Citrus Sinensis ID: 045837

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------
Protein Sequence
MQVVGCLVLFSLICSSFSSFSFALSDAEAAFLVRRQLLTLPQDGKLPDNIENEKHMLLSKHSRRPYIRTRLTRQGNWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWATTCSPVVSNPVDCSKDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP
Secondary Structure (PSIPRED)
cccccccHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccccccHHccccccccccccccHHcccccccccccccccccccccccccccccccEEEcccccEEEcccccccccccccccccccccccccccHHHcccccccEEEcccccccccccHHccccccccEEEccccccEEcccHHHHcccccEEEccccEEEEcccccccccccccEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEccccccccccccccHcccccccEEEEcccccccccccHcccccEEEcccccccccccHHHcccccccEEEccccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHccccEEEEEEccccccccccHHHcccccEEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MQVVGCLVLFSLICSSFSSFSFALSDAEAAFLVRRQLltlpqdgklpdnieNEKHMLLskhsrrpyirtrltrqgnwvgtdvcsyygvfcapapdnsnitVVAGIDlngndiagyfpaelgwlsdlALFHvnsnrfcgiipeslsNWKLIYEfdvsnnrlvgsfpnvcLSWTSLRYldlrynnfegevpRELFKMKLDAIFLnnnrfsswipetigeSTVSVVTFAHnnfsgcvprsignmpnvneiilsnndlmgclpseigwlkkltvfdassnsfygsvpqsfsSLESIHRLVLSYNQLtgyvseqicklpninnftFSYNYFQglgnecipgskeggvfddtsnclaqrpsqkwattcspvvsnpvdcskdvclgggsppsapstppkpstptptpapeqrtptpapptpsppppptpkpltpvptplppvnspnppprnwrvrshtppqpwrpsapapepskpllppvqyppssvqstpppsplpqspppppsvkypppvqspppptpvqsppppvhspppp
Flexible Loop (DISEMBL)
MQVVGCLVLFSLICSSFSSFSFALSDAEAAFLVRRQLLTlpqdgklpdniENEKHmllskhsrrpyirtrltrqgnwvgTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAqrpsqkwattcspVVSNPVDCSKDVCLGGGSppsapstppkpSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPptpvqsppppvhspppp
Low Complexity Region (SEG)
MQVVGClvlfslicssfssfsfalsdaeaaflVRRQLLTLPQDGKLPDNIENEKHMLLSKHSRRPYIRTRLTRQGNWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWATTCSPVVSNPVDCSKDVCLGGGsppsapstppkpstptptpapeqrtptpapptpsppppptpkpltpvptplppvnspnppprNWRVRSHTppqpwrpsapapepskpllppvqyppssvqstpppsplpqspppppsvkypppvqspppptpvqsppppvhspppp
Disordered region (IsUnstruct)
**VVGCLVLFSLICSSFSSFSFALSDAEAAFLVRRQLLTLPQ*********************RPYIRTRLTRQGNWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWATTCSPVVSNPVDCSKDVCL*****************************************************************************************************************************************************
Disordered Region (DISOPRED)
MQVVGCLVLFSLICSSFSSFSFALSDAEAAFLVRRQLLTLPQDGKLPDNIENEKHMLLSKHSRRPYIRTRLTRQGNWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWATTCSPVVSNPVDCSKD********************************************************************************************************************************************************
Disordered Region (DISEMBL)
MQVVGCLVLFSLICSSFSSFSFALSDAEAAFLVRRQLLTLPQDGKLPDNIENEKHMLLSKHSRRPYIRTRLTRQGNWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWATTCSPVVSNPVDCSKDVCLGG******************************************KPLTPVPTPLPPVNSPNPPPRNW********************SKPLLPPV******************************************************
Disordered Region (DISPRO)
**VVGCLVLFSLICSSFSSFSFALSDAEAAFLVRRQLLTLPQDGKLPDNIENEKHMLLSKHSRRPYIRTRLTRQGNWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWATTCSPVVSNPVDCSKDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAP**SKPLLPPV******************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQVVGCLVLFSLICSSFSSFSFALSDAEAAFLVRRQLLTLPQDGKLPDNIENEKHMLLSKHSRRPYIRTRLTRQGNWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWATTCSPVVSNPVDCSKDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	527	2.2.26 [Sep-21-2011]
O81765	699	Pollen-specific leucine-r	yes	no	0.861	0.649	0.534	1e-135
Q9LJ64	956	Pollen-specific leucine-r	no	no	0.707	0.390	0.591	1e-135
Q9XIL9	727	Pollen-specific leucine-r	no	no	0.747	0.541	0.544	1e-129
Q9XIB6	847	Pollen-specific leucine-r	no	no	0.910	0.566	0.474	1e-122
Q9LHF1	494	Leucine-rich repeat exten	no	no	0.664	0.708	0.471	3e-92
Q9SN46	857	Leucine-rich repeat exten	no	no	0.688	0.423	0.464	2e-91
Q9T0K5	760	Leucine-rich repeat exten	no	no	0.666	0.461	0.470	8e-91
O65375	744	Leucine-rich repeat exten	no	no	0.588	0.416	0.514	3e-87
O48809	786	Leucine-rich repeat exten	no	no	0.588	0.394	0.511	1e-86
Q9LUI1	470	Leucine-rich repeat exten	no	no	0.565	0.634	0.486	3e-80

>sp|O81765|PLRX4_ARATH Pollen-specific leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana GN=PEX4 PE=2 SV=1

 Score =  483 bits (1244), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 259/485 (53%), Positives = 322/485 (66%), Gaps = 31/485 (6%)

Query: 23  ALSDAEAAFLVRRQLLTLPQDGKLPDNIENE---KHMLLSKHSRRPYIRTRLTRQ----- 74
           AL+D EAAF+V+RQLLTLP +G+LPD+IE E   K    +   +R YI  +  ++     
Sbjct: 44  ALTDTEAAFIVQRQLLTLPDNGELPDDIEYEVDLKATFANTRLKRAYIALQAWKKAIFSD 103

Query: 75  -----GNWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALF 129
                GNW G  VC Y GV CAPA D+S++TVVAG+DLNG DIAG+ PAELG ++D+A+F
Sbjct: 104 PFNTTGNWHGPHVCGYTGVVCAPALDDSDVTVVAGVDLNGADIAGHLPAELGLMTDVAMF 163

Query: 130 HVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVP 189
           H+NSNRFCGIIP+S    KL++EFDVSNNR VG FPNV LSW  ++Y DLR+N+FEG+VP
Sbjct: 164 HLNSNRFCGIIPKSFEKLKLMHEFDVSNNRFVGPFPNVVLSWPDVKYFDLRFNDFEGQVP 223

Query: 190 RELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIIL 249
            ELFK +LDAIFLN+NRF+S IPE++GES  SVVTFA+N F+GC+P+SIGNM N+NEI+ 
Sbjct: 224 PELFKKELDAIFLNDNRFTSVIPESLGESPASVVTFANNKFTGCIPKSIGNMKNLNEIVF 283

Query: 250 SNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQ 309
            +NDL GC PSEIG L  +TVFDAS NSF G +P SF  L S+  + +S N+LTG V   
Sbjct: 284 MDNDLGGCFPSEIGKLSNVTVFDASKNSFIGRLPTSFVGLTSVEEIDISGNKLTGLVPHN 343

Query: 310 ICKLPNINNFTFSYNYFQGLGNECIP-GSKEGGVFDDTSNCLAQRPSQKWATTCSPVVSN 368
           IC+LPN+ N T+SYNYF G G  C+P GS++    DDT NCLA RP Q+ A  C+ V++ 
Sbjct: 344 ICQLPNLVNLTYSYNYFSGQGGSCVPGGSRKEIALDDTRNCLASRPEQRSAQECAVVINR 403

Query: 369 PVDCSKDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPV 428
           PVDCSKD C GG S PS PS   KP TP PT    + TP P  P   P P PT     P 
Sbjct: 404 PVDCSKDKCAGGSSTPSKPSPVHKP-TPVPTTPVHKPTPVPTTPVQKPSPVPTTPVQKPS 462

Query: 429 PTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSP 488
           P P  PV+ P+P          TP        P+P PS+    PVQ P    +S  P  P
Sbjct: 463 PVPTTPVHEPSP-------VLATPVD-----KPSPVPSR----PVQKPQPPKESPQPDDP 506

Query: 489 LPQSP 493
             QSP
Sbjct: 507 YDQSP 511

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJ64|PLRX1_ARATH Pollen-specific leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana GN=PEX1 PE=2 SV=1

 Score =  481 bits (1237), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 229/387 (59%), Positives = 282/387 (72%), Gaps = 14/387 (3%)

Query: 5   GC-LVLFSLICSSFSSFSFALSDAEAAFLVRRQLLTLPQDGKLPDNIENEKHMLL---SK 60
           GC L+LF    S F   + AL+D EA+FL RRQLL L ++G LPD+IE E  + L   + 
Sbjct: 11  GCFLLLFCFTISIFFYSAAALTDEEASFLTRRQLLALSENGDLPDDIEYEVDLDLKFANN 70

Query: 61  HSRRPYIRTRLTRQG----------NWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGN 110
             +R YI  +  ++           NWVG DVCSY GVFCAPA D+ ++ VVAGIDLN  
Sbjct: 71  RLKRAYIALQAWKKAFYSDPFNTAANWVGPDVCSYKGVFCAPALDDPSVLVVAGIDLNHA 130

Query: 111 DIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLS 170
           DIAGY P ELG L+D+ALFHVNSNRFCG+IP+SLS   L+YEFDVSNNR VG FP V LS
Sbjct: 131 DIAGYLPPELGLLTDVALFHVNSNRFCGVIPKSLSKLTLMYEFDVSNNRFVGPFPTVALS 190

Query: 171 WTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNF 230
           W SL++LD+RYN+FEG++P E+F   LDAIFLNNNRF S IPETIG+ST SVVTFAHN F
Sbjct: 191 WPSLKFLDIRYNDFEGKLPPEIFDKDLDAIFLNNNRFESTIPETIGKSTASVVTFAHNKF 250

Query: 231 SGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLE 290
           SGC+P++IG M N+NEI+   N+L GCLP+EIG L  +TVFDASSN F GS+P + S L 
Sbjct: 251 SGCIPKTIGQMKNLNEIVFIGNNLSGCLPNEIGSLNNVTVFDASSNGFVGSLPSTLSGLA 310

Query: 291 SIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCL 350
           ++ ++  SYN+ TG+V++ ICKLP ++NFTFSYN+F G    C+PGS +   FDDTSNCL
Sbjct: 311 NVEQMDFSYNKFTGFVTDNICKLPKLSNFTFSYNFFNGEAQSCVPGSSQEKQFDDTSNCL 370

Query: 351 AQRPSQKWATTCSPVVSNPVDCSKDVC 377
             RP+QK A  C PVVS PVDCSKD C
Sbjct: 371 QNRPNQKSAKECLPVVSRPVDCSKDKC 397

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIL9|PLRX3_ARATH Pollen-specific leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana GN=PEX3 PE=2 SV=1

 Score =  462 bits (1188), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/415 (54%), Positives = 291/415 (70%), Gaps = 21/415 (5%)

Query: 17  FSSFSFALSDAEAAFLVRRQLLTLPQDGKLPDNIENE---KHMLLSKHSRRPYIRTRLTR 73
           F  F   L+DAE +F+ +RQLLTLP++G+LPD+IE E   K    +   +R YI  +  +
Sbjct: 12  FQGFVPTLTDAEVSFIAQRQLLTLPENGELPDDIEYEVDLKVTFANHRLKRAYIALQAWK 71

Query: 74  Q----------GNWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWL 123
           +          GNW G  VC Y GVFCAPA D+ ++ VVAG+DLNG DIAG+ PAELG +
Sbjct: 72  KAVYSDPFNTTGNWHGPHVCGYTGVFCAPALDDPDVAVVAGVDLNGADIAGHLPAELGLM 131

Query: 124 SDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNN 183
           +D+A+FH+NSNRFCGIIP+S     L++EFDVSNNR VG FP+V LSW +++++D+RYN+
Sbjct: 132 TDVAMFHLNSNRFCGIIPKSFEKLSLMHEFDVSNNRFVGPFPSVVLSWPAVKFIDVRYND 191

Query: 184 FEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPN 243
           FEG+VP ELFK  LDAIFLNNNRF+S IP+++GES+ SVVTFAHN FSGC+PRSIGNM N
Sbjct: 192 FEGQVPPELFKKDLDAIFLNNNRFTSTIPDSLGESSASVVTFAHNKFSGCIPRSIGNMKN 251

Query: 244 VNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLT 303
           +NEII  +N L GC PSEIG L  + VFDAS NSF G +P SF  L S+    +S N+LT
Sbjct: 252 LNEIIFKDNSLGGCFPSEIGKLANVNVFDASMNSFTGVLPPSFVGLTSMEEFDISGNKLT 311

Query: 304 GYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWATTCS 363
           G++ E ICKLP + N T++YNYF G G+ C+PGS++    DDT NCL  RP Q+ A  C+
Sbjct: 312 GFIPENICKLPKLVNLTYAYNYFNGQGDSCVPGSQKQIALDDTRNCLPDRPKQRSAKECA 371

Query: 364 PVVSNPVDCSKDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPP 418
            V+S PVDCSKD C GG    S+ +TP K    +P+P P +    P PP  SP P
Sbjct: 372 VVISRPVDCSKDKCAGG----SSQATPSK----SPSPVPTRPVHKPQPPKESPQP 418

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIB6|PLRX2_ARATH Pollen-specific leucine-rich repeat extensin-like protein 2 OS=Arabidopsis thaliana GN=PEX2 PE=1 SV=1

 Score =  440 bits (1132), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 256/540 (47%), Positives = 324/540 (60%), Gaps = 60/540 (11%)

Query: 5   GCLVLFSLIC-SSFSSFSFALSDAEAAFLVRRQLLTLPQDGKLPDNIENEKHMLLSKHSR 63
           GC  +  LI  +  ++F    S  E A L +          K+  N++ E   L     +
Sbjct: 6   GCFFILLLISYTVVATFDDEPSFPENADLTKDLEQKCFSINKVDPNLKFENDRL-----K 60

Query: 64  RPYIRTRLTRQG----------NWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIA 113
           R YI  +  ++           NWVG+DVCSY GV+CAPA D+ ++TVVAG+DLN  DIA
Sbjct: 61  RAYIALQAWKKAIYSDPFKTTANWVGSDVCSYNGVYCAPALDDDSLTVVAGVDLNHADIA 120

Query: 114 GYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTS 173
           G+ P ELG ++DLALFH+NSNRFCGIIP+SLS   L+YEFDVSNNR VG FP V LSW S
Sbjct: 121 GHLPPELGLMTDLALFHINSNRFCGIIPKSLSKLALMYEFDVSNNRFVGQFPEVSLSWPS 180

Query: 174 LRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGC 233
           L++LDLRYN FEG +P E+F   LDAIFLNNNRF S IP TIG+S  SVVTFA+N FSGC
Sbjct: 181 LKFLDLRYNEFEGSLPSEIFDKDLDAIFLNNNRFESVIPGTIGKSKASVVTFANNKFSGC 240

Query: 234 VPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIH 293
           +P+SIGNM N+NEI+ + N+L GC P+EIG L  +TVFDAS N F GS+P + S L S+ 
Sbjct: 241 IPKSIGNMKNLNEIVFTGNNLTGCFPNEIGLLNNVTVFDASKNGFVGSLPSTLSGLASVE 300

Query: 294 RLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQR 353
           +L LS+N+LTG+V ++ CKLPN+++F FSYN+F G    C+PG   G  FDDT+NCL  R
Sbjct: 301 QLDLSHNKLTGFVVDKFCKLPNLDSFKFSYNFFNGEAESCVPGRNNGKQFDDTNNCLQNR 360

Query: 354 PSQKWATTCSPVVSNPVDCSKDVCLGGGSPPSAP------STPPKPSTPTPT-PAPEQRT 406
           PSQK A  C PVVS PVDCSKD C GG +  S+P      ++ PKPS P P  P P   +
Sbjct: 361 PSQKPAKQCLPVVSRPVDCSKDKCSGGSNGGSSPSPNPPRTSEPKPSKPEPVMPKPSDSS 420

Query: 407 PTPAPPT---------------PSPPPPPTPKPL-----TPVPTPLPPVNSPNPPPRNWR 446
               P T               P P  P     L     +P P P  P +SP P     +
Sbjct: 421 KPETPKTPEQPSPKPQPPKHESPKPEEPENKHELPKQKESPKPQPSKPEDSPKP----EQ 476

Query: 447 VRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSP------PPPPSVK 500
            +    P+P +P    PEP+KP+      PP+  Q   P  P   SP      PPPP V+
Sbjct: 477 PKPEESPKPEQPQ--IPEPTKPV-----SPPNEAQGPTPDDPYDASPVKNRRSPPPPKVE 529

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHF1|LRX4_ARATH Leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana GN=LRX4 PE=1 SV=1

 Score =  339 bits (870), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 173/367 (47%), Positives = 229/367 (62%), Gaps = 17/367 (4%)

Query: 24  LSDAEAAFLVRRQLLTLPQD-GKLPDNIENEKHMLLSK-HSRRPYIRTRLTRQG------ 75
           LSD E  F+ RRQLL    + G   +N+  +  ++      R  YI  +  +Q       
Sbjct: 34  LSDTEVRFIQRRQLLYYRDEFGDRGENVTVDPSLIFENPRLRSAYIALQAWKQAILSDPN 93

Query: 76  ----NWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHV 131
               NW+G++VC+Y GVFC+ A DN  I  VAGIDLN  DIAGY P ELG L+DLALFHV
Sbjct: 94  NITVNWIGSNVCNYTGVFCSKALDNRKIRTVAGIDLNHADIAGYLPEELGLLTDLALFHV 153

Query: 132 NSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRE 191
           NSNRFCG +P      KL++E D+SNNR  G FP V L   SL++LDLR+N FEG VP+E
Sbjct: 154 NSNRFCGTVPHKFKQLKLLFELDLSNNRFAGKFPTVVLHLPSLKFLDLRFNEFEGTVPKE 213

Query: 192 LFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSN 251
           LF   LDAIF+N+NRF   +PE  G+S VSV+  A+N+F GC+P S+  M N+NEII  N
Sbjct: 214 LFSKNLDAIFINHNRFRFELPENFGDSPVSVIVLANNHFHGCIPTSLVEMKNLNEIIFMN 273

Query: 252 NDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQIC 311
           N L  CLP++IG LK +TVFD S N   G +P+S   +  + +L +++N L+G +   IC
Sbjct: 274 NGLNSCLPADIGRLKNVTVFDVSFNELVGPLPESVGGMVEVEQLNVAHNLLSGKIPASIC 333

Query: 312 KLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWATTCSPVVSNP-V 370
           +LP + NFT+SYN+F G    C+  S+    FDD  NCL  RP+Q+ +  CS  +S P V
Sbjct: 334 QLPKLENFTYSYNFFTGEAPVCLRLSE----FDDRRNCLPGRPAQRSSRQCSAFLSRPSV 389

Query: 371 DCSKDVC 377
           DC    C
Sbjct: 390 DCGSFGC 396

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN46|LRX5_ARATH Leucine-rich repeat extensin-like protein 5 OS=Arabidopsis thaliana GN=LRX5 PE=2 SV=2

 Score =  337 bits (863), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 179/385 (46%), Positives = 238/385 (61%), Gaps = 22/385 (5%)

Query: 9   LFSLICSSFS-SFSFALSDAEAAFLVRRQLLTLPQD-GKLPDNIENEKHMLLSK-HSRRP 65
            F+ I  S S +F+  LSD E   + +RQLL    + G   +N++ +  ++      R  
Sbjct: 22  FFTSISYSLSLTFNGDLSDNEVRLITQRQLLYFRDEFGDRGENVDVDPSLVFENPRLRNA 81

Query: 66  YIRTRLTRQG----------NWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGY 115
           YI  +  +Q           NW+G+DVCSY GV+CAPA DN  I  VAGIDLN  DIAGY
Sbjct: 82  YIALQAWKQAILSDPNNFTTNWIGSDVCSYTGVYCAPALDNRRIRTVAGIDLNHADIAGY 141

Query: 116 FPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLR 175
            P ELG L+DLALFH+NSNRFCG +P   +  KL++E D+SNNR  G FP V L   SL+
Sbjct: 142 LPQELGLLTDLALFHINSNRFCGTVPHRFNRLKLLFELDLSNNRFAGIFPTVVLQLPSLK 201

Query: 176 YLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVP 235
           +LDLR+N FEG VPRELF   LDAIF+N+NRF   +P+ +G+S VSV+  A+N+F GC+P
Sbjct: 202 FLDLRFNEFEGPVPRELFSKDLDAIFINHNRFRFELPDNLGDSPVSVIVVANNHFHGCIP 261

Query: 236 RSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRL 295
            S+G+M N+ EII   N    CLPS+IG LK +TVFD S N   GS+P S   + S+ +L
Sbjct: 262 TSLGDMRNLEEIIFMENGFNSCLPSQIGRLKNVTVFDFSFNELVGSLPASIGGMVSMEQL 321

Query: 296 VLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNEC--IPGSKEGGVFDDTSNCLAQR 353
            +++N+ +G +   IC+LP + NFTFSYN+F G    C  +PG      FDD  NCL  R
Sbjct: 322 NVAHNRFSGKIPATICQLPRLENFTFSYNFFTGEPPVCLGLPG------FDDRRNCLPAR 375

Query: 354 PSQKWATTCSPVVSN-PVDCSKDVC 377
           P+Q+    C+   S  PVDC    C
Sbjct: 376 PAQRSPGQCAAFSSLPPVDCGSFGC 400

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9T0K5|LRX3_ARATH Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana GN=LRX3 PE=1 SV=1

 Score =  335 bits (858), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 178/378 (47%), Positives = 227/378 (60%), Gaps = 27/378 (7%)

Query: 16  SFSSFSFALSDAEAAFLVRRQLLTLPQDGKLPD-----NIENEKHMLLSKHSRRPYIRTR 70
           S SS    LSD E   + RRQLL   +           N EN +        R  YI  +
Sbjct: 22  SISSDGGVLSDNEVRHIQRRQLLEFAERSVKITVDPSLNFENPR-------LRNAYIALQ 74

Query: 71  LTRQG----------NWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAEL 120
             +Q           NW+G++VC+Y GVFC+PA DN  I  VAGIDLN  DIAGY P EL
Sbjct: 75  AWKQAILSDPNNFTSNWIGSNVCNYTGVFCSPALDNRKIRTVAGIDLNHADIAGYLPEEL 134

Query: 121 GWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLR 180
           G LSDLALFHVNSNRFCG +P   +  KL++E D+SNNR  G FP V L   SL++LDLR
Sbjct: 135 GLLSDLALFHVNSNRFCGTVPHRFNRLKLLFELDLSNNRFAGKFPTVVLQLPSLKFLDLR 194

Query: 181 YNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGN 240
           +N FEG VP+ELF   LDAIF+N+NRF   +PE  G+S VSV+  A+N F GCVP S+  
Sbjct: 195 FNEFEGTVPKELFSKDLDAIFINHNRFRFELPENFGDSPVSVIVLANNRFHGCVPSSLVE 254

Query: 241 MPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYN 300
           M N+NEII  NN L  CLPS+IG LK +TVFD S N   G +P+S   + S+ +L +++N
Sbjct: 255 MKNLNEIIFMNNGLNSCLPSDIGRLKNVTVFDVSFNELVGPLPESVGEMVSVEQLNVAHN 314

Query: 301 QLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWAT 360
            L+G +   IC+LP + NFT+SYN+F G    C+   +    FDD  NCL  RP+Q+   
Sbjct: 315 MLSGKIPASICQLPKLENFTYSYNFFTGEAPVCLRLPE----FDDRRNCLPGRPAQRSPG 370

Query: 361 TCSPVVSN-PVDCSKDVC 377
            C   +S  PV+C    C
Sbjct: 371 QCKAFLSRPPVNCGSFSC 388

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|O65375|LRX1_ARATH Leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana GN=LRX1 PE=1 SV=1

 Score =  323 bits (827), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 160/311 (51%), Positives = 207/311 (66%), Gaps = 1/311 (0%)

Query: 75  GNWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSN 134
            NW G+DVCSY G++CAP+P      VVAGIDLN  D+AGY  +ELG LSDLALFH+NSN
Sbjct: 74  ANWNGSDVCSYNGIYCAPSPSYPKTRVVAGIDLNHADMAGYLASELGLLSDLALFHINSN 133

Query: 135 RFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK 194
           RFCG +P + +  KL+YE D+SNNR VG FP V LS  SL++LDLRYN FEG++P +LF 
Sbjct: 134 RFCGEVPLTFNRMKLLYELDLSNNRFVGKFPKVVLSLPSLKFLDLRYNEFEGKIPSKLFD 193

Query: 195 MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNM-PNVNEIILSNND 253
            +LDAIFLN+NRF   IP+ +G S VS +  A NN  GC+P SIG M   +NE+ILSN++
Sbjct: 194 RELDAIFLNHNRFRFGIPKNMGNSPVSALVLADNNLGGCIPGSIGQMGKTLNELILSNDN 253

Query: 254 LMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKL 313
           L GCLP +IG LKK+TVFD +SN   G +P S  +++S+  L ++ N  TG +   IC+L
Sbjct: 254 LTGCLPPQIGNLKKVTVFDITSNRLQGPLPSSVGNMKSLEELHVANNAFTGVIPPSICQL 313

Query: 314 PNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWATTCSPVVSNPVDCS 373
            N+ NFT+S NYF G    C        V + T NC+     Q+    CS +++ PVDCS
Sbjct: 314 SNLENFTYSSNYFSGRPPICAASLLADIVVNGTMNCITGLARQRSDKQCSSLLARPVDCS 373

Query: 374 KDVCLGGGSPP 384
           K  C    SPP
Sbjct: 374 KFGCYNIFSPP 384

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization. Together with LRX2, component of the extracellular mechanism regulating root hair morphogenesis and elongation.

Arabidopsis thaliana (taxid: 3702)

>sp|O48809|LRX2_ARATH Leucine-rich repeat extensin-like protein 2 OS=Arabidopsis thaliana GN=LRX2 PE=1 SV=1

 Score =  320 bits (821), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 159/311 (51%), Positives = 209/311 (67%), Gaps = 1/311 (0%)

Query: 75  GNWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSN 134
            NW G+DVCSY G+FCAP+P +    VVAGIDLN  D+AGY P ELG L+DLALFH+NSN
Sbjct: 76  ANWNGSDVCSYNGIFCAPSPSSPKTRVVAGIDLNHADMAGYLPRELGLLTDLALFHLNSN 135

Query: 135 RFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK 194
           RFCG +P +  + KL++E D+SNNR VG FPNV LS  SL++LDLRYN FEG +P +LF 
Sbjct: 136 RFCGEVPLTFKHMKLLFELDLSNNRFVGKFPNVVLSLPSLKFLDLRYNEFEGSIPSKLFD 195

Query: 195 MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNM-PNVNEIILSNND 253
            +LDAIFLN+NRF   IPE +G S VS +  A N+  GC+P SIG M   +NEIILSN++
Sbjct: 196 KELDAIFLNHNRFMFGIPENMGNSPVSALVLADNDLGGCIPGSIGLMGKTLNEIILSNDN 255

Query: 254 LMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKL 313
           L GCLP +IG LK +TVFD S N   G +P S  +++S+ +L ++ N+ TG +   IC+L
Sbjct: 256 LTGCLPPQIGNLKNVTVFDISFNRLSGPLPSSIGNMKSLEQLNVANNRFTGVIPSSICQL 315

Query: 314 PNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWATTCSPVVSNPVDCS 373
            N+ NFT+S N+F G    C+    +  V + + NC+  +  Q+ +  CS   S  VDCS
Sbjct: 316 SNLENFTYSSNFFTGDAPRCVALLGDNVVVNGSMNCIDGKEDQRSSKECSSPASRSVDCS 375

Query: 374 KDVCLGGGSPP 384
           K  C    SPP
Sbjct: 376 KFGCNNFFSPP 386

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization. Together with LRX2, component of the extracellular mechanism regulating root hair morphogenesis and elongation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUI1|LRX6_ARATH Leucine-rich repeat extensin-like protein 6 OS=Arabidopsis thaliana GN=LRX6 PE=2 SV=1

 Score =  300 bits (767), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 148/304 (48%), Positives = 206/304 (67%), Gaps = 6/304 (1%)

Query: 76  NWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNR 135
           NW G +VC+Y GVFCAPA DN  +  VAGIDLN  +IAGY P ELG L+DLALFH+NSNR
Sbjct: 75  NWCGPNVCNYTGVFCAPALDNPYVLTVAGIDLNHANIAGYLPLELGLLTDLALFHINSNR 134

Query: 136 FCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM 195
           F G +P++L    L++E DVSNN+L G FP+V  S  SL++LD+R+N F+G+VP +LF +
Sbjct: 135 FQGQLPKTLKCLHLLHELDVSNNKLSGEFPSVIFSLPSLKFLDIRFNEFQGDVPSQLFDL 194

Query: 196 KLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSG-CVPRSIGNM-PNVNEIILSNND 253
            LDA+F+N+N+F   +P  IG S VSV+  A+N+  G CVP S   M   ++EII++N+ 
Sbjct: 195 NLDALFINDNKFQFRLPRNIGNSPVSVLVLANNDLQGSCVPPSFYKMGKTLHEIIITNSQ 254

Query: 254 LMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKL 313
           L GCL  EIG L +LTVFD S N+  GS+P++   ++S+ +L +++N+ +GY+ E IC+L
Sbjct: 255 LTGCLNREIGLLNQLTVFDVSYNNLVGSLPETIGDMKSLEQLNIAHNKFSGYIPESICRL 314

Query: 314 PNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWATTCSPVVSNPVDCS 373
           P + NFT+SYN+F G    C+   +    FDD  NCL  RP Q+    C    S P+DC+
Sbjct: 315 PRLENFTYSYNFFSGEPPACLRLQE----FDDRRNCLPSRPMQRSLAECKSFSSYPIDCA 370

Query: 374 KDVC 377
              C
Sbjct: 371 SFGC 374

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	527
15235186	699	Pollen-specific leucine-rich repeat exte	0.861	0.649	0.534	1e-134
30685162	956	Pollen-specific leucine-rich repeat exte	0.707	0.390	0.591	1e-133
20259488	712	unknown protein [Arabidopsis thaliana]	0.707	0.523	0.591	1e-132
297836208	740	predicted protein [Arabidopsis lyrata su	0.743	0.529	0.553	1e-128
297834816	927	hypothetical protein ARALYDRAFT_479420 [	0.795	0.451	0.506	1e-127
15226640	727	Pollen-specific leucine-rich repeat exte	0.747	0.541	0.544	1e-127
224103499	711	predicted protein [Populus trichocarpa]	0.722	0.535	0.588	1e-126
224123244	499	predicted protein [Populus trichocarpa]	0.669	0.707	0.590	1e-123
297798516	668	hypothetical protein ARALYDRAFT_491276 [	0.702	0.553	0.575	1e-122
15222149	847	Pollen-specific leucine-rich repeat exte	0.910	0.566	0.474	1e-121

>gi|15235186|ref|NP_195123.1| Pollen-specific leucine-rich repeat extensin-like protein 4 [Arabidopsis thaliana] gi|75318791|sp|O81765.1|PLRX4_ARATH RecName: Full=Pollen-specific leucine-rich repeat extensin-like protein 4; Short=AtPEX4; Short=Pollen-specific LRR/EXTENSIN4; AltName: Full=Cell wall hydroxyproline-rich glycoprotein; Flags: Precursor gi|3297821|emb|CAA19879.1| extensin-like protein [Arabidopsis thaliana] gi|7270346|emb|CAB80114.1| extensin-like protein [Arabidopsis thaliana] gi|332660902|gb|AEE86302.1| Pollen-specific leucine-rich repeat extensin-like protein 4 [Arabidopsis thaliana]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 259/485 (53%), Positives = 322/485 (66%), Gaps = 31/485 (6%)

Query: 23  ALSDAEAAFLVRRQLLTLPQDGKLPDNIENE---KHMLLSKHSRRPYIRTRLTRQ----- 74
           AL+D EAAF+V+RQLLTLP +G+LPD+IE E   K    +   +R YI  +  ++     
Sbjct: 44  ALTDTEAAFIVQRQLLTLPDNGELPDDIEYEVDLKATFANTRLKRAYIALQAWKKAIFSD 103

Query: 75  -----GNWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALF 129
                GNW G  VC Y GV CAPA D+S++TVVAG+DLNG DIAG+ PAELG ++D+A+F
Sbjct: 104 PFNTTGNWHGPHVCGYTGVVCAPALDDSDVTVVAGVDLNGADIAGHLPAELGLMTDVAMF 163

Query: 130 HVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVP 189
           H+NSNRFCGIIP+S    KL++EFDVSNNR VG FPNV LSW  ++Y DLR+N+FEG+VP
Sbjct: 164 HLNSNRFCGIIPKSFEKLKLMHEFDVSNNRFVGPFPNVVLSWPDVKYFDLRFNDFEGQVP 223

Query: 190 RELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIIL 249
            ELFK +LDAIFLN+NRF+S IPE++GES  SVVTFA+N F+GC+P+SIGNM N+NEI+ 
Sbjct: 224 PELFKKELDAIFLNDNRFTSVIPESLGESPASVVTFANNKFTGCIPKSIGNMKNLNEIVF 283

Query: 250 SNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQ 309
            +NDL GC PSEIG L  +TVFDAS NSF G +P SF  L S+  + +S N+LTG V   
Sbjct: 284 MDNDLGGCFPSEIGKLSNVTVFDASKNSFIGRLPTSFVGLTSVEEIDISGNKLTGLVPHN 343

Query: 310 ICKLPNINNFTFSYNYFQGLGNECIP-GSKEGGVFDDTSNCLAQRPSQKWATTCSPVVSN 368
           IC+LPN+ N T+SYNYF G G  C+P GS++    DDT NCLA RP Q+ A  C+ V++ 
Sbjct: 344 ICQLPNLVNLTYSYNYFSGQGGSCVPGGSRKEIALDDTRNCLASRPEQRSAQECAVVINR 403

Query: 369 PVDCSKDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPV 428
           PVDCSKD C GG S PS PS   KP TP PT    + TP P  P   P P PT     P 
Sbjct: 404 PVDCSKDKCAGGSSTPSKPSPVHKP-TPVPTTPVHKPTPVPTTPVQKPSPVPTTPVQKPS 462

Query: 429 PTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSP 488
           P P  PV+ P+P          TP        P+P PS+    PVQ P    +S  P  P
Sbjct: 463 PVPTTPVHEPSP-------VLATPVD-----KPSPVPSR----PVQKPQPPKESPQPDDP 506

Query: 489 LPQSP 493
             QSP
Sbjct: 507 YDQSP 511

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30685162|ref|NP_188532.2| Pollen-specific leucine-rich repeat extensin-like protein 1 [Arabidopsis thaliana] gi|75335059|sp|Q9LJ64.1|PLRX1_ARATH RecName: Full=Pollen-specific leucine-rich repeat extensin-like protein 1; Short=AtPEX1; Short=Pollen-specific LRR/EXTENSIN1; AltName: Full=Cell wall hydroxyproline-rich glycoprotein; Flags: Precursor gi|9280319|dbj|BAB01698.1| extensin protein-like [Arabidopsis thaliana] gi|332642663|gb|AEE76184.1| Pollen-specific leucine-rich repeat extensin-like protein 1 [Arabidopsis thaliana]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 229/387 (59%), Positives = 282/387 (72%), Gaps = 14/387 (3%)

Query: 5   GC-LVLFSLICSSFSSFSFALSDAEAAFLVRRQLLTLPQDGKLPDNIENEKHMLL---SK 60
           GC L+LF    S F   + AL+D EA+FL RRQLL L ++G LPD+IE E  + L   + 
Sbjct: 11  GCFLLLFCFTISIFFYSAAALTDEEASFLTRRQLLALSENGDLPDDIEYEVDLDLKFANN 70

Query: 61  HSRRPYIRTRLTRQG----------NWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGN 110
             +R YI  +  ++           NWVG DVCSY GVFCAPA D+ ++ VVAGIDLN  
Sbjct: 71  RLKRAYIALQAWKKAFYSDPFNTAANWVGPDVCSYKGVFCAPALDDPSVLVVAGIDLNHA 130

Query: 111 DIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLS 170
           DIAGY P ELG L+D+ALFHVNSNRFCG+IP+SLS   L+YEFDVSNNR VG FP V LS
Sbjct: 131 DIAGYLPPELGLLTDVALFHVNSNRFCGVIPKSLSKLTLMYEFDVSNNRFVGPFPTVALS 190

Query: 171 WTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNF 230
           W SL++LD+RYN+FEG++P E+F   LDAIFLNNNRF S IPETIG+ST SVVTFAHN F
Sbjct: 191 WPSLKFLDIRYNDFEGKLPPEIFDKDLDAIFLNNNRFESTIPETIGKSTASVVTFAHNKF 250

Query: 231 SGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLE 290
           SGC+P++IG M N+NEI+   N+L GCLP+EIG L  +TVFDASSN F GS+P + S L 
Sbjct: 251 SGCIPKTIGQMKNLNEIVFIGNNLSGCLPNEIGSLNNVTVFDASSNGFVGSLPSTLSGLA 310

Query: 291 SIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCL 350
           ++ ++  SYN+ TG+V++ ICKLP ++NFTFSYN+F G    C+PGS +   FDDTSNCL
Sbjct: 311 NVEQMDFSYNKFTGFVTDNICKLPKLSNFTFSYNFFNGEAQSCVPGSSQEKQFDDTSNCL 370

Query: 351 AQRPSQKWATTCSPVVSNPVDCSKDVC 377
             RP+QK A  C PVVS PVDCSKD C
Sbjct: 371 QNRPNQKSAKECLPVVSRPVDCSKDKC 397

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20259488|gb|AAM13864.1| unknown protein [Arabidopsis thaliana]

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 229/387 (59%), Positives = 282/387 (72%), Gaps = 14/387 (3%)

Query: 5   GC-LVLFSLICSSFSSFSFALSDAEAAFLVRRQLLTLPQDGKLPDNIENEKHMLL---SK 60
           GC L+LF    S F   + AL+D EA+FL RRQLL L ++G LPD+IE E  + L   + 
Sbjct: 11  GCFLLLFCFTISIFFYSAAALTDEEASFLTRRQLLALSENGDLPDDIEYEVDLDLKFANN 70

