Citrus Sinensis ID: 045827

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
Protein Sequence
EEFQYFKKSKPITKASTFHIVPVKYINSPSLSYIRSRKKYLIINMCDRTINLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWYFFSQIEDKRVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVETNWIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCRVYEEDGNSKGFCHGDDDDDDNGTELS
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEEEEEEccccccHHHccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccEEcccccEEEEEEEEEEEccccccccccccEEEEEEcccccccccccccccccccccccccccEEEEEEEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEcccccEEEEccccccHHHHHccccccHcccccccccccccccccccHHHHHHHHHHHHHccccccccEEEEEEccccccccccHHccccccEEEEEcHHHHHHHHccccEEccccccccccccccEEEEEEEEEEEcccccccccccEEEEEEEEccccccccccccccccccccccccccEEEEEEEEccccccccccccccccccccccc
Coil and Loop (DISEMBL)
eefqyfkkskpitkastfhivpvkyinspslsyiRSRKKYLIINMCdrtinlppgfkflptdeELVLHflypkasllpchpniipelnpqlhdpwqlngralcsgnrwyffsqiedkrvtgngywkqldfeepvinsagkkigmKKYFVFCVgeaplgvetNWIMQEYHlcscgasanksykrrgnrilvseGCCKWVLCRVyeedgnskgfchgddddddngtels
Flexible Loop (DISEMBL)
eefqyfkkskpitkastfhivpvkyinspslsyiRSRKKYLIINMCDRTINLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWYFFSQIEDKRVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVETNWIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCRVYEEdgnskgfchgddddddngtels
Low Complexity Region (SEG)
EEFQYFKKSKPITKASTFHIVPVKYINSPSLSYIRSRKKYLIINMCDRTINLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWYFFSQIEDKRVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVETNWIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCRVYEEDGNSKGFCHGddddddNGTELS
Disordered region (IsUnstruct)
***********ITKASTFHIVPVKYINSPSLSYIRSRKKYLIINMCDRTINLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWYFFSQIEDKRVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVETNWIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCRVYEED*********************
Disordered Region (DISOPRED)
***QYFKKSKPITKASTFHIVP*******************************PGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWYFFSQIEDKRVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVETNWIMQEYHLC*********************GCCKWVLCRVYE***********************
Disordered Region (DISEMBL)
********SKPITKASTFHIVPVKYINSPSLSYIRSRKKYLIINMCDRTINLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWYFFSQIEDKRVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVETNWIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCRVYEEDGNSKGFCHGDDDD********
Disordered Region (DISPRO)
*EFQYFKKSKPITKASTFHIVPVKYINSPSLSYIRSRKKY********TINLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWYFFSQIEDKRVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVETNWIMQEYHLCSC*****************SEGCCKWVLCRVYEEDG********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
EEFQYFKKSKPITKASTFHIVPVKYINSPSLSYIRSRKKYLIINMCDRTINLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWYFFSQIEDKRVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVETNWIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCRVYEEDGNSKGFCHGDDDDDDNGTELS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	227	2.2.26 [Sep-21-2011]
A2YMR0	425	NAC transcription factor	N/A	no	0.678	0.362	0.406	1e-28
A0SPJ8	406	NAC transcription factor	N/A	no	0.669	0.374	0.412	2e-28
D2SMN4	406	NAC transcription factor	N/A	no	0.669	0.374	0.412	2e-28
Q8H4S4	425	NAC transcription factor	no	no	0.678	0.362	0.401	3e-28
A0SPJ4	405	NAC transcription factor	N/A	no	0.678	0.380	0.389	1e-27
Q8GY42	323	NAC transcription factor	no	no	0.718	0.504	0.369	3e-27
A0SPJ6	396	NAC transcription factor	N/A	no	0.678	0.388	0.403	4e-27
Q39013	289	NAC domain-containing pro	no	no	0.665	0.522	0.396	5e-27
Q7F2L3	303	NAC domain-containing pro	no	no	0.660	0.495	0.408	5e-27
A0SPJ3	405	NAC transcription factor	N/A	no	0.678	0.380	0.389	6e-27

>sp|A2YMR0|NAC10_ORYSI NAC transcription factor ONAC010 OS=Oryza sativa subsp. indica GN=ONAC010 PE=3 SV=1

 Score =  126 bits (316), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 95/172 (55%), Gaps = 18/172 (10%)

Query: 52  LPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWYFF 111
           LPPGF+F PTDEELV+H+L  KA+ +P    II E++    DPW+L  +A      WYFF
Sbjct: 29  LPPGFRFHPTDEELVVHYLKKKAASVPLPVTIIAEVDLYKFDPWELPEKANFGEQEWYFF 88

Query: 112 SQIEDK--------RVTGNGYWKQLDFEEPVINSAG--KKIGMKKYFVFCVGEAPLGVET 161
           S  + K        R   +GYWK    ++P++ S    +K+G+KK  VF  G+ P GV+T
Sbjct: 89  SPRDRKYPNGARPNRAATSGYWKATGTDKPIMASGSTREKVGVKKALVFYRGKPPKGVKT 148

Query: 162 NWIMQEYHLCSCGASANKSYKRR--------GNRILVSEGCCKWVLCRVYEE 205
           NWIM EY L    +SA      R        G+R  VS     WVLCR+Y++
Sbjct: 149 NWIMHEYRLTDTSSSAAAVATTRQPPPPITGGSRGAVSLRLDDWVLCRIYKK 200

Transcription factor of the NAC family associated with male fertility.
Oryza sativa subsp. indica (taxid: 39946)

>sp|A0SPJ8|NAM1_HORVD NAC transcription factor NAM-1 OS=Hordeum vulgare var. distichum GN=NAM-1 PE=4 SV=1

 Score =  125 bits (315), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 97/172 (56%), Gaps = 20/172 (11%)

Query: 52  LPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWYFF 111
           LPPGF+F PTDEELV+H+L  KA+  P    II E++    DPW+L  +A    + WYFF
Sbjct: 35  LPPGFRFHPTDEELVVHYLKKKAAKAPLPVTIIAEVDLYKFDPWELPEKATFGEHEWYFF 94

Query: 112 SQIEDK--------RVTGNGYWKQLDFEEPVINSAG----KKIGMKKYFVFCVGEAPLGV 159
           S  + K        R   +GYWK    ++P++ SA     +K+G+KK  VF  G+ P G+
Sbjct: 95  SPRDRKYANGARPNRAATSGYWKATGTDKPILASATGCGREKVGVKKALVFYRGKPPRGL 154

Query: 160 ETNWIMQEYHLCSCGASANKSYKRR------GNRILVSEGCCKWVLCRVYEE 205
           +TNWIM EY L   GASA  +   R      G+R   S     WVLCR+Y++
Sbjct: 155 KTNWIMHEYRL--TGASAGSTTTSRPPPVTGGSRAPASLRLDDWVLCRIYKK 204

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

>sp|D2SMN4|NAMB1_HORVS NAC transcription factor NAM-B1 OS=Hordeum vulgare subsp. spontaneum GN=NAM-B1 PE=4 SV=1

 Score =  125 bits (315), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 97/172 (56%), Gaps = 20/172 (11%)

Query: 52  LPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWYFF 111
           LPPGF+F PTDEELV+H+L  KA+  P    II E++    DPW+L  +A    + WYFF
Sbjct: 35  LPPGFRFHPTDEELVVHYLKKKAAKAPLPVTIIAEVDLYKFDPWELPEKATFGEHEWYFF 94

Query: 112 SQIEDK--------RVTGNGYWKQLDFEEPVINSAG----KKIGMKKYFVFCVGEAPLGV 159
           S  + K        R   +GYWK    ++P++ SA     +K+G+KK  VF  G+ P G+
Sbjct: 95  SPRDRKYPNGARPNRAATSGYWKATGTDKPILASATGCGREKVGVKKALVFYRGKPPRGL 154

