCCceEEEEEeCCCCceee-cCC-C
Q 045821          170 IYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFV--MDGKIYIRCSASAATSHVCALVYEPSTDSWLH-ADA-N  245 (352)
Q Consensus       170 iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~--~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~-~~~-~  245 (352)
                      .++.|+.+  ..+..||..+.+....  +........++.  -+|++++.|+.++     .+..+|..+++-.. +.. .
T Consensus       162 ~l~s~s~D--~~v~lwd~~~~~~~~~--l~~H~~~V~~v~fspdg~~las~s~D~-----~i~lwd~~~g~~~~~~~~~~  232 (611)
T 1nr0_A          162 RIISGSDD--NTVAIFEGPPFKFKST--FGEHTKFVHSVRYNPDGSLFASTGGDG-----TIVLYNGVDGTKTGVFEDDS  232 (611)
T ss_dssp             EEEEEETT--SCEEEEETTTBEEEEE--ECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEECBCTT
T ss_pred             EEEEEeCC--CeEEEEECCCCeEeee--eccccCceEEEEECCCCCEEEEEECCC-----cEEEEECCCCcEeeeecccc
Confidence            46666655  6788898776544322  221111112222  2678888776653     47788877665432 211 1


Q ss_pred             CCCCCCC-c--EEE--ECCEEEEEecCCCCeEEEEeCCCCceEE
Q 045821          246 MASGWRG-P--AVV--VDDALYVLDQSSGTKLMMWQKESREWSP  284 (352)
Q Consensus       246 ~~~~~~~-~--~~~--~~~~l~~~gg~~~~~v~~yd~~~~~W~~  284 (352)
                      .....+. .  .+.  -+++.++.++.++ .+.+||..+.+...
T Consensus       233 ~~~~~h~~~V~~v~~spdg~~l~s~s~D~-~v~lWd~~~~~~~~  275 (611)
T 1nr0_A          233 LKNVAHSGSVFGLTWSPDGTKIASASADK-TIKIWNVATLKVEK  275 (611)
T ss_dssp             SSSCSSSSCEEEEEECTTSSEEEEEETTS-EEEEEETTTTEEEE
T ss_pred             ccccccCCCEEEEEECCCCCEEEEEeCCC-eEEEEeCCCCceee
Confidence            1110111 1  222  2677777777766 89999998876643

>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A

Probab=93.22  E-value=0.7  Score=37.88  Aligned_cols=101  Identities=9%  Similarity=0.081  Sum_probs=57.5

Q ss_pred             ECCEEEEEeCCCCCCceEEEe--CCCCcEE------Eec----CCCC---cccceeEEEE--CCEEEEEccCCCCCCceE
Q 045821          166 LNQKIYCIGGLGDTHSWDVYD--PRTNNWK------LHT----EPNI---FTEIEDSFVM--DGKIYIRCSASAATSHVC  228 (352)
Q Consensus       166 ~~~~iyv~gG~~~~~~v~~yd--~~t~~W~------~~~----~~~~---~~~~~~~~~~--~g~iyv~GG~~~~~~~~~  228 (352)
                      .++++|++-|    ..+++|+  +.+..-.      .+.    .+|.   +...-++...  ++++|++-|..       
T Consensus        71 ~~g~~~fFKg----~~~Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p~~IDAA~~~~~~~k~yfFkG~~-------  139 (227)
T 3lp9_A           71 ENNEAFIFYE----NFCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGIDAAYRSTRGKEVYLFKGDQ-------  139 (227)
T ss_dssp             STTEEEEEET----TEEEEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTTTCCSEEEECSSTTEEEEEETTE-------
T ss_pred             CCCEEEEEeC----CEEEEEeCCCCccccccccCceEHhhhcCCCCCccCCCcccEEEEECCCCEEEEEECCE-------
Confidence            5899999999    7889998  3221111      111    1221   1122233333  68999996544       


Q ss_pred             EEEEeCCCCceee-----cCCCCCC------CCCCcEEE---ECCEEEEEecCCCCeEEEEeCCCC
Q 045821          229 ALVYEPSTDSWLH-----ADANMAS------GWRGPAVV---VDDALYVLDQSSGTKLMMWQKESR  280 (352)
Q Consensus       229 i~~yd~~~~~W~~-----~~~~~~~------~~~~~~~~---~~~~l~~~gg~~~~~v~~yd~~~~  280 (352)
                      .|+||..+++-..     +....+.      ...--++.   .++++|++-|.   ..|+||..++
T Consensus       140 yw~~d~~~~~~~~gyPk~i~~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg~---~Ywr~d~~~~  202 (227)
T 3lp9_A          140 YARIDYGSNSMVNKEIKSISSGYPCFRNTIFESGADAAFASHKTNEVYFFKDD---HYARVKVTPX  202 (227)
T ss_dssp             EEEEETTTTEESSSSCEEHHHHCGGGTTSGGGGCCSEEEECSSTTEEEEEETT---EEEEEECCSS
T ss_pred             EEEEeCCCccccCCCCeEHHHCCCCccccccCCCccEEEEcCCCceEEEEECC---EEEEEECCcc
Confidence            8999987553221     1000110      01122333   35899999886   8999998876

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=93.22  E-value=3.5  Score=35.03  Aligned_cols=183  Identities=11%  Similarity=-0.001  Sum_probs=94.9

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecC
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTE  197 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~  197 (352)
                      ++.||+..-      ....++++|+..+.-..+. .+  ...+.++.. ++++|+.........+..||+.+.+.+.+..
T Consensus        42 ~g~lyv~d~------~~~~I~~~d~~g~~~~~~~-~~--~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~  112 (306)
T 2p4o_A           42 DGTIFVTNH------EVGEIVSITPDGNQQIHAT-VE--GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLT  112 (306)
T ss_dssp             TSCEEEEET------TTTEEEEECTTCCEEEEEE-CS--SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             CCCEEEEeC------CCCeEEEECCCCceEEEEe-CC--CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEe
Confidence            567888752      2356899998865322221 11  222333333 5788887643211358889988888776654


Q ss_pred             CCCcccceeEEE-ECCEEEEEccCCCCCCceEEEEEeCCCCc---eeecCC----CCCCCCCC-cEEE-ECCEEEEEecC
Q 045821          198 PNIFTEIEDSFV-MDGKIYIRCSASAATSHVCALVYEPSTDS---WLHADA----NMASGWRG-PAVV-VDDALYVLDQS  267 (352)
Q Consensus       198 ~~~~~~~~~~~~-~~g~iyv~GG~~~~~~~~~i~~yd~~~~~---W~~~~~----~~~~~~~~-~~~~-~~~~l~~~gg~  267 (352)
                      .+..+.....+. .++.+|+....     ...++++|+.+.+   |..-+.    ........ ..+. .++.||+....
T Consensus       113 ~~~~~~~~g~~~~~~~~~~v~d~~-----~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~  187 (306)
T 2p4o_A          113 LPDAIFLNGITPLSDTQYLTADSY-----RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTE  187 (306)
T ss_dssp             CTTCSCEEEEEESSSSEEEEEETT-----TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETT
T ss_pred             CCCccccCcccccCCCcEEEEECC-----CCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCC
Confidence            433333223332 35577876321     1268999987542   211110    01111111 1233 34578887654


Q ss_pred             CCCeEEEEeCCC-CceE---EccCCCCCcCCCCceEEE-eCCEEEEEc-CCceEEEEEcC
Q 045821          268 SGTKLMMWQKES-REWS---PVGRLSTLLTRPPCKLVA-IGKTIFVIG-KGCSAVVIDVG  321 (352)
Q Consensus       268 ~~~~v~~yd~~~-~~W~---~~~~~~~~~~~~~~~~~~-~~~~i~v~g-G~~~~~~~d~~  321 (352)
                      .+ .|++||++. ++..   .+..+     ..-.+++. -++.||+.. +...+..||++
T Consensus       188 ~~-~I~~~~~~~~g~~~~~~~~~~~-----~~P~gi~vd~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          188 KM-LLLRIPVDSTDKPGEPEIFVEQ-----TNIDDFAFDVEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             TT-EEEEEEBCTTSCBCCCEEEEES-----CCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             CC-EEEEEEeCCCCCCCccEEEecc-----CCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence            44 899999875 2221   11111     01122332 356788764 34567778875

>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*

Probab=93.06  E-value=5.1  Score=36.46  Aligned_cols=148  Identities=5%  Similarity=0.002  Sum_probs=80.8

Q ss_pred             eeEEECCEEEEEeCCCCCCceEEEeCCCCcEEE--ecC-CCCc-ccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCC
Q 045821          162 PCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKL--HTE-PNIF-TEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPS  235 (352)
Q Consensus       162 ~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~--~~~-~~~~-~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~  235 (352)
                      +++.+++++|+|-|    ..+++++.....+..  |.. .+.. ...-++...  +|++|++=|..       +|+|+..
T Consensus       267 Ai~~~~ge~y~Fkg----~~~wr~~~~~~~~~p~~I~~~Wp~LP~~iDAa~~~~~~g~~~fFKg~~-------~W~~~~~  335 (450)
T 1su3_A          267 AITTIRGEVMFFKD----RFYMRTNPFYPEVELNFISVFWPQLPNGLEAAYEFADRDEVRFFKGNK-------YWAVQGQ  335 (450)
T ss_dssp             EEEEETTEEEEEET----TEEEECCTTSSSCEEEEGGGTCTTSCSSCCEEEEEGGGTEEEEEETTE-------EEEEETT
T ss_pred             eEEecCCeEEEEeC----CEEEEEcCCCCcccceehhHhccCCCCCeeEEEEEcCCCeEEEEeCCE-------EEEecCC
Confidence            45667999999999    667888776544332  111 1111 112233333  68999995543       7777643


Q ss_pred             CC--ce-eecC---CCCCC-CCCCcEEEE--CCEEEEEecCCCCeEEEEeCCCCceE-----Ecc-CCCCCcCCCCceEE
Q 045821          236 TD--SW-LHAD---ANMAS-GWRGPAVVV--DDALYVLDQSSGTKLMMWQKESREWS-----PVG-RLSTLLTRPPCKLV  300 (352)
Q Consensus       236 ~~--~W-~~~~---~~~~~-~~~~~~~~~--~~~l~~~gg~~~~~v~~yd~~~~~W~-----~~~-~~~~~~~~~~~~~~  300 (352)
                      +-  .+ ..+.   ..+.. ..--+++..  ++++|++-|.   ..|+||..+++-.     .+. ..|. .+...-+++
T Consensus       336 ~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG~---~yw~yd~~~~~~~~gYPk~I~~~fpg-ip~~iDAA~  411 (450)
T 1su3_A          336 NVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVAN---KYWRYDEYKRSMDPGYPKMIAHDFPG-IGHKVDAVF  411 (450)
T ss_dssp             EECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETT---EEEEEETTTTEECSSCSEEHHHHSTT-SCSCCSEEE
T ss_pred             cccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeCC---EEEEEeCCCccccCCCCcchhhcCCC-CCCCccEEE
Confidence            21  00 0010   00111 111223333  6899999885   8999998754322     111 1121 122233444


Q ss_pred             EeCCEEEEEcCCceEEEEEcCCccc
Q 045821          301 AIGKTIFVIGKGCSAVVIDVGNIGN  325 (352)
Q Consensus       301 ~~~~~i~v~gG~~~~~~~d~~~~~w  325 (352)
                      ..++++|+|-|. ..+-||..+.+=
T Consensus       412 ~~~g~~YFFkg~-~ywr~d~~~~~v  435 (450)
T 1su3_A          412 MKDGFFYFFHGT-RQYKFDPKTKRI  435 (450)
T ss_dssp             EETTEEEEEETT-EEEEEETTTTEE
T ss_pred             EcCCeEEEEeCC-EEEEEECCcceE
Confidence            578999999876 566788776553

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=92.96  E-value=4  Score=34.99  Aligned_cols=187  Identities=11%  Similarity=-0.016  Sum_probs=97.1

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCC----CCeeEeccCCCcccCCcceEEEE--ECCEEEEEeCCCCCCCCCCeEEEE
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTR----RSWKMIHELPARTLRRKGMGFEV--LGKNAYLLGGCGWSEDATSEVYCY  141 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~----~~w~~~~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~  141 (352)
                      ++.||+.-.    ....++.+|+  .+    .....+....   .... ..+++  .++.||+.-.      ....+.++
T Consensus        41 ~~~ly~~D~----~~~~I~~~~~--~g~~~~~~~~~~~~~~---~~~p-~glavd~~~~~ly~~d~------~~~~I~~~  104 (316)
T 1ijq_A           41 SNRIYWSDL----SQRMICSTQL--DRAHGVSSYDTVISRD---IQAP-DGLAVDWIHSNIYWTDS------VLGTVSVA  104 (316)
T ss_dssp             TTEEEEEET----TTTEEEEEEC----------CEEEECSS---CSCC-CEEEEETTTTEEEEEET------TTTEEEEE
T ss_pred             CCEEEEEEC----CCCcEEEEEC--CCCCCCcccEEEEeCC---CCCc-CEEEEeecCCeEEEEEC------CCCEEEEE
Confidence            567888732    2335677777  54    2222222111   0111 23443  4789999853      24678889


Q ss_pred             ECCCCeeEecC--CCCCcceeeeeEE--ECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE--CCEEE
Q 045821          142 DASMNTWTDAA--PMSTARCYFPCGV--LNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM--DGKIY  215 (352)
Q Consensus       142 d~~t~~W~~~~--~~~~~r~~~~~~~--~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~iy  215 (352)
                      |+....-+.+.  .+..|   ...++  .++.||+..... ...++++++....-+.+.... ...-...+.-  +++||
T Consensus       105 ~~~g~~~~~~~~~~~~~P---~~iavdp~~g~ly~~d~~~-~~~I~~~~~dG~~~~~~~~~~-~~~P~gla~d~~~~~lY  179 (316)
T 1ijq_A          105 DTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWGT-PAKIKKGGLNGVDIYSLVTEN-IQWPNGITLDLLSGRLY  179 (316)
T ss_dssp             ETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECSS-SCEEEEEETTSCCEEEEECSS-CSCEEEEEEETTTTEEE
T ss_pred             eCCCCceEEEEECCCCCc---ceEEeCCCCCEEEEEccCC-CCeEEEEcCCCCCeEEEEECC-CCCceEEEEeccCCEEE
Confidence            98765433322  22223   23333  368999986321 157889988654433332111 1112233333  68999


Q ss_pred             EEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCC-cEEEECCEEEEEecCCCCeEEEEeCCCCc
Q 045821          216 IRCSASAATSHVCALVYEPSTDSWLHADANMASGWRG-PAVVVDDALYVLDQSSGTKLMMWQKESRE  281 (352)
Q Consensus       216 v~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~-~~~~~~~~l~~~gg~~~~~v~~yd~~~~~  281 (352)
                      +.-..     ...|+++|.....-+.+........+. ..++.++.||+..... ..|.++|+.+++
T Consensus       180 ~~D~~-----~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~-~~V~~~~~~~g~  240 (316)
T 1ijq_A          180 WVDSK-----LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIIN-EAIFSANRLTGS  240 (316)
T ss_dssp             EEETT-----TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTT-TEEEEEETTTCC
T ss_pred             EEECC-----CCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEECCC-CeEEEEeCCCCc
Confidence            98422     237889988643322221111111111 2244688999987444 499999986554

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=92.93  E-value=4.1  Score=35.06  Aligned_cols=186  Identities=6%  Similarity=0.028  Sum_probs=81.9

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeE-ecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEec
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWT-DAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHT  196 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~-~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~  196 (352)
                      ++.+.+.|+.      ...+.+||..+++.. .+.....+ . .+++.. ++...+.|+.+  ..+.+||.....-....
T Consensus        87 ~~~~l~s~s~------D~~v~lwd~~~~~~~~~~~~h~~~-v-~~v~~sp~~~~l~s~~~d--~~i~~wd~~~~~~~~~~  156 (343)
T 2xzm_R           87 ENCFAISSSW------DKTLRLWDLRTGTTYKRFVGHQSE-V-YSVAFSPDNRQILSAGAE--REIKLWNILGECKFSSA  156 (343)
T ss_dssp             STTEEEEEET------TSEEEEEETTSSCEEEEEECCCSC-E-EEEEECSSTTEEEEEETT--SCEEEEESSSCEEEECC
T ss_pred             CCCEEEEEcC------CCcEEEEECCCCcEEEEEcCCCCc-E-EEEEECCCCCEEEEEcCC--CEEEEEeccCCceeeee
Confidence            4455555553      356888998877532 22111111 1 112221 45556666655  67888888744322222


Q ss_pred             CCCCcccceeEEEE--C----------CEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEE
Q 045821          197 EPNIFTEIEDSFVM--D----------GKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVL  264 (352)
Q Consensus       197 ~~~~~~~~~~~~~~--~----------g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~  264 (352)
                      ..........++.+  +          +.+++.|+.++     .+..||.....-..+.. ........+...+++.++.
T Consensus       157 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~-h~~~v~~~~~s~~g~~l~s  230 (343)
T 2xzm_R          157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG-----RLKVWNTNFQIRYTFKA-HESNVNHLSISPNGKYIAT  230 (343)
T ss_dssp             TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTS-----EEEEEETTTEEEEEEEC-CSSCEEEEEECTTSSEEEE
T ss_pred             cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCC-----EEEEEcCCCceeEEEcC-ccccceEEEECCCCCEEEE
Confidence            11111111111211  1          13455554442     46667743221111111 0000001112236777777


Q ss_pred             ecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEE-EeCCEEEEEcCCceEEEEEcCCcc
Q 045821          265 DQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLV-AIGKTIFVIGKGCSAVVIDVGNIG  324 (352)
Q Consensus       265 gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~i~v~gG~~~~~~~d~~~~~  324 (352)
                      |+.++ .+.+||..+..-. ...+..  .....++. ..++.++..|....+.+||..+..
T Consensus       231 gs~dg-~v~iwd~~~~~~~-~~~~~~--~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~  287 (343)
T 2xzm_R          231 GGKDK-KLLIWDILNLTYP-QREFDA--GSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQS  287 (343)
T ss_dssp             EETTC-EEEEEESSCCSSC-SEEEEC--SSCEEEEEECSSSCEEEEEESSCEEEEESSSCC
T ss_pred             EcCCC-eEEEEECCCCccc-ceeecC--CCcEEEEEECCCCCEEEEECCCCEEEEEeCCCC
Confidence            87766 8999998432210 000000  00111222 224555555544457788877543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=92.70  E-value=1.1  Score=42.00  Aligned_cols=174  Identities=9%  Similarity=-0.031  Sum_probs=89.8

Q ss_pred             EecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE
Q 045821           87 VLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL  166 (352)
Q Consensus        87 ~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~  166 (352)
                      +||.  .++....+...+   .   .......+|+..+++..+.  .....++++|..+++.+.+.......  ...+..
T Consensus       136 l~d~--~~g~~~~l~~~~---~---~~~~~spDG~~la~~~~~~--~~~~~i~~~d~~~g~~~~l~~~~~~~--~~~~~S  203 (582)
T 3o4h_A          136 LYAL--DGGGLRELARLP---G---FGFVSDIRGDLIAGLGFFG--GGRVSLFTSNLSSGGLRVFDSGEGSF--SSASIS  203 (582)
T ss_dssp             EEEE--ETTEEEEEEEES---S---CEEEEEEETTEEEEEEEEE--TTEEEEEEEETTTCCCEEECCSSCEE--EEEEEC
T ss_pred             EEEc--cCCcEEEeecCC---C---ceEEECCCCCEEEEEEEcC--CCCeEEEEEcCCCCCceEeecCCCcc--ccceEC
Confidence            5577  777666665433   1   2223334555444443221  11256999999999888775433211  222222


Q ss_pred             -CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeE--------EEECCEEEEEccCCCCCCceEEEEEeCCCC
Q 045821          167 -NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDS--------FVMDGKIYIRCSASAATSHVCALVYEPSTD  237 (352)
Q Consensus       167 -~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~--------~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~  237 (352)
                       ||+.++.+..+....++++|..+++.+.+..... .....+        ..-+|++++.+...+     .+..|+.  +
T Consensus       204 pDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g-----~~~l~~~--g  275 (582)
T 3o4h_A          204 PGMKVTAGLETAREARLVTVDPRDGSVEDLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREG-----RSAVFID--G  275 (582)
T ss_dssp             TTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETT-----EEEEEET--T
T ss_pred             CCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCC-----cEEEEEE--C
Confidence             5554444433322579999999988773322111 111111        334677777754332     3556666  4


Q ss_pred             ceeecCCCCCCCCCCcEEEECCEEEEEecCCC--CeEEEEeCCCCceEEc
Q 045821          238 SWLHADANMASGWRGPAVVVDDALYVLDQSSG--TKLMMWQKESREWSPV  285 (352)
Q Consensus       238 ~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~--~~v~~yd~~~~~W~~~  285 (352)
                      +....   +.......++. ++++++.++...  ..++.+|..+ +.+++
T Consensus       276 ~~~~~---~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~-~~~~l  320 (582)
T 3o4h_A          276 ERVEA---PQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE-PLLEG  320 (582)
T ss_dssp             EEECC---CSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC-EEECC
T ss_pred             Ceecc---CCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC-ceEEE
Confidence            43331   11111112334 888887765443  4688888765 55444

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=92.52  E-value=4.7  Score=34.69  Aligned_cols=142  Identities=9%  Similarity=0.030  Sum_probs=64.9

Q ss_pred             CCEEEEEeCCCCCCceEEEeCCCCcEEE-ecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCC
Q 045821          167 NQKIYCIGGLGDTHSWDVYDPRTNNWKL-HTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADAN  245 (352)
Q Consensus       167 ~~~iyv~gG~~~~~~v~~yd~~t~~W~~-~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~  245 (352)
                      ++.+.+.|+.+  ..+.+||..+.+... +.. ....-...+..-+++..+.|+.++     .+..||.....-......
T Consensus        87 ~~~~l~s~s~D--~~v~lwd~~~~~~~~~~~~-h~~~v~~v~~sp~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~~~  158 (343)
T 2xzm_R           87 ENCFAISSSWD--KTLRLWDLRTGTTYKRFVG-HQSEVYSVAFSPDNRQILSAGAER-----EIKLWNILGECKFSSAEK  158 (343)
T ss_dssp             STTEEEEEETT--SEEEEEETTSSCEEEEEEC-CCSCEEEEEECSSTTEEEEEETTS-----CEEEEESSSCEEEECCTT
T ss_pred             CCCEEEEEcCC--CcEEEEECCCCcEEEEEcC-CCCcEEEEEECCCCCEEEEEcCCC-----EEEEEeccCCceeeeecc
Confidence            45566666655  688899998876432 211 111111111222566666666543     466777653322222111


Q ss_pred             CCCCCCCcEEEE--C----------CEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEE-EeCCEEEEEcCC
Q 045821          246 MASGWRGPAVVV--D----------DALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLV-AIGKTIFVIGKG  312 (352)
Q Consensus       246 ~~~~~~~~~~~~--~----------~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~i~v~gG~  312 (352)
                      ......-..+..  +          +.+++.|+.++ .+.+||.....-..+..-.    ....++. ..+++.++.|+.
T Consensus       159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~h~----~~v~~~~~s~~g~~l~sgs~  233 (343)
T 2xzm_R          159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG-RLKVWNTNFQIRYTFKAHE----SNVNHLSISPNGKYIATGGK  233 (343)
T ss_dssp             TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTS-EEEEEETTTEEEEEEECCS----SCEEEEEECTTSSEEEEEET
T ss_pred             cCCCceeeeeeeccccccccccCCCCCEEEEEcCCC-EEEEEcCCCceeEEEcCcc----ccceEEEECCCCCEEEEEcC
Confidence            111100011111  1          24566676665 8999995432221221111    1111222 235566666665


Q ss_pred             ce-EEEEEcC
Q 045821          313 CS-AVVIDVG  321 (352)
Q Consensus       313 ~~-~~~~d~~  321 (352)
                      +. +.++|+.
T Consensus       234 dg~v~iwd~~  243 (343)
T 2xzm_R          234 DKKLLIWDIL  243 (343)
T ss_dssp             TCEEEEEESS
T ss_pred             CCeEEEEECC
Confidence            54 5578874

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=92.51  E-value=8.7  Score=37.76  Aligned_cols=146  Identities=11%  Similarity=-0.018  Sum_probs=82.2

Q ss_pred             ECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecC--CCCCcceeeeeEE--ECCEEEEEeCCCCCCceEEEeCCCCcEE
Q 045821          118 LGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAA--PMSTARCYFPCGV--LNQKIYCIGGLGDTHSWDVYDPRTNNWK  193 (352)
Q Consensus       118 ~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~--~~~~~r~~~~~~~--~~~~iyv~gG~~~~~~v~~yd~~t~~W~  193 (352)
                      .++.||+.-.      ....++++++....-+.+.  .+..|+   ++++  .++.||+.--... ..|+++++....-+
T Consensus       481 ~~~~LY~tD~------~~~~I~v~~ldG~~~~~l~~~~l~~P~---gIaVDp~~g~LYwtD~g~~-~~I~~~~~dG~~~~  550 (791)
T 3m0c_C          481 IHSNIYWTDS------VLGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIY  550 (791)
T ss_dssp             TTTEEEEEET------TTTEEEEEETTSSSEEEEEECTTCCEE---EEEEETTTTEEEEEECSSS-CEEEEEETTSCCEE
T ss_pred             cCCcEEEEec------CCCeEEEEeCCCCeEEEEEeCCCCCcc---eEEEecCCCCEEEecCCCC-CeEEEEecCCCceE
Confidence            4779999853      3467889998866544442  222332   3333  2589999862211 57888888765444


Q ss_pred             EecCCCCcccceeEEE--ECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCC-cEEEECCEEEEEecCCCC
Q 045821          194 LHTEPNIFTEIEDSFV--MDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRG-PAVVVDDALYVLDQSSGT  270 (352)
Q Consensus       194 ~~~~~~~~~~~~~~~~--~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~-~~~~~~~~l~~~gg~~~~  270 (352)
                      .+..-.. ..-.++++  .+++||+.-..     ...|+++|+....=..+........+. +..+.++.||+.....+ 
T Consensus       551 ~lv~~~l-~~P~GLavD~~~~~LYwaD~~-----~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~-  623 (791)
T 3m0c_C          551 SLVTENI-QWPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINE-  623 (791)
T ss_dssp             EEECSSC-SCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTT-
T ss_pred             EEEeCCC-CCceEEEEecCCCeEEEEeCC-----CCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCC-
Confidence            4332111 11112333  36899998422     237899988654333332111111122 23457889999986554 


Q ss_pred             eEEEEeCCCC
Q 045821          271 KLMMWQKESR  280 (352)
Q Consensus       271 ~v~~yd~~~~  280 (352)
                      .|+++|..++
T Consensus       624 ~I~~~dk~tG  633 (791)
T 3m0c_C          624 AIFSANRLTG  633 (791)
T ss_dssp             EEEEEETTTC
T ss_pred             EEEEEeCCCC
Confidence            8888886554

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=92.40  E-value=8.2  Score=37.18  Aligned_cols=193  Identities=7%  Similarity=-0.047  Sum_probs=98.5

Q ss_pred             ceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECC-EEEEEeCCCC------CCCCCCeEEEEECCCCee--EecC
Q 045821           82 RVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGK-NAYLLGGCGW------SEDATSEVYCYDASMNTW--TDAA  152 (352)
Q Consensus        82 ~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~------~~~~~~~~~~~d~~t~~W--~~~~  152 (352)
                      ...++++|.  .++...... .+   ..+.....-. ++ .||.......      .......++.++..+.+-  ..+.
T Consensus       154 ~~~i~v~dl--~tg~~~~~~-~~---~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~  226 (693)
T 3iuj_A          154 WREIHLMDV--ESKQPLETP-LK---DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVF  226 (693)
T ss_dssp             EEEEEEEET--TTCSEEEEE-EE---EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEE
T ss_pred             eEEEEEEEC--CCCCCCccc-cC---CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEE
Confidence            356788888  887765432 11   1111122223 54 4554432211      012345688888776642  1222


Q ss_pred             CCCC--cceeeeeEEE-CCE-EEEEeCCCCC-CceEEEeCCCC--cEEEecCCCCcccceeEEEECCEEEEEccCCCCCC
Q 045821          153 PMST--ARCYFPCGVL-NQK-IYCIGGLGDT-HSWDVYDPRTN--NWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATS  225 (352)
Q Consensus       153 ~~~~--~r~~~~~~~~-~~~-iyv~gG~~~~-~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~  225 (352)
                      ..+.  +.....+..- +++ |++....... +.++.+|..+.  .|+.+....... .......+++||+.....  ..
T Consensus       227 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~-~~~~~~~g~~l~~~t~~~--~~  303 (693)
T 3iuj_A          227 GAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD-VSLVDNKGSTLYLLTNRD--AP  303 (693)
T ss_dssp             SCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC-EEEEEEETTEEEEEECTT--CT
T ss_pred             ecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce-EEEEeccCCEEEEEECCC--CC
Confidence            2221  2212222222 454 4443332222 68899998765  688776432222 222344578899885432  22


Q ss_pred             ceEEEEEeCCCC---ceeecCCCCCCCCCCcEEEECCEEEEEecCCC-CeEEEEeCCCCceEEcc
Q 045821          226 HVCALVYEPSTD---SWLHADANMASGWRGPAVVVDDALYVLDQSSG-TKLMMWQKESREWSPVG  286 (352)
Q Consensus       226 ~~~i~~yd~~~~---~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~-~~v~~yd~~~~~W~~~~  286 (352)
                      ...++..|..+.   .|+.+.+......  .....++.|++.....+ ..++++|.+++....+.
T Consensus       304 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~  366 (693)
T 3iuj_A          304 NRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVA  366 (693)
T ss_dssp             TCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEEC
T ss_pred             CCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEee
Confidence            347888888763   4887643222221  22345667766544333 47899999877666554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=92.39  E-value=7.3  Score=36.62  Aligned_cols=192  Identities=11%  Similarity=0.036  Sum_probs=95.5

Q ss_pred             CEEEEEeCCCCCCCCCCeEEEEECCCCeeE-ecCC--C--------CCcceeeeeEEECCEEEEEeCCCCCCceEEEeCC
Q 045821          120 KNAYLLGGCGWSEDATSEVYCYDASMNTWT-DAAP--M--------STARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPR  188 (352)
Q Consensus       120 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~-~~~~--~--------~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~  188 (352)
                      ..+|+..-      ....+.++|..+.+-. .++-  +        +.+|.....+..++..+++.-.. ...+.+.|..
T Consensus       256 k~l~v~n~------~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~-~g~v~~vd~~  328 (567)
T 1qks_A          256 KYAIAGAY------WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE-TGKILLVDYT  328 (567)
T ss_dssp             TEEEEEEE------ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT-TTEEEEEETT
T ss_pred             CEEEEEEc------cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC-CCeEEEEecC
Confidence            36776642      2466788898776532 2221  1        12233222222233333332111 1677888887


Q ss_pred             CCcEEEecCCCCcccceeE-EEECCE-EEEEccCCCCCCceEEEEEeCCCCceee-cCC--CCCCCCCCcEEEE--CCEE
Q 045821          189 TNNWKLHTEPNIFTEIEDS-FVMDGK-IYIRCSASAATSHVCALVYEPSTDSWLH-ADA--NMASGWRGPAVVV--DDAL  261 (352)
Q Consensus       189 t~~W~~~~~~~~~~~~~~~-~~~~g~-iyv~GG~~~~~~~~~i~~yd~~~~~W~~-~~~--~~~~~~~~~~~~~--~~~l  261 (352)
                      +.....+...+..+..+.. ..-+|+ +|+..     ...+.+.++|..+++=.. ++.  ..++...+..+..  ++.+
T Consensus       329 ~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~-----~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v  403 (567)
T 1qks_A          329 DLNNLKTTEISAERFLHDGGLDGSHRYFITAA-----NARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPV  403 (567)
T ss_dssp             CSSEEEEEEEECCSSEEEEEECTTSCEEEEEE-----GGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEE
T ss_pred             CCccceeeeeeccccccCceECCCCCEEEEEe-----CCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcE
Confidence            7655444433333332322 223555 44442     123468889999876432 111  1223223333333  3677


Q ss_pred             EEEecCCCCeEEEEeCCCCc-----eEEccCCCCCcCCCCce-EEEeCCEEEEEc--C-----CceEEEEEcCCc
Q 045821          262 YVLDQSSGTKLMMWQKESRE-----WSPVGRLSTLLTRPPCK-LVAIGKTIFVIG--K-----GCSAVVIDVGNI  323 (352)
Q Consensus       262 ~~~gg~~~~~v~~yd~~~~~-----W~~~~~~~~~~~~~~~~-~~~~~~~i~v~g--G-----~~~~~~~d~~~~  323 (352)
                      |+.+......|.++|..+..     |+.+..++..-....+. ...-+..+|+-.  +     ..++.+||+.+.
T Consensus       404 ~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          404 WATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             EEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence            77765443489999887633     88776554321111111 112245788844  2     236889999875

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=92.37  E-value=5.8  Score=35.38  Aligned_cols=146  Identities=10%  Similarity=-0.036  Sum_probs=80.5

Q ss_pred             ECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecC--CCCCcceeeeeEE--ECCEEEEEeCCCCCCceEEEeCCCCcEE
Q 045821          118 LGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAA--PMSTARCYFPCGV--LNQKIYCIGGLGDTHSWDVYDPRTNNWK  193 (352)
Q Consensus       118 ~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~--~~~~~r~~~~~~~--~~~~iyv~gG~~~~~~v~~yd~~t~~W~  193 (352)
                      .++.||+...      ....++++|+....-..+.  .+..|+   ++++  .++.||+.-.... ..++++++....=+
T Consensus       169 ~~~~lY~~d~------~~~~I~~~~~~g~~~~~l~~~~~~~P~---~iavdp~~g~ly~td~~~~-~~I~~~~~dG~~~~  238 (400)
T 3p5b_L          169 IHSNIYWTDS------VLGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIY  238 (400)
T ss_dssp             TTTEEEEEET------TTTEEEEECTTTCSEEEEEECSSCCEE---EEEEETTTTEEEEEECSSS-CCEEEEETTSCSCE
T ss_pred             cCCceEEEEC------CCCeEEEEeCCCCceEEEEeCCCCCcc---eEEEecccCeEEEEeCCCC-CEEEEEeCCCCccE
Confidence            3789999853      2357888888766544332  222332   3333  2688998763211 57888988754333


Q ss_pred             EecCCCCcccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCC-cEEEECCEEEEEecCCCC
Q 045821          194 LHTEPNIFTEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRG-PAVVVDDALYVLDQSSGT  270 (352)
Q Consensus       194 ~~~~~~~~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~-~~~~~~~~l~~~gg~~~~  270 (352)
                      .+..-. ...-...++-  +++||+.-..     ...|+++|.....-+.+........+. ..++.++.||+..-.. .
T Consensus       239 ~~~~~~-l~~P~glavd~~~~~lY~aD~~-----~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~-~  311 (400)
T 3p5b_L          239 SLVTEN-IQWPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIIN-E  311 (400)
T ss_dssp             EEECSS-CSCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSS-C
T ss_pred             EEEECC-CCceEEEEEEeCCCEEEEEECC-----CCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCC-C
Confidence            332111 1111223333  6899998422     247899998654333332111111111 2345788999998443 3


Q ss_pred             eEEEEeCCCC
Q 045821          271 KLMMWQKESR  280 (352)
Q Consensus       271 ~v~~yd~~~~  280 (352)
                      .|+++|..++
T Consensus       312 ~V~~~~~~~G  321 (400)
T 3p5b_L          312 AIFSANRLTG  321 (400)
T ss_dssp             SEEEEESSSC
T ss_pred             eEEEEEcCCC
Confidence            8999996554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=92.37  E-value=8.3  Score=37.17  Aligned_cols=146  Identities=6%  Similarity=-0.093  Sum_probs=82.2

Q ss_pred             CCeEEEEECCC------C--eeEecCCCCCcceeeeeEEECCEEEEEeCCCCC-CceEEEeCCCC---cEEEecCCCCcc
Q 045821          135 TSEVYCYDASM------N--TWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDT-HSWDVYDPRTN---NWKLHTEPNIFT  202 (352)
Q Consensus       135 ~~~~~~~d~~t------~--~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~-~~v~~yd~~t~---~W~~~~~~~~~~  202 (352)
                      ..+++.+|..+      .  .+..+........ .....-++.+|+.+..+.. ..++.+|..+.   .|+.+.+.....
T Consensus       258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~  336 (710)
T 2xdw_A          258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD  336 (710)
T ss_dssp             CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC
T ss_pred             ccEEEEEECcccccccCCccceEEeeCCCCcEE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCC
Confidence            57899999876      4  4666654322222 2223346788888765443 67899998875   588875432222


Q ss_pred             cceeEEEE-CCEEEEEccCCCCCCceEEEEEeCCCCc-eeecCCCCCCCCCCcEEEE--CC-EEEEEe-cCCC-CeEEEE
Q 045821          203 EIEDSFVM-DGKIYIRCSASAATSHVCALVYEPSTDS-WLHADANMASGWRGPAVVV--DD-ALYVLD-QSSG-TKLMMW  275 (352)
Q Consensus       203 ~~~~~~~~-~g~iyv~GG~~~~~~~~~i~~yd~~~~~-W~~~~~~~~~~~~~~~~~~--~~-~l~~~g-g~~~-~~v~~y  275 (352)
                      ........ ++.+++....+   ....++.+|+.+++ ...+..+   ......+..  ++ .+++.. +... ..++.|
T Consensus       337 ~~~~~~~~~~~~lv~~~~~~---g~~~l~~~~~~~g~~~~~l~~~---~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~  410 (710)
T 2xdw_A          337 VLEWVACVRSNFLVLCYLHD---VKNTLQLHDLATGALLKIFPLE---VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHC  410 (710)
T ss_dssp             EEEEEEEETTTEEEEEEEET---TEEEEEEEETTTCCEEEEECCC---SSEEEEEECCTTCSEEEEEEECSSCCCEEEEE
T ss_pred             eEEEEEEEcCCEEEEEEEEC---CEEEEEEEECCCCCEEEecCCC---CceEEEEecCCCCCEEEEEEeCCCCCCEEEEE
Confidence            22234445 67777764332   23468889985554 4555432   111111222  33 555442 3222 589999


Q ss_pred             eCCCCc--eEEccC
Q 045821          276 QKESRE--WSPVGR  287 (352)
Q Consensus       276 d~~~~~--W~~~~~  287 (352)
                      |..+++  .+.+..
T Consensus       411 d~~tg~~~~~~l~~  424 (710)
T 2xdw_A          411 DLTKEELEPRVFRE  424 (710)
T ss_dssp             ETTSSSCCCEEEEE
T ss_pred             ECCCCccceEEeee
Confidence            998877  665543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=92.36  E-value=4.7  Score=35.82  Aligned_cols=108  Identities=10%  Similarity=0.070  Sum_probs=57.0

Q ss_pred             EEEEEeCCCCCCceEEEeCCCCcE-----EEecCCCCc-----------ccceeEEEECCEEEEEccCCCCCCceEEEEE
Q 045821          169 KIYCIGGLGDTHSWDVYDPRTNNW-----KLHTEPNIF-----------TEIEDSFVMDGKIYIRCSASAATSHVCALVY  232 (352)
Q Consensus       169 ~iyv~gG~~~~~~v~~yd~~t~~W-----~~~~~~~~~-----------~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~y  232 (352)
                      .+++.|+.+  ..+.+||..+..-     ..+......           ........-++++++.|+.      ..+..|
T Consensus       240 ~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~------~~v~iw  311 (447)
T 3dw8_B          240 NTFVYSSSK--GTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY------LSVKVW  311 (447)
T ss_dssp             TEEEEEETT--SCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES------SEEEEE
T ss_pred             cEEEEEeCC--CeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC------CeEEEE
Confidence            677777765  6789999988763     333211110           1111112226666666543      258888


Q ss_pred             eCCC-Cce-eecCCCCCCC--------------CCCcEEEECCEEEEEecCCCCeEEEEeCCCCceEEc
Q 045821          233 EPST-DSW-LHADANMASG--------------WRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPV  285 (352)
Q Consensus       233 d~~~-~~W-~~~~~~~~~~--------------~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~  285 (352)
                      |..+ .+- ..+.......              ........+++.++.|+.++ .+.+||..+++-..+
T Consensus       312 d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg-~v~iwd~~~~~~~~~  379 (447)
T 3dw8_B          312 DLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNN-FFRMFDRNTKRDITL  379 (447)
T ss_dssp             ETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTT-EEEEEETTTCCEEEE
T ss_pred             eCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCC-EEEEEEcCCCcceee
Confidence            8865 321 1111100000              00012234666667777766 899999998876554

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=92.23  E-value=7.8  Score=36.56  Aligned_cols=151  Identities=11%  Similarity=0.050  Sum_probs=79.7

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEe-cCCC--C-Cccee--eeeEEE-CCEEEEEeCCCCCCceEEEeCCCCc
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTD-AAPM--S-TARCY--FPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNN  191 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~-~~~~--~-~~r~~--~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~  191 (352)
                      ++.+++.|+.+      ..+.+||..+++... +...  . ..+..  .+++.. +++.++.++.+  ..+.++|..+.+
T Consensus       201 dg~~las~s~D------~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D--~~v~lWd~~~~~  272 (611)
T 1nr0_A          201 DGSLFASTGGD------GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD--KTIKIWNVATLK  272 (611)
T ss_dssp             TSSEEEEEETT------SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT--SEEEEEETTTTE
T ss_pred             CCCEEEEEECC------CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC--CeEEEEeCCCCc
Confidence            56666667643      457888987765432 2110  0 01111  112222 56677777765  688999999877


Q ss_pred             EEEecCCCCcc-cceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEE--EECCEEEEEecCC
Q 045821          192 WKLHTEPNIFT-EIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAV--VVDDALYVLDQSS  268 (352)
Q Consensus       192 W~~~~~~~~~~-~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~--~~~~~l~~~gg~~  268 (352)
                      ....-...... .....+..++..++.++.++     .+..+|+.+.+-...-.  .+...-..+  .-+++.++.++.+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~-----~i~~~~~~~~~~~~~~~--gh~~~v~~l~~spdg~~l~s~s~D  345 (611)
T 1nr0_A          273 VEKTIPVGTRIEDQQLGIIWTKQALVSISANG-----FINFVNPELGSIDQVRY--GHNKAITALSSSADGKTLFSADAE  345 (611)
T ss_dssp             EEEEEECCSSGGGCEEEEEECSSCEEEEETTC-----CEEEEETTTTEEEEEEC--CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eeeeecCCCCccceeEEEEEcCCEEEEEeCCC-----cEEEEeCCCCCcceEEc--CCCCCEEEEEEeCCCCEEEEEeCC
Confidence            64432121111 11223344666666655442     46677776654322211  111111112  2367777777776


Q ss_pred             CCeEEEEeCCCCceEEc
Q 045821          269 GTKLMMWQKESREWSPV  285 (352)
Q Consensus       269 ~~~v~~yd~~~~~W~~~  285 (352)
                      + .+.+||..+......
T Consensus       346 ~-~v~~Wd~~~~~~~~~  361 (611)
T 1nr0_A          346 G-HINSWDISTGISNRV  361 (611)
T ss_dssp             S-CEEEEETTTCCEEEC
T ss_pred             C-cEEEEECCCCceeee
Confidence            6 899999988766543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=92.20  E-value=2.7  Score=40.72  Aligned_cols=149  Identities=10%  Similarity=-0.032  Sum_probs=79.1

Q ss_pred             ECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCC--CCCcceeeeeEE--ECCEEEEEeCCCCCCceEEEeCCCCcEE
Q 045821          118 LGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAP--MSTARCYFPCGV--LNQKIYCIGGLGDTHSWDVYDPRTNNWK  193 (352)
Q Consensus       118 ~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~--~~~~r~~~~~~~--~~~~iyv~gG~~~~~~v~~yd~~t~~W~  193 (352)
                      .++.||+.-.      ....+.++++....-..+..  +..|+   .+++  .++.||+..... ...++++++....-+
T Consensus       463 ~~g~LY~tD~------~~~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~~~-~~~I~~~~~dG~~~~  532 (699)
T 1n7d_A          463 IHSNIYWTDS------VLGTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDWGT-PAKIKKGGLNGVDIY  532 (699)
T ss_dssp             SSSBCEECCT------TTSCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCCSS-SCCEEBCCSSSCCCC
T ss_pred             eCCcEEEEec------cCCeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEcccCC-CCeEEEEeCCCCCee
Confidence            4678888632      24568888887665444322  22232   2232  257888765211 156788877644322


Q ss_pred             EecCCCCcccceeEEE--ECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCC-CCCCCcEEEECCEEEEEecCCCC
Q 045821          194 LHTEPNIFTEIEDSFV--MDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMA-SGWRGPAVVVDDALYVLDQSSGT  270 (352)
Q Consensus       194 ~~~~~~~~~~~~~~~~--~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~-~~~~~~~~~~~~~l~~~gg~~~~  270 (352)
                      .+.... ...-.++++  .+++||+.-..     ...|+++|+....-+.+..... ...-....+.++.||+..... .
T Consensus       533 ~l~~~~-l~~PnGlavd~~~~~LY~aD~~-----~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~-~  605 (699)
T 1n7d_A          533 SLVTEN-IQWPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIIN-E  605 (699)
T ss_dssp             EESCSS-CSSCCCEEECTTTCCEEEEETT-----TTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTT-T
T ss_pred             EEEeCC-CCCccEEEEeccCCEEEEEecC-----CCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCC-C
Confidence            222111 111112333  25789998422     2368899886543333322111 111122345678999987443 4


Q ss_pred             eEEEEeCCCCceE
Q 045821          271 KLMMWQKESREWS  283 (352)
Q Consensus       271 ~v~~yd~~~~~W~  283 (352)
                      .|.++|+.+++-.
T Consensus       606 ~V~~~d~~~G~~~  618 (699)
T 1n7d_A          606 AIFSANRLTGSDV  618 (699)
T ss_dssp             CEEEEETTTEEEE
T ss_pred             eEEEEEccCCCce
Confidence            8999998765543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=92.02  E-value=2  Score=40.24  Aligned_cols=139  Identities=7%  Similarity=0.016  Sum_probs=74.9

Q ss_pred             CCeEEEEEC--CCCeeEecCCCCCcceeeeeEEECC-EEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEEC
Q 045821          135 TSEVYCYDA--SMNTWTDAAPMSTARCYFPCGVLNQ-KIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMD  211 (352)
Q Consensus       135 ~~~~~~~d~--~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~  211 (352)
                      ...+|..+.  ....- .+......+  ......++ .++++.+..  ..+.+||..+++-+.+...+.   ...+..-+
T Consensus        89 ~~~l~~~~~~~~g~~~-~l~~~~~~~--~~~~s~dg~~~~~~s~~~--~~~~l~d~~~g~~~~l~~~~~---~~~~~spD  160 (582)
T 3o4h_A           89 QHALFKVNTSRPGEEQ-RLEAVKPMR--ILSGVDTGEAVVFTGATE--DRVALYALDGGGLRELARLPG---FGFVSDIR  160 (582)
T ss_dssp             CEEEEEEETTSTTCCE-ECTTSCSBE--EEEEEECSSCEEEEEECS--SCEEEEEEETTEEEEEEEESS---CEEEEEEE
T ss_pred             ceEEEEEeccCCCccc-cccCCCCce--eeeeCCCCCeEEEEecCC--CCceEEEccCCcEEEeecCCC---ceEEECCC
Confidence            346777777  43322 333333222  22333443 444444433  344588998887776653222   23334457