Query: 61  HSRRPYIRTRLTRQG----------NWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGN 110
             +R YI  +  ++           NWVG DVCSY GVFCAPA D+ ++ VVAGIDLN  
Sbjct: 71  RLKRAYIALQAWKKAFYSDPFNTAANWVGPDVCSYKGVFCAPALDDPSVLVVAGIDLNHA 130

Query: 111 DIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLS 170
           DIAGY P ELG L+D+ALFHVNSNRFCG+IP+SLS   L+YEFDVSNNR VG FP V LS
Sbjct: 131 DIAGYLPPELGLLTDVALFHVNSNRFCGVIPKSLSKLTLMYEFDVSNNRFVGPFPTVALS 190

Query: 171 WTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNF 230
           W SL++LD+RYN+FEG++P E+F   LDAIFLNNNRF S IPETIG+ST SVVTFAHN F
Sbjct: 191 WPSLKFLDIRYNDFEGKLPPEIFDKDLDAIFLNNNRFESTIPETIGKSTASVVTFAHNKF 250

Query: 231 SGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLE 290
           SGC+P++IG M N+NEI+   N+L GCLP+EIG L  +TVFDASSN F GS+P + S L 
Sbjct: 251 SGCIPKTIGQMKNLNEIVFIGNNLSGCLPNEIGSLNNVTVFDASSNGFVGSLPSTLSGLA 310

Query: 291 SIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCL 350
           ++ ++  SYN+ TG+V++ ICKLP ++NFTFSYN+F G    C+PGS +   FDDTSNCL
Sbjct: 311 NVEQMDFSYNKFTGFVTDNICKLPKLSNFTFSYNFFNGEAQSCVPGSSQEKQFDDTSNCL 370

Query: 351 AQRPSQKWATTCSPVVSNPVDCSKDVC 377
             RP+QK A  C PVVS PVDCSKD C
Sbjct: 371 QNRPNQKSAKECLPVVSRPVDCSKDKC 397

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836208|ref|XP_002885986.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297331826|gb|EFH62245.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/410 (55%), Positives = 289/410 (70%), Gaps = 18/410 (4%)

Query: 19  SFSFALSDAEAAFLVRRQLLTLPQDGKLPDNIENE---KHMLLSKHSRRPYIRTRLTRQ- 74
            F   L+DAEA+F+ +RQLLTLP++G+LPD+IE E   K    +   +R YI  +  ++ 
Sbjct: 14  GFVLTLTDAEASFIAQRQLLTLPENGELPDDIEYEVDLKVTFANHRLKRAYIALQAWKKA 73

Query: 75  ---------GNWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSD 125
                    GNW G  VC Y GVFCAPA D+ N+ VVAG+DLNG DIAG+ PAELG ++D
Sbjct: 74  VYSDPFNTTGNWHGPHVCGYTGVFCAPALDDPNVAVVAGVDLNGADIAGHLPAELGLMTD 133

Query: 126 LALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFE 185
           +A+FH+NSNRFCGIIP+S     L++EFDVSNNR VG FP+V LSW +++++DLRYN+FE
Sbjct: 134 VAMFHLNSNRFCGIIPKSFEKLSLMHEFDVSNNRFVGPFPSVVLSWPAVKFIDLRYNDFE 193

Query: 186 GEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVN 245
           G+VP ELFK  LDAIFLNNNRF+S IP+++GES+ SVVTFAHN FSGC+PRSIGNM N+N
Sbjct: 194 GQVPPELFKKDLDAIFLNNNRFTSTIPDSLGESSASVVTFAHNKFSGCIPRSIGNMKNLN 253

Query: 246 EIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGY 305
           EII  +N L GC PSEIG L  + VFDAS NSF G +P SF  L S+    +S N+LTG+
Sbjct: 254 EIIFKDNSLGGCFPSEIGKLSNVNVFDASMNSFTGVLPPSFVGLTSLEEFDISGNKLTGF 313

Query: 306 VSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWATTCSPV 365
           + E ICKLP + N T++YNYF G G+ C+PGS++    DDT NCL  RP Q+ A  C+ V
Sbjct: 314 MPENICKLPKLVNLTYAYNYFNGQGDSCVPGSQKEIALDDTRNCLPDRPKQRSAKECAVV 373

Query: 366 VSNPVDCSKDVCLGGGS---PPSAPSTPPKPSTPTPTPAPEQRTPTPAPP 412
           +S PVDCSKD C GG S   P  +PS  P P+ P   P P + +P P  P
Sbjct: 374 ISRPVDCSKDKCAGGSSYVTPSKSPS--PVPTRPVHKPQPPKESPQPNDP 421

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834816|ref|XP_002885290.1| hypothetical protein ARALYDRAFT_479420 [Arabidopsis lyrata subsp. lyrata] gi|297331130|gb|EFH61549.1| hypothetical protein ARALYDRAFT_479420 [Arabidopsis lyrata subsp. lyrata]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 241/476 (50%), Positives = 300/476 (63%), Gaps = 57/476 (11%)

Query: 5   GCLVLFSLICSSFSSFSFA-LSDAEAAFLVRRQLLTLPQDGKLPDNIENEKHMLL---SK 60
           GC +L      S   +S A L+D EA+FL RRQLL L ++G LPD++E E  + L   + 
Sbjct: 6   GCFLLLVFFTISIFFYSAAALTDEEASFLTRRQLLALSENGDLPDDMEYEVDLDLKFANN 65

Query: 61  HSRRPYIRTRLTRQG----------NWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGN 110
             +R YI  +  ++           NWVG DVCSY GVFCAPA D+ ++ VVAGIDLN  
Sbjct: 66  RLKRAYIALQAWKKAFYSDPFNTAANWVGPDVCSYKGVFCAPALDDPSVLVVAGIDLNHA 125

Query: 111 DIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLS 170
           DIAGY P ELG L+D+ALFH+NSNRFCG+IP+SLS   L+YEFDVSNNR VG FP V LS
Sbjct: 126 DIAGYLPPELGLLTDVALFHINSNRFCGVIPKSLSKLTLMYEFDVSNNRFVGPFPTVALS 185

Query: 171 WTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNF 230
           W SL++LD+RYN+FEG++P E+F   LDAIFLNNNRF S IPETIG+ST SVVTFAHN F
Sbjct: 186 WPSLKFLDIRYNDFEGKLPPEIFDKDLDAIFLNNNRFESTIPETIGKSTASVVTFAHNKF 245

Query: 231 SGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLE 290
           SGC+P++IG M N+NEI+   N+L GCLP+EIG L  +TVFDASSN F GS+P + S L 
Sbjct: 246 SGCIPKTIGQMKNLNEIVFIGNNLSGCLPNEIGSLNNVTVFDASSNGFVGSLPSTLSGLA 305

Query: 291 SIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCL 350
           ++ ++  SYN+ TG+V++ ICKLP ++NFTFSYN+F G    C+PGS +   FDD SNCL
Sbjct: 306 NVEQMDFSYNKFTGFVTDNICKLPKLSNFTFSYNFFNGEAQSCVPGSSQEKQFDDMSNCL 365

Query: 351 AQRPSQKWATTCSPVVSNPVDCSKDVCLGGGSPPSAPSTPPKPSTPTPTPAPE------- 403
             RP+QK A  C PVVS PVDCSKD C GG    S  +  PKP+   P P  E       
Sbjct: 366 QNRPNQKSAKECLPVVSRPVDCSKDKCAGGDGGGSGSNPSPKPTPKAPEPKKEINPPKLE 425

Query: 404 -------------------QRTPTPAPPTPSPPPPPTP-----------------K 423
                                TP+  P  P  P P +P                 K
Sbjct: 426 EPSKPKPEESPKPQQPSPKPETPSHEPSNPKEPTPESPKQESPKPEQPKPKPESPK 481

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15226640|ref|NP_179188.1| Pollen-specific leucine-rich repeat extensin-like protein 3 [Arabidopsis thaliana] gi|75338652|sp|Q9XIL9.1|PLRX3_ARATH RecName: Full=Pollen-specific leucine-rich repeat extensin-like protein 3; Short=AtPEX3; Short=Pollen-specific LRR/EXTENSIN3; AltName: Full=Cell wall hydroxyproline-rich glycoprotein; Flags: Precursor gi|5306245|gb|AAD41978.1| unknown protein [Arabidopsis thaliana] gi|330251349|gb|AEC06443.1| Pollen-specific leucine-rich repeat extensin-like protein 3 [Arabidopsis thaliana]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/415 (54%), Positives = 291/415 (70%), Gaps = 21/415 (5%)

Query: 17  FSSFSFALSDAEAAFLVRRQLLTLPQDGKLPDNIENE---KHMLLSKHSRRPYIRTRLTR 73
           F  F   L+DAE +F+ +RQLLTLP++G+LPD+IE E   K    +   +R YI  +  +
Sbjct: 12  FQGFVPTLTDAEVSFIAQRQLLTLPENGELPDDIEYEVDLKVTFANHRLKRAYIALQAWK 71

Query: 74  Q----------GNWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWL 123
           +          GNW G  VC Y GVFCAPA D+ ++ VVAG+DLNG DIAG+ PAELG +
Sbjct: 72  KAVYSDPFNTTGNWHGPHVCGYTGVFCAPALDDPDVAVVAGVDLNGADIAGHLPAELGLM 131

Query: 124 SDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNN 183
           +D+A+FH+NSNRFCGIIP+S     L++EFDVSNNR VG FP+V LSW +++++D+RYN+
Sbjct: 132 TDVAMFHLNSNRFCGIIPKSFEKLSLMHEFDVSNNRFVGPFPSVVLSWPAVKFIDVRYND 191

Query: 184 FEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPN 243
           FEG+VP ELFK  LDAIFLNNNRF+S IP+++GES+ SVVTFAHN FSGC+PRSIGNM N
Sbjct: 192 FEGQVPPELFKKDLDAIFLNNNRFTSTIPDSLGESSASVVTFAHNKFSGCIPRSIGNMKN 251

Query: 244 VNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLT 303
           +NEII  +N L GC PSEIG L  + VFDAS NSF G +P SF  L S+    +S N+LT
Sbjct: 252 LNEIIFKDNSLGGCFPSEIGKLANVNVFDASMNSFTGVLPPSFVGLTSMEEFDISGNKLT 311

Query: 304 GYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWATTCS 363
           G++ E ICKLP + N T++YNYF G G+ C+PGS++    DDT NCL  RP Q+ A  C+
Sbjct: 312 GFIPENICKLPKLVNLTYAYNYFNGQGDSCVPGSQKQIALDDTRNCLPDRPKQRSAKECA 371

Query: 364 PVVSNPVDCSKDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPP 418
            V+S PVDCSKD C GG    S+ +TP K    +P+P P +    P PP  SP P
Sbjct: 372 VVISRPVDCSKDKCAGG----SSQATPSK----SPSPVPTRPVHKPQPPKESPQP 418

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103499|ref|XP_002313080.1| predicted protein [Populus trichocarpa] gi|222849488|gb|EEE87035.1| predicted protein [Populus trichocarpa]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/394 (58%), Positives = 292/394 (74%), Gaps = 13/394 (3%)

Query: 1   MQVVGCLVLFSLICSSFSSFSFALSDAEAAFLVRRQLLTLPQDGKLPDNIENE---KHML 57
           ++V+GC   FS + SSFS+FS AL+DAEA+ + RRQLLTL ++G+LPD+ E E   K   
Sbjct: 5   LRVLGCFFFFSFLLSSFSNFSLALTDAEASSIARRQLLTLHENGELPDDFEYEVDVKETF 64

Query: 58  LSKHSRRPYIRTRLTRQ----------GNWVGTDVCSYYGVFCAPAPDNSNITVVAGIDL 107
            ++  RR YI  +  ++          GNWVG DVC+Y GVFCAPA D+S ++V+AG+DL
Sbjct: 65  ANQRLRRAYIGLQAWKKAMYSDPFNTTGNWVGADVCAYNGVFCAPALDDSGLSVMAGVDL 124

Query: 108 NGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNV 167
           NG DIAGY PAELG L+D+ALFH+NSNRFCGIIP+S S   L+YEFDVSNNR VG FP+V
Sbjct: 125 NGADIAGYLPAELGLLTDVALFHINSNRFCGIIPKSFSKLTLMYEFDVSNNRFVGDFPSV 184

Query: 168 CLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAH 227
            L+  SL+YLD+R+N+FEG +P ELF   LDA+FLN+NRF+S IPETIG S VSVVTFA+
Sbjct: 185 VLTLPSLKYLDIRFNDFEGSLPPELFNKDLDALFLNDNRFTSTIPETIGNSPVSVVTFAN 244

Query: 228 NNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFS 287
           N F+GC+P SIG M N+NE+I   NDL GC P+EIG L  +TVFDAS N F G +P SF+
Sbjct: 245 NKFTGCIPHSIGKMTNLNEVIFMGNDLGGCFPAEIGLLGNVTVFDASHNGFTGILPSSFA 304

Query: 288 SLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTS 347
            L+ +  L L+ N+LTG+V E IC+L ++ NFTFSYNYF+G    C+P S++  V DDTS
Sbjct: 305 GLKKVELLDLADNKLTGFVPENICRLSSLTNFTFSYNYFKGEAQACVPPSRKDTVLDDTS 364

Query: 348 NCLAQRPSQKWATTCSPVVSNPVDCSKDVCLGGG 381
           NCL+ RP QK A TC PVVS PVDCSKD C GGG
Sbjct: 365 NCLSDRPKQKSARTCYPVVSRPVDCSKDKCSGGG 398

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123244|ref|XP_002330268.1| predicted protein [Populus trichocarpa] gi|222871303|gb|EEF08434.1| predicted protein [Populus trichocarpa]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 216/366 (59%), Positives = 274/366 (74%), Gaps = 13/366 (3%)

Query: 23  ALSDAEAAFLVRRQLLTLPQDGKLPDNIENE---KHMLLSKHSRRPYIRTRLTRQ----- 74
           AL+DAEA+++ RRQLLTL ++ +LP   E E   K    ++  RR YI  +  ++     
Sbjct: 27  ALTDAEASYIARRQLLTLNENSELPHEFEYEVDVKITFANQRLRRAYIGLQAWKKAIYSD 86

Query: 75  -----GNWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALF 129
                GNWVG +VC+Y GVFCAPA D+ +++VVAG+DLNG DIAG+ PAELG ++D+ALF
Sbjct: 87  PFNTTGNWVGANVCAYNGVFCAPALDDPSLSVVAGVDLNGADIAGHLPAELGLMTDVALF 146

Query: 130 HVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVP 189
           H+NSNRFCGIIPES S   L+YEFDVSNNR VG FP+V LSW SL+YLD+R+N+FEG +P
Sbjct: 147 HINSNRFCGIIPESFSKLTLMYEFDVSNNRFVGDFPSVVLSWPSLKYLDVRFNDFEGSLP 206

Query: 190 RELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIIL 249
            ELF  +LDA+FLN+NRF+S IPETIG S VSVVTFA+N F+GC+P S+G M N+NE+I 
Sbjct: 207 PELFNKELDALFLNDNRFTSTIPETIGNSAVSVVTFANNKFTGCIPHSVGKMANLNEVIF 266

Query: 250 SNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQ 309
             NDL GC P+EIG L+ +TVFDAS N F G +P SF+ L+ +  L L+ N+LTG+V E 
Sbjct: 267 MGNDLGGCFPAEIGLLRNVTVFDASHNGFTGILPPSFAGLKKVELLDLADNKLTGFVPEN 326

Query: 310 ICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWATTCSPVVSNP 369
           ICKLP++ NFTFSYNYF+G    C+P S++  V DDTSNCL+ RP QK A TC PVVS P
Sbjct: 327 ICKLPSLTNFTFSYNYFKGEAQACVPPSRKDIVLDDTSNCLSDRPKQKSARTCYPVVSRP 386

Query: 370 VDCSKD 375
           VDCSKD
Sbjct: 387 VDCSKD 392

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798516|ref|XP_002867142.1| hypothetical protein ARALYDRAFT_491276 [Arabidopsis lyrata subsp. lyrata] gi|297312978|gb|EFH43401.1| hypothetical protein ARALYDRAFT_491276 [Arabidopsis lyrata subsp. lyrata]

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/386 (57%), Positives = 281/386 (72%), Gaps = 16/386 (4%)

Query: 23  ALSDAEAAFLVRRQLLTLPQDGKLPDNIENE---KHMLLSKHSRRPYIRTRLTRQ----- 74
           AL+D EAAF+V+RQLLTLP +G+LPD+IE E   K    +   +R YI  +  ++     
Sbjct: 27  ALTDTEAAFIVQRQLLTLPDNGELPDDIEYEVDLKATFANTRLKRAYIALQAWKKAIFSD 86

Query: 75  -----GNWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALF 129
                GNW G  VCSY GV CAPA D+S++TVVAG+DLNG DIAG+ PAELG ++D+A+F
Sbjct: 87  PFNTTGNWHGPHVCSYTGVVCAPALDDSDVTVVAGVDLNGADIAGHLPAELGLMTDVAMF 146

Query: 130 HVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVP 189
           H+NSNRFCGIIP+S    KL++EFDVSNNR VG FP V LSW +++Y+DLR+N+FEG+VP
Sbjct: 147 HLNSNRFCGIIPKSFEKLKLMHEFDVSNNRFVGPFPKVVLSWPNVKYIDLRFNDFEGQVP 206

Query: 190 RELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIIL 249
            ELFK +LDAIFLN+NRF+S IPE++GES  SVVTFA+N F+GC+P+SIGNM N+NEI+ 
Sbjct: 207 PELFKKELDAIFLNDNRFTSVIPESLGESPASVVTFANNKFTGCIPKSIGNMKNLNEIVF 266

Query: 250 SNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQ 309
            +NDL GC PSEIG L  +TVFDAS NSF G +P SF  L ++    +S N+LTG V + 
Sbjct: 267 MDNDLGGCFPSEIGKLSNVTVFDASKNSFIGRLPTSFVGLTNVEEFDISGNKLTGLVPDN 326

Query: 310 ICKLPNINNFTFSYNYFQGLGNECIPGSKEGGV-FDDTSNCLAQRPSQKWATTCSPVVSN 368
           IC LPN+ NFT+SYNYF G G  C+PG     +  DDT NCL  RP Q+ +  C+ V++ 
Sbjct: 327 ICNLPNLVNFTYSYNYFNGQGGSCVPGGGRKEIALDDTRNCLPARPDQRSSQECAVVINR 386

Query: 369 PVDCSKDVCLGGGSPPSAPSTPPKPS 394
           PVDCSKD C GGG   S  STP KPS
Sbjct: 387 PVDCSKDKCAGGGGGGS--STPSKPS 410

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222149|ref|NP_175372.1| Pollen-specific leucine-rich repeat extensin-like protein 2 [Arabidopsis thaliana] gi|75338632|sp|Q9XIB6.1|PLRX2_ARATH RecName: Full=Pollen-specific leucine-rich repeat extensin-like protein 2; Short=AtPEX2; Short=Pollen-specific LRR/EXTENSIN2; AltName: Full=Cell wall hydroxyproline-rich glycoprotein; Flags: Precursor gi|5430752|gb|AAD43152.1|AC007504_7 Hypothetical Protein [Arabidopsis thaliana] gi|332194314|gb|AEE32435.1| Pollen-specific leucine-rich repeat extensin-like protein 2 [Arabidopsis thaliana]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 256/540 (47%), Positives = 324/540 (60%), Gaps = 60/540 (11%)

Query: 5   GCLVLFSLIC-SSFSSFSFALSDAEAAFLVRRQLLTLPQDGKLPDNIENEKHMLLSKHSR 63
           GC  +  LI  +  ++F    S  E A L +          K+  N++ E   L     +
Sbjct: 6   GCFFILLLISYTVVATFDDEPSFPENADLTKDLEQKCFSINKVDPNLKFENDRL-----K 60

Query: 64  RPYIRTRLTRQG----------NWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIA 113
           R YI  +  ++           NWVG+DVCSY GV+CAPA D+ ++TVVAG+DLN  DIA
Sbjct: 61  RAYIALQAWKKAIYSDPFKTTANWVGSDVCSYNGVYCAPALDDDSLTVVAGVDLNHADIA 120

Query: 114 GYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTS 173
           G+ P ELG ++DLALFH+NSNRFCGIIP+SLS   L+YEFDVSNNR VG FP V LSW S
Sbjct: 121 GHLPPELGLMTDLALFHINSNRFCGIIPKSLSKLALMYEFDVSNNRFVGQFPEVSLSWPS 180

Query: 174 LRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGC 233
           L++LDLRYN FEG +P E+F   LDAIFLNNNRF S IP TIG+S  SVVTFA+N FSGC
Sbjct: 181 LKFLDLRYNEFEGSLPSEIFDKDLDAIFLNNNRFESVIPGTIGKSKASVVTFANNKFSGC 240

Query: 234 VPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIH 293
           +P+SIGNM N+NEI+ + N+L GC P+EIG L  +TVFDAS N F GS+P + S L S+ 
Sbjct: 241 IPKSIGNMKNLNEIVFTGNNLTGCFPNEIGLLNNVTVFDASKNGFVGSLPSTLSGLASVE 300

Query: 294 RLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQR 353
           +L LS+N+LTG+V ++ CKLPN+++F FSYN+F G    C+PG   G  FDDT+NCL  R
Sbjct: 301 QLDLSHNKLTGFVVDKFCKLPNLDSFKFSYNFFNGEAESCVPGRNNGKQFDDTNNCLQNR 360

Query: 354 PSQKWATTCSPVVSNPVDCSKDVCLGGGSPPSAP------STPPKPSTPTPT-PAPEQRT 406
           PSQK A  C PVVS PVDCSKD C GG +  S+P      ++ PKPS P P  P P   +
Sbjct: 361 PSQKPAKQCLPVVSRPVDCSKDKCSGGSNGGSSPSPNPPRTSEPKPSKPEPVMPKPSDSS 420

Query: 407 PTPAPPT---------------PSPPPPPTPKPL-----TPVPTPLPPVNSPNPPPRNWR 446
               P T               P P  P     L     +P P P  P +SP P     +
Sbjct: 421 KPETPKTPEQPSPKPQPPKHESPKPEEPENKHELPKQKESPKPQPSKPEDSPKP----EQ 476

Query: 447 VRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSP------PPPPSVK 500
            +    P+P +P    PEP+KP+      PP+  Q   P  P   SP      PPPP V+
Sbjct: 477 PKPEESPKPEQPQ--IPEPTKPV-----SPPNEAQGPTPDDPYDASPVKNRRSPPPPKVE 529

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	527
TAIR|locus:2085889	956	AT3G19020 [Arabidopsis thalian	0.660	0.364	0.603	1.6e-116
TAIR|locus:2118949	699	AT4G33970 [Arabidopsis thalian	0.660	0.497	0.580	1.6e-111
TAIR|locus:2044576	727	AT2G15880 [Arabidopsis thalian	0.658	0.477	0.572	6.8e-111
TAIR|locus:2010247	847	AT1G49490 [Arabidopsis thalian	0.578	0.360	0.645	7.8e-110
TAIR|locus:2142105	760	LRX3 "AT4G13340" [Arabidopsis	0.565	0.392	0.524	9.1e-84
TAIR|locus:2124142	857	AT4G18670 "AT4G18670" [Arabido	0.641	0.394	0.473	1.2e-83
TAIR|locus:2094854	494	AT3G24480 [Arabidopsis thalian	0.645	0.688	0.470	1.5e-83
TAIR|locus:2008895	744	LRX1 "AT1G12040" [Arabidopsis	0.573	0.405	0.518	5.8e-82
TAIR|locus:2121348	391	AT4G28380 [Arabidopsis thalian	0.573	0.772	0.511	4.7e-80
TAIR|locus:2094389	470	AT3G22800 "AT3G22800" [Arabido	0.565	0.634	0.486	4.8e-78

TAIR|locus:2085889 AT3G19020 [Arabidopsis thaliana (taxid:3702)]

 Score = 1148 (409.2 bits), Expect = 1.6e-116, P = 1.6e-116
 Identities = 218/361 (60%), Positives = 267/361 (73%)

Query:    34 RRQLLTLPQDGKLPDNIENEKHMLL---SKHSRRPYIRTRLTRQG----------NWVGT 80
             RRQLL L ++G LPD+IE E  + L   +   +R YI  +  ++           NWVG 
Sbjct:    41 RRQLLALSENGDLPDDIEYEVDLDLKFANNRLKRAYIALQAWKKAFYSDPFNTAANWVGP 100

Query:    81 DVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGII 140
             DVCSY GVFCAPA D+ ++ VVAGIDLN  DIAGY P ELG L+D+ALFHVNSNRFCG+I
Sbjct:   101 DVCSYKGVFCAPALDDPSVLVVAGIDLNHADIAGYLPPELGLLTDVALFHVNSNRFCGVI 160

Query:   141 PESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAI 200
             P+SLS   L+YEFDVSNNR VG FP V LSW SL++LD+RYN+FEG++P E+F   LDAI
Sbjct:   161 PKSLSKLTLMYEFDVSNNRFVGPFPTVALSWPSLKFLDIRYNDFEGKLPPEIFDKDLDAI 220

Query:   201 FLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPS 260
             FLNNNRF S IPETIG+ST SVVTFAHN FSGC+P++IG M N+NEI+   N+L GCLP+
Sbjct:   221 FLNNNRFESTIPETIGKSTASVVTFAHNKFSGCIPKTIGQMKNLNEIVFIGNNLSGCLPN 280

Query:   261 EIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFT 320
             EIG L  +TVFDASSN F GS+P + S L ++ ++  SYN+ TG+V++ ICKLP ++NFT
Sbjct:   281 EIGSLNNVTVFDASSNGFVGSLPSTLSGLANVEQMDFSYNKFTGFVTDNICKLPKLSNFT 340

Query:   321 FSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWATTCSPVVSNPVDCSKDVCLGG 380
             FSYN+F G    C+PGS +   FDDTSNCL  RP+QK A  C PVVS PVDCSKD C GG
Sbjct:   341 FSYNFFNGEAQSCVPGSSQEKQFDDTSNCLQNRPNQKSAKECLPVVSRPVDCSKDKCAGG 400

Query:   381 G 381
             G
Sbjct:   401 G 401

GO:0005634 "nucleus" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2118949 AT4G33970 [Arabidopsis thaliana (taxid:3702)]

 Score = 1101 (392.6 bits), Expect = 1.6e-111, P = 1.6e-111
 Identities = 210/362 (58%), Positives = 265/362 (73%)

Query:    33 VRRQLLTLPQDGKLPDNIENE---KHMLLSKHSRRPYIRTRLTRQ----------GNWVG 79
             V+RQLLTLP +G+LPD+IE E   K    +   +R YI  +  ++          GNW G
Sbjct:    54 VQRQLLTLPDNGELPDDIEYEVDLKATFANTRLKRAYIALQAWKKAIFSDPFNTTGNWHG 113

Query:    80 TDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGI 139
               VC Y GV CAPA D+S++TVVAG+DLNG DIAG+ PAELG ++D+A+FH+NSNRFCGI
Sbjct:   114 PHVCGYTGVVCAPALDDSDVTVVAGVDLNGADIAGHLPAELGLMTDVAMFHLNSNRFCGI 173

Query:   140 IPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDA 199
             IP+S    KL++EFDVSNNR VG FPNV LSW  ++Y DLR+N+FEG+VP ELFK +LDA
Sbjct:   174 IPKSFEKLKLMHEFDVSNNRFVGPFPNVVLSWPDVKYFDLRFNDFEGQVPPELFKKELDA 233

Query:   200 IFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLP 259
             IFLN+NRF+S IPE++GES  SVVTFA+N F+GC+P+SIGNM N+NEI+  +NDL GC P
Sbjct:   234 IFLNDNRFTSVIPESLGESPASVVTFANNKFTGCIPKSIGNMKNLNEIVFMDNDLGGCFP 293

Query:   260 SEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNF 319
             SEIG L  +TVFDAS NSF G +P SF  L S+  + +S N+LTG V   IC+LPN+ N 
Sbjct:   294 SEIGKLSNVTVFDASKNSFIGRLPTSFVGLTSVEEIDISGNKLTGLVPHNICQLPNLVNL 353

Query:   320 TFSYNYFQGLGNECIPG-SKEGGVFDDTSNCLAQRPSQKWATTCSPVVSNPVDCSKDVCL 378
             T+SYNYF G G  C+PG S++    DDT NCLA RP Q+ A  C+ V++ PVDCSKD C 
Sbjct:   354 TYSYNYFSGQGGSCVPGGSRKEIALDDTRNCLASRPEQRSAQECAVVINRPVDCSKDKCA 413

Query:   379 GG 380
             GG
Sbjct:   414 GG 415

GO:0005634 "nucleus" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

TAIR|locus:2044576 AT2G15880 [Arabidopsis thaliana (taxid:3702)]

 Score = 1095 (390.5 bits), Expect = 6.8e-111, P = 6.8e-111
 Identities = 206/360 (57%), Positives = 265/360 (73%)

Query:    34 RRQLLTLPQDGKLPDNIENEKHMLLS--KHS-RRPYIRTRLTRQ----------GNWVGT 80
             +RQLLTLP++G+LPD+IE E  + ++   H  +R YI  +  ++          GNW G 
Sbjct:    29 QRQLLTLPENGELPDDIEYEVDLKVTFANHRLKRAYIALQAWKKAVYSDPFNTTGNWHGP 88

Query:    81 DVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGII 140
              VC Y GVFCAPA D+ ++ VVAG+DLNG DIAG+ PAELG ++D+A+FH+NSNRFCGII
Sbjct:    89 HVCGYTGVFCAPALDDPDVAVVAGVDLNGADIAGHLPAELGLMTDVAMFHLNSNRFCGII 148

Query:   141 PESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAI 200
             P+S     L++EFDVSNNR VG FP+V LSW +++++D+RYN+FEG+VP ELFK  LDAI
Sbjct:   149 PKSFEKLSLMHEFDVSNNRFVGPFPSVVLSWPAVKFIDVRYNDFEGQVPPELFKKDLDAI 208

Query:   201 FLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPS 260
             FLNNNRF+S IP+++GES+ SVVTFAHN FSGC+PRSIGNM N+NEII  +N L GC PS
Sbjct:   209 FLNNNRFTSTIPDSLGESSASVVTFAHNKFSGCIPRSIGNMKNLNEIIFKDNSLGGCFPS 268

Query:   261 EIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFT 320
             EIG L  + VFDAS NSF G +P SF  L S+    +S N+LTG++ E ICKLP + N T
Sbjct:   269 EIGKLANVNVFDASMNSFTGVLPPSFVGLTSMEEFDISGNKLTGFIPENICKLPKLVNLT 328

Query:   321 FSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWATTCSPVVSNPVDCSKDVCLGG 380
             ++YNYF G G+ C+PGS++    DDT NCL  RP Q+ A  C+ V+S PVDCSKD C GG
Sbjct:   329 YAYNYFNGQGDSCVPGSQKQIALDDTRNCLPDRPKQRSAKECAVVISRPVDCSKDKCAGG 388

GO:0005634 "nucleus" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

TAIR|locus:2010247 AT1G49490 [Arabidopsis thaliana (taxid:3702)]

 Score = 1085 (387.0 bits), Expect = 7.8e-110, P = 7.8e-110
 Identities = 197/305 (64%), Positives = 238/305 (78%)

Query:    76 NWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNR 135
             NWVG+DVCSY GV+CAPA D+ ++TVVAG+DLN  DIAG+ P ELG ++DLALFH+NSNR
Sbjct:    83 NWVGSDVCSYNGVYCAPALDDDSLTVVAGVDLNHADIAGHLPPELGLMTDLALFHINSNR 142

Query:   136 FCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM 195
             FCGIIP+SLS   L+YEFDVSNNR VG FP V LSW SL++LDLRYN FEG +P E+F  
Sbjct:   143 FCGIIPKSLSKLALMYEFDVSNNRFVGQFPEVSLSWPSLKFLDLRYNEFEGSLPSEIFDK 202

Query:   196 KLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLM 255
              LDAIFLNNNRF S IP TIG+S  SVVTFA+N FSGC+P+SIGNM N+NEI+ + N+L 
Sbjct:   203 DLDAIFLNNNRFESVIPGTIGKSKASVVTFANNKFSGCIPKSIGNMKNLNEIVFTGNNLT 262

Query:   256 GCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPN 315
             GC P+EIG L  +TVFDAS N F GS+P + S L S+ +L LS+N+LTG+V ++ CKLPN
Sbjct:   263 GCFPNEIGLLNNVTVFDASKNGFVGSLPSTLSGLASVEQLDLSHNKLTGFVVDKFCKLPN 322

Query:   316 INNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWATTCSPVVSNPVDCSKD 375
             +++F FSYN+F G    C+PG   G  FDDT+NCL  RPSQK A  C PVVS PVDCSKD
Sbjct:   323 LDSFKFSYNFFNGEAESCVPGRNNGKQFDDTNNCLQNRPSQKPAKQCLPVVSRPVDCSKD 382

Query:   376 VCLGG 380
              C GG
Sbjct:   383 KCSGG 387

GO:0005634 "nucleus" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

TAIR|locus:2142105 LRX3 "AT4G13340" [Arabidopsis thaliana (taxid:3702)]

 Score = 839 (300.4 bits), Expect = 9.1e-84, P = 9.1e-84
 Identities = 159/303 (52%), Positives = 203/303 (66%)

Query:    76 NWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNR 135
             NW+G++VC+Y GVFC+PA DN  I  VAGIDLN  DIAGY P ELG LSDLALFHVNSNR
Sbjct:    90 NWIGSNVCNYTGVFCSPALDNRKIRTVAGIDLNHADIAGYLPEELGLLSDLALFHVNSNR 149

Query:   136 FCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM 195
             FCG +P   +  KL++E D+SNNR  G FP V L   SL++LDLR+N FEG VP+ELF  
Sbjct:   150 FCGTVPHRFNRLKLLFELDLSNNRFAGKFPTVVLQLPSLKFLDLRFNEFEGTVPKELFSK 209

Query:   196 KLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLM 255
              LDAIF+N+NRF   +PE  G+S VSV+  A+N F GCVP S+  M N+NEII  NN L 
Sbjct:   210 DLDAIFINHNRFRFELPENFGDSPVSVIVLANNRFHGCVPSSLVEMKNLNEIIFMNNGLN 269

Query:   256 GCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPN 315
              CLPS+IG LK +TVFD S N   G +P+S   + S+ +L +++N L+G +   IC+LP 
Sbjct:   270 SCLPSDIGRLKNVTVFDVSFNELVGPLPESVGEMVSVEQLNVAHNMLSGKIPASICQLPK 329

Query:   316 INNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWATTCSPVVSNP-VDCSK 374
             + NFT+SYN+F G    C+   +    FDD  NCL  RP+Q+    C   +S P V+C  
Sbjct:   330 LENFTYSYNFFTGEAPVCLRLPE----FDDRRNCLPGRPAQRSPGQCKAFLSRPPVNCGS 385

Query:   375 DVC 377
               C
Sbjct:   386 FSC 388

GO:0005515 "protein binding" evidence=IPI

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2124142 AT4G18670 "AT4G18670" [Arabidopsis thaliana (taxid:3702)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 170/359 (47%), Positives = 225/359 (62%)

Query:    34 RRQLLTLPQD-GKLPDNIENEKHMLLSK-HSRRPYIRTRLTRQG----------NWVGTD 81
             +RQLL    + G   +N++ +  ++      R  YI  +  +Q           NW+G+D
Sbjct:    48 QRQLLYFRDEFGDRGENVDVDPSLVFENPRLRNAYIALQAWKQAILSDPNNFTTNWIGSD 107

Query:    82 VCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIP 141
             VCSY GV+CAPA DN  I  VAGIDLN  DIAGY P ELG L+DLALFH+NSNRFCG +P
Sbjct:   108 VCSYTGVYCAPALDNRRIRTVAGIDLNHADIAGYLPQELGLLTDLALFHINSNRFCGTVP 167

Query:   142 ESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIF 201
                +  KL++E D+SNNR  G FP V L   SL++LDLR+N FEG VPRELF   LDAIF
Sbjct:   168 HRFNRLKLLFELDLSNNRFAGIFPTVVLQLPSLKFLDLRFNEFEGPVPRELFSKDLDAIF 227

Query:   202 LNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSE 261
             +N+NRF   +P+ +G+S VSV+  A+N+F GC+P S+G+M N+ EII   N    CLPS+
Sbjct:   228 INHNRFRFELPDNLGDSPVSVIVVANNHFHGCIPTSLGDMRNLEEIIFMENGFNSCLPSQ 287

Query:   262 IGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTF 321
             IG LK +TVFD S N   GS+P S   + S+ +L +++N+ +G +   IC+LP + NFTF
Sbjct:   288 IGRLKNVTVFDFSFNELVGSLPASIGGMVSMEQLNVAHNRFSGKIPATICQLPRLENFTF 347

Query:   322 SYNYFQGLGNECI--PGSKEGGVFDDTSNCLAQRPSQKWATTCSPVVS-NPVDCSKDVC 377
             SYN+F G    C+  PG      FDD  NCL  RP+Q+    C+   S  PVDC    C
Sbjct:   348 SYNFFTGEPPVCLGLPG------FDDRRNCLPARPAQRSPGQCAAFSSLPPVDCGSFGC 400

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2094854 AT3G24480 [Arabidopsis thaliana (taxid:3702)]

 Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
 Identities = 168/357 (47%), Positives = 223/357 (62%)

Query:    34 RRQLLTLPQD-GKLPDNIENEKHMLLSK-HSRRPYIRTRLTRQG----------NWVGTD 81
             RRQLL    + G   +N+  +  ++      R  YI  +  +Q           NW+G++
Sbjct:    44 RRQLLYYRDEFGDRGENVTVDPSLIFENPRLRSAYIALQAWKQAILSDPNNITVNWIGSN 103

Query:    82 VCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIP 141
             VC+Y GVFC+ A DN  I  VAGIDLN  DIAGY P ELG L+DLALFHVNSNRFCG +P
Sbjct:   104 VCNYTGVFCSKALDNRKIRTVAGIDLNHADIAGYLPEELGLLTDLALFHVNSNRFCGTVP 163

Query:   142 ESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIF 201
                   KL++E D+SNNR  G FP V L   SL++LDLR+N FEG VP+ELF   LDAIF
Sbjct:   164 HKFKQLKLLFELDLSNNRFAGKFPTVVLHLPSLKFLDLRFNEFEGTVPKELFSKNLDAIF 223