Query: 160 ETNWIMQEYHLCSCGASANKSYKRR------GNRILVSEGCCKWVLCRVYEE 205
           +TNWIM EY L   GASA  +   R      G+R   S     WVLCR+Y++
Sbjct: 155 KTNWIMHEYRL--TGASAGSTTTSRPPPVTGGSRAPASLRLDDWVLCRIYKK 204

Transcription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare subsp. spontaneum (taxid: 77009)

>sp|Q8H4S4|NAC10_ORYSJ NAC transcription factor ONAC010 OS=Oryza sativa subsp. japonica GN=ONAC010 PE=2 SV=1

 Score =  125 bits (313), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 95/172 (55%), Gaps = 18/172 (10%)

Query: 52  LPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWYFF 111
           LPPGF+F PTDEELV+H+L  KA+ +P    II E++    DPW L  +A      WYFF
Sbjct: 29  LPPGFRFHPTDEELVVHYLKKKAASVPLPVTIIAEVDLYKFDPWDLPEKANFGEQEWYFF 88

Query: 112 SQIEDK--------RVTGNGYWKQLDFEEPVINSAG--KKIGMKKYFVFCVGEAPLGVET 161
           S  + K        R   +GYWK    ++P+++S    +K+G+KK  VF  G+ P GV+T
Sbjct: 89  SPRDRKYPNGARPNRAATSGYWKATGTDKPIMSSGSTREKVGVKKALVFYRGKPPKGVKT 148

Query: 162 NWIMQEYHLCSCGASANKSYKRR--------GNRILVSEGCCKWVLCRVYEE 205
           NWIM EY L    +SA      R        G++  VS     WVLCR+Y++
Sbjct: 149 NWIMHEYRLTDTSSSAAAVATTRRPPPPITGGSKGAVSLRLDDWVLCRIYKK 200

Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A0SPJ4|NAMB1_TRIDC NAC transcription factor NAM-B1 OS=Triticum dicoccoides GN=NAM-B1 PE=4 SV=1

 Score =  122 bits (307), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 92/172 (53%), Gaps = 18/172 (10%)

Query: 52  LPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWYFF 111
           LPPGF+F PTDEELV+H+L  KA   P   NII E++    DPW+L  +A      WYFF
Sbjct: 34  LPPGFRFHPTDEELVVHYLKKKADKAPLPVNIIAEVDLYKFDPWELPEKATIGEQEWYFF 93

Query: 112 SQIEDK--------RVTGNGYWKQLDFEEPVINSAG------KKIGMKKYFVFCVGEAPL 157
           S  + K        R   +GYWK    ++P++ S        +K+G+KK  VF  G+ P 
Sbjct: 94  SPRDRKYPNGARPNRAATSGYWKATGTDKPILASGTGCGLVREKLGVKKALVFYRGKPPK 153

Query: 158 GVETNWIMQEYHLCSCGASANKSYK----RRGNRILVSEGCCKWVLCRVYEE 205
           G++TNWIM EY L     S   + +      G+R   S     WVLCR+Y++
Sbjct: 154 GLKTNWIMHEYRLTDASGSTTATNRPPPVTGGSRAAASLRLDDWVLCRIYKK 205

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) and the hexaploid wheat (T.aestivum) carry a one bp insertion generating a non-functional allele of this gene. They have a delayed senescence and a lower grain protein, zinc and iron content (PubMed:17124321).

Triticum dicoccoides (taxid: 85692)

>sp|Q8GY42|NAC25_ARATH NAC transcription factor 25 OS=Arabidopsis thaliana GN=NAC025 PE=2 SV=1

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/184 (36%), Positives = 100/184 (54%), Gaps = 21/184 (11%)

Query: 44  NMCDRTI-----NLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLN 98
           NM D +I     +LPPGF+F PTDEELV+H+L  KA  +P   +II E++    DPW+L 
Sbjct: 3   NMGDSSIGPGHPHLPPGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLYKFDPWELP 62

Query: 99  GRALCSGNRWYFFSQIEDK--------RVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVF 150
            +A    + WYFFS  + K        R   +GYWK    ++P+      K+G+KK  VF
Sbjct: 63  SKASFGEHEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTCNSHKVGVKKALVF 122

Query: 151 CVGEAPLGVETNWIMQEYHLC----SCGASANKSYKRRGNRILVSEGCCKWVLCRVYEED 206
             G+ P G++T+WIM EY L     S  A        R N + + +    WVLCR+Y+++
Sbjct: 123 YGGKPPKGIKTDWIMHEYRLTDGNLSTAAKPPDLTTTRKNSLRLDD----WVLCRIYKKN 178

Query: 207 GNSK 210
            + +
Sbjct: 179 SSQR 182

Transcription factor of the NAC family. May be associated with anther development and pollen production.

Arabidopsis thaliana (taxid: 3702)

>sp|A0SPJ6|NAMB2_TRIDB NAC transcription factor NAM-B2 OS=Triticum durum GN=NAM-B2 PE=2 SV=1

 Score =  121 bits (304), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 92/166 (55%), Gaps = 12/166 (7%)

Query: 52  LPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWYFF 111
           LPPGF+F PTDEELV+H+L  KA+ +P    II E++    DPW+L  +A      WYFF
Sbjct: 28  LPPGFRFHPTDEELVVHYLKKKAAKVPLPVTIITEVDLYKFDPWELPEKATFGEQEWYFF 87

Query: 112 SQIEDK--------RVTGNGYWKQLDFEEPVINS--AGKKIGMKKYFVFCVGEAPLGVET 161
           S  + K        R   +GYWK    ++P++ S    +K+G+KK  VF  G+ P G++T
Sbjct: 88  SPRDRKYPNGARPNRAATSGYWKATGTDKPILASGCGREKVGVKKALVFYRGKPPKGLKT 147

Query: 162 NWIMQEYHLCSCGASANKSYKR--RGNRILVSEGCCKWVLCRVYEE 205
           NWIM EY L    +SA  S      G     S     WVLCR+Y++
Sbjct: 148 NWIMHEYRLTDASSSATTSRPPPVTGGSRSASLRLDDWVLCRIYKK 193

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1.

Triticum durum (taxid: 4567)

>sp|Q39013|NAC2_ARATH NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2

 Score =  121 bits (303), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 97/169 (57%), Gaps = 18/169 (10%)

Query: 50  INLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWY 109
           + LPPGF+F PTDEELV+H+L  K +       II E++   +DPW+L G AL     WY
Sbjct: 5   LQLPPGFRFHPTDEELVMHYLCRKCASQSIAVPIIAEIDLYKYDPWELPGLALYGEKEWY 64

Query: 110 FFSQIEDK--------RVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVET 161
           FFS  + K        R  G+GYWK    ++P+     K +G+KK  VF  G+AP G +T
Sbjct: 65  FFSPRDRKYPNGSRPNRSAGSGYWKATGADKPI--GLPKPVGIKKALVFYAGKAPKGEKT 122

Query: 162 NWIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCRVYEEDGNSK 210
           NWIM EY L    A  ++S +++ N + + +    WVLCR+Y + G ++
Sbjct: 123 NWIMHEYRL----ADVDRSVRKKKNSLRLDD----WVLCRIYNKKGATE 163

Arabidopsis thaliana (taxid: 3702)

>sp|Q7F2L3|NAC48_ORYSJ NAC domain-containing protein 48 OS=Oryza sativa subsp. japonica GN=NAC48 PE=2 SV=1

 Score =  121 bits (303), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/169 (40%), Positives = 93/169 (55%), Gaps = 19/169 (11%)