Q ss_pred             CEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCC-CeEEEEeCCCCceE
Q 045821          212 GKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSG-TKLMMWQKESREWS  283 (352)
Q Consensus       212 g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~-~~v~~yd~~~~~W~  283 (352)
                      |+..++++... .....++.+|..+.+++.+.... ......+..-+|+.++.+...+ ..++++|.++++..
T Consensus       161 G~~la~~~~~~-~~~~~i~~~d~~~g~~~~l~~~~-~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          161 GDLIAGLGFFG-GGRVSLFTSNLSSGGLRVFDSGE-GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             TTEEEEEEEEE-TTEEEEEEEETTTCCCEEECCSS-CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             CCEEEEEEEcC-CCCeEEEEEcCCCCCceEeecCC-CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence            76655543332 22246999999988888774321 1111122334666554444333 47999999998877

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=91.95  E-value=2.5  Score=36.91  Aligned_cols=66  Identities=8%  Similarity=-0.076  Sum_probs=33.4

Q ss_pred             EEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECC-EEEEEeCCCCCCCCCCeEEEEECC-CCeeE
Q 045821           74 FCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGK-NAYLLGGCGWSEDATSEVYCYDAS-MNTWT  149 (352)
Q Consensus        74 ~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~d~~-t~~W~  149 (352)
                      +|+....+....+.+|+  .++..+.+...+........+....-++ .+|+...     .   .+.+||.. +++..
T Consensus         7 vg~~~~~~~i~~~~~d~--~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~-----~---~v~~~~~~~~g~~~   74 (365)
T 1jof_A            7 IGTWTPPGAIFTVQFDD--EKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-----K---KWSSFAVKSPTEIV   74 (365)
T ss_dssp             EEESSSSCEEEEEEEET--TTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-----T---EEEEEEEEETTEEE
T ss_pred             EEEccCCCcEEEEEEEC--CCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEcc-----c---eEEEEEECCCCCEE
Confidence            45553333456677788  8888776654210001112222222244 4665542     1   67888875 66543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=91.91  E-value=3.5  Score=40.14  Aligned_cols=146  Identities=9%  Similarity=0.053  Sum_probs=82.1

Q ss_pred             CCeEEEEECCCC--e-eEecCCCCCcceeeeeEEECCEEEEEeCCCCC-CceEEEeCCC--CcEEEecCCCCcccceeEE
Q 045821          135 TSEVYCYDASMN--T-WTDAAPMSTARCYFPCGVLNQKIYCIGGLGDT-HSWDVYDPRT--NNWKLHTEPNIFTEIEDSF  208 (352)
Q Consensus       135 ~~~~~~~d~~t~--~-W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~-~~v~~yd~~t--~~W~~~~~~~~~~~~~~~~  208 (352)
                      .++++++|..+.  + ++.+.......... ....++.+|+....+.. ..++.+|..+  ..|+.+-+-... ......
T Consensus       293 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~l~~~~  370 (741)
T 1yr2_A          293 VNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKD-NLESVG  370 (741)
T ss_dssp             CCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSS-EEEEEE
T ss_pred             cceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCC-eEEEEE
Confidence            568889998876  6 77765433222222 23456788887654432 6789999887  579887532221 122234


Q ss_pred             EECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEE--ECC-EEEEEe-cCCC-CeEEEEeCCCCceE
Q 045821          209 VMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVV--VDD-ALYVLD-QSSG-TKLMMWQKESREWS  283 (352)
Q Consensus       209 ~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~--~~~-~l~~~g-g~~~-~~v~~yd~~~~~W~  283 (352)
                      ..++++++....+   ....++.+|.....-..+..+.  ......+.  -++ .|++.. +... ..++.||..+++.+
T Consensus       371 ~~~~~lv~~~~~d---g~~~l~~~~~~g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~  445 (741)
T 1yr2_A          371 IAGNRLFASYIHD---AKSQVLAFDLDGKPAGAVSLPG--IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTT  445 (741)
T ss_dssp             EEBTEEEEEEEET---TEEEEEEEETTSCEEEECBCSS--SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEE
T ss_pred             EECCEEEEEEEEC---CEEEEEEEeCCCCceeeccCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence            4478887774332   2346888887555444443211  11111121  133 354432 2221 47999999998877


Q ss_pred             EccC
Q 045821          284 PVGR  287 (352)
Q Consensus       284 ~~~~  287 (352)
                      .+..
T Consensus       446 ~l~~  449 (741)
T 1yr2_A          446 PWEP  449 (741)
T ss_dssp             ECSC
T ss_pred             EEec
Confidence            6654

>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}

Probab=91.90  E-value=4  Score=32.47  Aligned_cols=142  Identities=10%  Similarity=0.066  Sum_probs=76.6

Q ss_pred             EEEECCEEEEEeCCCCCCCCCCeEEEEECCC---CeeEec----CCCCCcceeeeeEE--ECCEEEEEeCCCCCCceEEE
Q 045821          115 FEVLGKNAYLLGGCGWSEDATSEVYCYDASM---NTWTDA----APMSTARCYFPCGV--LNQKIYCIGGLGDTHSWDVY  185 (352)
Q Consensus       115 ~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t---~~W~~~----~~~~~~r~~~~~~~--~~~~iyv~gG~~~~~~v~~y  185 (352)
                      +..+.+++|+|-|        ..+|+++...   +-=..+    +.+|.   ...++.  .++++|++-|    +.+++|
T Consensus        11 ~~~~~g~~~fFkg--------~~~w~~~~~~~~~gyP~~I~~~w~glP~---~iDAa~~~~~g~~yfFkg----~~yw~~   75 (196)
T 3c7x_A           11 VAMLRGEMFVFKE--------RWFWRVRNNQVMDGYPMPIGQFWRGLPA---SINTAYERKDGKFVFFKG----DKHWVF   75 (196)
T ss_dssp             EEEETTEEEEEET--------TEEEEEETTEECTTCSEEHHHHSTTCCS---SCCEEEECTTSCEEEEET----TEEEEE
T ss_pred             EEEcCCEEEEEEC--------CEEEEEECCccCCCCceEhhHhccCCCC---CccEEEEeCCCcEEEecC----CEEEEE
Confidence            4467899999987        5567775431   000111    12232   222232  3688999998    778999


Q ss_pred             eCCCCc---EEEecCCC--Cc-ccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCceee-----cCCCCCCCCC-
Q 045821          186 DPRTNN---WKLHTEPN--IF-TEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTDSWLH-----ADANMASGWR-  251 (352)
Q Consensus       186 d~~t~~---W~~~~~~~--~~-~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~-----~~~~~~~~~~-  251 (352)
                      +..+..   =+.|...-  .+ ....++...  ++++|.+-|..       .++||..+++-..     +..-+..+.. 
T Consensus        76 ~~~~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG~~-------yw~yd~~~~~v~~gyPk~i~~~~gip~~i  148 (196)
T 3c7x_A           76 DEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRGNK-------YYRFNEELRAVDSEYPKNIKVWEGIPESP  148 (196)
T ss_dssp             ETTEECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEETTE-------EEEEETTTTEECTTCSEEGGGSBTCCSSC
T ss_pred             eCCcccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEECCE-------EEEEeCCcccccCCCCccHHHCCCcCCCc
Confidence            864321   01222211  11 112234433  68999995543       7899987653221     1100011111 


Q ss_pred             CcEEEE-CC-EEEEEecCCCCeEEEEeCCCCc
Q 045821          252 GPAVVV-DD-ALYVLDQSSGTKLMMWQKESRE  281 (352)
Q Consensus       252 ~~~~~~-~~-~l~~~gg~~~~~v~~yd~~~~~  281 (352)
                      -+++.. ++ ++|++-|.   ..++||..+++
T Consensus       149 daAf~~~~~~~~YfFkg~---~y~r~d~~~~~  177 (196)
T 3c7x_A          149 RGSFMGSDEVFTYFYKGN---KYWKFNNQKLK  177 (196)
T ss_dssp             SEEEECTTSSEEEEEETT---EEEEEETTTTE
T ss_pred             ceeEEecCCCEEEEEECC---EEEEEECCcce
Confidence            123333 44 89999886   89999988764

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=91.74  E-value=5.2  Score=33.48  Aligned_cols=228  Identities=12%  Similarity=0.041  Sum_probs=104.3

Q ss_pred             EEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-CCEEEEEeCCCCCCCCCCeEEEEECCCCeeE
Q 045821           71 IYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-GKNAYLLGGCGWSEDATSEVYCYDASMNTWT  149 (352)
Q Consensus        71 l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~  149 (352)
                      ++++|..   +  .+.++|.  .++.....-.+..  ....-.+++.. ++..++.|+.+      ..+.+||..+++-.
T Consensus        38 ~lAvg~D---~--tV~iWd~--~tg~~~~~~~~~~--~~~~V~~v~~~~~~~~l~sgs~D------g~v~iw~~~~~~~~  102 (318)
T 4ggc_A           38 VLAVALD---N--SVYLWSA--SSGDILQLLQMEQ--PGEYISSVAWIKEGNYLAVGTSS------AEVQLWDVQQQKRL  102 (318)
T ss_dssp             EEEEEET---T--EEEEEET--TTCCEEEEEECCS--TTCCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEE
T ss_pred             EEEEEeC---C--EEEEEEC--CCCCEEEEEEecC--CCCeEEEEEECCCCCEEEEEECC------CcEEEeecCCceeE
Confidence            5566542   3  3455588  7777655444331  11111222222 55666677643      46888999888643


Q ss_pred             ecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecC-CCCcccceeEEEECCEEEEEccCCCCCCceE
Q 045821          150 DAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTE-PNIFTEIEDSFVMDGKIYIRCSASAATSHVC  228 (352)
Q Consensus       150 ~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~-~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~  228 (352)
                      ........+  ......++.+.+.|+.+  ..+..++..+........ .............+++.++.|+.++     .
T Consensus       103 ~~~~~h~~~--~~~~~~~~~~l~s~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-----~  173 (318)
T 4ggc_A          103 RNMTSHSAR--VGSLSWNSYILSSGSRS--GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN-----L  173 (318)
T ss_dssp             EEEECCSSC--EEEEEEETTEEEEEETT--SEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS-----C
T ss_pred             EEecCccce--EEEeecCCCEEEEEecC--CceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCc-----c
Confidence            221111111  12223344555555544  445556555543322110 1111111122233566666655543     4


Q ss_pred             EEEEeCCCCceeecCCCCCCCCCCc--EEE---ECC-EEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEe
Q 045821          229 ALVYEPSTDSWLHADANMASGWRGP--AVV---VDD-ALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAI  302 (352)
Q Consensus       229 i~~yd~~~~~W~~~~~~~~~~~~~~--~~~---~~~-~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~  302 (352)
                      +..||..+.+-..............  .+.   .++ .+.+.+|.....+.+||.....-.........  .........
T Consensus       174 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~--v~~~~~~~~  251 (318)
T 4ggc_A          174 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ--VCSILWSPH  251 (318)
T ss_dssp             EEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSC--EEEEEEETT
T ss_pred             eeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceee--eeeeeeccc
Confidence            6777876543221111001111111  111   123 34444555445888999887765544322221  111222233


Q ss_pred             CCEEEEEcCC-c-eEEEEEcCCcc
Q 045821          303 GKTIFVIGKG-C-SAVVIDVGNIG  324 (352)
Q Consensus       303 ~~~i~v~gG~-~-~~~~~d~~~~~  324 (352)
                      ++.+++.+|. + .+.+||..+..
T Consensus       252 ~~~~~~~sg~~d~~i~iwd~~~~~  275 (318)
T 4ggc_A          252 YKELISGHGFAQNQLVIWKYPTMA  275 (318)
T ss_dssp             TTEEEEEECTTTCCEEEEETTTCC
T ss_pred             ccceEEEEEcCCCEEEEEECCCCc
Confidence            5666666553 2 46689987654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=91.73  E-value=12  Score=37.85  Aligned_cols=191  Identities=9%  Similarity=-0.028  Sum_probs=93.7

Q ss_pred             CEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCee
Q 045821           69 TWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTW  148 (352)
Q Consensus        69 ~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W  148 (352)
                      +.+++.+.  ..+...+|.++.  .+.....+....     .........++..++++.       ...++.+|..+.+.
T Consensus       214 d~l~~~~~--~dg~~~l~~~~~--~g~~~~~l~~~~-----~~~~~~~SpDG~~la~~~-------~~~i~~~d~~~~~l  277 (1045)
T 1k32_A          214 HRIYFITD--IDGFGQIYSTDL--DGKDLRKHTSFT-----DYYPRHLNTDGRRILFSK-------GGSIYIFNPDTEKI  277 (1045)
T ss_dssp             TEEEEEEC--TTSSCEEEEEET--TSCSCEECCCCC-----SSCEEEEEESSSCEEEEE-------TTEEEEECTTTCCE
T ss_pred             CEEEEEEe--ccCceEEEEEeC--CCCcceEecCCC-----CcceeeEcCCCCEEEEEe-------CCEEEEecCCceEe
Confidence            34554433  224456777776  555544444322     111223334555444431       24678888755544


Q ss_pred             EecCCCCC----------cceeeeeEE-ECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEE
Q 045821          149 TDAAPMST----------ARCYFPCGV-LNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIR  217 (352)
Q Consensus       149 ~~~~~~~~----------~r~~~~~~~-~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~  217 (352)
                      ..+..-..          ......... -+++..+++.   ...++.++..+..-..+...+.......+.. +|+.+++
T Consensus       278 ~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~  353 (1045)
T 1k32_A          278 EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS---RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIH  353 (1045)
T ss_dssp             EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE---TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEE
T ss_pred             eeeccCcccccccccccccccceeeecCCCCCEEEEEE---cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEE
Confidence            43332100          011111122 2443223332   1567888888776655432221111222233 6654444


Q ss_pred             ccCCCCCCceEEE-EEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceEEcc
Q 045821          218 CSASAATSHVCAL-VYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVG  286 (352)
Q Consensus       218 GG~~~~~~~~~i~-~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~  286 (352)
                      ++.     ...++ .+|..+.+-..+.. ........+..-+++.++++...+ .+++||..+++-..+.
T Consensus       354 ~s~-----~~~l~~~~d~~~~~~~~l~~-~~~~~~~~~~SpDG~~la~~~~~~-~v~~~d~~tg~~~~~~  416 (1045)
T 1k32_A          354 GTR-----EGDFLGIYDYRTGKAEKFEE-NLGNVFAMGVDRNGKFAVVANDRF-EIMTVDLETGKPTVIE  416 (1045)
T ss_dssp             EET-----TEEEEEEEETTTCCEEECCC-CCCSEEEEEECTTSSEEEEEETTS-EEEEEETTTCCEEEEE
T ss_pred             EEC-----CCceEEEEECCCCCceEecC-CccceeeeEECCCCCEEEEECCCC-eEEEEECCCCceEEec
Confidence            332     24788 89988877666541 111111112233666666665554 8999999988876664

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=91.62  E-value=5.7  Score=33.76  Aligned_cols=185  Identities=6%  Similarity=-0.023  Sum_probs=83.0

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE-------CCEEEEEeCCCCCCceEEEeCCCCc
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-------NQKIYCIGGLGDTHSWDVYDPRTNN  191 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-------~~~iyv~gG~~~~~~v~~yd~~t~~  191 (352)
                      ++.+++.|+.+      ..+.+||.....-..+......-  ..+...       ++..++.|+.+  ..+..||..+.+
T Consensus       118 ~~~~l~s~s~D------~~i~vwd~~~~~~~~~~~h~~~v--~~~~~~~~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~  187 (319)
T 3frx_A          118 KASMIISGSRD------KTIKVWTIKGQCLATLLGHNDWV--SQVRVVPNEKADDDSVTIISAGND--KMVKAWNLNQFQ  187 (319)
T ss_dssp             TSCEEEEEETT------SCEEEEETTSCEEEEECCCSSCE--EEEEECCC------CCEEEEEETT--SCEEEEETTTTE
T ss_pred             CCCEEEEEeCC------CeEEEEECCCCeEEEEeccCCcE--EEEEEccCCCCCCCccEEEEEeCC--CEEEEEECCcch
Confidence            45566666543      34777887655433332111110  111111       23355556554  678899988765


Q ss_pred             EEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceee-cCCCCCCCCCCcEEEECCEEEEEecCCCC
Q 045821          192 WKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLH-ADANMASGWRGPAVVVDDALYVLDQSSGT  270 (352)
Q Consensus       192 W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~l~~~gg~~~~  270 (352)
                      -...-.-........+..-++++++.|+.++     .+..||..+.+-.. +..  .......+...++.++..+...  
T Consensus       188 ~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~la~~~~~--  258 (319)
T 3frx_A          188 IEADFIGHNSNINTLTASPDGTLIASAGKDG-----EIMLWNLAAKKAMYTLSA--QDEVFSLAFSPNRYWLAAATAT--  258 (319)
T ss_dssp             EEEEECCCCSCEEEEEECTTSSEEEEEETTC-----EEEEEETTTTEEEEEEEC--CSCEEEEEECSSSSEEEEEETT--
T ss_pred             hheeecCCCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCcEEEEecC--CCcEEEEEEcCCCCEEEEEcCC--
Confidence            3321110111111112223677777766553     57788887654321 111  0110111122355555554433  


Q ss_pred             eEEEEeCCCCce-EEccC-CCCCc---CCCCceE-EEeCCEEEEEcCCce-EEEEEcCC
Q 045821          271 KLMMWQKESREW-SPVGR-LSTLL---TRPPCKL-VAIGKTIFVIGKGCS-AVVIDVGN  322 (352)
Q Consensus       271 ~v~~yd~~~~~W-~~~~~-~~~~~---~~~~~~~-~~~~~~i~v~gG~~~-~~~~d~~~  322 (352)
                      .+.+|+.+...- ..+.. .....   .....++ ...+++.++.|+.+. +.++|+.+
T Consensus       259 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          259 GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence            577777665432 22211 11000   0011122 224667777776664 55777654

>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1

Probab=91.37  E-value=5  Score=32.54  Aligned_cols=138  Identities=12%  Similarity=0.163  Sum_probs=75.5

Q ss_pred             ECCEEEEEeCCCCCCceEEEeCCCCcE--EEecC-CCC-cccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceee
Q 045821          166 LNQKIYCIGGLGDTHSWDVYDPRTNNW--KLHTE-PNI-FTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLH  241 (352)
Q Consensus       166 ~~~~iyv~gG~~~~~~v~~yd~~t~~W--~~~~~-~~~-~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~  241 (352)
                      .++++|++-|    ..+++++......  ..|.. .+. +...-++...+|++|++-|..       +|+|+..++. +.
T Consensus        27 ~~g~~yfFkg----~~~Wr~~~~~~~~~p~~Is~~wpgLP~~IDAA~~~~~~~yfFkG~~-------yw~~~~~~~~-~~   94 (219)
T 1hxn_A           27 NHGATYVFSG----SHYWRLDTNRDGWHSWPIAHQWPQGPSTVDAAFSWEDKLYLIQDTK-------VYVFLTKGGY-TL   94 (219)
T ss_dssp             TTSCEEEEET----TEEEESSSSSCTTCCEEGGGTCTTSCSSCSEEEEETTEEEEEETTE-------EEEEECSSSC-EE
T ss_pred             CCCcEEEEeC----CEEEEEcCCCCCCCceEhhhhccCCCCCccEEEEECCcEEEecCCE-------EEEEeCCCCc-ee
Confidence            4789999998    6788887654322  22221 111 122234556699999995543       8899865321 11


Q ss_pred             cCC---------CCCCC--C-CCcEEE---ECCEEEEEecCCCCeEEEEeCCC---CceEEccCCCCCcCCCCceEEE--
Q 045821          242 ADA---------NMASG--W-RGPAVV---VDDALYVLDQSSGTKLMMWQKES---REWSPVGRLSTLLTRPPCKLVA--  301 (352)
Q Consensus       242 ~~~---------~~~~~--~-~~~~~~---~~~~l~~~gg~~~~~v~~yd~~~---~~W~~~~~~~~~~~~~~~~~~~--  301 (352)
                      .+.         ..+..  . .--++.   .++++|++-|.   ..|+||..+   ..|...+.+|.   ....++..  
T Consensus        95 ~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG~---~ywr~d~~~~P~~i~~~~~g~p~---~vdAa~~~~~  168 (219)
T 1hxn_A           95 VNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGR---RLWWLDLKSGAQATWTELPWPHE---KVDGALCMEK  168 (219)
T ss_dssp             CTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEETT---EEEEEEGGGGGGCCCEEECCSCS---CCSEEEEESS
T ss_pred             cCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeCC---EEEEEeCCCCceEhhhcCCCCCC---CcCEEEEccc
Confidence            110         01111  0 122332   26899999886   789999764   23433333322   22233331  


Q ss_pred             ---------eCCEEEEEcCCceEEEEEcCC
Q 045821          302 ---------IGKTIFVIGKGCSAVVIDVGN  322 (352)
Q Consensus       302 ---------~~~~i~v~gG~~~~~~~d~~~  322 (352)
                               .++.+|++-|. ..+-||..+
T Consensus       169 ~~~~~~~~~~~~~~YFFkg~-~y~r~~~~~  197 (219)
T 1hxn_A          169 PLGPNSCSTSGPNLYLIHGP-NLYCYRHVD  197 (219)
T ss_dssp             CSSSCCSCSSSCEEEEEETT-EEEEESSHH
T ss_pred             cccccceeccCCeEEEEECC-EEEEEeCCc
Confidence                     35689999886 355566543

>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A

Probab=91.32  E-value=5  Score=32.49  Aligned_cols=144  Identities=12%  Similarity=0.091  Sum_probs=76.9

Q ss_pred             EEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCe-e--EecC----CCCCcceeeeeEEE--CCEEEEEeCCCCCCceEE
Q 045821          114 GFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNT-W--TDAA----PMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDV  184 (352)
Q Consensus       114 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~-W--~~~~----~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~  184 (352)
                      ++....+++|+|-|        ..+|+++..... .  ..+.    .+|. .. -++...  ++++|++-|    +.+++
T Consensus        35 Ai~~~~g~~~fFkg--------~~~Wr~~~~~~~~~~P~~I~~~wp~lp~-~I-DAA~~~~~~~k~yfFkG----~~yW~  100 (218)
T 1gen_A           35 GIAQIRGEIFFFKD--------RFIWRTVTPRDKPMGPLLVATFWPELPE-KI-DAVYEAPQEEKAVFFAG----NEYWI  100 (218)
T ss_dssp             EEEEETTEEEEEET--------TEEEEESSTTSCCEEEEEGGGTCTTSCS-CC-SEEEEETTTTEEEEEET----TEEEE
T ss_pred             EEEeCCCcEEEEEC--------CEEEEEeCCCCccCCCEEHHHhcCCCCC-Cc-cEEEEECCCCEEEEEeC----CEEEE
Confidence            45567999999977        445665544311 1  1121    2221 11 122222  589999999    78899


Q ss_pred             EeCCCCc---EEEecC--CCCcc-cceeEEE--ECCEEEEEccCCCCCCceEEEEEeCCCCceeec-----CC-CCC-CC
Q 045821          185 YDPRTNN---WKLHTE--PNIFT-EIEDSFV--MDGKIYIRCSASAATSHVCALVYEPSTDSWLHA-----DA-NMA-SG  249 (352)
Q Consensus       185 yd~~t~~---W~~~~~--~~~~~-~~~~~~~--~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~-----~~-~~~-~~  249 (352)
                      ||..+-.   =+.|..  .|... ...+++.  .++++|++-|..       .|+||..+++-..-     .. -+. +.
T Consensus       101 y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG~~-------ywr~d~~~~~v~~gyPr~i~~~w~g~p~  173 (218)
T 1gen_A          101 YSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDK-------FWRYNEVKKKMDPGFPKLIADAWNAIPD  173 (218)
T ss_dssp             EETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEETTE-------EEEEETTTTEECSSCCEEHHHHSSSCCS
T ss_pred             EcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEECCE-------EEEEECccccccCCCCcchhhccCCCCC
Confidence            9853210   011221  11111 1223343  268999996543       89999876542211     00 001 11


Q ss_pred             CCCcEEEEC--CEEEEEecCCCCeEEEEeCCCCc
Q 045821          250 WRGPAVVVD--DALYVLDQSSGTKLMMWQKESRE  281 (352)
Q Consensus       250 ~~~~~~~~~--~~l~~~gg~~~~~v~~yd~~~~~  281 (352)
                      ..-+++..+  +.+|++-|.   ..++||..+..
T Consensus       174 ~idaAf~~~~~g~~YfFkg~---~y~~~~~~~~~  204 (218)
T 1gen_A          174 NLDAVVDLQGGGHSYFFKGA---YYLKLENQSLK  204 (218)
T ss_dssp             SCSEEEECTTTCEEEEEETT---EEEEEETTEEE
T ss_pred             CCCEEEEEcCCCcEEEEECC---EEEEEECCcee
Confidence            112233433  899999876   89999987654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=91.22  E-value=10  Score=35.80  Aligned_cols=116  Identities=14%  Similarity=0.160  Sum_probs=67.6

Q ss_pred             EEECCEEEEEeCCCCCCCCCCeEEEEECCCCe--eEecCCCCCc---c---eeeeeEEECCEEEEEeCCCCCCceEEEeC
Q 045821          116 EVLGKNAYLLGGCGWSEDATSEVYCYDASMNT--WTDAAPMSTA---R---CYFPCGVLNQKIYCIGGLGDTHSWDVYDP  187 (352)
Q Consensus       116 ~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~---r---~~~~~~~~~~~iyv~gG~~~~~~v~~yd~  187 (352)
                      ++.++.||+....       ..++.+|..|++  |+.-...+..   .   .....++.+++||+....   ..+..+|.
T Consensus        65 ~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~d---g~l~AlD~  134 (582)
T 1flg_A           65 IVSDGVIYVTASY-------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLD---ASVVALNK  134 (582)
T ss_dssp             EEETTEEEEEETT-------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETT---TEEEEEES
T ss_pred             EEECCEEEEEcCC-------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCC---CEEEEEEC
Confidence            5679999998642       348999998876  8765433211   1   123455678999986432   57899999


Q ss_pred             CCCc--EEEecCCCCcc--cceeEEEECC------EEEEEccCCCCCCceEEEEEeCCCCc--eee
Q 045821          188 RTNN--WKLHTEPNIFT--EIEDSFVMDG------KIYIRCSASAATSHVCALVYEPSTDS--WLH  241 (352)
Q Consensus       188 ~t~~--W~~~~~~~~~~--~~~~~~~~~g------~iyv~GG~~~~~~~~~i~~yd~~~~~--W~~  241 (352)
                      .|.+  |+.-...+...  ....-++.++      .+|+-....+......+..||..+.+  |+.
T Consensus       135 ~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~  200 (582)
T 1flg_A          135 NTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMR  200 (582)
T ss_dssp             SSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred             CCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeec
Confidence            8875  87643211111  1112244555      66653211111122378999987664  864

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=91.22  E-value=6.9  Score=33.92  Aligned_cols=183  Identities=9%  Similarity=-0.021  Sum_probs=85.6

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecCC
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEP  198 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~  198 (352)
                      ++.+.+.|+.+      ..+.+||..+++-...-..+.+  -.++....+.+++...    ..+.+||..+.. +.+...
T Consensus        70 ~~~~~~~~~~d------~~v~iWd~~~~~~~~~~~~~~~--v~~v~~~~~~~~~~~~----~~i~i~d~~~~~-~~~~~~  136 (355)
T 3vu4_A           70 TNYVAFVTGVK------EVVHIWDDVKKQDVSRIKVDAP--VKDLFLSREFIVVSYG----DVISVFKFGNPW-KRITDD  136 (355)
T ss_dssp             SSEEEEECSST------TEEEEEETTTTEEEEEEECSSC--EEEEEECSSEEEEEET----TEEEEEESSTTC-CBSSCC
T ss_pred             CCEEEEEECCc------cEEEEEECCCCcEEEEEECCCc--eEEEEEcCCEEEEEEc----CEEEEEECCCCc-eeeEEe
Confidence            34555666532      3788999988864322112221  1122222445555443    678899988761 122211


Q ss_pred             CCcccceeEEEECCEEEEE-ccCCCCCCceEEEEEeCCCCc-eeecCC----------CCCCCCC-Cc--EE--EECCEE
Q 045821          199 NIFTEIEDSFVMDGKIYIR-CSASAATSHVCALVYEPSTDS-WLHADA----------NMASGWR-GP--AV--VVDDAL  261 (352)
Q Consensus       199 ~~~~~~~~~~~~~g~iyv~-GG~~~~~~~~~i~~yd~~~~~-W~~~~~----------~~~~~~~-~~--~~--~~~~~l  261 (352)
                      .. .. ...+...+.+.+. |+..+     .+..||..+.. +.....          ......+ ..  .+  ..++++
T Consensus       137 ~~-~~-~~~~~s~~~la~~sg~~~g-----~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~  209 (355)
T 3vu4_A          137 IR-FG-GVCEFSNGLLVYSNEFNLG-----QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDM  209 (355)
T ss_dssp             EE-EE-EEEEEETTEEEEEESSCTT-----CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSE
T ss_pred             cc-CC-ceEEEEccEEEEeCCCcCc-----EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCE
Confidence            11 11 1122223444343 33322     47778876543 111000          0000011 11  12  236778


Q ss_pred             EEEecCCCCe-EEEEeCCCCceEE-ccCCCCCcCCCCceEE-EeCCEEEEEcCCc-eEEEEEcCCcc
Q 045821          262 YVLDQSSGTK-LMMWQKESREWSP-VGRLSTLLTRPPCKLV-AIGKTIFVIGKGC-SAVVIDVGNIG  324 (352)
Q Consensus       262 ~~~gg~~~~~-v~~yd~~~~~W~~-~~~~~~~~~~~~~~~~-~~~~~i~v~gG~~-~~~~~d~~~~~  324 (352)
                      ++.|+.++ . +.+||..+.+-.. +..-..  ...-.++. ..+++.++.|+.+ .+.++|++...
T Consensus       210 l~s~s~d~-~~v~iwd~~~~~~~~~~~~g~h--~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          210 VATCSQDG-TIIRVFKTEDGVLVREFRRGLD--RADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             EEEEETTC-SEEEEEETTTCCEEEEEECTTC--CSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             EEEEeCCC-CEEEEEECCCCcEEEEEEcCCC--CCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            88888776 6 9999998765332 210001  11112222 2356666666655 46689987654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=91.15  E-value=8.6  Score=34.92  Aligned_cols=29  Identities=7%  Similarity=-0.029  Sum_probs=17.7

Q ss_pred             ECCEEEEEeCCCCCCCCCCeEEEEECCCCe
Q 045821          118 LGKNAYLLGGCGWSEDATSEVYCYDASMNT  147 (352)
Q Consensus       118 ~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~  147 (352)
                      -++ |||..-.+........+.++|..|.+
T Consensus       147 pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~  175 (462)
T 2ece_A          147 PDA-IYISALGNEEGEGPGGILMLDHYSFE  175 (462)
T ss_dssp             SSC-EEEEEEEETTSCSCCEEEEECTTTCC
T ss_pred             CCe-EEEEcCCCcCCCCCCeEEEEECCCCe
Confidence            355 77753211122445789999999876

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=91.14  E-value=10  Score=36.81  Aligned_cols=164  Identities=11%  Similarity=0.044  Sum_probs=86.4

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCC--C-eeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRR--S-WKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDAS  144 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~--~-w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~  144 (352)
                      +.+|++...........++.+|.  .+.  . +..+....   ... ...+...++.+|+....+   .....++.+|..
T Consensus       279 G~~l~~~~~~~~~~~~~l~~~d~--~~~~~~~~~~l~~~~---~~~-~~~~~~dg~~l~~~s~~~---~~~~~l~~~d~~  349 (741)
T 1yr2_A          279 GRWVVITSSEGTDPVNTVHVARV--TNGKIGPVTALIPDL---KAQ-WDFVDGVGDQLWFVSGDG---APLKKIVRVDLS  349 (741)
T ss_dssp             SCEEEEEEECTTCSCCEEEEEEE--ETTEECCCEEEECSS---SSC-EEEEEEETTEEEEEECTT---CTTCEEEEEECS
T ss_pred             CCEEEEEEEccCCCcceEEEEEC--CCCCCcccEEecCCC---Cce-EEEEeccCCEEEEEECCC---CCCCEEEEEeCC
Confidence            33455444332223456777787  665  6 77776433   111 222334567788775432   235679999988


Q ss_pred             C--CeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeE-EEECC-EEEEEccC
Q 045821          145 M--NTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDS-FVMDG-KIYIRCSA  220 (352)
Q Consensus       145 t--~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~-~~~~g-~iyv~GG~  220 (352)
                      +  ..|+.+-+-... ........++.+++....+....++.+|.....-+.+. .+........ ..-++ .|++... 
T Consensus       350 ~~~~~~~~l~~~~~~-~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~-~~~~~~v~~~~~s~d~~~l~~~~s-  426 (741)
T 1yr2_A          350 GSTPRFDTVVPESKD-NLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVS-LPGIGSASGLSGRPGDRHAYLSFS-  426 (741)
T ss_dssp             SSSCEEEEEECCCSS-EEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECB-CSSSCEEEEEECCBTCSCEEEEEE-
T ss_pred             CCccccEEEecCCCC-eEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeecc-CCCCeEEEEeecCCCCCEEEEEEc-
Confidence            7  578876432221 11223334778877765443367888887655444443 2211111111 11233 3444321 


Q ss_pred             CCCCCceEEEEEeCCCCceeecCC
Q 045821          221 SAATSHVCALVYEPSTDSWLHADA  244 (352)
Q Consensus       221 ~~~~~~~~i~~yd~~~~~W~~~~~  244 (352)
                       +......++.||..+++.+.+..
T Consensus       427 -s~~~P~~i~~~d~~tg~~~~l~~  449 (741)
T 1yr2_A          427 -SFTQPATVLALDPATAKTTPWEP  449 (741)
T ss_dssp             -ETTEEEEEEEEETTTTEEEECSC
T ss_pred             -CCCCCCEEEEEECCCCcEEEEec
Confidence             11223478999998888766643

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=91.07  E-value=11  Score=36.17  Aligned_cols=195  Identities=5%  Similarity=-0.094  Sum_probs=98.3

Q ss_pred             ceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-CCE-EEEEeCCCCC---------CCCCCeEEEEECCCCeeE-
Q 045821           82 RVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-GKN-AYLLGGCGWS---------EDATSEVYCYDASMNTWT-  149 (352)
Q Consensus        82 ~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~-iyv~GG~~~~---------~~~~~~~~~~d~~t~~W~-  149 (352)
                      ...++++|.  .++.........   . .. ...+.. +++ ||........         ......+++++..+.+.. 
T Consensus       150 ~~~i~v~d~--~tg~~~~~~~~~---~-~~-~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~  222 (710)
T 2xdw_A          150 WVTIKFMKV--DGAKELPDVLER---V-KF-SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED  222 (710)
T ss_dssp             CEEEEEEET--TTTEEEEEEEEE---E-CS-CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC
T ss_pred             eEEEEEEEC--CCCCCCcccccC---c-cc-ceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccc
Confidence            346788888  887765532111   1 11 112222 444 4444321110         012456888998887632 


Q ss_pred             -ecCCCC-CcceeeeeEEE-CCE-EEEEeCCCC--CCceEEEeCCC------C--cEEEecCCCCcccceeEEEECCEEE
Q 045821          150 -DAAPMS-TARCYFPCGVL-NQK-IYCIGGLGD--THSWDVYDPRT------N--NWKLHTEPNIFTEIEDSFVMDGKIY  215 (352)
Q Consensus       150 -~~~~~~-~~r~~~~~~~~-~~~-iyv~gG~~~--~~~v~~yd~~t------~--~W~~~~~~~~~~~~~~~~~~~g~iy  215 (352)
                       .+...+ .+......... +++ |++......  ...++++|..+      .  .++.+....... ......-++.||
T Consensus       223 ~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~  301 (710)
T 2xdw_A          223 ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGE-YDYVTNEGTVFT  301 (710)
T ss_dssp             EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSC-EEEEEEETTEEE
T ss_pred             eEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcE-EEEEeccCCEEE
Confidence             221211 12222222222 444 444433221  27888999876      4  577776432222 122233466788


Q ss_pred             EEccCCCCCCceEEEEEeCCCC---ceeecCCCCCCCCCCcEEEE-CCEEEEEecCCC-CeEEEEeCCCCc-eEEcc
Q 045821          216 IRCSASAATSHVCALVYEPSTD---SWLHADANMASGWRGPAVVV-DDALYVLDQSSG-TKLMMWQKESRE-WSPVG  286 (352)
Q Consensus       216 v~GG~~~~~~~~~i~~yd~~~~---~W~~~~~~~~~~~~~~~~~~-~~~l~~~gg~~~-~~v~~yd~~~~~-W~~~~  286 (352)
                      +.+...  .....++.+|..+.   .|+.+............... ++.+++.....+ ..++++|+.+++ ..++.
T Consensus       302 ~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~  376 (710)
T 2xdw_A          302 FKTNRH--SPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP  376 (710)
T ss_dssp             EEECTT--CTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred             EEECCC--CCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecC
Confidence            875332  22347889998765   58877442221111112334 778877765554 468999985544 44543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=91.00  E-value=6.5  Score=37.08  Aligned_cols=114  Identities=15%  Similarity=0.226  Sum_probs=67.1

Q ss_pred             eeeEEECCEEEEEeCCCCCCceEEEeCCCCc--EEEecCCCCcc------cceeEEEECCEEEEEccCCCCCCceEEEEE
Q 045821          161 FPCGVLNQKIYCIGGLGDTHSWDVYDPRTNN--WKLHTEPNIFT------EIEDSFVMDGKIYIRCSASAATSHVCALVY  232 (352)
Q Consensus       161 ~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~--W~~~~~~~~~~------~~~~~~~~~g~iyv~GG~~~~~~~~~i~~y  232 (352)
                      ...++.++.||+.+...   .+..+|..|.+  |+.-...+...      .....++.+++||+... .     ..++++
T Consensus        62 ~~P~v~~g~vyv~~~~~---~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~-d-----g~l~Al  132 (582)
T 1flg_A           62 SQAIVSDGVIYVTASYS---RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-D-----ASVVAL  132 (582)
T ss_dssp             CCCEEETTEEEEEETTT---EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-T-----TEEEEE
T ss_pred             eccEEECCEEEEEcCCC---CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-C-----CEEEEE
Confidence            34566799999987642   38999998774  98754322211      01234567899988632 1     268999


Q ss_pred             eCCCCc--eeecCCCCCC--CCCCcEEEECC------EEEEEec-----CCCCeEEEEeCCCCc--eEE
Q 045821          233 EPSTDS--WLHADANMAS--GWRGPAVVVDD------ALYVLDQ-----SSGTKLMMWQKESRE--WSP  284 (352)
Q Consensus       233 d~~~~~--W~~~~~~~~~--~~~~~~~~~~~------~l~~~gg-----~~~~~v~~yd~~~~~--W~~  284 (352)
                      |..+.+  |+.-......  ......++.++      .+|+-..     .. ..++.||.++++  |+.
T Consensus       133 D~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~-g~v~alD~~tG~~~W~~  200 (582)
T 1flg_A          133 NKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVV-GRLFARDPDTGEEIWMR  200 (582)
T ss_dssp             ESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCB-CEEEEECTTTCCEEEEE
T ss_pred             ECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCC-CEEEEEECCCCCEEeec
Confidence            987764  8754322111  11222234455      5554321     12 389999998765  864

>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A

Probab=91.00  E-value=1.6  Score=35.69  Aligned_cols=142  Identities=8%  Similarity=0.047  Sum_probs=75.3

Q ss_pred             CCEEEEEeCCCCCCceEEEeCCC----CcEE----Eec----CCCCc---ccceeEEE--ECCEEEEEccCCCCCCceEE
Q 045821          167 NQKIYCIGGLGDTHSWDVYDPRT----NNWK----LHT----EPNIF---TEIEDSFV--MDGKIYIRCSASAATSHVCA  229 (352)
Q Consensus       167 ~~~iyv~gG~~~~~~v~~yd~~t----~~W~----~~~----~~~~~---~~~~~~~~--~~g~iyv~GG~~~~~~~~~i  229 (352)
                      ++.+|++-|    ..+++++...    +...    .|.    .+|..   .....++.  .+|++|++-|..       +
T Consensus        15 ~ge~yfFkg----~~~wr~~~~~~~~~~~~~~~P~~I~~~W~~Lp~~~f~p~~iDaaf~~~~g~~~fFKg~~-------~   83 (227)
T 3lp9_A           15 NNEAYFFIN----DKYVLLDYAPGSSRDKVLYGPTPVRDGFKSLNQTIFGSYGIDCSFDTENNEAFIFYENF-------C   83 (227)
T ss_dssp             TTEEEEEET----TEEEEEECCTTSSCCEEEEEEEEHHHHSGGGTTSHHHHHCCSEEEECSTTEEEEEETTE-------E
T ss_pred             CCeEEEEEC----CEEEEEeCCCCCccccccCCceEHhhcCCcCCcccCCCCCceEEEECCCCEEEEEeCCE-------E
Confidence            589999988    6678877621    1111    111    12111   12222232  589999996543       7


Q ss_pred             EEEeCCC---------------CceeecCCCCCCCCCCcEEEE--CCEEEEEecCCCCeEEEEeCCCCceEE-----cc-
Q 045821          230 LVYEPST---------------DSWLHADANMASGWRGPAVVV--DDALYVLDQSSGTKLMMWQKESREWSP-----VG-  286 (352)
Q Consensus       230 ~~yd~~~---------------~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~v~~yd~~~~~W~~-----~~-  286 (352)
                      |+|+...               ..|..++...-....-++...  ++++|++-|.   ..|+||..+++-..     +. 
T Consensus        84 Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p~~IDAA~~~~~~~k~yfFkG~---~yw~~d~~~~~~~~gyPk~i~~  160 (227)
T 3lp9_A           84 ALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGIDAAYRSTRGKEVYLFKGD---QYARIDYGSNSMVNKEIKSISS  160 (227)
T ss_dssp             EEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTTTCCSEEEECSSTTEEEEEETT---EEEEEETTTTEESSSSCEEHHH
T ss_pred             EEEeCCCCccccccccCceEHhhhcCCCCCccCCCcccEEEEECCCCEEEEEECC---EEEEEeCCCccccCCCCeEHHH
Confidence            8887211               123333210001112223332  6899999886   89999987654211     11 


Q ss_pred             CCCCC----cCCCCceEEE--eCCEEEEEcCCceEEEEEcCCc
Q 045821          287 RLSTL----LTRPPCKLVA--IGKTIFVIGKGCSAVVIDVGNI  323 (352)
Q Consensus       287 ~~~~~----~~~~~~~~~~--~~~~i~v~gG~~~~~~~d~~~~  323 (352)
                      .+|..    .+...-+++.  .++++|+|-|. ..+-||..+.
T Consensus       161 g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg~-~Ywr~d~~~~  202 (227)
T 3lp9_A          161 GYPCFRNTIFESGADAAFASHKTNEVYFFKDD-HYARVKVTPX  202 (227)
T ss_dssp             HCGGGTTSGGGGCCSEEEECSSTTEEEEEETT-EEEEEECCSS
T ss_pred             CCCCccccccCCCccEEEEcCCCceEEEEECC-EEEEEECCcc
Confidence            12321    0122223333  46899999875 4666998876

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=90.98  E-value=6.6  Score=33.27  Aligned_cols=144  Identities=8%  Similarity=-0.040  Sum_probs=72.8

Q ss_pred             CCEEEEEeCCCCCCceEEEeCCCCc----EEEecCCCCcccceeEEEECCE-EEEEccCCCCCCceEEEEEeC-CCCcee
Q 045821          167 NQKIYCIGGLGDTHSWDVYDPRTNN----WKLHTEPNIFTEIEDSFVMDGK-IYIRCSASAATSHVCALVYEP-STDSWL  240 (352)
Q Consensus       167 ~~~iyv~gG~~~~~~v~~yd~~t~~----W~~~~~~~~~~~~~~~~~~~g~-iyv~GG~~~~~~~~~i~~yd~-~~~~W~  240 (352)
                      ++..++.|+.+  ..+.+||..+..    -...... .......+..-+++ +++.|+.++     .+..||. .+.+-.
T Consensus        22 ~~~~l~~~~~d--~~v~iw~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~~~~   93 (342)
T 1yfq_A           22 SKSLLLITSWD--GSLTVYKFDIQAKNVDLLQSLRY-KHPLLCCNFIDNTDLQIYVGTVQG-----EILKVDLIGSPSFQ   93 (342)
T ss_dssp             GGTEEEEEETT--SEEEEEEEETTTTEEEEEEEEEC-SSCEEEEEEEESSSEEEEEEETTS-----CEEEECSSSSSSEE
T ss_pred             CCCEEEEEcCC--CeEEEEEeCCCCccccceeeeec-CCceEEEEECCCCCcEEEEEcCCC-----eEEEEEeccCCceE
Confidence            44555555544  577888887765    3322211 11111122333677 666666543     5888998 877765


Q ss_pred             ecCCCCCCCCCCcEE-EECCEEEEEecCCCCeEEEEeCCCC---c----eEEccCCCCCcCCCCceEEEeCCEEEEEcCC
Q 045821          241 HADANMASGWRGPAV-VVDDALYVLDQSSGTKLMMWQKESR---E----WSPVGRLSTLLTRPPCKLVAIGKTIFVIGKG  312 (352)
Q Consensus       241 ~~~~~~~~~~~~~~~-~~~~~l~~~gg~~~~~v~~yd~~~~---~----W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~  312 (352)
                      .+.... ....-..+ ...+.+++.++.++ .+.+||..+.   .    ...+..+..  .....++....+.+++.+..
T Consensus        94 ~~~~~~-~~~~v~~l~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~l~~~~~d  169 (342)
T 1yfq_A           94 ALTNNE-ANLGICRICKYGDDKLIAASWDG-LIEVIDPRNYGDGVIAVKNLNSNNTKV--KNKIFTMDTNSSRLIVGMNN  169 (342)
T ss_dssp             ECBSCC-CCSCEEEEEEETTTEEEEEETTS-EEEEECHHHHTTBCEEEEESCSSSSSS--CCCEEEEEECSSEEEEEEST
T ss_pred             eccccC-CCCceEEEEeCCCCEEEEEcCCC-eEEEEcccccccccccccCCeeeEEee--CCceEEEEecCCcEEEEeCC
Confidence            553310 11111112 22255666666665 8999987640   0    222222221  12223444445564444444