Query:   202 LNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSE 261
             +N+NRF   +PE  G+S VSV+  A+N+F GC+P S+  M N+NEII  NN L  CLP++
Sbjct:   224 INHNRFRFELPENFGDSPVSVIVLANNHFHGCIPTSLVEMKNLNEIIFMNNGLNSCLPAD 283

Query:   262 IGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTF 321
             IG LK +TVFD S N   G +P+S   +  + +L +++N L+G +   IC+LP + NFT+
Sbjct:   284 IGRLKNVTVFDVSFNELVGPLPESVGGMVEVEQLNVAHNLLSGKIPASICQLPKLENFTY 343

Query:   322 SYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWATTCSPVVSNP-VDCSKDVC 377
             SYN+F G    C+  S+    FDD  NCL  RP+Q+ +  CS  +S P VDC    C
Sbjct:   344 SYNFFTGEAPVCLRLSE----FDDRRNCLPGRPAQRSSRQCSAFLSRPSVDCGSFGC 396

GO:0005576 "extracellular region" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2008895 LRX1 "AT1G12040" [Arabidopsis thaliana (taxid:3702)]

 Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
 Identities = 157/303 (51%), Positives = 204/303 (67%)

Query:    76 NWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNR 135
             NW G+DVCSY G++CAP+P      VVAGIDLN  D+AGY  +ELG LSDLALFH+NSNR
Sbjct:    75 NWNGSDVCSYNGIYCAPSPSYPKTRVVAGIDLNHADMAGYLASELGLLSDLALFHINSNR 134

Query:   136 FCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM 195
             FCG +P + +  KL+YE D+SNNR VG FP V LS  SL++LDLRYN FEG++P +LF  
Sbjct:   135 FCGEVPLTFNRMKLLYELDLSNNRFVGKFPKVVLSLPSLKFLDLRYNEFEGKIPSKLFDR 194

Query:   196 KLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNM-PNVNEIILSNNDL 254
             +LDAIFLN+NRF   IP+ +G S VS +  A NN  GC+P SIG M   +NE+ILSN++L
Sbjct:   195 ELDAIFLNHNRFRFGIPKNMGNSPVSALVLADNNLGGCIPGSIGQMGKTLNELILSNDNL 254

Query:   255 MGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLP 314
              GCLP +IG LKK+TVFD +SN   G +P S  +++S+  L ++ N  TG +   IC+L 
Sbjct:   255 TGCLPPQIGNLKKVTVFDITSNRLQGPLPSSVGNMKSLEELHVANNAFTGVIPPSICQLS 314

Query:   315 NINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWATTCSPVVSNPVDCSK 374
             N+ NFT+S NYF G    C        V + T NC+     Q+    CS +++ PVDCSK
Sbjct:   315 NLENFTYSSNYFSGRPPICAASLLADIVVNGTMNCITGLARQRSDKQCSSLLARPVDCSK 374

Query:   375 DVC 377
               C
Sbjct:   375 FGC 377

GO:0009927 "histidine phosphotransfer kinase activity" evidence=NAS

GO:0000904 "cell morphogenesis involved in differentiation" evidence=IMP

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0010054 "trichoblast differentiation" evidence=RCA;IMP

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2121348 AT4G28380 [Arabidopsis thaliana (taxid:3702)]

 Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
 Identities = 155/303 (51%), Positives = 197/303 (65%)

Query:    76 NWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNR 135
             +WVG  VCSY G+FCAP+P N N  VVAGIDLN  DIAG+ P  +G LSDLAL H+NSNR
Sbjct:    66 DWVGPSVCSYTGIFCAPSPSNPNTLVVAGIDLNHGDIAGFLPEAIGLLSDLALIHLNSNR 125

Query:   136 FCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM 195
             FCGI+P S +N  L+YE D+SNNR VG FP+V L+  SL+YLDLRYN FEG +P +LF  
Sbjct:   126 FCGILPRSFANLSLLYELDLSNNRFVGPFPDVVLALPSLKYLDLRYNEFEGPLPPKLFSN 185

Query:   196 KLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPN-VNEIILSNNDL 254
              LDAIF+NNNR +S IP     +T SVV FA+N+FSGC+P +I    + + E++L N+ L
Sbjct:   186 PLDAIFVNNNRLTSLIPRDFTGTTASVVVFANNDFSGCLPPTIARFADTLEELLLINSSL 245

Query:   255 MGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLP 314
              GCLP E+G+L KL V D S NS  G VP S + L  + +L L +N  TG V   +C LP
Sbjct:   246 SGCLPPEVGYLYKLRVLDMSYNSLVGPVPYSLAGLGHLEQLNLEHNMFTGTVPLGVCVLP 305

Query:   315 NINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWATTCSPVVSNPVDCSK 374
             ++ N T SYNYF      C   +  G   DD  NCL  +P Q+    C  V+ +P+DC  
Sbjct:   306 SLLNVTVSYNYFSEEEGICRNLTSRGIAIDDRYNCLPDKPLQRPQKVCDAVLEHPIDCYD 365

Query:   375 DVC 377
               C
Sbjct:   366 HEC 368

GO:0005576 "extracellular region" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2094389 AT3G22800 "AT3G22800" [Arabidopsis thaliana (taxid:3702)]

 Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
 Identities = 148/304 (48%), Positives = 206/304 (67%)

Query:    76 NWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNR 135
             NW G +VC+Y GVFCAPA DN  +  VAGIDLN  +IAGY P ELG L+DLALFH+NSNR
Sbjct:    75 NWCGPNVCNYTGVFCAPALDNPYVLTVAGIDLNHANIAGYLPLELGLLTDLALFHINSNR 134

Query:   136 FCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM 195
             F G +P++L    L++E DVSNN+L G FP+V  S  SL++LD+R+N F+G+VP +LF +
Sbjct:   135 FQGQLPKTLKCLHLLHELDVSNNKLSGEFPSVIFSLPSLKFLDIRFNEFQGDVPSQLFDL 194

Query:   196 KLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSG-CVPRSIGNM-PNVNEIILSNND 253
              LDA+F+N+N+F   +P  IG S VSV+  A+N+  G CVP S   M   ++EII++N+ 
Sbjct:   195 NLDALFINDNKFQFRLPRNIGNSPVSVLVLANNDLQGSCVPPSFYKMGKTLHEIIITNSQ 254

Query:   254 LMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKL 313
             L GCL  EIG L +LTVFD S N+  GS+P++   ++S+ +L +++N+ +GY+ E IC+L
Sbjct:   255 LTGCLNREIGLLNQLTVFDVSYNNLVGSLPETIGDMKSLEQLNIAHNKFSGYIPESICRL 314

Query:   314 PNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWATTCSPVVSNPVDCS 373
             P + NFT+SYN+F G    C+   +    FDD  NCL  RP Q+    C    S P+DC+
Sbjct:   315 PRLENFTYSYNFFSGEPPACLRLQE----FDDRRNCLPSRPMQRSLAECKSFSSYPIDCA 370

Query:   374 KDVC 377
                C
Sbjct:   371 SFGC 374

GO:0005199 "structural constituent of cell wall" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O81765	PLRX4_ARATH	No assigned EC number	0.5340	0.8614	0.6494	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: AT4G33970 protein binding / structural constituent of cell wall; protein binding / structural constituent of cell wall; FUNCTIONS IN- structural constituent of cell wall, protein binding; LOCATED IN- endomembrane system; EXPRESSED IN- 6 plant structures; EXPRESSED DURING- L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s- Leucine-rich repeat, N-terminal (InterPro-IPR013210), Leucine-rich repeat (InterPro-IPR001611); BEST Arabidopsis thaliana protein match is- leucine-rich repeat family protein / extensin family protein (TAIR-AT2G15880.1); Has 278485 Blast h [...] (699 aa) (Arabidopsis thaliana)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	527
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-28
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-27
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-24
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-18
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-18
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-17
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-15
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-15
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-15
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	7e-15
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-14
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-14
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-13
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-13
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-13
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	3e-13
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-13
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-13
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-13
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-13
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-13
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-12
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-12
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-12
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-12
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-12
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-12
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-12
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	3e-11
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	4e-11
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	5e-11
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	7e-11
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	9e-11
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	1e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-10
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-10
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-10
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-10
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	2e-10
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-10
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	3e-10
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-10
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	7e-10
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-09
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	1e-09
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	1e-09
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	5e-09
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-08
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	1e-08
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-08
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-08
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	3e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-08
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	5e-08
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	6e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	7e-08
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	1e-07
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-07
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	2e-07
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	2e-07
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	3e-07
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	3e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-07
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	5e-07
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	6e-07
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	6e-07
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	9e-07
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	9e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	9e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-06
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	1e-06
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	1e-06
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
COG3147	226	COG3147, DedD, Uncharacterized protein conserved i	1e-06
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	1e-06
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-06
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-06
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	2e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	3e-06
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	3e-06
PHA02682	280	PHA02682, PHA02682, ORF080 virion core protein; Pr	4e-06
TIGR01628	562	TIGR01628, PABP-1234, polyadenylate binding protei	4e-06
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	5e-06
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	5e-06
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	5e-06
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	5e-06
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	6e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-06
PRK12727	559	PRK12727, PRK12727, flagellar biosynthesis regulat	7e-06
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	8e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	8e-06
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	9e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	1e-05
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	1e-05
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-05
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	1e-05
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	1e-05
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	1e-05
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	1e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-05
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	2e-05
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	2e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	2e-05
PRK09752	1250	PRK09752, PRK09752, adhesin; Provisional	2e-05
PHA03379	935	PHA03379, PHA03379, EBNA-3A; Provisional	2e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	2e-05
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	2e-05
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	2e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-05
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	3e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-05
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	3e-05
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	3e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-05
PRK12727	559	PRK12727, PRK12727, flagellar biosynthesis regulat	4e-05
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	4e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-05
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	5e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-05
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	5e-05
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	6e-05
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	6e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	6e-05
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	6e-05
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	6e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-05
pfam03326	500	pfam03326, Herpes_TAF50, Herpesvirus transcription	7e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	8e-05
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	8e-05
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	8e-05
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	8e-05
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	8e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	9e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	9e-05
PRK12727	559	PRK12727, PRK12727, flagellar biosynthesis regulat	9e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	9e-05
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	9e-05
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	1e-04
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	1e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-04
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	1e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	1e-04
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	1e-04
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	1e-04
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	1e-04
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	1e-04
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	1e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	2e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-04
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	2e-04
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	2e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	2e-04
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	2e-04
PHA03369	663	PHA03369, PHA03369, capsid maturational protease;	2e-04
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	2e-04
PHA03264	416	PHA03264, PHA03264, envelope glycoprotein D; Provi	2e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-04
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	3e-04
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	3e-04
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	3e-04
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	3e-04
PRK13729	475	PRK13729, PRK13729, conjugal transfer pilus assemb	3e-04
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	3e-04
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	3e-04
COG3147	226	COG3147, DedD, Uncharacterized protein conserved i	4e-04
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	4e-04
PRK08691	709	PRK08691, PRK08691, DNA polymerase III subunits ga	4e-04
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	4e-04
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	5e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	5e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	5e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-04
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	6e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	6e-04
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	6e-04
PHA03377	1000	PHA03377, PHA03377, EBNA-3C; Provisional	6e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	7e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	7e-04
PHA03369	663	PHA03369, PHA03369, capsid maturational protease;	7e-04
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	7e-04
PRK10905	328	PRK10905, PRK10905, cell division protein DamX; Va	7e-04
COG3921	300	COG3921, COG3921, Uncharacterized protein conserve	7e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	8e-04
PHA03379	935	PHA03379, PHA03379, EBNA-3A; Provisional	8e-04
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	8e-04
COG3087	264	COG3087, FtsN, Cell division protein [Cell divisio	8e-04
pfam06070	777	pfam06070, Herpes_UL32, Herpesvirus large structur	8e-04
PHA02682	280	PHA02682, PHA02682, ORF080 virion core protein; Pr	9e-04
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	9e-04
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	9e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.001
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	0.001
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.001
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.001
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	0.001
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	0.001
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.001
PHA03291	401	PHA03291, PHA03291, envelope glycoprotein I; Provi	0.001
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	0.001
pfam09483	185	pfam09483, HpaP, Type III secretion protein (HpaP)	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.002
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.002
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.002
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.002
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	0.002
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.002
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	0.002
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	0.002
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	0.002
PRK13729	475	PRK13729, PRK13729, conjugal transfer pilus assemb	0.002
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	0.002
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	0.002
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	0.002
pfam05466	233	pfam05466, BASP1, Brain acid soluble protein 1 (BA	0.002
TIGR02813	2582	TIGR02813, omega_3_PfaA, polyketide-type polyunsat	0.002
PTZ00441	576	PTZ00441, PTZ00441, sporozoite surface protein 2 (	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.002
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	0.002
PRK06549	130	PRK06549, PRK06549, acetyl-CoA carboxylase biotin	0.002
pfam12737	418	pfam12737, Mating_C, C-terminal domain of homeodom	0.002
PRK14949	944	PRK14949, PRK14949, DNA polymerase III subunits ga	0.002
PRK12799	421	PRK12799, motB, flagellar motor protein MotB; Revi	0.002
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	0.003
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	0.003
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.003
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.003
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	0.003
COG3087	264	COG3087, FtsN, Cell division protein [Cell divisio	0.003
pfam12868	135	pfam12868, DUF3824, Domain of unknwon function (DU	0.003
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.004
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.004
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.004
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.004
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	0.004
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	0.004
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	0.004
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	0.004
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	0.004
PHA03291	401	PHA03291, PHA03291, envelope glycoprotein I; Provi	0.004
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	0.004
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	0.004
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	0.004
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	0.004
PRK00708	209	PRK00708, PRK00708, sec-independent translocase; P	0.004
cd07219	382	cd07219, Pat_PNPLA1, Patatin-like phospholipase do	0.004
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  118 bits (296), Expect = 8e-28
 Identities = 83/282 (29%), Positives = 135/282 (47%), Gaps = 17/282 (6%)

Query: 52  NEKHMLLSKHSRRPYIRTRLTRQGNWVGT-DVCSYYGVFCAPAPDNSNITVVAGIDLNGN 110
            E  +LLS  S    I   L    NW  + DVC + G+ C      +N + V  IDL+G 
Sbjct: 29  EELELLLSFKSS---INDPLKYLSNWNSSADVCLWQGITC------NNSSRVVSIDLSGK 79

Query: 111 DIAGYFPAELGWLSDLALFHVNSNRFCGIIPESL--SNWKLIYEFDVSNNRLVGSFPNVC 168
           +I+G   + +  L  +   ++++N+  G IP+ +  ++  L Y  ++SNN   GS P   
Sbjct: 80  NISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRY-LNLSNNNFTGSIPRGS 138

Query: 169 LSWTSLRYLDLRYNNFEGEVPREL-FKMKLDAIFLNNNRFSSWIPETIGE-STVSVVTFA 226
           +   +L  LDL  N   GE+P ++     L  + L  N     IP ++   +++  +T A
Sbjct: 139 IP--NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196

Query: 227 HNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSF 286
            N   G +PR +G M ++  I L  N+L G +P EIG L  L   D   N+  G +P S 
Sbjct: 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256

Query: 287 SSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQG 328
            +L+++  L L  N+L+G +   I  L  + +   S N   G
Sbjct: 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  116 bits (291), Expect = 3e-27
 Identities = 72/236 (30%), Positives = 119/236 (50%), Gaps = 10/236 (4%)

Query: 97  SNITVVAGIDLNGNDIAGYFPAEL---GWLSDLALFHVNSNRFCGIIPESLSNWKLIYEF 153
           +N+TV   +DL+ N++ G  P  L   G L  L LF   SN   G IP+SL   + +   
Sbjct: 356 NNLTV---LDLSTNNLTGEIPEGLCSSGNLFKLILF---SNSLEGEIPKSLGACRSLRRV 409

Query: 154 DVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM-KLDAIFLNNNRFSSWIP 212
            + +N   G  P+       + +LD+  NN +G +    + M  L  + L  N+F   +P
Sbjct: 410 RLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469

Query: 213 ETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFD 272
           ++ G   +  +  + N FSG VPR +G++  + ++ LS N L G +P E+   KKL   D
Sbjct: 470 DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD 529

Query: 273 ASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQG 328
            S N   G +P SFS +  + +L LS NQL+G + + +  + ++     S+N+  G
Sbjct: 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  106 bits (266), Expect = 4e-24
 Identities = 77/277 (27%), Positives = 115/277 (41%), Gaps = 56/277 (20%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLS---NWKLIYEFDVSNNRLV 161
           +DL GN + G  P  L  L+ L    + SN+  G IP  L    + K IY   +  N L 
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY---LGYNNLS 225

Query: 162 GSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMK-LDAIFLNNNRFSSWIPETI----- 215
           G  P      TSL +LDL YNN  G +P  L  +K L  +FL  N+ S  IP +I     
Sbjct: 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQK 285

Query: 216 ------------GE--------STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLM 255
                       GE          + ++    NNF+G +P ++ ++P +  + L +N   
Sbjct: 286 LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345

Query: 256 GCLPSEIGWLKKLTVFDASSNSFYG------------------------SVPQSFSSLES 291
           G +P  +G    LTV D S+N+  G                         +P+S  +  S
Sbjct: 346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405

Query: 292 IHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQG 328
           + R+ L  N  +G +  +  KLP +     S N  QG
Sbjct: 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG 442

Length = 968

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 88.1 bits (218), Expect = 4e-18
 Identities = 53/183 (28%), Positives = 64/183 (34%), Gaps = 3/183 (1%)

Query: 346  TSNCLAQRPSQKWATTCSPVVSNPVDCSKDVCLGGGSPPSAPSTPPKPST-PTPTPAPEQ 404
            T+   A  P    A      ++ P   S          P  P+ PP     P     P  
Sbjct: 2763 TAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAA 2822

Query: 405  RTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPE 464
                P PP  S  P   P P  P P  LP   S   P  + R R  +     +P+APA  
Sbjct: 2823 SPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSV-APGGDVRRRPPSRSPAAKPAAPARP 2881

Query: 465  PSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSP 524
            P + L  P     +   + PP  P     P  P    P P Q PPPP P   PPPP    
Sbjct: 2882 PVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQP-QPPPPPQPQPPPPPPPRPQ 2940

Query: 525  PPP 527
            PP 
Sbjct: 2941 PPL 2943

Length = 3151

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 86.8 bits (215), Expect = 8e-18
 Identities = 57/203 (28%), Positives = 88/203 (43%), Gaps = 27/203 (13%)

Query: 107 LNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPN 166
           L  N + G  P  LG    L    +  N F G +P   +   L+Y  D+SNN L G   +
Sbjct: 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS 446

Query: 167 VCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIG---------- 216
                 SL+ L L  N F G +P      +L+ + L+ N+FS  +P  +G          
Sbjct: 447 RKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKL 506

Query: 217 ----------------ESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPS 260
                           +  VS+   +HN  SG +P S   MP ++++ LS N L G +P 
Sbjct: 507 SENKLSGEIPDELSSCKKLVSL-DLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565

Query: 261 EIGWLKKLTVFDASSNSFYGSVP 283
            +G ++ L   + S N  +GS+P
Sbjct: 566 NLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 84.2 bits (208), Expect = 6e-17
 Identities = 40/163 (24%), Positives = 54/163 (33%), Gaps = 19/163 (11%)

Query: 384  PSAPSTPPKPSTPT--PTPAPEQRTPTPAPPTPSPPPPPTPKP-----------LTPVPT 430
            P AP    +P  P            P+P PP    P PP P P              VP 
Sbjct: 2589 PDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPP 2648

Query: 431  PLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLP 490
            P  P + P P   +   R+    +  + S+P   P +    P     +S+   PPP P P
Sbjct: 2649 PERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTP 2708

Query: 491  QSPPPPPSVKYPPPV------QSPPPPTPVQSPPPPVHSPPPP 527
            +  P       P P       Q+ P      +PP     P  P
Sbjct: 2709 EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATP 2751

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 80.0 bits (197), Expect = 1e-15
 Identities = 49/167 (29%), Positives = 54/167 (32%), Gaps = 22/167 (13%)

Query: 380  GGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPT------------------PSPPPPPT 421
            GG  P  P  PP PS   P   P++    P  P                   P PP PP 
Sbjct: 2499 GGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPPLPPA 2558

Query: 422  PKPLTP---VPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPS 478
              P  P   VP P P      P   +   R   PPQ  RP AP  +   P  P     P 
Sbjct: 2559 APPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPA-PPSPL 2617

Query: 479  SVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPP 525
               +  P  P P   P        PP   PPP  P   P P   S P
Sbjct: 2618 PPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRP 2664

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 79.2 bits (195), Expect = 2e-15
 Identities = 43/152 (28%), Positives = 47/152 (30%), Gaps = 11/152 (7%)

Query: 383  PPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTP--------KPLTPVPTPLPP 434
               A + PP  S   P P P    PT  PP P PPPP  P          +   P    P
Sbjct: 2812 LAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSP 2871

Query: 435  VNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPP 494
               P  P R   VR    P   R +     P      P Q          P  P P  P 
Sbjct: 2872 AAKPAAPARP-PVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQ 2930

Query: 495  PPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPP 526
            PPP    PP  Q P  PT   +         P
Sbjct: 2931 PPP--PPPPRPQPPLAPTTDPAGAGEPSGAVP 2960

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 78.4 bits (193), Expect = 4e-15
 Identities = 40/151 (26%), Positives = 50/151 (33%), Gaps = 5/151 (3%)

Query: 379  GGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSP 438
               + P+ P+ P  P+ P     P        PPT + PP P P P  P   P  P    
Sbjct: 2728 ARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAP-PAAPAAGP--PRRLT 2784

Query: 439  NPPPRNWRVRSHTPPQPWRPSAP--APEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPP 496
             P   +      + P PW P+ P  A       LPP   P   +       P    PPP 
Sbjct: 2785 RPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPG 2844

Query: 497  PSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
            P     P   S  P   V+  PP       P
Sbjct: 2845 PPPPSLPLGGSVAPGGDVRRRPPSRSPAAKP 2875

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 77.2 bits (190), Expect = 7e-15
 Identities = 37/161 (22%), Positives = 50/161 (31%), Gaps = 17/161 (10%)

Query: 382 SPPSAPSTPPKPSTPTPTPAPEQRTPTPAP-------------PTPSPPPPPTPKPLTPV 428
           +PP+AP+  P  +      A      +PAP             P  +P P P P    P 
Sbjct: 401 APPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAA-APA 459

Query: 429 PTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPL--LPPVQYPPSSVQSTPPP 486
               P    P P        +     P    APA +   P   LPP    P+  Q    P
Sbjct: 460 AAARPAAAGPRPVAAA-AAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAP 518

Query: 487 SPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
           +       P P+   P        P P  +P P   +   P
Sbjct: 519 AGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEP 559

Length = 700

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 76.9 bits (189), Expect = 1e-14
 Identities = 49/196 (25%), Positives = 63/196 (32%), Gaps = 22/196 (11%)

Query: 351  AQRPSQKWATTCSPVVSNPVDCSKDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPA 410
            A  P Q+     +      +    D      +P  AP      +TP P      R  +PA
Sbjct: 2676 ASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAP-HALVSATPLPPGPAAARQASPA 2734

Query: 411  PP-TPSPPPPPT-----------PKPLTPV--PTPLPPVNSPNPPPRNWRVRSHTPPQPW 456
             P  P+PP  P             +P T    P P PP      PPR     +       
Sbjct: 2735 LPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSES 2794

Query: 457  RPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQ- 515
            R S P+  P  P  PP      +    P  SP    PPP  +    PP    PPP  +  
Sbjct: 2795 RESLPS--PWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPL 2852

Query: 516  ----SPPPPVHSPPPP 527
                +P   V   PP 
Sbjct: 2853 GGSVAPGGDVRRRPPS 2868

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 76.2 bits (188), Expect = 2e-14
 Identities = 29/149 (19%), Positives = 38/149 (25%)

Query: 379 GGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSP 438
            G +    P  P     P     P       AP  P+P                      
Sbjct: 592 PGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPE 651

Query: 439 NPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPS 498
           + P       +      W   A    P+ P   P    P++     P  P P     PP+
Sbjct: 652 HHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPA 711

Query: 499 VKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
            +   P   PP      S P P    P P
Sbjct: 712 GQADDPAAQPPQAAQGASAPSPAADDPVP 740

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 75.3 bits (185), Expect = 3e-14
 Identities = 36/149 (24%), Positives = 46/149 (30%), Gaps = 3/149 (2%)

Query: 379 GGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSP 438
           GGG+ P+  +  P         AP    P PA P  +P   P            P   SP
Sbjct: 369 GGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSP 428

Query: 439 NPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPS 498
            P       R  +   P    APAP P     P     P++    P  +    +P     
Sbjct: 429 APEALA-AARQASARGPGGAPAPAPAP--AAAPAAAARPAAAGPRPVAAAAAAAPARAAP 485

Query: 499 VKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
              P P    PPP     P     +P  P
Sbjct: 486 AAAPAPADDDPPPWEELPPEFASPAPAQP 514

Length = 700

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 73.0 bits (179), Expect = 2e-13
 Identities = 48/158 (30%), Positives = 86/158 (54%), Gaps = 3/158 (1%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           +D++ N++ G   +    +  L +  +  N+F G +P+S  + +L    D+S N+  G+ 
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRL-ENLDLSRNQFSGAV 491

Query: 165 PNVCLSWTSLRYLDLRYNNFEGEVPRELFKMK-LDAIFLNNNRFSSWIPETIGESTV-SV 222
           P    S + L  L L  N   GE+P EL   K L ++ L++N+ S  IP +  E  V S 
Sbjct: 492 PRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQ 551

Query: 223 VTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPS 260
           +  + N  SG +P+++GN+ ++ ++ +S+N L G LPS
Sbjct: 552 LDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 73.0 bits (179), Expect = 2e-13
 Identities = 42/182 (23%), Positives = 52/182 (28%), Gaps = 15/182 (8%)

Query: 351  AQRPSQKWATTCSPVVSNPVDCSKDV----CLGGGSPPSAP-STPPKPSTPTPTPAPEQR 405
            A  P+       S   + P            LGG   P       P   +P   PA   R
Sbjct: 2821 AASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPAR 2880

Query: 406  TPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEP 465
             P      P+         L P     PP     PPP+         PQP  P  P P P
Sbjct: 2881 PPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQ-------PQPQPPPPPQPQPPP 2933

Query: 466  SKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPP 525
              P  P     P    + P  +  P    P P +    P +   P   V  P P   +P 
Sbjct: 2934 PPPPRPQPPLAP---TTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPA 2990

Query: 526  PP 527
              
Sbjct: 2991 SS 2992

Length = 3151

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 27/136 (19%), Positives = 34/136 (25%), Gaps = 13/136 (9%)

Query: 379 GGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSP 438
              +   A    P        PA        A P P+  P          P   PP    
Sbjct: 369 AAEAAAPAEKKTPARPEA-AAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVA 427

Query: 439 NPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYP-PSSVQSTPPPSPLPQSPPPPP 497
            P            P     +APA     P  P    P   ++     P P   S  P P
Sbjct: 428 APAAA--------APAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479

Query: 498 SVKYPPPVQSPPPPTP 513
           +     P  +   PT 
Sbjct: 480 A---AAPAAARLTPTE 492

Length = 618

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 72.2 bits (178), Expect = 3e-13
 Identities = 30/151 (19%), Positives = 38/151 (25%), Gaps = 6/151 (3%)

Query: 383 PPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPP 442
           P +    P  P       A  Q T  P      P  P  P P    P   P V  P    
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Query: 443 RNWRVRSHTPPQPWRPSAPAPEPSKPL----LPPVQYPPSSVQSTPPPSPLPQSPPPPPS 498
           +    R           A   EP+       +       +SV+  P       +      
Sbjct: 421 QLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYR 480

Query: 499 VKYPPPVQSPPPP--TPVQSPPPPVHSPPPP 527
            K   PV+    P  TP        H   P 
Sbjct: 481 WKATNPVEVKKEPVATPKALKKALEHEKTPE 511

Length = 647

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 72.5 bits (178), Expect = 3e-13
 Identities = 42/189 (22%), Positives = 58/189 (30%), Gaps = 5/189 (2%)

Query: 335 PGSKEGGVFDDTSNCLAQRPSQKWATTCSPVVSNPVDCSKDVCLGGGSPPSAPSTPPKPS 394
             S   G     S  LA       A  C                   +   +  T    S
Sbjct: 35  LLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWS-LS 93

Query: 395 TPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSP----NPPPRNWRVRSH 450
           T  P     + +PTP  P+   PPPPTP P +P P+P P ++        P         
Sbjct: 94  TLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPP 153

Query: 451 TPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPP 510
                    A     S+    P+  P  + ++   P   P    PP +    PP +S P 
Sbjct: 154 AAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPI 213

Query: 511 PTPVQSPPP 519
                SP P
Sbjct: 214 SASASSPAP 222

Length = 1352

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 72.3 bits (177), Expect = 4e-13
 Identities = 38/151 (25%), Positives = 47/151 (31%), Gaps = 22/151 (14%)

Query: 381  GSPPSAPSTPPKP-----STPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPV 435
             SP + P+ P +P     + P  + + E     P  P   P P   P P      P PP 
Sbjct: 2869 RSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQ 2928

Query: 436  NSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPP 495
              P PPP     R   P  P    A A EPS          P      P    +P+   P
Sbjct: 2929 PQPPPPPPP---RPQPPLAPTTDPAGAGEPS-----GAVPQPWLGALVPGRVAVPRFRVP 2980

Query: 496  PPSVKYPPPVQSPPPPTPVQSPPPPVHSPPP 526
             P         +P    P  S PP       
Sbjct: 2981 QP---------APSREAPASSTPPLTGHSLS 3002

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 71.2 bits (175), Expect = 6e-13
 Identities = 27/149 (18%), Positives = 38/149 (25%)

Query: 379 GGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSP 438
                 +AP+         P               P+      P    P P P  P    
Sbjct: 635 APAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPA 694

Query: 439 NPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPS 498
              P          P   +   PA +P +         P++    P P      P P  +
Sbjct: 695 GAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGA 754

Query: 499 VKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
              PPP  +P P     + PPP       
Sbjct: 755 PAQPPPPPAPAPAAAPAAAPPPSPPSEEE 783

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 70.8 bits (174), Expect = 7e-13
 Identities = 29/145 (20%), Positives = 36/145 (24%), Gaps = 6/145 (4%)

Query: 384 PSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPR 443
           PSA                E+R              P+     P   P P   +P     
Sbjct: 365 PSASDDER--GLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAA 422

Query: 444 NWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQS-TPPPSPLPQSPPPPPSVKYP 502
                +  P     P+     PS     P    PS   +  P   P P     P     P
Sbjct: 423 --PAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAP 480

Query: 503 PPVQSPPPPTPVQSPPPPVHSPPPP 527
            P   P  P P  +P  P     P 
Sbjct: 481 AP-APPAAPAPAAAPAAPAAPAAPA 504

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 71.1 bits (174), Expect = 8e-13
 Identities = 44/174 (25%), Positives = 56/174 (32%), Gaps = 25/174 (14%)

Query: 379  GGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVP------TPL 432
               SPP  P       T     +     P P  P P+P    +  PL P P      +P 
Sbjct: 2675 QASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPA 2734

Query: 433  PPVNSPNPPPRNWRVRSHTPPQPWRPSAPA--PEPSKPLLPPVQYPP-------SSVQST 483
             P     P           P +P RP   A  P P+ P  P    P        +S+  +
Sbjct: 2735 LPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSES 2794

Query: 484  PPPSPLPQSPPPPPSVKYP----------PPVQSPPPPTPVQSPPPPVHSPPPP 527
                P P  P  PP+              P    PPP +   + PPP   PPPP
Sbjct: 2795 RESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPP 2848

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 70.7 bits (173), Expect = 1e-12
 Identities = 46/165 (27%), Positives = 60/165 (36%), Gaps = 20/165 (12%)

Query: 383  PPSAPSTPPKPSTPTPTPAPEQRTPT--------PAPPTPSPPP----PPTPKPLTPVPT 430
            PP+AP   P  S P P PAP    P          APP  + P               P+
Sbjct: 2556 PPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPS 2615

Query: 431  PLPP-VNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPL 489
            PLPP  ++P+PPP +    ++ P     P+ P PE  +    P +            +  
Sbjct: 2616 PLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQ 2675

Query: 490  PQSPPPPPSVK-YPPPVQS------PPPPTPVQSPPPPVHSPPPP 527
              SPP  P  +   P V S      PPPP P   P P       P
Sbjct: 2676 ASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATP 2720

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 70.0 bits (172), Expect = 1e-12
 Identities = 30/149 (20%), Positives = 42/149 (28%), Gaps = 23/149 (15%)

Query: 378 LGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNS 437
           L      +  +  P  + P+   A       PAP   +P     P P             
Sbjct: 381 LERRLGVAGGAGAPAAAAPSAAAAA--PAAAPAPAAAAPAAAAAPAP--------AAAPQ 430

Query: 438 PNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPP 497
           P P P          P P    AP              PP +   +  P+P P + P P 
Sbjct: 431 PAPAP---------APAP----APPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPT 477

Query: 498 SVKYPPPVQSPPPPTPVQSPPPPVHSPPP 526
           +   P P  +P P     +P  P      
Sbjct: 478 AAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 70.1 bits (172), Expect = 1e-12
 Identities = 26/145 (17%), Positives = 34/145 (23%), Gaps = 23/145 (15%)

Query: 383 PPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPP 442
           P +A          TP        P  A P  +P          P P   P   +  P  
Sbjct: 366 PAAAAEAAAPAEKKTPAR------PEAAAPAAAPVAQA---AAAPAPAAAPAAAASAPAA 416

Query: 443 RNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYP 502
                     P    P AP   P      P   P ++  +       P      P     
Sbjct: 417 ----------PPAAAPPAPVAAP--AAAAPAAAPAAAPAAVALAPAPP--AQAAPETVAI 462

Query: 503 PPVQSPPPPTPVQSPPPPVHSPPPP 527
           P   +P P     +P P        
Sbjct: 463 PVRVAPEPAVASAAPAPAAAPAAAR 487

Length = 618

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 35/139 (25%), Positives = 43/139 (30%), Gaps = 13/139 (9%)

Query: 389 TPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVR 448
             P P  P      +    T       P     P   +P   P      P+ P       
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPS 205

Query: 449 SHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSP 508
           S +      P AP+             PP S +S   PSP P    PPP    PP  Q P
Sbjct: 206 SPSDSSL--PPAPSS-------FQSDTPPPSPESPTNPSPPPGPAAPPP----PPVQQVP 252

Query: 509 PPPTPVQSPPPPVHSPPPP 527
           P  T   +PP    +P P 
Sbjct: 253 PLSTAKPTPPSASATPAPI 271

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 69.2 bits (169), Expect = 3e-12
 Identities = 36/144 (25%), Positives = 50/144 (34%), Gaps = 5/144 (3%)

Query: 385  SAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRN 444
                   + S+P   P      PT    T    PPP P    P P P   V++   PP  
Sbjct: 2668 RRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPT--PEPAPHALVSATPLPPGP 2725

Query: 445  WRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQ--STPPPSPLPQSPPPPPSVKYP 502
               R  +P  P  P+ PA  P+ P  P     P+     + PP    P +P   P  +  
Sbjct: 2726 AAARQASPALPAAPAPPAV-PAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLT 2784

Query: 503  PPVQSPPPPTPVQSPPPPVHSPPP 526
             P  +    +    P P   + PP
Sbjct: 2785 RPAVASLSESRESLPSPWDPADPP 2808

Length = 3151

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 69.0 bits (169), Expect = 3e-12
 Identities = 44/168 (26%), Positives = 49/168 (29%), Gaps = 22/168 (13%)

Query: 382 SPPSAPSTPPKPSTPT-------------PTPAPEQRTPTPAPPTPSPPPPPTPKPLTPV 428
            PP AP + P+P TP                     + P P         PP        
Sbjct: 135 QPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQ 194

Query: 429 PTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQST----- 483
             P  P   P PP  +          P    APA  P  P LP    P    Q       
Sbjct: 195 GPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQ 254

Query: 484 ---PPPSPLPQSPPPPPSVKYPPPVQSPPP-PTPVQSPPPPVHSPPPP 527
              PPP P  Q   PP     PPP   P P P   Q    P+  P  P
Sbjct: 255 MPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQP 302

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 68.5 bits (168), Expect = 4e-12
 Identities = 31/152 (20%), Positives = 39/152 (25%), Gaps = 6/152 (3%)

Query: 380 GGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPN 439
                +AP+       P              P           K     P   PP  +P 
Sbjct: 629 PAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPA 688

Query: 440 PPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPP--- 496
            P       +   P P   + P    +               S P P+     P PP   
Sbjct: 689 APAAP-AGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQG-ASAPSPAADDPVPLPPEPD 746

Query: 497 -PSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
            P      P Q PPPP P  +  P    PP P
Sbjct: 747 DPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSP 778

Length = 824

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 34/147 (23%), Positives = 45/147 (30%), Gaps = 24/147 (16%)

Query: 382 SPPSAPSTPPKPSTPTPTP--APEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPN 439
               AP+   +     P+P    +    +  P  P   PP    P    P P  P   P 
Sbjct: 70  RVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPV 129

Query: 440 PPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSV 499
             P                    P+P +PL  PV       Q  P P P+  +P P    
Sbjct: 130 QQPAY-----------------QPQPEQPLQQPVS-----PQVAPAPQPVHSAPQPAQQA 167

Query: 500 KYPPPVQSPPPPTPVQSPPPPVHSPPP 526
             P    + P P PV  P P +  P  
Sbjct: 168 FQPAEPVAAPQPEPVAEPAPVMDKPKR 194

Length = 333

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 64.3 bits (157), Expect = 4e-11
 Identities = 31/125 (24%), Positives = 40/125 (32%), Gaps = 11/125 (8%)

Query: 403 EQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPA 462
           E R         +       +P +P     PP  S  P           PP+   P   A
Sbjct: 65  EVRVHRVNHAPANAQEHEAARP-SPQHQYQPPYASAQPRQP-----VQQPPEAQVPPQHA 118

Query: 463 PEPSKPLLPPVQYPPSSVQSTPPP-SPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPV 521
           P P++P   PVQ P    Q   P   P+     P P   +      P P      P  PV
Sbjct: 119 PRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSA----PQPAQQAFQPAEPV 174

Query: 522 HSPPP 526
            +P P
Sbjct: 175 AAPQP 179

Length = 333

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 65.5 bits (159), Expect = 5e-11
 Identities = 30/152 (19%), Positives = 41/152 (26%), Gaps = 11/152 (7%)