Query: 48  RTINLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNR 107
           + + LPPGF+F PTDEELV+H+L  + + LP    II E++    DPWQL   AL     
Sbjct: 5   QDLQLPPGFRFHPTDEELVMHYLCRRCAGLPIAVPIIAEIDLYKFDPWQLPRMALYGEKE 64

Query: 108 WYFFSQIEDK--------RVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGV 159
           WYFFS  + K        R  G+GYWK    ++PV   + K + +KK  VF  G+AP G 
Sbjct: 65  WYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPV--GSPKPVAIKKALVFYAGKAPKGE 122

Query: 160 ETNWIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCRVYEEDGN 208
           +TNWIM EY L     SA     R+ N + + +    WVLCR+Y + G 
Sbjct: 123 KTNWIMHEYRLADVDRSA-----RKKNSLRLDD----WVLCRIYNKKGG 162

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A0SPJ3|NAMA1_TRIDB NAC transcription factor NAM-A1 OS=Triticum durum GN=NAM-A1 PE=2 SV=1

 Score =  120 bits (302), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 92/172 (53%), Gaps = 18/172 (10%)

Query: 52  LPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWYFF 111
           LPPGF+F PTDEELV+H+L  KA+ +P    II E++    DPW+L  +A      WYFF
Sbjct: 33  LPPGFRFHPTDEELVVHYLKKKAAKVPLPVTIIAEVDLYKFDPWELPEKATFGEQEWYFF 92

Query: 112 SQIEDK--------RVTGNGYWKQLDFEEPVINSAG------KKIGMKKYFVFCVGEAPL 157
           S  + K        R   +GYWK    ++P++ S        +K+G+KK  VF  G+ P 
Sbjct: 93  SPRDRKYPNGARPNRAATSGYWKATGTDKPILASGTGCGLVREKLGVKKALVFYRGKPPK 152

Query: 158 GVETNWIMQEYHLCSCGASANKSYK----RRGNRILVSEGCCKWVLCRVYEE 205
           G++TNWIM EY L     S   S        G+R   S     WVLCR+Y++
Sbjct: 153 GLKTNWIMHEYRLTDVSGSTTTSRPPPPVTGGSRAAASLRLDDWVLCRIYKK 204

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-B2) and one extra pseudogene (NAM-B1) (PubMed:17124321).

Triticum durum (taxid: 4567)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
147855045	569	hypothetical protein VITISV_027802 [Viti	0.925	0.369	0.541	1e-56
359477005	198	PREDICTED: NAC domain-containing protein	0.775	0.888	0.616	2e-56
224096014	196	NAC domain protein, IPR003441 [Populus t	0.740	0.857	0.593	2e-52
356508965	201	PREDICTED: NAC domain-containing protein	0.792	0.895	0.543	1e-49
356525900	190	PREDICTED: NAC domain-containing protein	0.740	0.884	0.556	9e-49
356558598	191	PREDICTED: NAC domain-containing protein	0.740	0.879	0.556	1e-48
356511182	205	PREDICTED: NAC domain-containing protein	0.775	0.858	0.551	7e-48
224083454	195	NAC domain protein, IPR003441 [Populus t	0.731	0.851	0.575	7e-48
225447803	192	PREDICTED: NAC domain-containing protein	0.762	0.901	0.513	2e-47
356516370	204	PREDICTED: NAC domain-containing protein	0.696	0.774	0.560	3e-47

>gi|147855045|emb|CAN80248.1| hypothetical protein VITISV_027802 [Vitis vinifera]

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 124/229 (54%), Positives = 152/229 (66%), Gaps = 19/229 (8%)

Query: 10  KPITKASTFHIVPVK-----YINSPSLSYIRSRKKYLI----INMCDRTINLPPGFKFLP 60
           K  T ++ FHI PV      ++  PSL+        L       M + +INLPPGF+F P
Sbjct: 284 KEDTTSARFHI-PVADSFRAFLGEPSLASEFDDPAILYEEPSTKMEEGSINLPPGFQFYP 342

Query: 61  TDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWYFFSQIEDKRVT 120
           TDEELVL FLY KASLLPC+PNIIP+L+  +HDPW+L G+AL SG +WYFFSQ    R T
Sbjct: 343 TDEELVLDFLYRKASLLPCYPNIIPDLDSYVHDPWELXGKALSSGXQWYFFSQKTQDRAT 402

Query: 121 GNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVETNWIMQEYHLCSCGASANKS 180
            NGYWKQLD +E +  SAGKK+G+KKY +F +GEAP G+ETNWIMQEY L + G     S
Sbjct: 403 KNGYWKQLDIDEAIYTSAGKKVGIKKYLLFYMGEAPEGIETNWIMQEYSLSNSGLGCT-S 461

Query: 181 YKR-RGNRILVSEGCCKWVLCRVYEEDGNSKGF-CHGDDDDDDNGTELS 227
           YKR  G +IL      +WVLCRVYE   +  GF C   D+DDD+GTELS
Sbjct: 462 YKRIAGKKIL---DGVEWVLCRVYERKSSQHGFWC---DEDDDDGTELS 504

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477005|ref|XP_002264894.2| PREDICTED: NAC domain-containing protein 68-like [Vitis vinifera] gi|296088532|emb|CBI37523.3| unnamed protein product [Vitis vinifera]

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 114/185 (61%), Positives = 138/185 (74%), Gaps = 9/185 (4%)

Query: 45  MCDRTINLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCS 104
           M + +INLPPGF+F PTDEELVL FLY KASLLPC+PNIIP+L+  +HDPW+L+G+AL S
Sbjct: 1   MEEGSINLPPGFQFYPTDEELVLDFLYRKASLLPCYPNIIPDLDSYVHDPWELSGKALSS 60

Query: 105 GNRWYFFSQIEDKRVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVETNWI 164
           GN+WYFFSQ    R T NGYWKQLD +E +  SAGKK+G+KKY +F +GEAP G+ETNWI
Sbjct: 61  GNQWYFFSQKTQDRATKNGYWKQLDIDEAIYTSAGKKVGIKKYLLFYMGEAPEGIETNWI 120

Query: 165 MQEYHLCSCGASANKSYKR-RGNRILVSEGCCKWVLCRVYEEDGNSKGF-CHGDDDDDDN 222
           MQEY L + G     SYKR  G +IL      +WVLCRVYE   +  GF C   D+DDD+
Sbjct: 121 MQEYSLSNSGLGCT-SYKRIAGKKILDG---VEWVLCRVYERKSSQHGFWC---DEDDDD 173

Query: 223 GTELS 227
           GTELS
Sbjct: 174 GTELS 178

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096014|ref|XP_002310519.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222853422|gb|EEE90969.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/177 (59%), Positives = 132/177 (74%), Gaps = 9/177 (5%)

Query: 51  NLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWYF 110
           NLPPGF F PTDEELVLHFL+ KASLLPC+P+IIP+L    HDPWQL G+AL SGN+WY+
Sbjct: 9   NLPPGFVFSPTDEELVLHFLHRKASLLPCNPDIIPDLGLYPHDPWQLEGKALSSGNQWYY 68

Query: 111 FSQIEDKRVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVETNWIMQEYHL 170
           FSQ+ + +VT NG+WK LD EEP+ +SAGKK+G+KKY V+C+G    GVET+W+MQEYHL
Sbjct: 69  FSQVMENQVTENGFWKSLDTEEPIFSSAGKKVGLKKYLVYCIGAE--GVETSWMMQEYHL 126

Query: 171 CSCGASANKSYKRRGNRILVSEGCCKWVLCRVYEEDGNSKGFCHGDDDDDDNGTELS 227
           C+   S   SYKR+         C +W+LCRVYE +G+      G+  DDD+GTELS
Sbjct: 127 CNSKLSGT-SYKRKQKL-----DCHQWILCRVYEREGSCIQNV-GNTTDDDDGTELS 176