Q ss_pred             ceEEEEEcCC
Q 045821          313 CSAVVIDVGN  322 (352)
Q Consensus       313 ~~~~~~d~~~  322 (352)
                      ..+.+||...
T Consensus       170 ~~i~i~d~~~  179 (342)
T 1yfq_A          170 SQVQWFRLPL  179 (342)
T ss_dssp             TEEEEEESSC
T ss_pred             CeEEEEECCc
Confidence            4677899877

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=90.95  E-value=4.4  Score=36.03  Aligned_cols=94  Identities=12%  Similarity=0.067  Sum_probs=55.8

Q ss_pred             CceEEEeCCCCcEEEecCCCCcccceeEEE--ECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEE
Q 045821          180 HSWDVYDPRTNNWKLHTEPNIFTEIEDSFV--MDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVV  257 (352)
Q Consensus       180 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~--~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~  257 (352)
                      +.|.++|..+++...+-........-.++.  -+|++++.|+.++     .+..||..+++-.....  .+......+..
T Consensus       125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg-----~v~iWd~~~~~~~~~~~--~h~~~v~~~s~  197 (420)
T 4gga_A          125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA-----EVQLWDVQQQKRLRNMT--SHSARVGSLSW  197 (420)
T ss_dssp             TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEEC--CCSSCEEEEEE
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCC-----eEEEEEcCCCcEEEEEe--CCCCceEEEee
Confidence            678899999988765543322222222222  3678888876553     47888887765432211  11111223456


Q ss_pred             CCEEEEEecCCCCeEEEEeCCCCc
Q 045821          258 DDALYVLDQSSGTKLMMWQKESRE  281 (352)
Q Consensus       258 ~~~l~~~gg~~~~~v~~yd~~~~~  281 (352)
                      ++.+++.|+..+ .+..+|.....
T Consensus       198 ~~~~l~sgs~d~-~i~~~d~~~~~  220 (420)
T 4gga_A          198 NSYILSSGSRSG-HIHHHDVRVAE  220 (420)
T ss_dssp             ETTEEEEEETTS-EEEEEETTSSS
T ss_pred             CCCEEEEEeCCC-ceeEeeecccc
Confidence            777777777666 88888877644

>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A

Probab=90.69  E-value=8.3  Score=33.95  Aligned_cols=146  Identities=8%  Similarity=0.044  Sum_probs=80.1

Q ss_pred             eeEEECCEEEEEeCCCCCCceEEEeCCCCcE--EEec----CCCCcccceeEEEE--CCEEEEEccCCCCCCceEEEEEe
Q 045821          162 PCGVLNQKIYCIGGLGDTHSWDVYDPRTNNW--KLHT----EPNIFTEIEDSFVM--DGKIYIRCSASAATSHVCALVYE  233 (352)
Q Consensus       162 ~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W--~~~~----~~~~~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd  233 (352)
                      +++.+++++|++-|    ..+++++.....-  ..|.    .+|  ...-++...  +|++|++-|..       .|+|+
T Consensus       185 Av~~~~g~~~fFkg----~~~Wr~~~~~~~~~p~~I~~~wpgLP--~~iDAa~~~~~~g~~~fFkg~~-------yWr~~  251 (365)
T 3ba0_A          185 AVTTVGNKIFFFKD----RFFWLKVSERPKTSVNLISSLWPTLP--SGIEAAYEIEARNQVFLFKDDK-------YWLIS  251 (365)
T ss_dssp             CEEEETTEEEEEET----TEEEECCSSCCCCCEEEHHHHCSSCC--SSCCEEEEEGGGTEEEEEETTE-------EEECS
T ss_pred             eEEEcCCeEEEEeC----CEEEEEcCCCccCCccchhhhccCCC--CCccEEEEecCCCEEEEEeCCE-------EEEEc
Confidence            45557999999998    6678887654321  1121    122  122234444  78999995543       78886


Q ss_pred             CCCCc--e-eecCCC-CCCC--CCCcEEEE--CCEEEEEecCCCCeEEEEeCCCCceEE-----cc-CCCCCcCCCCceE
Q 045821          234 PSTDS--W-LHADAN-MASG--WRGPAVVV--DDALYVLDQSSGTKLMMWQKESREWSP-----VG-RLSTLLTRPPCKL  299 (352)
Q Consensus       234 ~~~~~--W-~~~~~~-~~~~--~~~~~~~~--~~~l~~~gg~~~~~v~~yd~~~~~W~~-----~~-~~~~~~~~~~~~~  299 (352)
                      .....  + ..+... .+..  .--+++..  ++++|++-|.   ..|+||..+++-..     +. ..|. .+...-++
T Consensus       252 ~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG~---~yw~yd~~~~~v~~gyPk~I~~~f~g-~p~~iDaA  327 (365)
T 3ba0_A          252 NLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVDN---QYWRYDERRQMMDPGYPKLITKNFQG-IGPKIDAV  327 (365)
T ss_dssp             TTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEETT---EEEEEETTTTEECSSCCCCHHHHSTT-CCSSCSEE
T ss_pred             CCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEECC---EEEEEeCCcceecCCCCcchhhcCCC-CCCcccee
Confidence            53211  1 122211 1110  11123333  5899999885   89999987654321     10 0111 11222334


Q ss_pred             EEe-CCEEEEEcCCceEEEEEcCCccc
Q 045821          300 VAI-GKTIFVIGKGCSAVVIDVGNIGN  325 (352)
Q Consensus       300 ~~~-~~~i~v~gG~~~~~~~d~~~~~w  325 (352)
                      +.. ++++|.|-|. ..+-||..+.+-
T Consensus       328 ~~~~~g~~YfFkg~-~ywr~d~~~~~v  353 (365)
T 3ba0_A          328 FYSKNKYYYFFQGS-NQFEYDFLLQRI  353 (365)
T ss_dssp             EEETTTEEEEEETT-EEEEEETTTTEE
T ss_pred             eEecCCcEEEEeCC-EEEEEECCccEE
Confidence            444 8899999875 566799877553

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=90.68  E-value=10  Score=35.00  Aligned_cols=181  Identities=8%  Similarity=0.056  Sum_probs=85.9

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecC
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTE  197 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~  197 (352)
                      ++..++.++.+      ..+.++|.....-..+.....+ . .+++.. +++..+.|+.+  ..+.+||.....-..+..
T Consensus       314 ~~~~l~t~~~d------~~i~~w~~~~~~~~~~~~~~~~-v-~~~~~s~~g~~l~~~~~d--g~v~~~~~~~~~~~~~~~  383 (577)
T 2ymu_A          314 DGQTIASASDD------KTVKLWNRNGQHLQTLTGHSSS-V-WGVAFSPDGQTIASASDD--KTVKLWNRNGQLLQTLTG  383 (577)
T ss_dssp             TSSEEEEEETT------SCEEEEETTSCEEEEECCCSSC-E-EEEEECTTSSEEEEEETT--SEEEEEETTCCEEEEEEC
T ss_pred             CCCEEEEEeCC------CeEEEEeCCCCeeEEEeCCCCC-E-EEEEECCCCCEEEEEeCC--CEEEEEcCCCCEEEEecC
Confidence            44455555432      3466778766654444322211 1 122222 56666666644  567888865544443332


Q ss_pred             CCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeC
Q 045821          198 PNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQK  277 (352)
Q Consensus       198 ~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~  277 (352)
                      ... .-...++.-+++.++.|+.++     .+..||.....-..+... .......++.-+++.++.++.++ .+.+||.
T Consensus       384 ~~~-~v~~~~~s~dg~~l~~~~~d~-----~v~~~~~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~~~~~d~-~v~~w~~  455 (577)
T 2ymu_A          384 HSS-SVRGVAFSPDGQTIASASDDK-----TVKLWNRNGQLLQTLTGH-SSSVWGVAFSPDDQTIASASDDK-TVKLWNR  455 (577)
T ss_dssp             CSS-CEEEEEECTTSSCEEEEETTS-----EEEEECTTCCEEEEEECC-SSCEEEEEECTTSSEEEEEETTS-EEEEEET
T ss_pred             CCC-CeEEEEECCCCCEEEEEeCCC-----EEEEEeCCCCEEEEecCC-CCCeEEEEECCCCCEEEEEcCCC-EEEEEEC
Confidence            111 111112223667666655442     567777644333332211 11101111223667777776665 8999998


Q ss_pred             CCCceEEccCCCCCcCCCCceE-EEeCCEEEEEcCCce-EEEEEcC
Q 045821          278 ESREWSPVGRLSTLLTRPPCKL-VAIGKTIFVIGKGCS-AVVIDVG  321 (352)
Q Consensus       278 ~~~~W~~~~~~~~~~~~~~~~~-~~~~~~i~v~gG~~~-~~~~d~~  321 (352)
                      ....-..+.....    ...++ ...++++++.++.+. +.++|..
T Consensus       456 ~~~~~~~~~~~~~----~v~~~~~spd~~~las~~~d~~i~iw~~~  497 (577)
T 2ymu_A          456 NGQLLQTLTGHSS----SVRGVAFSPDGQTIASASDDKTVKLWNRN  497 (577)
T ss_dssp             TSCEEEEEECCSS----CEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred             CCCEEEEEcCCCC----CEEEEEEcCCCCEEEEEeCCCEEEEEcCC
Confidence            7655544432211    11112 223566666655543 4467743

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=90.51  E-value=8.9  Score=33.99  Aligned_cols=148  Identities=12%  Similarity=0.058  Sum_probs=75.9

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEe-cCCCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCcEEEe
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTD-AAPMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNNWKLH  195 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~-~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~W~~~  195 (352)
                      ++.+++.|+.      ...+.+||..+.+-.. +...+. ...-..+.+  ++..++.|+.+  ..+.+||..+.+....
T Consensus       181 ~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~d--g~i~iwd~~~~~~~~~  251 (437)
T 3gre_A          181 EKSLLVALTN------LSRVIIFDIRTLERLQIIENSPR-HGAVSSICIDEECCVLILGTTR--GIIDIWDIRFNVLIRS  251 (437)
T ss_dssp             SCEEEEEEET------TSEEEEEETTTCCEEEEEECCGG-GCCEEEEEECTTSCEEEEEETT--SCEEEEETTTTEEEEE
T ss_pred             CCCEEEEEeC------CCeEEEEeCCCCeeeEEEccCCC-CCceEEEEECCCCCEEEEEcCC--CeEEEEEcCCccEEEE
Confidence            3566666654      3568899998765322 221101 111122223  56677777765  6789999988754332


Q ss_pred             cCCCCcccceeEEE-----ECCEEEEEccCCCCCCceEEEEEeCCCCceeec-CC----------CCCC------CC---
Q 045821          196 TEPNIFTEIEDSFV-----MDGKIYIRCSASAATSHVCALVYEPSTDSWLHA-DA----------NMAS------GW---  250 (352)
Q Consensus       196 ~~~~~~~~~~~~~~-----~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~-~~----------~~~~------~~---  250 (352)
                      -.......-..++.     -++++++.|+.+     ..+..||..+.+-... ..          .+..      ..   
T Consensus       252 ~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  326 (437)
T 3gre_A          252 WSFGDHAPITHVEVCQFYGKNSVIVVGGSSK-----TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGI  326 (437)
T ss_dssp             EBCTTCEEEEEEEECTTTCTTEEEEEEESTT-----EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCC
T ss_pred             EecCCCCceEEEEeccccCCCccEEEEEcCC-----CcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccc
Confidence            11111111111111     134566665443     2577788766542211 00          0000      00   


Q ss_pred             -C----CcEEEECCEEEEEecCCCCeEEEEeCCCCc
Q 045821          251 -R----GPAVVVDDALYVLDQSSGTKLMMWQKESRE  281 (352)
Q Consensus       251 -~----~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~  281 (352)
                       +    ......++++++.|+.++ .|.+||..+.+
T Consensus       327 ~~~~~v~~l~~~~~~~l~s~~~d~-~i~~wd~~~~~  361 (437)
T 3gre_A          327 RSLNALSTISVSNDKILLTDEATS-SIVMFSLNELS  361 (437)
T ss_dssp             CSGGGGCCEEEETTEEEEEEGGGT-EEEEEETTCGG
T ss_pred             ccCCceEEEEECCceEEEecCCCC-eEEEEECCCcc
Confidence             1    112333778888888776 99999998765

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=90.48  E-value=13  Score=35.78  Aligned_cols=148  Identities=13%  Similarity=0.082  Sum_probs=80.4

Q ss_pred             eeEEEecCCCCCC--CeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCC---eeEecCCCCCc
Q 045821           83 VCCYVLDPNSTRR--SWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMN---TWTDAAPMSTA  157 (352)
Q Consensus        83 ~~~~~~d~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~---~W~~~~~~~~~  157 (352)
                      ..++.+|.  .+.  .+..+....    ..........++.+|+....+.   ....++.+|..+.   .|+.+.+-...
T Consensus       259 ~~i~~~d~--~~~~~~~~~l~~~~----~~~~~~~~~~g~~l~~~t~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~~~  329 (693)
T 3iuj_A          259 NRLYVKDL--SQENAPLLTVQGDL----DADVSLVDNKGSTLYLLTNRDA---PNRRLVTVDAANPGPAHWRDLIPERQQ  329 (693)
T ss_dssp             CEEEEEET--TSTTCCCEEEECSS----SSCEEEEEEETTEEEEEECTTC---TTCEEEEEETTSCCGGGCEEEECCCSS
T ss_pred             cEEEEEEC--CCCCCceEEEeCCC----CceEEEEeccCCEEEEEECCCC---CCCEEEEEeCCCCCccccEEEecCCCC
Confidence            46777777  444  677765432    1112224455788988876432   3568899998764   37765432222


Q ss_pred             ceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCccccee-EEEEC-CEEEEEccCCCCCCceEEEEEeCC
Q 045821          158 RCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIED-SFVMD-GKIYIRCSASAATSHVCALVYEPS  235 (352)
Q Consensus       158 r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~-~~~~~-g~iyv~GG~~~~~~~~~i~~yd~~  235 (352)
                       .. .....++.|++....+....+.++|..+...+.+. .+....... ....+ +.+++...  +......++.||..
T Consensus       330 -~~-~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~-~p~~~~~~~~~~~~d~~~l~~~~s--s~~tP~~l~~~d~~  404 (693)
T 3iuj_A          330 -VL-TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVA-LPGLGSVSGFNGKHDDPALYFGFE--NYAQPPTLYRFEPK  404 (693)
T ss_dssp             -CE-EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEEC-CSSSSEEEECCCCTTCSCEEEEEE--CSSSCCEEEEECTT
T ss_pred             -EE-EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEee-cCCCceEEeeecCCCCCEEEEEec--CCCCCCEEEEEECC
Confidence             22 44445666665543322257889999877666664 222211111 11113 34444321  11223478999998


Q ss_pred             CCceeecCC
Q 045821          236 TDSWLHADA  244 (352)
Q Consensus       236 ~~~W~~~~~  244 (352)
                      +++.+.+..
T Consensus       405 ~g~~~~l~~  413 (693)
T 3iuj_A          405 SGAISLYRA  413 (693)
T ss_dssp             TCCEEEEEC
T ss_pred             CCeEEEEEe
Confidence            888776643

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=90.13  E-value=8.4  Score=33.08  Aligned_cols=184  Identities=9%  Similarity=-0.023  Sum_probs=100.9

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCe---eEecCCCCCcceeeeeEE--ECCEEEEEeCCCCCCceEEEeCCCCcEE
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNT---WTDAAPMSTARCYFPCGV--LNQKIYCIGGLGDTHSWDVYDPRTNNWK  193 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~---W~~~~~~~~~r~~~~~~~--~~~~iyv~gG~~~~~~v~~yd~~t~~W~  193 (352)
                      ++.||...-      ....++++++....   +.....+..|   .+.++  .++.||+.-...  ..++++++....-+
T Consensus        46 ~~~lyw~D~------~~~~I~r~~~~g~~~~~~~~~~~l~~p---~glavd~~~g~ly~~d~~~--~~I~~~~~dG~~~~  114 (318)
T 3sov_A           46 HGLIYWSDV------SEEAIKRTEFNKTESVQNVVVSGLLSP---DGLACDWLGEKLYWTDSET--NRIEVSNLDGSLRK  114 (318)
T ss_dssp             GTEEEEEET------TTTEEEEEETTSSSCCCEEEEECCSCC---CEEEEETTTTEEEEEETTT--TEEEEEETTSCSCE
T ss_pred             CCEEEEEEC------CCCcEEEEEccCCCceEEEEcCCCCCc---cEEEEEcCCCeEEEEECCC--CEEEEEECCCCcEE
Confidence            578998853      24678888887652   1111122221   22333  378999986433  67889998765433


Q ss_pred             EecCCCCcccceeEEE--ECCEEEEEccCCCCCCceEEEEEeCCCCceeec-CCCCCCCCCCcEEE-ECCEEEEEecCCC
Q 045821          194 LHTEPNIFTEIEDSFV--MDGKIYIRCSASAATSHVCALVYEPSTDSWLHA-DANMASGWRGPAVV-VDDALYVLDQSSG  269 (352)
Q Consensus       194 ~~~~~~~~~~~~~~~~--~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~-~~~~~~~~~~~~~~-~~~~l~~~gg~~~  269 (352)
                      .+.. .....-...++  .+|.||+.--.    ....|+++++....=+.+ ......+ .+.++. .++.||+.....+
T Consensus       115 ~l~~-~~~~~P~giavdp~~g~ly~td~~----~~~~I~r~~~dG~~~~~~~~~~l~~P-nglavd~~~~~lY~aD~~~~  188 (318)
T 3sov_A          115 VLFW-QELDQPRAIALDPSSGFMYWTDWG----EVPKIERAGMDGSSRFIIINSEIYWP-NGLTLDYEEQKLYWADAKLN  188 (318)
T ss_dssp             EEEC-SSCSSEEEEEEEGGGTEEEEEECS----SSCEEEEEETTSCSCEEEECSSCSCE-EEEEEETTTTEEEEEETTTT
T ss_pred             EEEe-CCCCCccEEEEeCCCCEEEEEecC----CCCEEEEEEcCCCCeEEEEECCCCCc-cEEEEeccCCEEEEEECCCC
Confidence            3321 11111123333  26899997411    123688998864332222 2111000 111222 2788999876544


Q ss_pred             CeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEc-CCceEEEEEcCCc
Q 045821          270 TKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIG-KGCSAVVIDVGNI  323 (352)
Q Consensus       270 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~g-G~~~~~~~d~~~~  323 (352)
                       .|+++|++...-+.+...   ....-.++++.++.+|+.- +...+..+|+.+.
T Consensus       189 -~I~~~d~dG~~~~~~~~~---~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G  239 (318)
T 3sov_A          189 -FIHKSNLDGTNRQAVVKG---SLPHPFALTLFEDILYWTDWSTHSILACNKYTG  239 (318)
T ss_dssp             -EEEEEETTSCSCEEEECS---CCSCEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             -EEEEEcCCCCceEEEecC---CCCCceEEEEeCCEEEEEecCCCeEEEEECCCC
Confidence             899999986544444321   1233457777888998874 4445667887443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=89.70  E-value=14  Score=35.13  Aligned_cols=183  Identities=13%  Similarity=-0.013  Sum_probs=99.6

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEE--ECCEEEEEeCCCCCCCCCCeEEEEECCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEV--LGKNAYLLGGCGWSEDATSEVYCYDASM  145 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~t  145 (352)
                      ++.||..-.    ....++.+++  .......+....   . ..-..+++  .++.||+...      ....++++++..
T Consensus        48 ~~~lywtD~----~~~~I~r~~~--~g~~~~~v~~~g---~-~~P~GlAvD~~~~~LY~tD~------~~~~I~v~~~dG  111 (628)
T 4a0p_A           48 DNRIYWTDI----SLKTISRAFM--NGSALEHVVEFG---L-DYPEGMAVDWLGKNLYWADT------GTNRIEVSKLDG  111 (628)
T ss_dssp             TTEEEEEET----TTTEEEEEET--TSCSCEEEECSS---C-SCCCEEEEETTTTEEEEEET------TTTEEEEEETTS
T ss_pred             CCEEEEEEC----CCCeEEEEEC--CCCCcEEEEeCC---C-CCcceEEEEeCCCEEEEEEC------CCCEEEEEecCC
Confidence            678887732    2235566677  555555444322   1 11123343  5789999853      246788998875


Q ss_pred             CeeEec--CCCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE--CCEEEEEcc
Q 045821          146 NTWTDA--APMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM--DGKIYIRCS  219 (352)
Q Consensus       146 ~~W~~~--~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~iyv~GG  219 (352)
                      ..-+.+  ..+..|+   ++++-  ++.||+.--.. ...+++.++....-+.+..  ....-.+.+.-  +++||+.-.
T Consensus       112 ~~~~~l~~~~l~~P~---~iavdp~~G~lY~tD~g~-~~~I~r~~~dG~~~~~l~~--~~~~P~GlalD~~~~~LY~aD~  185 (628)
T 4a0p_A          112 QHRQVLVWKDLDSPR---ALALDPAEGFMYWTEWGG-KPKIDRAAMDGSERTTLVP--NVGRANGLTIDYAKRRLYWTDL  185 (628)
T ss_dssp             TTCEEEECSSCCCEE---EEEEETTTTEEEEEECSS-SCEEEEEETTSCSCEEEEC--SCSSEEEEEEETTTTEEEEEET
T ss_pred             CcEEEEEeCCCCCcc---cEEEccCCCeEEEeCCCC-CCEEEEEeCCCCceEEEEC--CCCCcceEEEccccCEEEEEEC
Confidence            432222  2333332   33443  68999986211 2688889887665444432  11111122222  589999842


Q ss_pred             CCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCC
Q 045821          220 ASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESR  280 (352)
Q Consensus       220 ~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~  280 (352)
                      .     ...|+++|+....=+.+......+  ...++.++.||+..-..+ .|.+.|..++
T Consensus       186 ~-----~~~I~~~d~dG~~~~v~~~~l~~P--~glav~~~~ly~tD~~~~-~I~~~dk~tg  238 (628)
T 4a0p_A          186 D-----TNLIESSNMLGLNREVIADDLPHP--FGLTQYQDYIYWTDWSRR-SIERANKTSG  238 (628)
T ss_dssp             T-----TTEEEEEETTSCSCEEEEECCSCE--EEEEEETTEEEEEETTTT-EEEEEETTTC
T ss_pred             C-----CCEEEEEcCCCCceEEeeccCCCc--eEEEEECCEEEEecCCCC-EEEEEECCCC
Confidence            2     237888988643223332211111  123456889998875444 7888886544

>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1

Probab=89.55  E-value=7.3  Score=31.54  Aligned_cols=136  Identities=15%  Similarity=0.218  Sum_probs=72.5

Q ss_pred             ECCEEEEEeCCCCCCCCCCeEEEEECCCCee--EecC----CCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCc
Q 045821          118 LGKNAYLLGGCGWSEDATSEVYCYDASMNTW--TDAA----PMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNN  191 (352)
Q Consensus       118 ~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W--~~~~----~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~  191 (352)
                      .++++|+|-|        ..+|+++......  ..+.    .+|.  .--++...++++|++-|    +.+++|+..++.
T Consensus        27 ~~g~~yfFkg--------~~~Wr~~~~~~~~~p~~Is~~wpgLP~--~IDAA~~~~~~~yfFkG----~~yw~~~~~~~~   92 (219)
T 1hxn_A           27 NHGATYVFSG--------SHYWRLDTNRDGWHSWPIAHQWPQGPS--TVDAAFSWEDKLYLIQD----TKVYVFLTKGGY   92 (219)
T ss_dssp             TTSCEEEEET--------TEEEESSSSSCTTCCEEGGGTCTTSCS--SCSEEEEETTEEEEEET----TEEEEEECSSSC
T ss_pred             CCCcEEEEeC--------CEEEEEcCCCCCCCceEhhhhccCCCC--CccEEEEECCcEEEecC----CEEEEEeCCCCc
Confidence            5788999977        3456655432211  1111    1221  11233334899999998    789999875421


Q ss_pred             -----E-EEecC---CCCc--cc-ceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCC---ceeecCCCCCCCCCCcE
Q 045821          192 -----W-KLHTE---PNIF--TE-IEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTD---SWLHADANMASGWRGPA  254 (352)
Q Consensus       192 -----W-~~~~~---~~~~--~~-~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~---~W~~~~~~~~~~~~~~~  254 (352)
                           + +.|..   +|..  .. ..+++..  ++++|.+-|..       .|+||..+.   .|...+..  ....-++
T Consensus        93 ~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG~~-------ywr~d~~~~P~~i~~~~~g~--p~~vdAa  163 (219)
T 1hxn_A           93 TLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGRR-------LWWLDLKSGAQATWTELPWP--HEKVDGA  163 (219)
T ss_dssp             EECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEETTE-------EEEEEGGGGGGCCCEEECCS--CSCCSEE
T ss_pred             eecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeCCE-------EEEEeCCCCceEhhhcCCCC--CCCcCEE
Confidence                 0 11211   2221  11 2233332  58999996544       799996542   23322211  1111223


Q ss_pred             EE------------ECCEEEEEecCCCCeEEEEeCCC
Q 045821          255 VV------------VDDALYVLDQSSGTKLMMWQKES  279 (352)
Q Consensus       255 ~~------------~~~~l~~~gg~~~~~v~~yd~~~  279 (352)
                      +.            .++.+|++-|.   ..++||..+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~YFFkg~---~y~r~~~~~  197 (219)
T 1hxn_A          164 LCMEKPLGPNSCSTSGPNLYLIHGP---NLYCYRHVD  197 (219)
T ss_dssp             EEESSCSSSCCSCSSSCEEEEEETT---EEEEESSHH
T ss_pred             EEccccccccceeccCCeEEEEECC---EEEEEeCCc
Confidence            33            34689999886   788988754

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=89.18  E-value=9.6  Score=32.45  Aligned_cols=134  Identities=11%  Similarity=0.093  Sum_probs=66.7

Q ss_pred             CCeEEEEECCCCee-EecCCCCCcceeeeeEEE-CCEEEEEeCCCC-------CCceEEEeCCCCcEEEecCCCCcccce
Q 045821          135 TSEVYCYDASMNTW-TDAAPMSTARCYFPCGVL-NQKIYCIGGLGD-------THSWDVYDPRTNNWKLHTEPNIFTEIE  205 (352)
Q Consensus       135 ~~~~~~~d~~t~~W-~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~-------~~~v~~yd~~t~~W~~~~~~~~~~~~~  205 (352)
                      ...++++|..+++. ..+.. +   .....+.. ++ +++.+....       ...++.+|  +++++.+...   . ..
T Consensus       151 ~~~l~~~d~~~~~~~~~l~~-~---~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~---~-~~  219 (347)
T 2gop_A          151 KTTFWIFDTESEEVIEEFEK-P---RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK---V-SF  219 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEE-E---TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE---E-SE
T ss_pred             cceEEEEECCCCeEEeeecC-C---CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC---c-ce
Confidence            36789999998877 55544 2   11222222 45 555443321       14677778  6777766532   1 11


Q ss_pred             eEEEECCEEEEEccCCCC---CCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCC-CeEEEEeCCCCc
Q 045821          206 DSFVMDGKIYIRCSASAA---TSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSG-TKLMMWQKESRE  281 (352)
Q Consensus       206 ~~~~~~g~iyv~GG~~~~---~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~-~~v~~yd~~~~~  281 (352)
                      ....-+|+.+++.+....   .....++.+|  ++++..+.......... .+...+.+|+.+...+ ..++ ++  +++
T Consensus       220 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~-~~~~sdg~~~~~~~~~~~~l~-~~--~g~  293 (347)
T 2gop_A          220 YAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQ-AKIKDGKVYFTLFEEGSVNLY-IW--DGE  293 (347)
T ss_dssp             EEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEE-EEEETTEEEEEEEETTEEEEE-EE--SSS
T ss_pred             eeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCC-ccEEcCcEEEEEecCCcEEEE-Ec--CCc
Confidence            222446654333333221   1234788998  66676664322111111 1222234777766554 3566 66  344


Q ss_pred             eEEc
Q 045821          282 WSPV  285 (352)
Q Consensus       282 W~~~  285 (352)
                      ...+
T Consensus       294 ~~~~  297 (347)
T 2gop_A          294 IKPI  297 (347)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            4444

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=89.02  E-value=11  Score=32.86  Aligned_cols=62  Identities=10%  Similarity=0.199  Sum_probs=38.0

Q ss_pred             CCEEEEEecCC---------CCeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEcCCceEEEEEcCCc
Q 045821          258 DDALYVLDQSS---------GTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCSAVVIDVGNI  323 (352)
Q Consensus       258 ~~~l~~~gg~~---------~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~d~~~~  323 (352)
                      ++.+|+....+         ...+++||..+.+  .+..++... -...++..-+..+|+.++ ..+.+||.++.
T Consensus       265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~--~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ--RVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE--EEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred             CCeEEEEEccCCCcccccCCCceEEEEECCCCc--EEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence            47888875411         2489999998865  344343321 111222223567888876 77889998875

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=88.80  E-value=3.5  Score=37.26  Aligned_cols=143  Identities=9%  Similarity=0.137  Sum_probs=75.4

Q ss_pred             CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEE-ECCE-EEEEccCCCCCCceEEEEEeCCCCcee---e
Q 045821          167 NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFV-MDGK-IYIRCSASAATSHVCALVYEPSTDSWL---H  241 (352)
Q Consensus       167 ~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~g~-iyv~GG~~~~~~~~~i~~yd~~~~~W~---~  241 (352)
                      ++.||+.-..   ..+.++|+.++..+.+...  ...-.+.++ -+|+ ||+..... ......+..++.. ..|.   .
T Consensus       149 ~g~Lyv~d~~---~~I~~id~~~~~v~~~~~~--~~~P~~ia~d~~G~~lyvad~~~-~~~~~~v~~~~~~-g~~~~~~~  221 (430)
T 3tc9_A          149 HNHLYLVGEQ---HPTRLIDFEKEYVSTVYSG--LSKVRTICWTHEADSMIITNDQN-NNDRPNNYILTRE-SGFKVITE  221 (430)
T ss_dssp             EEEEEEEEBT---EEEEEEETTTTEEEEEECC--CSCEEEEEECTTSSEEEEEECCS-CTTSEEEEEEEGG-GTSCSEEE
T ss_pred             CCeEEEEeCC---CcEEEEECCCCEEEEEecC--CCCcceEEEeCCCCEEEEEeCCC-CcccceEEEEeCC-Cceeeeee
Confidence            3689988643   5788999999888776531  111122222 2454 99984322 1222245556653 3333   2


Q ss_pred             cCCCCCCCCCCcEEEE-CCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEE--eCCEEEEEc-CCceEEE
Q 045821          242 ADANMASGWRGPAVVV-DDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVA--IGKTIFVIG-KGCSAVV  317 (352)
Q Consensus       242 ~~~~~~~~~~~~~~~~-~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~--~~~~i~v~g-G~~~~~~  317 (352)
                      +.. ... -++.++.- ++.||+..-..+ .|++||+++..-..+...+..  .....++.  .++.||+.- +...++.
T Consensus       222 l~~-~~~-p~giavdp~~g~lyv~d~~~~-~V~~~~~~~~~~~~~~~~~~~--~~P~gia~~pdG~~lyv~d~~~~~I~~  296 (430)
T 3tc9_A          222 LTK-GQN-CNGAETHPINGELYFNSWNAG-QVFRYDFTTQETTPLFTIQDS--GWEFHIQFHPSGNYAYIVVVNQHYILR  296 (430)
T ss_dssp             EEE-CSS-CCCEEECTTTCCEEEEETTTT-EEEEEETTTTEEEEEEECSSS--SCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ecc-CCC-ceEEEEeCCCCEEEEEECCCC-EEEEEECCCCcEEEEEEcCCC--CcceeEEEcCCCCEEEEEECCCCEEEE
Confidence            221 111 11222322 678888765443 899999998766444433321  11123333  244588875 3445666


Q ss_pred             EEcC
Q 045821          318 IDVG  321 (352)
Q Consensus       318 ~d~~  321 (352)
                      +|..
T Consensus       297 ~~~d  300 (430)
T 3tc9_A          297 SDYD  300 (430)
T ss_dssp             EEEE
T ss_pred             EeCC
Confidence            6654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=88.77  E-value=0.25  Score=43.85  Aligned_cols=145  Identities=8%  Similarity=0.018  Sum_probs=57.5

Q ss_pred             eEEECCEEEEEeCCCCCCceEEEeCCCCc--EEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCC--c
Q 045821          163 CGVLNQKIYCIGGLGDTHSWDVYDPRTNN--WKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTD--S  238 (352)
Q Consensus       163 ~~~~~~~iyv~gG~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~--~  238 (352)
                      .++.++.+|+.+..   ..+.++|..+++  |+.-.    .......++.++++|+.++.++     .++++|..++  .
T Consensus         5 P~v~~~~v~~gs~d---g~v~a~d~~tG~~~W~~~~----~~~~s~p~~~~g~~~v~~s~dg-----~l~a~d~~tG~~~   72 (369)
T 2hz6_A            5 VTLPETLLFVSTLD---GSLHAVSKRTGSIKWTLKE----DPVLQVPTHVEEPAFLPDPNDG-----SLYTLGSKNNEGL   72 (369)
T ss_dssp             ---CTTEEEEEETT---SEEEEEETTTCCEEEEEEC----CCSCCCC-----CCEEECTTTC-----CEEEC-----CCS
T ss_pred             CeeeCCEEEEEcCC---CEEEEEECCCCCEEEEecC----CCceecceEcCCCEEEEeCCCC-----EEEEEECCCCcee
Confidence            34456778776532   568999988774  87543    1112233455777888754332     4888888544  4


Q ss_pred             eeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCc--eEEccCCCCCcCCCCceEEEeCCEEEEEcCCceEE
Q 045821          239 WLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESRE--WSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCSAV  316 (352)
Q Consensus       239 W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~  316 (352)
                      |+.-............+..++.+|+ |+..+ .++.+|+++++  |+.-....       ...+..++.||+-+....+.
T Consensus        73 w~~~~~~~~~~~~sp~~~~~~~v~~-g~~dg-~v~a~D~~tG~~~w~~~~~~~-------~~~~p~~~~v~~~~~dg~v~  143 (369)
T 2hz6_A           73 TKLPFTIPELVQASPCRSSDGILYM-GKKQD-IWYVIDLLTGEKQQTLSSAFA-------DSLSPSTSLLYLGRTEYTIT  143 (369)
T ss_dssp             EECSCCHHHHHTTCSCC-----CCC-CEEEE-EEEEECCC-----------------------------EEEEEEEEEEE
T ss_pred             eeeeccCccccccCceEecCCEEEE-EeCCC-EEEEEECCCCcEEEEecCCCc-------ccccccCCEEEEEecCCEEE
Confidence            6532110000011112223555543 33332 78899988654  64322111       01122455555544333455


Q ss_pred             EEEcCCc--ccccc
Q 045821          317 VIDVGNI--GNIGG  328 (352)
Q Consensus       317 ~~d~~~~--~w~~~  328 (352)
                      .+|+++.  .|...
T Consensus       144 a~d~~tG~~~W~~~  157 (369)
T 2hz6_A          144 MYDTKTRELRWNAT  157 (369)
T ss_dssp             CCCSSSSSCCCEEE
T ss_pred             EEECCCCCEEEeEe
Confidence            6887644  47653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=88.58  E-value=0.084  Score=50.02  Aligned_cols=33  Identities=15%  Similarity=0.235  Sum_probs=30.6

Q ss_pred             CCCcHHHHHHhhccC-ccccchhhhhhhhhhccc
Q 045821           19 SGLPDDIALFCLARV-PRRYHAVLKCVSSRWRGL   51 (352)
Q Consensus        19 ~~lp~dl~~~il~r~-p~~~~~~l~~v~k~W~~l   51 (352)
                      +.||+|++.+|++++ |.++..+.+.|||+|+.+
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            479999999999999 899999999999999865

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=88.51  E-value=11  Score=36.02  Aligned_cols=100  Identities=10%  Similarity=0.122  Sum_probs=49.3

Q ss_pred             ceEEEeCCCCcE-EEecCCCCc---ccce--eEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCC----
Q 045821          181 SWDVYDPRTNNW-KLHTEPNIF---TEIE--DSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGW----  250 (352)
Q Consensus       181 ~v~~yd~~t~~W-~~~~~~~~~---~~~~--~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~----  250 (352)
                      .+.++|..+.+- ..+......   ....  .+..-+|++++..... ......++.+|..+.+...+-......+    
T Consensus       229 ~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~-~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~  307 (723)
T 1xfd_A          229 SLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNR-AQNVSILTLCDATTGVCTKKHEDESEAWLHRQ  307 (723)
T ss_dssp             EEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEET-TSCEEEEEEEETTTCCEEEEEEEECSSCCCCC
T ss_pred             EEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcC-CCCeEEEEEEeCCCCcceEEEEeccCCEEecc
Confidence            788899888763 444422111   1111  1222378766553322 2233478899998887655421111111    


Q ss_pred             -CCcEEEECCE-EEEE-ecCCC-----CeEEEEe-CCCCc
Q 045821          251 -RGPAVVVDDA-LYVL-DQSSG-----TKLMMWQ-KESRE  281 (352)
Q Consensus       251 -~~~~~~~~~~-l~~~-gg~~~-----~~v~~yd-~~~~~  281 (352)
                       ......-+|+ |++. +...+     ..++.+| ..+..
T Consensus       308 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~  347 (723)
T 1xfd_A          308 NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS  347 (723)
T ss_dssp             CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS
T ss_pred             CCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCC
Confidence             1233334555 5554 32222     2688888 45544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=88.44  E-value=4.7  Score=40.97  Aligned_cols=142  Identities=11%  Similarity=0.039  Sum_probs=76.4

Q ss_pred             CeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceE-EEeCCCCcEEEecCCCCcccceeEEEECCEE
Q 045821          136 SEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWD-VYDPRTNNWKLHTEPNIFTEIEDSFVMDGKI  214 (352)
Q Consensus       136 ~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~-~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~i  214 (352)
                      ..++.++..+++...+...+..+....... +++.+++++.  ...++ +||..+..-+.+. .........+..-+|+.
T Consensus       317 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~--~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~  392 (1045)
T 1k32_A          317 GQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR--EGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKF  392 (1045)
T ss_dssp             TEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET--TEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSE
T ss_pred             CEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC--CCceEEEEECCCCCceEec-CCccceeeeEECCCCCE
Confidence            467888887776555543332122222222 5554444433  25778 8999888766654 11111111222236766


Q ss_pred             EEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCC---------CCeEEEEeCCCCceEEc
Q 045821          215 YIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSS---------GTKLMMWQKESREWSPV  285 (352)
Q Consensus       215 yv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~---------~~~v~~yd~~~~~W~~~  285 (352)
                      .++++..     ..++.+|..+++-..+...........+..-+++.+++++..         ...+++||..+++...+
T Consensus       393 la~~~~~-----~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l  467 (1045)
T 1k32_A          393 AVVANDR-----FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA  467 (1045)
T ss_dssp             EEEEETT-----SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC
T ss_pred             EEEECCC-----CeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEe
Confidence            6664433     268899998887766532222222223334466655554331         14799999998875555


Q ss_pred             c
Q 045821          286 G  286 (352)
Q Consensus       286 ~  286 (352)
                      .
T Consensus       468 ~  468 (1045)
T 1k32_A          468 T  468 (1045)
T ss_dssp             S
T ss_pred             e
Confidence            4

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=88.37  E-value=15  Score=33.78  Aligned_cols=181  Identities=8%  Similarity=0.068  Sum_probs=84.8

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecC
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTE  197 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~  197 (352)
                      ++..++.++.      ...+.++|........+.....+.  .+++.. ++..++.++.+  ..+.++|..+..-..+..
T Consensus       273 d~~~l~~~~~------d~~i~~w~~~~~~~~~~~~h~~~v--~~~~~~~~~~~l~t~~~d--~~i~~w~~~~~~~~~~~~  342 (577)
T 2ymu_A          273 DGQTIASASD------DKTVKLWNRNGQLLQTLTGHSSSV--WGVAFSPDGQTIASASDD--KTVKLWNRNGQHLQTLTG  342 (577)
T ss_dssp             TSSEEEEEET------TSCEEEEETTSCEEEEECCCSSCE--EEEEECTTSSEEEEEETT--SCEEEEETTSCEEEEECC
T ss_pred             CCCEEEEEeC------CCEEEEEeCCCcEEEEEecCCCCe--EEEEECCCCCEEEEEeCC--CeEEEEeCCCCeeEEEeC
Confidence            4445555543      234677776655444443221111  122222 45555666544  567888887665444432


Q ss_pred             CCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeC
Q 045821          198 PNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQK  277 (352)
Q Consensus       198 ~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~  277 (352)
                      .. ......+..-+++..+.|+.++     .+..||.....-..+... .......++..+++.++.++.++ .+.+||.
T Consensus       343 ~~-~~v~~~~~s~~g~~l~~~~~dg-----~v~~~~~~~~~~~~~~~~-~~~v~~~~~s~dg~~l~~~~~d~-~v~~~~~  414 (577)
T 2ymu_A          343 HS-SSVWGVAFSPDGQTIASASDDK-----TVKLWNRNGQLLQTLTGH-SSSVRGVAFSPDGQTIASASDDK-TVKLWNR  414 (577)
T ss_dssp             CS-SCEEEEEECTTSSEEEEEETTS-----EEEEEETTCCEEEEEECC-SSCEEEEEECTTSSCEEEEETTS-EEEEECT
T ss_pred             CC-CCEEEEEECCCCCEEEEEeCCC-----EEEEEcCCCCEEEEecCC-CCCeEEEEECCCCCEEEEEeCCC-EEEEEeC
Confidence            11 1111112223677777765442     466777654433333221 11101111223667777777665 8899997


Q ss_pred             CCCceEEccCCCCCcCCCCceEE-EeCCEEEEEcCCc-eEEEEEcC
Q 045821          278 ESREWSPVGRLSTLLTRPPCKLV-AIGKTIFVIGKGC-SAVVIDVG  321 (352)
Q Consensus       278 ~~~~W~~~~~~~~~~~~~~~~~~-~~~~~i~v~gG~~-~~~~~d~~  321 (352)
                      ....-..+.....    ...++. ..+++.++.++.+ .+.+||..
T Consensus       415 ~~~~~~~~~~~~~----~v~~~~~s~d~~~l~~~~~d~~v~~w~~~  456 (577)
T 2ymu_A          415 NGQLLQTLTGHSS----SVWGVAFSPDDQTIASASDDKTVKLWNRN  456 (577)
T ss_dssp             TCCEEEEEECCSS----CEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CCCEEEEecCCCC----CeEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence            6544444332211    111222 2245555555444 34467654

>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A

Probab=88.23  E-value=9  Score=30.94  Aligned_cols=148  Identities=9%  Similarity=0.101  Sum_probs=78.4

Q ss_pred             eeeEEECCEEEEEeCCCCCCceEEEeCCCCc-E--EEecCC-CC-cccceeEEEE--CCEEEEEccCCCCCCceEEEEEe
Q 045821          161 FPCGVLNQKIYCIGGLGDTHSWDVYDPRTNN-W--KLHTEP-NI-FTEIEDSFVM--DGKIYIRCSASAATSHVCALVYE  233 (352)
Q Consensus       161 ~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~-W--~~~~~~-~~-~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd  233 (352)
                      -+++..++++|++-|    ..+++++..... .  ..|... +. +...-++...  ++++|++-|..       .|+||
T Consensus        34 DAi~~~~g~~~fFkg----~~~Wr~~~~~~~~~~P~~I~~~wp~lp~~IDAA~~~~~~~k~yfFkG~~-------yW~y~  102 (218)
T 1gen_A           34 DGIAQIRGEIFFFKD----RFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNE-------YWIYS  102 (218)
T ss_dssp             SEEEEETTEEEEEET----TEEEEESSTTSCCEEEEEGGGTCTTSCSCCSEEEEETTTTEEEEEETTE-------EEEEE
T ss_pred             eEEEeCCCcEEEEEC----CEEEEEeCCCCccCCCEEHHHhcCCCCCCccEEEEECCCCEEEEEeCCE-------EEEEc
Confidence            345556899999999    678888765422 1  122211 11 1122233333  68999996543       88998


Q ss_pred             CCCCc--e-eecCC-CCCC--CCCCcEEE--ECCEEEEEecCCCCeEEEEeCCCCceEE-----cc-CCCCCcCCCCceE
Q 045821          234 PSTDS--W-LHADA-NMAS--GWRGPAVV--VDDALYVLDQSSGTKLMMWQKESREWSP-----VG-RLSTLLTRPPCKL  299 (352)
Q Consensus       234 ~~~~~--W-~~~~~-~~~~--~~~~~~~~--~~~~l~~~gg~~~~~v~~yd~~~~~W~~-----~~-~~~~~~~~~~~~~  299 (352)
                      ..+..  . +.+.. ..+.  ...-+++.  .++++|++-|.   ..|+||..+++-..     +. ..+. .+...-++
T Consensus       103 ~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG~---~ywr~d~~~~~v~~gyPr~i~~~w~g-~p~~idaA  178 (218)
T 1gen_A          103 ASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD---KFWRYNEVKKKMDPGFPKLIADAWNA-IPDNLDAV  178 (218)
T ss_dssp             TTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEETT---EEEEEETTTTEECSSCCEEHHHHSSS-CCSSCSEE
T ss_pred             CccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEECC---EEEEEECccccccCCCCcchhhccCC-CCCCCCEE
Confidence            52110  0 01111 0111  11122333  36899999886   89999988764321     11 0111 01122233


Q ss_pred             EEe--CCEEEEEcCCceEEEEEcCCcc
Q 045821          300 VAI--GKTIFVIGKGCSAVVIDVGNIG  324 (352)
Q Consensus       300 ~~~--~~~i~v~gG~~~~~~~d~~~~~  324 (352)
                      ...  ++++|.|-|. ..+-||..+..
T Consensus       179 f~~~~~g~~YfFkg~-~y~~~~~~~~~  204 (218)
T 1gen_A          179 VDLQGGGHSYFFKGA-YYLKLENQSLK  204 (218)
T ss_dssp             EECTTTCEEEEEETT-EEEEEETTEEE
T ss_pred             EEEcCCCcEEEEECC-EEEEEECCcee
Confidence            444  3899999876 45667776543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=87.81  E-value=11  Score=31.39  Aligned_cols=136  Identities=10%  Similarity=-0.029  Sum_probs=67.6

Q ss_pred             CceEEEeCCCCcEEEecCCCCcccceeEE--EECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEE
Q 045821          180 HSWDVYDPRTNNWKLHTEPNIFTEIEDSF--VMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVV  257 (352)
Q Consensus       180 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~--~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~  257 (352)
                      ..|.++|..+++...+-..........++  .-+++..+.|+.++     .+..+|..+++-...-.  .+.........
T Consensus        45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg-----~v~iw~~~~~~~~~~~~--~h~~~~~~~~~  117 (318)
T 4ggc_A           45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA-----EVQLWDVQQQKRLRNMT--SHSARVGSLSW  117 (318)
T ss_dssp             TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEE--CCSSCEEEEEE
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCC-----cEEEeecCCceeEEEec--CccceEEEeec
Confidence            67889999998765543222222211222  23677778876553     57788887775433211  11111122344