Query: 385 SAPSTP--PKPSTPTPTPAPEQRT----PTPAPPTPSPPPPPTPKPLTPVP---TPLPPV 435
           +AP  P    P   +    P Q T    P P P T  P   P P+          P    
Sbjct: 334 AAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQY 393

Query: 436 NSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPP 495
           N P   P   +   + P        P   P+     P Q P  +     P +        
Sbjct: 394 NEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPE--QPAQQPYYAPAPEQPVAGNAWQAEE 451

Query: 496 PPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
             S   P             +   P++  P P
Sbjct: 452 QQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQP 483

Length = 1355

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 64.8 bits (158), Expect = 7e-11
 Identities = 43/187 (22%), Positives = 59/187 (31%), Gaps = 9/187 (4%)

Query: 344 DDTSNCLAQRPSQKWATTCSPVVSNPVDCSKDVCLGGGS---PPSAPSTPPKPSTPTPTP 400
            D ++ L      +  +  + + +  V      C        PP  P T    +    TP
Sbjct: 29  GDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTP 88

Query: 401 APEQRTPTPAPPTPSP---PPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWR 457
                T  PA P       PP P+     P PTP P    P+P P    +          
Sbjct: 89  TWSLSTLAPASPAREGSPTPPGPSSPD-PPPPTPPPASPPPSPAPDLSEMLRPVGSPGPP 147

Query: 458 PSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSP 517
           P+A  P              SS Q+  P S   ++   P S    PP  +PP        
Sbjct: 148 PAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAAS--PR 205

Query: 518 PPPVHSP 524
           PP   SP
Sbjct: 206 PPRRSSP 212

Length = 1352

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 64.1 bits (156), Expect = 9e-11
 Identities = 32/140 (22%), Positives = 44/140 (31%), Gaps = 3/140 (2%)

Query: 382 SPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPP 441
           S       P     P   PA   R     P   +      P    P   P P  + P PP
Sbjct: 440 SARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDP-PP 498

Query: 442 PRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKY 501
                    +P      +APA   ++ +  P    P     T  P+P   +P P  +   
Sbjct: 499 WEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAP-AAAPAPRAAAA- 556

Query: 502 PPPVQSPPPPTPVQSPPPPV 521
             PV +P PP    S  P +
Sbjct: 557 TEPVVAPRPPRASASGLPDM 576

Length = 700

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 64.0 bits (155), Expect = 1e-10
 Identities = 39/172 (22%), Positives = 48/172 (27%), Gaps = 3/172 (1%)

Query: 351 AQRPSQKWATTCSPVVSNPVDCSKDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPA 410
           A   +Q WA    PV   P   S DV      P  A    P P T  P  AP        
Sbjct: 326 ATTATQSWAAPVEPVTQTPPVASVDVPPA--QPTVAWQPVPGPQTGEPVIAPAPEGYPQQ 383

Query: 411 PPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLL 470
                P          PV    P        P      +  P QP +    AP P +P+ 
Sbjct: 384 SQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVA 443

Query: 471 P-PVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPV 521
               Q         P  +   +     P+ + P   Q  P        P PV
Sbjct: 444 GNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPV 495

Length = 1355

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.9 bits (153), Expect = 2e-10
 Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 23/167 (13%)

Query: 89  FCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWK 148
           F    PD+     +  +DL+ N  +G  P +LG LS+L    ++ N+  G IP+ LS+ K
Sbjct: 464 FFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK 523

Query: 149 LIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFS 208
            +   D+S+N+L G  P        L  LDL  N   GE+P+ L  +             
Sbjct: 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV------------- 570

Query: 209 SWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLM 255
                   ES V  V  +HN+  G +P S G    +N   ++ N  +
Sbjct: 571 --------ESLVQ-VNISHNHLHGSLP-STGAFLAINASAVAGNIDL 607

Length = 968

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 63.1 bits (154), Expect = 2e-10
 Identities = 36/148 (24%), Positives = 46/148 (31%), Gaps = 19/148 (12%)

Query: 380 GGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPN 439
           GG    A +    P+ P P PAP      PA P  + P  P P P        P   + +
Sbjct: 665 GGDGWPAKAGGAAPAAPPPAPAP----AAPAAPAGAAPAQPAPAP----AATPPAGQADD 716

Query: 440 PPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSV 499
           P  +  +              P P P +P  PP            P     Q PPPP   
Sbjct: 717 PAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPD-----------PAGAPAQPPPPPAPA 765

Query: 500 KYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
               P  +PPP  P +         P  
Sbjct: 766 PAAAPAAAPPPSPPSEEEEMAEDDAPSM 793

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 32/153 (20%), Positives = 42/153 (27%), Gaps = 25/153 (16%)

Query: 364 PVVSNPVD--CSKDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTP-APPTPSPPPPP 420
           P    P+D            S  S P     P++ +P+  P      P  P  P  P  P
Sbjct: 148 PNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 421 TPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSV 480
           +   L P P+                     PP P  P+ P+P P     P    PP   
Sbjct: 208 SDSSLPPAPSSFQS--------------DTPPPSPESPTNPSPPPG----PAAPPPPPVQ 249

Query: 481 QSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTP 513
           Q  P  +  P  P         P          
Sbjct: 250 QVPPLSTAKPTPPSASA----TPAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 62.9 bits (153), Expect = 2e-10
 Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 11/87 (12%)

Query: 451 TPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPP 510
             PQP +P+A AP P +P   P   P ++  +  PP   P      P    P PV  P P
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKE-PVRETATPPPVPPRPVAPPVP 422

Query: 511 PTPVQSPP----------PPVHSPPPP 527
            TP  +P            P ++PP P
Sbjct: 423 HTPESAPKLTRAAIPVDEKPKYTPPAP 449

Length = 585

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 62.9 bits (153), Expect = 2e-10
 Identities = 25/152 (16%), Positives = 32/152 (21%), Gaps = 13/152 (8%)

Query: 379 GGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPV---PTPLPPV 435
           GGG P       P P             P     T +      PK            PP 
Sbjct: 369 GGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPA 428

Query: 436 NSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPP 495
               P   +    +     P    A A   +               + PP      S P 
Sbjct: 429 APAPPATADRGDDAADGDAPVPAKANARASADS-------RCDERDAQPPADSGSASAPA 481

Query: 496 PPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
             +   PP     P P           + P  
Sbjct: 482 SDA---PPDAAFEPAPRAAAPSAATPAAVPDA 510

Length = 830

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 62.6 bits (152), Expect = 3e-10
 Identities = 31/149 (20%), Positives = 42/149 (28%), Gaps = 17/149 (11%)

Query: 379 GGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSP 438
            GG+P  AP+       P   PA   R     P   +      P    P   P P  + P
Sbjct: 444 PGGAPAPAPA-------PAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDP 496

Query: 439 NPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPS 498
            P    W         P   ++PAP                  +T  P    ++  P P+
Sbjct: 497 PP----WE------ELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPA 546

Query: 499 VKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
               P   +   P     PP    S  P 
Sbjct: 547 AAPAPRAAAATEPVVAPRPPRASASGLPD 575

Length = 700

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 62.5 bits (152), Expect = 3e-10
 Identities = 30/117 (25%), Positives = 32/117 (27%), Gaps = 29/117 (24%)

Query: 383 PPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPP 442
           P  A  T   PS   PTPAP  R P  A     PP  P  +  TP P P  PV  P P  
Sbjct: 366 PQPAKPTAAAPSPVRPTPAPSTR-PKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHT 424

Query: 443 RNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSV 499
                              +         PV   P               P PP   
Sbjct: 425 P-----------------ESAPKLTRAAIPVDEKPKYTP-----------PAPPKEE 453

Length = 585

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 62.6 bits (152), Expect = 4e-10
 Identities = 50/192 (26%), Positives = 53/192 (27%), Gaps = 51/192 (26%)

Query: 383  PPSAPSTPPKPSTPTPTP-APEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNP- 440
             P  P  P  P  P P P  P    P P PP P  P PP      P     P    P P 
Sbjct: 2904 QPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPW 2963

Query: 441  -----PPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQS-----------TP 484
                 P R    R   P     PS  AP  S P  P   +  S V S            P
Sbjct: 2964 LGALVPGRVAVPRFRVPQP--APSREAPASSTP--PLTGHSLSRVSSWASSLALHEETDP 3019

Query: 485  PPSPLPQ---------------------------SPPPPPSVKYPPPVQSPPPPTPVQS- 516
            PP  L Q                           +  P P   + P    P P TP    
Sbjct: 3020 PPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEPDPATPEAGA 3079

Query: 517  -PPPPVHSPPPP 527
               P     PPP
Sbjct: 3080 RESPSSQFGPPP 3091

Length = 3151

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 61.3 bits (149), Expect = 7e-10
 Identities = 33/146 (22%), Positives = 41/146 (28%), Gaps = 7/146 (4%)

Query: 381 GSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNP 440
              P     PP+       P      P+ AP  P P PP  P+   P+  P  P  S   
Sbjct: 197 PEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQP-PLPPQLPQQPPPLQQPQFPGLSQQM 255

Query: 441 PPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVK 500
           PP   +        P   + P P+            P   Q    P P PQ P   P V+
Sbjct: 256 PPPPPQPPQQQQQPPQPQAQPPPQNQPTP------HPGLPQGQNAPLPPPQQPQLLPLVQ 309

Query: 501 YPPPVQSPPPPTPVQSPPPPVHSPPP 526
            P   Q  P                 
Sbjct: 310 QPQGQQRGPQFREQLVQLSQQQREAL 335

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 60.6 bits (147), Expect = 1e-09
 Identities = 35/149 (23%), Positives = 43/149 (28%), Gaps = 8/149 (5%)

Query: 381 GSPPSA---PSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNS 437
           G PP     P   P    P     P+       P    P P   P    P+P  LP    
Sbjct: 183 GMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQP-PLPPQLPQQPP 241

Query: 438 PNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPP 497
           P   P+   +    PP P +P     +P      P   PP   Q TP P        P P
Sbjct: 242 PLQQPQFPGLSQQMPPPPPQPPQQQQQPP----QPQAQPPPQNQPTPHPGLPQGQNAPLP 297

Query: 498 SVKYPPPVQSPPPPTPVQSPPPPVHSPPP 526
             + P  +     P   Q  P        
Sbjct: 298 PPQQPQLLPLVQQPQGQQRGPQFREQLVQ 326

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 60.6 bits (147), Expect = 1e-09
 Identities = 28/104 (26%), Positives = 35/104 (33%), Gaps = 14/104 (13%)

Query: 386 APSTPPKPSTPT-PTPAPEQRTPTPA-PPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPR 443
            P   P+P+ PT   P+P + TP P+  P  +      PK   PV     P   P  PPR
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKE--PVRETATP---PPVPPR 415

Query: 444 NWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPS 487
              V    P  P      +         PV   P      PP  
Sbjct: 416 P--VAPPVPHTP-----ESAPKLTRAAIPVDEKPKYTPPAPPKE 452

Length = 585

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 60.5 bits (146), Expect = 1e-09
 Identities = 49/152 (32%), Positives = 60/152 (39%), Gaps = 19/152 (12%)

Query: 384 PSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSP--------PPPPTPKPLTPVPTPLPPV 435
           PS P   P P+TP P    +     P    PSP        PPPP  KPL+ +PT  PP 
Sbjct: 341 PSMPHIKPPPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPP- 399

Query: 436 NSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPP 495
            S +PPP          PQ     +   +P  P+L   Q  P    ST P S L   PP 
Sbjct: 400 -SAHPPPL------QLMPQSQPLQSVPAQP--PVLTQSQSLPPKA-STHPHSGLHSGPPQ 449

Query: 496 PPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
            P  ++P      P   P  S P    + PP 
Sbjct: 450 SPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPR 481

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 58.6 bits (142), Expect = 5e-09
 Identities = 29/156 (18%), Positives = 45/156 (28%), Gaps = 13/156 (8%)

Query: 382 SPPSAPSTPPKPSTPTPTPAPEQR---------TPTPAPPTPSPPPPPTPKPLTPVPTPL 432
           SP  +PS+P     P+   A             + + +  +            +  P+P 
Sbjct: 295 SPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPS 354

Query: 433 PPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQS 492
            P    +P     R R    P    P+A A  P++          +  +      P  + 
Sbjct: 355 RPPPPADPSSPRKRPRPSRAPSS--PAASAGRPTRRRARAAVAGRARRRDATGRFPAGRP 412

Query: 493 PPPPP--SVKYPPPVQSPPPPTPVQSPPPPVHSPPP 526
            P P              P  TP   P P    PPP
Sbjct: 413 RPSPLDAGAASGAFYARYPLLTPSGEPWPGSPPPPP 448

Length = 1352

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 58.8 bits (142), Expect = 6e-09
 Identities = 43/152 (28%), Positives = 53/152 (34%), Gaps = 17/152 (11%)

Query: 393  PSTPTPTPAPEQRTPTPAPPTPSP----PP----PPTPKPLTPVPTPLPPVNSPNPPPRN 444
            P  P      E R P  A   P P    PP    PP P  L P   P  PV  P  P   
Sbjct: 2475 PGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRML 2534

Query: 445  WRVR---------SHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPP 495
              +R         +  PP P  P+AP   P + + PP   P  S  +    +  P +PP 
Sbjct: 2535 TWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQ 2594

Query: 496  PPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
                + P   +  P      SP PP    P P
Sbjct: 2595 SARPRAPVDDRGDPRGPAPPSPLPPDTHAPDP 2626

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 57.7 bits (140), Expect = 1e-08
 Identities = 25/134 (18%), Positives = 32/134 (23%), Gaps = 14/134 (10%)

Query: 379 GGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSP 438
               PP+     P          P        P   +  P   P       +   P    
Sbjct: 678 PAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADD 737

Query: 439 NPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPS 498
             P          PP+P  P  PA  P++P  PP   P  +      P P P S      
Sbjct: 738 PVPL---------PPEPDDPPDPAGAPAQP--PPPPAPAPAAAPAAAPPPSPPSEEEEM- 785

Query: 499 VKYPPPVQSPPPPT 512
                   S     
Sbjct: 786 --AEDDAPSMDDED 797

Length = 824

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 57.4 bits (138), Expect = 1e-08
 Identities = 43/144 (29%), Positives = 50/144 (34%), Gaps = 6/144 (4%)

Query: 381 GSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNP 440
           G  P  PS     +      AP    P P  PTP  PP   P               P  
Sbjct: 670 GHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAA 729

Query: 441 PPRNWRVRSHTPPQPWRPSAPAPEPSKP--LLPPVQYPPSSVQSTPPPSPLPQSPPPPPS 498
            P   R      P   RP A AP  ++P    P    PP++    P P P PQ+PP P  
Sbjct: 730 APGRAR-PPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQ 788

Query: 499 VKYPPPVQSPPP---PTPVQSPPP 519
                P   PPP   PT +Q  P 
Sbjct: 789 RPRGAPTPQPPPQAGPTSMQLMPR 812

Length = 991

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 57.1 bits (138), Expect = 2e-08
 Identities = 38/136 (27%), Positives = 48/136 (35%), Gaps = 12/136 (8%)

Query: 381 GSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNP 440
            SP    S  P P  P+    P   TP PA P PSP P  +           PP  SP  
Sbjct: 98  ASPAREGS--PTPPGPSSPDPPP-PTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPA 154

Query: 441 PPRNWRVRSHTPPQPWRPSAPAPEPSKPL--LPPVQYPPSSVQSTPPPSPLPQSPPPPPS 498
              +       P      +A + + + PL         PSS  + PPPS  P +  P P 
Sbjct: 155 AGAS-------PAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPP 207

Query: 499 VKYPPPVQSPPPPTPV 514
            +  P   S   P P 
Sbjct: 208 RRSSPISASASSPAPA 223

Length = 1352

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 56.5 bits (136), Expect = 3e-08
 Identities = 42/168 (25%), Positives = 49/168 (29%), Gaps = 29/168 (17%)

Query: 382  SPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPP 441
            +PP     P  P  P P P P        P  P+  P    +P   VP P         P
Sbjct: 2913 APPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPW---LGALVP 2969

Query: 442  PRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQS-----------TPPPSPLP 490
             R    R   P     PS  AP  S P  P   +  S V S            PPP  L 
Sbjct: 2970 GRVAVPRFRVPQP--APSREAPASSTP--PLTGHSLSRVSSWASSLALHEETDPPPVSLK 3025

Query: 491  QSPPPPPSVKYPPPVQS-----------PPPPTPVQSPPPPVHSPPPP 527
            Q+  PP   +                     P P +   P  H P P 
Sbjct: 3026 QTLWPPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEPDPA 3073

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 56.0 bits (135), Expect = 3e-08
 Identities = 26/123 (21%), Positives = 33/123 (26%)

Query: 380 GGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPN 439
             + P+A    P  +     PA       PAP    PPP     P    P P  P  +P 
Sbjct: 460 AAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPA 519

Query: 440 PPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSV 499
                      T          AP P+    P        V +  PP       P     
Sbjct: 520 GWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDG 579

Query: 500 KYP 502
            +P
Sbjct: 580 DWP 582

Length = 700

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 55.3 bits (133), Expect = 3e-08
 Identities = 37/145 (25%), Positives = 45/145 (31%), Gaps = 7/145 (4%)

Query: 382 SPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPP 441
            P  AP +P           P  + P+  PP      P  P P        PP + P PP
Sbjct: 74  PPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTP--QQEPYYPPPSQPQPP 131

Query: 442 PRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPL--PQSPPPPPSV 499
           P          P P  P     +         Q PP   QS P  S L   +SP  P S 
Sbjct: 132 PAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQS- 190

Query: 500 KYPPPVQSPPPPTPVQSPPPPVHSP 524
              PP +  P    +Q P       
Sbjct: 191 --YPPNEPLPSSMAMQPPYSGAPPS 213

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 3/110 (2%)

Query: 214 TIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDA 273
           T G+  +  +   +    G +P  I  + ++  I LS N + G +P  +G +  L V D 
Sbjct: 414 TKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDL 473

Query: 274 SSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLP---NINNFT 320
           S NSF GS+P+S   L S+  L L+ N L+G V   +          NFT
Sbjct: 474 SYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFT 523

Length = 623

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 55.6 bits (134), Expect = 5e-08
 Identities = 29/146 (19%), Positives = 40/146 (27%), Gaps = 4/146 (2%)

Query: 382 SPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPP 441
               A +       P   P P   T     P       PT    T  P       SP PP
Sbjct: 53  VTVVAGAAACDRFEPPTGPPPGPGTE---APANESRSTPTWSLSTLAPASPAREGSPTPP 109

Query: 442 PRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKY 501
             +        P P  P          +L PV  P     ++PP +    +     +   
Sbjct: 110 GPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASS 169

Query: 502 PPP-VQSPPPPTPVQSPPPPVHSPPP 526
               +    P    ++P  P   PPP
Sbjct: 170 RQAALPLSSPEETARAPSSPPAEPPP 195

Length = 1352

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 54.2 bits (130), Expect = 6e-08
 Identities = 42/130 (32%), Positives = 49/130 (37%), Gaps = 8/130 (6%)

Query: 406 TPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEP 465
           T  P  P           PL  V   LPP  +P  P  + + +S  PP    PS   P+ 
Sbjct: 47  TKQPPAPEQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQ 106

Query: 466 S-----KPLLPPVQYPPSSVQSTPPP--SPLPQSPPPPPSVKYPPPVQSPPP-PTPVQSP 517
                 +P      Y P   Q  PPP   P  Q P PPP V      QSPP  P   Q+P
Sbjct: 107 VQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNP 166

Query: 518 PPPVHSPPPP 527
           PP   S P  
Sbjct: 167 PPQAQSAPQV 176

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 55.3 bits (134), Expect = 7e-08
 Identities = 19/91 (20%), Positives = 27/91 (29%), Gaps = 7/91 (7%)

Query: 379 GGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSP 438
           G GS  +  +     +     PA       PA P P+PP    P      P P     + 
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAP---AAPPKPAAAAAAA 93

Query: 439 NPPPRNWRVRSHTPPQPWRPSAPAPEPSKPL 469
             P       +   P     +A   +   PL
Sbjct: 94  AAPAAPPAAAAAAAP----AAAAVEDEVTPL 120

Length = 1228

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 27/106 (25%), Positives = 32/106 (30%), Gaps = 19/106 (17%)

Query: 416 PPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQY 475
           P P P P   T      P    P P           P    + +A A  P K  +     
Sbjct: 362 PVPAPQPAKPTA---AAPSPVRPTP----------APSTRPKAAAAANIPPKEPVRETAT 408

Query: 476 PPSSVQSTPPPSPL-PQSPPPPPSVKYPPPVQSPPPPTPVQSPPPP 520
           PP       PP P+ P  P  P S         P    P  +PP P
Sbjct: 409 PP-----PVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAP 449

Length = 585

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 22/91 (24%), Positives = 29/91 (31%), Gaps = 7/91 (7%)

Query: 364 PVVSNPVDCSKDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPK 423
           P  + P   +        +P + P      + P   P  E  TP P PP P  PP P   
Sbjct: 366 PQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTP 425

Query: 424 PLTP------VPTPLPPV-NSPNPPPRNWRV 447
              P      +P    P    P PP    + 
Sbjct: 426 ESAPKLTRAAIPVDEKPKYTPPAPPKEEEKA 456

Length = 585

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 26/149 (17%), Positives = 37/149 (24%), Gaps = 8/149 (5%)

Query: 381 GSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLP---PVNS 437
            +   A      P       A    T   APP    PP    +         P     N+
Sbjct: 400 TAVTGAAGAALAPKAAAAAAA----TRAEAPPAAPAPPATADRGDDAADGDAPVPAKANA 455

Query: 438 PNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPP 497
                     R   PP     ++ AP    P     +  P +   +            P 
Sbjct: 456 RASADSRCDERDAQPPADSGSAS-APASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPA 514

Query: 498 SVKYPPPVQSPPPPTPVQSPPPPVHSPPP 526
           +        +  PP P   PP P  + P 
Sbjct: 515 AASREDAPAAAAPPAPEARPPTPAAAAPA 543

Length = 830

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 30/142 (21%), Positives = 36/142 (25%), Gaps = 4/142 (2%)

Query: 381 GSPPSAPSTPPKPSTP-TPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPN 439
           G P   P    + S P  P P          P     PP    +   P   P  P     
Sbjct: 93  GEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQR 152

Query: 440 PPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSP-LPQSPPPPPS 498
           P P  W          W+       P  P   P  Y P   +   P     P+       
Sbjct: 153 PEPGAW--PRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRD 210

Query: 499 VKYPPPVQSPPPPTPVQSPPPP 520
             +P P    P       P PP
Sbjct: 211 YDHPRPDWDRPRRDRTDRPEPP 232

Length = 617

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 53.2 bits (127), Expect = 3e-07
 Identities = 44/165 (26%), Positives = 58/165 (35%), Gaps = 18/165 (10%)

Query: 379 GGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPV---PTPLPPV 435
           G  S    P     PS P PTP+ +   P  +P    P P P       +   P+  P  
Sbjct: 177 GPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQR 236

Query: 436 NSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPP 495
                PP   +  S   PQP  PS+  P+       P    P ++Q  P     P S PP
Sbjct: 237 LPSPHPPLQPQTASQQSPQPPAPSSRHPQS--SHHGPGPPMPHALQQGPVFLQHPSSNPP 294

Query: 496 PP---SVKYPPPVQSP----------PPPTPVQSPPPPVHSPPPP 527
            P   +    PP+  P          P  + +Q   PP   P PP
Sbjct: 295 QPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPP 339

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 52.9 bits (127), Expect = 3e-07
 Identities = 34/157 (21%), Positives = 38/157 (24%), Gaps = 20/157 (12%)

Query: 384 PSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLT------PVPTPLPPVNS 437
              P  P +   PT  PA       P P   + P               P   P     S
Sbjct: 128 DRPPGLPRQDQLPTARPAYPAYQQRPEPG--AWPRAADDYGWQQQRLGFPPRAPYASPAS 185

Query: 438 PNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLP------- 490
             P     R     P    RP             P    P     T  P P P       
Sbjct: 186 YAPEQERDR----EPYDAGRPEYDQRRRDYDHPRPDWDRPRR-DRTDRPEPPPGAGHVHR 240

Query: 491 QSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
             P PP     P     P  P P+ + P P   P  P
Sbjct: 241 GGPGPPERDDAPVVPIRPSAPGPLAAQPAPAPGPGEP 277

Length = 617

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 52.6 bits (127), Expect = 4e-07
 Identities = 20/103 (19%), Positives = 29/103 (28%), Gaps = 20/103 (19%)

Query: 387 PSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWR 446
           P +   P+      A     P  AP   +P  P    P    P                 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAA--------------- 82

Query: 447 VRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPL 489
                PP+P   +A A  P+ P        P++       +PL
Sbjct: 83  -----PPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPL 120

Length = 1228

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 52.4 bits (125), Expect = 5e-07
 Identities = 55/206 (26%), Positives = 69/206 (33%), Gaps = 37/206 (17%)

Query: 354 PSQKWATTCSPVVSNPVDCSKDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPT 413
           P Q       P           +       P    +P  P  P        + P P+   
Sbjct: 204 PPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRH 263

Query: 414 PSP----PPPPTPKPLTPVPTPLPPVNS--------------PNPPPRNWRVRSHTPPQ- 454
           P      P PP P  L   P  L   +S              P P P   +  SHTPP  
Sbjct: 264 PQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQ 323

Query: 455 ----PWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQS--- 507
               P +P    P P  P +P ++ PP+    TP P    QS   PP ++ P P      
Sbjct: 324 SALQPQQPPREQPLPPAPSMPHIKPPPT----TPIPQLPNQSHKHPPHLQGPSPFPQMPS 379

Query: 508 --PPPPT--PVQSPP---PPVHSPPP 526
             PPPP   P+ S P   PP   PPP
Sbjct: 380 NLPPPPALKPLSSLPTHHPPSAHPPP 405

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 52.1 bits (125), Expect = 6e-07
 Identities = 32/126 (25%), Positives = 39/126 (30%), Gaps = 11/126 (8%)

Query: 381 GSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNP 440
            S  ++ S+               R+P+P+ P P   P    K   P   P  P  S   
Sbjct: 325 SSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGR 384

Query: 441 PPR---------NWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQ 491
           P R           R R  T   P     P P P         +       TP   P P 
Sbjct: 385 PTRRRARAAVAGRARRRDATGRFP--AGRPRPSPLDAGAASGAFYARYPLLTPSGEPWPG 442

Query: 492 SPPPPP 497
           SPPPPP
Sbjct: 443 SPPPPP 448

Length = 1352

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 52.0 bits (124), Expect = 6e-07
 Identities = 38/144 (26%), Positives = 53/144 (36%), Gaps = 11/144 (7%)

Query: 384 PSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPV--PTP-LPPVNSPNP 440
           PS    PP   +  P  +  ++ P P  P P  P    P     +  PTP  PP     P
Sbjct: 602 PSQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTPHQPPQVEITP 661

Query: 441 PPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVK 500
               W    H P QP  P+          + P+Q+ P ++Q  PP +P P  PP  P  +
Sbjct: 662 YKPTWTQIGHIPYQP-SPTGANT------MLPIQWAPGTMQ-PPPRAPTPMRPPAAPPGR 713

Query: 501 YPPPVQSPPPPTPVQSPPPPVHSP 524
              P  +     P  + P     P
Sbjct: 714 AQRPAAATGRARPPAAAPGRARPP 737

Length = 991

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.4 bits (124), Expect = 9e-07
 Identities = 19/127 (14%), Positives = 31/127 (24%), Gaps = 25/127 (19%)

Query: 382 SPPSAPSTPPKPSTPTPTPAPEQ---RTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVN-- 436
           +P  AP+ P   +T     A +Q              P      +P+      L  V   
Sbjct: 406 APQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPA 465

Query: 437 ---SPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSP 493
                  P +            W+ + P     +P+  P                L    
Sbjct: 466 PSALEKAPAK-------KEAYRWKATNPVEVKKEPVATP----------KALKKALEHEK 508

Query: 494 PPPPSVK 500
            P  + K
Sbjct: 509 TPELAAK 515

Length = 647

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 51.4 bits (123), Expect = 9e-07
 Identities = 24/141 (17%), Positives = 31/141 (21%), Gaps = 6/141 (4%)

Query: 381 GSPPSAPSTPPKPSTPTPTPAPEQRT----PTPAPPTPSPPPPPTPKPLTPVPTPLPPVN 436
             P       P            Q+     P  AP        P  +          P  
Sbjct: 145 AYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEY 204

Query: 437 SPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPP 496
                  +        P+  R   P P P    +      P      P     P +P P 
Sbjct: 205 DQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGPL 264

Query: 497 PSVKYPPPVQSPPPPTPVQSP 517
                P P   P  PT   +P
Sbjct: 265 A--AQPAPAPGPGEPTARLNP 283

Length = 617

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.1 bits (123), Expect = 9e-07
 Identities = 44/201 (21%), Positives = 53/201 (26%), Gaps = 56/201 (27%)

Query: 382 SPPSAPSTPPKPSTPTPTPAP-EQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPP-----V 435
             PSAP T    +TP+P PA      P PA PT   P PP      P    L       +
Sbjct: 390 IQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLNLEELWQQIL 449

Query: 436 NSPNPPPR------------------------NW--RVRS-------------------- 449
                P                          NW   V+S                    
Sbjct: 450 AKLELPSTRMLLSQQAELVSLDSNRAVIAVSPNWLGMVQSRKPLLEQAFAKVLGRSIKLN 509

Query: 450 ---HTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQ 506
               +         P P P K   PP   PP    +   P P P  PPP  +        
Sbjct: 510 LESQSGSASNTAKTPPP-PQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPA 568

Query: 507 SPPPPTPVQSPPPPVHSPPPP 527
             P  +    P P   +P P 
Sbjct: 569 QIPADSSPPPPIPEEPTPSPT 589

Length = 620

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 46/196 (23%), Positives = 53/196 (27%), Gaps = 48/196 (24%)

Query: 380 GGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPT-----------PSPPPPPTPKPLTP- 427
           G     AP T    + P P P         APP             + P PP P P  P 
Sbjct: 262 GEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPDPPPPAPA 321

Query: 428 --------------VPTPLPPVNSPNPPPRNWRVR-SHTPPQPWR---------PSAPAP 463
                         V +PLP      P     R R + TPP               A  P
Sbjct: 322 GDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLP 381

Query: 464 EPSKPLLPPVQYP----------PSSVQSTPPPSPLPQSPPPPPSVKYPP--PVQSPPPP 511
              +        P                 P   P P   P P S   PP  P+ S  P 
Sbjct: 382 TRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPG 441

Query: 512 TPVQSPPPPVHSPPPP 527
           +     PPP   PP P
Sbjct: 442 SDDGPAPPPERQPPAP 457

Length = 3151

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 43/209 (20%), Positives = 57/209 (27%), Gaps = 47/209 (22%)

Query: 351 AQRPSQKWATTCSPVVSNPVDCSKDVCLGGGSPPSAPSTPPKPSTPTPTPA---PEQR-- 405
           A       A   S      V  ++           A + PP P    PTPA   P  R  
Sbjct: 488 AAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAG 547

Query: 406 --------------------------TPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPN 439
                                        PA    + P P  P+    VPTP     + +
Sbjct: 548 GAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGD 607

Query: 440 PPPRNWRVRSHTPPQPWRPSAPAPEPSKPL--LPPVQYPPSSVQSTPPPS-----PLPQS 492
            PP                +A +     P   +PP  Y P S             P+  S
Sbjct: 608 APP--------NGAARAEQAAESRGAPPPWEDIPPDDYVPLSADEGFGGPDDGFVPVFDS 659

Query: 493 PPPPPSVKYPPPVQSPPPPTPVQSPPPPV 521
            P    V  P P  +P PP   +  PP +
Sbjct: 660 GPDDVRVA-PKPADAPAPPVDTRPLPPAI 687

Length = 830

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 51.2 bits (122), Expect = 1e-06
 Identities = 34/133 (25%), Positives = 43/133 (32%), Gaps = 9/133 (6%)

Query: 384 PSAPSTPPKPSTPTPTPA--PEQRTPTPAPPTPSPPPPPTP---KPLTPVPTPL-PPVNS 437
           P     PP+  TP   PA  P +     A    + PP   P   +P    P    PP  +
Sbjct: 691 PGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAA 750

Query: 438 PNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPP 497
           P              P    P AP P+P  P  PP   P    +  P P P PQ+ P   
Sbjct: 751 PGRARPPAAAPGRARPPAAAPGAPTPQP-PPQAPPA--PQQRPRGAPTPQPPPQAGPTSM 807

Query: 498 SVKYPPPVQSPPP 510
            +          P
Sbjct: 808 QLMPRAAPGQQGP 820

Length = 991

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 37/151 (24%), Positives = 42/151 (27%), Gaps = 6/151 (3%)

Query: 382 SPPSAPSTPPKPSTPTPTP---APEQRTPTPA---PPTPSPPPPPTPKPLTPVPTPLPPV 435
            PP    + P+  TP   P    P Q  P PA         PPP  P+       P  P 
Sbjct: 102 LPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQ 161

Query: 436 NSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPP 495
              NPPP+       +   P                P         S  PPS     PP 
Sbjct: 162 YQQNPPPQAQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGAPPSQQFYGPPQ 221

Query: 496 PPSVKYPPPVQSPPPPTPVQSPPPPVHSPPP 526
           P    Y  P   P    P    PPP      
Sbjct: 222 PSPYMYGGPGGRPNSGFPSGQQPPPSQGQEG 252

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 29/92 (31%), Positives = 44/92 (47%)

Query: 101 VVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRL 160
            + G+ L+   + G+ P ++  L  L   +++ N   G IP SL +   +   D+S N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 161 VGSFPNVCLSWTSLRYLDLRYNNFEGEVPREL 192
            GS P      TSLR L+L  N+  G VP  L
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 26/110 (23%), Positives = 35/110 (31%), Gaps = 4/110 (3%)

Query: 412 PTPSPPPPPTPKPLTPV-PTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLL 470
             P PP P   +    V P  +  V  P  PP                +A + +P     
Sbjct: 40  AIPLPPKPQGDRDEPRVLPAVVQVVALPTQPPEGVAQEIQDAGDA---AAASVDPQPVAQ 96

Query: 471 PPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPP 520
           PPV+  P+ V          + P  PP+   P      P P PV  P   
Sbjct: 97  PPVESTPAGVPVAAQTPKPVKPPKQPPAGAVPAKPTPKPEPKPVAEPAAA 146

Length = 226

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 26/61 (42%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 384 PSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPR 443
           P  P  PP+P TP    +P    PTP PPT +P  PP P    P P   PP + P  PPR
Sbjct: 81  PLTPPAPPEPVTPPTAQSPAPAVPTP-PPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPPR 139

Query: 444 N 444
            
Sbjct: 140 A 140

Length = 141

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 25/115 (21%), Positives = 31/115 (26%), Gaps = 10/115 (8%)

Query: 410 APPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPL 469
           A     P     P    P   P P   +    P      S         SA  P  +   
Sbjct: 369 ASGGRGPKQHIKPVFTQPAAAPQPS-AAAAASPSP-SQSSAAAQPSAPQSATQPAGTP-- 424

Query: 470 LPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSP 524
            P V   P +     PPS  PQ+  P          +   P + V S  P    P
Sbjct: 425 -PTVSVDPPAAVPVNPPSTAPQAVRPAQF-----KEEKKIPVSKVSSLGPSTLRP 473

Length = 614

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 41/192 (21%), Positives = 53/192 (27%), Gaps = 31/192 (16%)

Query: 363 SPVVSNPVDCSKDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPT- 421
           SP    P               S+P +    S P P P         A  + S     + 
Sbjct: 188 SPPAEPPPSTPPAAASPRPPRRSSPISASASS-PAPAPGRSAADDAGASSSDSSSSESSG 246

Query: 422 ----PKPLTPVPTPLP---------PVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKP 468
               P+   P+P P P               P  R     S + P   R  +P+P PS P
Sbjct: 247 CGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSP---RERSPSPSPSSP 303

Query: 469 LLPPVQYPPSSVQ-------------STPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQ 515
              P    P +               S+   S    +  P PS    P    PPPP    
Sbjct: 304 GSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPS 363

Query: 516 SPPPPVHSPPPP 527
           SP         P
Sbjct: 364 SPRKRPRPSRAP 375

Length = 1352

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 7/144 (4%)

Query: 385 SAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRN 444
           +APS         P  A        APP  +   P       P     PP  +  PP + 
Sbjct: 209 AAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAA-APAKAAAPPAKAAAPPAKA 267

Query: 445 WRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSP---PPPPSVKY 501
               +     P + +AP   P+K   PP +   +  ++   P+    +P     PP+   
Sbjct: 268 AAPPAKAAAPPAKAAAP---PAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAA 324

Query: 502 PPPVQSPPPPTPVQSPPPPVHSPP 525
            PP ++  PP    +PP    + P
Sbjct: 325 APPAKAATPPAKAAAPPAKAAAAP 348

Length = 357

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 50.3 bits (120), Expect = 3e-06
 Identities = 27/85 (31%), Positives = 30/85 (35%), Gaps = 8/85 (9%)

Query: 379 GGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPS--------PPPPPTPKPLTPVPT 430
           G      A   P    TP PTP P    P PA P PS        P PPP  +P  P   
Sbjct: 401 GDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATE 460

Query: 431 PLPPVNSPNPPPRNWRVRSHTPPQP 455
           P P             +R   PP+P
Sbjct: 461 PAPDDPDDATRKALDALRERRPPEP 485

Length = 3151

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 6/100 (6%)

Query: 428 VPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPS 487
            P       +  PPP         P    RP+APA EP+  L+   +   +  +     +
Sbjct: 52  APPAAAAPAAAQPPPA------AAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARA 105

Query: 488 PLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
             P +P             +      +         P  P
Sbjct: 106 AAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVP 145

Length = 484

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 33/93 (35%), Positives = 38/93 (40%), Gaps = 10/93 (10%)

Query: 407 PTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSH---TPPQPWRPSAPAP 463
               P    PPPP +   L P  + L P  S  P  R  RV  +     P P +PSAP  
Sbjct: 179 GGNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPA 238

Query: 464 EPSKPLLPPV-QYPPSSVQSTPPPSPLPQSPPP 495
               P +PPV QY        PPP P PQ   P
Sbjct: 239 SIPAPPIPPVIQYVA------PPPVPPPQPIIP 265