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508965|ref|XP_003523223.1| PREDICTED: NAC domain-containing protein 19 [Glycine max]

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 100/184 (54%), Positives = 131/184 (71%), Gaps = 4/184 (2%)

Query: 45  MCDRTINLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCS 104
           M D ++NLPPGF F PTDEELVLHFLY KASL+PCHPNIIP+L+P    PW+LNG+AL S
Sbjct: 1   MEDGSVNLPPGFFFSPTDEELVLHFLYCKASLIPCHPNIIPDLHPSQLAPWELNGKALLS 60

Query: 105 GNRWYFFSQIEDKRVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVETNWI 164
           GN++YFF+++ + R   NGYWK     EP++++  KK+GMKKY VF +GEAP G ET+W+
Sbjct: 61  GNQYYFFTKVNENRARENGYWKDTGVTEPILSTFDKKVGMKKYLVFHIGEAPQGTETSWV 120

Query: 165 MQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCRVYEEDGNSKGF-CHGDDDDDDNG 223
           MQEY++CS G         R  R    +   KWVLC+VYE+  + +G  C+   DDDD+G
Sbjct: 121 MQEYYICSSGFDTASYRSAR-RRRKHDQSWSKWVLCKVYEKIRSQQGVNCYS--DDDDSG 177

Query: 224 TELS 227
           +ELS
Sbjct: 178 SELS 181

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525900|ref|XP_003531559.1| PREDICTED: NAC domain-containing protein 68-like [Glycine max]

 Score =  199 bits (505), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 103/185 (55%), Positives = 130/185 (70%), Gaps = 17/185 (9%)

Query: 45  MCDRTINLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCS 104
           M D  +NLPPGF+F PTDEELV+HFL+ KASLLPCHP+ IP+L    +DPW+L+GRAL  
Sbjct: 1   MGDNNVNLPPGFRFYPTDEELVVHFLHRKASLLPCHPDAIPDLEVYPYDPWELDGRALAE 60

Query: 105 GNRWYFFSQIEDKRVTGNGYWKQLDFEEPVINS-AGKKIGMKKYFVFCVGEAPL-GVETN 162
           GN+WY++S+    RVTGNGYWK    EEPV++S + K++GMKKYFVF VGEAP  G++TN
Sbjct: 61  GNQWYYYSRRTQNRVTGNGYWKPTGMEEPVVSSTSNKRVGMKKYFVFHVGEAPTAGIKTN 120

Query: 163 WIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCRVYEEDGNSKGFCHGDDDDDDN 222
           WIMQEY L    +S   S ++   +I  +    KWV+CRVYE +G           DDDN
Sbjct: 121 WIMQEYRLSDSASSTRSSKRKPQPKIEYN----KWVICRVYERNG-----------DDDN 165

Query: 223 GTELS 227
           GTELS
Sbjct: 166 GTELS 170

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558598|ref|XP_003547591.1| PREDICTED: NAC domain-containing protein 68 [Glycine max]

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 103/185 (55%), Positives = 131/185 (70%), Gaps = 17/185 (9%)

Query: 45  MCDRTINLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCS 104
           M D  +NLPPGF+F PTDEELV+HFL+ KASLLPCHP++IP+L    +DPW+L+GRAL  
Sbjct: 1   MGDNNVNLPPGFRFYPTDEELVVHFLHRKASLLPCHPDVIPDLEVYPYDPWELDGRALAE 60

Query: 105 GNRWYFFSQIEDKRVTGNGYWKQLDFEEPVINS-AGKKIGMKKYFVFCVGEAPL-GVETN 162
           GN+WY++S+    RVTGNGYWK    EEPV++S + K++GMKKYFVF VGEAP  G++TN
Sbjct: 61  GNQWYYYSRRTQNRVTGNGYWKPTGIEEPVVSSTSNKRVGMKKYFVFHVGEAPAAGIKTN 120

Query: 163 WIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCRVYEEDGNSKGFCHGDDDDDDN 222
           WIMQEY L    +S   S ++   +I  +    KWV+CRVYE +G           DDDN
Sbjct: 121 WIMQEYRLSDSSSSTRSSKRKSQPKIEYN----KWVICRVYERNG-----------DDDN 165

Query: 223 GTELS 227
           GTELS
Sbjct: 166 GTELS 170

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511182|ref|XP_003524308.1| PREDICTED: NAC domain-containing protein 68-like [Glycine max]

 Score =  196 bits (497), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 101/183 (55%), Positives = 132/183 (72%), Gaps = 7/183 (3%)

Query: 49  TINLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRW 108
           ++NLPPGF F PTDEELVLHFL  KASL PCHPNIIPEL+  L DPW+LNG+AL SGN+ 
Sbjct: 5   SVNLPPGFCFSPTDEELVLHFLCSKASL-PCHPNIIPELDLSLLDPWELNGKALSSGNQH 63

Query: 109 YFFSQIEDKRVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVETNWIMQEY 168
           YFF+++++ R T NGYWK++   EP+++S+ +K+G+KKY VF +GEAP G ET+W+MQEY
Sbjct: 64  YFFTKVKENRSTENGYWKEIGVMEPIVSSS-EKVGIKKYLVFNLGEAPQGTETSWVMQEY 122

Query: 169 HLCSCG---ASANKSYKRRGNRILVSEGCCKWVLCRVYEEDG-NSKGFCHGDDDDDDNGT 224
           H+CS G    +A+     RG R     G  KWVLC+ YE+    S+   +   D+DD GT
Sbjct: 123 HICSSGFNTTTASNCASTRGRRKTDQCG-SKWVLCKAYEKKSCQSQQGVNCYSDEDDCGT 181

Query: 225 ELS 227
           ELS
Sbjct: 182 ELS 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083454|ref|XP_002307034.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222856483|gb|EEE94030.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  196 bits (497), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 103/179 (57%), Positives = 130/179 (72%), Gaps = 13/179 (7%)

Query: 51  NLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWYF 110
           NLPPGF F P+DEEL+LHFL  KASLLPCHP+IIP+L     DPWQL GRAL S N+WY+
Sbjct: 9   NLPPGFIFSPSDEELILHFLDRKASLLPCHPDIIPDLGLYPQDPWQLEGRALWSENQWYY 68

Query: 111 FSQIEDKRVTGNGYWKQLDFEEPVINSA-GKKIGMKKYFVFCVGEAPLGVETNWIMQEYH 169
           FS++ + + TGNG+WK LD EEP+ +S+ GKK+G+KKY V+C+G  P GVETNW+MQEYH
Sbjct: 69  FSRVMENQATGNGFWKPLDIEEPIFSSSTGKKVGLKKYLVYCIG--PEGVETNWMMQEYH 126

Query: 170 LCSCGASANKSYKRRGNRILVSEGCCKWVLCRVYEEDGN-SKGFCHGDDDDDDNGTELS 227
           LCS  +S     +++         C KW+LCRVY+ +G+ SK   H DDDD   GTELS
Sbjct: 127 LCSSKSSGKSYKRKQ------KLDCSKWILCRVYQREGSCSKSSNHSDDDD---GTELS 176

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447803|ref|XP_002266820.1| PREDICTED: NAC domain-containing protein 68 [Vitis vinifera] gi|147828018|emb|CAN66223.1| hypothetical protein VITISV_006066 [Vitis vinifera] gi|296081487|emb|CBI20010.3| unnamed protein product [Vitis vinifera]

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/183 (51%), Positives = 126/183 (68%), Gaps = 10/183 (5%)