Q ss_pred             CCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEcCCc-eEEEEEcCCcc
Q 045821          258 DDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGC-SAVVIDVGNIG  324 (352)
Q Consensus       258 ~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~-~~~~~d~~~~~  324 (352)
                      ++.+++.|+..+ .+..++..+........... ...........+++.++.|+.+ .+.++|+.+..
T Consensus       118 ~~~~l~s~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  183 (318)
T 4ggc_A          118 NSYILSSGSRSG-HIHHHDVRVAEHHVATLSGH-SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE  183 (318)
T ss_dssp             ETTEEEEEETTS-EEEEEETTSSSCEEEEEECC-SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred             CCCEEEEEecCC-ceEeeecCCCceeEEEEcCc-cCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence            566666666655 66666666544322211110 0011111122344455555444 45678877543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=87.70  E-value=18  Score=34.65  Aligned_cols=108  Identities=5%  Similarity=-0.231  Sum_probs=51.2

Q ss_pred             eEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCC---CCCCCeEEEEECCCCeeEecCCCCCc--c
Q 045821           84 CCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWS---EDATSEVYCYDASMNTWTDAAPMSTA--R  158 (352)
Q Consensus        84 ~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~~d~~t~~W~~~~~~~~~--r  158 (352)
                      .++.+|.  .++.-..+.................-+++..+++..+..   ......++++|..+++-+.+......  .
T Consensus        38 ~i~~~d~--~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~  115 (723)
T 1xfd_A           38 TVRLWNV--ETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAK  115 (723)
T ss_dssp             CEEEBCG--GGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCC
T ss_pred             CEEEEEC--CCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcccccc
Confidence            4566687  666554444322100001112222235554455432221   12347899999998876555543221  1


Q ss_pred             eeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEec
Q 045821          159 CYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHT  196 (352)
Q Consensus       159 ~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~  196 (352)
                      .......-+|+..+++..   ..++++|..++.-.++.
T Consensus       116 ~~~~~~SPdG~~la~~~~---~~i~~~~~~~g~~~~~~  150 (723)
T 1xfd_A          116 LQYAGWGPKGQQLIFIFE---NNIYYCAHVGKQAIRVV  150 (723)
T ss_dssp             CSBCCBCSSTTCEEEEET---TEEEEESSSSSCCEEEE
T ss_pred             ccccEECCCCCEEEEEEC---CeEEEEECCCCceEEEe
Confidence            111111114433333322   46788888877666554

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=87.43  E-value=14  Score=32.15  Aligned_cols=196  Identities=11%  Similarity=0.008  Sum_probs=93.4

Q ss_pred             CCeEEEEECCCCeeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcc--cceeEEEEC
Q 045821          135 TSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFT--EIEDSFVMD  211 (352)
Q Consensus       135 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~--~~~~~~~~~  211 (352)
                      ...+.++|+.+.+-........+ . .+++.- ++++.+.++.   ..+.+++..++............  ....+..-+
T Consensus       156 d~~i~iwd~~~~~~~~~~~~~~~-V-~~v~fspdg~~l~s~s~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspd  230 (365)
T 4h5i_A          156 PAIMRIIDPSDLTEKFEIETRGE-V-KDLHFSTDGKVVAYITG---SSLEVISTVTGSCIARKTDFDKNWSLSKINFIAD  230 (365)
T ss_dssp             SCEEEEEETTTTEEEEEEECSSC-C-CEEEECTTSSEEEEECS---SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEET
T ss_pred             CCEEEEeECCCCcEEEEeCCCCc-e-EEEEEccCCceEEeccc---eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCC
Confidence            35788899998775432211111 1 122222 5666665553   55778888777654332221111  112233458


Q ss_pred             CEEEEEccCCCCCCceEEEEEeCCCCceeecCCC-CCCCCCCc-E--EEECCEEEEEecCCCCeEEEEeCCCCceEEccC
Q 045821          212 GKIYIRCSASAATSHVCALVYEPSTDSWLHADAN-MASGWRGP-A--VVVDDALYVLDQSSGTKLMMWQKESREWSPVGR  287 (352)
Q Consensus       212 g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~-~~~~~~~~-~--~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~  287 (352)
                      ++.++.++... .....+..+|............ ........ +  +.-++++++.|+.++ .|.+||..+.+-.  ..
T Consensus       231 g~~l~~~s~d~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~-~V~iwd~~~~~~~--~~  306 (365)
T 4h5i_A          231 DTVLIAASLKK-GKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN-SIALVKLKDLSMS--KI  306 (365)
T ss_dssp             TEEEEEEEESS-SCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS-CEEEEETTTTEEE--EE
T ss_pred             CCEEEEEecCC-cceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCC-EEEEEECCCCcEE--EE
Confidence            88888765443 2223566677665554332110 01111111 1  234788888888776 8999999876532  21


Q ss_pred             CCCCcCCCCceE-EEeCCEEEEEcCCce-EEEEEcCCcccccceEEeccCCCCCC
Q 045821          288 LSTLLTRPPCKL-VAIGKTIFVIGKGCS-AVVIDVGNIGNIGGIMVSSSIPKLND  340 (352)
Q Consensus       288 ~~~~~~~~~~~~-~~~~~~i~v~gG~~~-~~~~d~~~~~w~~~~~~~~~~~~~~~  340 (352)
                      ........-.++ ...++++++-|+.++ +-++|+..+- ....+++..+.++.-
T Consensus       307 ~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~-~~~~s~~~~l~kl~~  360 (365)
T 4h5i_A          307 FKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNY-ANYTSMKQKISKLEH  360 (365)
T ss_dssp             ETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTT-TC-------------
T ss_pred             ecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC-cCccCccccceeeec
Confidence            111001111122 234777777776665 4489986543 344566666655543

>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*

Probab=87.06  E-value=16  Score=32.50  Aligned_cols=116  Identities=9%  Similarity=0.027  Sum_probs=66.3

Q ss_pred             CCCCCcceeeeeEEECCEEEEEeCCCCC---Cce--EEEeCC----CCcE-EEecC-CCCcccceeEEEECCEEEEEccC
Q 045821          152 APMSTARCYFPCGVLNQKIYCIGGLGDT---HSW--DVYDPR----TNNW-KLHTE-PNIFTEIEDSFVMDGKIYIRCSA  220 (352)
Q Consensus       152 ~~~~~~r~~~~~~~~~~~iyv~gG~~~~---~~v--~~yd~~----t~~W-~~~~~-~~~~~~~~~~~~~~g~iyv~GG~  220 (352)
                      +..+..-.-|+.+.+++.-|++|=...+   ..+  ..|...    ...- +.++. ........+.-.++|.||+..-.
T Consensus       278 ~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyYdgvLyLtTRg  357 (670)
T 3ju4_A          278 GLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYYDGVLYLITRG  357 (670)
T ss_dssp             CSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGGGCTTEEEEEEEEETTEEEEEEEE
T ss_pred             ccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEecC
Confidence            3344445568888898877787754333   332  222111    1112 23321 11223334556789999998533


Q ss_pred             CCC-CCceEEEEEeCCCCceeecCCCCCCCCC-CcEEEECCEEEEEecC
Q 045821          221 SAA-TSHVCALVYEPSTDSWLHADANMASGWR-GPAVVVDDALYVLDQS  267 (352)
Q Consensus       221 ~~~-~~~~~i~~yd~~~~~W~~~~~~~~~~~~-~~~~~~~~~l~~~gg~  267 (352)
                      ... .....+.+-+.....|..+.-+...... .+.+..++.|||+|..
T Consensus       358 t~~~~~GS~L~rs~d~Gq~w~slrfp~nvHhtnlPFakvgD~l~mFgsE  406 (670)
T 3ju4_A          358 TRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSE  406 (670)
T ss_dssp             SCTTSCCCEEEEESSTTSSCEEEECTTCCCSSCCCEEEETTEEEEEEEC
T ss_pred             cCCCCCcceeeeecccCCchhheeccccccccCCCcceeCCEEEEEecc
Confidence            322 3334778888888999988654222222 2246789999999863

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=86.96  E-value=16  Score=32.33  Aligned_cols=147  Identities=10%  Similarity=0.070  Sum_probs=78.0

Q ss_pred             CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCceeec-C
Q 045821          167 NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTDSWLHA-D  243 (352)
Q Consensus       167 ~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~-~  243 (352)
                      ++.+++.|+.+  ..+.+||..+.+-...-..+.......++.+  ++++++.|+.++     .+..||..+.+.... .
T Consensus       181 ~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~  253 (437)
T 3gre_A          181 EKSLLVALTNL--SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRG-----IIDIWDIRFNVLIRSWS  253 (437)
T ss_dssp             SCEEEEEEETT--SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTS-----CEEEEETTTTEEEEEEB
T ss_pred             CCCEEEEEeCC--CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCC-----eEEEEEcCCccEEEEEe
Confidence            46777777765  6889999988764322111111111122223  677777766553     488888877654321 1


Q ss_pred             CCCCCCCCCcE--EE------ECCEEEEEecCCCCeEEEEeCCCCceEEc-cCC----------CCC------------c
Q 045821          244 ANMASGWRGPA--VV------VDDALYVLDQSSGTKLMMWQKESREWSPV-GRL----------STL------------L  292 (352)
Q Consensus       244 ~~~~~~~~~~~--~~------~~~~l~~~gg~~~~~v~~yd~~~~~W~~~-~~~----------~~~------------~  292 (352)
                      .  ..  ....  +.      .++.+++.|+.++ .+.+||..+++-... ...          |..            .
T Consensus       254 ~--~~--~~~v~~~~~~~~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  328 (437)
T 3gre_A          254 F--GD--HAPITHVEVCQFYGKNSVIVVGGSSKT-FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS  328 (437)
T ss_dssp             C--TT--CEEEEEEEECTTTCTTEEEEEEESTTE-EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS
T ss_pred             c--CC--CCceEEEEeccccCCCccEEEEEcCCC-cEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc
Confidence            1  00  1111  11      1345666666555 899999987663322 100          000            0


Q ss_pred             CCCCceEEEeCCEEEEEcCCce-EEEEEcCCccc
Q 045821          293 TRPPCKLVAIGKTIFVIGKGCS-AVVIDVGNIGN  325 (352)
Q Consensus       293 ~~~~~~~~~~~~~i~v~gG~~~-~~~~d~~~~~w  325 (352)
                      .....++...++++++.|+.+. +.++|+.+..-
T Consensus       329 ~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~  362 (437)
T 3gre_A          329 LNALSTISVSNDKILLTDEATSSIVMFSLNELSS  362 (437)
T ss_dssp             GGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGG
T ss_pred             CCceEEEEECCceEEEecCCCCeEEEEECCCccc
Confidence            0111233444777777777654 55899887653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=86.95  E-value=12  Score=33.68  Aligned_cols=143  Identities=12%  Similarity=0.154  Sum_probs=74.8

Q ss_pred             CEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCcee---ecCC
Q 045821          168 QKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWL---HADA  244 (352)
Q Consensus       168 ~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~---~~~~  244 (352)
                      +.||+.-..   ..+.++|+.+++.+.+... ...-...++.-+|+||+..... ......+..++... .+.   .++.
T Consensus       153 g~Lyv~D~~---~~I~~id~~~g~v~~~~~~-~~~P~giavd~dG~lyVad~~~-~~~~~gv~~~~~~~-~~~~~~~~~~  226 (433)
T 4hw6_A          153 DDLYWVGQR---DAFRHVDFVNQYVDIKTTN-IGQCADVNFTLNGDMVVVDDQS-SDTNTGIYLFTRAS-GFTERLSLCN  226 (433)
T ss_dssp             CEEEEECBT---SCEEEEETTTTEEEEECCC-CSCEEEEEECTTCCEEEEECCS-CTTSEEEEEECGGG-TTCCEEEEEE
T ss_pred             CEEEEEeCC---CCEEEEECCCCEEEEeecC-CCCccEEEECCCCCEEEEcCCC-CcccceEEEEECCC-Ceeccccccc
Confidence            789998643   6789999998888776531 1111112233366799984221 11123455565432 222   1111


Q ss_pred             CCCCCCCCcEEEE-CCEEEEEecCCCCeEEEEeCCCCce-EEccCCCCCcCCCCceEEE--eCCEEEEEc-CCceEEEEE
Q 045821          245 NMASGWRGPAVVV-DDALYVLDQSSGTKLMMWQKESREW-SPVGRLSTLLTRPPCKLVA--IGKTIFVIG-KGCSAVVID  319 (352)
Q Consensus       245 ~~~~~~~~~~~~~-~~~l~~~gg~~~~~v~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~--~~~~i~v~g-G~~~~~~~d  319 (352)
                       .. .-.+.++.- ++.||+.....+ .|++||+.+++. ..+......  ...+.++.  .++.||+.- +...++.+|
T Consensus       227 -~~-~P~giavd~~~G~lyv~d~~~~-~V~~~d~~~g~~~~~~~~~~~~--~~~~~ia~dpdG~~LYvad~~~~~I~~~~  301 (433)
T 4hw6_A          227 -AR-GAKTCAVHPQNGKIYYTRYHHA-MISSYDPATGTLTEEEVMMDTK--GSNFHIVWHPTGDWAYIIYNGKHCIYRVD  301 (433)
T ss_dssp             -CS-SBCCCEECTTTCCEEECBTTCS-EEEEECTTTCCEEEEEEECSCC--SSCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             -cC-CCCEEEEeCCCCeEEEEECCCC-EEEEEECCCCeEEEEEeccCCC--CCcccEEEeCCCCEEEEEeCCCCEEEEEe
Confidence             11 111223333 678887765443 899999987665 333222211  11122333  345688875 445666766


Q ss_pred             cC
Q 045821          320 VG  321 (352)
Q Consensus       320 ~~  321 (352)
                      ..
T Consensus       302 ~d  303 (433)
T 4hw6_A          302 YN  303 (433)
T ss_dssp             BC
T ss_pred             CC
Confidence            54

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=86.62  E-value=18  Score=32.55  Aligned_cols=227  Identities=9%  Similarity=-0.006  Sum_probs=110.9

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE--CCEEEEEeCCCCCCCCCCeEEEEECCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL--GKNAYLLGGCGWSEDATSEVYCYDASM  145 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t  145 (352)
                      ++.||+.-.    . ..+..+|+  .++....+....    .+. ..++.-  ++.||+......  .....+..++...
T Consensus       149 ~g~Lyv~d~----~-~~I~~id~--~~~~v~~~~~~~----~~P-~~ia~d~~G~~lyvad~~~~--~~~~~v~~~~~~g  214 (430)
T 3tc9_A          149 HNHLYLVGE----Q-HPTRLIDF--EKEYVSTVYSGL----SKV-RTICWTHEADSMIITNDQNN--NDRPNNYILTRES  214 (430)
T ss_dssp             EEEEEEEEB----T-EEEEEEET--TTTEEEEEECCC----SCE-EEEEECTTSSEEEEEECCSC--TTSEEEEEEEGGG
T ss_pred             CCeEEEEeC----C-CcEEEEEC--CCCEEEEEecCC----CCc-ceEEEeCCCCEEEEEeCCCC--cccceEEEEeCCC
Confidence            367777732    1 56778899  877777665421    122 222222  345998864322  1223456666543


Q ss_pred             CeeE---ecCCCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEE-ECCE-EEEEc
Q 045821          146 NTWT---DAAPMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFV-MDGK-IYIRC  218 (352)
Q Consensus       146 ~~W~---~~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~g~-iyv~G  218 (352)
                      . +.   .++.+..   .+.+++.  ++.||+.--..  ..+++||+.+..-..+...+....-.+.++ -+|+ ||+.-
T Consensus       215 ~-~~~~~~l~~~~~---p~giavdp~~g~lyv~d~~~--~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d  288 (430)
T 3tc9_A          215 G-FKVITELTKGQN---CNGAETHPINGELYFNSWNA--GQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV  288 (430)
T ss_dssp             T-SCSEEEEEECSS---CCCEEECTTTCCEEEEETTT--TEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred             c-eeeeeeeccCCC---ceEEEEeCCCCEEEEEECCC--CEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence            2 22   2222222   2334443  57888875432  679999998775433322222111122333 2555 89984


Q ss_pred             cCCCCCCceEEEEEeCC--CCceee---cCCCC-----------CCCCCCc--EEEE----------CCEEEEEecCCCC
Q 045821          219 SASAATSHVCALVYEPS--TDSWLH---ADANM-----------ASGWRGP--AVVV----------DDALYVLDQSSGT  270 (352)
Q Consensus       219 G~~~~~~~~~i~~yd~~--~~~W~~---~~~~~-----------~~~~~~~--~~~~----------~~~l~~~gg~~~~  270 (352)
                      ..     ...|++++..  +.+...   +....           ......+  .+.+          ++.||+.....+ 
T Consensus       289 ~~-----~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~-  362 (430)
T 3tc9_A          289 VN-----QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENH-  362 (430)
T ss_dssp             TT-----TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGT-
T ss_pred             CC-----CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCc-
Confidence            22     1246665443  332211   11000           0011111  2333          367888865433 


Q ss_pred             eEEEEeCCCCceEEccCCC-----C---------CcCCCCceEEEe--CCEEEEEc-CCceEEEEEcC
Q 045821          271 KLMMWQKESREWSPVGRLS-----T---------LLTRPPCKLVAI--GKTIFVIG-KGCSAVVIDVG  321 (352)
Q Consensus       271 ~v~~yd~~~~~W~~~~~~~-----~---------~~~~~~~~~~~~--~~~i~v~g-G~~~~~~~d~~  321 (352)
                      .|.++|++ +....+....     .         .....-.+++.-  ++.|||.- +...+..++++
T Consensus       363 ~I~~i~~~-G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          363 CIRILTPQ-GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEEEECTT-SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEEECCC-CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            89999965 4665554221     0         001122345544  57888875 34455566665

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=85.81  E-value=17  Score=31.74  Aligned_cols=158  Identities=13%  Similarity=0.091  Sum_probs=78.1

Q ss_pred             CCEEEEEEecCC--------CCceeEEEecCCCCCCCeeEeccCCC--cccCCcceEEEEEC---C--EEEEEeCCCCCC
Q 045821           68 ETWIYAFCRDNK--------LERVCCYVLDPNSTRRSWKMIHELPA--RTLRRKGMGFEVLG---K--NAYLLGGCGWSE  132 (352)
Q Consensus        68 ~~~l~~~gg~~~--------~~~~~~~~~d~~~~~~~w~~~~~~~~--~~~~~~~~~~~~~~---~--~iyv~GG~~~~~  132 (352)
                      ++.+|+..|.-.        ...-.++.||+++.+.+-.++.....  ......-|.+....   +  .||++.-...  
T Consensus        60 ~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~--  137 (355)
T 3sre_A           60 NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGS--  137 (355)
T ss_dssp             TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTT--
T ss_pred             CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCC--
Confidence            567777654211        12224778888322445555543211  00123345555432   3  5777754321  


Q ss_pred             CCCCeEEEEECCCCeeEecCCCC---CcceeeeeEEECCEEEEEeCC--CC------------C-CceEEEeCCCCcEEE
Q 045821          133 DATSEVYCYDASMNTWTDAAPMS---TARCYFPCGVLNQKIYCIGGL--GD------------T-HSWDVYDPRTNNWKL  194 (352)
Q Consensus       133 ~~~~~~~~~d~~t~~W~~~~~~~---~~r~~~~~~~~~~~iyv~gG~--~~------------~-~~v~~yd~~t~~W~~  194 (352)
                      ...-.++.+|+.++....+....   .-+..-..+.-+|.+|+-+..  ..            . ..+++||+.  +.+.
T Consensus       138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~  215 (355)
T 3sre_A          138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRV  215 (355)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEE
T ss_pred             CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEE
Confidence            23445677788777665554332   223333444447888886531  11            1 568888884  3443


Q ss_pred             ecCCCCcccceeEEEE-CC-EEEEEccCCCCCCceEEEEEeCCC
Q 045821          195 HTEPNIFTEIEDSFVM-DG-KIYIRCSASAATSHVCALVYEPST  236 (352)
Q Consensus       195 ~~~~~~~~~~~~~~~~-~g-~iyv~GG~~~~~~~~~i~~yd~~~  236 (352)
                      +.+  ........+.. ++ .+|+.-..     ...+++|+...
T Consensus       216 ~~~--~l~~pNGia~spDg~~lYvadt~-----~~~I~~~~~~~  252 (355)
T 3sre_A          216 VAE--GFDFANGINISPDGKYVYIAELL-----AHKIHVYEKHA  252 (355)
T ss_dssp             EEE--EESSEEEEEECTTSSEEEEEEGG-----GTEEEEEEECT
T ss_pred             eec--CCcccCcceECCCCCEEEEEeCC-----CCeEEEEEECC
Confidence            321  11111223332 44 78887321     23688888753

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=85.22  E-value=13  Score=31.62  Aligned_cols=137  Identities=11%  Similarity=0.061  Sum_probs=71.5

Q ss_pred             CCeEEEEECCCCeeEecCCCCCcceeeeeEEE-CC-EEEEEeCC-----------------C------C-CCceEEEeCC
Q 045821          135 TSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQ-KIYCIGGL-----------------G------D-THSWDVYDPR  188 (352)
Q Consensus       135 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~gG~-----------------~------~-~~~v~~yd~~  188 (352)
                      ...++++|..+++...+...+.   ....+.. ++ .|++....                 +      . ...++++|..
T Consensus        84 ~~~l~~~~~~~g~~~~l~~~~~---~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~  160 (347)
T 2gop_A           84 VSEIWVADLETLSSKKILEAKN---IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE  160 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEESE---EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred             cceEEEEECCCCceEEEEcCCC---ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence            4568999998887666544332   1112221 44 44444311                 0      0 1568889999


Q ss_pred             CCcE-EEecCCCCcccceeEEEECCEEEEEccCCCCC---C-ceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCE-EE
Q 045821          189 TNNW-KLHTEPNIFTEIEDSFVMDGKIYIRCSASAAT---S-HVCALVYEPSTDSWLHADANMASGWRGPAVVVDDA-LY  262 (352)
Q Consensus       189 t~~W-~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~---~-~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-l~  262 (352)
                      +++. +.+.. +  ........-+| +++.+......   . ...++.+|  ++++..+...   . ......-+|+ |+
T Consensus       161 ~~~~~~~l~~-~--~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~---~-~~~~~spdg~~l~  230 (347)
T 2gop_A          161 SEEVIEEFEK-P--RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK---V-SFYAVDSDGERIL  230 (347)
T ss_dssp             TTEEEEEEEE-E--TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE---E-SEEEEEECSSCEE
T ss_pred             CCeEEeeecC-C--CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC---c-ceeeECCCCCEEE
Confidence            8887 66653 2  22222233355 55554332211   2 45788888  6667666432   1 1112244554 55


Q ss_pred             EEecCC------CCeEEEEeCCCCceEEcc
Q 045821          263 VLDQSS------GTKLMMWQKESREWSPVG  286 (352)
Q Consensus       263 ~~gg~~------~~~v~~yd~~~~~W~~~~  286 (352)
                      +.+...      ...++.+|  ++++..+.
T Consensus       231 ~~~~~~~~~~~~~~~l~~~d--~~~~~~l~  258 (347)
T 2gop_A          231 LYGKPEKKYMSEHNKLYIYD--GKEVMGIL  258 (347)
T ss_dssp             EEECCSSSCCCSSCEEEEEC--SSCEEESS
T ss_pred             EEEccccCCccccceEEEEC--CCceEecc
Confidence            444322      24799999  66666654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=85.15  E-value=19  Score=31.69  Aligned_cols=103  Identities=4%  Similarity=0.043  Sum_probs=52.2

Q ss_pred             CCEEEEEeCCCCCCceEEEeCCCC--cEEEecCCCCc---c-cceeEEEE--CC-EEEEEccCCCCCCceEEEEEeCCCC
Q 045821          167 NQKIYCIGGLGDTHSWDVYDPRTN--NWKLHTEPNIF---T-EIEDSFVM--DG-KIYIRCSASAATSHVCALVYEPSTD  237 (352)
Q Consensus       167 ~~~iyv~gG~~~~~~v~~yd~~t~--~W~~~~~~~~~---~-~~~~~~~~--~g-~iyv~GG~~~~~~~~~i~~yd~~~~  237 (352)
                      ++.+++.| .+  ..+.+||..+.  .+..+...+..   + ....++.+  ++ ++++.|+.++     .+..||..+.
T Consensus       188 ~~~~l~s~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg-----~i~iwd~~~~  259 (447)
T 3dw8_B          188 DYETYLSA-DD--LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG-----TIRLCDMRAS  259 (447)
T ss_dssp             TSSEEEEE-CS--SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS-----CEEEEETTTC
T ss_pred             CCCEEEEe-CC--CeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC-----eEEEEECcCC
Confidence            45666655 32  78899999842  23322111111   1 11112222  44 6777766553     5788888776


Q ss_pred             ce-----eecCCCCCC-----------CCCCcEEEECCEEEEEecCCCCeEEEEeCCC
Q 045821          238 SW-----LHADANMAS-----------GWRGPAVVVDDALYVLDQSSGTKLMMWQKES  279 (352)
Q Consensus       238 ~W-----~~~~~~~~~-----------~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~  279 (352)
                      +-     ..+......           ........-++++++.++. + .+.+||..+
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~-~v~iwd~~~  315 (447)
T 3dw8_B          260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-L-SVKVWDLNM  315 (447)
T ss_dssp             SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-S-EEEEEETTC
T ss_pred             ccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-C-eEEEEeCCC
Confidence            53     222221100           0001112236667777766 4 999999975

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=84.83  E-value=27  Score=33.16  Aligned_cols=211  Identities=8%  Similarity=-0.048  Sum_probs=115.2

Q ss_pred             eEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE--CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceee
Q 045821           84 CCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL--GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYF  161 (352)
Q Consensus        84 ~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~  161 (352)
                      .+...|.  .+..-..+.+.+   ....-.+++..  ++.||+..-      ....++++++.......+..... ....
T Consensus        16 ~I~~i~l--~~~~~~~~~~~~---~~~~~~~l~~d~~~~~lywtD~------~~~~I~r~~~~g~~~~~v~~~g~-~~P~   83 (628)
T 4a0p_A           16 DIRRISL--ETNNNNVAIPLT---GVKEASALDFDVTDNRIYWTDI------SLKTISRAFMNGSALEHVVEFGL-DYPE   83 (628)
T ss_dssp             EEEEEES--SCTTCEEECCCC---SCSCEEEEEEETTTTEEEEEET------TTTEEEEEETTSCSCEEEECSSC-SCCC
T ss_pred             cEEEEEC--CCCCcceEEEcC---CCCceEEEEEECCCCEEEEEEC------CCCeEEEEECCCCCcEEEEeCCC-CCcc
Confidence            4455566  544433333333   11222344443  688999853      24678888887655544432221 1122


Q ss_pred             eeEE--ECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCC
Q 045821          162 PCGV--LNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTD  237 (352)
Q Consensus       162 ~~~~--~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~  237 (352)
                      .+++  .+++||+.-...  ..++++++....=+.+.. .....-...++.  +|.||+.--    +....|++.++...
T Consensus        84 GlAvD~~~~~LY~tD~~~--~~I~v~~~dG~~~~~l~~-~~l~~P~~iavdp~~G~lY~tD~----g~~~~I~r~~~dG~  156 (628)
T 4a0p_A           84 GMAVDWLGKNLYWADTGT--NRIEVSKLDGQHRQVLVW-KDLDSPRALALDPAEGFMYWTEW----GGKPKIDRAAMDGS  156 (628)
T ss_dssp             EEEEETTTTEEEEEETTT--TEEEEEETTSTTCEEEEC-SSCCCEEEEEEETTTTEEEEEEC----SSSCEEEEEETTSC
T ss_pred             eEEEEeCCCEEEEEECCC--CEEEEEecCCCcEEEEEe-CCCCCcccEEEccCCCeEEEeCC----CCCCEEEEEeCCCC
Confidence            3344  368999986533  688999987654333321 111111233443  689999731    11237888888655


Q ss_pred             ceeecCCCCCCCCCCcEEEE---CCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEcC-Cc
Q 045821          238 SWLHADANMASGWRGPAVVV---DDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGK-GC  313 (352)
Q Consensus       238 ~W~~~~~~~~~~~~~~~~~~---~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG-~~  313 (352)
                      .-+.+....   .....+.+   +++||+.....+ .|+++|++...=+.+...    ....+++++.++.||+.-- ..
T Consensus       157 ~~~~l~~~~---~~P~GlalD~~~~~LY~aD~~~~-~I~~~d~dG~~~~v~~~~----l~~P~glav~~~~ly~tD~~~~  228 (628)
T 4a0p_A          157 ERTTLVPNV---GRANGLTIDYAKRRLYWTDLDTN-LIESSNMLGLNREVIADD----LPHPFGLTQYQDYIYWTDWSRR  228 (628)
T ss_dssp             SCEEEECSC---SSEEEEEEETTTTEEEEEETTTT-EEEEEETTSCSCEEEEEC----CSCEEEEEEETTEEEEEETTTT
T ss_pred             ceEEEECCC---CCcceEEEccccCEEEEEECCCC-EEEEEcCCCCceEEeecc----CCCceEEEEECCEEEEecCCCC
Confidence            544432211   11122332   588999986554 899999876433333211    2334678888899998753 44


Q ss_pred             eEEEEEcC
Q 045821          314 SAVVIDVG  321 (352)
Q Consensus       314 ~~~~~d~~  321 (352)
                      .+..+|..
T Consensus       229 ~I~~~dk~  236 (628)
T 4a0p_A          229 SIERANKT  236 (628)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEECC
Confidence            55567754

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=84.20  E-value=19  Score=30.80  Aligned_cols=145  Identities=10%  Similarity=0.031  Sum_probs=80.0

Q ss_pred             ECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEec--CCCCCcceeeeeEE--ECCEEEEEeCCCCCCceEEEeCCCCcEE
Q 045821          118 LGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDA--APMSTARCYFPCGV--LNQKIYCIGGLGDTHSWDVYDPRTNNWK  193 (352)
Q Consensus       118 ~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~--~~~~~~r~~~~~~~--~~~~iyv~gG~~~~~~v~~yd~~t~~W~  193 (352)
                      .++.||+.-.      ....++++++....-+.+  ..+..|+   ..++  .++.||+..-.. ...++++++....=+
T Consensus        89 ~~g~ly~~d~------~~~~I~~~~~dG~~~~~l~~~~~~~P~---giavdp~~g~ly~td~~~-~~~I~r~~~dG~~~~  158 (318)
T 3sov_A           89 LGEKLYWTDS------ETNRIEVSNLDGSLRKVLFWQELDQPR---AIALDPSSGFMYWTDWGE-VPKIERAGMDGSSRF  158 (318)
T ss_dssp             TTTEEEEEET------TTTEEEEEETTSCSCEEEECSSCSSEE---EEEEEGGGTEEEEEECSS-SCEEEEEETTSCSCE
T ss_pred             CCCeEEEEEC------CCCEEEEEECCCCcEEEEEeCCCCCcc---EEEEeCCCCEEEEEecCC-CCEEEEEEcCCCCeE
Confidence            4789998853      235788898875433333  2233332   2333  258999976211 167899988754323


Q ss_pred             EecCCCCcccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCceeecCC-CCCCCCCCcEEEECCEEEEEecCCCC
Q 045821          194 LHTEPNIFTEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTDSWLHADA-NMASGWRGPAVVVDDALYVLDQSSGT  270 (352)
Q Consensus       194 ~~~~~~~~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~l~~~gg~~~~  270 (352)
                      .+.... ...-...++-  +++||+.-..     ...|+++|.....-+.+.. ....+  ...++.++.+|+..-.. .
T Consensus       159 ~~~~~~-l~~Pnglavd~~~~~lY~aD~~-----~~~I~~~d~dG~~~~~~~~~~~~~P--~glav~~~~lywtd~~~-~  229 (318)
T 3sov_A          159 IIINSE-IYWPNGLTLDYEEQKLYWADAK-----LNFIHKSNLDGTNRQAVVKGSLPHP--FALTLFEDILYWTDWST-H  229 (318)
T ss_dssp             EEECSS-CSCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEECSCCSCE--EEEEEETTEEEEEETTT-T
T ss_pred             EEEECC-CCCccEEEEeccCCEEEEEECC-----CCEEEEEcCCCCceEEEecCCCCCc--eEEEEeCCEEEEEecCC-C
Confidence            332111 1111233333  6899998422     2378899886433333321 11111  12345688999885433 4


Q ss_pred             eEEEEeCCCCc
Q 045821          271 KLMMWQKESRE  281 (352)
Q Consensus       271 ~v~~yd~~~~~  281 (352)
                      .|.++|+.+++
T Consensus       230 ~V~~~~~~~G~  240 (318)
T 3sov_A          230 SILACNKYTGE  240 (318)
T ss_dssp             EEEEEETTTCC
T ss_pred             eEEEEECCCCC
Confidence            99999996554

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=83.55  E-value=29  Score=34.61  Aligned_cols=104  Identities=9%  Similarity=-0.121  Sum_probs=52.1

Q ss_pred             CEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEE--ECCEEEEEccCCCCCCceEEEEEeCCCCceeec---
Q 045821          168 QKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFV--MDGKIYIRCSASAATSHVCALVYEPSTDSWLHA---  242 (352)
Q Consensus       168 ~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~--~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~---  242 (352)
                      ++..+.++.+  ..+.++|..+.+-...-...   ....++.  -+++..+.|+.++     .+..||..+.+-...   
T Consensus        69 g~~L~S~s~D--~~v~lWd~~~~~~~~~~~~~---~~V~~v~~sp~g~~l~sgs~dg-----~V~lwd~~~~~~~~~~i~  138 (902)
T 2oaj_A           69 GIYLVVINAK--DTVYVLSLYSQKVLTTVFVP---GKITSIDTDASLDWMLIGLQNG-----SMIVYDIDRDQLSSFKLD  138 (902)
T ss_dssp             TTEEEEEETT--CEEEEEETTTCSEEEEEECS---SCEEEEECCTTCSEEEEEETTS-----CEEEEETTTTEEEEEEEC
T ss_pred             CCEEEEEECc--CeEEEEECCCCcEEEEEcCC---CCEEEEEECCCCCEEEEEcCCC-----cEEEEECCCCccccceec
Confidence            4444444433  78889999887543211111   1111222  2566666655442     477888877653211   


Q ss_pred             ------CCCCCCCCCCcEEEE---CCEEEEEecCCCCeEEEEeCCCCceE
Q 045821          243 ------DANMASGWRGPAVVV---DDALYVLDQSSGTKLMMWQKESREWS  283 (352)
Q Consensus       243 ------~~~~~~~~~~~~~~~---~~~l~~~gg~~~~~v~~yd~~~~~W~  283 (352)
                            .....+...-..+.+   ++.++++|+.++ .+ +||..+++-.
T Consensus       139 ~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg-~v-lWd~~~~~~~  186 (902)
T 2oaj_A          139 NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYV-TL-TYSLVENEIK  186 (902)
T ss_dssp             CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSC-EE-EEETTTTEEE
T ss_pred             cccccccccccCCCCeEEEEEccCCCCEEEEEeCCC-cE-EEECCCCceE
Confidence                  010111111112322   235666776655 78 9999987643

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=83.27  E-value=21  Score=30.69  Aligned_cols=64  Identities=8%  Similarity=0.062  Sum_probs=36.1

Q ss_pred             CCEEEEEccCCCCCCceE-EEEEeCCCCceee-cCCC-CCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCC
Q 045821          211 DGKIYIRCSASAATSHVC-ALVYEPSTDSWLH-ADAN-MASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESR  280 (352)
Q Consensus       211 ~g~iyv~GG~~~~~~~~~-i~~yd~~~~~W~~-~~~~-~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~  280 (352)
                      +|++.+.|+.++     . +..+|..+.+-.. +... ........+..-++++++.|+.++ .+.+||....
T Consensus       206 ~g~~l~s~s~d~-----~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~-~v~iw~~~~~  272 (355)
T 3vu4_A          206 KSDMVATCSQDG-----TIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKW-TLHVFEIFND  272 (355)
T ss_dssp             TSSEEEEEETTC-----SEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTC-EEEEEESSCC
T ss_pred             CCCEEEEEeCCC-----CEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCC-EEEEEEccCC
Confidence            677777766553     3 7788887654332 2110 111101111223677777777766 8999998754

>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A

Probab=82.66  E-value=5.6  Score=37.82  Aligned_cols=145  Identities=11%  Similarity=0.088  Sum_probs=75.3

Q ss_pred             eEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCC-ee--Eec----CCCCCcceeeeeEEE--CCEEEEEeCCCCCCceE
Q 045821          113 MGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMN-TW--TDA----APMSTARCYFPCGVL--NQKIYCIGGLGDTHSWD  183 (352)
Q Consensus       113 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~-~W--~~~----~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~  183 (352)
                      =++....+++|+|-|        ..+|+++.... ..  ..+    +.+|. .. -++...  ++++|++-|    +.++
T Consensus       447 DAit~~rg~~yfFKg--------~~yWr~~~~~~~~~~P~~Is~~wp~LP~-~I-DAA~~~~~~~k~yFFkG----~~yW  512 (631)
T 1ck7_A          447 DGIAQIRGEIFFFKD--------RFIWRTVTPRDKPMGPLLVATFWPELPE-KI-DAVYEAPQEEKAVFFAG----NEYW  512 (631)
T ss_dssp             SEEEECSSSEEEECS--------SEEEEESCTTSCCEEEEEGGGTCTTSCS-SC-SBCCEETTTTEEEEEET----TEEE
T ss_pred             ceeEecCCcEEEEcC--------CEEEEEcCCCCCCCCceeccccCCCCCc-cc-eEEEEECCCCEEEEEec----CEEE
Confidence            345667889999976        45677665432 11  111    11221 11 122222  578999988    7889


Q ss_pred             EEeCCCC--cE-EEecC--CCCcc-cceeEEE--ECCEEEEEccCCCCCCceEEEEEeCCCCceee-----cCCC-CCCC
Q 045821          184 VYDPRTN--NW-KLHTE--PNIFT-EIEDSFV--MDGKIYIRCSASAATSHVCALVYEPSTDSWLH-----ADAN-MASG  249 (352)
Q Consensus       184 ~yd~~t~--~W-~~~~~--~~~~~-~~~~~~~--~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~-----~~~~-~~~~  249 (352)
                      +|+..+-  .+ +.|..  .|... ..-++..  .++++|++-|.       ..|+||..+++-..     +... +...
T Consensus       513 ry~~~~l~~GYPk~Is~~G~P~~~~~IDAAf~~~~~gktYFFkG~-------~ywryd~~~~~vd~gYPk~i~~~w~G~p  585 (631)
T 1ck7_A          513 IYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD-------KFWRYNEVKKKMDPGFPKLIADAWNAIP  585 (631)
T ss_dssp             EEETTEECTTCCEEGGGGTCCTTCCCCCBCCCCTTTCEEEEEETT-------EEEEEETTTTEECTTCCEETTTSCSSCC
T ss_pred             EECCCccccCCCccchhcCCCCCCCcceeEEEecCCCeEEEEECC-------EEEEEcCCcccccCCCCcchHhhcCCCC
Confidence            9986321  01 12221  11111 1112332  36899999654       38999976553211     1100 0101


Q ss_pred             CC-CcEEEE--CCEEEEEecCCCCeEEEEeCCCCc
Q 045821          250 WR-GPAVVV--DDALYVLDQSSGTKLMMWQKESRE  281 (352)
Q Consensus       250 ~~-~~~~~~--~~~l~~~gg~~~~~v~~yd~~~~~  281 (352)
                      .. -+++..  ++++|++-|.   ..|+||.....
T Consensus       586 ~~iDAAf~~~~~g~~YFFkG~---~Ywr~d~~~~~  617 (631)
T 1ck7_A          586 DNLDAVVDLQGGGHSYFFKGA---YYLKLENQSLK  617 (631)
T ss_dssp             TTCCEEECCTTSCBCEEEETT---EEECCBTTBTT
T ss_pred             CCCcEeEEEcCCCeEEEEECC---EEEEEeCccce
Confidence            11 122333  3789999886   78999886543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	352
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	5e-08
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	3e-07
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	2e-06
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	7e-06
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	1e-04
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	0.001

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 5e-08
 Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 2/101 (1%)

Query: 118 LGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLG 177
           +G+  Y  GG  +   + S +  Y+ S  TW   A +   R      V+   +Y +GG  
Sbjct: 3   VGRLIYTAGG--YFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRN 60

Query: 178 DTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRC 218
           ++   +      + +   T                 + +  
Sbjct: 61  NSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVID 101

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 3e-07
 Identities = 47/226 (20%), Positives = 68/226 (30%), Gaps = 7/226 (3%)

Query: 35  RRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLDETWIYAFCRDNKLERVCCYVLDPNSTR 94
               + L C +               R +  +     + +        +           
Sbjct: 66  NTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHN--SVERYE 123

Query: 95  RSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPM 154
                 H +     RR G+G  VL +  Y +GG   +    +   CY    N W     M
Sbjct: 124 PERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNR-LNSAECYYPERNEWRMITAM 182

Query: 155 STARCYFPCGVLNQKIYCIGGL---GDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMD 211
           +T R      VL+  IY  GG       +S + YD  T  W                V  
Sbjct: 183 NTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQ 242

Query: 212 GKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVV 257
           G+IY+       T       Y+P TD+W      M SG  G  V V
Sbjct: 243 GRIYVLGGYDGHTFLDSVECYDPDTDTWSEV-TRMTSGRSGVGVAV 287

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 27/188 (14%), Positives = 54/188 (28%), Gaps = 18/188 (9%)

Query: 96  SWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGW-----SEDATSEVYCYDASMNTWTD 150
            W    +LP   +       E       +           S    +    +D S    +D
Sbjct: 10  RWGPTIDLP---IVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD 66

Query: 151 AAPMSTARCYFPCGVL---NQKIYCIGGLGDTHSWDVYDPRTNN-WKLHTEPNIFTEIED 206
                T    F  G+    N +I   GG     +  +YD  +++                
Sbjct: 67  RTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS-LYDSSSDSWIPGPDMQVARGYQSS 125

Query: 207 SFVMDGKIYIRCSASAATSHVC-ALVYEPSTDSWLHA----DANMASGWRGPAVVVDDAL 261
           + + DG+++    + +         VY PS+ +W          M +  +      D+  
Sbjct: 126 ATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHA 185

Query: 262 YVLDQSSG 269
           ++     G
Sbjct: 186 WLFGWKKG 193

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 45.2 bits (105), Expect = 7e-06
 Identities = 14/139 (10%), Positives = 26/139 (18%), Gaps = 11/139 (7%)

Query: 57  WCAYRRKHNLDETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFE 116
                      +                    +                  +   G  F 
Sbjct: 245 KILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFI 304

Query: 117 VLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL--NQKIYCIG 174
             G      G              Y    +T+    P S  R Y    +L  + +++  G
Sbjct: 305 TGG---QRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGG 361

Query: 175 GLGD------THSWDVYDP 187
           G              ++ P
Sbjct: 362 GGLCGDCTTNHFDAQIFTP 380

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 15/121 (12%), Positives = 29/121 (23%), Gaps = 16/121 (13%)

Query: 143 ASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGL---------GDTHSWDVYDPRTNNWK 193
             +  W     +            + ++               G       +DP T    
Sbjct: 6   PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS 65

Query: 194 LHTEPNI---FTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGW 250
             T             S   +G+I +     A        +Y+ S+DSW+       +  
Sbjct: 66  DRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVARG 121

Query: 251 R 251
            
Sbjct: 122 Y 122

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 23/235 (9%), Positives = 57/235 (24%), Gaps = 33/235 (14%)

Query: 58  CAYRRKHNLDETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELP-ARTLRRKGMGFE 116
             Y+    + +  ++                  + + ++W  +        L     G  
Sbjct: 120 RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY 179

Query: 117 VLGKNAYLL----GGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYC 172
               +A+L     G    +  +T+  + Y +       A    + R   P  +    +  
Sbjct: 180 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMY 239

Query: 173 -----------IGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIED----------SFVMD 211
                                          +  T PN                   + D
Sbjct: 240 DAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPD 299

Query: 212 GKIYI------RCSASAATSHVCALVYEPSTDSW-LHADANMASGWRGPAVVVDD 259
           G  +I            +T      +Y P  D++      ++   +   ++++ D
Sbjct: 300 GSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPD 354

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	352
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.96
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.93
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.64
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.73
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.6
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	97.5
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.44
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.28
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	97.22
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	97.13
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.01
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	96.92
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	96.91
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	96.86
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	96.83
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	96.8
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	96.62
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	96.54
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	96.47
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.47
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	96.46
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	96.44
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	96.4
d1qhua1	192	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	96.36
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	96.32
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.28
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	96.18
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	96.12
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	96.06
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	96.04
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	96.03
d1tbga_	340	beta1-subunit of the signal-transducing G protein	95.98
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	95.83
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	95.73
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	95.73
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	95.69
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	95.66
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	95.5
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	95.49
d1tbga_	340	beta1-subunit of the signal-transducing G protein	94.83
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	94.75
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	94.64
d1qhua1	192	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	94.45
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	94.44
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	94.14
d1gena_	200	Gelatinase A (MMP-2), C-terminal domain {Human (Ho	94.11
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	93.9
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	93.64
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	92.68
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.31
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.11
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	91.98
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	91.74
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	91.46
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	91.36
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	91.34
d1hxna_	210	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	91.04
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	90.5
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	89.64
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	89.54
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	89.53
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	89.23
d1gena_	200	Gelatinase A (MMP-2), C-terminal domain {Human (Ho	88.34
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	87.46
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	86.6
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	86.36
d1hxna_	210	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	85.81
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	85.4
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	83.46
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	82.22

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-38  Score=275.76  Aligned_cols=258  Identities=21%  Similarity=0.320  Sum_probs=224.9

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCC---CCCCCeEEEEECC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWS---EDATSEVYCYDAS  144 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~~d~~  144 (352)
                      +..||++||.+......+++||+  .+++|++++++|   .+|.+|+++.++++||++||....   ....+++++||+.
T Consensus         4 g~~iyv~GG~~~~~~~~~~~yd~--~t~~W~~~~~~p---~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~   78 (288)
T d1zgka1           4 GRLIYTAGGYFRQSLSYLEAYNP--SNGTWLRLADLQ---VPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPM   78 (288)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEET--TTTEEEECCCCS---SCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred             CCEEEEECCcCCCCCceEEEEEC--CCCeEEECCCCC---CccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccc
Confidence            67899999986554456889999  999999999988   689999999999999999996422   2346799999999


Q ss_pred             CCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCC---CceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCC
Q 045821          145 MNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDT---HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSAS  221 (352)
Q Consensus       145 t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~---~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~  221 (352)
                      +++|+.++++|.+|..|+++.+++++|++||....   +.++.||+.++.|...+.++..+..+.++.+++++|++||..
T Consensus        79 ~~~w~~~~~~p~~r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~  158 (288)
T d1zgka1          79 TNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFD  158 (288)
T ss_dssp             TTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred             cccccccccccceecceeccccceeeEEecceecccccceeeeeccccCccccccccccccccceeeeeeecceEecCcc
Confidence            99999999999999999999999999999997655   889999999999999998888888888999999999999988