Length = 582

>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional

 Score = 48.3 bits (114), Expect = 4e-06
 Identities = 40/122 (32%), Positives = 50/122 (40%), Gaps = 7/122 (5%)

Query: 381 GSPPSAPSTP-PKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPN 439
           G  P APS     P+   P  AP    P    P P+P  PP   P  P P   P    P 
Sbjct: 78  GQSPLAPSPACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPA 137

Query: 440 PP-PRNWRVRSHTPPQPWRPSAPAPEPS--KPLLPPVQYPPSS---VQSTPPPSPLPQSP 493
           P  P + R     PP P    APA +P      LPP  YP +S   +++ P  SP+ +  
Sbjct: 138 PACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAPAASPVLEPR 197

Query: 494 PP 495
            P
Sbjct: 198 IP 199

Length = 280

>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 28/124 (22%), Positives = 35/124 (28%), Gaps = 23/124 (18%)

Query: 405 RTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQP--WRPSAPA 462
           +      P  SP      +P         P     P       +     QP  W   +  
Sbjct: 379 QPRMRQLPMGSPMGGAMGQP---------PYYGQGP-------QQQFNGQPLGWPRMSMM 422

Query: 463 PEPSKPLLP--PVQYPPSSVQSTPPPS--PLPQSPPPPPSVKYPPPVQSPPPPTPVQSPP 518
           P P  P  P  P    P +    P  +     Q PP  P V YPP  QS P    +  P 
Sbjct: 423 PTPMGPGGPLRPNGLAPMNAVRAPSRNAQNAAQKPPMQP-VMYPPNYQSLPLSQDLPQPQ 481

Query: 519 PPVH 522
               
Sbjct: 482 STAS 485

These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 49.4 bits (118), Expect = 5e-06
 Identities = 28/155 (18%), Positives = 39/155 (25%), Gaps = 13/155 (8%)

Query: 378 LGGGSPPSAPSTPPKPSTPTPTP--APEQRTPTPAPPTPSP--PPPPTPKPLTPVPTPLP 433
                     S P   +             TP     +  P  PP    +P     +   
Sbjct: 795 AFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPPGAAARPPPARSSESS 854

Query: 434 PVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSP 493
                    R         P+P  P A     + P               P  +P P+  
Sbjct: 855 KSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAP--------PAGAPAPRPR 906

Query: 494 PPPPSVKYPPPVQSPPPPTPVQSPPP-PVHSPPPP 527
           P P     P P   P P    +  PP  +H+P P 
Sbjct: 907 PAPRVKLGPMPPGGPDPRGGFRRVPPGDLHTPAPS 941

Length = 1352

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.1 bits (117), Expect = 5e-06
 Identities = 29/208 (13%), Positives = 42/208 (20%), Gaps = 46/208 (22%)

Query: 364 PVVSNPVDCSKDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAP-----PTPSPPP 418
           P    P   +             P+     ++           P         P    PP
Sbjct: 427 PAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPP 486

Query: 419 P----PTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPS-------- 466
                P P+   P       V     P    R  +     P  P A  P P+        
Sbjct: 487 DAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARA 546

Query: 467 -----------------------------KPLLPPVQYPPSSVQSTPPPSPLPQSPPPPP 497
                                        KP   P   P  +        P P++     
Sbjct: 547 GGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATG 606

Query: 498 SVKYPPPVQSPPPPTPVQSPPPPVHSPP 525
                   ++        +PPP    PP
Sbjct: 607 DAPPNGAARAEQAAESRGAPPPWEDIPP 634

Length = 830

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 49.1 bits (117), Expect = 5e-06
 Identities = 26/128 (20%), Positives = 33/128 (25%), Gaps = 12/128 (9%)

Query: 402 PEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAP 461
              R      P+   P PP P       T  P    P P  R +      P    RP   
Sbjct: 80  RPIRIAITVDPSAGEPAPPPP---HARRTSEP--ELPRPGRRPYEGYGG-PRADDRPPGL 133

Query: 462 APEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPP--PSVKYPPPVQSPPPPTPVQSPPP 519
             +   P   P  YP    +  P   P            + +PP     P  +P    P 
Sbjct: 134 PRQDQLPTARPA-YPAYQQRPEPGAWPRAADDYGWQQQRLGFPPR---APYASPASYAPE 189

Query: 520 PVHSPPPP 527
                 P 
Sbjct: 190 QERDREPY 197

Length = 617

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 48.9 bits (117), Expect = 5e-06
 Identities = 13/57 (22%), Positives = 19/57 (33%)

Query: 456 WRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPT 512
           W  +A  P  + P    +     S   T  P+    +P PPP+    PP        
Sbjct: 265 WADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGR 321

Length = 656

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 49.0 bits (117), Expect = 6e-06
 Identities = 35/173 (20%), Positives = 53/173 (30%), Gaps = 15/173 (8%)

Query: 364 PVVSNPVDCSKDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTP--------- 414
                P            +  S  ++  + + P  +P    R P+  P  P         
Sbjct: 143 SPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAA 202

Query: 415 SPPPPPTPKPL---TPVPTPLPPVNSPNPPPRNWRVRSHTPPQ--PWRPSAPAPEPSKPL 469
           SP PP    P+      P P P  ++ +    +    S +      W P    P P    
Sbjct: 203 SPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAP 262

Query: 470 LP-PVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPV 521
           +  P +   +S  + P   P P S    P  + P P  S P   P  S P   
Sbjct: 263 ITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRAS 315

Length = 1352

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 6e-06
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 138 GIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM-K 196
           G IP  +S  + +   ++S N + G+ P    S TSL  LDL YN+F G +P  L ++  
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 197 LDAIFLNNNRFSSWIPETIG 216
           L  + LN N  S  +P  +G
Sbjct: 492 LRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.8 bits (117), Expect = 6e-06
 Identities = 24/85 (28%), Positives = 30/85 (35%), Gaps = 8/85 (9%)

Query: 379 GGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPK----PLTPVPTPLPP 434
           G  S  +    PP+ S P P P P    PT   P P+PPPPP          P   P   
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574

Query: 435 VNSPNPPPRNWRVRSHTPPQPWRPS 459
              P  P       + +P +   P 
Sbjct: 575 SPPPPIPEEP----TPSPTKDSSPE 595

Length = 620

>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional

 Score = 48.4 bits (115), Expect = 7e-06
 Identities = 26/175 (14%), Positives = 37/175 (21%), Gaps = 42/175 (24%)

Query: 394 STPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLP-------------------P 434
           +            P P  PT    P   P  L+                          P
Sbjct: 58  ARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQP 117

Query: 435 VNSPNPPPRNWRVRSHTPPQP------------WRPSAPAPEPSKP--------LLPPVQ 474
           V+ P   P    VR+ + P P              P       + P           PV 
Sbjct: 118 VSVPRQAPAAAPVRAASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPVP 177

Query: 475 YPPSSVQSTPPPSPLPQSPPPPPSVKYP---PPVQSPPPPTPVQSPPPPVHSPPP 526
             P        P+P+P       +          Q       +    P +  P  
Sbjct: 178 RAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGFDLDDALPQILPPAA 232

Length = 559

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 48.5 bits (115), Expect = 8e-06
 Identities = 32/152 (21%), Positives = 43/152 (28%), Gaps = 16/152 (10%)

Query: 382 SPPSAPSTPPKPSTPT--PTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPN 439
            P   P   P P  P   P  AP    P       +     T  P             P 
Sbjct: 414 QPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAP-QSTYQTEQTYQQPA 472

Query: 440 PPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQS------------TPPPS 487
                ++       QP     P  E +KP  PP+ Y     +              P P 
Sbjct: 473 AQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPE 532

Query: 488 PLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPP 519
           P+ +  P   S+K  P V + PP     +  P
Sbjct: 533 PVKEPEPIKSSLK-APSVAAVPPVEAAAAVSP 563

Length = 1355

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.4 bits (116), Expect = 8e-06
 Identities = 19/61 (31%), Positives = 25/61 (40%)

Query: 384 PSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPR 443
           P+   +PP        P  +Q   TP+PP     PP         P+P PP N+ N PP 
Sbjct: 379 PAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPS 438

Query: 444 N 444
            
Sbjct: 439 L 439

Length = 620

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 48.5 bits (115), Expect = 9e-06
 Identities = 39/148 (26%), Positives = 49/148 (33%), Gaps = 13/148 (8%)

Query: 384 PSAP-STPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPP 442
           P  P  TP       P      +     P  P  P P   +P  PV  P P    P  P 
Sbjct: 740 PHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVA-PQPQYQQPQQPV 798

Query: 443 RNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKY- 501
                    P QP  P     +P +P+ P  QY     Q   P +P PQ     P +   
Sbjct: 799 APQPQYQQ-PQQPVAPQPQYQQPQQPVAPQPQYQ----QPQQPVAPQPQDTLLHPLLMRN 853

Query: 502 --PPPVQSPPPPTP---VQSPPPPVHSP 524
               P+  P  P P   + +PPP    P
Sbjct: 854 GDSRPLHKPTTPLPSLDLLTPPPSEVEP 881

Length = 1355

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.9 bits (115), Expect = 1e-05
 Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 9/71 (12%)

Query: 457 RPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQS 516
            P+AP PEP    +PP    P++            +PP        P V  PP   P Q+
Sbjct: 360 HPAAPLPEPE---VPPQSAAPAASAQATAAPTAAVAPPQ------APAVPPPPASAPQQA 410

Query: 517 PPPPVHSPPPP 527
           P  P+      
Sbjct: 411 PAVPLPETTSQ 421

Length = 647

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 35/162 (21%), Positives = 46/162 (28%), Gaps = 10/162 (6%)

Query: 359 ATTCSPVVSNPVDCSKDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPP 418
           A++     S    C          P  AP T P               P PA    S P 
Sbjct: 234 ASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASS-SSSPR 292

Query: 419 PPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPS 478
             +P P    P       S   P       S +  +    S+ +          V   PS
Sbjct: 293 ERSPSPSPSSP------GSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPS 346

Query: 479 SVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPP 520
             +S  P  P P + P  P  +  P   S  P +P  S   P
Sbjct: 347 PSRSPSPSRPPPPADPSSPRKRPRP---SRAPSSPAASAGRP 385

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 44/210 (20%), Positives = 60/210 (28%), Gaps = 49/210 (23%)

Query: 359 ATTCSPVVSNPVDCSKDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPP 418
               S   + P+   ++      SPP+ P  PP       +P P +R+   +    SP P
Sbjct: 165 DAASSRQAALPLSSPEETARAPSSPPAEP--PPSTPPAAASPRPPRRSSPISASASSPAP 222

Query: 419 PPTPKP-------------------------LTPVPTPLP---------PVNSPNPPPRN 444
            P                               P+P P P               P  R 
Sbjct: 223 APGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRP 282

Query: 445 WRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPP------SSVQSTPPPSPLPQSPPP-PP 497
               S + P   R  +P+P PS P   P    P      SS + +   S    S      
Sbjct: 283 GPASSSSSP---RERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGA 339

Query: 498 SVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
           +V   P     P P     PPPP     P 
Sbjct: 340 AVSPGPSPSRSPSP---SRPPPPADPSSPR 366

Length = 1352

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 24/94 (25%), Positives = 29/94 (30%), Gaps = 1/94 (1%)

Query: 435 VNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPL-PQSP 493
           V+  N  P N +      P P     P    ++P  P  Q P + V     P P  P   
Sbjct: 68  VHRVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQ 127

Query: 494 PPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
           P       P P Q    P   Q  P P      P
Sbjct: 128 PVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAP 161

Length = 333

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 47.8 bits (113), Expect = 1e-05
 Identities = 31/116 (26%), Positives = 38/116 (32%), Gaps = 4/116 (3%)

Query: 382 SPPSAPSTPPKPSTPTPTPA-PEQRTPTPA-PPTPSPPPPPTPKPLTPVPTPLPPVNSPN 439
            PP+AP    +        A P    P  A PP  +P     P        P        
Sbjct: 705 RPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRA 764

Query: 440 PPPRNWRVRSHTPPQPWRPSAPAPEP--SKPLLPPVQYPPSSVQSTPPPSPLPQSP 493
            PP          P P  P AP   P  +    PP Q  P+S+Q  P  +P  Q P
Sbjct: 765 RPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGP 820

Length = 991

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 27/118 (22%), Positives = 33/118 (27%), Gaps = 13/118 (11%)

Query: 381 GSPPSAPSTPPKPSTPTPTPAPEQRT---PTPAPPTPSPPP-PPTPKPLTPVPTPLPPVN 436
            S    P    KP    P  AP+       +P+P   S    P  P+  T      P V+
Sbjct: 369 ASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVS 428

Query: 437 SPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPP 494
              P            P    P A  P   K        P S V S  P +  P    
Sbjct: 429 VDPPAA------VPVNPPSTAPQAVRPAQFKEEKKI---PVSKVSSLGPSTLRPIQEK 477

Length = 614

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 19/111 (17%), Positives = 26/111 (23%), Gaps = 17/111 (15%)

Query: 410 APPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPL 469
           APP  + P    P P    P     V+ P  P           P PW     A   +   
Sbjct: 52  APPAAAAPAAAQP-PPAAAP---AAVSRPAAPAAE--------PAPWL-VEHAKRLTAQR 98

Query: 470 LPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPP 520
              V        +   P     + P   +       +          P  P
Sbjct: 99  EQLVARA----AAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVP 145

Length = 484

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 377 CLGGGSPPSAPSTP-PKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPV 435
            L      + P+T  P PS  T T   +  T  PA    +P PPP P    P P      
Sbjct: 262 FLTWADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGR 321

Query: 436 NSP 438
            S 
Sbjct: 322 GSA 324

Length = 656

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 27/108 (25%), Positives = 37/108 (34%), Gaps = 2/108 (1%)

Query: 383 PPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLP-PVNSPNPP 441
                  P  P      P   +  P P PP P   P P  KP  P P P P P   P   
Sbjct: 53  TEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVK 112

Query: 442 PRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPL 489
           P+    +  +      P+AP  +P++P         ++  S    S L
Sbjct: 113 PQPKPKKPPSKTAAKAPAAP-NQPARPPSAASASGAATGPSASYLSGL 159

Length = 244

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 33/120 (27%), Positives = 43/120 (35%), Gaps = 15/120 (12%)

Query: 382 SPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPP 441
            PPS  +  P P+ P P P P            + PPPP   P  P P P+ P   P P 
Sbjct: 46  PPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPPPPA 105

Query: 442 PRNWRVR------SHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPP 495
           P   R+       S+  P  W  S             + Y  + +  T    P+P  PPP
Sbjct: 106 PEPGRIDNAVGGFSYVVPAGWVESDAT---------HLDYGSALLSKTTGEPPMPGQPPP 156

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 33/147 (22%), Positives = 43/147 (29%), Gaps = 25/147 (17%)

Query: 391 PKPSTPTPTPAPEQRTPTPAPPT------------PSPPPPPTPKPLTP-VPTPLPPVNS 437
           P+P    P   P++R PT  PP+                 P   +       TP      
Sbjct: 341 PRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPG 400

Query: 438 PNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLP-PVQYPPSSVQSTPPPSPLPQSPPPP 496
            +   R       + P P     PA  P  P  P P   P S     PPP   P +P   
Sbjct: 401 GDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATE 460

Query: 497 PSVKYPPPV-----------QSPPPPT 512
           P+   P              + P PP 
Sbjct: 461 PAPDDPDDATRKALDALRERRPPEPPG 487

Length = 3151

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.2 bits (113), Expect = 2e-05
 Identities = 20/106 (18%), Positives = 27/106 (25%), Gaps = 15/106 (14%)

Query: 423 KPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQS 482
            P  P+P P  P  S  P          +      P+A          P     P    S
Sbjct: 360 HPAAPLPEPEVPPQSAAPAA--------SAQATAAPTAAVAP------PQAPAVPPPPAS 405

Query: 483 TPPPSPLPQSPPPPPSV-KYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
            P  +P    P     +      +Q     T  +   P   S   P
Sbjct: 406 APQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARP 451

Length = 647

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 34/167 (20%), Positives = 47/167 (28%), Gaps = 19/167 (11%)

Query: 379 GGGSPPSAPSTPPKPSTPTPTPAP----EQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPP 434
            G S P  P   P P++P P+PAP      R      P P+  PP        V +    
Sbjct: 109 PGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAAS 168

Query: 435 --------------VNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSV 480
                           +P+ PP      +       RP   +   S     P   P  S 
Sbjct: 169 SRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSA 228

Query: 481 QSTPPPSPLPQSPPPPPSVKYPPPVQSP-PPPTPVQSPPPPVHSPPP 526
                 S    S        + P  + P P P P+  P     +   
Sbjct: 229 ADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGW 275

Length = 1352

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 47.6 bits (114), Expect = 2e-05
 Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 6/92 (6%)

Query: 438 PNPPPRNWR--VRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPP 495
           PN    +WR     + P     P+A A   +     P   P +   + P P+P   + P 
Sbjct: 22  PNSVDPSWREFFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPA 81

Query: 496 PPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
            P    P P  +        +PP    +  P 
Sbjct: 82  AP----PKPAAAAAAAAAPAAPPAAAAAAAPA 109

Length = 1228

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 20/70 (28%), Positives = 25/70 (35%)

Query: 458 PSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSP 517
            +A AP    P   P   P     S P       +P PPP+   PP      P  P  +P
Sbjct: 369 ANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTP 428

Query: 518 PPPVHSPPPP 527
           P    + PP 
Sbjct: 429 PANAANAPPS 438

Length = 620

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 30/87 (34%), Positives = 35/87 (40%), Gaps = 13/87 (14%)

Query: 391 PKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSH 450
           P  +   P P P   +   A P P+ PPPP P    P   P P  + PN  P        
Sbjct: 34  PATANADPAPPPPPPSTAAAAPAPAAPPPPPP----PAAPPAPQPDDPNAAP-------- 81

Query: 451 TPPQPWRPSAPAPEPSKPLLPPVQYPP 477
            PP P  P+AP P P  P  PP   P 
Sbjct: 82  -PPPPADPNAPPPPPVDPNAPPPPAPE 107

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 25/88 (28%), Positives = 31/88 (35%), Gaps = 14/88 (15%)

Query: 449 SHTPPQPWRPSAPAPEPSKPLL---------PPVQYPPSSVQSTPPPSPLPQSPPPPPSV 499
           ++ PP P R  APAP   K             P      +VQ+ P   P  Q+P   P  
Sbjct: 170 TYIPPNPPR-EAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQN-PAQQPTVQNPAQQPQ- 226

Query: 500 KYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
               P Q P  P    +P  P   PP  
Sbjct: 227 --QQPQQQPVQPAQQPTPQNPAQQPPQT 252

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 29/102 (28%), Positives = 35/102 (34%), Gaps = 22/102 (21%)

Query: 425 LTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTP 484
           + P P   P V    P P          PQP R   PA +P  P   P          +P
Sbjct: 380 VAPSPAGSPDVKKKAPEP--------DLPQPDRHPGPA-KPEAPGARPA------ELPSP 424

Query: 485 PPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPP 526
             +P P+  PP            P PP+P  S P  V S  P
Sbjct: 425 ASAPTPEQQPPVA----RSA---PLPPSPQASAPRNVASGKP 459

Length = 620

>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional

 Score = 47.4 bits (112), Expect = 2e-05
 Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 385 SAPSTPPKPSTPTPTPAPEQRTPTPAP-PTPSPPPPPTPKPL 425
           S   TPP P  P PTP P+   PTP P PTP P P P  +P+
Sbjct: 915 SQEVTPPSPPDPDPTPDPD---PTPDPDPTPDPEPTPAYQPV 953

Length = 1250

>gnl|CDD|223066 PHA03379, PHA03379, EBNA-3A; Provisional

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 44/161 (27%), Positives = 55/161 (34%), Gaps = 31/161 (19%)

Query: 383 PPSAPSTPPKPSTPTPTPAPEQ--RTPTPAPPTPSPPPPPT----PKPL--------TPV 428
                   P+P    P P   Q   T T       P PPP     P PL         PV
Sbjct: 408 ASEPTYGTPRPPVEKPRPEVPQSLETATSHGSAQVPEPPPVHDLEPGPLHDQHSMAPCPV 467

Query: 429 ----PTPLPPVNSPNPPPRNWRVRSHTPPQPWRPS-APAPEPSKPLLPPVQYPPSSVQST 483
               P PL  +   +  P           Q  RP+ AP P P+ P++ P +   S V   
Sbjct: 468 AQLPPGPLQDLEPGDQLP--------GVVQDGRPACAPVPAPAGPIVRPWEASLSQVPGV 519

Query: 484 PP----PSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPP 520
                 P P+P  P P P+V    PV   PP   +Q P   
Sbjct: 520 AFAPVMPQPMPVEPVPVPTVALERPVCPAPPLIAMQGPGET 560

Length = 935

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 23/101 (22%), Positives = 32/101 (31%), Gaps = 24/101 (23%)

Query: 424 PLTPVPTPLPPVN-----SPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPS 478
           P  PV   L  +      +P PP   W       P P  P+AP P  +    PPV     
Sbjct: 363 PGAPVSELLDRLEALERGAPAPPSAAWG-----APTPAAPAAPPPAAA----PPVPPAAP 413

Query: 479 SVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPP 519
           +  +   P+P P  P              PP  +   +   
Sbjct: 414 ARPAAARPAPAPAPPAAAA----------PPARSADPAAAA 444

Length = 576

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 25/145 (17%), Positives = 32/145 (22%), Gaps = 5/145 (3%)

Query: 383 PPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPP 442
           P       P P    P P P+          P+        P        P   +    P
Sbjct: 48  PWDPSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGP 107

Query: 443 RNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYP 502
               +   T P    P       ++         P           L Q    P S + P
Sbjct: 108 AGPTI--QTEPGQLYPVQVPVMVTQNPANSPLDQP---AQQRALQQLQQRYGAPASGQLP 162

Query: 503 PPVQSPPPPTPVQSPPPPVHSPPPP 527
              QS       Q    P    PP 
Sbjct: 163 SQQQSAQKNDESQLQQQPNGETPPQ 187

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 17/68 (25%), Positives = 21/68 (30%)

Query: 400 PAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPS 459
           PAP   +P  AP  P P     P      P    P        +  R R   P   W+  
Sbjct: 17  PAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASLWKLE 76

Query: 460 APAPEPSK 467
               EP +
Sbjct: 77  DFVVEPQE 84

Length = 475

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 23/129 (17%), Positives = 34/129 (26%), Gaps = 24/129 (18%)

Query: 402 PEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAP 461
           P Q      P T +  P   P P    P    P  +  P           P      +A 
Sbjct: 365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAA---------PAAAPAAAAA 415

Query: 462 APEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPP-PTPVQSP--P 518
           A               ++  +   P+P   +     S + P    +P P P    +    
Sbjct: 416 AR------------AVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAAR 463

Query: 519 PPVHSPPPP 527
           P    P P 
Sbjct: 464 PAAAGPRPV 472

Length = 700

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 31/155 (20%), Positives = 42/155 (27%), Gaps = 3/155 (1%)

Query: 374 KDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLP 433
           + V   G  P ++P           + A   R       +P         P    P   P
Sbjct: 139 RPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTP 198

Query: 434 PVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSP 493
           P  +   PPR     S +   P    AP    +           SS  S     P  + P
Sbjct: 199 PAAASPRPPRRSSPISASASSP--APAPGRSAADDAGASSSDSSSSESSGCGWGPENECP 256

Query: 494 -PPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
            P P  +  P  +          S P P  S   P
Sbjct: 257 LPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSP 291

Length = 1352

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 46.6 bits (110), Expect = 3e-05
 Identities = 30/103 (29%), Positives = 38/103 (36%), Gaps = 2/103 (1%)

Query: 424 PLTPVPTP-LPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQS 482
           P  P+ TP + PV  P  P    + +   P QP  P     +P +P+ P  QY       
Sbjct: 740 PHEPLFTPIVEPVQQPQQPVAP-QQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPV 798

Query: 483 TPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPP 525
            P P       P  P  +Y  P Q   P    Q P  PV   P
Sbjct: 799 APQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQP 841

Length = 1355

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 46.4 bits (111), Expect = 3e-05
 Identities = 16/75 (21%), Positives = 24/75 (32%)

Query: 451 TPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPP 510
           T       +A A   S P   P    P++    PP +  P +PP P +        + PP
Sbjct: 41  TAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPP 100

Query: 511 PTPVQSPPPPVHSPP 525
                + P       
Sbjct: 101 AAAAAAAPAAAAVED 115

Length = 1228

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 17/79 (21%), Positives = 25/79 (31%)

Query: 394 STPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPP 453
            + + +   +   P    P P  P PP P+P    P P PP   P     +    +  P 
Sbjct: 513 QSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPA 572

Query: 454 QPWRPSAPAPEPSKPLLPP 472
               P     EP+      
Sbjct: 573 DSSPPPPIPEEPTPSPTKD 591

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 23/70 (32%), Positives = 26/70 (37%)

Query: 451 TPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPP 510
                     PAP PS P  P     P + Q+   PSP P    PP  V   P   SP P
Sbjct: 369 ANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTP 428

Query: 511 PTPVQSPPPP 520
           P    + PP 
Sbjct: 429 PANAANAPPS 438

Length = 620

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 37/136 (27%), Positives = 46/136 (33%), Gaps = 21/136 (15%)

Query: 386 APSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLP-PVNSPNPPPRN 444
           A   PP+   P P P  E        P P P P P P    PV  P P P   P P P+ 
Sbjct: 56  ADLEPPQAVQPPPEPVVE--------PEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPK- 106

Query: 445 WRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPP 504
                   P+P +     P+    + P    P S  ++T P  P   S     + K    
Sbjct: 107 --------PKPVKKVEEQPKR--EVKPVEPRPASPFENTAPARPTS-STATAAASKPVTS 155

Query: 505 VQSPPPPTPVQSPPPP 520
           V S P       P  P
Sbjct: 156 VSSGPRALSRNQPQYP 171

Length = 246

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 34/115 (29%), Positives = 39/115 (33%), Gaps = 6/115 (5%)

Query: 383 PPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKP-LTPVPTPLPPVNSPNPP 441
           P +    P     P P P P    P P    P   P P PKP   P P P P       P
Sbjct: 61  PQAVQPPPEPVVEPEPEPEPI---PEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQP 117

Query: 442 PRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPP--SPLPQSPP 494
            R  +     P  P+  +APA   S         P +SV S P       PQ P 
Sbjct: 118 KREVKPVEPRPASPFENTAPARPTSSTATAAASKPVTSVSSGPRALSRNQPQYPA 172

Length = 246

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.1 bits (110), Expect = 4e-05
 Identities = 26/91 (28%), Positives = 33/91 (36%), Gaps = 10/91 (10%)

Query: 404 QRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAP 463
             + +    TP PP    P P    P P P   +P P P         PP P    A + 
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTP--------PPPPPTATQASSN 565

Query: 464 EPSKPLLPPVQYPPSSVQSTPPPSPLPQSPP 494
            P++   P    PP  +   P PSP   S P
Sbjct: 566 APAQI--PADSSPPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional

 Score = 45.8 bits (108), Expect = 4e-05
 Identities = 32/189 (16%), Positives = 41/189 (21%), Gaps = 40/189 (21%)

Query: 374 KDVCLGGGSPPSAPSTPPKPSTPTPTPAPE---------QRTPTPA----------PPTP 414
            D      +P  AP  P KP+ P   P            QR  + A           P  
Sbjct: 60  SDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQPVS 119

Query: 415 SPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPS---------APAPEP 465
            P   P   P+     P P   +                    P          AP P  
Sbjct: 120 VPRQAPAAAPVRAASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPVPRA 179

Query: 466 SKPLLPPVQYPPSSVQSTPPPSPLP-------QSPPPPPSVKYPPPVQSPPPPTPVQSPP 518
                      P    +    +          Q       +    P   PP   P     
Sbjct: 180 PVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGFDLDDALPQILPPAALP----- 234

Query: 519 PPVHSPPPP 527
           P V +P  P
Sbjct: 235 PIVVAPAAP 243

Length = 559

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 15/59 (25%), Positives = 18/59 (30%)

Query: 379 GGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNS 437
           GGG  P AP+    P      PA        A    +      P      P P   +NS
Sbjct: 403 GGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAAAPQPAVRLNS 461

Length = 598

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 46.1 bits (109), Expect = 5e-05
 Identities = 35/133 (26%), Positives = 41/133 (30%), Gaps = 11/133 (8%)

Query: 369 PVDCSKDVCLGGGSPPSAP-STPPKPSTP---TPTPAPEQRTPTPAPPTPSPPPPPTPKP 424
           P    +D+  G   P  A   T  + S     TP            P  P P   PTP P
Sbjct: 361 PPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAP 420

Query: 425 LTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTP 484
            TPVP   PP     P P         P  P     P  +P  P   P    P       
Sbjct: 421 -TPVPASAPP-PPATPLPSAEPGSDDGPAPP-----PERQPPAPATEPAPDDPDDATRKA 473

Query: 485 PPSPLPQSPPPPP 497
             +   + PP PP
Sbjct: 474 LDALRERRPPEPP 486

Length = 3151

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 45.8 bits (108), Expect = 5e-05
 Identities = 40/146 (27%), Positives = 48/146 (32%), Gaps = 22/146 (15%)

Query: 382 SPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPP 441
           S PS PS P    + + + A +Q      PP+   PP     P  P PTP      P   
Sbjct: 150 SSPSIPS-PQDNESDSDSSAQQQLLQPQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGS 208

Query: 442 PRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKY 501
           P                       ++P   P Q  P S+ S P   P     P PP    
Sbjct: 209 P---------------------IAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQ 247

Query: 502 PPPVQSPPPPTPVQSPPPPVHSPPPP 527
               QSP PP P    P   H  P P
Sbjct: 248 TASQQSPQPPAPSSRHPQSSHHGPGP 273

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.7 bits (109), Expect = 5e-05
 Identities = 25/88 (28%), Positives = 30/88 (34%), Gaps = 8/88 (9%)

Query: 384 PSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPR 443
            SA +T   P  P  +P P   TP    PT + PPP  P P            +  P   
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574

Query: 444 NWRVRSHTPPQPWRPSAPAPEPSKPLLP 471
                    P P  P  P P P+K   P
Sbjct: 575 --------SPPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 22/113 (19%), Positives = 30/113 (26%), Gaps = 5/113 (4%)

Query: 354 PSQKWATTCSPVVSNPVDCSKDVCLGGGSP-PSAPSTPPKPSTPTPTPAPEQRTPTPAPP 412
             +       PV + P    +       SP PS  S   +P    P  A +     P   
Sbjct: 371 GGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQP--SAPQSATQPAGTPPTVS 428

Query: 413 TPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPP--QPWRPSAPAP 463
              P   P   P T      P            +V S  P   +P +  A   
Sbjct: 429 VDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQA 481

Length = 614

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 23/149 (15%), Positives = 35/149 (23%), Gaps = 18/149 (12%)

Query: 379 GGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSP 438
              +P +    P    +   +     ++   A   P   P   P P              
Sbjct: 78  NQNAPGAPSVGPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPSL------------ 125

Query: 439 NPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPS 498
                 W       PQP +     P+P  P    +       Q            PP   
Sbjct: 126 ------WGTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQV 179

Query: 499 VKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
           +    P +    P       PP +  PP 
Sbjct: 180 LPQGMPPRQAAFPQQGPPEQPPGYPQPPQ 208

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 45.4 bits (107), Expect = 6e-05
 Identities = 35/125 (28%), Positives = 45/125 (36%), Gaps = 11/125 (8%)

Query: 384 PSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPV------PTPLPPVNS 437
            S P+ PP  +     P      P     +  P  P    P T        P P  P ++
Sbjct: 416 QSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTST 475

Query: 438 PNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQY---PPSSVQSTPPPSPLPQSPP 494
           P  PPR        PP    PS+       P LPP+Q    P    +    P P P+SP 
Sbjct: 476 PAAPPRA--SSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESPPPPPRSPS 533

Query: 495 PPPSV 499
           P P+V
Sbjct: 534 PEPTV 538

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 45.7 bits (109), Expect = 6e-05
 Identities = 11/79 (13%), Positives = 18/79 (22%)

Query: 439 NPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPS 498
            P        +         +  A   +K    P   PP++     PP P   +      
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 499 VKYPPPVQSPPPPTPVQSP 517
              P    +  P       
Sbjct: 97  AAPPAAAAAAAPAAAAVED 115

Length = 1228

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 15/38 (39%), Positives = 18/38 (47%)

Query: 382 SPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPP 419
            P +A  TP  P+   PTP    + P PAP    PP P
Sbjct: 144 KPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTP 181

Length = 418

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 24/114 (21%), Positives = 31/114 (27%), Gaps = 28/114 (24%)

Query: 386 APSTPPKPSTPTPTPAPEQRTPTPAPPTPSPP---PPPTPKPLTPVPTPLPPVNSPNPPP 442
             +T   P+ P    A   R    A P+  P    PP TP    P P   P       P 
Sbjct: 57  PAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPK 116

Query: 443 RNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPP 496
                     P+P +     P P                  P P P+ +    P
Sbjct: 117 P--------KPKPQQKVEAPPAP-----------------KPEPKPVVEEKAAP 145

Length = 226

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 7e-05
 Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 9/103 (8%)

Query: 145 SNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYL---DLRYNNFEGEVPRELFKMK-LDAI 200
             W  I    + N  L G  PN     + LR+L   +L  N+  G +P  L  +  L+ +
Sbjct: 416 GKW-FIDGLGLDNQGLRGFIPN---DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVL 471

Query: 201 FLNNNRFSSWIPETIGEST-VSVVTFAHNNFSGCVPRSIGNMP 242
            L+ N F+  IPE++G+ T + ++    N+ SG VP ++G   
Sbjct: 472 DLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|217495 pfam03326, Herpes_TAF50, Herpesvirus transcription activation factor (transactivator)

 Score = 45.2 bits (107), Expect = 7e-05
 Identities = 44/174 (25%), Positives = 58/174 (33%), Gaps = 9/174 (5%)

Query: 351 AQRPSQKW--ATTCSPVVSNPVDCSKDVCLGGGSPPS-APSTPPKPSTPTPT--PAPEQR 405
           + RP Q    +        +P + +    L   SP S  PST  +      +    PEQ 
Sbjct: 235 SARPQQSESFSDVWPASTQSPREETSAEPLAPASPSSRRPSTAQEEQIACSSPQAEPEQG 294

Query: 406 TPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEP 465
             +  P +    P   P P T  PT LPP N+     R+ R +  TP Q    +      
Sbjct: 295 VQSYVPQSSDSRPSCFPAPSTTQPTFLPP-NTNKKAKRDRRPQMVTPKQEGGAAVSQNHD 353

Query: 466 SKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPP 519
              +  P   P  S QS P  SPL  S    PS       Q      P      
Sbjct: 354 GGTVRAPRGRPSGSGQSPPSNSPLLSSLADTPS---GAAHQPASLLPPAVVQQQ 404

This family includes EBV BRLF1 and similar ORF 50 proteins from other herpesviruses. Length = 500

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 45.2 bits (107), Expect = 8e-05
 Identities = 26/155 (16%), Positives = 35/155 (22%), Gaps = 8/155 (5%)

Query: 380 GGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPN 439
           GG     P   P  +        + +  + +    +               P  P   P 
Sbjct: 17  GGEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPG 76

Query: 440 PPPRNWRVRSHTPPQ-PWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPP--- 495
                   RS           A       P  P    P     + PP SP P SP P   
Sbjct: 77  TEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASP-PPSPAPDLS 135

Query: 496 ---PPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
               P     PP  + PP            +    
Sbjct: 136 EMLRPVGSPGPPPAASPPAAGASPAAVASDAASSR 170

Length = 1352

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.2 bits (107), Expect = 8e-05
 Identities = 34/220 (15%), Positives = 56/220 (25%), Gaps = 38/220 (17%)

Query: 335 PGSKEGGVFDDTSNCLAQRPSQKWATTCSPVVSNPVDCSKDVCLGGGSPPSAPST----P 390
           PG++       ++       +       +P  +     ++         P A +      
Sbjct: 383 PGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDA 442

Query: 391 PKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSH 450
                P P  A  + +           PP      +   +  PP  +  P PR     + 
Sbjct: 443 ADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAA 502

Query: 451 TPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPP---------------- 494
           TP       APA   S+   P    PP+      PP+P   +P                 
Sbjct: 503 TPAAVPDARAPA-AASREDAPAAAAPPAP--EARPPTPAAAAPAARAGGAAAALDVLRNA 559

Query: 495 ---------------PPPSVKYPPPVQSPPPPTPVQSPPP 519
                            P+       +   P   VQ P P
Sbjct: 560 GMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTP 599

Length = 830

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 44.7 bits (105), Expect = 8e-05
 Identities = 20/88 (22%), Positives = 25/88 (28%), Gaps = 23/88 (26%)

Query: 383 PPSAPSTPPKPS---------------TPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTP 427
           PP+ P   P P                 P PT  P  + P   P   +P   P  +P   
Sbjct: 173 PPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQ 232

Query: 428 VPTPLPPVNSPNPPPRNWRVRSHTPPQP 455
              P       NP  +        PPQ 
Sbjct: 233 PVQPAQQPTPQNPAQQ--------PPQT 252

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.9 bits (107), Expect = 8e-05
 Identities = 11/68 (16%), Positives = 14/68 (20%)

Query: 379 GGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSP 438
           GGG  P      P        P      P    P  +    P        P        P
Sbjct: 396 GGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAAAPQP 455

Query: 439 NPPPRNWR 446
                ++ 
Sbjct: 456 AVRLNSFE 463

Length = 598

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 45.1 bits (107), Expect = 8e-05
 Identities = 20/138 (14%), Positives = 24/138 (17%), Gaps = 23/138 (16%)

Query: 388 STPPKPSTPTPTPAPEQRTPT-PAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWR 446
              P   T +          T P PP         P  L P    LPP            
Sbjct: 53  DLYPPRETGSGGGVATSTIYTVPRPPRGPEQTLDKPDSL-PASRELPPGP---------- 101

Query: 447 VRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQ 506
                 P      A +P            P    Q   P    P       S      + 
Sbjct: 102 ---TPVPPGGFRGASSPRLG----ADSTSPRFLYQVNFPVILAPIGESNSSS----EELS 150

Query: 507 SPPPPTPVQSPPPPVHSP 524
                +            
Sbjct: 151 EEEEHSRPPPSESLKVKN 168

Length = 580

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 26/94 (27%), Positives = 30/94 (31%), Gaps = 16/94 (17%)