Query: 45  MCDRTINLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCS 104
           M D   NLPPGF+F PTDEELV+HFL+ KA+LLPCHP++IP+L+   +DPW+L+G+AL  
Sbjct: 1   MGDHNFNLPPGFRFYPTDEELVVHFLHRKAALLPCHPDVIPDLDLYPYDPWELDGKALAE 60

Query: 105 GNRWYFFSQIEDKRVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVETNWI 164
           GN+WY+FS+    R T NGYWK L  +EP+++S GK++GMKKY VF +GEAP G++++WI
Sbjct: 61  GNQWYYFSRRTQNRSTNNGYWKTLGIDEPIMSSGGKRVGMKKYMVFYIGEAPSGIKSSWI 120

Query: 165 MQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCRVYEEDGNSKGFCHGDDDDDDNGT 224
           MQEY L   G+S++        R        KWV+CRV E +           DDDD+GT
Sbjct: 121 MQEYRLSDSGSSSSSGRSSSKRRGHSKIDYSKWVVCRVSERNS----------DDDDDGT 170

Query: 225 ELS 227
           ELS
Sbjct: 171 ELS 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516370|ref|XP_003526868.1| PREDICTED: NAC domain-containing protein 68-like [Glycine max]

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 92/164 (56%), Positives = 122/164 (74%), Gaps = 6/164 (3%)

Query: 45  MCDRTINLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNP-QLHDPWQLNGRALC 103
           M D +INLPPGF F PTDEELV+HFLY KASL+P HPNIIP+L+P QL DPW+LNG+AL 
Sbjct: 1   MEDESINLPPGFLFSPTDEELVVHFLYCKASLIPYHPNIIPDLDPSQLDDPWELNGKALL 60

Query: 104 SGNRWYFFSQIEDKRVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVETNW 163
           SGN++YFF+++ + R T NGYWK     +P++++  K++GMKKY VF +GEAP G ET+W
Sbjct: 61  SGNQYYFFTKVNENRTTENGYWKDTGVTKPILSTFDKEVGMKKYLVFHIGEAPQGTETSW 120

Query: 164 IMQEYHLCSC--GASANKSYKRRGNRILVSEGCCKWVLCRVYEE 205
           +MQEYH+CS     ++ +S +RR       +   K VLCRVYE+
Sbjct: 121 VMQEYHICSSEFDTASYRSVRRRRKH---DQSWSKCVLCRVYEK 161

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
TAIR|locus:2174769	187	XND1 "xylem NAC domain 1" [Ara	0.674	0.818	0.506	1.7e-41
TAIR|locus:2198225	289	ATAF1 [Arabidopsis thaliana (t	0.651	0.512	0.403	8.2e-28
TAIR|locus:2011516	320	NAM "NO APICAL MERISTEM" [Arab	0.700	0.496	0.388	2.8e-27
TAIR|locus:2007166	268	NAP "NAC-like, activated by AP	0.660	0.559	0.413	5.7e-27
TAIR|locus:2008490	323	NAC025 "NAC domain containing	0.718	0.504	0.369	1.2e-26
TAIR|locus:2090186	364	NAC2 "NAC domain containing pr	0.700	0.436	0.402	2.5e-26
TAIR|locus:2160634	312	NAC102 "NAC domain containing	0.801	0.583	0.336	5.2e-26
TAIR|locus:2011531	317	NAC019 "NAC domain containing	0.651	0.466	0.378	1.1e-25
TAIR|locus:2090176	317	NAC3 "NAC domain containing pr	0.651	0.466	0.384	1.8e-25
TAIR|locus:2204685	253	NAC032 "NAC domain containing	0.647	0.581	0.397	2.2e-25

TAIR|locus:2174769 XND1 "xylem NAC domain 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 81/160 (50%), Positives = 113/160 (70%)

Query:    50 INLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWY 109
             +NLPPGF+F PTDEELV+HFL+ KASLLPCHP++IP+L+   +DPW L G+AL  G +WY
Sbjct:     1 MNLPPGFRFFPTDEELVVHFLHRKASLLPCHPDVIPDLDLYHYDPWDLPGKALGEGRQWY 60

Query:   110 FFSQIEDKRVTGNGYWKQLDFEEPVINSAG-KKIGMKKYFVFCVGEAPLGVETNWIMQEY 168
             F+S+   +RVT NGYW  +  +EP+  S+  KK+G+KKY  F +G++    +TNWIMQEY
Sbjct:    61 FYSRKTQERVTSNGYWGSMGMDEPIYTSSTHKKVGIKKYLTFYLGDS----QTNWIMQEY 116

Query:   169 HLCSCGASANKSYKR--RGNRILVSEGCCKWVLCRVYEED 206
              L    +S+++S KR  R +         KWV+CRVYE++
Sbjct:   117 SLPDSSSSSSRSSKRSSRASSSSHKPDYSKWVICRVYEQN 156

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010089 "xylem development" evidence=IMP

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

TAIR|locus:2198225 ATAF1 [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 67/166 (40%), Positives = 95/166 (57%)

Query:    50 INLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWY 109
             + LPPGF+F PTDEELV+H+L  K +       II E++   +DPW+L G AL     WY
Sbjct:     5 LQLPPGFRFHPTDEELVMHYLCRKCASQSIAVPIIAEIDLYKYDPWELPGLALYGEKEWY 64

Query:   110 FFSQIEDK--------RVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVET 161
             FFS  + K        R  G+GYWK    ++P+     K +G+KK  VF  G+AP G +T
Sbjct:    65 FFSPRDRKYPNGSRPNRSAGSGYWKATGADKPI--GLPKPVGIKKALVFYAGKAPKGEKT 122

Query:   162 NWIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCRVYEEDG 207
             NWIM EY L    A  ++S +++ N + + +    WVLCR+Y + G
Sbjct:   123 NWIMHEYRL----ADVDRSVRKKKNSLRLDD----WVLCRIYNKKG 160

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2011516 NAM "NO APICAL MERISTEM" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 68/175 (38%), Positives = 99/175 (56%)

Query:    51 NLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWYF 110
             NLPPGF+F PTDEELV+H+L  KA  +P    II +++    DPW+L  +A      WYF
Sbjct:    16 NLPPGFRFHPTDEELVIHYLKRKADSVPLPVAIIADVDLYKFDPWELPAKASFGEQEWYF 75

Query:   111 FSQIEDK--------RVTGNGYWKQLDFEEPVINSAG---KKIGMKKYFVFCVGEAPLGV 159
             FS  + K        R   +GYWK    ++PVI++ G   KK+G+KK  VF  G+ P GV
Sbjct:    76 FSPRDRKYPNGARPNRAATSGYWKATGTDKPVISTGGGGSKKVGVKKALVFYSGKPPKGV 135

Query:   160 ETNWIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCRVYEEDGNSKGFCH 214
             +++WIM EY L     +    +  + N + + +    WVLCR+Y+++ NS    H
Sbjct:   136 KSDWIMHEYRLTDNKPTHICDFGNKKNSLRLDD----WVLCRIYKKN-NSTASRH 185

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

TAIR|locus:2007166 NAP "NAC-like, activated by AP3/PI" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 69/167 (41%), Positives = 93/167 (55%)

Query:    52 LPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWYFF 111
             LPPGF+F PTDEEL++++L  +    PC  +IIPE++    DPWQL  +     N WYFF
Sbjct:     9 LPPGFRFHPTDEELIVYYLRNQTMSKPCPVSIIPEVDIYKFDPWQLPEKTEFGENEWYFF 68

Query:   112 SQIEDKRVTG--------NGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVETNW 163
             S  E K   G        +GYWK    ++  I+S    +G+KK  VF  G  P G++T+W
Sbjct:    69 SPRERKYPNGVRPNRAAVSGYWKATGTDK-AIHSGSSNVGVKKALVFYKGRPPKGIKTDW 127