Q ss_pred             CCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCC----CeEEEEeCCCCceEEccCCCCCcCCCCc
Q 045821          222 AATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSG----TKLMMWQKESREWSPVGRLSTLLTRPPC  297 (352)
Q Consensus       222 ~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~----~~v~~yd~~~~~W~~~~~~~~~~~~~~~  297 (352)
                      .......++.||+.+++|...+..+.......++..+++|+++||..+    ...++||+.+++|+.++.+|.  .|..+
T Consensus       159 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~r~~~  236 (288)
T d1zgka1         159 GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH--RRSAL  236 (288)
T ss_dssp             SSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS--CCBSC
T ss_pred             cccccceEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeecccCccC--cccce
Confidence            766677899999999999998776666666667789999999999665    578999999999999987776  57788


Q ss_pred             eEEEeCCEEEEEcCCc------eEEEEEcCCcccccceEEe
Q 045821          298 KLVAIGKTIFVIGKGC------SAVVIDVGNIGNIGGIMVS  332 (352)
Q Consensus       298 ~~~~~~~~i~v~gG~~------~~~~~d~~~~~w~~~~~~~  332 (352)
                      +++..+++|||+||.+      .+++||+++++|.....|+
T Consensus       237 ~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  277 (288)
T d1zgka1         237 GITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMT  277 (288)
T ss_dssp             EEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS
T ss_pred             EEEEECCEEEEEecCCCCeecceEEEEECCCCEEEECCCCC
Confidence            8889999999999954      3778999999998765553

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-33  Score=245.96  Aligned_cols=256  Identities=21%  Similarity=0.332  Sum_probs=216.3

Q ss_pred             cccchhhhhhhhhhcccccChhhHHHHhhCCCC--CCEEEEEEecCCC-----CceeEEEecCCCCCCCeeEeccCCCcc
Q 045821           35 RRYHAVLKCVSSRWRGLLHSEEWCAYRRKHNLD--ETWIYAFCRDNKL-----ERVCCYVLDPNSTRRSWKMIHELPART  107 (352)
Q Consensus        35 ~~~~~~l~~v~k~W~~l~~s~~~~~~~~~~~~~--~~~l~~~gg~~~~-----~~~~~~~~d~~~~~~~w~~~~~~~~~~  107 (352)
                      ..+...+....++|..+..   ++..|..|.+.  ++.||++||.+..     ....++.||+  .+++|.++++++   
T Consensus        18 ~~~~~~yd~~t~~W~~~~~---~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~--~~~~w~~~~~~p---   89 (288)
T d1zgka1          18 LSYLEAYNPSNGTWLRLAD---LQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNP--MTNQWSPCAPMS---   89 (288)
T ss_dssp             CCCEEEEETTTTEEEECCC---CSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEET--TTTEEEECCCCS---
T ss_pred             CceEEEEECCCCeEEECCC---CCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhccc--cccccccccccc---
Confidence            3445667777889999844   33456555543  8999999996421     1345789999  999999999988   


Q ss_pred             cCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCC---CceEE
Q 045821          108 LRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDT---HSWDV  184 (352)
Q Consensus       108 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~---~~v~~  184 (352)
                      .+|..++++.+++++|++||.... ...+.++.||+.+++|...+.++.+|..|+++..++++|++||....   ..++.
T Consensus        90 ~~r~~~~~~~~~~~i~~~gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~~~~~~~~  168 (288)
T d1zgka1          90 VPRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAEC  168 (288)
T ss_dssp             SCCBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEE
T ss_pred             ceecceeccccceeeEEecceecc-cccceeeeeccccCccccccccccccccceeeeeeecceEecCcccccccceEEE
Confidence            789999999999999999997654 55788999999999999999999999999999999999999998655   88999


Q ss_pred             EeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEE
Q 045821          185 YDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVL  264 (352)
Q Consensus       185 yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~  264 (352)
                      ||+.+++|...+.++..+..+.++..+++||++||..........+.||..+++|..+++.+..+..+.++..+++||++
T Consensus       169 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~  248 (288)
T d1zgka1         169 YYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVL  248 (288)
T ss_dssp             EETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEE
T ss_pred             eeccccccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEECCEEEEE
Confidence            99999999999888888888888999999999999887777779999999999999998766666666677889999999


Q ss_pred             ecCCC----CeEEEEeCCCCceEEccCCCCCcCCCCceEEE
Q 045821          265 DQSSG----TKLMMWQKESREWSPVGRLSTLLTRPPCKLVA  301 (352)
Q Consensus       265 gg~~~----~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~  301 (352)
                      ||.++    +++++||+++++|++++.||.  .|..+++++
T Consensus       249 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~--~R~~~~~~~  287 (288)
T d1zgka1         249 GGYDGHTFLDSVECYDPDTDTWSEVTRMTS--GRSGVGVAV  287 (288)
T ss_dssp             CCBCSSCBCCEEEEEETTTTEEEEEEECSS--CCBSCEEEE
T ss_pred             ecCCCCeecceEEEEECCCCEEEECCCCCC--CcEeEEEEE
Confidence            99765    679999999999999999987  466666654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.96  E-value=1.3e-28  Score=222.73  Aligned_cols=255  Identities=14%  Similarity=0.164  Sum_probs=177.1

Q ss_pred             hhhhcccccChhhHHHHhhCC--CCCCEEEEEEecCCCC-------ceeEEEecCCCCCCCeeEeccCCCcccCCcceEE
Q 045821           45 SSRWRGLLHSEEWCAYRRKHN--LDETWIYAFCRDNKLE-------RVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGF  115 (352)
Q Consensus        45 ~k~W~~l~~s~~~~~~~~~~~--~~~~~l~~~gg~~~~~-------~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~  115 (352)
                      ..+|...+..|..   +..++  ..+++||++||.....       ....++||+  .+++|..++.++.. ..+..++.
T Consensus         8 ~g~W~~~~~~p~~---~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~--~t~~w~~~~~~~~~-~~~~~~~~   81 (387)
T d1k3ia3           8 LGRWGPTIDLPIV---PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDP--STGIVSDRTVTVTK-HDMFCPGI   81 (387)
T ss_dssp             SCEEEEEEECSSC---CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECT--TTCCBCCCEEEECS-CCCSSCEE
T ss_pred             CCccCCcCCCCcc---ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEEC--CCCcEeecCCCCCC-cccceeEE
Confidence            4578877655532   22222  2288999999963211       224678999  99999988776632 22333443


Q ss_pred             EEE-CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCC----CceEEEeCCC
Q 045821          116 EVL-GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDT----HSWDVYDPRT  189 (352)
Q Consensus       116 ~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~----~~v~~yd~~t  189 (352)
                      +.. +++||++||.+     .+++++||+.+++|..+++|+.+|.+|+++.+ ++++|++||....    +++++||+.+
T Consensus        82 ~~~~~g~i~v~Gg~~-----~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3          82 SMDGNGQIVVTGGND-----AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             EECTTSCEEEECSSS-----TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             EEecCCcEEEeecCC-----CcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence            333 77899998854     35789999999999999999999999998888 6899999997543    8899999999


Q ss_pred             CcEEEecCCCCccc----------------------c----------------------------------------eeE
Q 045821          190 NNWKLHTEPNIFTE----------------------I----------------------------------------EDS  207 (352)
Q Consensus       190 ~~W~~~~~~~~~~~----------------------~----------------------------------------~~~  207 (352)
                      ++|+.++.+.....                      .                                        ..+
T Consensus       157 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (387)
T d1k3ia3         157 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNA  236 (387)
T ss_dssp             TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEE
T ss_pred             CceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccE
Confidence            99998864321100                      0                                        001


Q ss_pred             EE---ECCEEEEEccCCCCCCce---E-----EEEEeCCCCceeecCCCCCCCCCCcEEEE-CCEEEEEecCCC------
Q 045821          208 FV---MDGKIYIRCSASAATSHV---C-----ALVYEPSTDSWLHADANMASGWRGPAVVV-DDALYVLDQSSG------  269 (352)
Q Consensus       208 ~~---~~g~iyv~GG~~~~~~~~---~-----i~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~l~~~gg~~~------  269 (352)
                      +.   .++++|++||........   .     ++.++...++|..+...+..+..+.++++ +++||++||...      
T Consensus       237 ~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~  316 (387)
T d1k3ia3         237 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFED  316 (387)
T ss_dssp             EEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred             EEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCC
Confidence            11   268899999876533221   1     22223445678877765555555555554 789999999542      


Q ss_pred             ----CeEEEEeCCCCceEEccCCCCCcCCCCceEEEe--CCEEEEEcCC
Q 045821          270 ----TKLMMWQKESREWSPVGRLSTLLTRPPCKLVAI--GKTIFVIGKG  312 (352)
Q Consensus       270 ----~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~--~~~i~v~gG~  312 (352)
                          ..+++||+++++|++++.++.  .|..++.+.+  +++|||+||.
T Consensus       317 ~~~~~~ve~Ydp~~~~W~~~~~~~~--~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         317 STPVFTPEIYVPEQDTFYKQNPNSI--VRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             CSBCCCCEEEEGGGTEEEECCCCSS--CCCTTEEEEECTTSCEEEEECC
T ss_pred             CcEeceEEEEECCCCeEEECCCCCC--cccceEEEEECCCCEEEEEeCC
Confidence                357899999999999998886  4655554444  8899999984

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.93  E-value=7e-26  Score=204.52  Aligned_cols=233  Identities=15%  Similarity=0.173  Sum_probs=168.1

Q ss_pred             CCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCC-----CCCCCeEEEEECCCCeeEecCCCCCcceeee--eEE
Q 045821           93 TRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWS-----EDATSEVYCYDASMNTWTDAAPMSTARCYFP--CGV  165 (352)
Q Consensus        93 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~-----~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~--~~~  165 (352)
                      ..+.|+...++|   ..+..++++..+++||++||+...     ......+++||+.+++|..++.++.+|..++  .+.
T Consensus         7 ~~g~W~~~~~~p---~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~   83 (387)
T d1k3ia3           7 GLGRWGPTIDLP---IVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISM   83 (387)
T ss_dssp             TSCEEEEEEECS---SCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEE
T ss_pred             CCCccCCcCCCC---ccccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEE
Confidence            788999998888   445555566668999999997532     1234468899999999999888877765543  333


Q ss_pred             E-CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE-CCEEEEEccCCCCCC-ceEEEEEeCCCCceeec
Q 045821          166 L-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM-DGKIYIRCSASAATS-HVCALVYEPSTDSWLHA  242 (352)
Q Consensus       166 ~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~iyv~GG~~~~~~-~~~i~~yd~~~~~W~~~  242 (352)
                      . +++||++||.+. +++++||+.+++|+.+++++..+..++++.+ +|++|++||...... ..+++.||+.+++|+.+
T Consensus        84 ~~~g~i~v~Gg~~~-~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~  162 (387)
T d1k3ia3          84 DGNGQIVVTGGNDA-KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL  162 (387)
T ss_dssp             CTTSCEEEECSSST-TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred             ecCCcEEEeecCCC-cceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeec
Confidence            3 789999998765 7899999999999999999998888877766 789999998765443 45899999999999887


Q ss_pred             CCCCCC--------------------------------------------------------------CCCCcEEE---E
Q 045821          243 DANMAS--------------------------------------------------------------GWRGPAVV---V  257 (352)
Q Consensus       243 ~~~~~~--------------------------------------------------------------~~~~~~~~---~  257 (352)
                      +.....                                                              ...+.++.   .
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (387)
T d1k3ia3         163 PNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAV  242 (387)
T ss_dssp             TTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETT
T ss_pred             CCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeecc
Confidence            531100                                                              00001111   2


Q ss_pred             CCEEEEEecCCC-------CeEE-----EEeCCCCceEEccCCCCCcCCCCceEEEe-CCEEEEEcCCc-----------
Q 045821          258 DDALYVLDQSSG-------TKLM-----MWQKESREWSPVGRLSTLLTRPPCKLVAI-GKTIFVIGKGC-----------  313 (352)
Q Consensus       258 ~~~l~~~gg~~~-------~~v~-----~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~i~v~gG~~-----------  313 (352)
                      ++++|++||...       ....     .++...++|..++.+|.  .|..++.+.+ +++||++||..           
T Consensus       243 ~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~  320 (387)
T d1k3ia3         243 KGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF--ARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPV  320 (387)
T ss_dssp             TTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS--CCBSCEEEECTTSCEEEECCBSBCCTTCCCSBC
T ss_pred             CCceEEEEeccCCCCCcccceeecccccccccCCCceeecccccc--ccccceeeeccCCeEEEECCcccCccCCCCcEe
Confidence            578899988543       1112     22344567888888876  4666655555 78999999953           


Q ss_pred             -eEEEEEcCCcccccceEE
Q 045821          314 -SAVVIDVGNIGNIGGIMV  331 (352)
Q Consensus       314 -~~~~~d~~~~~w~~~~~~  331 (352)
                       .+.+||+++++|.....+
T Consensus       321 ~~ve~Ydp~~~~W~~~~~~  339 (387)
T d1k3ia3         321 FTPEIYVPEQDTFYKQNPN  339 (387)
T ss_dssp             CCCEEEEGGGTEEEECCCC
T ss_pred             ceEEEEECCCCeEEECCCC
Confidence             356899999999875443

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=5.5e-09  Score=60.02  Aligned_cols=39  Identities=23%  Similarity=0.283  Sum_probs=36.0

Q ss_pred             cCCCcHHHHHHhhccCccccchhhhhhhhhhcccccChh
Q 045821           18 ISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEE   56 (352)
Q Consensus        18 ~~~lp~dl~~~il~r~p~~~~~~l~~v~k~W~~l~~s~~   56 (352)
                      +..||+|++.+|++++|.+++.+++.|||+|+.+..++.
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~   39 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDES   39 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Confidence            467999999999999999999999999999999987764

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=3.8e-06  Score=58.81  Aligned_cols=43  Identities=23%  Similarity=0.291  Sum_probs=39.5

Q ss_pred             CCccCCCcHHHHHHhhccCccccchhhhhhhhhhcccccChhh
Q 045821           15 VPLISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEW   57 (352)
Q Consensus        15 ~~~~~~lp~dl~~~il~r~p~~~~~~l~~v~k~W~~l~~s~~~   57 (352)
                      ...+..||+|++..|+++|+..++.++..||++|+.+..++.+
T Consensus        16 ~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~l   58 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL   58 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHH
T ss_pred             cCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHH
Confidence            4567889999999999999999999999999999999888765

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.60  E-value=0.013  Score=48.53  Aligned_cols=142  Identities=8%  Similarity=0.107  Sum_probs=73.6

Q ss_pred             EEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCceeec-CCC
Q 045821          169 KIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTDSWLHA-DAN  245 (352)
Q Consensus       169 ~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~-~~~  245 (352)
                      .+++.|+.+  ..+.+||..+.+-...-.  .......++..  ++++++.|+.++     .+..||..+++-... ...
T Consensus       160 ~~l~sgs~d--~~i~i~d~~~~~~~~~~~--~~~~~i~~v~~~p~~~~l~~~~~d~-----~v~~~d~~~~~~~~~~~~~  230 (311)
T d1nr0a1         160 FRIISGSDD--NTVAIFEGPPFKFKSTFG--EHTKFVHSVRYNPDGSLFASTGGDG-----TIVLYNGVDGTKTGVFEDD  230 (311)
T ss_dssp             CEEEEEETT--SCEEEEETTTBEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEECBCT
T ss_pred             eeecccccc--cccccccccccccccccc--cccccccccccCccccccccccccc-----ccccccccccccccccccc
Confidence            356666654  678899998765433221  11111122223  667777765543     477888876654322 211


Q ss_pred             -CCCCCCCc---EEEE--CCEEEEEecCCCCeEEEEeCCCCceEE-ccCCCCCcCCCCceEEEeCCEEEEEcCCceEEEE
Q 045821          246 -MASGWRGP---AVVV--DDALYVLDQSSGTKLMMWQKESREWSP-VGRLSTLLTRPPCKLVAIGKTIFVIGKGCSAVVI  318 (352)
Q Consensus       246 -~~~~~~~~---~~~~--~~~l~~~gg~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~  318 (352)
                       .....+..   .+.+  +++.++.|+.++ .+.+||..+++-.. +.. .........++...++.|+..+....+.++
T Consensus       231 ~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg-~v~iwd~~t~~~~~~l~~-~~~~~~~~~~~~~~~~~l~s~s~dG~i~~w  308 (311)
T d1nr0a1         231 SLKNVAHSGSVFGLTWSPDGTKIASASADK-TIKIWNVATLKVEKTIPV-GTRIEDQQLGIIWTKQALVSISANGFINFV  308 (311)
T ss_dssp             TSSSCSSSSCEEEEEECTTSSEEEEEETTS-EEEEEETTTTEEEEEEEC-CSSGGGCEEEEEECSSCEEEEETTCCEEEE
T ss_pred             ccccccccccccccccCCCCCEEEEEeCCC-eEEEEECCCCcEEEEEEC-CCCccceEEEEEecCCEEEEEECCCEEEEE
Confidence             11111111   2222  567777787666 89999998876432 221 111111222333345666666554456678


Q ss_pred             EcC
Q 045821          319 DVG  321 (352)
Q Consensus       319 d~~  321 (352)
                      |++
T Consensus       309 d~d  311 (311)
T d1nr0a1         309 NPE  311 (311)
T ss_dssp             ETT
T ss_pred             eCC
Confidence            875

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.50  E-value=4.8e-06  Score=57.96  Aligned_cols=42  Identities=24%  Similarity=0.283  Sum_probs=36.8

Q ss_pred             CccCCCcHHHHHHhhccCccccchhhhhhhhhhccccc-Chhh
Q 045821           16 PLISGLPDDIALFCLARVPRRYHAVLKCVSSRWRGLLH-SEEW   57 (352)
Q Consensus        16 ~~~~~lp~dl~~~il~r~p~~~~~~l~~v~k~W~~l~~-s~~~   57 (352)
                      ..++.||+|+++.||+.|+..++.+++.||++|+.++. ++.+
T Consensus         4 D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~L   46 (100)
T d1nexb1           4 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL   46 (100)
T ss_dssp             CHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHH
T ss_pred             CchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHH
Confidence            35678999999999999999999999999999998874 4543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.44  E-value=0.02  Score=46.66  Aligned_cols=233  Identities=9%  Similarity=0.001  Sum_probs=121.2

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcc-cCCcceEEEEE--CCEEEEEeCCCCCCCCCCeEEEEECC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPART-LRRKGMGFEVL--GKNAYLLGGCGWSEDATSEVYCYDAS  144 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~  144 (352)
                      ++.||+.-.    ....+.+||+  ...--..++...... ........+..  .+..++...     .....+..++..
T Consensus        33 dg~i~VaD~----~n~rI~v~d~--~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~  101 (279)
T d1q7fa_          33 QNDIIVADT----NNHRIQIFDK--EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTER-----SPTHQIQIYNQY  101 (279)
T ss_dssp             TCCEEEEEG----GGTEEEEECT--TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEEC-----GGGCEEEEECTT
T ss_pred             CCCEEEEEC----CCCEEEEEeC--CCCEEEEecccCCCcccccccccccccccccccceecc-----CCcccccccccc
Confidence            677998843    2345677888  543223332221110 11122233333  233333321     123467778877


Q ss_pred             CCeeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEE-ECCEEEEEccCCC
Q 045821          145 MNTWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFV-MDGKIYIRCSASA  222 (352)
Q Consensus       145 t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~g~iyv~GG~~~  222 (352)
                      ...+..+.... -......++- ++.+|+.....  ..+.+|++....-..+............++ -++.+|+..... 
T Consensus       102 g~~~~~~~~~~-~~~p~~~avd~~G~i~v~~~~~--~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~-  177 (279)
T d1q7fa_         102 GQFVRKFGATI-LQHPRGVTVDNKGRIIVVECKV--MRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA-  177 (279)
T ss_dssp             SCEEEEECTTT-CSCEEEEEECTTSCEEEEETTT--TEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG-
T ss_pred             ccceeecCCCc-ccccceeccccCCcEEEEeecc--ceeeEeccCCceeecccccccccccceeeeccceeEEeeeccc-
Confidence            66665553221 1122233332 57888886543  568889887665444432222222222222 367899985332 


Q ss_pred             CCCceEEEEEeCCCCceeecCCCCCCCCCCcEEE--ECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEE
Q 045821          223 ATSHVCALVYEPSTDSWLHADANMASGWRGPAVV--VDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLV  300 (352)
Q Consensus       223 ~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~--~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~  300 (352)
                          ..++.||...+....+...- .......+.  -+|.||+.....+..|.+||++.+--..+..-..  .....+++
T Consensus       178 ----~~V~~~d~~G~~~~~~g~~g-~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~--~~~p~~va  250 (279)
T d1q7fa_         178 ----HCVKVFNYEGQYLRQIGGEG-ITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVK--HAQCFDVA  250 (279)
T ss_dssp             ----TEEEEEETTCCEEEEESCTT-TSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSC--CSCEEEEE
T ss_pred             ----cceeeeecCCceeeeecccc-cccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCCC--CCCEeEEE
Confidence                37899999877666664321 111122233  3678999876555579999986542222221110  11223443


Q ss_pred             -EeCCEEEEEcCCceEEEEEcCC
Q 045821          301 -AIGKTIFVIGKGCSAVVIDVGN  322 (352)
Q Consensus       301 -~~~~~i~v~gG~~~~~~~d~~~  322 (352)
                       ..++.|||..+.+++.+|.-.+
T Consensus       251 v~~dG~l~V~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         251 LMDDGSVVLASKDYRLYIYRYVQ  273 (279)
T ss_dssp             EETTTEEEEEETTTEEEEEECSC
T ss_pred             EeCCCcEEEEeCCCeEEEEEeee
Confidence             3477999988777777876543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.28  E-value=0.015  Score=48.19  Aligned_cols=193  Identities=10%  Similarity=-0.022  Sum_probs=92.4

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCcEEEec
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNNWKLHT  196 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~  196 (352)
                      ++..++.|+.+      ..+.+||..+.+......+......-..+.+  +++.++.+|.+....+.+++..+.+-  +.
T Consensus        69 ~g~~latg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~--~~  140 (311)
T d1nr0a1          69 SGYYCASGDVH------GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS--NG  140 (311)
T ss_dssp             TSSEEEEEETT------SEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB--CB
T ss_pred             CCCeEeccccC------ceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccc--cc
Confidence            56666677643      4578888887654221111110001111222  56666666644335567788776642  22


Q ss_pred             CCCCcccceeEEEE--CCE-EEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEE
Q 045821          197 EPNIFTEIEDSFVM--DGK-IYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLM  273 (352)
Q Consensus       197 ~~~~~~~~~~~~~~--~g~-iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~  273 (352)
                      .+......-..+.+  ++. +++.|+.++     .+..||..+.+-...-.............-++++++.|+.++ .+.
T Consensus       141 ~l~~h~~~v~~v~~~~~~~~~l~sgs~d~-----~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~-~v~  214 (311)
T d1nr0a1         141 NLTGQARAMNSVDFKPSRPFRIISGSDDN-----TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG-TIV  214 (311)
T ss_dssp             CCCCCSSCEEEEEECSSSSCEEEEEETTS-----CEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS-CEE
T ss_pred             cccccccccccccccccceeeeccccccc-----ccccccccccccccccccccccccccccCccccccccccccc-ccc
Confidence            22111111122223  344 566655442     477888876554332211111111111122667777777665 899


Q ss_pred             EEeCCCCceEEccCCC-CCcCCCC---ceEEE-eCCEEEEEcCCce-EEEEEcCCccc
Q 045821          274 MWQKESREWSPVGRLS-TLLTRPP---CKLVA-IGKTIFVIGKGCS-AVVIDVGNIGN  325 (352)
Q Consensus       274 ~yd~~~~~W~~~~~~~-~~~~~~~---~~~~~-~~~~i~v~gG~~~-~~~~d~~~~~w  325 (352)
                      +||..+++-...-... .....+.   .++.. .+++.++.|+.++ +.+||.++..-
T Consensus       215 ~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~  272 (311)
T d1nr0a1         215 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV  272 (311)
T ss_dssp             EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             ccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            9998876543221111 1101111   12222 2556666676654 66899876543

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.026  Score=43.28  Aligned_cols=146  Identities=7%  Similarity=-0.022  Sum_probs=82.5

Q ss_pred             EEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEe--c----CCCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEE
Q 045821          114 GFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTD--A----APMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVY  185 (352)
Q Consensus       114 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~--~----~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~y  185 (352)
                      +++.++|.+|+|-|        ..+|.++.....+..  +    +.+|.. . -++...  ++++|++-|    ..+++|
T Consensus        13 Av~~~~g~~y~Fkg--------~~~wr~~~~~~~~~p~~i~~~w~~lp~~-I-DAAf~~~~~~~~yffkg----~~~w~y   78 (192)
T d1pexa_          13 AITSLRGETMIFKD--------RFFWRLHPQQVDAELFLTKSFWPELPNR-I-DAAYEHPSHDLIFIFRG----RKFWAL   78 (192)
T ss_dssp             EEEEETTEEEEEET--------TEEEEECSSSSCCEEEEHHHHCTTSCSS-C-CEEEEETTTTEEEEEET----TEEEEE
T ss_pred             EEEEcCCeEEEEEC--------CEEEEEcCCCCCCcccchhhhCcCCCCc-c-cceEEEcCCCEEEEEcC----CEEEEE
Confidence            46678999999977        345555543332221  1    122321 1 122222  688999998    778999


Q ss_pred             eCCCCcE---EEecCC--CCcccce-eEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCceee-----cCC-CCC-CCC
Q 045821          186 DPRTNNW---KLHTEP--NIFTEIE-DSFVM--DGKIYIRCSASAATSHVCALVYEPSTDSWLH-----ADA-NMA-SGW  250 (352)
Q Consensus       186 d~~t~~W---~~~~~~--~~~~~~~-~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~-----~~~-~~~-~~~  250 (352)
                      +..+-..   +.+...  +.....- +++..  ++++|++-|..       .++||..++.=..     +.. -+. +..
T Consensus        79 ~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg~~-------y~~y~~~~~~~~~~~pk~I~~~w~gvp~~  151 (192)
T d1pexa_          79 NGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGNQ-------VWRYDDTNHIMDKDYPRLIEEDFPGIGDK  151 (192)
T ss_dssp             STTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETTE-------EEEEETTTTEECSSCCCBHHHHSTTSCSC
T ss_pred             cCCcccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeCCE-------EEEEcCccccccCCCcEEHhhcCCCCCCC
Confidence            8665433   233331  1111112 23332  68999996543       7899876654211     110 000 111


Q ss_pred             CCcEEEECCEEEEEecCCCCeEEEEeCCCCceE
Q 045821          251 RGPAVVVDDALYVLDQSSGTKLMMWQKESREWS  283 (352)
Q Consensus       251 ~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~  283 (352)
                      ..++...+|++|++-|.   ..++||..+++-.
T Consensus       152 vdAa~~~~g~~YfF~g~---~y~r~~~~~~~v~  181 (192)
T d1pexa_         152 VDAVYEKNGYIYFFNGP---IQFEYSIWSNRIV  181 (192)
T ss_dssp             CSEEEEETTEEEEEETT---EEEEEETTTTEEE
T ss_pred             ceEEEEeCCEEEEEECC---EEEEEeCCcCeEc
Confidence            22345679999999876   8999998886654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.13  E-value=0.031  Score=47.27  Aligned_cols=236  Identities=12%  Similarity=0.139  Sum_probs=109.0

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-CCEEEEEeCCCCCCCCCCeEEEEECCCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-GKNAYLLGGCGWSEDATSEVYCYDASMN  146 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~  146 (352)
                      ++.++++|+.+  +  .+.+||.  .++++..+..+..  ....-.++... ++..++.||.+      ..+.+||..++
T Consensus        18 dg~~la~~~~~--~--~i~iw~~--~~~~~~~~~~l~g--H~~~V~~l~fsp~~~~l~s~s~D------~~i~vWd~~~~   83 (371)
T d1k8kc_          18 DRTQIAICPNN--H--EVHIYEK--SGNKWVQVHELKE--HNGQVTGVDWAPDSNRIVTCGTD------RNAYVWTLKGR   83 (371)
T ss_dssp             TSSEEEEECSS--S--EEEEEEE--ETTEEEEEEEEEC--CSSCEEEEEEETTTTEEEEEETT------SCEEEEEEETT
T ss_pred             CCCEEEEEeCC--C--EEEEEEC--CCCCEEEEEEecC--CCCCEEEEEECCCCCEEEEEECC------CeEEEEeeccc
Confidence            45566666541  2  3445677  7777766655431  01111222222 45555556532      45888999999


Q ss_pred             eeEecCCCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE--CCEEEEEccCCC
Q 045821          147 TWTDAAPMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM--DGKIYIRCSASA  222 (352)
Q Consensus       147 ~W~~~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~iyv~GG~~~  222 (352)
                      +|...............+.+  +++.++.|+.+..-.++.++...+.+..............++.+  ++++++.|+.++
T Consensus        84 ~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~  163 (371)
T d1k8kc_          84 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF  163 (371)
T ss_dssp             EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCc
Confidence            88765443322222222223  45555666544223344455555545433222211111122222  667777765543


Q ss_pred             CCCceEEEEEeCCCCceeecCCCC-------------CCCCCCc---EEE--ECCEEEEEecCCCCeEEEEeCCCCceEE
Q 045821          223 ATSHVCALVYEPSTDSWLHADANM-------------ASGWRGP---AVV--VDDALYVLDQSSGTKLMMWQKESREWSP  284 (352)
Q Consensus       223 ~~~~~~i~~yd~~~~~W~~~~~~~-------------~~~~~~~---~~~--~~~~l~~~gg~~~~~v~~yd~~~~~W~~  284 (352)
                           .+..||.............             ....+..   .+.  .+++.++.++.++ .+..||..+..=  
T Consensus       164 -----~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~-~i~iwd~~~~~~--  235 (371)
T d1k8kc_         164 -----KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS-TVCLADADKKMA--  235 (371)
T ss_dssp             -----CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT-EEEEEEGGGTTE--
T ss_pred             -----EEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCC-cceEEeeecccc--
Confidence                 3566666544332211100             0001111   122  2556666676655 899999876542  


Q ss_pred             ccCCCCCcCCCCceEEEeCCEEEEEcCCce--EEEEEcCCccc
Q 045821          285 VGRLSTLLTRPPCKLVAIGKTIFVIGKGCS--AVVIDVGNIGN  325 (352)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~--~~~~d~~~~~w  325 (352)
                      +..+......-.......++++++.|....  .+.+|.....|
T Consensus       236 ~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~  278 (371)
T d1k8kc_         236 VATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKL  278 (371)
T ss_dssp             EEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEE
T ss_pred             eeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeCCCceE
Confidence            221111000001122235777777664333  33355444333

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=3.1e-05  Score=55.49  Aligned_cols=41  Identities=22%  Similarity=0.315  Sum_probs=36.2

Q ss_pred             ccCCCc----HHHHHHhhccCccccchhhhhhhhhhcccccChhh
Q 045821           17 LISGLP----DDIALFCLARVPRRYHAVLKCVSSRWRGLLHSEEW   57 (352)
Q Consensus        17 ~~~~lp----~dl~~~il~r~p~~~~~~l~~v~k~W~~l~~s~~~   57 (352)
                      .++.||    +|++..||+.|+..++.++..|||+|+.++.++.+
T Consensus        10 ~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~l   54 (118)
T d1p22a1          10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGML   54 (118)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTH
T ss_pred             HHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHH
Confidence            556677    59999999999999999999999999999877654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=96.92  E-value=0.024  Score=45.78  Aligned_cols=228  Identities=16%  Similarity=0.112  Sum_probs=106.2

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-C-CEEEEEeCCCCCCCCCCeEEEEECCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-G-KNAYLLGGCGWSEDATSEVYCYDASM  145 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~d~~t  145 (352)
                      +.+||+.++.    .-.+.+||.  .++.-...-+..     ..-+.++.. + +.+++.+.      ....+..+|..+
T Consensus        43 G~~l~v~~~~----~~~i~v~d~--~t~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  105 (301)
T d1l0qa2          43 GTKVYVANAH----SNDVSIIDT--ATNNVIATVPAG-----SSPQGVAVSPDGKQVYVTNM------ASSTLSVIDTTS  105 (301)
T ss_dssp             SSEEEEEEGG----GTEEEEEET--TTTEEEEEEECS-----SSEEEEEECTTSSEEEEEET------TTTEEEEEETTT
T ss_pred             CCEEEEEECC----CCEEEEEEC--CCCceeeeeecc-----cccccccccccccccccccc------ccceeeeccccc
Confidence            5678876543    224666788  666533222221     111233333 3 34555442      235677888888


Q ss_pred             CeeEecCCCCCcceeeeeEEE-CC-EEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEE-CCEEEEEccCCC
Q 045821          146 NTWTDAAPMSTARCYFPCGVL-NQ-KIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM-DGKIYIRCSASA  222 (352)
Q Consensus       146 ~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~iyv~GG~~~  222 (352)
                      ++....-....  .....+.. ++ .+++.+..+  ..+..++..+.............. ..+... ++.+|+.+... 
T Consensus       106 ~~~~~~~~~~~--~~~~~~~~~dg~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-  179 (301)
T d1l0qa2         106 NTVAGTVKTGK--SPLGLALSPDGKKLYVTNNGD--KTVSVINTVTKAVINTVSVGRSPK-GIAVTPDGTKVYVANFDS-  179 (301)
T ss_dssp             TEEEEEEECSS--SEEEEEECTTSSEEEEEETTT--TEEEEEETTTTEEEEEEECCSSEE-EEEECTTSSEEEEEETTT-
T ss_pred             ceeeeeccccc--cceEEEeecCCCeeeeeeccc--cceeeeeccccceeeecccCCCce-EEEeeccccceeeecccc-
Confidence            76433222111  11222222 34 455554433  567788888776544322222111 111222 34566653221 


Q ss_pred             CCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEE-CCEEEEEecCC-CCeEEEEeCCCCceEEccCCCCCcCCCCceEE
Q 045821          223 ATSHVCALVYEPSTDSWLHADANMASGWRGPAVVV-DDALYVLDQSS-GTKLMMWQKESREWSPVGRLSTLLTRPPCKLV  300 (352)
Q Consensus       223 ~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~l~~~gg~~-~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~  300 (352)
                          ..+..++................ ...++.. ++.+|+.+... ...+.+||..+.+-...  ++..  ....+++
T Consensus       180 ----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~--~~~~--~~~~~va  250 (301)
T d1l0qa2         180 ----MSISVIDTVTNSVIDTVKVEAAP-SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITAR--IPVG--PDPAGIA  250 (301)
T ss_dssp             ----TEEEEEETTTTEEEEEEECSSEE-EEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEE--EECC--SSEEEEE
T ss_pred             ----cccccccccceeeeecccccCCc-ceeeccccccccccccccceeeeeeeeecCCCeEEEE--EcCC--CCEEEEE
Confidence                23555566555544332111100 1112222 44566554322 24799999988764322  2111  1112232


Q ss_pred             E--eCCEEEEEcCC-ceEEEEEcCCccccc
Q 045821          301 A--IGKTIFVIGKG-CSAVVIDVGNIGNIG  327 (352)
Q Consensus       301 ~--~~~~i~v~gG~-~~~~~~d~~~~~w~~  327 (352)
                      .  -+..||+-++. ..+.++|+++..-.+
T Consensus       251 ~spdg~~l~va~~~~~~i~v~D~~t~~~~~  280 (301)
T d1l0qa2         251 VTPDGKKVYVALSFCNTVSVIDTATNTITA  280 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EeCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence            2  34568887654 467789998875443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.91  E-value=0.069  Score=42.74  Aligned_cols=224  Identities=9%  Similarity=0.014  Sum_probs=106.5

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEE-ECCEEEEEeCCCCCCCCCCeEEEEECCCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEV-LGKNAYLLGGCGWSEDATSEVYCYDASMN  146 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~t~  146 (352)
                      ++.+|+....   .......+++  ....-... ....   ......++. .++.||+....      ...+.+++..+.
T Consensus        24 dG~i~v~~~~---~~~~i~~~~~--~~~~~~~~-~~~~---~~~p~gvav~~~g~i~v~d~~------~~~i~~~~~~~~   88 (260)
T d1rwia_          24 AGNVYVTSEG---MYGRVVKLAT--GSTGTTVL-PFNG---LYQPQGLAVDGAGTVYVTDFN------NRVVTLAAGSNN   88 (260)
T ss_dssp             TCCEEEEECS---SSCEEEEEC------CEEEC-CCCS---CCSCCCEEECTTCCEEEEETT------TEEEEECTTCSC
T ss_pred             CCCEEEEEcC---CCCEEEEEcC--CCceEEEe-ccCC---ccCceEEEEcCCCCEEEeeee------eceeeeeeeccc
Confidence            6778987543   2224455555  33321111 1211   111122333 36778887532      123333433333


Q ss_pred             eeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEE-EECCEEEEEccCCCCC
Q 045821          147 TWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSF-VMDGKIYIRCSASAAT  224 (352)
Q Consensus       147 ~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~-~~~g~iyv~GG~~~~~  224 (352)
                      .+..  ..........+++- +++||+.....  ..+..++.....-...... ....-...+ .-+|++|+.....   
T Consensus        89 ~~~~--~~~~~~~p~~iavd~~g~i~v~d~~~--~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~~~~g~~~v~~~~~---  160 (260)
T d1rwia_          89 QTVL--PFDGLNYPEGLAVDTQGAVYVADRGN--NRVVKLAAGSKTQTVLPFT-GLNDPDGVAVDNSGNVYVTDTDN---  160 (260)
T ss_dssp             CEEC--CCCSCCSEEEEEECTTCCEEEEEGGG--TEEEEECTTCSSCEECCCC-SCCSCCEEEECTTCCEEEEEGGG---
T ss_pred             eeee--eeeeeeecccccccccceeEeecccc--ccccccccccceeeeeeec-ccCCcceeeecCCCCEeeecccc---
Confidence            3321  11111122233332 56888875322  5677787776543332211 111111222 2367888874222   


Q ss_pred             CceEEEEEeCCCCceeecCCCCCCCCCCcEEE--ECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEe
Q 045821          225 SHVCALVYEPSTDSWLHADANMASGWRGPAVV--VDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAI  302 (352)
Q Consensus       225 ~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~--~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~  302 (352)
                        ..+.+||...+.........  ......+.  -+|.||+..-..+ .+.+|++.......+.....   ....+++.-
T Consensus       161 --~~i~~~d~~~~~~~~~~~~~--~~~p~gi~~d~~g~l~vsd~~~~-~i~~~~~~~~~~~~~~~~~~---~~P~~i~~d  232 (260)
T d1rwia_         161 --NRVVKLEAESNNQVVLPFTD--ITAPWGIAVDEAGTVYVTEHNTN-QVVKLLAGSTTSTVLPFTGL---NTPLAVAVD  232 (260)
T ss_dssp             --TEEEEECTTTCCEEECCCSS--CCSEEEEEECTTCCEEEEETTTT-EEEEECTTCSCCEECCCCSC---CCEEEEEEC
T ss_pred             --ccccccccccceeeeeeccc--cCCCccceeeeeeeeeeeecCCC-EEEEEeCCCCeEEEEccCCC---CCeEEEEEe
Confidence              26889998766554443211  11112333  3578888765443 89999998877666543221   122344443


Q ss_pred             -CCEEEEEc-CCceEEEEEcCC
Q 045821          303 -GKTIFVIG-KGCSAVVIDVGN  322 (352)
Q Consensus       303 -~~~i~v~g-G~~~~~~~d~~~  322 (352)
                       ++.||+.- +..++..++.-.
T Consensus       233 ~~g~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         233 SDRTVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             TTCCEEEEEGGGTEEEEECCCG
T ss_pred             CCCCEEEEECCCCEEEEEeCCC
Confidence             46788873 344555555443

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.092  Score=43.45  Aligned_cols=187  Identities=10%  Similarity=-0.024  Sum_probs=90.9

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEEeCCCCcEEEec
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVYDPRTNNWKLHT  196 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~  196 (352)
                      ++..++.|+.+      ..+.+||....+......+...........+  ++.+++.++.+  ..+..||..+.+-....
T Consensus       108 dg~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--~~i~~~~~~~~~~~~~~  179 (337)
T d1gxra_         108 DGCTLIVGGEA------STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD--GNIAVWDLHNQTLVRQF  179 (337)
T ss_dssp             TSSEEEEEESS------SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT--SCEEEEETTTTEEEEEE
T ss_pred             CCCEEEEeecc------cccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccc
Confidence            55556666542      4678889876665443332211111111122  45555655544  67889998887643332


Q ss_pred             CCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEe
Q 045821          197 EPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQ  276 (352)
Q Consensus       197 ~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd  276 (352)
                      ..........+...++..++.|+.++     .+..||..+.+-...-. ........+...+++.++.|+.++ .+.+||
T Consensus       180 ~~~~~~v~~l~~s~~~~~~~~~~~d~-----~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~-~i~i~d  252 (337)
T d1gxra_         180 QGHTDGASCIDISNDGTKLWTGGLDN-----TVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESS-NVEVLH  252 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTS-CEEEEE
T ss_pred             cccccccccccccccccccccccccc-----cccccccccceeecccc-cccceEEEEEcccccccceecccc-cccccc
Confidence            21111111112223566666655442     57788887654221111 000000111122566666776655 899999


Q ss_pred             CCCCceEEccCCCCCcCCCCceEE-EeCCEEEEEcCCce-EEEEEcCCcc
Q 045821          277 KESREWSPVGRLSTLLTRPPCKLV-AIGKTIFVIGKGCS-AVVIDVGNIG  324 (352)
Q Consensus       277 ~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~i~v~gG~~~-~~~~d~~~~~  324 (352)
                      ..+..-.....-..    ...++. ..+++.++.|+.+. +.+||.+...
T Consensus       253 ~~~~~~~~~~~~~~----~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~  298 (337)
T d1gxra_         253 VNKPDKYQLHLHES----CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             TTSSCEEEECCCSS----CEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             cccccccccccccc----ccceEEECCCCCEEEEEeCCCeEEEEECCCCC
Confidence            98766443321111    111222 23555555565554 5578877543

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.063  Score=41.11  Aligned_cols=147  Identities=6%  Similarity=-0.005  Sum_probs=81.9

Q ss_pred             EEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeE--ec----CCCCCcceeeeeEEE--CCEEEEEeCCCCCCceEEE
Q 045821          114 GFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWT--DA----APMSTARCYFPCGVL--NQKIYCIGGLGDTHSWDVY  185 (352)
Q Consensus       114 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~--~~----~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~v~~y  185 (352)
                      +++.++|.+|+|-|.        .+|..+.......  .+    +.+|..  --++...  ++++|++-|    ..+++|
T Consensus        16 Av~~~~G~~y~Fkg~--------~~wr~~~~~~~~~p~~i~~~w~glp~~--IDAAf~~~~~~~~yfFkG----~~y~~y   81 (195)
T d1su3a2          16 AITTIRGEVMFFKDR--------FYMRTNPFYPEVELNFISVFWPQLPNG--LEAAYEFADRDEVRFFKG----NKYWAV   81 (195)
T ss_dssp             EEEEETTEEEEEETT--------EEEECCTTSSSCEEEEGGGTCTTSCSS--CCEEEEEGGGTEEEEEET----TEEEEE
T ss_pred             EEEEcCCeEEEEeCC--------EEEEeeCCCCccCccchHhhCcCCCCc--ccceEEecCCcEEEEECC----cEEEEE
Confidence            566789999999872        3444443333221  11    122221  1123223  589999999    788999


Q ss_pred             eCCCCc---EEEec---CCCCcccce-eEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCceee-----cCC---CCCC
Q 045821          186 DPRTNN---WKLHT---EPNIFTEIE-DSFVM--DGKIYIRCSASAATSHVCALVYEPSTDSWLH-----ADA---NMAS  248 (352)
Q Consensus       186 d~~t~~---W~~~~---~~~~~~~~~-~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~-----~~~---~~~~  248 (352)
                      +..+..   -+.+.   .+|...... ++...  ++++|++-|..       .++||..+++-..     +..   ..+.
T Consensus        82 ~~~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG~~-------y~ry~~~~~~vd~gyPk~I~~~w~Gvp~  154 (195)
T d1su3a2          82 QGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVANK-------YWRYDEYKRSMDPGYPKMIAHDFPGIGH  154 (195)
T ss_dssp             ETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETTE-------EEEEETTTTEECSSCSEEHHHHSTTSCS
T ss_pred             cCCccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeCCE-------EEEEeccCccccCCcccccccccCCCCC
Confidence            854322   12221   122222212 33333  57999996643       8999987754211     100   0111


Q ss_pred             CCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceEEc
Q 045821          249 GWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPV  285 (352)
Q Consensus       249 ~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~  285 (352)
                       ..-++...+|++|++-|.   ..++||..+++-..+
T Consensus       155 -~iDAAf~~~g~~YfFkg~---~y~r~~~~~~~v~~~  187 (195)
T d1su3a2         155 -KVDAVFMKDGFFYFFHGT---RQYKFDPKTKRILTL  187 (195)
T ss_dssp             -CCSEEEEETTEEEEEETT---EEEEEETTTTEEEEE
T ss_pred             -CccEEEEECCeEEEEECC---EEEEEeCCcCEEEec
Confidence             122345679999999886   899999987765443

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.084  Score=43.70  Aligned_cols=181  Identities=12%  Similarity=0.020  Sum_probs=86.1

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecCC
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEP  198 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~  198 (352)
                      ++.+++.++.      ...+..+|..+++-..................++..++.|+.+  ..+.+||..+.+-...-..
T Consensus       152 ~~~~l~s~~~------d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d--~~v~i~d~~~~~~~~~~~~  223 (337)
T d1gxra_         152 DSKVCFSCCS------DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD--NTVRSWDLREGRQLQQHDF  223 (337)
T ss_dssp             TSSEEEEEET------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT--SEEEEEETTTTEEEEEEEC
T ss_pred             cccccccccc------ccccccccccccccccccccccccccccccccccccccccccc--ccccccccccceeeccccc
Confidence            4445555543      2457888888776333222111111111111245566666654  6788999887642221111


Q ss_pred             CCcccceeEEE-ECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeC
Q 045821          199 NIFTEIEDSFV-MDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQK  277 (352)
Q Consensus       199 ~~~~~~~~~~~-~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~  277 (352)
                      .  ..-.+++. -+++..+.|+..+     .+..||..+..-..... ............+++.++.|+.++ .+.+||.
T Consensus       224 ~--~~i~~l~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~-~~~~i~~v~~s~~g~~l~s~s~Dg-~i~iwd~  294 (337)
T d1gxra_         224 T--SQIFSLGYCPTGEWLAVGMESS-----NVEVLHVNKPDKYQLHL-HESCVLSLKFAYCGKWFVSTGKDN-LLNAWRT  294 (337)
T ss_dssp             S--SCEEEEEECTTSSEEEEEETTS-----CEEEEETTSSCEEEECC-CSSCEEEEEECTTSSEEEEEETTS-EEEEEET
T ss_pred             c--cceEEEEEcccccccceecccc-----ccccccccccccccccc-cccccceEEECCCCCEEEEEeCCC-eEEEEEC
Confidence            1  11111222 2556666655442     47778876655433211 010101111223667777777665 8999998