Query: 446 RVR--SHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYP- 502
           RV   +H P       A  P P     PP      S Q   P    P++  PP     P 
Sbjct: 67  RVHRVNHAPANAQEHEAARPSPQHQYQPPYA----SAQPRQPVQQPPEAQVPPQHAPRPA 122

Query: 503 --------PPVQSPPPPTPVQSP-PPPVHSPPPP 527
                    P   P P  P+Q P  P V   P P
Sbjct: 123 QPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQP 156

Length = 333

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 45.3 bits (108), Expect = 9e-05
 Identities = 7/69 (10%), Positives = 12/69 (17%)

Query: 380 GGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPN 439
             +   A +   K         P    P   P   +           P         +  
Sbjct: 53  AAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAA 112

Query: 440 PPPRNWRVR 448
                  +R
Sbjct: 113 VEDEVTPLR 121

Length = 1228

>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional

 Score = 45.0 bits (106), Expect = 9e-05
 Identities = 27/183 (14%), Positives = 37/183 (20%), Gaps = 43/183 (23%)

Query: 382 SPPSAPSTPPKPSTPTPTPAPEQRTPTPAP-------------------------PTPSP 416
           +P +A +  P P  PT   AP       +                          P   P
Sbjct: 62  TPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQPVSVP 121

Query: 417 PPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPS---------APAPEPSK 467
              P   P+     P P   +                    P          AP P    
Sbjct: 122 RQAPAAAPVRAASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPVPRAPV 181

Query: 468 PLLPPVQYPPSSVQSTPPPSPLP-------QSPPPPPSVKYPPPVQSPPPPTP--VQSPP 518
                    P    +    +          Q       +    P   PP   P  V +P 
Sbjct: 182 QAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGFDLDDALPQILPPAALPPIVVAPA 241

Query: 519 PPV 521
            P 
Sbjct: 242 APA 244

Length = 559

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.7 bits (106), Expect = 9e-05
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 376 VCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPP 434
               G   P+AP+ PP  + P   PA   R P  A P P+P PP    P      P   
Sbjct: 386 SAAWGAPTPAAPAAPPPAAAPPVPPAAPAR-PAAARPAPAPAPPAAAAPPARSADPAAA 443

Length = 576

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 44.8 bits (106), Expect = 9e-05
 Identities = 31/134 (23%), Positives = 34/134 (25%), Gaps = 16/134 (11%)

Query: 399 TPAPEQRTPTPAPPTPSPPP---PPTPKPLTPVPTPLPP--VNSPNPPPRNWRVRSHTPP 453
                     P   T  P P            VP P+P         P R  R       
Sbjct: 627 VGEMIISGFPPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARG------ 680

Query: 454 QPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTP 513
            P RP+A       P  P    PP      PPP  LP +  P P             PT 
Sbjct: 681 DPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPC-----GSSLIASPTA 735

Query: 514 VQSPPPPVHSPPPP 527
              P PP       
Sbjct: 736 PPEPEPPGAEQADG 749

Length = 753

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 50/179 (27%), Positives = 62/179 (34%), Gaps = 37/179 (20%)

Query: 383 PPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPP 442
           PP      P P  P+  P P    P  + PT  PP    P PL  +P   P  + P  PP
Sbjct: 365 PPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAH-PPPLQLMPQSQPLQSVPAQPP 423

Query: 443 RNWRVRSHTPPQPWRPSA-------PAPEPSKPL----LPPVQYPPSSVQSTPPPSP--- 488
              + +S  P     P +        +P    P     LP +  PPS   STP   P   
Sbjct: 424 VLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPRAS 483

Query: 489 -----------------LPQSPPPPPSVKYPPP-----VQSPPPPTPVQSPPPPVHSPP 525
                             P  P PP  +K  P       +SPPPP    SP P V + P
Sbjct: 484 SGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESPPPPPRSPSPEPTVVNTP 542

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 41/180 (22%), Positives = 52/180 (28%), Gaps = 4/180 (2%)

Query: 352 QRPSQKWATTCSPVVSNPVDCSKDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAP 411
           Q PSQ        V   P    +        P   P+  P+   P P P   Q+    +P
Sbjct: 97  QYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSP 156

Query: 412 PTPSPPP--PPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPL 469
           P        PP      P  + L P  SP  P               +P      PS+  
Sbjct: 157 PQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGAPPSQQF 216

Query: 470 LPPVQYPPSSVQST--PPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
             P Q  P         P S  P    PPPS        S PPP+         ++P   
Sbjct: 217 YGPPQPSPYMYGGPGGRPNSGFPSGQQPPPSQGQEGYGYSGPPPSKGNHGSVASYAPQGS 276

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 23/89 (25%), Positives = 29/89 (32%), Gaps = 6/89 (6%)

Query: 384 PSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPR 443
           PSA  +    ++    P P        PP P  P  P  K     P+P P   SP  P  
Sbjct: 361 PSAFISEIANASAPANPTPAP--NPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVP 418

Query: 444 NWRVRSHTPPQPWRPSAPAPEPSKPLLPP 472
                +   P P  P+  A  P    L  
Sbjct: 419 A--EPTEPSPTP--PANAANAPPSLNLEE 443

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 17/70 (24%), Positives = 22/70 (31%)

Query: 458 PSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSP 517
             A A  P+ P   P   PP +      P     +  P P      P    P      SP
Sbjct: 367 EIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSP 426

Query: 518 PPPVHSPPPP 527
            PP ++   P
Sbjct: 427 TPPANAANAP 436

Length = 620

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 20/76 (26%), Positives = 25/76 (32%), Gaps = 7/76 (9%)

Query: 452 PPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPP 511
            PQP   +A +P PS+                P  +  P   PP  SV  P  V   PP 
Sbjct: 389 APQPSAAAAASPSPSQ-----SSAAAQPSA--PQSATQPAGTPPTVSVDPPAAVPVNPPS 441

Query: 512 TPVQSPPPPVHSPPPP 527
           T  Q+  P        
Sbjct: 442 TAPQAVRPAQFKEEKK 457

Length = 614

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 6/109 (5%)

Query: 385 SAPSTPPKPSTPT-PTPAPEQRTPTPAPPTPSPPPPPTPKPLT-----PVPTPLPPVNSP 438
           + P+  P+PS     +P+P Q +    P  P     P   P T     P   P+ P ++ 
Sbjct: 384 TQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTA 443

Query: 439 NPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPS 487
               R  + +        + S+  P   +P+    +    +++  P  +
Sbjct: 444 PQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNIKEAPTGT 492

Length = 614

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 22/73 (30%), Positives = 24/73 (32%), Gaps = 3/73 (4%)

Query: 414 PSP-PPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPP 472
           PSP   P   K       P P  +     P     R    P P   SAP PE   P+   
Sbjct: 382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSP--ASAPTPEQQPPVARS 439

Query: 473 VQYPPSSVQSTPP 485
              PPS   S P 
Sbjct: 440 APLPPSPQASAPR 452

Length = 620

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 18/69 (26%), Positives = 21/69 (30%), Gaps = 1/69 (1%)

Query: 379 GGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPP-PPPTPKPLTPVPTPLPPVNS 437
              S      TP  P+ P P  AP      PA P  + P P P P      P       +
Sbjct: 383 APPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAA 442

Query: 438 PNPPPRNWR 446
                  WR
Sbjct: 443 AASAGDRWR 451

Length = 576

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 26/149 (17%), Positives = 36/149 (24%), Gaps = 15/149 (10%)

Query: 382 SPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTP-----KPLTPVPTPLPPVN 436
            P   P               +  TPT +P    P     P       +   P  L PV 
Sbjct: 64  QPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPTIQTEPGQLYPVQ 123

Query: 437 SPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPP 496
            P        V     P       PA + +   L      P+S Q   P           
Sbjct: 124 VP--------VMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQL--PSQQQSAQKNDE 173

Query: 497 PSVKYPPPVQSPPPPTPVQSPPPPVHSPP 525
             ++  P  ++PP  T             
Sbjct: 174 SQLQQQPNGETPPQQTDGAGDDESEALVR 202

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 23/78 (29%), Positives = 27/78 (34%), Gaps = 11/78 (14%)

Query: 378 LGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNS 437
            GG  P +AP+          TP   +     A PTP PP    P P      P P   +
Sbjct: 120 TGGAPPAAAPAAAAAAKAEKTTPEKPK----AAAPTPEPPAASKPTPPAAAKPPEPAPAA 175

Query: 438 PNPP-------PRNWRVR 448
             PP       PR  RV 
Sbjct: 176 KPPPTPVARADPRETRVP 193

Length = 418

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 41/162 (25%), Positives = 50/162 (30%), Gaps = 18/162 (11%)

Query: 381 GSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNP 440
             PP  P     P         E+     +  +  P     P           P  +   
Sbjct: 508 DEPPEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEH 567

Query: 441 PPRNWRVRSHTPPQPWRPSAP--APEPSKPLLPPVQYPPSSVQST--PPPSPLPQSPPPP 496
            P      S  P  P  P  P    EP KP  P     P+  +S   P    +P+SP  P
Sbjct: 568 KPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRP 627

Query: 497 PSVKYPPPVQSPPPPTPVQSP-----------PPPVHSPPPP 527
            S K P   + PPPP    SP           P P  SP PP
Sbjct: 628 ESPKSP---KRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPP 666

Length = 943

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 35/141 (24%), Positives = 50/141 (35%), Gaps = 16/141 (11%)

Query: 393 PSTPTPTPAPE-QRTPTPAPPTPSPPPPPT-------PKPLTPVPTPLPPVNS---PNPP 441
           PS   P    +    P P P  P  P  P+       P+P   VP PL P  +     PP
Sbjct: 324 PSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPP 383

Query: 442 PRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSV-QSTPPPSPLPQSPPPPPSVK 500
                    + P   +      +P++P + P     S+V +  P      ++ P  P  +
Sbjct: 384 TSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYAR 443

Query: 501 Y----PPPVQSPPPPTPVQSP 517
           Y    PP   SP  PT V   
Sbjct: 444 YEDLKPPTSPSPTAPTGVSPS 464

Length = 576

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 37/176 (21%), Positives = 43/176 (24%), Gaps = 57/176 (32%)

Query: 383 PPSAPSTPPKPSTPT---PTPAPEQR-------------TPTPAPPTPSPPPPPTPKPLT 426
              AP  P          P P PE+R              PTP  P+         + LT
Sbjct: 24  KEEAPLLPNHKPRTGNGLP-PKPEERWRYIKELENRQIGVPTPTEPSAGGEVNSPTQ-LT 81

Query: 427 P---------------VPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLP 471
                            PT L  V      P N      TP  P                
Sbjct: 82  DEQRQLLEQMQADMRQQPTQLSEV------PYN----EQTPQVP--------------RS 117

Query: 472 PVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
            VQ    + Q  PP +     P  PP     P     P P   Q   P   +   P
Sbjct: 118 TVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAP 173

Length = 256

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 44.3 bits (104), Expect = 2e-04
 Identities = 31/117 (26%), Positives = 39/117 (33%), Gaps = 10/117 (8%)

Query: 408 TPAPP--TPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEP 465
            P  P  TP   P   P+              P  P   ++       QP +P AP P+ 
Sbjct: 739 GPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQ-------QPQQPVAPQPQY 791

Query: 466 SKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVH 522
            +P   PV   P   Q   P +P PQ   P   V   P  Q P  P   Q     +H
Sbjct: 792 QQPQ-QPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLH 847

Length = 1355

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 44.5 bits (106), Expect = 2e-04
 Identities = 8/70 (11%), Positives = 14/70 (20%)

Query: 458 PSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSP 517
            +AP    +           +     P            P+    P   +     P   P
Sbjct: 41  TAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPP 100

Query: 518 PPPVHSPPPP 527
                + P  
Sbjct: 101 AAAAAAAPAA 110

Length = 1228

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 26/86 (30%), Positives = 30/86 (34%), Gaps = 13/86 (15%)

Query: 426 TPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPP 485
               TP PP  SP PP           P   +P+A AP P+ P  PP     SS      
Sbjct: 519 NTAKTPPPPQKSPPPPA--------PTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQI 570

Query: 486 PSPLPQSPPPPPSVKYPPPVQSPPPP 511
           P+     PP P       P  SP   
Sbjct: 571 PADSSPPPPIP-----EEPTPSPTKD 591

Length = 620

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 17/97 (17%), Positives = 28/97 (28%), Gaps = 2/97 (2%)

Query: 401 APEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSA 460
            P    P  A P P+  P    +P  P   P P +       R    R     +   P+A
Sbjct: 53  PPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVE--HAKRLTAQREQLVARAAAPAA 110

Query: 461 PAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPP 497
           P  +             ++ +     +  P+   P  
Sbjct: 111 PEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPAD 147

Length = 484

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 383 PPSAPSTPPKPSTPTPTPAPEQ-RTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPP 441
           PP+ P TPP+P+ P P   P+  + P    P P P P P PK   P P P  P +     
Sbjct: 69  PPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKV-KPQPKPKKPPSKTAAK 127

Query: 442 PRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQ 474
                 +   PP     S  A  PS   L  ++
Sbjct: 128 APAAPNQPARPPSAASASGAATGPSASYLSGLR 160

Length = 244

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 23/86 (26%), Positives = 28/86 (32%)

Query: 388 STPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRV 447
             PP  +   PTPA     P  A P   P  P  P    P P P PP  +  P       
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPA 441

Query: 448 RSHTPPQPWRPSAPAPEPSKPLLPPV 473
            + +    WR      +  KP L   
Sbjct: 442 AAASAGDRWRAFVAFVKGKKPALGAS 467

Length = 576

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 380 GGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAP-PTPSPPPPPTPKPLTPVPTPLPPVNSP 438
                +APS  P    P  TP   +  P   P P P   P P PKP   V  P  P   P
Sbjct: 76  RAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEP 135

Query: 439 NPPP 442
            P  
Sbjct: 136 KPVV 139

Length = 226

>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 23/91 (25%), Positives = 31/91 (34%), Gaps = 10/91 (10%)

Query: 447 VRSHTPPQPWRPSAPAPEPSKPLLP----------PVQYPPSSVQSTPPPSPLPQSPPPP 496
           +++ +   P R  A A + +    P            Q P     S P  SP+   PP P
Sbjct: 348 LKTASLTAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVP 407

Query: 497 PSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
                P  V    P +P  S  P    P PP
Sbjct: 408 QFCGDPGLVSPYNPQSPGTSYGPEPVGPVPP 438

Length = 663

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 28/104 (26%), Positives = 36/104 (34%)

Query: 424 PLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQST 483
            + PV    PP ++  P      + +  P  P +P  P P            P     + 
Sbjct: 38  QIIPVSQQHPPTHTLQPHHHIPVLPAQQPVVPQQPLMPVPGQHSMTPTQHHQPNLPQPAQ 97

Query: 484 PPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
            P  P P  PP P     P P   P PP P Q P PP+    P 
Sbjct: 98  QPFQPQPLQPPQPQQPMQPQPPVHPIPPLPPQPPLPPMFPMQPL 141

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 150 IYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM-KLDAIFLNNNRF 207
           +   D+SNNRL            +L+ LDL  NN     P     +  L ++ L+ N  
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 33/174 (18%), Positives = 47/174 (27%), Gaps = 39/174 (22%)

Query: 381 GSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNP 440
           G   S P+         P P      PTPA   P+P  P            +P +     
Sbjct: 80  GEAGSEPAPAAPEPEAAPEPEAPAPAPTPAAEAPAPAAPQAGGSGEATEVKMPELGE--- 136

Query: 441 PPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPL----------- 489
                 V   T     +      E  +PLL       +    T  PSP+           
Sbjct: 137 -----SVTEGTVTSWLKAVGDTVEVDEPLLE----VSTDKVDTEIPSPVAGTLLEIRAPE 187

Query: 490 ----------------PQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
                             +P  P   + P P ++   P P  +   P  +P PP
Sbjct: 188 DDTVEVGTVLAIIGDANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPP 241

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|223029 PHA03264, PHA03264, envelope glycoprotein D; Provisional

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 26/97 (26%), Positives = 34/97 (35%), Gaps = 5/97 (5%)

Query: 398 PTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPT---PLPPVNSPNPPPRNWRVRSHTPPQ 454
           P PAP   +P P P    P   P P P+               P P  R+        P 
Sbjct: 266 PPPAPSGGSPAP-PGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPG 324

Query: 455 PWRPSAPAPEPSK-PLLPPVQYPPSSVQSTPPPSPLP 490
           P RP+  A  P   P L  + +PP +  +   P   P
Sbjct: 325 PPRPAPDADRPEGWPSLEAITFPPPTPATPAVPRARP 361

Length = 416

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 15/66 (22%), Positives = 19/66 (28%), Gaps = 3/66 (4%)

Query: 382 SPPSAPSTPPKPSTPTPTPAPEQRT---PTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSP 438
           +   A  TP    +P P P              P+P P     P P+   PT   P    
Sbjct: 371 ASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPA 430

Query: 439 NPPPRN 444
           N     
Sbjct: 431 NAANAP 436

Length = 620

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 16/49 (32%), Positives = 17/49 (34%)

Query: 399 TPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRV 447
           T AP     T    + S    P      P P P PP   P PP R  R 
Sbjct: 274 TAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGRG 322

Length = 656

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 21/120 (17%), Positives = 31/120 (25%)

Query: 389 TPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVR 448
                    PT  P+     P      P  P TP   TP      P     P     + +
Sbjct: 43  LLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPK 102

Query: 449 SHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSP 508
               P+P     P P+              +  + PP +         PS  Y   ++  
Sbjct: 103 PKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGLRRA 162

Length = 244

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 33/132 (25%), Positives = 40/132 (30%), Gaps = 13/132 (9%)

Query: 380 GGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPN 439
            G PP       K + P P          P  P P P   P             PV    
Sbjct: 633 SGFPP-----VFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVR--- 684

Query: 440 PPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSV 499
           P   +  +R    PQ  RP  P        LPP    P++    P  S L  SP  PP  
Sbjct: 685 PTAHHAALR---APQAPRPGGPPGGGGG--LPPPPDLPAAAGPAPCGSSLIASPTAPPEP 739

Query: 500 KYPPPVQSPPPP 511
           + P   Q+    
Sbjct: 740 EPPGAEQADGAE 751

Length = 753

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 36/162 (22%), Positives = 50/162 (30%), Gaps = 29/162 (17%)

Query: 383 PPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTP---------------KPLTP 427
           PP++P  P  PS+   +         PA P   P P                   +PL+P
Sbjct: 382 PPTSP-IPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSP 440

Query: 428 --VPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPP 485
                 L P  SP+P          T P    PS  +   S P +P      ++  +  P
Sbjct: 441 YARYEDLKPPTSPSP----------TAPTGVSPSV-SSTSSVPAVPDTAPATAATDAAAP 489

Query: 486 PSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
           P    +   P        P  SP P  PV    P   +    
Sbjct: 490 PPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVK 531

Length = 576

>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB; Provisional

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 25/97 (25%), Positives = 31/97 (31%), Gaps = 20/97 (20%)

Query: 381 GSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNP 440
           G+ P   +  P P  P   P PE   P P     S PP  +     P PT   P N   P
Sbjct: 124 GANPVTATGEPVPQMPASPPGPE-GEPQPGNTPVSFPPQGSVAV--PPPTAFYPGNGVTP 180

Query: 441 PPR-----------------NWRVRSHTPPQPWRPSA 460
           PP+                  +      P  P+ PS 
Sbjct: 181 PPQVTYQSVPVPNRIQRKTFTYNEGKKGPSLPYIPSG 217

Length = 475

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 382 SPPSAP--STPPKPSTPTPTPAPEQRTPTPAPPTPSPPP-PPTPKPLTPVPTPLPPVNSP 438
            PP AP     P P    P  +P    P P+ P  SPPP P +P P     +  PP+ SP
Sbjct: 144 PPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPKSSHPPLKSP 203

Length = 274

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 37/122 (30%), Positives = 41/122 (33%), Gaps = 15/122 (12%)

Query: 379 GGGSPPSAPSTP-PKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNS 437
           GG S PS  +   P        P P  + P    P     P  +  P TP P+  P   S
Sbjct: 376 GGASAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPS-SAAPATPAPSAAP---S 431

Query: 438 PNPPPRNWRVRSHTPPQPWRPSAPA-PEPSKPLLPPVQYPPSSVQS---TPPPSPLPQSP 493
           P  P   W      PP P R   P  P P  P   PV   P SV S    PP    P   
Sbjct: 432 PRVP---W---DDAPPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDT 485

Query: 494 PP 495
             
Sbjct: 486 AE 487

Length = 624

>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 22/65 (33%), Positives = 24/65 (36%), Gaps = 7/65 (10%)

Query: 384 PSAPSTPPKP-----STPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLP-PVNS 437
            +A S  P+P        TP   P     TP P  P   PP    P  P P P P PV  
Sbjct: 84  AAAASVDPQPVAQPPVESTPAGVPVA-AQTPKPVKPPKQPPAGAVPAKPTPKPEPKPVAE 142

Query: 438 PNPPP 442
           P   P
Sbjct: 143 PAAAP 147

Length = 226

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 42.2 bits (98), Expect = 4e-04
 Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 18/143 (12%)

Query: 380 GGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPP-----PPTPKPLTPVPTPLPP 434
             +P  A + P K + P    A        AP   + PP     PP      P     PP
Sbjct: 219 AAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPP 278

Query: 435 VNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPP 494
             +  PP      ++  P     P+  A  P+K    P +   +  ++  PP+   ++  
Sbjct: 279 AKAAAPP-----AKAAAP-----PAKAAAAPAKAAAAPAKAAAAPAKAAAPPA---KAAA 325

Query: 495 PPPSVKYPPPVQSPPPPTPVQSP 517
           PP     PP   + PP     +P
Sbjct: 326 PPAKAATPPAKAAAPPAKAAAAP 348

Length = 357

>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.8 bits (100), Expect = 4e-04
 Identities = 28/157 (17%), Positives = 49/157 (31%), Gaps = 13/157 (8%)

Query: 384 PSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPV-PTPLPPVNSPNPPP 442
           P A ++    +    T        T    T +  P P P+  T   P       +     
Sbjct: 360 PLAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSEG 419

Query: 443 RNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQ-----STPPPSPLP------- 490
           +     S+       P   AP+ ++      Q    S+Q      TPP + +        
Sbjct: 420 KTAGPVSNQENNDVPPWEDAPDEAQTAAGTAQTSAKSIQTASEAETPPENQVSKNKAADN 479

Query: 491 QSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
           ++  P   V    P+Q+ P    V++      +P  P
Sbjct: 480 ETDAPLSEVPSENPIQATPNDEAVETETFAHEAPAEP 516

Length = 709

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 6/62 (9%)

Query: 385 SAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRN 444
           S  S P   +T    P P+        P P  PP P P      P  + P  +P      
Sbjct: 376 SLRSAPTAAATAAGAPLPD------FDPRPRGPPAPEPARSAEAPPLVAPAAAPAGLALR 429

Query: 445 WR 446
           WR
Sbjct: 430 WR 431

Length = 504

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 21/67 (31%), Positives = 25/67 (37%)

Query: 461 PAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPP 520
           PAP P  P        P++    PPP+  P   P  P+   PPP   P  P P    P  
Sbjct: 41  PAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNA 100

Query: 521 VHSPPPP 527
              P P 
Sbjct: 101 PPPPAPE 107

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 42.0 bits (98), Expect = 5e-04
 Identities = 28/117 (23%), Positives = 35/117 (29%), Gaps = 18/117 (15%)

Query: 399 TPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRP 458
           T  P   T   A  T  PP PP   P   +P      +             H P    +P
Sbjct: 156 TYIPAGGTYILASGTYIPPNPPREAPAPGLPKTFTSSHGHR--------HRHAPKPTQQP 207

Query: 459 SAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQ 515
           +   P       P VQ P         P   PQ  P  P+ +  P   +  PP   Q
Sbjct: 208 TVQNPAQQ----PTVQNPA------QQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQ 254

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 476 PPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
           P     +   P+P   + PPP +    PPV    P  P  + P P  +PP  
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAA---PPVPPAAPARPAAARPAPAPAPPAA 430

Length = 576

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 42.6 bits (100), Expect = 6e-04
 Identities = 44/193 (22%), Positives = 51/193 (26%), Gaps = 62/193 (32%)

Query: 396 PTPTPAPEQ-RTPTPAPPTPSPPPPPTPKPL-----------------TPVPTPLPPVNS 437
           P P       R P  A     PPPPP                       P+  P PP   
Sbjct: 257 PPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPDPP 316

Query: 438 PNPPPRNW-----------------RVRSHTP---PQPWRP------------------- 458
           P  P  +                  R R H P   P+  RP                   
Sbjct: 317 PPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPK 376

Query: 459 SAPAPEPSKPLLP----PVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPV 514
            A  P   +        P    P     T P +P+P S P P     P     PPP TP+
Sbjct: 377 RASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPAS-APPPPATPL 435

Query: 515 QSPPPPVHSPPPP 527
            S  P     P P
Sbjct: 436 PSAEPGSDDGPAP 448

Length = 3151

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.3 bits (100), Expect = 6e-04
 Identities = 11/75 (14%), Positives = 15/75 (20%)

Query: 453 PQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPT 512
           P  +              P     P      P      Q+   P           P P  
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 513 PVQSPPPPVHSPPPP 527
           P +  P P  +    
Sbjct: 421 PTEPSPTPPANAANA 435

Length = 620

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 34/113 (30%), Positives = 40/113 (35%), Gaps = 31/113 (27%)

Query: 393 PSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTP 452
           P+T    PAP    P+ A   P+P  PP P P  P   P P  + PN  P         P
Sbjct: 34  PATANADPAPPPPPPSTAAAAPAPAAPPPPPP--PAAPPAPQPDDPNAAP---------P 82

Query: 453 PQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPV 505
           P P  P+AP P P  P  PP                    PP P   +    V
Sbjct: 83  PPPADPNAPPPPPVDPNAPP--------------------PPAPEPGRIDNAV 115

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 16/69 (23%), Positives = 20/69 (28%), Gaps = 3/69 (4%)

Query: 378 LGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPP--PPTPKPLTP-VPTPLPP 434
           L  G+P    +    P+   P   P    P   P  P+ P    P P P  P    P   
Sbjct: 377 LERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPAR 436

Query: 435 VNSPNPPPR 443
              P     
Sbjct: 437 SADPAAAAS 445

Length = 576

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 42.4 bits (99), Expect = 6e-04
 Identities = 33/155 (21%), Positives = 52/155 (33%), Gaps = 20/155 (12%)

Query: 384 PSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTP--------VPTPLPPV 435
              P+ P  P  P     P+      +P +P  PPPP  +P +P        + +P PP 
Sbjct: 603 AQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQ-RPSSPERPEGPKIIKSPKPP- 660

Query: 436 NSPNPP--PR-------NWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPP 486
            SP PP  P+       ++   +    +              L   +   P +  +TP P
Sbjct: 661 KSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRP 720

Query: 487 SPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPV 521
            P P+ P        P        P  ++   PP 
Sbjct: 721 LP-PKLPRDEEFPFEPIGDPDAEQPDDIEFFTPPE 754

Length = 943

>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional

 Score = 42.3 bits (99), Expect = 6e-04
 Identities = 44/174 (25%), Positives = 52/174 (29%), Gaps = 33/174 (18%)

Query: 385 SAPSTPPKPSTPTPTPAPE--QRTPTPAPPTPSPPPPPTPKPLTPVP-------TPLPPV 435
             P   P PS   P    E  Q    P P    P PP  P      P       +  P  
Sbjct: 734 LHPDQAPPPSHQAPYSGHEEPQAQQAPYPGYWEPRPPQAPYLGYQEPQAQGVQVSSYPGY 793

Query: 436 NSPNPP-PRNWRVR----------SHTPPQ-PWRPSAPAPEPSKPLLP------PVQYPP 477
             P     ++ R R           H  PQ PW P  P   P              Q+P 
Sbjct: 794 AGPWGLRAQHPRYRHSWAYWSQYPGHGHPQGPWAPRPPHLPPQWDGSAGHGQDQVSQFPH 853

Query: 478 SSVQSTPPPSPLPQSP----PPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
              ++ PP   L Q P             P   SP P  P++  P P   PPPP
Sbjct: 854 LQSETGPPRLQLSQVPQLPYSQTLVSSSAPSWSSPQPRAPIR--PIPTRFPPPP 905

Length = 1000

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 20/70 (28%), Positives = 24/70 (34%)

Query: 451 TPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPP 510
             P P + S P P P+ PL  P    P      PPP+    S   P  +        P P
Sbjct: 522 KTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIP 581

Query: 511 PTPVQSPPPP 520
             P  SP   
Sbjct: 582 EEPTPSPTKD 591

Length = 620

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 42.0 bits (98), Expect = 7e-04
 Identities = 15/55 (27%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 390 PPKPS-TPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPR 443
            PKP+  PT     +Q T       P   P   P      PTP  P   P    +
Sbjct: 200 APKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQ 254

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional

 Score = 41.9 bits (98), Expect = 7e-04
 Identities = 22/125 (17%), Positives = 31/125 (24%), Gaps = 6/125 (4%)

Query: 401 APEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSA 460
           A  +   T +   PS       K             +    P+      ++ P     +A
Sbjct: 343 AHNEILKTASLTAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTA 402

Query: 461 PAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPP 520
             P P           P  V    P SP     P P     P P      P  + +   P
Sbjct: 403 YPPVPQFC------GDPGLVSPYNPQSPGTSYGPEPVGPVPPQPTNPYVMPISMANMVYP 456

Query: 521 VHSPP 525
            H   
Sbjct: 457 GHPQE 461

Length = 663

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.0 bits (98), Expect = 7e-04
 Identities = 29/90 (32%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 381 GSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNP 440
           G   +AP+    PS+  P        P+P  P    PP P    + P P P  P  SP P
Sbjct: 404 GPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSGIPPRPAPRMPEASPVP 463

Query: 441 -PPRNWRVRSHTPPQPWRPSAPAP-EPSKP 468
             P +    S  PP    PS  A   PS P
Sbjct: 464 GAPDSVASASDAPPTLGDPSDTAEHTPSGP 493

Length = 624

>gnl|CDD|236792 PRK10905, PRK10905, cell division protein DamX; Validated

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 20/97 (20%), Positives = 29/97 (29%), Gaps = 10/97 (10%)

Query: 379 GGGSPPSAPSTPPKPSTPTPTPAPEQRTPTP--------APPTPSPPPPPTPKPLTPVPT 430
            G +      T       T  PA +Q    P          P P    P   +P  PV +
Sbjct: 135 NGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQTPKRTEPAAPVAS 194

Query: 431 PLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSK 467
              P  +  P P+     +  P Q   P+     P+ 
Sbjct: 195 TKAPAATSTPAPKE--TATTAPVQTASPAQTTATPAA 229

Length = 328

>gnl|CDD|226435 COG3921, COG3921, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 41.3 bits (97), Expect = 7e-04
 Identities = 22/90 (24%), Positives = 28/90 (31%), Gaps = 9/90 (10%)

Query: 385 SAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRN 444
           +      + + P P   P   + T  P TP+   P  PK L P+     PV         
Sbjct: 37  NEQKRIAEEAHPQPVARP---SSTDDPVTPTEGKPVRPKGL-PILALAGPVGE----LGQ 88

Query: 445 WRVRSHTPPQPWRPSAPAPEPSKPLLPPVQ 474
                  P  P  P A    PS P  P   
Sbjct: 89  PMDLPA-PANPGDPLALPEPPSPPTKPEEM 117

Length = 300

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 41.6 bits (97), Expect = 8e-04
 Identities = 23/96 (23%), Positives = 31/96 (32%), Gaps = 10/96 (10%)

Query: 390 PPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRS 449
           PP P    P P   +   +         P PT +P    P   P V +P   P       
Sbjct: 173 PPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQP------- 225

Query: 450 HTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPP 485
                  +P  PA +P+     P Q PP + Q    
Sbjct: 226 -QQQPQQQPVQPAQQPTPQ--NPAQQPPQTEQGHKR 258

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|223066 PHA03379, PHA03379, EBNA-3A; Provisional

 Score = 42.0 bits (98), Expect = 8e-04
 Identities = 41/177 (23%), Positives = 53/177 (29%), Gaps = 32/177 (18%)

Query: 380 GGSPPSAPSTPPKPSTPTPTPA-----PEQRTPTPAPPTPSPPPPPTPKPLTPVP----- 429
           G   P           P P PA     P + + +  P     P  P P P+ PVP     
Sbjct: 481 GDQLPGVVQDGRPACAPVPAPAGPIVRPWEASLSQVPGVAFAPVMPQPMPVEPVPVPTVA 540

Query: 430 -----TPLPP---VNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPL------LPPVQY 475
                 P PP   +  P       RVR    P PW P+ P       +      L     
Sbjct: 541 LERPVCPAPPLIAMQGPGETSGIVRVRERWRPAPWTPNPPRSPSQMSVRDRLARLRAEAQ 600

Query: 476 PPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTP-------VQSPPPPVHSPP 525
           P  +     PP  L Q  P  P      P Q   P +P       +++   P   P 
Sbjct: 601 PYQASVEVQPPQ-LTQVSPQQPMEYPLEPEQQMFPGSPFSQVADVMRAGGVPAMQPQ 656

Length = 935

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 14/63 (22%), Positives = 19/63 (30%), Gaps = 3/63 (4%)

Query: 460 APAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPP 519
             AP  + P          +    P         P PP+   P P  +  PP P  +  P
Sbjct: 121 GGAPPAAAPAAAAAAKAEKTTPEKPKA---AAPTPEPPAASKPTPPAAAKPPEPAPAAKP 177

Query: 520 PVH 522
           P  
Sbjct: 178 PPT 180

Length = 418

>gnl|CDD|225629 COG3087, FtsN, Cell division protein [Cell division and chromosome partitioning]

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 24/141 (17%), Positives = 31/141 (21%), Gaps = 6/141 (4%)

Query: 393 PSTPTPTPAPE-QRTPTPAPPTPSPP---PPPTPKPLTPVPTPLPP--VNSPNPPPRNWR 446
                P P    Q T +  P  P                VP P  P  V          R
Sbjct: 38  HHKKAPIPFLSNQGTGSLLPNKPEEVWSYIKALEDRQIGVPQPTEPAAVKDAERLTPEQR 97

Query: 447 VRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQ 506
                     +                + P +  Q     +   Q+ P  P  +   P  
Sbjct: 98  QLLEQMEVDQKAQPTQLGEQPEQARIEEQPRTQSQKAQSQATTVQTQPVKPKPRPEKPQP 157

Query: 507 SPPPPTPVQSPPPPVHSPPPP 527
             P P P      P     PP
Sbjct: 158 VAPAPAPEPVEKAPKAEAAPP 178

Length = 264

>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein UL32

 Score = 41.8 bits (98), Expect = 8e-04
 Identities = 21/108 (19%), Positives = 31/108 (28%), Gaps = 1/108 (0%)

Query: 420 PTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSS 479
              +P        PP  SP P  R   + + +   P    +P P+PS         P + 
Sbjct: 524 KELRPRIGFINKSPPPKSP-PKSRRTLIVALSLASPSTAGSPRPKPSLGKFVIGTDPFAF 582

Query: 480 VQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
             +      +        SVK      S P   P     P   +   P
Sbjct: 583 ANTVRLTDNMRGGNGVGSSVKPKGSASSKPLTGPGSDLKPATLNGKTP 630

The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins. Length = 777

>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional

 Score = 41.0 bits (95), Expect = 9e-04
 Identities = 34/123 (27%), Positives = 40/123 (32%), Gaps = 11/123 (8%)

Query: 405 RTPTPAPPTPSPPPPPTPKPLTPVPTP---LPPVNSPNPPPRNWRVRSHTPPQPWRPSAP 461
           + P+   P    P    P P  P   P    P V  P P P          P    P+ P
Sbjct: 74  QRPSGQSPLAPSPACAAPAPACPACAPAAPAPAVTCPAPAP--------ACPPATAPTCP 125

Query: 462 APEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPV 521
            P        P    P S +  PP  PLP   P P +       Q PPP  P  S P   
Sbjct: 126 PPAVCPAPARPAPACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIE 185

Query: 522 HSP 524
            +P
Sbjct: 186 TAP 188

Length = 280

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 20/85 (23%), Positives = 22/85 (25%), Gaps = 9/85 (10%)

Query: 379 GGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSP 438
           G      A         P     P         P   P P P  KP  P P P   V +P
Sbjct: 70  GAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKP-KPKPKPQQKVEAP 128

Query: 439 NPPPRNWRVRSHTPPQPWRPSAPAP 463
             P           P+P      AP
Sbjct: 129 PAPK--------PEPKPVVEEKAAP 145

Length = 226

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score = 41.4 bits (97), Expect = 9e-04
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 475 YPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPP 519
           Y PSS  +   P   P SPPPP   +   P  SP P     S PP
Sbjct: 200 YKPSSSAAPAAPKAKP-SPPPPKEEEVEKPASSPEPKASKPSAPP 243

Length = 539

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 31/112 (27%), Positives = 38/112 (33%), Gaps = 6/112 (5%)

Query: 353 RPSQKWATTCSPVVSNPVDCSKDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPP 412
           RP    A    P  S+    SK    GG +        P+P  P   P         A  
Sbjct: 837 RPPGA-AARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAA 895

Query: 413 TPSPPPPPTPKPLTPVP-TPLPPVNSPNPPPRN-WRVRSHTPPQPWRPSAPA 462
            P+  P P P+P   V   P+PP     P PR  +R           PSA A
Sbjct: 896 PPAGAPAPRPRPAPRVKLGPMPP---GGPDPRGGFRRVPPGDLHTPAPSAAA 944

Length = 1352

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 28/123 (22%), Positives = 36/123 (29%), Gaps = 19/123 (15%)

Query: 398 PTPAPEQRTPTPAPPTPSPPPP--PTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQP 455
              A +      A P P+ P      P P     T   P N      +     S   P P
Sbjct: 571 AAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQ--AAESRGAPPP 628

Query: 456 WRPSAP-------APE----PSKPLLPPVQYPPSSVQSTPPPSPLPQSP----PPPPSVK 500
           W    P       A E    P    +P     P  V+  P P+  P  P    P PP++ 
Sbjct: 629 WEDIPPDDYVPLSADEGFGGPDDGFVPVFDSGPDDVRVAPKPADAPAPPVDTRPLPPAIP 688