Query:   164 IMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCRVYEEDGNSK 210
             IM EY L     S   S KR G+  L      +WVLCR+Y++ G SK
Sbjct:   128 IMHEYRLHD---SRKASTKRNGSMRLD-----EWVLCRIYKKRGASK 166

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010150 "leaf senescence" evidence=IMP

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=IMP

GO:0009908 "flower development" evidence=IMP

TAIR|locus:2008490 NAC025 "NAC domain containing protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 68/184 (36%), Positives = 100/184 (54%)

Query:    44 NMCDRTI-----NLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLN 98
             NM D +I     +LPPGF+F PTDEELV+H+L  KA  +P   +II E++    DPW+L 
Sbjct:     3 NMGDSSIGPGHPHLPPGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLYKFDPWELP 62

Query:    99 GRALCSGNRWYFFSQIEDK--------RVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVF 150
              +A    + WYFFS  + K        R   +GYWK    ++P+      K+G+KK  VF
Sbjct:    63 SKASFGEHEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTCNSHKVGVKKALVF 122

Query:   151 CVGEAPLGVETNWIMQEYHLC----SCGASANKSYKRRGNRILVSEGCCKWVLCRVYEED 206
               G+ P G++T+WIM EY L     S  A        R N + + +    WVLCR+Y+++
Sbjct:   123 YGGKPPKGIKTDWIMHEYRLTDGNLSTAAKPPDLTTTRKNSLRLDD----WVLCRIYKKN 178

Query:   207 GNSK 210
              + +
Sbjct:   179 SSQR 182

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2090186 NAC2 "NAC domain containing protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 68/169 (40%), Positives = 95/169 (56%)

Query:    51 NLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWYF 110
             NLPPGF+F PTDEELV+H+L  KA+  P    II E++    DPW+L  +A      WYF
Sbjct:    16 NLPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIAEVDLYKFDPWELPAKASFGEQEWYF 75

Query:   111 FSQIEDK--------RVTGNGYWKQLDFEEPVINSAG-KKIGMKKYFVFCVGEAPLGVET 161
             FS  + K        R   +GYWK    ++PV+ S G +K+G+KK  VF  G+ P GV++
Sbjct:    76 FSPRDRKYPNGARPNRAATSGYWKATGTDKPVLASDGNQKVGVKKALVFYSGKPPKGVKS 135

Query:   162 NWIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCRVYEEDGNSK 210
             +WIM EY L     +        GN+   S     WVLCR+Y+++  S+
Sbjct:   136 DWIMHEYRLIENKPNNRPPGCDFGNK-KNSLRLDDWVLCRIYKKNNASR 183

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2160634 NAC102 "NAC domain containing protein 102" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 67/199 (33%), Positives = 102/199 (51%)

Query:    22 PVKYINSPSLSYIRSRKKYLIINMCDRTINLPPGFKFLPTDEELVLHFLYPKASLLPCHP 81
             P++         + +RK+          +NLP GF+F PTDEELV  +L  + +  P + 
Sbjct:    20 PIRRFIKTQNRILSTRKQQGTFPKMKAELNLPAGFRFHPTDEELVKFYLCRRCASEPINV 79

Query:    82 NIIPELNPQLHDPWQLNGRALCSGNRWYFFSQIEDK--------RVTGNGYWKQLDFEEP 133
              +I E++    +PW+L   AL     WYFFS  + K        R  G GYWK    ++P
Sbjct:    80 PVIAEIDLYKFNPWELPEMALYGEKEWYFFSHRDRKYPNGSRPNRAAGTGYWKATGADKP 139

Query:   134 VINSAGKKIGMKKYFVFCVGEAPLGVETNWIMQEYHLCSCGASANKSYKRRGNRILVSEG 193
             +     K +G+KK  VF  G+AP G++TNWIM EY L +   SA+ + K   N + + + 
Sbjct:   140 I--GKPKTLGIKKALVFYAGKAPKGIKTNWIMHEYRLANVDRSASTNKK---NNLRLDD- 193

Query:   194 CCKWVLCRVYEEDGNSKGF 212
                WVLCR+Y + G  + +
Sbjct:   194 ---WVLCRIYNKKGTMEKY 209

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0001666 "response to hypoxia" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2011531 NAC019 "NAC domain containing protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 64/169 (37%), Positives = 98/169 (57%)

Query:    50 INLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWY 109
             ++LPPGF+F PTDEEL++ +L  KA+       +I E++    DPW L  +AL     WY
Sbjct:    12 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 71

Query:   110 FFSQIEDK--------RVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVET 161
             FFS  + K        RV G+GYWK    ++ +I++ G+++G+KK  VF +G+AP G +T
Sbjct:    72 FFSPRDRKYPNGSRPNRVAGSGYWKATGTDK-IISTEGQRVGIKKALVFYIGKAPKGTKT 130

Query:   162 NWIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCRVYEEDGNSK 210
             NWIM EY L        +  +R G+  L       WVLCR+Y++  +++
Sbjct:   131 NWIMHEYRLI-------EPSRRNGSTKLDD-----WVLCRIYKKQSSAQ 167

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2090176 NAC3 "NAC domain containing protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 65/169 (38%), Positives = 98/169 (57%)

Query:    50 INLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWY 109
             ++LPPGF+F PTDEEL++ +L  KA+       +I E++    DPW L  +AL     WY
Sbjct:    12 LSLPPGFRFYPTDEELMVEYLCRKAAGHDFSLQLIAEIDLYKFDPWVLPSKALFGEKEWY 71

Query:   110 FFSQIEDK--------RVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVET 161
             FFS  + K        RV G+GYWK    ++ VI++ G+++G+KK  VF +G+AP G +T
Sbjct:    72 FFSPRDRKYPNGSRPNRVAGSGYWKATGTDK-VISTEGRRVGIKKALVFYIGKAPKGTKT 130

Query:   162 NWIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCRVYEEDGNSK 210
             NWIM EY L        +  +R G+  L       WVLCR+Y++  +++
Sbjct:   131 NWIMHEYRLI-------EPSRRNGSTKLDD-----WVLCRIYKKQTSAQ 167

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2204685 NAC032 "NAC domain containing protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 66/166 (39%), Positives = 90/166 (54%)

Query:    50 INLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWY 109
             +  PPGF+F PTDEELVL +L  K +  P    II EL+   +DPW L   AL     WY
Sbjct:     8 LQFPPGFRFHPTDEELVLMYLCRKCASQPIPAPIITELDLYRYDPWDLPDMALYGEKEWY 67

Query:   110 FFSQIEDK--------RVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVET 161
             FFS  + K        R  G GYWK    ++P+     K +G+KK  VF  G+ P G +T
Sbjct:    68 FFSPRDRKYPNGSRPNRAAGTGYWKATGADKPI--GRPKPVGIKKALVFYSGKPPNGEKT 125

Query:   162 NWIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCRVYEEDG 207
             NWIM EY L    A  ++S +++ N + + +    WVLCR+Y + G
Sbjct:   126 NWIMHEYRL----ADVDRSVRKK-NSLRLDD----WVLCRIYNKKG 162

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00006032001 SubName- Full=Chromosome chr4 scaffold_162, whole genome shotgun sequence; (198 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	227
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	6e-47

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  151 bits (383), Expect = 6e-47
 Identities = 56/130 (43%), Positives = 77/130 (59%), Gaps = 10/130 (7%)

Query: 52  LPPGFKFLPTDEELVLHFLYPKASLLPCH-PNIIPELNPQLHDPWQLNGRALCSGNR-WY 109
           LPPGF+F PTDEELV+++L  K    P    ++IPE++    +PW L       G+R WY
Sbjct: 1   LPPGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLPDGKAKGGDREWY 60

Query: 110 FFSQIEDK--------RVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVET 161
           FFS  + K        R TG+GYWK    ++PV++  G+ +GMKK  VF  G AP G +T
Sbjct: 61  FFSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSKGGEVVGMKKTLVFYKGRAPKGEKT 120

Query: 162 NWIMQEYHLC 171
           +W+M EY L 
Sbjct: 121 DWVMHEYRLE 130

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	227
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=1.3e-41  Score=271.08  Aligned_cols=120  Identities=44%  Similarity=0.853  Sum_probs=95.9

Q ss_pred             CCCceeEcCCHHHHHHHHhhhhhhCCCCCC-CceeeCCCCCCCCCCcccccccCCCeEEEEeecc--------CCccccC
Q 045827           52 LPPGFKFLPTDEELVLHFLYPKASLLPCHP-NIIPELNPQLHDPWQLNGRALCSGNRWYFFSQIE--------DKRVTGN  122 (227)
Q Consensus        52 LPpGfRF~PTDeELI~~YL~~Ki~g~pl~~-~~I~~~DVy~~~P~eLp~~~~~~~~~wyFFs~~~--------~~R~~~~  122 (227)
                      |||||||+|||+|||.+||.+|+.|.+++. .+|+++|||++|||+|++....++++||||++++        .+|++++
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~~~~~~~~yFF~~~~~~~~~~~r~~R~~~~   80 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKFKGGDEEWYFFSPRKKKYPNGGRPNRVTGG   80 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHSSS-SSEEEEEEE----------S-EEETT
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhccCCCceEEEEEecccccCCcccccccccc
Confidence            899999999999999999999999998876 7999999999999999954444667999999996        4578899


Q ss_pred             cEEeeccccceEECCCCeEEEEEEEEEeeecCCCCCCccCeEEEEEEeC
Q 045827          123 GYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVETNWIMQEYHLC  171 (227)
Q Consensus       123 G~Wk~~g~~k~I~~~~g~~iG~Kk~l~Fy~~~~~~~~kT~WvM~EY~l~  171 (227)
                      |+||.+|+.+.|.+.+|.+||+|++|+||.++.+.+.+|+|+||||+|.
T Consensus        81 G~Wk~~g~~~~i~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   81 GYWKSTGKEKPIKDPGGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             EEEEEECEEEEEEE-TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             eEEeecccccccccccceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            9999999999998878999999999999998888889999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	227
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		6e-27
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		7e-27
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		1e-25

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  117 bits (292), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 97/169 (57%), Gaps = 21/169 (12%)
Query: 50  INLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWY 109
           ++LPPGF+F PTDEEL++ +L  KA+       +I E++    DPW L  +AL     WY
Sbjct: 18  LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 77
Query: 110 FFSQIEDK--------RVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVET 161
           FFS  + K        RV G+GYWK    ++ +I++ G+++G+KK  VF +G+AP G +T
Sbjct: 78  FFSPRDRKYPNGSRPNRVAGSGYWKATGTDK-IISTEGQRVGIKKALVFYIGKAPKGTKT 136
Query: 162 NWIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCRVYEEDGNSK 210
           NWIM EY L           +R G+  L       WVLCR+Y++  +++
Sbjct: 137 NWIMHEYRLIEPS-------RRNGSTKLDD-----WVLCRIYKKQSSAQ 173

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  117 bits (292), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 97/169 (57%), Gaps = 21/169 (12%)
Query: 50  INLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWY 109
           ++LPPGF+F PTDEEL++ +L  KA+       +I E++    DPW L  +AL     WY
Sbjct: 15  LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 74
Query: 110 FFSQIEDK--------RVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVET 161
           FFS  + K        RV G+GYWK    ++ +I++ G+++G+KK  VF +G+AP G +T
Sbjct: 75  FFSPRDRKYPNGSRPNRVAGSGYWKATGTDK-IISTEGQRVGIKKALVFYIGKAPKGTKT 133
Query: 162 NWIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCRVYEEDGNSK 210
           NWIM EY L           +R G+  L       WVLCR+Y++  +++
Sbjct: 134 NWIMHEYRLIEPS-------RRNGSTKLDD-----WVLCRIYKKQSSAQ 170

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 88/162 (54%), Gaps = 16/162 (9%)
Query: 50  INLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWY 109
           +NLPPGF+F PTD+ELV H+L  KA+       II E++    DPW L  RAL     WY
Sbjct: 13  LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWY 72
Query: 110 FFSQIEDK--------RVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVET 161
           FF+  + K        R  GNGYWK    ++PV    G+ +G+KK  VF  G+AP GV+T
Sbjct: 73  FFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVA-PRGRTLGIKKALVFYAGKAPRGVKT 131
Query: 162 NWIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCRVY 203
           +WIM EY L   G +A  +          S     WVLCR+Y
Sbjct: 132 DWIMHEYRLADAGRAAAGA-------KKGSLRLDDWVLCRLY 166
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	227
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	7e-61
1ut7_A	171	No apical meristem protein; transcription regulati	2e-60

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  187 bits (478), Expect = 7e-61
 Identities = 68/169 (40%), Positives = 91/169 (53%), Gaps = 16/169 (9%)

Query: 50  INLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWY 109
           +NLPPGF+F PTD+ELV H+L  KA+       II E++    DPW L  RAL     WY
Sbjct: 13  LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWY 72

Query: 110 FFSQIEDK--------RVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVET 161
           FF+  + K        R  GNGYWK    ++P +   G+ +G+KK  VF  G+AP GV+T
Sbjct: 73  FFTPRDRKYPNGSRPNRAAGNGYWKATGADKP-VAPRGRTLGIKKALVFYAGKAPRGVKT 131

Query: 162 NWIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCRVYEEDGNSK 210
           +WIM EY L   G +A  + K        S     WVLCR+Y +    +
Sbjct: 132 DWIMHEYRLADAGRAAAGAKK-------GSLRLDDWVLCRLYNKKNEWE 173

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  186 bits (474), Expect = 2e-60
 Identities = 61/169 (36%), Positives = 92/169 (54%), Gaps = 21/169 (12%)

Query: 50  INLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWY 109
           ++LPPGF+F PTDEEL++ +L  KA+       +I E++    DPW L  +AL     WY
Sbjct: 15  LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 74

Query: 110 FFSQIEDK--------RVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVET 161
           FFS  + K        RV G+GYWK    ++  I++ G+++G+KK  VF +G+AP G +T
Sbjct: 75  FFSPRDRKYPNGSRPNRVAGSGYWKATGTDKI-ISTEGQRVGIKKALVFYIGKAPKGTKT 133

Query: 162 NWIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCRVYEEDGNSK 210
           NWIM EY L         +                WVLCR+Y++  +++
Sbjct: 134 NWIMHEYRLIEPSRRNGSTKLD------------DWVLCRIYKKQSSAQ 170

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	227
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=5.7e-52  Score=346.60  Aligned_cols=150  Identities=45%  Similarity=0.885  Sum_probs=130.4

Q ss_pred             CCCCCceeEcCCHHHHHHHHhhhhhhCCCCCCCceeeCCCCCCCCCCcccccccCCCeEEEEeecc--------CCcccc
Q 045827           50 INLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWYFFSQIE--------DKRVTG  121 (227)
Q Consensus        50 ~~LPpGfRF~PTDeELI~~YL~~Ki~g~pl~~~~I~~~DVy~~~P~eLp~~~~~~~~~wyFFs~~~--------~~R~~~  121 (227)
                      +.|||||||+|||||||.|||++|+.|.+++.++|+++|||.+|||+||+....++.+||||+++.        .+|+++
T Consensus        13 ~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR~t~   92 (174)
T 3ulx_A           13 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAG   92 (174)
T ss_dssp             TTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCEEET
T ss_pred             cCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCceeecC
Confidence            799999999999999999999999999999999999999999999999998877788999999985        478999