Q ss_pred             CCCceEEccCCCCCcCCCCceEE-EeCCEEEEEcCCce-EEEEEc
Q 045821          278 ESREWSPVGRLSTLLTRPPCKLV-AIGKTIFVIGKGCS-AVVIDV  320 (352)
Q Consensus       278 ~~~~W~~~~~~~~~~~~~~~~~~-~~~~~i~v~gG~~~-~~~~d~  320 (352)
                      .+++-...  ...  ...-.++. ..+++.++.|+.++ +.+||+
T Consensus       295 ~~~~~~~~--~~~--~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         295 PYGASIFQ--SKE--SSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TTCCEEEE--EEC--SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCCCEEEE--ccC--CCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            77543222  111  01111222 23566666666543 556764

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.62  E-value=0.05  Score=45.92  Aligned_cols=152  Identities=13%  Similarity=0.112  Sum_probs=84.4

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcc-eeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEec
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTAR-CYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHT  196 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r-~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~  196 (352)
                      ++..+++|+.      ...+.+||..++++..+..+..-. .-.+++.. +++..+.||.+  ..+.+||..++.|+...
T Consensus        18 dg~~la~~~~------~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D--~~i~vWd~~~~~~~~~~   89 (371)
T d1k8kc_          18 DRTQIAICPN------NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD--RNAYVWTLKGRTWKPTL   89 (371)
T ss_dssp             TSSEEEEECS------SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT--SCEEEEEEETTEEEEEE
T ss_pred             CCCEEEEEeC------CCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECC--CeEEEEeeccccccccc
Confidence            4556666653      246888999888887765443111 11122222 55655666654  67899999999998665


Q ss_pred             CCCCcccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEE--ECCEEEEEecCCCCeE
Q 045821          197 EPNIFTEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVV--VDDALYVLDQSSGTKL  272 (352)
Q Consensus       197 ~~~~~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~--~~~~l~~~gg~~~~~v  272 (352)
                      ...........+.+  +++.++.|+.+   ....++.++..++.+............-..+.  -+++.++.|+.++ .+
T Consensus        90 ~~~~~~~~v~~i~~~p~~~~l~~~s~d---~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~-~v  165 (371)
T d1k8kc_          90 VILRINRAARCVRWAPNEKKFAVGSGS---RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF-KC  165 (371)
T ss_dssp             ECCCCSSCEEEEEECTTSSEEEEEETT---SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS-CE
T ss_pred             ccccccccccccccccccccceeeccc---CcceeeeeecccccccccccccccccccccccccccccceeccccCc-EE
Confidence            33332222222222  66666665443   23456677776666654322111111111122  2667777777766 78


Q ss_pred             EEEeCCCCce
Q 045821          273 MMWQKESREW  282 (352)
Q Consensus       273 ~~yd~~~~~W  282 (352)
                      .+||......
T Consensus       166 ~v~~~~~~~~  175 (371)
T d1k8kc_         166 RIFSAYIKEV  175 (371)
T ss_dssp             EEEECCCTTT
T ss_pred             EEEeeccCcc
Confidence            8898876543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=96.54  E-value=0.056  Score=43.44  Aligned_cols=225  Identities=15%  Similarity=0.169  Sum_probs=106.7

Q ss_pred             CEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-C-CEEEEEeCCCCCCCCCCeEEEEECCCC
Q 045821           69 TWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-G-KNAYLLGGCGWSEDATSEVYCYDASMN  146 (352)
Q Consensus        69 ~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~d~~t~  146 (352)
                      .++|+.+..  .+  .+.++|+  .+++....-+...     .-+.++.. + .++|+.+..      ...+.+||..++
T Consensus         2 ~~~yV~~~~--~~--~v~v~D~--~t~~~~~~i~~g~-----~p~~va~spdG~~l~v~~~~------~~~i~v~d~~t~   64 (301)
T d1l0qa2           2 TFAYIANSE--SD--NISVIDV--TSNKVTATIPVGS-----NPMGAVISPDGTKVYVANAH------SNDVSIIDTATN   64 (301)
T ss_dssp             EEEEEEETT--TT--EEEEEET--TTTEEEEEEECSS-----SEEEEEECTTSSEEEEEEGG------GTEEEEEETTTT
T ss_pred             eEEEEEECC--CC--EEEEEEC--CCCeEEEEEECCC-----CceEEEEeCCCCEEEEEECC------CCEEEEEECCCC
Confidence            367887543  22  3556698  8886554333331     11333333 3 468877642      357899999988


Q ss_pred             eeEecCCCCCcceeeeeEEE-CC-EEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCE-EEEEccCCCC
Q 045821          147 TWTDAAPMSTARCYFPCGVL-NQ-KIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGK-IYIRCSASAA  223 (352)
Q Consensus       147 ~W~~~~~~~~~r~~~~~~~~-~~-~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~-iyv~GG~~~~  223 (352)
                      +-...  ++.....+.++.. ++ .+++.+..+  ..+.++|..+++....-..... .......-++. +++.+...  
T Consensus        65 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~~--  137 (301)
T d1l0qa2          65 NVIAT--VPAGSSPQGVAVSPDGKQVYVTNMAS--STLSVIDTTSNTVAGTVKTGKS-PLGLALSPDGKKLYVTNNGD--  137 (301)
T ss_dssp             EEEEE--EECSSSEEEEEECTTSSEEEEEETTT--TEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTT--
T ss_pred             ceeee--eecccccccccccccccccccccccc--ceeeecccccceeeeecccccc-ceEEEeecCCCeeeeeeccc--
Confidence            64321  1211122233333 33 455544433  6677888888764433211111 11122222444 44443222  


Q ss_pred             CCceEEEEEeCCCCceeecCCCCCCCCCCcEEEE-CCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEe
Q 045821          224 TSHVCALVYEPSTDSWLHADANMASGWRGPAVVV-DDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAI  302 (352)
Q Consensus       224 ~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~  302 (352)
                         ..+..++..+......-...... ....... ++.+|+.+. ....+..++............+..  ....++...
T Consensus       138 ---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  210 (301)
T d1l0qa2         138 ---KTVSVINTVTKAVINTVSVGRSP-KGIAVTPDGTKVYVANF-DSMSISVIDTVTNSVIDTVKVEAA--PSGIAVNPE  210 (301)
T ss_dssp             ---TEEEEEETTTTEEEEEEECCSSE-EEEEECTTSSEEEEEET-TTTEEEEEETTTTEEEEEEECSSE--EEEEEECTT
T ss_pred             ---cceeeeeccccceeeecccCCCc-eEEEeeccccceeeecc-cccccccccccceeeeecccccCC--cceeecccc
Confidence               24666777766544332111110 1111222 344555443 333777777777666554333221  111222233


Q ss_pred             CCEEEEEc--CC-ceEEEEEcCCcc
Q 045821          303 GKTIFVIG--KG-CSAVVIDVGNIG  324 (352)
Q Consensus       303 ~~~i~v~g--G~-~~~~~~d~~~~~  324 (352)
                      ++.+|+.+  +. ..+.++|+.+..
T Consensus       211 g~~~~v~~~~~~~~~v~v~D~~t~~  235 (301)
T d1l0qa2         211 GTKAYVTNVDKYFNTVSMIDTGTNK  235 (301)
T ss_dssp             SSEEEEEEECSSCCEEEEEETTTTE
T ss_pred             ccccccccccceeeeeeeeecCCCe
Confidence            55666553  22 246678877654

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.11  Score=39.49  Aligned_cols=147  Identities=6%  Similarity=-0.030  Sum_probs=81.4

Q ss_pred             eeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEec--C-CCC-cccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCC
Q 045821          162 PCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHT--E-PNI-FTEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPS  235 (352)
Q Consensus       162 ~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~--~-~~~-~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~  235 (352)
                      +++.++|.+|++-|    ..++.++.....+....  . .+. +..-.++...  ++++|++-|..       +++|+..
T Consensus        13 Av~~~~g~~y~Fkg----~~~wr~~~~~~~~~p~~i~~~w~~lp~~IDAAf~~~~~~~~yffkg~~-------~w~y~~~   81 (192)
T d1pexa_          13 AITSLRGETMIFKD----RFFWRLHPQQVDAELFLTKSFWPELPNRIDAAYEHPSHDLIFIFRGRK-------FWALNGY   81 (192)
T ss_dssp             EEEEETTEEEEEET----TEEEEECSSSSCCEEEEHHHHCTTSCSSCCEEEEETTTTEEEEEETTE-------EEEESTT
T ss_pred             EEEEcCCeEEEEEC----CEEEEEcCCCCCCcccchhhhCcCCCCcccceEEEcCCCEEEEEcCCE-------EEEEcCC
Confidence            56677999999998    66777766554443221  1 111 1112234443  67889885544       7888765


Q ss_pred             CCce---eecCCC-CCCC-CCCcE-EE--ECCEEEEEecCCCCeEEEEeCCCCceE-----EccC-CCCCcCCCCceEEE
Q 045821          236 TDSW---LHADAN-MASG-WRGPA-VV--VDDALYVLDQSSGTKLMMWQKESREWS-----PVGR-LSTLLTRPPCKLVA  301 (352)
Q Consensus       236 ~~~W---~~~~~~-~~~~-~~~~~-~~--~~~~l~~~gg~~~~~v~~yd~~~~~W~-----~~~~-~~~~~~~~~~~~~~  301 (352)
                      +...   ..+... .+.. ..--+ +.  .++++|++-|.   ..++||..++.-.     .+.. .+. .+..--++..
T Consensus        82 ~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg~---~y~~y~~~~~~~~~~~pk~I~~~w~g-vp~~vdAa~~  157 (192)
T d1pexa_          82 DILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGN---QVWRYDDTNHIMDKDYPRLIEEDFPG-IGDKVDAVYE  157 (192)
T ss_dssp             CCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETT---EEEEEETTTTEECSSCCCBHHHHSTT-SCSCCSEEEE
T ss_pred             cccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeCC---EEEEEcCccccccCCCcEEHhhcCCC-CCCCceEEEE
Confidence            4333   122210 1111 11123 33  26899999876   7899998776422     1111 111 1112224446


Q ss_pred             eCCEEEEEcCCceEEEEEcCCcc
Q 045821          302 IGKTIFVIGKGCSAVVIDVGNIG  324 (352)
Q Consensus       302 ~~~~i~v~gG~~~~~~~d~~~~~  324 (352)
                      .++++|+|-|. ..+-||..+.+
T Consensus       158 ~~g~~YfF~g~-~y~r~~~~~~~  179 (192)
T d1pexa_         158 KNGYIYFFNGP-IQFEYSIWSNR  179 (192)
T ss_dssp             ETTEEEEEETT-EEEEEETTTTE
T ss_pred             eCCEEEEEECC-EEEEEeCCcCe
Confidence            79999999876 45568876644

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.47  E-value=0.15  Score=41.62  Aligned_cols=193  Identities=7%  Similarity=-0.060  Sum_probs=97.4

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCe
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNT  147 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~  147 (352)
                      ++.||.+    ......++.+|+  .++.-... .++.    .....+..-++.+++...        +.+..||+.+++
T Consensus        29 ~~~l~wv----Di~~~~I~r~d~--~~g~~~~~-~~~~----~~~~i~~~~dg~l~va~~--------~gl~~~d~~tg~   89 (295)
T d2ghsa1          29 SGTAWWF----NILERELHELHL--ASGRKTVH-ALPF----MGSALAKISDSKQLIASD--------DGLFLRDTATGV   89 (295)
T ss_dssp             TTEEEEE----EGGGTEEEEEET--TTTEEEEE-ECSS----CEEEEEEEETTEEEEEET--------TEEEEEETTTCC
T ss_pred             CCEEEEE----ECCCCEEEEEEC--CCCeEEEE-ECCC----CcEEEEEecCCCEEEEEe--------CccEEeecccce
Confidence            5667766    223346788899  77765443 2331    112222334667776532        458999999999


Q ss_pred             eEecCCCCC--cceeeeeEEE--CCEEEEEeCCCCC--CceEEEeCCCCcEEEecCCCCcccceeEEEE-CCEEEEEccC
Q 045821          148 WTDAAPMST--ARCYFPCGVL--NQKIYCIGGLGDT--HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM-DGKIYIRCSA  220 (352)
Q Consensus       148 W~~~~~~~~--~r~~~~~~~~--~~~iyv~gG~~~~--~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~iyv~GG~  220 (352)
                      .+.+.....  +.....-..+  +|++|+.......  ..-..|....++.+.+... .......+..- ++.+|+... 
T Consensus        90 ~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt-  167 (295)
T d2ghsa1          90 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDT-  167 (295)
T ss_dssp             EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEET-
T ss_pred             eeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeec-
Confidence            887765432  2222222233  6777775432221  3334555555655554321 11111112222 345777742 


Q ss_pred             CCCCCceEEEEEeCCCC--ceee----cCCCCCCCCC--CcEEEECCEEEEEecCCCCeEEEEeCCCCceEEcc
Q 045821          221 SAATSHVCALVYEPSTD--SWLH----ADANMASGWR--GPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVG  286 (352)
Q Consensus       221 ~~~~~~~~i~~yd~~~~--~W~~----~~~~~~~~~~--~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~  286 (352)
                          ....+++|+...+  ....    ..........  +.++-.+|.||+.. ..+..|.+||++.+....+.
T Consensus       168 ----~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~-~~~g~V~~~dp~G~~~~~i~  236 (295)
T d2ghsa1         168 ----KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNAR-WGEGAVDRYDTDGNHIARYE  236 (295)
T ss_dssp             ----TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEE-ETTTEEEEECTTCCEEEEEE
T ss_pred             ----ccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeee-eCCCceEEecCCCcEeeEec
Confidence                2236888765322  2211    0000111111  11222467777653 22238999999988877775

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.11  Score=39.68  Aligned_cols=143  Identities=9%  Similarity=0.044  Sum_probs=79.3

Q ss_pred             EEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeE----ec----CCCCCcceeeeeEE---ECCEEEEEeCCCCCCce
Q 045821          114 GFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWT----DA----APMSTARCYFPCGV---LNQKIYCIGGLGDTHSW  182 (352)
Q Consensus       114 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~----~~----~~~~~~r~~~~~~~---~~~~iyv~gG~~~~~~v  182 (352)
                      +++.++|.+|+|-|        ..+|+++.......    .+    +.+|.   .-.++.   .++++|++-|    +.+
T Consensus        11 Av~~~~G~~y~Fkg--------~~ywr~~~~~~~~~~~P~~I~~~w~glp~---~IDAAf~~~~~~k~yfFkg----~~~   75 (195)
T d1itva_          11 AIAEIGNQLYLFKD--------GKYWRFSEGRGSRPQGPFLIADKWPALPR---KLDSVFEEPLSKKLFFFSG----RQV   75 (195)
T ss_dssp             EEEEETTEEEEEET--------TEEEEECCSSSCCCEEEEEHHHHCTTSCS---SCSEEEECTTTCCEEEEET----TEE
T ss_pred             eEEEeCCEEEEEEC--------CEEEEEeCCCCCcCCCcEEeeeecCCCCC---CccEEEEECCCCEEEEEec----CEE
Confidence            36678999999977        45566654322211    11    12222   122222   2578999988    778


Q ss_pred             EEEeCCCCcE-EEecC--CCCcccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCceeecCC------CCCC-CC
Q 045821          183 DVYDPRTNNW-KLHTE--PNIFTEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPSTDSWLHADA------NMAS-GW  250 (352)
Q Consensus       183 ~~yd~~t~~W-~~~~~--~~~~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~------~~~~-~~  250 (352)
                      ++|+-.+-.. +.+..  +|.....-.++..  +|++|++=|.       ..++||..+++-..--+      -+.. ..
T Consensus        76 ~~y~~~~~~~Pk~i~~~g~p~~~~~idaa~~~~~g~~Y~FkG~-------~y~ryd~~~~~v~~gyPk~i~~~w~gvp~~  148 (195)
T d1itva_          76 WVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGR-------RLWRFDVKAQMVDPRSASEVDRMFPGVPLD  148 (195)
T ss_dssp             EEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETT-------EEEEEETTTTEECGGGCEEHHHHSTTSCSS
T ss_pred             EEEcCccccCCEEhhhcCCCCCchheeeEEEcCCCeEEEEecc-------EEEEEeCCcccccCCCccchhhhcCCCCCC
Confidence            9997543211 12222  2222222223333  6799999554       38999987764322100      0111 11


Q ss_pred             CCcEEEECCEEEEEecCCCCeEEEEeCCCCc
Q 045821          251 RGPAVVVDDALYVLDQSSGTKLMMWQKESRE  281 (352)
Q Consensus       251 ~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~  281 (352)
                      ..++...++++|++-|.   ..++||..+..
T Consensus       149 idaAf~~~~~~Yffkg~---~y~r~~~~~~~  176 (195)
T d1itva_         149 THDVFQFREKAYFCQDR---FYWRVSSRSEL  176 (195)
T ss_dssp             CSEEEEETTEEEEEETT---EEEEEECCTTC
T ss_pred             CcEEEEeCCcEEEEECC---EEEEEcCCcee
Confidence            23355678999999776   78999976543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.44  E-value=0.067  Score=44.41  Aligned_cols=198  Identities=11%  Similarity=0.075  Sum_probs=102.3

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEec-cCCCcccCCcceEEEEE-CCEEEEEeCCCCCCCCCCeEEEEECCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIH-ELPARTLRRKGMGFEVL-GKNAYLLGGCGWSEDATSEVYCYDASM  145 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~-~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t  145 (352)
                      ++.||+..    ...-.++.+||  .+....... +...     .-+.++.. ++.+|+....+.  .....+..++..+
T Consensus        50 ~G~Ly~~D----~~~g~I~ri~p--~g~~~~~~~~~~~~-----~p~gla~~~dG~l~va~~~~~--~~~~~i~~~~~~~  116 (319)
T d2dg1a1          50 QGQLFLLD----VFEGNIFKINP--ETKEIKRPFVSHKA-----NPAAIKIHKDGRLFVCYLGDF--KSTGGIFAATENG  116 (319)
T ss_dssp             TSCEEEEE----TTTCEEEEECT--TTCCEEEEEECSSS-----SEEEEEECTTSCEEEEECTTS--SSCCEEEEECTTS
T ss_pred             CCCEEEEE----CCCCEEEEEEC--CCCeEEEEEeCCCC-----CeeEEEECCCCCEEEEecCCC--ccceeEEEEcCCC
Confidence            55688873    22336778899  776544432 2221     11334433 678888743211  2245678888887


Q ss_pred             CeeEecCC-CCCcceeeeeEE-ECCEEEEEeCCCCC----CceEEEeCCCCcEEEecCCCCcccceeEEE-ECC-EEEEE
Q 045821          146 NTWTDAAP-MSTARCYFPCGV-LNQKIYCIGGLGDT----HSWDVYDPRTNNWKLHTEPNIFTEIEDSFV-MDG-KIYIR  217 (352)
Q Consensus       146 ~~W~~~~~-~~~~r~~~~~~~-~~~~iyv~gG~~~~----~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~g-~iyv~  217 (352)
                      .....+.. ..........++ -+|++|+..-....    ..++++++.....+.+....  ..-...+. -++ .||+.
T Consensus       117 ~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~--~~pnGia~s~dg~~lyva  194 (319)
T d2dg1a1         117 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI--SVANGIALSTDEKVLWVT  194 (319)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE--SSEEEEEECTTSSEEEEE
T ss_pred             ceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeecc--ceeeeeeeccccceEEEe
Confidence            76554432 222222222222 26788886432111    56888898887776653211  11112232 244 68887


Q ss_pred             ccCCCCCCceEEEEEeCCCCc---ee---ecCCCCCCCCC--CcEEEECCEEEEEecCCCCeEEEEeCCCCceEEcc
Q 045821          218 CSASAATSHVCALVYEPSTDS---WL---HADANMASGWR--GPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVG  286 (352)
Q Consensus       218 GG~~~~~~~~~i~~yd~~~~~---W~---~~~~~~~~~~~--~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~  286 (352)
                      -.     ....|++||...+.   ..   ...........  +.++-.+|.||+..-..+ .|.+||++.+.-.++.
T Consensus       195 d~-----~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g-~V~~~~p~G~~l~~i~  265 (319)
T d2dg1a1         195 ET-----TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQG-RVLVFNKRGYPIGQIL  265 (319)
T ss_dssp             EG-----GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTT-EEEEECTTSCEEEEEE
T ss_pred             cc-----cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCC-EEEEECCCCcEEEEEe
Confidence            32     22368888765431   11   11110111111  122334678998754333 8999999876666663

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.40  E-value=0.045  Score=45.55  Aligned_cols=194  Identities=11%  Similarity=0.072  Sum_probs=101.2

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEec-CCCCCcceeeeeEEE-CCEEEEEeCCC--CCCceEEEeCCCCcEEE
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDA-APMSTARCYFPCGVL-NQKIYCIGGLG--DTHSWDVYDPRTNNWKL  194 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~-~~~~~~r~~~~~~~~-~~~iyv~gG~~--~~~~v~~yd~~t~~W~~  194 (352)
                      ++.||+..      .....++++||.++..... .+...  ..++++.- ++++|+....+  ....+..++..+.....
T Consensus        50 ~G~Ly~~D------~~~g~I~ri~p~g~~~~~~~~~~~~--~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~  121 (319)
T d2dg1a1          50 QGQLFLLD------VFEGNIFKINPETKEIKRPFVSHKA--NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD  121 (319)
T ss_dssp             TSCEEEEE------TTTCEEEEECTTTCCEEEEEECSSS--SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred             CCCEEEEE------CCCCEEEEEECCCCeEEEEEeCCCC--CeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeee
Confidence            45688874      2345789999988764332 22211  12333333 68899875322  22667888888877655


Q ss_pred             ecCC-CCcccce-eEEEECCEEEEEccCC-CCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEEC-CEEEEEecCCCC
Q 045821          195 HTEP-NIFTEIE-DSFVMDGKIYIRCSAS-AATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVD-DALYVLDQSSGT  270 (352)
Q Consensus       195 ~~~~-~~~~~~~-~~~~~~g~iyv~GG~~-~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~l~~~gg~~~~  270 (352)
                      +... ....... .++.-+|++|+-.-.. .......++++++.....+.+......+ .+.++.-+ +.||+.....+ 
T Consensus       122 ~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~p-nGia~s~dg~~lyvad~~~~-  199 (319)
T d2dg1a1         122 IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVA-NGIALSTDEKVLWVTETTAN-  199 (319)
T ss_dssp             EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSE-EEEEECTTSSEEEEEEGGGT-
T ss_pred             eccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeecccee-eeeeeccccceEEEecccCC-
Confidence            5432 2222222 2333478998863211 1122347888988877776653321110 11122223 46887765444 


Q ss_pred             eEEEEeCCCCc---eEEccCCCCCcC--CCCceEEE-eCCEEEEEc-CCceEEEEEcCC
Q 045821          271 KLMMWQKESRE---WSPVGRLSTLLT--RPPCKLVA-IGKTIFVIG-KGCSAVVIDVGN  322 (352)
Q Consensus       271 ~v~~yd~~~~~---W~~~~~~~~~~~--~~~~~~~~-~~~~i~v~g-G~~~~~~~d~~~  322 (352)
                      .|++||.+.+.   .......+....  ..--++++ -++.|||.. +...+..||++-
T Consensus       200 ~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G  258 (319)
T d2dg1a1         200 RLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG  258 (319)
T ss_dssp             EEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred             ceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCC
Confidence            89999876431   111111111000  00113333 356788763 455788899864

>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.36  E-value=0.048  Score=41.69  Aligned_cols=95  Identities=16%  Similarity=0.185  Sum_probs=58.6

Q ss_pred             CCEEEEEeCCCCCCceEEEeCCCCcE---EEecC-CCC-cccceeEEE------ECCEEEEEccCCCCCCceEEEEEeCC
Q 045821          167 NQKIYCIGGLGDTHSWDVYDPRTNNW---KLHTE-PNI-FTEIEDSFV------MDGKIYIRCSASAATSHVCALVYEPS  235 (352)
Q Consensus       167 ~~~iyv~gG~~~~~~v~~yd~~t~~W---~~~~~-~~~-~~~~~~~~~------~~g~iyv~GG~~~~~~~~~i~~yd~~  235 (352)
                      ++++|++.|    +.+++|+..+-..   +.|.. .+. +....++..      -++++|++-|..       .+.||..
T Consensus        59 ~~~~yfFkG----~~yw~y~~~~~~~gyPk~i~~~~~glp~~iDAA~~~~~~~~~~~~~yfFkg~~-------yw~yd~~  127 (192)
T d1qhua1          59 HTSVYLIKG----DKVWVYTSEKNEKVYPKSLQDEFPGIPFPLDAAVECHRGECQDEGILFFQGNR-------KWFWDLT  127 (192)
T ss_dssp             TTEEEEEET----TEEEEECC-------CEEHHHHSTTCCSSCCEEEEECBBTBSSSEEEEEETTE-------EEEEETT
T ss_pred             CCcEEEEeC----CEEEEEeCCccccCCCcChHHhCCCCCCCceEEEEccccccCCCeEEEEeCCe-------EEEEeCC
Confidence            679999999    7889997654332   12221 111 111122333      278999996543       7899987


Q ss_pred             CCc-----eeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCc
Q 045821          236 TDS-----WLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESRE  281 (352)
Q Consensus       236 ~~~-----W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~  281 (352)
                      +..     |..++.      .-+++..+|++|++-|.   ..++||..+.+
T Consensus       128 ~~~~~~~~w~gip~------~daA~~~~g~~YfFkg~---~y~r~~~~~~~  169 (192)
T d1qhua1         128 TGTKKERSWPAVGN------CTSALRWLGRYYCFQGN---QFLRFNPVSGE  169 (192)
T ss_dssp             TTEEEEECCTTSCC------CSEEEEETTEEEEEETT---EEEEECTTTCC
T ss_pred             CCCcccccccCcCC------cceeEEeCCcEEEEECC---EEEEEcCCcce
Confidence            763     444321      23456679999999886   89999988754

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.32  E-value=0.2  Score=41.75  Aligned_cols=176  Identities=13%  Similarity=0.090  Sum_probs=80.8

Q ss_pred             CeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCC----cccc-eeEEEE
Q 045821          136 SEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNI----FTEI-EDSFVM  210 (352)
Q Consensus       136 ~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~----~~~~-~~~~~~  210 (352)
                      ..+.++|..+..-..................++.+++.|+.+  ..+.+||..+......-....    .+.. -..+.+
T Consensus       185 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  262 (388)
T d1erja_         185 RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLD--RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF  262 (388)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETT--SCEEEEETTTCCEEEEEC------CCCSSCEEEEEE
T ss_pred             eeeeeeeccccccccccccccccccccccCCCCCeEEEEcCC--CeEEEeecccCccceeeccccccccCCCCCEEEEEE
Confidence            457788887765443322222111111111255666767655  678899998876543321111    1111 112222


Q ss_pred             --CCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCC----------CCCCCCcEEE--ECCEEEEEecCCCCeEEEEe
Q 045821          211 --DGKIYIRCSASAATSHVCALVYEPSTDSWLHADANM----------ASGWRGPAVV--VDDALYVLDQSSGTKLMMWQ  276 (352)
Q Consensus       211 --~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~----------~~~~~~~~~~--~~~~l~~~gg~~~~~v~~yd  276 (352)
                        +++.++.|+.++     .+..||..+..-.......          ........+.  -++++++.|+.++ .|.+||
T Consensus       263 s~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg-~i~vwd  336 (388)
T d1erja_         263 TRDGQSVVSGSLDR-----SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR-GVLFWD  336 (388)
T ss_dssp             CTTSSEEEEEETTS-----EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS-EEEEEE
T ss_pred             CCCCCEEEEEECCC-----cEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCC-EEEEEE
Confidence              566666665442     4667776544332211100          0000001122  2567777777666 899999


Q ss_pred             CCCCceEEccCCCCCcCCCCceEEE-------eCCEEEEEcCCce-EEEEEcCC
Q 045821          277 KESREWSPVGRLSTLLTRPPCKLVA-------IGKTIFVIGKGCS-AVVIDVGN  322 (352)
Q Consensus       277 ~~~~~W~~~~~~~~~~~~~~~~~~~-------~~~~i~v~gG~~~-~~~~d~~~  322 (352)
                      ..+++-..  .+..- ...-.++..       .++.+++.||.+. +.++|+++
T Consensus       337 ~~~~~~~~--~l~~H-~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         337 KKSGNPLL--MLQGH-RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             TTTCCEEE--EEECC-SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CCCCcEEE--EEeCC-CCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeeee
Confidence            98765422  11110 000111111       2567777777664 44777754

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.28  E-value=0.072  Score=43.70  Aligned_cols=190  Identities=12%  Similarity=0.003  Sum_probs=95.8

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecCC
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEP  198 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~  198 (352)
                      ++.||.+.-      ....++++|+.+++-+... ++.. ....+..-++.+++...    ..+..||+.+++++.+.++
T Consensus        29 ~~~l~wvDi------~~~~I~r~d~~~g~~~~~~-~~~~-~~~i~~~~dg~l~va~~----~gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          29 SGTAWWFNI------LERELHELHLASGRKTVHA-LPFM-GSALAKISDSKQLIASD----DGLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             TTEEEEEEG------GGTEEEEEETTTTEEEEEE-CSSC-EEEEEEEETTEEEEEET----TEEEEEETTTCCEEEEECS
T ss_pred             CCEEEEEEC------CCCEEEEEECCCCeEEEEE-CCCC-cEEEEEecCCCEEEEEe----CccEEeecccceeeEEeee
Confidence            567777632      2467899999998755442 2221 11222223778887654    6799999999999888654


Q ss_pred             CCccc---ce-eEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEE-CCEEEEEecCCCCeEE
Q 045821          199 NIFTE---IE-DSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVV-DDALYVLDQSSGTKLM  273 (352)
Q Consensus       199 ~~~~~---~~-~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~l~~~gg~~~~~v~  273 (352)
                      .....   .. ..+--+|+||+-.-... ........|....++.+.+...... ..+.+... ++.+|+.....+ .++
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~-~~~~~g~l~~~~~g~~~~~~~~~~~-~Ng~~~s~d~~~l~~~dt~~~-~I~  173 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRK-AETGAGSIYHVAKGKVTKLFADISI-PNSICFSPDGTTGYFVDTKVN-RLM  173 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETT-CCTTCEEEEEEETTEEEEEEEEESS-EEEEEECTTSCEEEEEETTTC-EEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEecccc-ccccceeEeeecCCcEEEEeeccCC-cceeeecCCCceEEEeecccc-eee
Confidence            33221   11 22333788888532221 1111223333344555554321111 01112222 345666654443 899


Q ss_pred             EEeCCCC--ce----EEccCCCCCcCCCCceEEE-eCCEEEEEc-CCceEEEEEcCCcc
Q 045821          274 MWQKESR--EW----SPVGRLSTLLTRPPCKLVA-IGKTIFVIG-KGCSAVVIDVGNIG  324 (352)
Q Consensus       274 ~yd~~~~--~W----~~~~~~~~~~~~~~~~~~~-~~~~i~v~g-G~~~~~~~d~~~~~  324 (352)
                      +|+.+.+  ..    ......+.. .....++++ -++.||+.. +...+..||++...
T Consensus       174 ~~~~d~~~~~~~~~~~~~~~~~~~-~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~  231 (295)
T d2ghsa1         174 RVPLDARTGLPTGKAEVFIDSTGI-KGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNH  231 (295)
T ss_dssp             EEEBCTTTCCBSSCCEEEEECTTS-SSEEEEEEECTTSCEEEEEETTTEEEEECTTCCE
T ss_pred             EeeecccccccccceEEEeccCcc-cccccceEEcCCCCEEeeeeCCCceEEecCCCcE
Confidence            9876532  11    111111111 111123333 356788762 33367789987544

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.18  E-value=0.021  Score=46.46  Aligned_cols=146  Identities=12%  Similarity=0.093  Sum_probs=74.8

Q ss_pred             CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEE-EECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCC
Q 045821          167 NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSF-VMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADAN  245 (352)
Q Consensus       167 ~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~-~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~  245 (352)
                      +++.++.|+.+  ..+.+||..+.+...+........-..++ .-+++.++.|+..+     .+..||..++........
T Consensus       147 ~~~~l~~g~~d--g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~~~~~~~~~~~~~~~~  219 (299)
T d1nr0a2         147 DKQFVAVGGQD--SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR-----KVIPYSVANNFELAHTNS  219 (299)
T ss_dssp             TSCEEEEEETT--SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTS-----CEEEEEGGGTTEESCCCC
T ss_pred             ccccccccccc--cccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccccccc
Confidence            45666667655  67889998887655443221111111222 22566666655443     488888877655433222


Q ss_pred             CCCCCCCc-EE--EECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEcCCce-EEEEEc
Q 045821          246 MASGWRGP-AV--VVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCS-AVVIDV  320 (352)
Q Consensus       246 ~~~~~~~~-~~--~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~-~~~~d~  320 (352)
                      ........ .+  ..++++++.|+.++ .+.+||.++.....+............+++..++..++.||.+. +.++|+
T Consensus       220 ~~~h~~~v~~l~~s~~~~~l~sgs~dg-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         220 WTFHTAKVACVSWSPDNVRLATGSLDN-SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred             ccccccccccccccccccceEEEcCCC-EEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEec
Confidence            21111111 12  23677777887766 89999988765433321111111111223333444455555554 446664

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=96.12  E-value=0.28  Score=40.36  Aligned_cols=236  Identities=11%  Similarity=0.002  Sum_probs=112.4

Q ss_pred             CCEEEEEEecC---CCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE--CCEEEEEeCCCCCCCCCCeEEEEE
Q 045821           68 ETWIYAFCRDN---KLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL--GKNAYLLGGCGWSEDATSEVYCYD  142 (352)
Q Consensus        68 ~~~l~~~gg~~---~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d  142 (352)
                      ++.||+.....   ....-.++.+|+  .++.+............-.-..++.-  ++.+|+..+       ...+.++|
T Consensus        28 dG~ly~~~~~~~~~~~~~g~I~r~d~--~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~-------~~~i~~~~   98 (314)
T d1pjxa_          28 NGDFYIVAPEVEVNGKPAGEILRIDL--KTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-------RLGLLVVQ   98 (314)
T ss_dssp             TSCEEEEETTCEETTEECCEEEEECT--TTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-------TTEEEEEE
T ss_pred             CCCEEEEECccccccccCCEEEEEEC--CCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC-------CCeEEEEe
Confidence            67788874321   111225788999  88887666432210001111223333  356888754       24578899


Q ss_pred             CCCCeeEecCCCCCcc---eeeeeEEE-CCEEEEEeCCCC--C-----------CceEEEeCCCCcEEEecCCCCcccce
Q 045821          143 ASMNTWTDAAPMSTAR---CYFPCGVL-NQKIYCIGGLGD--T-----------HSWDVYDPRTNNWKLHTEPNIFTEIE  205 (352)
Q Consensus       143 ~~t~~W~~~~~~~~~r---~~~~~~~~-~~~iyv~gG~~~--~-----------~~v~~yd~~t~~W~~~~~~~~~~~~~  205 (352)
                      +..+....+......+   .....++- +|.+|+......  .           ..++++++.. +...+....... ..
T Consensus        99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~~~~~p-NG  176 (314)
T d1pjxa_          99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDTAFQFP-NG  176 (314)
T ss_dssp             TTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEEEESSE-EE
T ss_pred             CCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeCCccee-ee
Confidence            9877655443322221   11223332 578998632110  0           4677887754 344433111111 11


Q ss_pred             eEEEECC-----EEEEEccCCCCCCceEEEEEeCCCCc---eeec-CCCCCCCCC---CcEEEECCEEEEEecCCCCeEE
Q 045821          206 DSFVMDG-----KIYIRCSASAATSHVCALVYEPSTDS---WLHA-DANMASGWR---GPAVVVDDALYVLDQSSGTKLM  273 (352)
Q Consensus       206 ~~~~~~g-----~iyv~GG~~~~~~~~~i~~yd~~~~~---W~~~-~~~~~~~~~---~~~~~~~~~l~~~gg~~~~~v~  273 (352)
                      .+..-++     .||+....     ...+++||...+.   +.++ .........   +.++-.+|.||+..-.. ..|+
T Consensus       177 i~~~~d~d~~~~~lyv~d~~-----~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~-g~I~  250 (314)
T d1pjxa_         177 IAVRHMNDGRPYQLIVAETP-----TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS-SHIE  250 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETT-----TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT-TEEE
T ss_pred             eEECCCCCcceeEEEEEeec-----ccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCC-CEEE
Confidence            1222232     58887322     2368888754331   2221 111111111   11233478898775322 3899


Q ss_pred             EEeCCCCceEEccCCCCCcCCCCceEEE-e-CCEEEEEcCC-ceEEEEEcCCc
Q 045821          274 MWQKESREWSPVGRLSTLLTRPPCKLVA-I-GKTIFVIGKG-CSAVVIDVGNI  323 (352)
Q Consensus       274 ~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~-~~~i~v~gG~-~~~~~~d~~~~  323 (352)
                      +||+++......-.+|.   ....+++. - ++.|||.... ..++.+|....
T Consensus       251 ~~dp~~g~~~~~i~~p~---~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         251 VFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             EEeCCCCEEEEEEECCC---CCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence            99999776432212332   11122222 1 2368887543 34555665443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.06  E-value=0.27  Score=39.83  Aligned_cols=146  Identities=10%  Similarity=0.050  Sum_probs=81.0

Q ss_pred             CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCC
Q 045821          167 NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANM  246 (352)
Q Consensus       167 ~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~  246 (352)
                      ++.+.+.+..+  ..+..||..+.+...................++...+.|+.++     .+..||..+..-...-.  
T Consensus       170 ~~~~~~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-----~i~i~d~~~~~~~~~~~--  240 (355)
T d1nexb2         170 HGNIVVSGSYD--NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT-----TIRIWDLENGELMYTLQ--  240 (355)
T ss_dssp             ETTEEEEEETT--SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS-----CEEEEETTTCCEEEEEC--
T ss_pred             ccceeeeeccc--ceeeeeecccccceeeeeccccccccccccccceeeecccccc-----eEEeeeccccccccccc--
Confidence            34455555544  5788899888765444322222222223333566666655442     47778887665433211  


Q ss_pred             CCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEEEeCCEEEEEcCCceEEEEEcCCccc
Q 045821          247 ASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGCSAVVIDVGNIGN  325 (352)
Q Consensus       247 ~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~d~~~~~w  325 (352)
                      .+...-..+..+++.++.|+.++ .+.+||..+..-.......   ..........++++++.|....+.+||+++...
T Consensus       241 ~h~~~v~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~  315 (355)
T d1nexb2         241 GHTALVGLLRLSDKFLVSAAADG-SIRGWDANDYSRKFSYHHT---NLSAITTFYVSDNILVSGSENQFNIYNLRSGKL  315 (355)
T ss_dssp             CCSSCCCEEEECSSEEEEECTTS-EEEEEETTTCCEEEEEECT---TCCCCCEEEECSSEEEEEETTEEEEEETTTCCB
T ss_pred             cccccccccccccceeeeeeccc-ccccccccccceecccccC---CceEEEEEcCCCCEEEEEeCCEEEEEECCCCCE
Confidence            11111234556777777887766 8999999876533222111   122233445677777766555677899886543

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.2  Score=38.14  Aligned_cols=147  Identities=5%  Similarity=-0.017  Sum_probs=80.5

Q ss_pred             eeEEECCEEEEEeCCCCCCceEEEeCCCCcEE--EecC-CCC-cccceeEEEE--CCEEEEEccCCCCCCceEEEEEeCC
Q 045821          162 PCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWK--LHTE-PNI-FTEIEDSFVM--DGKIYIRCSASAATSHVCALVYEPS  235 (352)
Q Consensus       162 ~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~--~~~~-~~~-~~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~  235 (352)
                      +++.++|.+|++-|    ..++..+.......  .+.. .+. +..-.++...  ++++|++-|..       .++|+..
T Consensus        16 Av~~~~G~~y~Fkg----~~~wr~~~~~~~~~p~~i~~~w~glp~~IDAAf~~~~~~~~yfFkG~~-------y~~y~~~   84 (195)
T d1su3a2          16 AITTIRGEVMFFKD----RFYMRTNPFYPEVELNFISVFWPQLPNGLEAAYEFADRDEVRFFKGNK-------YWAVQGQ   84 (195)
T ss_dssp             EEEEETTEEEEEET----TEEEECCTTSSSCEEEEGGGTCTTSCSSCCEEEEEGGGTEEEEEETTE-------EEEEETT
T ss_pred             EEEEcCCeEEEEeC----CEEEEeeCCCCccCccchHhhCcCCCCcccceEEecCCcEEEEECCcE-------EEEEcCC
Confidence            56677999999988    55677665554432  1221 111 1112234434  58999986554       8888753


Q ss_pred             CCce---eecCC--CCCCC-CCC-cEEEE--CCEEEEEecCCCCeEEEEeCCCCceE-----EccC-CCCCcCCCCceEE
Q 045821          236 TDSW---LHADA--NMASG-WRG-PAVVV--DDALYVLDQSSGTKLMMWQKESREWS-----PVGR-LSTLLTRPPCKLV  300 (352)
Q Consensus       236 ~~~W---~~~~~--~~~~~-~~~-~~~~~--~~~l~~~gg~~~~~v~~yd~~~~~W~-----~~~~-~~~~~~~~~~~~~  300 (352)
                      +...   ..+..  ..+.. ..- ++...  ++++|++-|.   ..++||..+++-.     .+.. .+. .+...-++.
T Consensus        85 ~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG~---~y~ry~~~~~~vd~gyPk~I~~~w~G-vp~~iDAAf  160 (195)
T d1su3a2          85 NVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVAN---KYWRYDEYKRSMDPGYPKMIAHDFPG-IGHKVDAVF  160 (195)
T ss_dssp             EECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETT---EEEEEETTTTEECSSCSEEHHHHSTT-SCSCCSEEE
T ss_pred             ccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeCC---EEEEEeccCccccCCcccccccccCC-CCCCccEEE
Confidence            3211   11100  01111 111 22332  5799999886   8999998876432     1211 111 112223445


Q ss_pred             EeCCEEEEEcCCceEEEEEcCCcc
Q 045821          301 AIGKTIFVIGKGCSAVVIDVGNIG  324 (352)
Q Consensus       301 ~~~~~i~v~gG~~~~~~~d~~~~~  324 (352)
                      ..++++|++-|. ..+-||....+
T Consensus       161 ~~~g~~YfFkg~-~y~r~~~~~~~  183 (195)
T d1su3a2         161 MKDGFFYFFHGT-RQYKFDPKTKR  183 (195)
T ss_dssp             EETTEEEEEETT-EEEEEETTTTE
T ss_pred             EECCeEEEEECC-EEEEEeCCcCE
Confidence            679999999876 45568876543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.03  E-value=0.075  Score=43.88  Aligned_cols=143  Identities=11%  Similarity=0.045  Sum_probs=78.8

Q ss_pred             CeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEE
Q 045821          136 SEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIY  215 (352)
Q Consensus       136 ~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iy  215 (352)
                      .+++++|..+++...++.  ..+.......-+++..+++|.+....+.+||..++.-+++..... .....+..-+|+..
T Consensus        24 g~v~v~d~~~~~~~~~~~--~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l  100 (360)
T d1k32a3          24 GQAFIQDVSGTYVLKVPE--PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLG-NVFAMGVDRNGKFA  100 (360)
T ss_dssp             TEEEEECTTSSBEEECSC--CSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCC-SEEEEEECTTSSEE
T ss_pred             CeEEEEECCCCcEEEccC--CCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCc-eEEeeeeccccccc
Confidence            467778888877777643  223322222226766555554333568999999988776642211 11122233367666


Q ss_pred             EEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCC---------CeEEEEeCCCCceEEcc
Q 045821          216 IRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSG---------TKLMMWQKESREWSPVG  286 (352)
Q Consensus       216 v~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~---------~~v~~yd~~~~~W~~~~  286 (352)
                      +.++..     ..++.++..+.+...+...........+...+++.+++.....         ..+.+||..+++=..+.
T Consensus       101 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~  175 (360)
T d1k32a3         101 VVANDR-----FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT  175 (360)
T ss_dssp             EEEETT-----SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS
T ss_pred             ceeccc-----cccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec
Confidence            665444     2578888887766544332222222333444666555432111         35788999887654443

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.98  E-value=0.23  Score=40.18  Aligned_cols=106  Identities=7%  Similarity=0.059  Sum_probs=53.5

Q ss_pred             CCEEEEEccCCCCCCceEEEEEeCCCCceee-cCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceEEccCCC
Q 045821          211 DGKIYIRCSASAATSHVCALVYEPSTDSWLH-ADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVGRLS  289 (352)
Q Consensus       211 ~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~  289 (352)
                      .+.+++.|+.++     .+..||..+.+-.. +.. ........+...++.+++.|+.++ .+..||.........-...
T Consensus       195 ~~~~~~~~~~d~-----~v~i~d~~~~~~~~~~~~-h~~~i~~v~~~p~~~~l~s~s~d~-~i~~~~~~~~~~~~~~~~~  267 (340)
T d1tbga_         195 DTRLFVSGACDA-----SAKLWDVREGMCRQTFTG-HESDINAICFFPNGNAFATGSDDA-TCRLFDLRADQELMTYSHD  267 (340)
T ss_dssp             TSSEEEEEETTT-----EEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTTEEEEEECCT
T ss_pred             ccceeEEeecCc-----eEEEEECCCCcEEEEEeC-CCCCeEEEEECCCCCEEEEEeCCC-eEEEEeecccccccccccc
Confidence            455666654442     57778876654322 111 110000011122567777777665 8899999876654432222


Q ss_pred             CCcCCCCceEE-EeCCEEEEEcCCc-eEEEEEcCCcc
Q 045821          290 TLLTRPPCKLV-AIGKTIFVIGKGC-SAVVIDVGNIG  324 (352)
Q Consensus       290 ~~~~~~~~~~~-~~~~~i~v~gG~~-~~~~~d~~~~~  324 (352)
                      .. .....++. ..++++++.|+.+ .+.+||+.+..
T Consensus       268 ~~-~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~  303 (340)
T d1tbga_         268 NI-ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD  303 (340)
T ss_dssp             TC-CSCEEEEEECSSSCEEEEEETTSCEEEEETTTCC
T ss_pred             cc-cCceEEEEECCCCCEEEEEECCCEEEEEECCCCc
Confidence            11 11111222 2255666666554 46689987644

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.34  Score=38.98  Aligned_cols=149  Identities=13%  Similarity=0.166  Sum_probs=79.8