Query: 501 YPP 503
              
Sbjct: 689 LDA 691

Length = 830

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.5 bits (98), Expect = 0.001
 Identities = 19/79 (24%), Positives = 25/79 (31%), Gaps = 3/79 (3%)

Query: 449 SHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSP 508
           S +      P      P     PP+  P ++     PP P P +     +     P  S 
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS 575

Query: 509 PPPTPVQSPPPPVHSPPPP 527
           PPP     P  P  SP   
Sbjct: 576 PPPPI---PEEPTPSPTKD 591

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 17/75 (22%), Positives = 23/75 (30%), Gaps = 2/75 (2%)

Query: 452 PPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPP 511
                  +   P P+    PP      S   T   +  P  PP   S   P PV + P  
Sbjct: 366 SEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASP--PIPVPAEPTE 423

Query: 512 TPVQSPPPPVHSPPP 526
                P    ++PP 
Sbjct: 424 PSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 468 PLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPP 526
           PL PP    P +  +   P+P     PPP S    PP  +   P P  +PPP     PP
Sbjct: 81  PLTPPAPPEPVTPPTAQSPAP-AVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPP 138

Length = 141

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 41.5 bits (98), Expect = 0.001
 Identities = 17/103 (16%), Positives = 22/103 (21%), Gaps = 9/103 (8%)

Query: 400 PAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPP--PRNWRVRSHTPPQPWR 457
           PA         PP  +P     P      P P   V         R   V     P    
Sbjct: 54  PAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAP-WLVEHAKRLTAQREQLVARAAAPAAPE 112

Query: 458 PSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVK 500
             APA    +           + +     +     P  P    
Sbjct: 113 AQAPAAPAERAAAEN------AARRLARAAAAAPRPRVPADAA 149

Length = 484

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 14/56 (25%), Positives = 16/56 (28%), Gaps = 4/56 (7%)

Query: 383 PPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTP----VPTPLPP 434
           P  AP +P     P P           A P  + P    PK   P     P P   
Sbjct: 17  PAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASL 72

Length = 475

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 17/62 (27%), Positives = 19/62 (30%)

Query: 381 GSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNP 440
           G+P S   T   P    P  A   +     P  P    P    P    PTP      P P
Sbjct: 112 GAPLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEP 171

Query: 441 PP 442
            P
Sbjct: 172 AP 173

Length = 418

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 38/189 (20%), Positives = 56/189 (29%), Gaps = 47/189 (24%)

Query: 384 PSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTP--------------------- 422
           P +P +P +P  P    +PE+        +P PP  P P                     
Sbjct: 627 PESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKS 686

Query: 423 ----------------KPLTPVPTPLPPVNSPNP-PPRNWRVRSHTPPQPWRPSAPAPEP 465
                              T   TP  P  +P P PP+  R           P A  P+ 
Sbjct: 687 KETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPFEPIGDPDAEQPDD 746

Query: 466 SKPLLPPVQYPPSSVQSTPPPSPLP-------QSPPPPPSVKYP-PPVQSPPPPTPVQSP 517
            +   PP +   +    TP  +PLP       +          P   ++ P  P+  +  
Sbjct: 747 IEFFTPPEE-ERTFFHETPADTPLPDILAEEFKEEDIHAETGEPDEAMKRPDSPSEHEDK 805

Query: 518 PPPVHSPPP 526
           PP  H   P
Sbjct: 806 PPGDHPSLP 814

Length = 943

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 18/87 (20%), Positives = 25/87 (28%), Gaps = 9/87 (10%)

Query: 379 GGGSPPSAPSTPPKPSTPTPTPAPEQR-------TPTPAPPTPSPPPP-PTPKPLTPVPT 430
                 +     P P+  T      ++        PT A      P P   P+P  P P 
Sbjct: 346 PSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGP-PA 404

Query: 431 PLPPVNSPNPPPRNWRVRSHTPPQPWR 457
           P P  ++  PP              WR
Sbjct: 405 PEPARSAEAPPLVAPAAAPAGLALRWR 431

Length = 504

>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 21/96 (21%), Positives = 31/96 (32%)

Query: 432 LPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQ 491
            P   +   PP        +       SAP   P+   +P    P     ++P  +P P 
Sbjct: 166 FPAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTASPETTPTPS 225

Query: 492 SPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
           +   PPS   P P  +   P    +P       PP 
Sbjct: 226 TTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPT 261

Length = 401

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 460 APAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPP 519
            P P+  + L+P    PPS  ++  P  P P   P          +  P   TPV    P
Sbjct: 132 RPRPDVEEVLVPAAPEPPSYEETIKPG-PAPVEEPVDSMA-----IAVPAIDTPVTLELP 185

Query: 520 PVHSPPPP 527
           P   PPPP
Sbjct: 186 PAPQPPPP 193

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|220260 pfam09483, HpaP, Type III secretion protein (HpaP)

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 4/64 (6%)

Query: 458 PSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSP 517
           P+  AP  ++      +    + ++ PP +P P  P         P     P   P    
Sbjct: 2   PAGAAPRAARRSFDYARLMRRAARAGPPGTPAPPGPAEDA----HPEFPERPRDAPAPPA 57

Query: 518 PPPV 521
           PP  
Sbjct: 58  PPRA 61

This entry represents proteins encoded by genes which are always found in type III secretion operons, although their function in the processes of secretion and virulence is unclear. Hpa stands for Hrp-associated gene, where Hrp stands for hypersensitivity response and virulence. see also PMID:18584024. Length = 185

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 28/115 (24%), Positives = 37/115 (32%), Gaps = 1/115 (0%)

Query: 414 PSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPV 473
           PS P P  P  LT     L   +        +  R      P R    AP P   +    
Sbjct: 206 PSGPGPAAPADLTAAALHLYGASETYLQDEPFVERRVVISHPLRGDIAAPAPPPVVGEGA 265

Query: 474 QYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPP-PPTPVQSPPPPVHSPPPP 527
              P + +    P P P++  P  +   P  V        P+  P PP   PP P
Sbjct: 266 DRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPDPPPPAP 320

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 382 SPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPP 441
           +P     +PP  + P+  PAP           P+P PP  P P      P  P  +P   
Sbjct: 448 APAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPA-APAGA 506

Query: 442 PRNWRVRSHTP 452
                +R   P
Sbjct: 507 DDAATLRERWP 517

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 7/89 (7%)

Query: 354 PSQKWATTCSPVVSNPVDCSKDVCLGGGSPP-------SAPSTPPKPSTPTPTPAPEQRT 406
            +   A    P  + P   +        + P       +    PP  + P     P +  
Sbjct: 408 AAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVA 467

Query: 407 PTPAPPTPSPPPPPTPKPLTPVPTPLPPV 435
           P PA  + +P P   P      PT    V
Sbjct: 468 PEPAVASAAPAPAAAPAAARLTPTEEGDV 496

Length = 618

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 40.5 bits (94), Expect = 0.002
 Identities = 33/168 (19%), Positives = 46/168 (27%), Gaps = 30/168 (17%)

Query: 383 PPSAPSTPPKPSTPTPTPAPEQRTPTPAPP-TPSPPPPPTPKPLTPVPTPLPPVNSPNPP 441
             + P   P      P  AP    P   P   P+P  P       P P      N+    
Sbjct: 392 QYNEPLQQPVQPQQ-PYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAE 450

Query: 442 PRNWRVRSHTPPQP-WRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSP-LPQSPPPPPSV 499
            +     S   PQ  ++      +P+       Q  P   Q    P P + ++ P  P +
Sbjct: 451 EQQ----STFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPL 506

Query: 500 KY----------------------PPPVQSPPPPTPVQSPPPPVHSPP 525
            Y                      P PV+ P P       P     PP
Sbjct: 507 YYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPP 554

Length = 1355

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 18/136 (13%), Positives = 29/136 (21%), Gaps = 8/136 (5%)

Query: 393 PSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTP 452
           P+               A   P+P               +  V            ++   
Sbjct: 360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAV--TGAAGAALAPKAAAA 417

Query: 453 PQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSP-PPP 511
               R  AP   P      P         +    +P+P       S       +   PP 
Sbjct: 418 AAATRAEAPPAAP-----APPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPA 472

Query: 512 TPVQSPPPPVHSPPPP 527
               +  P   +PP  
Sbjct: 473 DSGSASAPASDAPPDA 488

Length = 830

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 449 SHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSP 508
           ++  P P  P       +     P   PP +    P P     +PPPPP+     P   P
Sbjct: 37  ANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPA----DPNAPP 92

Query: 509 PPPTPVQSPPPPVHSP 524
           PPP    +PPPP   P
Sbjct: 93  PPPVDPNAPPPPAPEP 108

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 26/75 (34%), Positives = 29/75 (38%), Gaps = 11/75 (14%)

Query: 379 GGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPT---------PSPPPPPTPKPLTPV- 428
           GG +P  A S   K   P P      R P PA P          PSP   PTP+   PV 
Sbjct: 378 GGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVA 437

Query: 429 -PTPLPPVNSPNPPP 442
              PLPP    + P 
Sbjct: 438 RSAPLPPSPQASAPR 452

Length = 620

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 17/76 (22%), Positives = 20/76 (26%), Gaps = 7/76 (9%)

Query: 401 APEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSA 460
           A E+  P P       P P  P    P   P  P  +P  P       +   P P     
Sbjct: 376 ALERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARP-------AAARPAPAPAPP 428

Query: 461 PAPEPSKPLLPPVQYP 476
            A  P      P    
Sbjct: 429 AAAAPPARSADPAAAA 444

Length = 576

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 20/111 (18%), Positives = 26/111 (23%), Gaps = 9/111 (8%)

Query: 424 PLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPP----SS 479
            L P                 + V             P   P+   LPP   P       
Sbjct: 53  DLYPPRETGSGGGVATST--IYTVPRPPRGPEQTLDKPDSLPASRELPPGPTPVPPGGFR 110

Query: 480 VQSTPPPSPLPQSPPPPPSVKYPP---PVQSPPPPTPVQSPPPPVHSPPPP 527
             S+P       SP     V +P    P+      +   S       PPP 
Sbjct: 111 GASSPRLGADSTSPRFLYQVNFPVILAPIGESNSSSEELSEEEEHSRPPPS 161

Length = 580

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 36/166 (21%), Positives = 52/166 (31%), Gaps = 28/166 (16%)

Query: 382 SPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSP-PPPPTPKPLTPVPTPLPPVNSPNP 440
           SP +A      P++P PTP      P+ +P +         P     VP+P    N P  
Sbjct: 372 SPYTAYEDLKPPTSPIPTP------PSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEV 425

Query: 441 PPRNWRVRSHTPPQPWR-------PSAPAPEPSKPLLPPVQYPPS--------------S 479
            P     +   P  P+        P++P+P     + P V    S               
Sbjct: 426 EPAQVEAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATD 485

Query: 480 VQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPP 525
             + PP +  P SP        PP   SP  P    +P        
Sbjct: 486 AAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVK 531

Length = 576

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 381 GSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSP 438
           G   +AP+ P +   P P+ A  +  P PA   P   P P             P  + 
Sbjct: 201 GDANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPA-PAPAKTAAPAAAA 257

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 23/70 (32%), Positives = 26/70 (37%), Gaps = 11/70 (15%)

Query: 458 PSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPV-------QSPPP 510
           P     EP     P +   P   +  P P   P S PP  SV  PPP         +PPP
Sbjct: 127 PVTATGEPV----PQMPASPPGPEGEPQPGNTPVSFPPQGSVAVPPPTAFYPGNGVTPPP 182

Query: 511 PTPVQSPPPP 520
               QS P P
Sbjct: 183 QVTYQSVPVP 192

Length = 475

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 481 QSTPPPSPL--PQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
              PPP+P+   Q PPP       PP   P P  P  SPPP   SPPP 
Sbjct: 142 PQPPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPA 190

Length = 274

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 20/85 (23%), Positives = 22/85 (25%), Gaps = 9/85 (10%)

Query: 381 GSPPSAPSTPP--KPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSP 438
             P   P       P+ P P    E   P PAP            P    P  L    +P
Sbjct: 129 LQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEPVDSMAIAVPAIDTPVTLELPPAP 188

Query: 439 NPPPRNWRVRSHTPPQPWRPSAPAP 463
            PPP          PQP        
Sbjct: 189 QPPP-------PVVPQPSTMVVHRR 206

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 7/71 (9%)

Query: 382 SPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPS-------PPPPPTPKPLTPVPTPLPP 434
           +  S        S+ + +  P   +P P    PS       P   P PK  +P P  +  
Sbjct: 7   TSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTL 66

Query: 435 VNSPNPPPRNW 445
             +        
Sbjct: 67  PPAATTQTPQL 77

Length = 590

>gnl|CDD|218597 pfam05466, BASP1, Brain acid soluble protein 1 (BASP1 protein)

 Score = 39.8 bits (92), Expect = 0.002
 Identities = 25/138 (18%), Positives = 41/138 (29%), Gaps = 4/138 (2%)

Query: 386 APSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNW 445
           AP   P+ +        E    +     P+  P P      P  +      + +  P   
Sbjct: 86  APKAEPEKTEGAAEAKAEPPKASDPEQEPAAAPGPAAGGEAPKASEASSQPAESAAPAKE 145

Query: 446 RVRSHTPPQPWRPSAPA---PEPSKPLLPPVQYPPSSVQSTPPPSPLPQ-SPPPPPSVKY 501
             +S    +  +  APA    E      P     PSS ++ P     P  +  P  + K 
Sbjct: 146 EEKSKEEGEAKKTEAPAAAAQETKSDAAPASDSKPSSSEAAPSSKETPAATEAPSSTAKA 205

Query: 502 PPPVQSPPPPTPVQSPPP 519
             P        P ++P  
Sbjct: 206 SAPAAPAEEVKPSEAPAA 223

This family consists of several brain acid soluble protein 1 (BASP1) or neuronal axonal membrane protein NAP-22. The BASP1 is a neuron enriched Ca(2+)-dependent calmodulin-binding protein of unknown function. Length = 233

>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid synthase PfaA

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 23/105 (21%), Positives = 33/105 (31%), Gaps = 7/105 (6%)

Query: 396  PTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQP 455
            P  T AP  ++     P         P          PPV S  P       +S      
Sbjct: 1121 PLATQAPVIKSVVTQAPVVQVTISVAPAAPVLPAVVSPPVVSAAP------AQSVATAVA 1174

Query: 456  WRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVK 500
              P A  P  + P+   V Y PS  Q+  P + +  S      ++
Sbjct: 1175 MAPVAEVP-IAVPVQQSVDYMPSVAQAAAPQASVNDSAIQQVMME 1218

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. Length = 2582

>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2); Provisional

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 34/125 (27%), Positives = 46/125 (36%), Gaps = 22/125 (17%)

Query: 419 PPTPKPLTPVPTPLPPV-NSPNPPPRNWRVRSHTPPQ----PWRPSAPAPEPSK------ 467
           P  P+PL PVP P+PP     NP P +         +    P  P  P P P++      
Sbjct: 283 PVEPEPL-PVPAPVPPTPEDDNPRPTDDEFAVPNFNEGLDVPDNPQDPVPPPNEGKDGNP 341

Query: 468 ---PLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPP----PPTPVQSPPPP 520
               L PP       V       P P + P   + ++   V++PP    P  P Q P  P
Sbjct: 342 NEENLFPPGD---DEVPDESNVPPNPPNVPGGSNSEFSSDVENPPNPPNPDIPEQEPNIP 398

Query: 521 VHSPP 525
             S  
Sbjct: 399 EDSNK 403

Length = 576

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 9/183 (4%)

Query: 98  NITVVAGIDLNGNDIAGYFPAELGWLSD-LALFHVNSNRFCGIIPESLSNWKLIYEFDVS 156
            +T +  +DL+ N+I    P  +G L   L    ++ N+    +P  L N   +   D+S
Sbjct: 114 ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLS 171

Query: 157 NNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM-KLDAIFLNNNRFSSWIPETI 215
            N L      +    ++L  LDL  N    ++P E+  +  L+ + L+NN     +  ++
Sbjct: 172 FNDLSDLPKLLSNL-SNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIE-LLSSL 228

Query: 216 GESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASS 275
                       NN    +P SIGN+ N+  + LSNN       S +G L  L   D S 
Sbjct: 229 SNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN--QISSISSLGSLTNLRELDLSG 286

Query: 276 NSF 278
           NS 
Sbjct: 287 NSL 289

Length = 394

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 4/32 (12%)

Query: 482 STPPPSPLPQSPPPPPSVKYPPPVQSPPPPTP 513
           S PP +P    PPPPP   + PP Q PPPP P
Sbjct: 3   SLPPGNP----PPPPPPPGFEPPSQPPPPPPP 30

Length = 2365

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 4/62 (6%)

Query: 373 SKDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPA----PPTPSPPPPPTPKPLTPV 428
            K        P + P++ P P+   P       +  PA      +PS        P +P 
Sbjct: 77  PKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPS 136

Query: 429 PT 430
            +
Sbjct: 137 TS 138

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|235826 PRK06549, PRK06549, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 5/53 (9%)

Query: 381 GSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLP 433
           G+P  A    P     TP P P + +P      P    P        +P+P+P
Sbjct: 22  GAPAQAA--APAQPASTPVPVPTEASPQVEAQAPQ---PAAAAGADAMPSPMP 69

Length = 130

>gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 34/179 (18%), Positives = 48/179 (26%), Gaps = 13/179 (7%)

Query: 352 QRPSQKWATTC--SPVVSNPVDCSKDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTP 409
                K    C  SP  S   + S+         P+   +PP   T T      +R  + 
Sbjct: 135 SSSPAKPPEACLPSPAASTQDELSEASA---APLPTPSLSPPHTPTDTAPSGKRKRRLSD 191

Query: 410 APPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPL 469
               P+P  P T      V  PLP   +       W   + +       +   P P    
Sbjct: 192 GFQLPAPKRPQTSSRPQTVSDPLPLHAT--TDWDTWFQATVSSSPSLLLTGDIPPPVS-- 247

Query: 470 LPPVQYPPSSVQSTPPPSPLPQSPP-PPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
              V  P  S          P  P  PP ++  P P       +    P     S    
Sbjct: 248 ---VFAPDDSTPLDISLFNFPLIPLLPPEALDLPAPTAVSSSSSTFAVPALTSSSVDQS 303

Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is C-terminal to the homeodomain transcription factor region. Length = 418

>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 22/145 (15%), Positives = 28/145 (19%), Gaps = 15/145 (10%)

Query: 383 PPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPP 442
            P A  + P  S      +                 P         P P PPV  P   P
Sbjct: 652 APPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAP-PPVPDPYDRP 710

Query: 443 RNWRVRSHTPPQPWR-PSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKY 501
                       PW      A     P          SV+                  + 
Sbjct: 711 ------------PWEEAPEVASANDGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQV 758

Query: 502 PPPVQSPPP-PTPVQSPPPPVHSPP 525
               QSP       Q+      +  
Sbjct: 759 QAEAQSPASTTALTQTSSEVQDTEL 783

Length = 944

>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed

 Score = 40.1 bits (93), Expect = 0.002
 Identities = 23/122 (18%), Positives = 34/122 (27%), Gaps = 6/122 (4%)

Query: 394 STPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVP---TPLPPVNSPNPPPRNWRVRSH 450
           + P     P       +  TPS    P+P  + P            +      +  V   
Sbjct: 298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPA-VIPSSVTTQSATTTQASAVALSSAGVLPS 356

Query: 451 TPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPP 510
               P   + PA EP      P+    +   ST   +       P  S+   P    P  
Sbjct: 357 DVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANG--PTTSLPAAPASNIPVS 414

Query: 511 PT 512
           PT
Sbjct: 415 PT 416

Length = 421

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 40.4 bits (94), Expect = 0.003
 Identities = 36/165 (21%), Positives = 44/165 (26%), Gaps = 27/165 (16%)

Query: 381 GSPPSAPSTPPKPSTPTPTPAPEQRTPTP-----APPTPSPPPPPTPKPLTPVPTPLPPV 435
            +P  A      P  PTP P P Q  P P       PTP PPP   P  +  +P   P  
Sbjct: 759 AAPGRARPPAAAPGAPTPQPPP-QAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQ 817

Query: 436 NSPN----------------PPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSS 479
             P                 P  +              PS  +    K +  PV YPP  
Sbjct: 818 QGPTKQILRQLLTGGVKRGRPSLKKPAALERQAAAGPTPSPGSGTSDKIVQAPVFYPPVL 877

Query: 480 VQSTPP-----PSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPP 519
                            S       +Y    +   P  P   PP 
Sbjct: 878 QPIQVMRQLGSVRAAAASTVTQAPTEYTGERRGVGPMHPTDIPPS 922

Length = 991

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 19/42 (45%), Positives = 20/42 (47%)

Query: 382 SPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPK 423
           SP  A  TPP  STP   PAP    P PA   P   PP  P+
Sbjct: 98  SPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPPR 139

Length = 141

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 20/60 (33%), Positives = 24/60 (40%)

Query: 381 GSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNP 440
            +P + P  PP  + P P P      P P P  P+ PPPP   P  P P    P    N 
Sbjct: 55  PAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPPPPAPEPGRIDNA 114

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 28/116 (24%), Positives = 37/116 (31%), Gaps = 19/116 (16%)

Query: 419 PPTPKP-LTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPP 477
           P  PKP     P  +P      P           PP+    +  A + + P L P    P
Sbjct: 42  PLVPKPGDRDEPDMMPAATQALPT---------QPPEGAAEAVRAGDAAAPSLDPATVAP 92

Query: 478 SSVQSTPPPSPLPQSPPPPPSVKYPPPVQS------PPPPTPVQSPPPPVHSPPPP 527
            +    P P+P+    PP P     P  +         PP P   P P V     P
Sbjct: 93  PNTPVEPEPAPVE---PPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAP 145

Length = 226

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 21/145 (14%), Positives = 31/145 (21%), Gaps = 18/145 (12%)

Query: 383 PPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPP 442
           P    S     ++   T              P PP  P      P   P      P P P
Sbjct: 57  PRETGSGGGVATSTIYT-------------VPRPPRGPEQTLDKPDSLPASRELPPGPTP 103

Query: 443 RNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYP 502
                            + +P     +  PV    + +  +   S              P
Sbjct: 104 VPPGGFRGASSPRLGADSTSPRFLYQVNFPVI--LAPIGESNSSSEELSEEEEHS---RP 158

Query: 503 PPVQSPPPPTPVQSPPPPVHSPPPP 527
           PP +S       +  P         
Sbjct: 159 PPSESLKVKNGGKVYPKGFSKHKTH 183

Length = 580

>gnl|CDD|225629 COG3087, FtsN, Cell division protein [Cell division and chromosome partitioning]

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 22/139 (15%), Positives = 30/139 (21%), Gaps = 14/139 (10%)

Query: 384 PSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPK-----PLTPVP-TPLPPVNS 437
           P+ P                   PT  P         TP+         V     P    
Sbjct: 57  PNKPEEVWSYIKALEDRQIGVPQPT-EPAAVKDAERLTPEQRQLLEQMEVDQKAQPTQLG 115

Query: 438 PNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPP 497
             P       +  T  Q  +  A      +    PV+  P      P P     +P P  
Sbjct: 116 EQPEQARIEEQPRTQSQKAQSQA---TTVQT--QPVK--PKPRPEKPQPVAPAPAPEPVE 168

Query: 498 SVKYPPPVQSPPPPTPVQS 516
                     P P     +
Sbjct: 169 KAPKAEAAPPPKPKAEDAA 187

Length = 264

>gnl|CDD|221818 pfam12868, DUF3824, Domain of unknwon function (DUF3824)

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 458 PSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSV----KYPPPVQSPPPPTP 513
           P  P P P  P +   +Y P+S    PPP   P  PP P        YPPP  + PPP  
Sbjct: 53  PYDPTPYPPSPPVSDPRYYPNSNYFPPPPGSTPVPPPGPQPGYNPADYPPPPGAVPPPQN 112

Query: 514 VQSPPPP 520
              PP P
Sbjct: 113 YPYPPGP 119

This is a repeating domain found in fungal proteins. It is proline-rich, and the function is not known. Length = 135

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 29/149 (19%), Positives = 42/149 (28%), Gaps = 28/149 (18%)

Query: 380  GGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVP------TPLP 433
            G    + P        P     P  R P PAP   +P     P     +       + L 
Sbjct: 2953 GEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLA 3012

Query: 434  PVNSPNPPPRNWRVRSHTP---------------PQPWRPSAPAPEPSKPLLPPVQYPPS 478
                 +PPP + +     P                +     A  P P +P  P    P  
Sbjct: 3013 LHEETDPPPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEP-- 3070

Query: 479  SVQSTPPPSPLPQSPPPPPSVKYPPPVQS 507
                  P +P   +   P S   PPP+ +
Sbjct: 3071 -----DPATPEAGARESPSSQFGPPPLSA 3094

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.0 bits (94), Expect = 0.004
 Identities = 14/57 (24%), Positives = 16/57 (28%)

Query: 379 GGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPV 435
           GG   P   + P     P P  APE        P  +P P   P        P    
Sbjct: 451 GGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGAD 507

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 12/65 (18%), Positives = 15/65 (23%)

Query: 379 GGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSP 438
                  A   P  P    P+  P         PT +P P P   P        P   + 
Sbjct: 443 SPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAA 502

Query: 439 NPPPR 443
                
Sbjct: 503 PAGAD 507

Length = 824

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 40.1 bits (93), Expect = 0.004
 Identities = 26/97 (26%), Positives = 32/97 (32%), Gaps = 6/97 (6%)

Query: 430 TPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPL 489
            P  P+ +P   P         P QP  P     +P +P+ P  QY        P P   
Sbjct: 739 GPHEPLFTPIVEPVQ------QPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQ 792

Query: 490 PQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPP 526
               P  P  +Y  P Q   P    Q P  PV   P 
Sbjct: 793 QPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQ 829

Length = 1355

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 39.2 bits (91), Expect = 0.004
 Identities = 24/110 (21%), Positives = 28/110 (25%), Gaps = 6/110 (5%)

Query: 423 KPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQS 482
                          P P        +  P Q    + P     +   P  Q    +  S
Sbjct: 36  SSEAHSFHVDSTKQPPAPEQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPS 95

Query: 483 TPPPSPLP--QSPPPPPSVKYPPPVQSPPP----PTPVQSPPPPVHSPPP 526
              PS LP  Q    P           PPP    P P Q P      PPP
Sbjct: 96  HQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPP 145

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 37.5 bits (87), Expect = 0.004
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 466 SKPLLPPVQYPPSSVQSTPPPSPLP---QSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVH 522
           ++ +L P+  P      TPP +  P      PPP S    PP  +   P P  +PPP   
Sbjct: 75  ARKILAPLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPS-D 133

Query: 523 SPPPP 527
            P PP
Sbjct: 134 PPQPP 138

Length = 141

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 39.7 bits (92), Expect = 0.004
 Identities = 40/176 (22%), Positives = 51/176 (28%), Gaps = 33/176 (18%)

Query: 383 PPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPP 442
           P   P+   KP  P     P+       P  P     PT      +P  L    SP  P 
Sbjct: 569 PSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPE 628

Query: 443 RNWRVRSHTPPQPWRPSAPA-PE-------PSKPLLPPVQYPPS---------------- 478
                +   PP P RPS+P  PE       P  P  P   + P                 
Sbjct: 629 SPKSPKR--PPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKS 686

Query: 479 ------SVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPP-PTPVQSPPPPVHSPPPP 527
                  V      S L ++ P  P   +  P   PP  P   + P  P+  P   
Sbjct: 687 KETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPFEPIGDPDAE 742

Length = 943

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 39.6 bits (92), Expect = 0.004
 Identities = 14/63 (22%), Positives = 17/63 (26%)

Query: 379 GGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSP 438
                  A    P PS     PAP+     P      P P P P          P  +  
Sbjct: 204 NAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAPVSSGD 263

Query: 439 NPP 441
           + P
Sbjct: 264 SGP 266

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 452 PPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYP-PPVQSPPP 510
           PP P     P P  + P   P    P+       P P P SPPP  + K   PP++SP  
Sbjct: 146 PPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPKSSHPPLKSPMA 205

Query: 511 PTPVQSPPP 519
            T  +SP P
Sbjct: 206 GTFYRSPAP 214

Length = 274

>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional

 Score = 39.2 bits (91), Expect = 0.004
 Identities = 33/112 (29%), Positives = 41/112 (36%), Gaps = 15/112 (13%)

Query: 364 PVVSNPVDCSKDVCLGGGSPPSAPSTPPKPSTPTP---TPAPEQRTPTPA-----PPTPS 415
           P+     D S D  L   +P   P+    P+TP P   T A  + TPTP+     P T  
Sbjct: 176 PLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTASPETTPTPSTTTSPPSTTI 235

Query: 416 PPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSK 467
           P P  T        TP        P P         PP     + PAPE S+
Sbjct: 236 PAPSTTIAAPQAGTTPEAEGTPAPPTPGG----GEAPPA---NATPAPEASR 280

Length = 401

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 20/80 (25%), Positives = 26/80 (32%), Gaps = 4/80 (5%)

Query: 441 PPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPS--SVQSTPPPSPLPQ--SPPPP 496
                             S+ +  PS     P +  PS  S+  TP   PLP+  SP PP
Sbjct: 3   SSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPP 62

Query: 497 PSVKYPPPVQSPPPPTPVQS 516
                P      P   P+Q 
Sbjct: 63  SVTLPPAATTQTPQLNPLQR 82

Length = 590

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 39.5 bits (92), Expect = 0.004
 Identities = 13/66 (19%), Positives = 18/66 (27%), Gaps = 1/66 (1%)

Query: 376 VCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPV 435
           V +            P  +TPT  P P    P       S  P    +  +P        
Sbjct: 71  VVMVSKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEES-ATA 129

Query: 436 NSPNPP 441
            +P  P
Sbjct: 130 TAPESP 135

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 26/79 (32%), Positives = 28/79 (35%), Gaps = 1/79 (1%)

Query: 414 PSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPV 473
            SPP    P    PV  P PPV    PP     V          P  P P    P  PP 
Sbjct: 29  FSPPESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPS 88

Query: 474 Q-YPPSSVQSTPPPSPLPQ 491
              PP+  +  P P P PQ
Sbjct: 89  PLAPPAPARKPPLPPPRPQ 107

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 20/94 (21%), Positives = 27/94 (28%), Gaps = 12/94 (12%)

Query: 406 TPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEP 465
           T T    TP+P  P      TP  +  P V +   P           PQ     AP+   
Sbjct: 168 TTTDPATTPAPAAPVDT---TPTNSQTPAVATAPAPA--------VDPQQNAVVAPSQAN 216

Query: 466 SKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSV 499
                 P      +      P P  Q+    P+ 
Sbjct: 217 VDTAATPAP-AAPATPDGAAPLPTDQAGVSTPAA 249

Length = 331

>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 23/92 (25%), Positives = 31/92 (33%), Gaps = 8/92 (8%)

Query: 384 PSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTP------KPLTPVPTPLPPVNS 437
            S P+T  KP+  T TP      P   P  P P P P            P     P   S
Sbjct: 102 MSEPATENKPAEVT-TPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPRAKS 160

Query: 438 PNP-PPRNWRVRSHTPPQPWRPSAPAPEPSKP 468
           P P      +       +  + +A AP+P+  
Sbjct: 161 PRPAAKAAPKPTETITAKKAKKTAAAPKPTAD 192

Length = 209

>gnl|CDD|132858 cd07219, Pat_PNPLA1, Patatin-like phospholipase domain containing protein 1

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 442 PRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKY 501
           P+      H PP     +AP       +  PV   P+S   + P  P   +   P S+  
Sbjct: 312 PKGDGRGLHDPPLSPPLAAPESTAEWVVESPVS-SPASPLESSPSLPGSLTDLSPASL-- 368

Query: 502 PPPVQSPPPPTP 513
            P V S P  TP
Sbjct: 369 -PAVHSLPSSTP 379

Members of this family share a patatin domain, initially discovered in potato tubers. Some members of PNPLA1 subfamily do not have the lipase consensus sequence Gly-X-Ser-X-Gly which is essential for hydrolase activity. This family includes PNPLA1 from Homo sapiens and Gallus gallus. Currently, there is no literature available on the physiological role, structure, or enzymatic activity of PNPLA1. It is expressed in various human tissues in low mRNA levels. Length = 382

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 16/65 (24%), Positives = 20/65 (30%), Gaps = 5/65 (7%)

Query: 379 GGGSPPSAPSTPPKPSTPT-----PTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLP 433
           G        + PP  S  T     P P       +P PP     PP  P+P  P    + 
Sbjct: 49  GLEDVTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAENTVT 108

Query: 434 PVNSP 438
               P
Sbjct: 109 VAKDP 113

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	527
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.96
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.95
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.94
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.89
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.88
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.86
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.85
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.82
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.82
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.79
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.77
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.76
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.73
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.73
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.42
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.42
PLN03150	623	hypothetical protein; Provisional	99.39
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.37
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.36
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.31
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.31
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.23
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.23
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.18
PLN03150	623	hypothetical protein; Provisional	99.18
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.15
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.11
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.11
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.09
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.08
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	99.03
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.82
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.81
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.79
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.79
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.71
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.66
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.58
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.57
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.34
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.22
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.2
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.11
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.04
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.9
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.81
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	97.81
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.8
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.77
PRK15386	426	type III secretion protein GogB; Provisional	97.74
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.64
PRK15386	426	type III secretion protein GogB; Provisional	97.53
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	97.53
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.33
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.29
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.1
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.06
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.05
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.01
KOG4341	483	consensus F-box protein containing LRR [General fu	96.95
KOG4308	478	consensus LRR-containing protein [Function unknown	96.63
KOG4308	478	consensus LRR-containing protein [Function unknown	96.63
KOG4341	483	consensus F-box protein containing LRR [General fu	96.39
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.88
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.27
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.78
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.46
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.26
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.44
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	92.8
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.47
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.45
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.32
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	89.96
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	88.79
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.6
smart00370	26	LRR Leucine-rich repeats, outliers.	88.6
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.85
smart00370	26	LRR Leucine-rich repeats, outliers.	86.85
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.75
PRK09718	512	hypothetical protein; Validated	81.27

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6.4e-33  Score=317.35  Aligned_cols=273  Identities=30%  Similarity=0.476  Sum_probs=183.2

Q ss_pred             CCCCC-CCCCccccceeeCCCCCCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccc--------
Q 045837           74 QGNWV-GTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESL--------  144 (527)
Q Consensus        74 ~~~w~-~~~~c~~~gv~c~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~--------  144 (527)
                      +.+|. +.++|.|.|+.|..      ..+++.|+|++|.+.+.++..|..+++|++|+|++|++.+.++..+        
T Consensus        48 ~~~w~~~~~~c~w~gv~c~~------~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~  121 (968)
T PLN00113         48 LSNWNSSADVCLWQGITCNN------SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLR  121 (968)
T ss_pred             CCCCCCCCCCCcCcceecCC------CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCC
Confidence            34785 56899999999963      1245555555555555444445555555555555555544443332        


Q ss_pred             ---------------cCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhc-cccchhhccccccc
Q 045837          145 ---------------SNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFS  208 (527)
Q Consensus       145 ---------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~  208 (527)
                                     +.+.+|++|+|++|.+.+.++..+..+.+|++|+|++|.+.+.++..+.. .+|++|+|++|.+.
T Consensus       122 ~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  201 (968)
T PLN00113        122 YLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV  201 (968)
T ss_pred             EEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc
Confidence                           23445555555555555555556666667777777777666666665554 56777777777776


Q ss_pred             cccccccCC-CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccC
Q 045837          209 SWIPETIGE-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFS  287 (527)
Q Consensus       209 ~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  287 (527)
                      +.++..++. .+|++|+|++|++.+.++..|+++.+|++|+|++|.+.+.++..++++++|++|+|++|++++.++..+.
T Consensus       202 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  281 (968)
T PLN00113        202 GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF  281 (968)
T ss_pred             CcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh
Confidence            666655543 4477777777777777777777777777777777777767777777777777777777777777777777


Q ss_pred             CCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCC
Q 045837          288 SLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQ  352 (527)
Q Consensus       288 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  352 (527)
                      .+.+|++|+|++|.+.+.++..+.++.+|++|++++|.+.+..+..+..+.+|+.|++++|.+++
T Consensus       282 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  346 (968)
T PLN00113        282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG  346 (968)
T ss_pred             hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcC
Confidence            77777777777777777777777777777777777777777777777777788888888887764

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.96  E-value=6.5e-29  Score=284.37  Aligned_cols=233  Identities=29%  Similarity=0.466  Sum_probs=123.4

Q ss_pred             cceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEe
Q 045837           99 ITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLD  178 (527)
Q Consensus        99 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  178 (527)
                      +.+|++|+|++|.+.+.++..++++++|++|+|++|.+.+.++..|.++.+|++|+|++|++.+.++..+.++.+|++|+
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY  218 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence            44555555555555555555555566666666666655555555555566666666666655555555555555566666


Q ss_pred             cccCCCCCCcchhhhc-cccchhhccccccccccccccCC-CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCC
Q 045837          179 LRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIGE-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMG  256 (527)
Q Consensus       179 Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  256 (527)
                      |++|.+.+.++..+.. .+|++|+|++|.+.+.++..++. .+|++|++++|++.+.++..+.++.+|++|+|++|.+.+
T Consensus       219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  298 (968)
T PLN00113        219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG  298 (968)
T ss_pred             CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence            6555555555554444 45555555555555544444433 235555555555555444455555555555555555554


Q ss_pred             CChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCC
Q 045837          257 CLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGN  331 (527)
Q Consensus       257 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~  331 (527)
                      .++..+.++++|++|++++|.+++.++..+..+.+|+.|+|++|.+++.++..+..+.+|+.|++++|++++..+
T Consensus       299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p  373 (968)
T PLN00113        299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP  373 (968)
T ss_pred             CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence            455445555555555555555544444444444455555555554444444444444444444444444444333

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.95  E-value=4.1e-29  Score=248.29  Aligned_cols=262  Identities=18%  Similarity=0.221  Sum_probs=170.2

Q ss_pred             CCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccE
Q 045837           97 SNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRY  176 (527)
Q Consensus        97 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  176 (527)
                      ..+..|+.|||+.|.|+.+-...|..-.+|++|+|++|+|+.+.-+.|.++.+|.+|.|++|+++..-...|.+|.+|+.
T Consensus       146 ~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~  225 (873)
T KOG4194|consen  146 SALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLES  225 (873)
T ss_pred             HhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhh
Confidence            34455566666666655544445554455666666666665555555555555666666666655444444555555555