Q ss_pred             CcEEeeccccceEECCCCeEEEEEEEEEeeecCCCCCCccCeEEEEEEeCCCCCCCcccccccCCcccccCCCCcEEEEE
Q 045827          122 NGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVETNWIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCR  201 (227)
Q Consensus       122 ~G~Wk~~g~~k~I~~~~g~~iG~Kk~l~Fy~~~~~~~~kT~WvM~EY~l~~~~~~~~~~~~~~~~~~l~~~~~~~~VLCk  201 (227)
                      +|+||++|++++|.. +|.+||+||+|+||.++++++.+|+|+||||+|.......  +....+.     ...++|||||
T Consensus        93 ~G~WkatG~dk~I~~-~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~--~~~~~~~-----~~~~~wVlCr  164 (174)
T 3ulx_A           93 NGYWKATGADKPVAP-RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAA--AGAKKGS-----LRLDDWVLCR  164 (174)
T ss_dssp             TEEEEECSCCEEECC-SSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC------------------CCSSEEEEE
T ss_pred             CceEccCCCCcEEee-CCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcc--cccccCC-----CCCCCEEEEE
Confidence            999999999999966 5899999999999999999999999999999999885431  0011111     3468999999


Q ss_pred             EEEecC
Q 045827          202 VYEEDG  207 (227)
Q Consensus       202 Iy~k~~  207 (227)
                      ||+|++
T Consensus       165 vf~K~~  170 (174)
T 3ulx_A          165 LYNKKN  170 (174)
T ss_dssp             EEESCC
T ss_pred             EEEcCC
Confidence            999986

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=3.1e-51  Score=341.46  Aligned_cols=147  Identities=41%  Similarity=0.861  Sum_probs=128.6

Q ss_pred             CCCCCceeEcCCHHHHHHHHhhhhhhCCCCCCCceeeCCCCCCCCCCcccccccCCCeEEEEeecc--------CCcccc
Q 045827           50 INLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWYFFSQIE--------DKRVTG  121 (227)
Q Consensus        50 ~~LPpGfRF~PTDeELI~~YL~~Ki~g~pl~~~~I~~~DVy~~~P~eLp~~~~~~~~~wyFFs~~~--------~~R~~~  121 (227)
                      +.|||||||+|||||||.|||++|+.|.+++.++|+++|||.+|||+||+....++.+||||+++.        .+|+++
T Consensus        15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R~t~   94 (171)
T 1ut7_A           15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAG   94 (171)
T ss_dssp             SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEEET
T ss_pred             cCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcccccCC
Confidence            689999999999999999999999999999999999999999999999998877889999999985        578999


Q ss_pred             CcEEeeccccceEECCCCeEEEEEEEEEeeecCCCCCCccCeEEEEEEeCCCCCCCcccccccCCcccccCCCCcEEEEE
Q 045827          122 NGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVETNWIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCR  201 (227)
Q Consensus       122 ~G~Wk~~g~~k~I~~~~g~~iG~Kk~l~Fy~~~~~~~~kT~WvM~EY~l~~~~~~~~~~~~~~~~~~l~~~~~~~~VLCk  201 (227)
                      +|+||++|+++.|.. +|.+||+||+|+||.++++++.+|+|+||||+|.......       +.     ...++|||||
T Consensus        95 ~G~Wk~tG~~k~I~~-~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~-------~~-----~~~~~~VlCr  161 (171)
T 1ut7_A           95 SGYWKATGTDKIIST-EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRN-------GS-----TKLDDWVLCR  161 (171)
T ss_dssp             TEEEEEEEEEEEEEE-TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------------------CCEEEEE
T ss_pred             CCEEeccCCCceEEe-cCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcccc-------Cc-----ccCCCEEEEE
Confidence            999999999999976 5799999999999999999999999999999999875211       11     2458999999


Q ss_pred             EEEecCCC
Q 045827          202 VYEEDGNS  209 (227)
Q Consensus       202 Iy~k~~~~  209 (227)
                      ||+|+...
T Consensus       162 v~~k~~~~  169 (171)
T 1ut7_A          162 IYKKQSSA  169 (171)
T ss_dssp             EEECC---
T ss_pred             EEEcCCCC
Confidence            99998644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	227
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	5e-44

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  143 bits (362), Expect = 5e-44
 Identities = 60/162 (37%), Positives = 86/162 (53%), Gaps = 21/162 (12%)

Query: 50  INLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWY 109
           ++LPPGF+F PTDEEL++ +L  KA+       +I E++    DPW L  +AL     WY
Sbjct: 15  LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 74

Query: 110 FFSQIE--------DKRVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVET 161
           FFS  +          RV G+GYWK     + +I++ G+++G+KK  VF +G+AP G +T
Sbjct: 75  FFSPRDRKYPNGSRPNRVAGSGYWKATG-TDKIISTEGQRVGIKKALVFYIGKAPKGTKT 133

Query: 162 NWIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCRVY 203
           NWIM EY L         +                WVLCR+Y
Sbjct: 134 NWIMHEYRLIEPSRRNGSTKLD------------DWVLCRIY 163

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	227
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.5e-50  Score=331.25  Aligned_cols=145  Identities=41%  Similarity=0.868  Sum_probs=127.5

Q ss_pred             CCCCCCceeEcCCHHHHHHHHhhhhhhCCCCCCCceeeCCCCCCCCCCcccccccCCCeEEEEeecc--------CCccc
Q 045827           49 TINLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWYFFSQIE--------DKRVT  120 (227)
Q Consensus        49 ~~~LPpGfRF~PTDeELI~~YL~~Ki~g~pl~~~~I~~~DVy~~~P~eLp~~~~~~~~~wyFFs~~~--------~~R~~  120 (227)
                      .++|||||||+|||||||.|||.+|+.|.|++.++|+++|||.+|||+||+....++++||||++++        .+|++
T Consensus        14 ~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~~~~~wyFft~~~~k~~~g~r~~R~~   93 (166)
T d1ut7a_          14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVA   93 (166)
T ss_dssp             SSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEEE
T ss_pred             cccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhccCcceEEEEeeeccccCCCCcccccc
Confidence            3799999999999999999999999999999999999999999999999998777788999999986        46789


Q ss_pred             cCcEEeeccccceEECCCCeEEEEEEEEEeeecCCCCCCccCeEEEEEEeCCCCCCCcccccccCCcccccCCCCcEEEE
Q 045827          121 GNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVETNWIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLC  200 (227)
Q Consensus       121 ~~G~Wk~~g~~k~I~~~~g~~iG~Kk~l~Fy~~~~~~~~kT~WvM~EY~l~~~~~~~~~~~~~~~~~~l~~~~~~~~VLC  200 (227)
                      ++|+||++|+++.|.+ +|.+||+|++|+||.++++++.+|+|+||||+|.+.....       +.     ...++||||
T Consensus        94 g~G~Wk~~g~~~~i~~-~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~-------~~-----~~~~~~VLC  160 (166)
T d1ut7a_          94 GSGYWKATGTDKIIST-EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRN-------GS-----TKLDDWVLC  160 (166)
T ss_dssp             TTEEEEEEEEEEEEEE-TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------------------CCEEEE
T ss_pred             CCCEecccCCCceEec-CCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCccccc-------Cc-----cccCCEEEE
Confidence            9999999999998865 7899999999999999999999999999999999875432       11     346899999


Q ss_pred             EEEEec
Q 045827          201 RVYEED  206 (227)
Q Consensus       201 kIy~k~  206 (227)
                      |||+|+
T Consensus       161 rI~~Kk  166 (166)
T d1ut7a_         161 RIYKKQ  166 (166)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            999984