Q ss_pred             EEECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceee-c
Q 045821          164 GVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLH-A  242 (352)
Q Consensus       164 ~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~-~  242 (352)
                      ...++..++.|+.+  ..+..||..+.+-.....  .......++..++++++.|+.++     .+..||..+.+-.. +
T Consensus       183 ~~~~~~~l~s~~~d--g~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~~~~l~s~s~d~-----~i~iwd~~~~~~~~~~  253 (342)
T d2ovrb2         183 LQFDGIHVVSGSLD--TSIRVWDVETGNCIHTLT--GHQSLTSGMELKDNILVSGNADS-----TVKIWDIKTGQCLQTL  253 (342)
T ss_dssp             EEECSSEEEEEETT--SCEEEEETTTCCEEEEEC--CCCSCEEEEEEETTEEEEEETTS-----CEEEEETTTCCEEEEE
T ss_pred             ccCCCCEEEEEeCC--CeEEEeecccceeeeEec--ccccceeEEecCCCEEEEEcCCC-----EEEEEecccccccccc
Confidence            33466666667655  678899998776433221  11122233444555666665543     47888887665433 3


Q ss_pred             CCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceE-EccCCCCCc-CCCCceEEE-eCCEEEEEcCCc-----e
Q 045821          243 DANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWS-PVGRLSTLL-TRPPCKLVA-IGKTIFVIGKGC-----S  314 (352)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~-~~~~~~~~~-~~~~~~~~~-~~~~i~v~gG~~-----~  314 (352)
                      ............+..++.+++.|+.++ .|.+||.++++.. ++....... ...-.++.. .++.+++.|+.+     .
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~s~s~Dg-~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~  332 (342)
T d2ovrb2         254 QGPNKHQSAVTCLQFNKNFVITSSDDG-TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETK  332 (342)
T ss_dssp             CSTTSCSSCEEEEEECSSEEEEEETTS-EEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCE
T ss_pred             cccceeeeceeecccCCCeeEEEcCCC-EEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeE
Confidence            222222222223456777788888776 8999999987653 332222110 011112222 244566666544     2


Q ss_pred             EEEEEcCC
Q 045821          315 AVVIDVGN  322 (352)
Q Consensus       315 ~~~~d~~~  322 (352)
                      .+++|...
T Consensus       333 l~~~Df~~  340 (342)
T d2ovrb2         333 LLVLDFDV  340 (342)
T ss_dssp             EEEEECCC
T ss_pred             EEEEeCCC
Confidence            55666554

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.28  Score=37.30  Aligned_cols=147  Identities=7%  Similarity=0.103  Sum_probs=78.6

Q ss_pred             eeEEECCEEEEEeCCCCCCceEEEeCCCCcEE----EecC-CCCc-ccceeEEEE--CCEEEEEccCCCCCCceEEEEEe
Q 045821          162 PCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWK----LHTE-PNIF-TEIEDSFVM--DGKIYIRCSASAATSHVCALVYE  233 (352)
Q Consensus       162 ~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~----~~~~-~~~~-~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd  233 (352)
                      +++.++|.+|++-|    ..+++|+.......    .+.. .+.. ..--++...  ++++|.+-|..       +++|+
T Consensus        11 Av~~~~G~~y~Fkg----~~ywr~~~~~~~~~~~P~~I~~~w~glp~~IDAAf~~~~~~k~yfFkg~~-------~~~y~   79 (195)
T d1itva_          11 AIAEIGNQLYLFKD----GKYWRFSEGRGSRPQGPFLIADKWPALPRKLDSVFEEPLSKKLFFFSGRQ-------VWVYT   79 (195)
T ss_dssp             EEEEETTEEEEEET----TEEEEECCSSSCCCEEEEEHHHHCTTSCSSCSEEEECTTTCCEEEEETTE-------EEEEE
T ss_pred             eEEEeCCEEEEEEC----CEEEEEeCCCCCcCCCcEEeeeecCCCCCCccEEEEECCCCEEEEEecCE-------EEEEc
Confidence            46678999999998    67788876543321    1221 1111 122233333  67899885443       77786


Q ss_pred             CCCCce-eecCC-CCCCC-CCCcEE-E-ECCEEEEEecCCCCeEEEEeCCCCceEE-----ccCCCCCcCCCCceEEEeC
Q 045821          234 PSTDSW-LHADA-NMASG-WRGPAV-V-VDDALYVLDQSSGTKLMMWQKESREWSP-----VGRLSTLLTRPPCKLVAIG  303 (352)
Q Consensus       234 ~~~~~W-~~~~~-~~~~~-~~~~~~-~-~~~~l~~~gg~~~~~v~~yd~~~~~W~~-----~~~~~~~~~~~~~~~~~~~  303 (352)
                      -.+-.- ..+.. ..+.. ..-.++ . .++++|++-|.   ..++||..+++-..     +...-...+...-++....
T Consensus        80 ~~~~~~Pk~i~~~g~p~~~~~idaa~~~~~g~~Y~FkG~---~y~ryd~~~~~v~~gyPk~i~~~w~gvp~~idaAf~~~  156 (195)
T d1itva_          80 GASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGR---RLWRFDVKAQMVDPRSASEVDRMFPGVPLDTHDVFQFR  156 (195)
T ss_dssp             TTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETT---EEEEEETTTTEECGGGCEEHHHHSTTSCSSCSEEEEET
T ss_pred             CccccCCEEhhhcCCCCCchheeeEEEcCCCeEEEEecc---EEEEEeCCcccccCCCccchhhhcCCCCCCCcEEEEeC
Confidence            432111 11211 11111 111222 2 36899999876   89999998764321     2110011122234455668


Q ss_pred             CEEEEEcCCceEEEEEcCCc
Q 045821          304 KTIFVIGKGCSAVVIDVGNI  323 (352)
Q Consensus       304 ~~i~v~gG~~~~~~~d~~~~  323 (352)
                      +++|+|-|. ..+-|+..+.
T Consensus       157 ~~~Yffkg~-~y~r~~~~~~  175 (195)
T d1itva_         157 EKAYFCQDR-FYWRVSSRSE  175 (195)
T ss_dssp             TEEEEEETT-EEEEEECCTT
T ss_pred             CcEEEEECC-EEEEEcCCce
Confidence            899999775 3455775543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.73  E-value=0.38  Score=38.87  Aligned_cols=135  Identities=10%  Similarity=0.069  Sum_probs=71.9

Q ss_pred             CeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEE
Q 045821          136 SEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIY  215 (352)
Q Consensus       136 ~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iy  215 (352)
                      ..+..+|..+.+..................-++..++.++.+  ..+.+||..+..-...-  ........++..+++.+
T Consensus       181 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~i~i~d~~~~~~~~~~--~~h~~~v~~~~~~~~~l  256 (355)
T d1nexb2         181 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD--TTIRIWDLENGELMYTL--QGHTALVGLLRLSDKFL  256 (355)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT--SCEEEEETTTCCEEEEE--CCCSSCCCEEEECSSEE
T ss_pred             ceeeeeecccccceeeeeccccccccccccccceeeeccccc--ceEEeeecccccccccc--cccccccccccccccee
Confidence            457788888776443322222222222222245555556544  67889999887643322  11112223455667777


Q ss_pred             EEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCce
Q 045821          216 IRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREW  282 (352)
Q Consensus       216 v~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W  282 (352)
                      +.|+.++     .+..||..+..-..... ............++++++.|. ++ .+.+||.++++.
T Consensus       257 ~~~~~dg-----~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~-d~-~i~vwd~~tg~~  315 (355)
T d1nexb2         257 VSAAADG-----SIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-EN-QFNIYNLRSGKL  315 (355)
T ss_dssp             EEECTTS-----EEEEEETTTCCEEEEEE-CTTCCCCCEEEECSSEEEEEE-TT-EEEEEETTTCCB
T ss_pred             eeeeccc-----ccccccccccceecccc-cCCceEEEEEcCCCCEEEEEe-CC-EEEEEECCCCCE
Confidence            7765543     57788887654322111 111112223455777665554 44 899999988764

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.69  E-value=0.24  Score=39.36  Aligned_cols=141  Identities=14%  Similarity=0.068  Sum_probs=76.5

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecC--CCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEe
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAA--PMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLH  195 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~--~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~  195 (352)
                      ++.||+..-      ....+..+++.........  .+..|+   +.+.- ++++|+.....  ..+..||+.......+
T Consensus       108 ~g~i~v~d~------~~~~~~~~~~~~~~~~~~~~~~~~~p~---~i~~~~~g~~~v~~~~~--~~i~~~d~~~~~~~~~  176 (260)
T d1rwia_         108 QGAVYVADR------GNNRVVKLAAGSKTQTVLPFTGLNDPD---GVAVDNSGNVYVTDTDN--NRVVKLEAESNNQVVL  176 (260)
T ss_dssp             TCCEEEEEG------GGTEEEEECTTCSSCEECCCCSCCSCC---EEEECTTCCEEEEEGGG--TEEEEECTTTCCEEEC
T ss_pred             cceeEeecc------ccccccccccccceeeeeeecccCCcc---eeeecCCCCEeeecccc--ccccccccccceeeee
Confidence            567887642      2345677777665433322  222232   22222 56788875433  6789999987765544


Q ss_pred             cCCCCcccceeEEE-ECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEE--CCEEEEEecCCCCeE
Q 045821          196 TEPNIFTEIEDSFV-MDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVV--DDALYVLDQSSGTKL  272 (352)
Q Consensus       196 ~~~~~~~~~~~~~~-~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~v  272 (352)
                      ... ....-..+++ -+|+||+..-.     ...+.+|++.......+.....  .....+.+  +|.||+....++ .|
T Consensus       177 ~~~-~~~~p~gi~~d~~g~l~vsd~~-----~~~i~~~~~~~~~~~~~~~~~~--~~P~~i~~d~~g~l~vad~~~~-rI  247 (260)
T d1rwia_         177 PFT-DITAPWGIAVDEAGTVYVTEHN-----TNQVVKLLAGSTTSTVLPFTGL--NTPLAVAVDSDRTVYVADRGND-RV  247 (260)
T ss_dssp             CCS-SCCSEEEEEECTTCCEEEEETT-----TTEEEEECTTCSCCEECCCCSC--CCEEEEEECTTCCEEEEEGGGT-EE
T ss_pred             ecc-ccCCCccceeeeeeeeeeeecC-----CCEEEEEeCCCCeEEEEccCCC--CCeEEEEEeCCCCEEEEECCCC-EE
Confidence            321 1111122333 36799998422     2368889887776665533111  11122333  568888765443 88


Q ss_pred             EEEeCCC
Q 045821          273 MMWQKES  279 (352)
Q Consensus       273 ~~yd~~~  279 (352)
                      .+++...
T Consensus       248 ~~i~~~~  254 (260)
T d1rwia_         248 VKLTSLE  254 (260)
T ss_dssp             EEECCCG
T ss_pred             EEEeCCC
Confidence            8877654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.66  E-value=0.39  Score=38.49  Aligned_cols=188  Identities=9%  Similarity=0.101  Sum_probs=99.4

Q ss_pred             ECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCC----CcceeeeeEEEC--CEEEEEeCCCCCCceEEEeCCCCc
Q 045821          118 LGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMS----TARCYFPCGVLN--QKIYCIGGLGDTHSWDVYDPRTNN  191 (352)
Q Consensus       118 ~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~----~~r~~~~~~~~~--~~iyv~gG~~~~~~v~~yd~~t~~  191 (352)
                      .++.|||...      ....+.+||+..+--+.++...    ........+..+  +..++..... ...+..++.....
T Consensus        32 ~dg~i~VaD~------~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~g~~  104 (279)
T d1q7fa_          32 AQNDIIVADT------NNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-THQIQIYNQYGQF  104 (279)
T ss_dssp             TTCCEEEEEG------GGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-GCEEEEECTTSCE
T ss_pred             CCCCEEEEEC------CCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCC-ccccccccccccc
Confidence            3678999853      2366889998754322333221    111223333332  3333332211 1567788887776


Q ss_pred             EEEecCCCCcccceeE-EEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCC-CcEEEECCEEEEEecCCC
Q 045821          192 WKLHTEPNIFTEIEDS-FVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWR-GPAVVVDDALYVLDQSSG  269 (352)
Q Consensus       192 W~~~~~~~~~~~~~~~-~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~-~~~~~~~~~l~~~gg~~~  269 (352)
                      ++.+... ........ +..+|.+|+.....     ..+..|++....-..+......... ..++..++.+|+.....+
T Consensus       105 ~~~~~~~-~~~~p~~~avd~~G~i~v~~~~~-----~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~  178 (279)
T d1q7fa_         105 VRKFGAT-ILQHPRGVTVDNKGRIIVVECKV-----MRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH  178 (279)
T ss_dssp             EEEECTT-TCSCEEEEEECTTSCEEEEETTT-----TEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred             eeecCCC-cccccceeccccCCcEEEEeecc-----ceeeEeccCCceeecccccccccccceeeeccceeEEeeecccc
Confidence            6666422 11222222 22367888884322     3578888876554444322111111 112233678998877655


Q ss_pred             CeEEEEeCCCCceEEccCCCCCcCCCCceEEE-eCCEEEEEcC--CceEEEEEcC
Q 045821          270 TKLMMWQKESREWSPVGRLSTLLTRPPCKLVA-IGKTIFVIGK--GCSAVVIDVG  321 (352)
Q Consensus       270 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~i~v~gG--~~~~~~~d~~  321 (352)
                       .+++||+..+...+++....  ...-.+++. -++.|||...  ...+.+|+++
T Consensus       179 -~V~~~d~~G~~~~~~g~~g~--~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~  230 (279)
T d1q7fa_         179 -CVKVFNYEGQYLRQIGGEGI--TNYPIGVGINSNGEILIADNHNNFNLTIFTQD  230 (279)
T ss_dssp             -EEEEEETTCCEEEEESCTTT--SCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred             -ceeeeecCCceeeeeccccc--ccCCcccccccCCeEEEEECCCCcEEEEECCC
Confidence             89999998877767653221  122233433 3567888743  2346678865

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.50  E-value=0.46  Score=38.24  Aligned_cols=51  Identities=14%  Similarity=0.064  Sum_probs=30.7

Q ss_pred             eEEEEeCCCCceEEccCCCCCcCCCCceEEE--eCCEEEEEcCCceEEEEEcCCccc
Q 045821          271 KLMMWQKESREWSPVGRLSTLLTRPPCKLVA--IGKTIFVIGKGCSAVVIDVGNIGN  325 (352)
Q Consensus       271 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~--~~~~i~v~gG~~~~~~~d~~~~~w  325 (352)
                      .+.+||..+++....-..+.    ...+++.  -+..+|+-+...++.+||+++..-
T Consensus       261 ~i~v~d~~~~~~~~~~~~~~----~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~  313 (337)
T d1pbyb_         261 VLESFDLEKNASIKRVPLPH----SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             EEEEEETTTTEEEEEEECSS----CCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred             cEEEEECCCCcEEEEEcCCC----CEEEEEECCCCCEEEEEeCCCcEEEEECCCCcE
Confidence            78899999877655433332    1223332  245567655444577999987543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.49  E-value=0.13  Score=43.09  Aligned_cols=190  Identities=12%  Similarity=0.046  Sum_probs=87.3

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEecCC
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEP  198 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~  198 (352)
                      ++..++.|+.+      ..+.++|..+.+...................++...+.|+.+  ..+.++|..+..-......
T Consensus       132 ~~~~l~s~~~d------g~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~~~  203 (388)
T d1erja_         132 DGKFLATGAED------RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD--RTVRIWDLRTGQCSLTLSI  203 (388)
T ss_dssp             TSSEEEEEETT------SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT--SEEEEEETTTTEEEEEEEC
T ss_pred             CCCcceecccc------cccccccccccccccccccccccccccccccccccccccccc--eeeeeeecccccccccccc
Confidence            45566666643      347888888877544332111111111111234444555433  5678889887754433221


Q ss_pred             CCcccceeEEE--ECCEEEEEccCCCCCCceEEEEEeCCCCceeec-CCCC-CCCCC-Cc--EEE--ECCEEEEEecCCC
Q 045821          199 NIFTEIEDSFV--MDGKIYIRCSASAATSHVCALVYEPSTDSWLHA-DANM-ASGWR-GP--AVV--VDDALYVLDQSSG  269 (352)
Q Consensus       199 ~~~~~~~~~~~--~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~-~~~~-~~~~~-~~--~~~--~~~~l~~~gg~~~  269 (352)
                      ...  ...+..  .++.+++.|+.++     .+..||..+...... .... ....+ ..  .+.  .+++.++.|+.++
T Consensus       204 ~~~--~~~~~~~~~~~~~l~~~~~d~-----~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~  276 (388)
T d1erja_         204 EDG--VTTVAVSPGDGKYIAAGSLDR-----AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR  276 (388)
T ss_dssp             SSC--EEEEEECSTTCCEEEEEETTS-----CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccc--cccccccCCCCCeEEEEcCCC-----eEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCC
Confidence            111  111222  2566777765543     477888877665432 2111 11111 11  122  2566677777665


Q ss_pred             CeEEEEeCCCCceEEccCCCCCc---------CCCCceEE-EeCCEEEEEcCCc-eEEEEEcCCcc
Q 045821          270 TKLMMWQKESREWSPVGRLSTLL---------TRPPCKLV-AIGKTIFVIGKGC-SAVVIDVGNIG  324 (352)
Q Consensus       270 ~~v~~yd~~~~~W~~~~~~~~~~---------~~~~~~~~-~~~~~i~v~gG~~-~~~~~d~~~~~  324 (352)
                       .+.+||..+..-......+...         .....++. ..++++++.|+.+ .+.+||.++..
T Consensus       277 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~  341 (388)
T d1erja_         277 -SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN  341 (388)
T ss_dssp             -EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC
T ss_pred             -cEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence             8999998765433221111100         00111121 2245666666654 46689987654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.83  E-value=0.74  Score=36.91  Aligned_cols=106  Identities=12%  Similarity=0.128  Sum_probs=55.4

Q ss_pred             CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEE-ECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCC
Q 045821          167 NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFV-MDGKIYIRCSASAATSHVCALVYEPSTDSWLHADAN  245 (352)
Q Consensus       167 ~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~  245 (352)
                      .+.+++.|+.+  ..+.+||..+..-...-...... -..++. -++++++.|+.++     .+..||.........-..
T Consensus       195 ~~~~~~~~~~d--~~v~i~d~~~~~~~~~~~~h~~~-i~~v~~~p~~~~l~s~s~d~-----~i~~~~~~~~~~~~~~~~  266 (340)
T d1tbga_         195 DTRLFVSGACD--ASAKLWDVREGMCRQTFTGHESD-INAICFFPNGNAFATGSDDA-----TCRLFDLRADQELMTYSH  266 (340)
T ss_dssp             TSSEEEEEETT--TEEEEEETTTTEEEEEECCCSSC-EEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEECC
T ss_pred             ccceeEEeecC--ceEEEEECCCCcEEEEEeCCCCC-eEEEEECCCCCEEEEEeCCC-----eEEEEeeccccccccccc
Confidence            34555655544  67888998876533221111111 111222 2567777765543     467788776654332211


Q ss_pred             CCCCCCCcEE--EECCEEEEEecCCCCeEEEEeCCCCc
Q 045821          246 MASGWRGPAV--VVDDALYVLDQSSGTKLMMWQKESRE  281 (352)
Q Consensus       246 ~~~~~~~~~~--~~~~~l~~~gg~~~~~v~~yd~~~~~  281 (352)
                      .........+  .-++++++.|+.++ .+.+||..+.+
T Consensus       267 ~~~~~~i~~~~~s~~~~~l~~g~~dg-~i~iwd~~~~~  303 (340)
T d1tbga_         267 DNIICGITSVSFSKSGRLLLAGYDDF-NCNVWDALKAD  303 (340)
T ss_dssp             TTCCSCEEEEEECSSSCEEEEEETTS-CEEEEETTTCC
T ss_pred             ccccCceEEEEECCCCCEEEEEECCC-EEEEEECCCCc
Confidence            1111111122  23667777777666 89999987654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.75  E-value=0.51  Score=38.47  Aligned_cols=155  Identities=12%  Similarity=-0.031  Sum_probs=84.0

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCe
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNT  147 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~  147 (352)
                      ++.++++++.     -.++++|.  .++...+++..     .+.....-.-+++..++.|.+.    ...++++|..+++
T Consensus        14 dG~~~a~~~~-----g~v~v~d~--~~~~~~~~~~~-----~~v~~~~~spDg~~l~~~~~~~----g~~v~v~d~~~~~   77 (360)
T d1k32a3          14 DGDLIAFVSR-----GQAFIQDV--SGTYVLKVPEP-----LRIRYVRRGGDTKVAFIHGTRE----GDFLGIYDYRTGK   77 (360)
T ss_dssp             GGGCEEEEET-----TEEEEECT--TSSBEEECSCC-----SCEEEEEECSSSEEEEEEEETT----EEEEEEEETTTCC
T ss_pred             CCCEEEEEEC-----CeEEEEEC--CCCcEEEccCC-----CCEEEEEECCCCCEEEEEEcCC----CCEEEEEECCCCc
Confidence            4555666543     15777898  88877766421     2222222333676655554322    2458899999988


Q ss_pred             eEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCC---
Q 045821          148 WTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAA---  223 (352)
Q Consensus       148 W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~---  223 (352)
                      -..+......-  ...+.. +++..+.++.+  ..+..++..+.....+...........+..-+|+.+++.+....   
T Consensus        78 ~~~~~~~~~~v--~~~~~spdg~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~  153 (360)
T d1k32a3          78 AEKFEENLGNV--FAMGVDRNGKFAVVANDR--FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGET  153 (360)
T ss_dssp             EEECCCCCCSE--EEEEECTTSSEEEEEETT--SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTT
T ss_pred             EEEeeCCCceE--Eeeeecccccccceeccc--cccccccccccceeeeeecccccccchhhccceeeeeeeccccccce
Confidence            77665432221  122222 55555555544  67888999888765554333333333334446766555433221   


Q ss_pred             --CCceEEEEEeCCCCceeec
Q 045821          224 --TSHVCALVYEPSTDSWLHA  242 (352)
Q Consensus       224 --~~~~~i~~yd~~~~~W~~~  242 (352)
                        .....+..+|..+++=..+
T Consensus       154 ~~~~~~~~~v~d~~~~~~~~~  174 (360)
T d1k32a3         154 DGYVMQAIHVYDMEGRKIFAA  174 (360)
T ss_dssp             CSCCEEEEEEEETTTTEEEEC
T ss_pred             eeccccceeeeccccCceeee
Confidence              1222677888877654443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.64  E-value=0.18  Score=40.45  Aligned_cols=145  Identities=14%  Similarity=0.076  Sum_probs=72.9

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecC
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTE  197 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~  197 (352)
                      ++..++.|+.      ...+.+||..+++...+........-.+++.. ++..++.|+.+  ..+..||..++.......
T Consensus       147 ~~~~l~~g~~------dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--~~i~~~~~~~~~~~~~~~  218 (299)
T d1nr0a2         147 DKQFVAVGGQ------DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQS--RKVIPYSVANNFELAHTN  218 (299)
T ss_dssp             TSCEEEEEET------TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETT--SCEEEEEGGGTTEESCCC
T ss_pred             cccccccccc------cccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccc
Confidence            3445555543      34678888877765443322111111122222 45555556544  678999998776543322


Q ss_pred             CCCcccce--eEE-EECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCc--EEEECCEEEEEecCCCCeE
Q 045821          198 PNIFTEIE--DSF-VMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGP--AVVVDDALYVLDQSSGTKL  272 (352)
Q Consensus       198 ~~~~~~~~--~~~-~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~--~~~~~~~l~~~gg~~~~~v  272 (352)
                      ....+...  +++ .-++++++.|+.++     .+..||..+.+...+...........  .+..++..++.|+.++ .|
T Consensus       219 ~~~~h~~~v~~l~~s~~~~~l~sgs~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~-~i  292 (299)
T d1nr0a2         219 SWTFHTAKVACVSWSPDNVRLATGSLDN-----SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDS-NI  292 (299)
T ss_dssp             CCCCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTS-CE
T ss_pred             cccccccccccccccccccceEEEcCCC-----EEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCC-EE
Confidence            21111111  222 23677777776553     47788887665433211111111111  2234555566677655 78


Q ss_pred             EEEeC
Q 045821          273 MMWQK  277 (352)
Q Consensus       273 ~~yd~  277 (352)
                      .+||.
T Consensus       293 ~iWdl  297 (299)
T d1nr0a2         293 KFWNV  297 (299)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            88875

>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.45  E-value=0.69  Score=34.88  Aligned_cols=102  Identities=15%  Similarity=0.127  Sum_probs=57.7

Q ss_pred             EECCEEEEEeCCCCCCCCCCeEEEEECCCCee---EecCC-CC-CcceeeeeEE------ECCEEEEEeCCCCCCceEEE
Q 045821          117 VLGKNAYLLGGCGWSEDATSEVYCYDASMNTW---TDAAP-MS-TARCYFPCGV------LNQKIYCIGGLGDTHSWDVY  185 (352)
Q Consensus       117 ~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W---~~~~~-~~-~~r~~~~~~~------~~~~iyv~gG~~~~~~v~~y  185 (352)
                      ..++++|+|-|        +.+|+|+..+-..   +.+.. .+ .|..-.++..      -++++|++-|    ...+.|
T Consensus        57 ~~~~~~yfFkG--------~~yw~y~~~~~~~gyPk~i~~~~~glp~~iDAA~~~~~~~~~~~~~yfFkg----~~yw~y  124 (192)
T d1qhua1          57 HGHTSVYLIKG--------DKVWVYTSEKNEKVYPKSLQDEFPGIPFPLDAAVECHRGECQDEGILFFQG----NRKWFW  124 (192)
T ss_dssp             ETTTEEEEEET--------TEEEEECC-------CEEHHHHSTTCCSSCCEEEEECBBTBSSSEEEEEET----TEEEEE
T ss_pred             cCCCcEEEEeC--------CEEEEEeCCccccCCCcChHHhCCCCCCCceEEEEccccccCCCeEEEEeC----CeEEEE
Confidence            34679999987        5678886543221   11111 11 1111112222      2689999999    778999


Q ss_pred             eCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCc
Q 045821          186 DPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDS  238 (352)
Q Consensus       186 d~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~  238 (352)
                      |..++.=.. ...+......+++..+|++|++-|..       .++||..+.+
T Consensus       125 d~~~~~~~~-~~w~gip~~daA~~~~g~~YfFkg~~-------y~r~~~~~~~  169 (192)
T d1qhua1         125 DLTTGTKKE-RSWPAVGNCTSALRWLGRYYCFQGNQ-------FLRFNPVSGE  169 (192)
T ss_dssp             ETTTTEEEE-ECCTTSCCCSEEEEETTEEEEEETTE-------EEEECTTTCC
T ss_pred             eCCCCCccc-ccccCcCCcceeEEeCCcEEEEECCE-------EEEEcCCcce
Confidence            998873111 11111122335666799999996554       7889887754

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=94.44  E-value=0.84  Score=36.73  Aligned_cols=66  Identities=12%  Similarity=0.026  Sum_probs=37.3

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-C-CEEEEEeCCCCCCCCCCeEEEEECCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-G-KNAYLLGGCGWSEDATSEVYCYDASM  145 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~d~~t  145 (352)
                      ++..+++++.+    ..+.++|.  .+++-.....++.   ...-..++.. + ..+|+.+..      ...+..||..+
T Consensus         7 ~~~~l~~~~~~----~~v~v~D~--~t~~~~~t~~~~~---~~~p~~l~~spDG~~l~v~~~~------~~~v~~~d~~t   71 (346)
T d1jmxb_           7 GHEYMIVTNYP----NNLHVVDV--ASDTVYKSCVMPD---KFGPGTAMMAPDNRTAYVLNNH------YGDIYGIDLDT   71 (346)
T ss_dssp             TCEEEEEEETT----TEEEEEET--TTTEEEEEEECSS---CCSSCEEEECTTSSEEEEEETT------TTEEEEEETTT
T ss_pred             CCcEEEEEcCC----CEEEEEEC--CCCCEEEEEEcCC---CCCcceEEECCCCCEEEEEECC------CCcEEEEeCcc
Confidence            55556665531    25667799  8876543333431   1112233333 4 457777643      35689999998


Q ss_pred             Cee
Q 045821          146 NTW  148 (352)
Q Consensus       146 ~~W  148 (352)
                      ++-
T Consensus        72 ~~~   74 (346)
T d1jmxb_          72 CKN   74 (346)
T ss_dssp             TEE
T ss_pred             Cee
Confidence            864

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.14  E-value=0.31  Score=42.03  Aligned_cols=143  Identities=9%  Similarity=0.001  Sum_probs=71.9

Q ss_pred             CCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE-CC-EEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEE-
Q 045821          133 DATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQ-KIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFV-  209 (352)
Q Consensus       133 ~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~-  209 (352)
                      .....+.++|..+++-...  ++....-+.++.- || .+|+. +.+  ..+.++|..+.+-..+...+........+. 
T Consensus        39 ~d~g~v~v~D~~t~~v~~~--~~~g~~~~~v~fSpDG~~l~~~-s~d--g~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s  113 (432)
T d1qksa2          39 RDAGQIALIDGSTYEIKTV--LDTGYAVHISRLSASGRYLFVI-GRD--GKVNMIDLWMKEPTTVAEIKIGSEARSIETS  113 (432)
T ss_dssp             TTTTEEEEEETTTCCEEEE--EECSSCEEEEEECTTSCEEEEE-ETT--SEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred             cCCCEEEEEECCCCcEEEE--EeCCCCeeEEEECCCCCEEEEE-cCC--CCEEEEEeeCCCceEEEEEecCCCCCCeEEe
Confidence            3456788999998874332  2223333444333 44 56654 433  678899998876443332222211112221 


Q ss_pred             ----ECC-EEEEEccCCCCCCceEEEEEeCCCCceeecCCC---------CCCCCCCcEE--EECCEEEEEecCCCCeEE
Q 045821          210 ----MDG-KIYIRCSASAATSHVCALVYEPSTDSWLHADAN---------MASGWRGPAV--VVDDALYVLDQSSGTKLM  273 (352)
Q Consensus       210 ----~~g-~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~---------~~~~~~~~~~--~~~~~l~~~gg~~~~~v~  273 (352)
                          -|| .||+.+...     ..+..+|..+.+-......         ........++  ..++..+++.......+.
T Consensus       114 ~~~SpDG~~l~vs~~~~-----~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~  188 (432)
T d1qksa2         114 KMEGWEDKYAIAGAYWP-----PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL  188 (432)
T ss_dssp             CSTTCTTTEEEEEEEET-----TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             cccCCCCCEEEEEcCCC-----CeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEE
Confidence                145 467764332     2578889888776543110         0000111122  224444434333334888


Q ss_pred             EEeCCCCceEEc
Q 045821          274 MWQKESREWSPV  285 (352)
Q Consensus       274 ~yd~~~~~W~~~  285 (352)
                      .+|..+..-.++
T Consensus       189 ~~d~~~~~~~~~  200 (432)
T d1qksa2         189 LVDYTDLNNLKT  200 (432)
T ss_dssp             EEETTCSSEEEE
T ss_pred             EEEccCCCcceE
Confidence            888877554333

>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase A (MMP-2), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.85  Score=34.60  Aligned_cols=143  Identities=12%  Similarity=0.088  Sum_probs=75.8

Q ss_pred             EEEEECCEEEEEeCCCCCCCCCCeEEEEECCC----------CeeEecCCCCCcceeeeeEE-ECCEEEEEeCCCCCCce
Q 045821          114 GFEVLGKNAYLLGGCGWSEDATSEVYCYDASM----------NTWTDAAPMSTARCYFPCGV-LNQKIYCIGGLGDTHSW  182 (352)
Q Consensus       114 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t----------~~W~~~~~~~~~r~~~~~~~-~~~~iyv~gG~~~~~~v  182 (352)
                      +++.+++.+|+|-|        ..+|.++...          ..|..+   |.. ...+... .++++|++-|    +.+
T Consensus        17 Av~~~~G~~y~Fkg--------~~~wr~~~~~~~~~~P~~I~~~w~gl---p~~-IdAA~~~~~~~~~yffkg----~~~   80 (200)
T d1gena_          17 GIAQIRGEIFFFKD--------RFIWRTVTPRDKPMGPLLVATFWPEL---PEK-IDAVYEAPQEEKAVFFAG----NEY   80 (200)
T ss_dssp             EEEEETTEEEEEET--------TEEEEESSTTSCCEEEEEGGGTCTTS---CSC-CSEEEEETTTTEEEEEET----TEE
T ss_pred             EEEecCCeEEEEeC--------CEEEEEcCCCCCCCCcEehhhccCCC---CCC-ceEEEEECCCCeEEEecC----ceE
Confidence            56778999999977        2334433222          223222   221 1111111 2678999998    778


Q ss_pred             EEEeCCCCcE---EEecC--CCCcccce-eEEEE--CCEEEEEccCCCCCCceEEEEEeCCCCceee-----cCC-CCCC
Q 045821          183 DVYDPRTNNW---KLHTE--PNIFTEIE-DSFVM--DGKIYIRCSASAATSHVCALVYEPSTDSWLH-----ADA-NMAS  248 (352)
Q Consensus       183 ~~yd~~t~~W---~~~~~--~~~~~~~~-~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~-----~~~-~~~~  248 (352)
                      ++|+-.+-..   +.+..  ++.....- ++...  ++++|++-|..       .++||..+++-..     +.. -+..
T Consensus        81 ~~y~~~~~~~gyPk~i~~~g~p~~~~~iDAA~~~~~~g~~YfFkg~~-------y~ryd~~~~~vd~~yPk~I~~~w~gv  153 (200)
T d1gena_          81 WIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDK-------FWRYNEVKKKMDPGFPKLIADAWNAI  153 (200)
T ss_dssp             EEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEETTE-------EEEEETTTTEECSSCCEEHHHHSSSC
T ss_pred             EEEcCcccccCCCceehhcCCCCCccceeeEEEECCCCeEEEEeCcE-------EEEeccccceeccCcceehhhccCCC
Confidence            9997543211   22221  12111112 33332  68999996543       8999987764211     110 0001


Q ss_pred             CCC-CcEEEE--CCEEEEEecCCCCeEEEEeCCCCce
Q 045821          249 GWR-GPAVVV--DDALYVLDQSSGTKLMMWQKESREW  282 (352)
Q Consensus       249 ~~~-~~~~~~--~~~l~~~gg~~~~~v~~yd~~~~~W  282 (352)
                      +.. -+++..  ++++|++-|.   ..++||..+.+.
T Consensus       154 p~~idAAf~~~~~g~~Yff~g~---~y~r~d~~~~~~  187 (200)
T d1gena_         154 PDNLDAVVDLQGGGHSYFFKGA---YYLKLENQSLKS  187 (200)
T ss_dssp             CSSCSEEEECTTTCEEEEEETT---EEEEEETTEEEE
T ss_pred             CCCccEEEEecCCCEEEEEECC---EEEEEECCceEE
Confidence            111 223333  6889999886   789999765443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=93.90  E-value=1.2  Score=35.76  Aligned_cols=193  Identities=9%  Similarity=-0.020  Sum_probs=99.0

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-CCEEEEEeCCCCCCCCCCeEEEEECCCC
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-GKNAYLLGGCGWSEDATSEVYCYDASMN  146 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~  146 (352)
                      ++.||+....    .-.++.+||  . .....+...+.    .. .+++.- ++.+|+.+-...    .-..+..+....
T Consensus        38 dG~l~vt~~~----~~~I~~i~p--~-g~~~~~~~~~~----~~-~gla~~~dG~l~v~~~~~~----~~~~~~~~~~~~  101 (302)
T d2p4oa1          38 DGTIFVTNHE----VGEIVSITP--D-GNQQIHATVEG----KV-SGLAFTSNGDLVATGWNAD----SIPVVSLVKSDG  101 (302)
T ss_dssp             TSCEEEEETT----TTEEEEECT--T-CCEEEEEECSS----EE-EEEEECTTSCEEEEEECTT----SCEEEEEECTTS
T ss_pred             CCCEEEEeCC----CCEEEEEeC--C-CCEEEEEcCCC----Cc-ceEEEcCCCCeEEEecCCc----eEEEEEeccccc
Confidence            6778887432    336788898  5 44555555542    11 223322 667888753211    112233344444


Q ss_pred             eeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEec-C--CC-----C-cccceeEEEECCEEEE
Q 045821          147 TWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHT-E--PN-----I-FTEIEDSFVMDGKIYI  216 (352)
Q Consensus       147 ~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~-~--~~-----~-~~~~~~~~~~~g~iyv  216 (352)
                      +-..+...+........+.. ++++|+.....  ..++.+|+.+..=.... .  ..     . ..........++.+|+
T Consensus       102 ~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~  179 (302)
T d2p4oa1         102 TVETLLTLPDAIFLNGITPLSDTQYLTADSYR--GAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYV  179 (302)
T ss_dssp             CEEEEEECTTCSCEEEEEESSSSEEEEEETTT--TEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEE
T ss_pred             ceeeccccCCccccceeEEccCCCEEeecccc--ccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceee
Confidence            44444444433333344433 67888764433  67888888876422211 1  00     0 1111233455778888


Q ss_pred             EccCCCCCCceEEEEEeCCCCceeecCCC--CCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceEE
Q 045821          217 RCSASAATSHVCALVYEPSTDSWLHADAN--MASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSP  284 (352)
Q Consensus       217 ~GG~~~~~~~~~i~~yd~~~~~W~~~~~~--~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~  284 (352)
                      .....     ..+++++.....-......  ....-.+.++..+|.||+.....+ .|.+|+++.+.-..
T Consensus       180 ~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~-~V~~i~p~G~~~~~  243 (302)
T d2p4oa1         180 SNTEK-----MLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYN-SVVRIAPDRSTTII  243 (302)
T ss_dssp             EETTT-----TEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTC-CEEEECTTCCEEEE
T ss_pred             ecCCC-----CeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCC-cEEEECCCCCEEEE
Confidence            74322     3688888765432111100  001112233445778888765444 89999998765443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=93.64  E-value=1.1  Score=38.26  Aligned_cols=218  Identities=10%  Similarity=0.007  Sum_probs=102.7

Q ss_pred             hhhhhhhcccccChhhHHHHhhCCCC-CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCCcceEEEEE-C
Q 045821           42 KCVSSRWRGLLHSEEWCAYRRKHNLD-ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVL-G  119 (352)
Q Consensus        42 ~~v~k~W~~l~~s~~~~~~~~~~~~~-~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~  119 (352)
                      .-+...|.-+.+...++... ..... .+.+++.-    ...-.+.++|.  .++.-...-+..     ..-+.++.. +
T Consensus         5 ~~~~~~w~v~~~~~~~~~~~-~~~~~~~~~~~v~~----~d~g~v~v~D~--~t~~v~~~~~~g-----~~~~~v~fSpD   72 (432)
T d1qksa2           5 KEMRESWKVHVAPEDRPTQQ-MNDWDLENLFSVTL----RDAGQIALIDG--STYEIKTVLDTG-----YAVHISRLSAS   72 (432)
T ss_dssp             HHHHHHCEESSCGGGSCSSC-CSCCCGGGEEEEEE----TTTTEEEEEET--TTCCEEEEEECS-----SCEEEEEECTT
T ss_pred             hHhhhceeEecccccCCCce-eecCCCCcEEEEEE----cCCCEEEEEEC--CCCcEEEEEeCC-----CCeeEEEECCC
Confidence            34556787775433332211 12222 34444441    12234555688  777654433322     122333333 3


Q ss_pred             C-EEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEE---E--CC-EEEEEeCCCCCCceEEEeCCCCcE
Q 045821          120 K-NAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGV---L--NQ-KIYCIGGLGDTHSWDVYDPRTNNW  192 (352)
Q Consensus       120 ~-~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~---~--~~-~iyv~gG~~~~~~v~~yd~~t~~W  192 (352)
                      + .+|+.+ .      ...+.++|..+.+-..+..++........+.   +  +| .+|+.+..+  ..+.++|..+.+-
T Consensus        73 G~~l~~~s-~------dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~--~~v~i~d~~t~~~  143 (432)
T d1qksa2          73 GRYLFVIG-R------DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP--PQYVIMDGETLEP  143 (432)
T ss_dssp             SCEEEEEE-T------TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEET--TEEEEEETTTCCE
T ss_pred             CCEEEEEc-C------CCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCC--CeEEEEeCccccc
Confidence            4 566543 2      2468889988776443333332211111111   1  34 577766544  6788999998876


Q ss_pred             EEecCCCC--------cccc-eeEE--EECC-EEEEEccCCCCCCceEEEEEeCCCCceeecCCCC-CCCCCCcEEEECC
Q 045821          193 KLHTEPNI--------FTEI-EDSF--VMDG-KIYIRCSASAATSHVCALVYEPSTDSWLHADANM-ASGWRGPAVVVDD  259 (352)
Q Consensus       193 ~~~~~~~~--------~~~~-~~~~--~~~g-~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~-~~~~~~~~~~~~~  259 (352)
                      ........        .... ..++  ..+| .+++....     ...+..+|..+.+-..+.... ...-+..++.-++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~-----~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg  218 (432)
T d1qksa2         144 KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE-----TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSH  218 (432)
T ss_dssp             EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT-----TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTS
T ss_pred             eeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc-----CCeEEEEEccCCCcceEEEEcccCccccceECCCC
Confidence            54431110        0001 1112  2234 34443211     125677777655433221111 1111122233466


Q ss_pred             EEEEEecCCCCeEEEEeCCCCceEEc
Q 045821          260 ALYVLDQSSGTKLMMWQKESREWSPV  285 (352)
Q Consensus       260 ~l~~~gg~~~~~v~~yd~~~~~W~~~  285 (352)
                      +.++++...++.+...|..+......
T Consensus       219 ~~~~va~~~~~~v~v~d~~~~~~~~~  244 (432)
T d1qksa2         219 RYFITAANARNKLVVIDTKEGKLVAI  244 (432)
T ss_dssp             CEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             CEEEEeccccceEEEeecccceEEEE
Confidence            65555544445888899888776544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=92.68  E-value=2.1  Score=34.75  Aligned_cols=191  Identities=8%  Similarity=0.039  Sum_probs=88.9

Q ss_pred             CCEEEEEEecCCCCceeEEEecCCCCCCCeeEeccCCCcccCC-cceEEEEECCEEEEEe--CCCC-------CCCCCCe
Q 045821           68 ETWIYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRR-KGMGFEVLGKNAYLLG--GCGW-------SEDATSE  137 (352)
Q Consensus        68 ~~~l~~~gg~~~~~~~~~~~~d~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~iyv~G--G~~~-------~~~~~~~  137 (352)
                      ++.+|+..+.     ..+..+|+  .+.....+.........+ .+-....-++.+|+..  +...       .......
T Consensus        82 g~~l~vad~~-----~~i~~~~~--~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~  154 (314)
T d1pjxa_          82 ANQLFVADMR-----LGLLVVQT--DGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGS  154 (314)
T ss_dssp             SSEEEEEETT-----TEEEEEET--TSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred             CCEEEEEECC-----CeEEEEeC--CCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCce
Confidence            4566765432     23566787  555433332222100011 1112223367888863  1110       1123446


Q ss_pred             EEEEECCCCeeEec-CCCCCcceeeeeEEECC----EEEEEeCCCCCCceEEEeCCCCc---EEEe-cCCCCccc-ce-e
Q 045821          138 VYCYDASMNTWTDA-APMSTARCYFPCGVLNQ----KIYCIGGLGDTHSWDVYDPRTNN---WKLH-TEPNIFTE-IE-D  206 (352)
Q Consensus       138 ~~~~d~~t~~W~~~-~~~~~~r~~~~~~~~~~----~iyv~gG~~~~~~v~~yd~~t~~---W~~~-~~~~~~~~-~~-~  206 (352)
                      ++++++... ...+ ..+..|. .-+...-++    .+|+.....  ..+++||...+.   ++++ ...+.... .. .
T Consensus       155 v~~~~~dg~-~~~~~~~~~~pN-Gi~~~~d~d~~~~~lyv~d~~~--~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdG  230 (314)
T d1pjxa_         155 IYCFTTDGQ-MIQVDTAFQFPN-GIAVRHMNDGRPYQLIVAETPT--KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG  230 (314)
T ss_dssp             EEEECTTSC-EEEEEEEESSEE-EEEEEECTTSCEEEEEEEETTT--TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred             EEEEeecCc-eeEeeCCcceee-eeEECCCCCcceeEEEEEeecc--cceEEeeccCccccceeeEEEEcccccccccee
Confidence            888887543 3332 2222221 111111112    577765433  678888765432   2221 12222111 11 2


Q ss_pred             E-EEECCEEEEEccCCCCCCceEEEEEeCCCCcee-ecCCCCCCCCCCcEEEEC--C-EEEEEecCCCCeEEEEeCC
Q 045821          207 S-FVMDGKIYIRCSASAATSHVCALVYEPSTDSWL-HADANMASGWRGPAVVVD--D-ALYVLDQSSGTKLMMWQKE  278 (352)
Q Consensus       207 ~-~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~--~-~l~~~gg~~~~~v~~yd~~  278 (352)
                      . +--+|+|||..-..     ..|.+||+.+.+-. .+..+.   .....++++  + .||+.....+ .|++++..
T Consensus       231 iavD~~GnlyVa~~~~-----g~I~~~dp~~g~~~~~i~~p~---~~~t~~afg~d~~~lyVt~~~~g-~i~~~~~~  298 (314)
T d1pjxa_         231 MDFDEDNNLLVANWGS-----SHIEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENN-AVWKFEWQ  298 (314)
T ss_dssp             EEEBTTCCEEEEEETT-----TEEEEECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTT-EEEEEECS
T ss_pred             eEEecCCcEEEEEcCC-----CEEEEEeCCCCEEEEEEECCC---CCEEEEEEeCCCCEEEEEECCCC-cEEEEECC
Confidence            2 22478999974211     36999999876543 333211   112234442  2 5888876554 88888764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=92.31  E-value=1.8  Score=38.59  Aligned_cols=116  Identities=18%  Similarity=0.176  Sum_probs=72.5

Q ss_pred             EEECCEEEEEeCCCCCCCCCCeEEEEECCCCe--eEecCCCCC--------cceeeeeEEECCEEEEEeCCCCCCceEEE
Q 045821          116 EVLGKNAYLLGGCGWSEDATSEVYCYDASMNT--WTDAAPMST--------ARCYFPCGVLNQKIYCIGGLGDTHSWDVY  185 (352)
Q Consensus       116 ~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~--------~r~~~~~~~~~~~iyv~gG~~~~~~v~~y  185 (352)
                      ++.++.||+...       ...++.+|..|++  |+.-+..+.        .......+..++++|+....   ..++.+
T Consensus        74 iv~~g~vyv~t~-------~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~~---g~l~al  143 (573)
T d1kb0a2          74 VVVDGIMYVSAS-------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWD---GRLIAL  143 (573)
T ss_dssp             EEETTEEEEECG-------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTT---SEEEEE
T ss_pred             EEECCEEEEECC-------CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEecc---cceeee
Confidence            567999998743       4668999999886  876443321        11223466678888876532   568889


Q ss_pred             eCCCCc--EEEecC-CCCc--ccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCc--eee
Q 045821          186 DPRTNN--WKLHTE-PNIF--TEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDS--WLH  241 (352)
Q Consensus       186 d~~t~~--W~~~~~-~~~~--~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~--W~~  241 (352)
                      |..|.+  |+.-.. ....  .......++++.+++-+..........|..||..+++  |+.
T Consensus       144 da~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  206 (573)
T d1kb0a2         144 DAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (573)
T ss_dssp             ETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             ccccccceecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeee
Confidence            998875  876431 1111  1122346778988874322222233479999998875  763

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=92.11  E-value=1.3  Score=39.44  Aligned_cols=118  Identities=17%  Similarity=0.170  Sum_probs=74.2

Q ss_pred             EEEEECCEEEEEeCCCCCCCCCCeEEEEECCCCe--eEecCCCCC--------cceeeeeEEECCEEEEEeCCCCCCceE
Q 045821          114 GFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNT--WTDAAPMST--------ARCYFPCGVLNQKIYCIGGLGDTHSWD  183 (352)
Q Consensus       114 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~--------~r~~~~~~~~~~~iyv~gG~~~~~~v~  183 (352)
                      +=++.++.||+...       ...++.+|..|++  |+.-+..+.        .......+..+++||+....   ..+.
T Consensus        61 tPiv~~g~vyv~t~-------~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---g~l~  130 (560)
T d1kv9a2          61 TPLFHDGVIYTSMS-------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLD---GRLI  130 (560)
T ss_dssp             CCEEETTEEEEEEG-------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTT---SEEE
T ss_pred             CCEEECCEEEEECC-------CCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCC---CEEE
Confidence            34678999998754       4678999999886  885443221        11223456668888876542   5688


Q ss_pred             EEeCCCCc--EEEec-CCCCcc-cceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCc--eee
Q 045821          184 VYDPRTNN--WKLHT-EPNIFT-EIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDS--WLH  241 (352)
Q Consensus       184 ~yd~~t~~--W~~~~-~~~~~~-~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~--W~~  241 (352)
                      .+|..|.+  |+.-. ...... ......+.++.+++-+..........+..||..+.+  |+.
T Consensus       131 Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  194 (560)
T d1kv9a2         131 ALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF  194 (560)
T ss_dssp             EEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             EEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeee
Confidence            89998874  76643 222222 222456778888875333333333478999998875  754

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=91.98  E-value=1  Score=36.18  Aligned_cols=155  Identities=10%  Similarity=0.050  Sum_probs=76.3

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE-CC-EEEEEeCCCCCCceEEEeCCCCcEEEec
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQ-KIYCIGGLGDTHSWDVYDPRTNNWKLHT  196 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~gG~~~~~~v~~yd~~t~~W~~~~  196 (352)
                      +++.++.++.      .+.+.+||..+++-...-.++.......++.. ++ .+|+.+..+  ..+.+||..+.+=....
T Consensus         7 ~~~~l~~~~~------~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~--~~v~~~d~~t~~~~~~~   78 (346)
T d1jmxb_           7 GHEYMIVTNY------PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY--GDIYGIDLDTCKNTFHA   78 (346)
T ss_dssp             TCEEEEEEET------TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTT--TEEEEEETTTTEEEEEE
T ss_pred             CCcEEEEEcC------CCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCC--CcEEEEeCccCeeeeee
Confidence            5566666653      35789999999975432223332222233333 44 678877654  67899999987422211


Q ss_pred             CCCCccc----c-eeE-EEECC-EEEEEccCCCC------CCceEEEEEeCCCCceeec-CCCC-CCCCCCcEEEECCEE
Q 045821          197 EPNIFTE----I-EDS-FVMDG-KIYIRCSASAA------TSHVCALVYEPSTDSWLHA-DANM-ASGWRGPAVVVDDAL  261 (352)
Q Consensus       197 ~~~~~~~----~-~~~-~~~~g-~iyv~GG~~~~------~~~~~i~~yd~~~~~W~~~-~~~~-~~~~~~~~~~~~~~l  261 (352)
                      .......    . ... +.-+| .+|+.+.....      .....+..+|..+++-... .... +..........++++
T Consensus        79 ~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (346)
T d1jmxb_          79 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSL  158 (346)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCE
T ss_pred             cccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEE
Confidence            1111111    1 112 22244 56666321110      0111456666655432221 1101 111111223346677


Q ss_pred             EEEecCCCCeEEEEeCCCCceEEc
Q 045821          262 YVLDQSSGTKLMMWQKESREWSPV  285 (352)
Q Consensus       262 ~~~gg~~~~~v~~yd~~~~~W~~~  285 (352)
                      ++.++    .+..+|..+.+....
T Consensus       159 ~~~~~----~~~~~~~~~~~~~~~  178 (346)
T d1jmxb_         159 YVAGP----DIYKMDVKTGKYTVA  178 (346)
T ss_dssp             EEESS----SEEEECTTTCCEEEE
T ss_pred             EEeCC----cceEEEccCCCEEEE
Confidence            77654    678888887776543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.74  E-value=2.3  Score=33.12  Aligned_cols=64  Identities=9%  Similarity=-0.013  Sum_probs=33.4

Q ss_pred             ECCEEEEEecCCCCeEEEEeCCCCceEEccCCCCCcCCCCceEE-EeCCEEEEEcCCc-eEEEEEcCCcc
Q 045821          257 VDDALYVLDQSSGTKLMMWQKESREWSPVGRLSTLLTRPPCKLV-AIGKTIFVIGKGC-SAVVIDVGNIG  324 (352)
Q Consensus       257 ~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~i~v~gG~~-~~~~~d~~~~~  324 (352)
                      ..+.+++.|+.++ .+..||..+++....-....   ....+++ ..++++++.|+.+ .+.+||.++..
T Consensus       215 ~~~~~~~~~~~d~-~i~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  280 (317)
T d1vyhc1         215 KPGPFLLSGSRDK-TIKMWDVSTGMCLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR  280 (317)
T ss_dssp             --CCEEEEEETTS-EEEEEETTTTEEEEEEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred             cCCceeEeccCCC-EEEEEECCCCcEEEEEeCCC---CCEEEEEECCCCCEEEEEECCCeEEEEECCCCc
Confidence            3455666666555 89999998876432211110   1111222 2355555556554 46688887654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.46  E-value=2.4  Score=32.92  Aligned_cols=150  Identities=9%  Similarity=0.022  Sum_probs=68.1

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecC
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTE  197 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~  197 (352)
                      ++.+++.|+.+      ..+.+||..+++....-....... .+++.. ++.+++.++..  ..+..++...........
T Consensus        28 ~~~~l~s~s~D------g~i~iWd~~~~~~~~~~~~h~~~V-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   98 (317)
T d1vyhc1          28 VFSVMVSASED------ATIKVWDYETGDFERTLKGHTDSV-QDISFDHSGKLLASCSAD--MTIKLWDFQGFECIRTMH   98 (317)
T ss_dssp             SSSEEEEEESS------SCEEEEETTTCCCCEEECCCSSCE-EEEEECTTSSEEEEEETT--SCCCEEETTSSCEEECCC
T ss_pred             CCCEEEEEeCC------CeEEEEECCCCCEEEEEeCCCCcE-EEEeeecccccccccccc--cccccccccccccccccc
Confidence            45566666543      457888988765322111111111 111222 34444444433  344556665555443321


Q ss_pred             CCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeC
Q 045821          198 PNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQK  277 (352)
Q Consensus       198 ~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~  277 (352)
                      .............++...+.++.+.     .+..+|..+.+....-..............++.+++.|+.++ .+..||.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~d~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~v~~~~~  172 (317)
T d1vyhc1          99 GHDHNVSSVSIMPNGDHIVSASRDK-----TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ-TVRVWVV  172 (317)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTS-----EEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS-CEEEEET
T ss_pred             cccccceeeeccCCCceEEeeccCc-----ceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCC-eEEEEee
Confidence            1111111122223455555544432     466778777655432111111101111122566666666655 7888887


Q ss_pred             CCCceE
Q 045821          278 ESREWS  283 (352)
Q Consensus       278 ~~~~W~  283 (352)
                      .+....
T Consensus       173 ~~~~~~  178 (317)
T d1vyhc1         173 ATKECK  178 (317)
T ss_dssp             TTCCEE
T ss_pred             ccceee
Confidence            766543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.36  E-value=2.9  Score=33.61  Aligned_cols=143  Identities=10%  Similarity=0.070  Sum_probs=68.9

Q ss_pred             EEEEEeCCCCCCCCCCeEEEEECCCCeeE-ecCCCCCcceeeeeEEE---CCEEEEEeCCCCCCceEEEeCCCCcEEEe-
Q 045821          121 NAYLLGGCGWSEDATSEVYCYDASMNTWT-DAAPMSTARCYFPCGVL---NQKIYCIGGLGDTHSWDVYDPRTNNWKLH-  195 (352)
Q Consensus       121 ~iyv~GG~~~~~~~~~~~~~~d~~t~~W~-~~~~~~~~r~~~~~~~~---~~~iyv~gG~~~~~~v~~yd~~t~~W~~~-  195 (352)
                      .+++.+|.+      ..+..||..+.+-. ...........-..+.+   .+.+++.|+.+  ..+.+||..+++.... 
T Consensus       173 ~~~~~~~~d------~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d--~~i~iwd~~~~~~~~~l  244 (325)
T d1pgua1         173 MRSMTVGDD------GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD--RKISCFDGKSGEFLKYI  244 (325)
T ss_dssp             CEEEEEETT------TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT--CCEEEEETTTCCEEEEC
T ss_pred             ceEEEeecc------cccccccccccccceecccccCCCCccEEeeeccccceeccccccc--cceeeeeeccccccccc
Confidence            345555532      35677887655432 22222111111122223   35677777765  6789999988865332 


Q ss_pred             cCCCCcccce--eEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCC--cEEE-ECCEEEEEecCCCC
Q 045821          196 TEPNIFTEIE--DSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRG--PAVV-VDDALYVLDQSSGT  270 (352)
Q Consensus       196 ~~~~~~~~~~--~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~--~~~~-~~~~l~~~gg~~~~  270 (352)
                      ..........  +....+++.++.|+.++     .+..||..+++-...-.........  .++. .++..++.|+.++ 
T Consensus       245 ~~~~~~v~~~~~s~~~~dg~~l~s~s~D~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg-  318 (325)
T d1pgua1         245 EDDQEPVQGGIFALSWLDSQKFATVGADA-----TIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG-  318 (325)
T ss_dssp             CBTTBCCCSCEEEEEESSSSEEEEEETTS-----EEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTS-
T ss_pred             cccccccccceeeeeccCCCEEEEEeCCC-----eEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCC-
Confidence            2111111111  12224677777766553     5778898877643211101111111  1222 2333445566555 


Q ss_pred             eEEEEeC
Q 045821          271 KLMMWQK  277 (352)
Q Consensus       271 ~v~~yd~  277 (352)
                      .+.+||+
T Consensus       319 ~i~vwdl  325 (325)
T d1pgua1         319 TLNFYEL  325 (325)
T ss_dssp             CEEEEET
T ss_pred             EEEEEEC
Confidence            7888874

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.34  E-value=2.4  Score=32.58  Aligned_cols=69  Identities=16%  Similarity=0.136  Sum_probs=42.5

Q ss_pred             EECCEEEEEeCCCCCCceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeec
Q 045821          165 VLNQKIYCIGGLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHA  242 (352)
Q Consensus       165 ~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~  242 (352)
                      .++++..+.|+.+  ..+.+||..+.+-...  +........++..++++.+.|+.++     .+..++..++.....
T Consensus        22 ~~d~~~l~sgs~D--g~i~vWd~~~~~~~~~--l~~H~~~V~~v~~~~~~l~s~s~D~-----~i~~~~~~~~~~~~~   90 (293)
T d1p22a2          22 QYDDQKIVSGLRD--NTIKIWDKNTLECKRI--LTGHTGSVLCLQYDERVIITGSSDS-----TVRVWDVNTGEMLNT   90 (293)
T ss_dssp             ECCSSEEEEEESS--SCEEEEESSSCCEEEE--ECCCSSCEEEEECCSSEEEEEETTS-----CEEEEESSSCCEEEE
T ss_pred             EEcCCEEEEEeCC--CeEEEEECCCCcEEEE--EecCCCCEeeeecccceeecccccc-----ccccccccccccccc
Confidence            3467777777766  6788999988765433  2221222234556888777776653     467777776665543

>d1hxna_ b.66.1.1 (A:) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=91.04  E-value=1.3  Score=33.78  Aligned_cols=139  Identities=12%  Similarity=0.194  Sum_probs=72.5

Q ss_pred             ECCEEEEEeCCCCCCceEEEeCCCCcEE--EecC-CCC-cccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCC-ce-
Q 045821          166 LNQKIYCIGGLGDTHSWDVYDPRTNNWK--LHTE-PNI-FTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTD-SW-  239 (352)
Q Consensus       166 ~~~~iyv~gG~~~~~~v~~yd~~t~~W~--~~~~-~~~-~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~-~W-  239 (352)
                      .+|.+|++-|    ..+++++.....|.  .|.. .+. +..--++...++++|++-|..       .++|...+. += 
T Consensus        18 ~~G~~y~Fkg----~~~wr~~~~~~~~~p~~I~~~W~~lp~~IDAA~~~~~~~yfFkG~~-------y~~y~~~~~~~~~   86 (210)
T d1hxna_          18 NHGATYVFSG----SHYWRLDTNRDGWHSWPIAHQWPQGPSTVDAAFSWEDKLYLIQDTK-------VYVFLTKGGYTLV   86 (210)
T ss_dssp             TTSCEEEEET----TEEEESSSSSCTTCCEEGGGTCTTSCSSCSEEEEETTEEEEEETTE-------EEEEECSSSCEEC
T ss_pred             CCCCEEEEEC----CEEEEEcCCCCCCCcccHHHhcCCCCcccceEEEeCCeEEEEecCE-------EEEEEcCCCcCcc
Confidence            4789999988    56677766555442  2221 111 122235566789999996543       778854321 11 


Q ss_pred             ----eec----CCCCCCCCCCc-EE-E--ECCEEEEEecCCCCeEEEEeCCCC---ceEEccCCCCCc--------CCCC
Q 045821          240 ----LHA----DANMASGWRGP-AV-V--VDDALYVLDQSSGTKLMMWQKESR---EWSPVGRLSTLL--------TRPP  296 (352)
Q Consensus       240 ----~~~----~~~~~~~~~~~-~~-~--~~~~l~~~gg~~~~~v~~yd~~~~---~W~~~~~~~~~~--------~~~~  296 (352)
                          +.+    +-++....... ++ .  .++++|++-|.   ..++||..++   .+...+..+...        ....
T Consensus        87 ~GyPk~i~~~~g~p~~~~~~~IDAA~~~~~~gk~yffkG~---~y~ryd~~~~~~~~~~~~p~~~~~vDaa~~~~~~~~~  163 (210)
T d1hxna_          87 NGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGR---RLWWLDLKSGAQATWTELPWPHEKVDGALCMEKPLGP  163 (210)
T ss_dssp             TTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEETT---EEEEEEGGGGGGCCCEEECCSCSCCSEEEEESSCSSS
T ss_pred             CCCCcChhhccCCCCCCCCCcEeEEEEeCCCCEEEEEECC---EEEEEcCCcCCccccccCCCCCcccceeeeecCCCCc
Confidence                011    11111111111 33 2  26899999886   8999998763   344433222100        0011


Q ss_pred             ceEEEeCCEEEEEcCCceEEEEE
Q 045821          297 CKLVAIGKTIFVIGKGCSAVVID  319 (352)
Q Consensus       297 ~~~~~~~~~i~v~gG~~~~~~~d  319 (352)
                      .++...++.+|+|-|. ..+-||
T Consensus       164 ~~~~~~~~~~YfFkG~-~y~r~~  185 (210)
T d1hxna_         164 NSCSTSGPNLYLIHGP-NLYCYR  185 (210)
T ss_dssp             CCSCSSSCEEEEEETT-EEEEES
T ss_pred             cceeecCCcEEEEECC-EEEEEe
Confidence            1122235689999876 345565

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=90.50  E-value=3.4  Score=32.94  Aligned_cols=148  Identities=10%  Similarity=-0.063  Sum_probs=76.7

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEE-CCEEEEEeCCCCCCceEEEeCCCCcEEEecC
Q 045821          119 GKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL-NQKIYCIGGLGDTHSWDVYDPRTNNWKLHTE  197 (352)
Q Consensus       119 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~v~~yd~~t~~W~~~~~  197 (352)
                      ++.||+....      ...++++|+.... ..+...+.  ...+++.- ++++|+.+-..........+....+-+.+..
T Consensus        38 dG~l~vt~~~------~~~I~~i~p~g~~-~~~~~~~~--~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~  108 (302)
T d2p4oa1          38 DGTIFVTNHE------VGEIVSITPDGNQ-QIHATVEG--KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLT  108 (302)
T ss_dssp             TSCEEEEETT------TTEEEEECTTCCE-EEEEECSS--EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             CCCEEEEeCC------CCEEEEEeCCCCE-EEEEcCCC--CcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccc
Confidence            6788887542      4578999988653 33333332  12223322 6788887643321222333444444455544


Q ss_pred             CCCcccceeEEE-ECCEEEEEccCCCCCCceEEEEEeCCCCceeec---CCCC----CCCCCCc-E-EEECCEEEEEecC
Q 045821          198 PNIFTEIEDSFV-MDGKIYIRCSASAATSHVCALVYEPSTDSWLHA---DANM----ASGWRGP-A-VVVDDALYVLDQS  267 (352)
Q Consensus       198 ~~~~~~~~~~~~-~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~---~~~~----~~~~~~~-~-~~~~~~l~~~gg~  267 (352)
                      .+........+. -+|++|+.....     ..++.+|+.+..=...   +...    ....... . ...++.+|+....
T Consensus       109 ~~~~~~~n~i~~~~~g~~~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~  183 (302)
T d2p4oa1         109 LPDAIFLNGITPLSDTQYLTADSYR-----GAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTE  183 (302)
T ss_dssp             CTTCSCEEEEEESSSSEEEEEETTT-----TEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETT
T ss_pred             cCCccccceeEEccCCCEEeecccc-----ccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCC
Confidence            444333333333 478888863222     3678888876642211   1100    0111111 1 3457777777655


Q ss_pred             CCCeEEEEeCCCCc
Q 045821          268 SGTKLMMWQKESRE  281 (352)
Q Consensus       268 ~~~~v~~yd~~~~~  281 (352)
                      .+ .++++|.....
T Consensus       184 ~~-~i~~~~~~~~~  196 (302)
T d2p4oa1         184 KM-LLLRIPVDSTD  196 (302)
T ss_dssp             TT-EEEEEEBCTTS
T ss_pred             CC-eEEeccccccc
Confidence            44 89999887643

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=89.64  E-value=4.3  Score=35.89  Aligned_cols=111  Identities=14%  Similarity=0.170  Sum_probs=64.8

Q ss_pred             eEEEECCEEEEEccCCCCCCceEEEEEeCCCCc--eeecCCC--------CCCCCCCcEEEECCEEEEEecCCCCeEEEE
Q 045821          206 DSFVMDGKIYIRCSASAATSHVCALVYEPSTDS--WLHADAN--------MASGWRGPAVVVDDALYVLDQSSGTKLMMW  275 (352)
Q Consensus       206 ~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~--W~~~~~~--------~~~~~~~~~~~~~~~l~~~gg~~~~~v~~y  275 (352)
                      .-++.+|+||+....      ..++++|..+++  |+.-+..        ............++++|+.... + .++.+
T Consensus        61 tPiv~~g~vyv~t~~------~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g-~l~Al  132 (560)
T d1kv9a2          61 TPLFHDGVIYTSMSW------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLD-G-RLIAL  132 (560)
T ss_dssp             CCEEETTEEEEEEGG------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTT-S-EEEEE
T ss_pred             CCEEECCEEEEECCC------CeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCC-C-EEEEE
Confidence            447889999987432      368899988764  8753221        1111122235667887766432 2 89999


Q ss_pred             eCCCCc--eEEccCCCCCcCCCCceEEEeCCEEEEEcCCc------eEEEEEcCCcc
Q 045821          276 QKESRE--WSPVGRLSTLLTRPPCKLVAIGKTIFVIGKGC------SAVVIDVGNIG  324 (352)
Q Consensus       276 d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~------~~~~~d~~~~~  324 (352)
                      |.++++  |+....-+.........-.+.++.+++-+...      .+.-||+++..
T Consensus       133 da~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~  189 (560)
T d1kv9a2         133 DAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGK  189 (560)
T ss_dssp             ETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred             ECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCce
Confidence            988764  76543322222233345556788887743221      25568887655

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.54  E-value=4.2  Score=36.02  Aligned_cols=117  Identities=15%  Similarity=0.271  Sum_probs=70.4

Q ss_pred             EEECCEEEEEeCCCCCCCCCCeEEEEEC-CCCe--eEecCCCCCcc--------eeeeeEEECCEEEEEeCCCCCCceEE
Q 045821          116 EVLGKNAYLLGGCGWSEDATSEVYCYDA-SMNT--WTDAAPMSTAR--------CYFPCGVLNQKIYCIGGLGDTHSWDV  184 (352)
Q Consensus       116 ~~~~~~iyv~GG~~~~~~~~~~~~~~d~-~t~~--W~~~~~~~~~r--------~~~~~~~~~~~iyv~gG~~~~~~v~~  184 (352)
                      .+.++.+|+..+.      ...++.+|. .|++  |+.-+..+...        ..-..+..+++||+....   ..++.
T Consensus        59 ~v~~g~vyv~t~~------~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~~---g~l~a  129 (571)
T d2ad6a1          59 LVIGDMMYVHSAF------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQAN---GHLLA  129 (571)
T ss_dssp             EEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTT---SEEEE
T ss_pred             EEECCEEEEecCC------CCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEeCC---CcEEe
Confidence            5679999998542      245788886 4553  87544332211        112356678998875432   56889


Q ss_pred             EeCCCCc--EEEe-cCCCCc-ccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCc--eee
Q 045821          185 YDPRTNN--WKLH-TEPNIF-TEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDS--WLH  241 (352)
Q Consensus       185 yd~~t~~--W~~~-~~~~~~-~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~--W~~  241 (352)
                      .|.+|.+  |+.- .+.... .....-+++++.+|+-+..........+.+||..+.+  |+.
T Consensus       130 lda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  192 (571)
T d2ad6a1         130 LDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             EETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             eehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEE
Confidence            9999885  7652 221111 1222347889999886443332333479999988764  753

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=89.53  E-value=4.1  Score=36.09  Aligned_cols=115  Identities=15%  Similarity=0.231  Sum_probs=70.3

Q ss_pred             eeeEEECCEEEEEeCCCCCCceEEEeCCCCc--EEEecCCCCc--------ccceeEEEECCEEEEEccCCCCCCceEEE
Q 045821          161 FPCGVLNQKIYCIGGLGDTHSWDVYDPRTNN--WKLHTEPNIF--------TEIEDSFVMDGKIYIRCSASAATSHVCAL  230 (352)
Q Consensus       161 ~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~--W~~~~~~~~~--------~~~~~~~~~~g~iyv~GG~~~~~~~~~i~  230 (352)
                      ...++.++.||+....   ..++.+|.+|.+  |+.-+..+..        ......+..++++|+....      ..++
T Consensus        71 stPiv~~g~vyv~t~~---~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~~------g~l~  141 (573)
T d1kb0a2          71 ATPVVVDGIMYVSASW---SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWD------GRLI  141 (573)
T ss_dssp             CCCEEETTEEEEECGG---GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTT------SEEE
T ss_pred             ECCEEECCEEEEECCC---CeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEecc------ccee
Confidence            4456789999997653   568999999874  8764322211        1122456778898886321      2588


Q ss_pred             EEeCCCCc--eeecCCCCCC---CCCCcEEEECCEEEEEecCC----CCeEEEEeCCCCc--eEE
Q 045821          231 VYEPSTDS--WLHADANMAS---GWRGPAVVVDDALYVLDQSS----GTKLMMWQKESRE--WSP  284 (352)
Q Consensus       231 ~yd~~~~~--W~~~~~~~~~---~~~~~~~~~~~~l~~~gg~~----~~~v~~yd~~~~~--W~~  284 (352)
                      ++|..+.+  |+.-......   ......++.++.+++-+...    ...|..||..+++  |+.
T Consensus       142 alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  206 (573)
T d1kb0a2         142 ALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (573)
T ss_dssp             EEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             eeccccccceecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeee
Confidence            88887765  8754321111   12333467788877643211    1378999998876  753

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.23  E-value=4.6  Score=35.77  Aligned_cols=116  Identities=13%  Similarity=0.159  Sum_probs=71.0

Q ss_pred             eeeEEECCEEEEEeCCCCCCceEEEeCC-CC--cEEEecCCCCcccc--------eeEEEECCEEEEEccCCCCCCceEE
Q 045821          161 FPCGVLNQKIYCIGGLGDTHSWDVYDPR-TN--NWKLHTEPNIFTEI--------EDSFVMDGKIYIRCSASAATSHVCA  229 (352)
Q Consensus       161 ~~~~~~~~~iyv~gG~~~~~~v~~yd~~-t~--~W~~~~~~~~~~~~--------~~~~~~~g~iyv~GG~~~~~~~~~i  229 (352)
                      ....++++.+|+..+..  ..++..|.. |.  .|+.-+..+.....        ...+..+++||+.. ..     ..+
T Consensus        56 ~tP~v~~g~vyv~t~~~--~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~-~~-----g~l  127 (571)
T d2ad6a1          56 GAPLVIGDMMYVHSAFP--NNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQ-AN-----GHL  127 (571)
T ss_dssp             SCCEEETTEEEEECSTT--TCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEEC-TT-----SEE
T ss_pred             cCCEEECCEEEEecCCC--CeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEe-CC-----CcE
Confidence            45667899999987533  568888863 54  58764432222111        23467789999862 22     268


Q ss_pred             EEEeCCCCc--eee-cCCC-CCCCCCCcEEEECCEEEEEecCC----CCeEEEEeCCCCc--eEE
Q 045821          230 LVYEPSTDS--WLH-ADAN-MASGWRGPAVVVDDALYVLDQSS----GTKLMMWQKESRE--WSP  284 (352)
Q Consensus       230 ~~yd~~~~~--W~~-~~~~-~~~~~~~~~~~~~~~l~~~gg~~----~~~v~~yd~~~~~--W~~  284 (352)
                      ++.|..+.+  |+. +... .......+.++.++.+|+-....    ...|..||..+++  |+.
T Consensus       128 ~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  192 (571)
T d2ad6a1         128 LALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             EEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             EeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEE
Confidence            889998875  764 3221 22223334477889988754311    1378999988765  753

>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase A (MMP-2), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.34  E-value=3.9  Score=30.66  Aligned_cols=145  Identities=8%  Similarity=0.053  Sum_probs=76.2

Q ss_pred             eeeEEECCEEEEEeCCCCCCceEEEeCCCCcEE---EecC-CCCc-ccceeEEEE--CCEEEEEccCCCCCCceEEEEEe
Q 045821          161 FPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWK---LHTE-PNIF-TEIEDSFVM--DGKIYIRCSASAATSHVCALVYE  233 (352)
Q Consensus       161 ~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~---~~~~-~~~~-~~~~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd  233 (352)
                      -+++.++|.+|++-|    ..++.++.......   .|.. .+.. ..-.++...  ++++|.+-|..       .++|+
T Consensus        16 DAv~~~~G~~y~Fkg----~~~wr~~~~~~~~~~P~~I~~~w~glp~~IdAA~~~~~~~~~yffkg~~-------~~~y~   84 (200)
T d1gena_          16 DGIAQIRGEIFFFKD----RFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNE-------YWIYS   84 (200)
T ss_dssp             SEEEEETTEEEEEET----TEEEEESSTTSCCEEEEEGGGTCTTSCSCCSEEEEETTTTEEEEEETTE-------EEEEE
T ss_pred             eEEEecCCeEEEEeC----CEEEEEcCCCCCCCCcEehhhccCCCCCCceEEEEECCCCeEEEecCce-------EEEEc
Confidence            366677999999988    55666654433321   2221 1111 112233333  67888885544       78886


Q ss_pred             CCCCce---eecCC-CCCCC-CCC-cEEE--ECCEEEEEecCCCCeEEEEeCCCCceE-----Ecc----CCCCCcCCCC
Q 045821          234 PSTDSW---LHADA-NMASG-WRG-PAVV--VDDALYVLDQSSGTKLMMWQKESREWS-----PVG----RLSTLLTRPP  296 (352)
Q Consensus       234 ~~~~~W---~~~~~-~~~~~-~~~-~~~~--~~~~l~~~gg~~~~~v~~yd~~~~~W~-----~~~----~~~~~~~~~~  296 (352)
                      -.+...   ..+.. ..+.. ..- ++..  .++++|++-|.   ..++||..+++-.     .+.    .+|.   .-.
T Consensus        85 ~~~~~~gyPk~i~~~g~p~~~~~iDAA~~~~~~g~~YfFkg~---~y~ryd~~~~~vd~~yPk~I~~~w~gvp~---~id  158 (200)
T d1gena_          85 ASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD---KFWRYNEVKKKMDPGFPKLIADAWNAIPD---NLD  158 (200)
T ss_dssp             TTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEETT---EEEEEETTTTEECSSCCEEHHHHSSSCCS---SCS
T ss_pred             CcccccCCCceehhcCCCCCccceeeEEEECCCCeEEEEeCc---EEEEeccccceeccCcceehhhccCCCCC---Ccc
Confidence            432111   11111 01111 111 2333  36899999886   8999999876521     122    2332   222


Q ss_pred             ceEEE-eCCEEEEEcCCceEEEEEcCCc
Q 045821          297 CKLVA-IGKTIFVIGKGCSAVVIDVGNI  323 (352)
Q Consensus       297 ~~~~~-~~~~i~v~gG~~~~~~~d~~~~  323 (352)
                      +++.. .++++|++-|. ..+-||..+.
T Consensus       159 AAf~~~~~g~~Yff~g~-~y~r~d~~~~  185 (200)
T d1gena_         159 AVVDLQGGGHSYFFKGA-YYLKLENQSL  185 (200)
T ss_dssp             EEEECTTTCEEEEEETT-EEEEEETTEE
T ss_pred             EEEEecCCCEEEEEECC-EEEEEECCce
Confidence            33332 36899999875 3445775543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=87.46  E-value=2.2  Score=33.86  Aligned_cols=94  Identities=12%  Similarity=0.021  Sum_probs=49.9

Q ss_pred             CceEEEeCCCCcEEEecCCCCcccceeEEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECC
Q 045821          180 HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDD  259 (352)
Q Consensus       180 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~  259 (352)
                      ..+..+|..+..+......+............+..++.++.      ..+..+|..+.+....-.. .......++.-+|
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dG  291 (337)
T d1pbyb_         219 TGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY------NVLESFDLEKNASIKRVPL-PHSYYSVNVSTDG  291 (337)
T ss_dssp             EEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE------SEEEEEETTTTEEEEEEEC-SSCCCEEEECTTS
T ss_pred             ccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEcc------ccEEEEECCCCcEEEEEcC-CCCEEEEEECCCC
Confidence            56778888888766543222222222222332222222221      2588899988876543221 1111222333466


Q ss_pred             EEEEEecCCCCeEEEEeCCCCc
Q 045821          260 ALYVLDQSSGTKLMMWQKESRE  281 (352)
Q Consensus       260 ~l~~~gg~~~~~v~~yd~~~~~  281 (352)
                      +.+++|+..+ .|.+||.++.+
T Consensus       292 ~~l~v~~~~~-~i~v~D~~t~~  312 (337)
T d1pbyb_         292 STVWLGGALG-DLAAYDAETLE  312 (337)
T ss_dssp             CEEEEESBSS-EEEEEETTTCC
T ss_pred             CEEEEEeCCC-cEEEEECCCCc
Confidence            6555666655 89999998744

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.60  E-value=6  Score=30.90  Aligned_cols=112  Identities=12%  Similarity=0.149  Sum_probs=60.7

Q ss_pred             EEEECCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCCeEEEEeCCCCceEEcc
Q 045821          207 SFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGTKLMMWQKESREWSPVG  286 (352)
Q Consensus       207 ~~~~~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~v~~yd~~~~~W~~~~  286 (352)
                      ....++...+.|+.++     .+..||..+.+-.....  .+.....++..++.+++.|+.++ .+.+||....+-...-
T Consensus       182 ~~~~~~~~l~s~~~dg-----~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~~~~l~s~s~d~-~i~iwd~~~~~~~~~~  253 (342)
T d2ovrb2         182 SLQFDGIHVVSGSLDT-----SIRVWDVETGNCIHTLT--GHQSLTSGMELKDNILVSGNADS-TVKIWDIKTGQCLQTL  253 (342)
T ss_dssp             EEEECSSEEEEEETTS-----CEEEEETTTCCEEEEEC--CCCSCEEEEEEETTEEEEEETTS-CEEEEETTTCCEEEEE
T ss_pred             cccCCCCEEEEEeCCC-----eEEEeecccceeeeEec--ccccceeEEecCCCEEEEEcCCC-EEEEEecccccccccc
Confidence            3445666666665543     47778877665332211  11111123445566667777665 8999998876544332


Q ss_pred             CCCCCcCCCCceEEEeCCEEEEEcCCce-EEEEEcCCccccc
Q 045821          287 RLSTLLTRPPCKLVAIGKTIFVIGKGCS-AVVIDVGNIGNIG  327 (352)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~i~v~gG~~~-~~~~d~~~~~w~~  327 (352)
                      ..+.. .......+..++.+++.|+.+. +.++|+++....+
T Consensus       254 ~~~~~-~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~  294 (342)
T d2ovrb2         254 QGPNK-HQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR  294 (342)
T ss_dssp             CSTTS-CSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             cccce-eeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEE
Confidence            22211 1122223344666666666554 5589998765443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.36  E-value=6.7  Score=31.24  Aligned_cols=106  Identities=8%  Similarity=0.121  Sum_probs=57.1

Q ss_pred             EEEEEeCCCCCCceEEEeCCCCcEEE-ecCCCCcccceeEEEE---CCEEEEEccCCCCCCceEEEEEeCCCCcee-ecC
Q 045821          169 KIYCIGGLGDTHSWDVYDPRTNNWKL-HTEPNIFTEIEDSFVM---DGKIYIRCSASAATSHVCALVYEPSTDSWL-HAD  243 (352)
Q Consensus       169 ~iyv~gG~~~~~~v~~yd~~t~~W~~-~~~~~~~~~~~~~~~~---~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~-~~~  243 (352)
                      .+.+.+|.+  ..+..||..+..-.. ............++.+   .+.+++.|+.++     .+..||..+++-. .+.
T Consensus       173 ~~~~~~~~d--~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~-----~i~iwd~~~~~~~~~l~  245 (325)
T d1pgua1         173 MRSMTVGDD--GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR-----KISCFDGKSGEFLKYIE  245 (325)
T ss_dssp             CEEEEEETT--TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC-----CEEEEETTTCCEEEECC
T ss_pred             ceEEEeecc--cccccccccccccceecccccCCCCccEEeeeccccceecccccccc-----ceeeeeecccccccccc
Confidence            445556554  567788877654222 2211111111122223   357777766553     4788998877643 333


Q ss_pred             CCCCCCCCCcE--EE-ECCEEEEEecCCCCeEEEEeCCCCceE
Q 045821          244 ANMASGWRGPA--VV-VDDALYVLDQSSGTKLMMWQKESREWS  283 (352)
Q Consensus       244 ~~~~~~~~~~~--~~-~~~~l~~~gg~~~~~v~~yd~~~~~W~  283 (352)
                      ... .......  +. .+++.++.++.++ .+.+||..+++-.
T Consensus       246 ~~~-~~v~~~~~s~~~~dg~~l~s~s~D~-~i~iwd~~~~~~~  286 (325)
T d1pgua1         246 DDQ-EPVQGGIFALSWLDSQKFATVGADA-TIRVWDVTTSKCV  286 (325)
T ss_dssp             BTT-BCCCSCEEEEEESSSSEEEEEETTS-EEEEEETTTTEEE
T ss_pred             ccc-cccccceeeeeccCCCEEEEEeCCC-eEEEEECCCCCEE
Confidence            211 1112222  22 3667777777666 8999999987743

>d1hxna_ b.66.1.1 (A:) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=85.81  E-value=2.8  Score=31.86  Aligned_cols=131  Identities=15%  Similarity=0.222  Sum_probs=69.3

Q ss_pred             ECCEEEEEeCCCCCCCCCCeEEEEECCC---------CeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCC
Q 045821          118 LGKNAYLLGGCGWSEDATSEVYCYDASM---------NTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPR  188 (352)
Q Consensus       118 ~~~~iyv~GG~~~~~~~~~~~~~~d~~t---------~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~  188 (352)
                      .+|.+|+|-|        +.+|+++...         ..|..++   .. . -++...++++|++-|    ..+++|...
T Consensus        18 ~~G~~y~Fkg--------~~~wr~~~~~~~~~p~~I~~~W~~lp---~~-I-DAA~~~~~~~yfFkG----~~y~~y~~~   80 (210)
T d1hxna_          18 NHGATYVFSG--------SHYWRLDTNRDGWHSWPIAHQWPQGP---ST-V-DAAFSWEDKLYLIQD----TKVYVFLTK   80 (210)
T ss_dssp             TTSCEEEEET--------TEEEESSSSSCTTCCEEGGGTCTTSC---SS-C-SEEEEETTEEEEEET----TEEEEEECS
T ss_pred             CCCCEEEEEC--------CEEEEEcCCCCCCCcccHHHhcCCCC---cc-c-ceEEEeCCeEEEEec----CEEEEEEcC
Confidence            5789999977        2344443332         2333232   11 1 233345789999999    788999654


Q ss_pred             CCc-E-----EEec---CCCCcc--cc-eeEEEE--CCEEEEEccCCCCCCceEEEEEeCCCC---ceeecCCCCCCCCC
Q 045821          189 TNN-W-----KLHT---EPNIFT--EI-EDSFVM--DGKIYIRCSASAATSHVCALVYEPSTD---SWLHADANMASGWR  251 (352)
Q Consensus       189 t~~-W-----~~~~---~~~~~~--~~-~~~~~~--~g~iyv~GG~~~~~~~~~i~~yd~~~~---~W~~~~~~~~~~~~  251 (352)
                      +.. -     +.+.   ..+...  .. -++...  +|++|++-|..       .++||..+.   .+...+-+..  ..
T Consensus        81 ~~~~~~~GyPk~i~~~~g~p~~~~~~~IDAA~~~~~~gk~yffkG~~-------y~ryd~~~~~~~~~~~~p~~~~--~v  151 (210)
T d1hxna_          81 GGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGRR-------LWWLDLKSGAQATWTELPWPHE--KV  151 (210)
T ss_dssp             SSCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEETTE-------EEEEEGGGGGGCCCEEECCSCS--CC
T ss_pred             CCcCccCCCCcChhhccCCCCCCCCCcEeEEEEeCCCCEEEEEECCE-------EEEEcCCcCCccccccCCCCCc--cc
Confidence            321 0     1121   011111  11 133332  58999986544       889997653   3433332111  01


Q ss_pred             CcE------------EEECCEEEEEecCCCCeEEEEeC
Q 045821          252 GPA------------VVVDDALYVLDQSSGTKLMMWQK  277 (352)
Q Consensus       252 ~~~------------~~~~~~l~~~gg~~~~~v~~yd~  277 (352)
                      -++            ...++.+|++-|.   ..++||.
T Consensus       152 Daa~~~~~~~~~~~~~~~~~~~YfFkG~---~y~r~~~  186 (210)
T d1hxna_         152 DGALCMEKPLGPNSCSTSGPNLYLIHGP---NLYCYRH  186 (210)
T ss_dssp             SEEEEESSCSSSCCSCSSSCEEEEEETT---EEEEESS
T ss_pred             ceeeeecCCCCccceeecCCcEEEEECC---EEEEEeC
Confidence            111            1234679999886   7899974

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.40  E-value=9.4  Score=32.07  Aligned_cols=121  Identities=9%  Similarity=-0.064  Sum_probs=65.8

Q ss_pred             EEEECCEEEEEeCCCCCCCCCCeEEEEECCC---CeeEecCCCC-CcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCC
Q 045821          115 FEVLGKNAYLLGGCGWSEDATSEVYCYDASM---NTWTDAAPMS-TARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTN  190 (352)
Q Consensus       115 ~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t---~~W~~~~~~~-~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~  190 (352)
                      +...++.+|+.-..+..   ...+...++..   ..|+.+-+-. ...........++.+++.--.+....+.+|+..++
T Consensus       293 ~~~~~~~~~~~Tn~~a~---~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~  369 (430)
T d1qfma1         293 VTNEGTVFTFKTNRHSP---NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG  369 (430)
T ss_dssp             EEEETTEEEEEECTTCT---TCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC
T ss_pred             EecCCceeecccCcccc---cceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCC
Confidence            34457788887664432   45666676553   4587653322 22333334444666655432222277899999999


Q ss_pred             cEEEecCCCCcccceeEEEE-CCEEEEEccCCCCCCceEEEEEeCCCCcee
Q 045821          191 NWKLHTEPNIFTEIEDSFVM-DGKIYIRCSASAATSHVCALVYEPSTDSWL  240 (352)
Q Consensus       191 ~W~~~~~~~~~~~~~~~~~~-~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~  240 (352)
                      .|..+.+++........... ++.+++.  ..+-.....++.||..+++.+
T Consensus       370 ~~~~~~~~~~~sv~~~~~~~~~~~~~~~--~ss~~tP~~~y~~Dl~t~~~~  418 (430)
T d1qfma1         370 ALLKIFPLEVGSVVGYSGQKKDTEIFYQ--FTSFLSPGIIYHCDLTKEELE  418 (430)
T ss_dssp             CEEEEECCCSSEEEEEECCTTCSEEEEE--EECSSCCCEEEEEETTSSSCC
T ss_pred             cEEEecCCCCceEeeccCCCCCCEEEEE--EcCCCCCCeEEEEECCCCCcc
Confidence            99988654432111111111 3345542  222223347999999887653

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.46  E-value=7.5  Score=29.39  Aligned_cols=71  Identities=11%  Similarity=0.062  Sum_probs=42.2

Q ss_pred             EEECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCCCCCcceeeeeEEECCEEEEEeCCCCCCceEEEeCCCCcEEEe
Q 045821          116 EVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSWDVYDPRTNNWKLH  195 (352)
Q Consensus       116 ~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~v~~yd~~t~~W~~~  195 (352)
                      ...++..++.|+.++      .+.+||..+.+-...-.-...  .-.+..+++++++.|+.+  ..+..++..++.....
T Consensus        21 ~~~d~~~l~sgs~Dg------~i~vWd~~~~~~~~~l~~H~~--~V~~v~~~~~~l~s~s~D--~~i~~~~~~~~~~~~~   90 (293)
T d1p22a2          21 LQYDDQKIVSGLRDN------TIKIWDKNTLECKRILTGHTG--SVLCLQYDERVIITGSSD--STVRVWDVNTGEMLNT   90 (293)
T ss_dssp             EECCSSEEEEEESSS------CEEEEESSSCCEEEEECCCSS--CEEEEECCSSEEEEEETT--SCEEEEESSSCCEEEE
T ss_pred             EEEcCCEEEEEeCCC------eEEEEECCCCcEEEEEecCCC--CEeeeecccceeeccccc--cccccccccccccccc
Confidence            345677777776543      477889887754322111111  112333577777777765  6788899888876554


Q ss_pred             c
Q 045821          196 T  196 (352)
Q Consensus       196 ~  196 (352)
                      .
T Consensus        91 ~   91 (293)
T d1p22a2          91 L   91 (293)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.22  E-value=9.5  Score=29.66  Aligned_cols=146  Identities=8%  Similarity=0.039  Sum_probs=82.8

Q ss_pred             ECCEEEEEeCCCCCCCCCCeEEEEECCCCeeEecCC--CCCcceeeeeEE--ECCEEEEEeCCCCCCceEEEeCCCCcEE
Q 045821          118 LGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAP--MSTARCYFPCGV--LNQKIYCIGGLGDTHSWDVYDPRTNNWK  193 (352)
Q Consensus       118 ~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~--~~~~r~~~~~~~--~~~~iyv~gG~~~~~~v~~yd~~t~~W~  193 (352)
                      .++.||....      ....+.++++....-+.+..  +..|   ...++  .++.+|+.-.......+++.++....-+
T Consensus        89 ~~~~lY~~d~------~~~~I~~~~~dg~~~~~l~~~~l~~p---~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~  159 (263)
T d1npea_          89 LGRTIFWTDS------QLDRIEVAKMDGTQRRVLFDTGLVNP---RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR  159 (263)
T ss_dssp             TTTEEEEEET------TTTEEEEEETTSCSCEEEECSSCSSE---EEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred             cCCeEEEecc------CCCEEEEEecCCceEEEEecccccCC---cEEEEecccCcEEEeecCCCCcEEEEecCCCCCce
Confidence            4889998853      24578888877554333322  2222   23333  3688998753222245788887655444


Q ss_pred             EecCCCCcccceeEEEE---CCEEEEEccCCCCCCceEEEEEeCCCCceeecCCCCCCCCCCcEEEECCEEEEEecCCCC
Q 045821          194 LHTEPNIFTEIEDSFVM---DGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRGPAVVVDDALYVLDQSSGT  270 (352)
Q Consensus       194 ~~~~~~~~~~~~~~~~~---~g~iyv~GG~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~  270 (352)
                      .+....  .....+..+   +++||+.-..     ...|++.|.....=+.+-.....+  ...++.++.||+..-..+ 
T Consensus       160 ~i~~~~--~~~P~glaiD~~~~~lYw~d~~-----~~~I~~~~~~g~~~~~v~~~~~~P--~~lav~~~~lYwtd~~~~-  229 (263)
T d1npea_         160 ILAQDN--LGLPNGLTFDAFSSQLCWVDAG-----THRAECLNPAQPGRRKVLEGLQYP--FAVTSYGKNLYYTDWKTN-  229 (263)
T ss_dssp             EEECTT--CSCEEEEEEETTTTEEEEEETT-----TTEEEEEETTEEEEEEEEECCCSE--EEEEEETTEEEEEETTTT-
T ss_pred             eeeeec--ccccceEEEeecCcEEEEEeCC-----CCEEEEEECCCCCeEEEECCCCCc--EEEEEECCEEEEEECCCC-
Confidence            443211  112222222   6899998422     236888888655444332222211  123457999999975444 


Q ss_pred             eEEEEeCCCCce
Q 045821          271 KLMMWQKESREW  282 (352)
Q Consensus       271 ~v~~yd~~~~~W  282 (352)
                      .|++.|..++.=
T Consensus       230 ~I~~~~~~~g~~  241 (263)
T d1npea_         230 SVIAMDLAISKE  241 (263)
T ss_dssp             EEEEEETTTTEE
T ss_pred             EEEEEECCCCcc
Confidence            899999987653