Q ss_pred             EecccCCCCC-----------------------Ccchhhhc--cccchhhccccccccccccc-cCCCCcceEeccCCcC
Q 045837          177 LDLRYNNFEG-----------------------EVPRELFK--MKLDAIFLNNNRFSSWIPET-IGESTVSVVTFAHNNF  230 (527)
Q Consensus       177 L~Ls~n~i~~-----------------------~~p~~~~~--~~L~~L~L~~n~l~~~~~~~-~~~~~L~~L~L~~n~l  230 (527)
                      |+|..|.|.-                       .+.+..|.  .++++|+|..|+++.....+ |+...|+.|+|++|.|
T Consensus       226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI  305 (873)
T KOG4194|consen  226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI  305 (873)
T ss_pred             hhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhh
Confidence            5555555531                       22222222  35666666666665543333 3445567777777777


Q ss_pred             CccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcch---
Q 045837          231 SGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVS---  307 (527)
Q Consensus       231 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~---  307 (527)
                      ..+..+++.-..+|++|+|++|+|+..-+..|..+..|++|+|++|.+...-...|.++++|+.|||++|.|...+.   
T Consensus       306 ~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa  385 (873)
T KOG4194|consen  306 QRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA  385 (873)
T ss_pred             heeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch
Confidence            76666666666677777777777775556666667777777777777765555567778888888888888876543   


Q ss_pred             hhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCCCC
Q 045837          308 EQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKW  358 (527)
Q Consensus       308 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  358 (527)
                      ..|.++++|+.|+|.+|+|..+....|.++.+|+.|||.+|.|.++....+
T Consensus       386 ~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAF  436 (873)
T KOG4194|consen  386 VAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAF  436 (873)
T ss_pred             hhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccc
Confidence            357788899999999999999888899999999999999999987654433

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.94  E-value=3.6e-28  Score=241.56  Aligned_cols=258  Identities=21%  Similarity=0.196  Sum_probs=214.0

Q ss_pred             CcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEE
Q 045837           98 NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYL  177 (527)
Q Consensus        98 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  177 (527)
                      ...+|+.|+|.+|.|..+-.+.+..+..|+.|||+.|.|+.+-..+|..-.+|++|+|++|+|+..--+.|.++.+|..|
T Consensus       123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl  202 (873)
T KOG4194|consen  123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL  202 (873)
T ss_pred             cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee
Confidence            34579999999999988877888999999999999999998777788888899999999999998888889999999999


Q ss_pred             ecccCCCCCCcchhhhc--cccchhhccccccccccc-------------------------cccCCCCcceEeccCCcC
Q 045837          178 DLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIP-------------------------ETIGESTVSVVTFAHNNF  230 (527)
Q Consensus       178 ~Ls~n~i~~~~p~~~~~--~~L~~L~L~~n~l~~~~~-------------------------~~~~~~~L~~L~L~~n~l  230 (527)
                      .|++|.|+ .++...|.  .+|+.|+|..|+|.-.-.                         .+++..++++|+|+.|++
T Consensus       203 kLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l  281 (873)
T KOG4194|consen  203 KLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL  281 (873)
T ss_pred             ecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence            99999999 78777666  588999988888753211                         222445677888888888


Q ss_pred             CccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhh
Q 045837          231 SGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQI  310 (527)
Q Consensus       231 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l  310 (527)
                      ...--.++.+++.|+.|+||+|.|..+..+.|....+|++|||++|+|+..-+..|..+..|+.|+|++|.|+.+....|
T Consensus       282 ~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af  361 (873)
T KOG4194|consen  282 QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF  361 (873)
T ss_pred             hhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH
Confidence            87666777888888888888888887777888888888888888888887777778888888888888888887777788


Q ss_pred             hCCCCCcEEEecCcccCCCCC---CCCCCCCCCceecCCCCCCCCCCCC
Q 045837          311 CKLPNINNFTFSYNYFQGLGN---ECIPGSKEGGVFDDTSNCLAQRPSQ  356 (527)
Q Consensus       311 ~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~~~~~~  356 (527)
                      ..+.+|++|||++|.|...+.   ..|.++++|+.|++.+|+|..++..
T Consensus       362 ~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~kr  410 (873)
T KOG4194|consen  362 VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKR  410 (873)
T ss_pred             HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchh
Confidence            888999999999998876543   3478899999999999999877644

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.89  E-value=4.7e-25  Score=220.84  Aligned_cols=251  Identities=22%  Similarity=0.321  Sum_probs=142.4

Q ss_pred             CCCcceEEEEEcCCCCcC-CCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcc
Q 045837           96 NSNITVVAGIDLNGNDIA-GYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSL  174 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  174 (527)
                      .+.+.+|+.+++++|++. .-+|..+..+..|..|||++|++. ..|..+.+.+++-+|+|++|+|..+--..|.+|..|
T Consensus        74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDL  152 (1255)
T KOG0444|consen   74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDL  152 (1255)
T ss_pred             hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhH
Confidence            345666777777777663 235666777777777777777776 455666666777777777777763333345566777


Q ss_pred             cEEecccCCCCCCcchhhhc-cccchhhcccccccccccccc-CCCCcceEeccCCcC-CccCCCCCCCCCCCcEEEccc
Q 045837          175 RYLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETI-GESTVSVVTFAHNNF-SGCVPRSIGNMPNVNEIILSN  251 (527)
Q Consensus       175 ~~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~L~~n~l-~~~~~~~l~~l~~L~~L~Ls~  251 (527)
                      -+|||++|++. .+|..+.. ..|++|.|++|.+.-.--..+ ...+|+.|.+++.+= ...++.++..+.+|..+|||.
T Consensus       153 LfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~  231 (1255)
T KOG0444|consen  153 LFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE  231 (1255)
T ss_pred             hhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence            77777777776 66665555 567777777776532111111 122345555544322 124455555556666666666


Q ss_pred             CCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccC-CCC
Q 045837          252 NDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQ-GLG  330 (527)
Q Consensus       252 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~  330 (527)
                      |++. .+|+.+.++.+|+.|+||+|+|+ .+.-......+|++|+||+|+++ .+|..++++++|+.|.+.+|+++ +.+
T Consensus       232 N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGi  308 (1255)
T KOG0444|consen  232 NNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGI  308 (1255)
T ss_pred             cCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCC
Confidence            6665 55666666666666666666655 33333344455566666666655 34555555555555555555544 122


Q ss_pred             CCCCCCCCCCceecCCCCCCC
Q 045837          331 NECIPGSKEGGVFDDTSNCLA  351 (527)
Q Consensus       331 ~~~~~~l~~L~~L~l~~N~l~  351 (527)
                      +..++.+..|+++...+|.+.
T Consensus       309 PSGIGKL~~Levf~aanN~LE  329 (1255)
T KOG0444|consen  309 PSGIGKLIQLEVFHAANNKLE  329 (1255)
T ss_pred             ccchhhhhhhHHHHhhccccc
Confidence            344444444444444444443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.88  E-value=1.2e-24  Score=217.86  Aligned_cols=254  Identities=22%  Similarity=0.263  Sum_probs=190.4

Q ss_pred             CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCccc
Q 045837           96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLR  175 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  175 (527)
                      ...++.|+.|||++|++.. .|..+.+-+++-.|+|++|+|.++-...|-+|..|-+|||++|++. .+|..+..|.+|+
T Consensus        99 iF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~Lq  176 (1255)
T KOG0444|consen   99 IFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQ  176 (1255)
T ss_pred             hcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhh
Confidence            5578899999999999976 6788999999999999999999776667789999999999999998 7788888999999


Q ss_pred             EEecccCCCCCCcchhhhc-cccchhhccccccc-ccccccc-CCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccC
Q 045837          176 YLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFS-SWIPETI-GESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNN  252 (527)
Q Consensus       176 ~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~-~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N  252 (527)
                      .|+|++|.+.-.--..+-. ++|+.|++++.+-+ ..++..+ +..+|..++|+.|++. .+++.+.++.+|+.|+||+|
T Consensus       177 tL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N  255 (1255)
T KOG0444|consen  177 TLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGN  255 (1255)
T ss_pred             hhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcC
Confidence            9999999875111111111 47788888776543 2233333 3356788888888877 66777777888888888888


Q ss_pred             CCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCC-cchhhhhCCCCCcEEEecCcccCCCCC
Q 045837          253 DLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTG-YVSEQICKLPNINNFTFSYNYFQGLGN  331 (527)
Q Consensus       253 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~~  331 (527)
                      .|+ ++....+...+|++|+||+|+++ .+|..++.+++|+.|++.+|+++- -+|..++++..|+++..++|.+. .++
T Consensus       256 ~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVP  332 (1255)
T KOG0444|consen  256 KIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVP  332 (1255)
T ss_pred             cee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCc
Confidence            887 55555666777888888888887 777777788888888888887652 25666777777777777777664 446


Q ss_pred             CCCCCCCCCceecCCCCCCCCCCC
Q 045837          332 ECIPGSKEGGVFDDTSNCLAQRPS  355 (527)
Q Consensus       332 ~~~~~l~~L~~L~l~~N~l~~~~~  355 (527)
                      ..++.|..|+.|.|+.|.+...+.
T Consensus       333 EglcRC~kL~kL~L~~NrLiTLPe  356 (1255)
T KOG0444|consen  333 EGLCRCVKLQKLKLDHNRLITLPE  356 (1255)
T ss_pred             hhhhhhHHHHHhcccccceeechh
Confidence            667777777777777777776653

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.86  E-value=3.4e-24  Score=204.98  Aligned_cols=252  Identities=21%  Similarity=0.320  Sum_probs=206.4

Q ss_pred             CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCccc
Q 045837           96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLR  175 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  175 (527)
                      ..++..+++|++.+|.+.. ++.+++.+..++.|++++|++. .+++.++.+..|+.|++++|++. .+++.++.+..|.
T Consensus        64 l~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~  140 (565)
T KOG0472|consen   64 LKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLE  140 (565)
T ss_pred             hhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhh
Confidence            5567788888998888876 5668888888888999999888 66778888888999999999888 6677788888899


Q ss_pred             EEecccCCCCCCcchhhhc-cccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCC
Q 045837          176 YLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDL  254 (527)
Q Consensus       176 ~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l  254 (527)
                      .|+..+|+++ .++..++. .+|..+++.+|.+....+..+....|++|++..|.+. .+|..++.+.+|+-|||..|+|
T Consensus       141 dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki  218 (565)
T KOG0472|consen  141 DLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKI  218 (565)
T ss_pred             hhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccc
Confidence            9999999988 66766665 6888999999998888777777677899998888777 6778889999999999999999


Q ss_pred             CCCChhhccCCCCCCEEEccCCcccccCCcc-cCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCC
Q 045837          255 MGCLPSEIGWLKKLTVFDASSNSFYGSVPQS-FSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNEC  333 (527)
Q Consensus       255 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~  333 (527)
                      . .+| +|.++..|++|+++.|+|. .++.. ..++.+|..|||..|+++ ..|+.++-+.+|++||+++|.+++.. ..
T Consensus       219 ~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp-~s  293 (565)
T KOG0472|consen  219 R-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLP-YS  293 (565)
T ss_pred             c-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCC-cc
Confidence            8 777 7888999999999999887 44544 448888999999999998 56778888888999999999998874 45


Q ss_pred             CCCCCCCceecCCCCCCCCCCCCCC
Q 045837          334 IPGSKEGGVFDDTSNCLAQRPSQKW  358 (527)
Q Consensus       334 ~~~l~~L~~L~l~~N~l~~~~~~~~  358 (527)
                      ++++ .|+.|-+.||.+..+-....
T Consensus       294 Lgnl-hL~~L~leGNPlrTiRr~ii  317 (565)
T KOG0472|consen  294 LGNL-HLKFLALEGNPLRTIRREII  317 (565)
T ss_pred             cccc-eeeehhhcCCchHHHHHHHH
Confidence            7777 88888899998886554433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.85  E-value=1.9e-24  Score=206.71  Aligned_cols=260  Identities=21%  Similarity=0.285  Sum_probs=225.2

Q ss_pred             EEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEeccc
Q 045837          102 VAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRY  181 (527)
Q Consensus       102 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  181 (527)
                      ++.++|++|.+... .+.+.++..|.+|++.+|++. ..+.+++.+..++.|++++|.+. .+++.+..+.+|+.|++++
T Consensus        47 l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~  123 (565)
T KOG0472|consen   47 LQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS  123 (565)
T ss_pred             hhhhhhccCchhhc-cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence            77899999999764 457889999999999999998 55668999999999999999998 7888889999999999999


Q ss_pred             CCCCCCcchhhhc-cccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChh
Q 045837          182 NNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPS  260 (527)
Q Consensus       182 n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~  260 (527)
                      |.+. .+++.++. ..|+.++..+|+++......+...++..|++.+|++....++.+. |+.|++||+..|.++ .+|.
T Consensus       124 n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~  200 (565)
T KOG0472|consen  124 NELK-ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPP  200 (565)
T ss_pred             ccee-ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCCh
Confidence            9998 67777766 799999999999998777766777899999999999966655555 999999999999998 8999


Q ss_pred             hccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCC
Q 045837          261 EIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEG  340 (527)
Q Consensus       261 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  340 (527)
                      .++.+.+|+-|+|.+|+|. .+| .|.++..|++|+++.|+|.-...+...++.+|.+|||++|+++.. |..++-+++|
T Consensus       201 ~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~-Pde~clLrsL  277 (565)
T KOG0472|consen  201 ELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEV-PDEICLLRSL  277 (565)
T ss_pred             hhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccC-chHHHHhhhh
Confidence            9999999999999999998 666 899999999999999999855555566999999999999999986 6667888999


Q ss_pred             ceecCCCCCCCCCCCCCCCCcc--cccccCCC
Q 045837          341 GVFDDTSNCLAQRPSQKWATTC--SPVVSNPV  370 (527)
Q Consensus       341 ~~L~l~~N~l~~~~~~~~~~~~--~~~~~np~  370 (527)
                      .+||+++|.|++.+.....-.-  ..+.+||.
T Consensus       278 ~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPl  309 (565)
T KOG0472|consen  278 ERLDLSNNDISSLPYSLGNLHLKFLALEGNPL  309 (565)
T ss_pred             hhhcccCCccccCCcccccceeeehhhcCCch
Confidence            9999999999999877655422  23456765

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.82  E-value=6.4e-22  Score=189.23  Aligned_cols=252  Identities=17%  Similarity=0.153  Sum_probs=187.5

Q ss_pred             ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeec-CcCcccCCcccccCCcccEEe
Q 045837          100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSN-NRLVGSFPNVCLSWTSLRYLD  178 (527)
Q Consensus       100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~  178 (527)
                      ...+.|+|..|+|+.+-+..|..+++|+.|||++|+|+.+-+++|.++..|.+|-+.+ |+|+....+.|.+|..|+.|.
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            3567899999999998888999999999999999999999999999999988877766 999977778899999999999


Q ss_pred             cccCCCCCCcchhhhc-cccchhhccccccccccccccC-CCCcceEeccCCcCCc------------cCCCCCCCCCCC
Q 045837          179 LRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIG-ESTVSVVTFAHNNFSG------------CVPRSIGNMPNV  244 (527)
Q Consensus       179 Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~------------~~~~~l~~l~~L  244 (527)
                      +.-|++.....+.+.. .+|..|.+..|.+.......+. ...++.+.+..|.+..            ..+..++.+.-.
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            9999888444343333 5788888888887665443443 3346666666665221            111112221111


Q ss_pred             cEEEc-------------------------ccCCCCCCCh-hhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEecc
Q 045837          245 NEIIL-------------------------SNNDLMGCLP-SEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLS  298 (527)
Q Consensus       245 ~~L~L-------------------------s~N~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  298 (527)
                      .-..|                         +.+...++.| ..|..+.+|++|+|++|+|+++-..+|.++..|++|.|.
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~  306 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT  306 (498)
T ss_pred             chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence            11111                         1122222333 357788889999999999988888888888899999999


Q ss_pred             CCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCC
Q 045837          299 YNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLA  351 (527)
Q Consensus       299 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  351 (527)
                      .|+|..+....|.++..|++|+|.+|+|+...+..|..+..|..|++-.|.+.
T Consensus       307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             cchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            99888777778888888999999999998888888888888888888777765

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.82  E-value=9.4e-22  Score=205.87  Aligned_cols=243  Identities=21%  Similarity=0.315  Sum_probs=157.8

Q ss_pred             ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837          100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL  179 (527)
Q Consensus       100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  179 (527)
                      .+++.+++++|++++ +++.++.+.+|+.|++.+|+++ .++..+....+|+.|++.+|.+. -++....+++.|+.|+|
T Consensus       241 ~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             ccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence            466677777777766 3466677777777777777774 45555666667777777777776 55666677889999999


Q ss_pred             ccCCCCCCcchhhhc---cccchhhccccccccccccc-cCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCC
Q 045837          180 RYNNFEGEVPRELFK---MKLDAIFLNNNRFSSWIPET-IGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLM  255 (527)
Q Consensus       180 s~n~i~~~~p~~~~~---~~L~~L~L~~n~l~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  255 (527)
                      ..|+|. .+++.++.   ..|+.|+.+.|++....... .....|+.|++.+|.+++..-..|.++.+|+.|+|++|++.
T Consensus       318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~  396 (1081)
T KOG0618|consen  318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN  396 (1081)
T ss_pred             hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence            999987 77776554   24666666666665432111 11234777777777777666666677777777777777776


Q ss_pred             CCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCC
Q 045837          256 GCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIP  335 (527)
Q Consensus       256 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  335 (527)
                      ..-...+.++..|++|+||||+++ .++..+..+..|++|...+|+|.. .| .+..++.|+.+|++.|+|+...-..-.
T Consensus       397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~  473 (1081)
T KOG0618|consen  397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEAL  473 (1081)
T ss_pred             cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch-hhhhcCcceEEecccchhhhhhhhhhC
Confidence            444445666777777777777776 555666666667777666666663 33 566666667777777666654332223


Q ss_pred             CCCCCceecCCCCC
Q 045837          336 GSKEGGVFDDTSNC  349 (527)
Q Consensus       336 ~l~~L~~L~l~~N~  349 (527)
                      .+++|++||++||.
T Consensus       474 p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  474 PSPNLKYLDLSGNT  487 (1081)
T ss_pred             CCcccceeeccCCc
Confidence            33666666666665

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.79  E-value=4.1e-21  Score=183.73  Aligned_cols=249  Identities=17%  Similarity=0.271  Sum_probs=196.0

Q ss_pred             CCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEeccc-CCCCCCcchhhhc--cccchh
Q 045837          124 SDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRY-NNFEGEVPRELFK--MKLDAI  200 (527)
Q Consensus       124 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~p~~~~~--~~L~~L  200 (527)
                      ..-.+|+|..|.|+.+-+.+|..+++|+.|||++|+|+.+-++.|.++.+|..|-+.+ |+|+ .++...|.  ..|+.|
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence            3567899999999999999999999999999999999999999999999988777666 9998 88887777  689999


Q ss_pred             hccccccccccccccCC-CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCC------------CCChhhccCCCC
Q 045837          201 FLNNNRFSSWIPETIGE-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLM------------GCLPSEIGWLKK  267 (527)
Q Consensus       201 ~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~------------~~~p~~~~~l~~  267 (527)
                      .+.-|++.-.....+.. .++..|.+..|.+......+|..+.+++.+.+..|.+-            ...+..+++..-
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc  225 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC  225 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence            99999998776666654 45888999999999666668999999999998888722            111222222211


Q ss_pred             ----------------------CCEE---EccCCcccccCC-cccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEe
Q 045837          268 ----------------------LTVF---DASSNSFYGSVP-QSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTF  321 (527)
Q Consensus       268 ----------------------L~~L---~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  321 (527)
                                            ++.+   -.+.+...++.| ..|..+.+|+.|+|++|+|+++...+|.++.++++|.|
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L  305 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL  305 (498)
T ss_pred             cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence                                  1111   112222222333 24788999999999999999999999999999999999


Q ss_pred             cCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCCCCCC----cccccccCCCCCC
Q 045837          322 SYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWAT----TCSPVVSNPVDCS  373 (527)
Q Consensus       322 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~----~~~~~~~np~~C~  373 (527)
                      ..|+|.......|.++..|+.|+|.+|+|+......+..    ....+.+|||.|+
T Consensus       306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn  361 (498)
T KOG4237|consen  306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN  361 (498)
T ss_pred             CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence            999999888888999999999999999999654333332    3345679999997

>PLN03210 Resistant to P

Probab=99.77  E-value=1e-17  Score=193.20  Aligned_cols=240  Identities=17%  Similarity=0.168  Sum_probs=141.9

Q ss_pred             CcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEE
Q 045837           98 NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYL  177 (527)
Q Consensus        98 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  177 (527)
                      ...+|+.|+|.++.+.. +...+..+.+|++|+|++++..+.++ .++.+.+|++|+|++|.....++..+..+.+|++|
T Consensus       609 ~~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L  686 (1153)
T PLN03210        609 RPENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL  686 (1153)
T ss_pred             CccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence            45678888888887764 45566778888888888775544555 37778888888888876655777777788888888


Q ss_pred             ecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCC-------------------
Q 045837          178 DLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSI-------------------  238 (527)
Q Consensus       178 ~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-------------------  238 (527)
                      ++++|...+.++..+...+|+.|+|++|.....++..  ..+|++|+|++|.+.. ++..+                   
T Consensus       687 ~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~  763 (1153)
T PLN03210        687 DMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLW  763 (1153)
T ss_pred             eCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCcccc-ccccccccccccccccccchhhcc
Confidence            8887654446666554466777777776543333321  1235555555555432 11110                   


Q ss_pred             -----------CCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcch
Q 045837          239 -----------GNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVS  307 (527)
Q Consensus       239 -----------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~  307 (527)
                                 ....+|++|+|++|...+.+|..++++++|+.|+|++|...+.++..+ .+.+|++|+|++|.....++
T Consensus       764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p  842 (1153)
T PLN03210        764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP  842 (1153)
T ss_pred             ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc
Confidence                       012356666666665555666667777777777777664333455443 45556666665553322222


Q ss_pred             hhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCC
Q 045837          308 EQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTS  347 (527)
Q Consensus       308 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~  347 (527)
                      ..   ..+|++|+|++|.++.+ +..+..+.+|+.|++++
T Consensus       843 ~~---~~nL~~L~Ls~n~i~~i-P~si~~l~~L~~L~L~~  878 (1153)
T PLN03210        843 DI---STNISDLNLSRTGIEEV-PWWIEKFSNLSFLDMNG  878 (1153)
T ss_pred             cc---ccccCEeECCCCCCccC-hHHHhcCCCCCEEECCC
Confidence            21   23455555555555432 33444555555555554

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=1.6e-18  Score=187.92  Aligned_cols=227  Identities=22%  Similarity=0.371  Sum_probs=133.8

Q ss_pred             ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837          100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL  179 (527)
Q Consensus       100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  179 (527)
                      .+.+.|+|++++++. +|..+.  .+|+.|+|++|+|+. ++..+.  .+|++|+|++|+++ .++..+.  .+|+.|+|
T Consensus       178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence            345677777777765 344342  467777777777774 333332  46777777777776 3444432  46777777


Q ss_pred             ccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCCh
Q 045837          180 RYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLP  259 (527)
Q Consensus       180 s~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  259 (527)
                      ++|.+. .++..+. .+|+.|+|++|+++. ++..+. .+|++|++++|++.+ ++..+.  .+|++|++++|.++ .++
T Consensus       249 s~N~L~-~LP~~l~-s~L~~L~Ls~N~L~~-LP~~l~-~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP  320 (754)
T PRK15370        249 SINRIT-ELPERLP-SALQSLDLFHNKISC-LPENLP-EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALP  320 (754)
T ss_pred             cCCccC-cCChhHh-CCCCEEECcCCccCc-cccccC-CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCC
Confidence            777776 5665443 467777777777764 333332 357777777777764 333332  35666777777666 344


Q ss_pred             hhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCC
Q 045837          260 SEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKE  339 (527)
Q Consensus       260 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  339 (527)
                      ..+  ..+|++|++++|.+++ ++..+.  .+|+.|+|++|+|+. ++..+.  .+|++|+|++|+|+.+.. .+.  ..
T Consensus       321 ~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~lp--~~L~~LdLs~N~Lt~LP~-~l~--~s  389 (754)
T PRK15370        321 ETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETLP--PTITTLDVSRNALTNLPE-NLP--AA  389 (754)
T ss_pred             ccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhhc--CCcCEEECCCCcCCCCCH-hHH--HH
Confidence            332  2466666777766663 444432  466667777766663 343332  356667777766665432 222  24


Q ss_pred             CceecCCCCCCCCCC
Q 045837          340 GGVFDDTSNCLAQRP  354 (527)
Q Consensus       340 L~~L~l~~N~l~~~~  354 (527)
                      |+.|++++|.|+.++
T Consensus       390 L~~LdLs~N~L~~LP  404 (754)
T PRK15370        390 LQIMQASRNNLVRLP  404 (754)
T ss_pred             HHHHhhccCCcccCc
Confidence            666666666666554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.76  E-value=6.5e-18  Score=182.16  Aligned_cols=218  Identities=20%  Similarity=0.241  Sum_probs=100.4

Q ss_pred             EEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccc-------------
Q 045837          103 AGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCL-------------  169 (527)
Q Consensus       103 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-------------  169 (527)
                      ..|+|++++++. +|..+.  .+|+.|++.+|+|+. ++.   ...+|++|+|++|+|+ .++..+.             
T Consensus       204 ~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~lp~sL~~L~Ls~N~L~  275 (788)
T PRK15387        204 AVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLT  275 (788)
T ss_pred             cEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCcccccceeeccCCchh
Confidence            345666665553 444443  245555665555553 221   1345555555555555 2222110             


Q ss_pred             ----cCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCc
Q 045837          170 ----SWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVN  245 (527)
Q Consensus       170 ----~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~  245 (527)
                          ...+|+.|+|++|+++ .++..  ..+|+.|+|++|++++. +..  ..+|+.|++++|++.+ ++..   ..+|+
T Consensus       276 ~Lp~lp~~L~~L~Ls~N~Lt-~LP~~--p~~L~~LdLS~N~L~~L-p~l--p~~L~~L~Ls~N~L~~-LP~l---p~~Lq  345 (788)
T PRK15387        276 HLPALPSGLCKLWIFGNQLT-SLPVL--PPGLQELSVSDNQLASL-PAL--PSELCKLWAYNNQLTS-LPTL---PSGLQ  345 (788)
T ss_pred             hhhhchhhcCEEECcCCccc-ccccc--ccccceeECCCCccccC-CCC--cccccccccccCcccc-cccc---ccccc
Confidence                0133444555555554 33321  13566666666665542 111  1124444444444442 2211   13566


Q ss_pred             EEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcc
Q 045837          246 EIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNY  325 (527)
Q Consensus       246 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~  325 (527)
                      +|+|++|+|+ .+|..   ..+|+.|++++|+|+ .++..   ..+|+.|+|++|+|+++ +..   ..+|+.|++++|+
T Consensus       346 ~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~L-P~l---~s~L~~LdLS~N~  413 (788)
T PRK15387        346 ELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSL-PVL---PSELKELMVSGNR  413 (788)
T ss_pred             eEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccCC-CCc---ccCCCEEEccCCc
Confidence            6777777666 34432   234455555555554 23322   13455666666655532 221   2345555555555


Q ss_pred             cCCCCCCCCCCCCCCceecCCCCCCCCCC
Q 045837          326 FQGLGNECIPGSKEGGVFDDTSNCLAQRP  354 (527)
Q Consensus       326 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  354 (527)
                      |+++ +..   ..+|+.|++++|+|+.++
T Consensus       414 LssI-P~l---~~~L~~L~Ls~NqLt~LP  438 (788)
T PRK15387        414 LTSL-PML---PSGLLSLSVYRNQLTRLP  438 (788)
T ss_pred             CCCC-Ccc---hhhhhhhhhccCcccccC
Confidence            5543 221   123445555555555544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=3.3e-18  Score=185.47  Aligned_cols=228  Identities=22%  Similarity=0.355  Sum_probs=178.3

Q ss_pred             ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837          100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL  179 (527)
Q Consensus       100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  179 (527)
                      .+|+.|+|++|+++. ++..+.  .+|++|+|++|+|+. ++..+.  .+|++|+|++|++. .++..+.  .+|++|+|
T Consensus       199 ~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L  269 (754)
T PRK15370        199 EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL  269 (754)
T ss_pred             cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence            478999999999986 454443  589999999999984 454443  47999999999998 5666554  58999999


Q ss_pred             ccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCCh
Q 045837          180 RYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLP  259 (527)
Q Consensus       180 s~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  259 (527)
                      ++|+++ .++..+. .+|+.|+|++|+++.. +..+. .+|++|++++|++.. ++..+.  .+|++|++++|.++ .++
T Consensus       270 s~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt~L-P~~lp-~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt-~LP  341 (754)
T PRK15370        270 FHNKIS-CLPENLP-EELRYLSVYDNSIRTL-PAHLP-SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALT-SLP  341 (754)
T ss_pred             cCCccC-ccccccC-CCCcEEECCCCccccC-cccch-hhHHHHHhcCCcccc-CCcccc--ccceeccccCCccc-cCC
Confidence            999998 6776554 5899999999999864 33222 368999999999985 444333  58999999999998 466


Q ss_pred             hhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCC---CCCCCC
Q 045837          260 SEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLG---NECIPG  336 (527)
Q Consensus       260 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~---~~~~~~  336 (527)
                      ..+  ..+|+.|+|++|+|+ .++..+.  .+|++|+|++|+|+++ +..+..  .|+.|++++|+|+++.   +.++..
T Consensus       342 ~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~L-P~~l~~--sL~~LdLs~N~L~~LP~sl~~~~~~  413 (754)
T PRK15370        342 ASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNL-PENLPA--ALQIMQASRNNLVRLPESLPHFRGE  413 (754)
T ss_pred             hhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCC-CHhHHH--HHHHHhhccCCcccCchhHHHHhhc
Confidence            655  379999999999998 5666553  6899999999999954 544543  6899999999998652   223445


Q ss_pred             CCCCceecCCCCCCCC
Q 045837          337 SKEGGVFDDTSNCLAQ  352 (527)
Q Consensus       337 l~~L~~L~l~~N~l~~  352 (527)
                      +..+..|++.+|.|+.
T Consensus       414 ~~~l~~L~L~~Npls~  429 (754)
T PRK15370        414 GPQPTRIIVEYNPFSE  429 (754)
T ss_pred             CCCccEEEeeCCCccH
Confidence            5788999999999973

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=2.1e-19  Score=179.69  Aligned_cols=86  Identities=21%  Similarity=0.155  Sum_probs=43.8

Q ss_pred             ceEEEEEcCCCCcCCC----CccccCCCCCCCEEEccCCcccc------cccccccCCCCCcEEEeecCcCcccCCcccc
Q 045837          100 TVVAGIDLNGNDIAGY----FPAELGWLSDLALFHVNSNRFCG------IIPESLSNWKLIYEFDVSNNRLVGSFPNVCL  169 (527)
Q Consensus       100 ~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  169 (527)
                      ..|+.|+|+++.++..    +...+...++|++|+++++.+.+      .+...+..+.+|++|+|++|.+.+.....+.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            4466666666665332    22334445556666666655541      1223444555666666666665533333333


Q ss_pred             cCCc---ccEEecccCCCC
Q 045837          170 SWTS---LRYLDLRYNNFE  185 (527)
Q Consensus       170 ~l~~---L~~L~Ls~n~i~  185 (527)
                      .+.+   |++|++++|.++
T Consensus       103 ~l~~~~~L~~L~ls~~~~~  121 (319)
T cd00116         103 SLLRSSSLQELKLNNNGLG  121 (319)
T ss_pred             HHhccCcccEEEeeCCccc
Confidence            3333   666666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=2.4e-19  Score=179.34  Aligned_cols=250  Identities=18%  Similarity=0.178  Sum_probs=147.2

Q ss_pred             EEEcCCCCcCC-CCccccCCCCCCCEEEccCCccccc----ccccccCCCCCcEEEeecCcCcc------cCCcccccCC
Q 045837          104 GIDLNGNDIAG-YFPAELGWLSDLALFHVNSNRFCGI----IPESLSNWKLIYEFDVSNNRLVG------SFPNVCLSWT  172 (527)
Q Consensus       104 ~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~  172 (527)
                      .|+|.++.+.+ .....+..+.+|++|+++++.++..    +...+...++|++|+++++.+.+      .+...+..+.
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            35566666542 2233445566677777777777432    33445566667777777776651      1223455566


Q ss_pred             cccEEecccCCCCCCcchhhhc-cc---cchhhcccccccccccc----ccC-C-CCcceEeccCCcCCcc----CCCCC
Q 045837          173 SLRYLDLRYNNFEGEVPRELFK-MK---LDAIFLNNNRFSSWIPE----TIG-E-STVSVVTFAHNNFSGC----VPRSI  238 (527)
Q Consensus       173 ~L~~L~Ls~n~i~~~~p~~~~~-~~---L~~L~L~~n~l~~~~~~----~~~-~-~~L~~L~L~~n~l~~~----~~~~l  238 (527)
                      +|++|+|++|.+.+.....+.. .+   |++|++++|++.+....    .+. . .+|++|++++|.+++.    +...+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            7777777777776434333332 23   77777777777632111    111 2 4677777777777732    22334


Q ss_pred             CCCCCCcEEEcccCCCCCC----ChhhccCCCCCCEEEccCCccccc----CCcccCCCCCCcEEeccCCCCCCcchhhh
Q 045837          239 GNMPNVNEIILSNNDLMGC----LPSEIGWLKKLTVFDASSNSFYGS----VPQSFSSLESIHRLVLSYNQLTGYVSEQI  310 (527)
Q Consensus       239 ~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l  310 (527)
                      ..+.+|++|+|++|.+++.    +...+..+.+|++|+|++|.+++.    +...+..+++|++|++++|.+++.....+
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l  241 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL  241 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence            5556777777777777642    223344556777777777776532    22345566777778887777775322222


Q ss_pred             hC-----CCCCcEEEecCcccCCC----CCCCCCCCCCCceecCCCCCCCCC
Q 045837          311 CK-----LPNINNFTFSYNYFQGL----GNECIPGSKEGGVFDDTSNCLAQR  353 (527)
Q Consensus       311 ~~-----l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~  353 (527)
                      ..     ...|++|++++|.+++.    ....+..+.+|++|++++|.++..
T Consensus       242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            21     35777777777777622    112344556777777877777744

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.73  E-value=1e-16  Score=184.92  Aligned_cols=242  Identities=13%  Similarity=0.108  Sum_probs=166.6

Q ss_pred             EEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEeccc
Q 045837          102 VAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRY  181 (527)
Q Consensus       102 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  181 (527)
                      |+.|++.++.+.. ++..| .+.+|++|+|.+|++. .++..+..+.+|++|+|+++.....++ .+..+.+|+.|+|++
T Consensus       591 Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~  666 (1153)
T PLN03210        591 LRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSD  666 (1153)
T ss_pred             cEEEEecCCCCCC-CCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecC
Confidence            4444444443322 23333 3467777777777776 345556777788888887765443444 366677888888887


Q ss_pred             CCCCCCcchhhhc-cccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChh
Q 045837          182 NNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPS  260 (527)
Q Consensus       182 n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~  260 (527)
                      |.....++..+.. .+|+.|++++|.....++..+...+|++|+|++|.....++..   ..+|++|+|++|.+. .++.
T Consensus       667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~  742 (1153)
T PLN03210        667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPS  742 (1153)
T ss_pred             CCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccc
Confidence            7655567766655 5788888887765555555555567888888887655554432   357888888888876 4443


Q ss_pred             hc------------------------------cCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhh
Q 045837          261 EI------------------------------GWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQI  310 (527)
Q Consensus       261 ~~------------------------------~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l  310 (527)
                      .+                              ....+|+.|+|++|...+.+|..++++.+|+.|+|++|...+.++..+
T Consensus       743 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~  822 (1153)
T PLN03210        743 NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI  822 (1153)
T ss_pred             cccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC
Confidence            21                              112478889999998777899999999999999999986555666555


Q ss_pred             hCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCC
Q 045837          311 CKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPS  355 (527)
Q Consensus       311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  355 (527)
                       ++.+|++|+|++|......+.   ...+|+.|++++|.|..++.
T Consensus       823 -~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~~iP~  863 (1153)
T PLN03210        823 -NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIEEVPW  863 (1153)
T ss_pred             -CccccCEEECCCCCccccccc---cccccCEeECCCCCCccChH
Confidence             789999999999865443332   23689999999999997764

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.73  E-value=1.6e-19  Score=189.27  Aligned_cols=246  Identities=21%  Similarity=0.279  Sum_probs=197.2

Q ss_pred             CCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCc-cc
Q 045837           97 SNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTS-LR  175 (527)
Q Consensus        97 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~  175 (527)
                      ..+.+|+.|++.+|.++. ++..+..+++|++|++..|.+. .++....+++.|++|+|..|+|.......|..+.. |+
T Consensus       261 ~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~  338 (1081)
T KOG0618|consen  261 GACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLN  338 (1081)
T ss_pred             HhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHH
Confidence            356799999999999954 6778888999999999999998 45556788999999999999998443333333333 78


Q ss_pred             EEecccCCCCCCcchhhh--ccccchhhcccccccccccccc-CCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccC
Q 045837          176 YLDLRYNNFEGEVPRELF--KMKLDAIFLNNNRFSSWIPETI-GESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNN  252 (527)
Q Consensus       176 ~L~Ls~n~i~~~~p~~~~--~~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N  252 (527)
                      .|+.+.|++. ..+..-.  ...|+.|.+.+|.+++.....+ +..+|+.|+|++|++...-...+.++..|++|+||+|
T Consensus       339 ~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN  417 (1081)
T KOG0618|consen  339 TLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN  417 (1081)
T ss_pred             HHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc
Confidence            8888888887 4442211  1589999999999987654444 5678999999999999776677899999999999999


Q ss_pred             CCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCC
Q 045837          253 DLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNE  332 (527)
Q Consensus       253 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~  332 (527)
                      +++ .++..+.++..|++|...+|++. .+| .+..+..|+.+||+.|+|+...-......++|++|||++|......-.
T Consensus       418 kL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~  494 (1081)
T KOG0618|consen  418 KLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHK  494 (1081)
T ss_pred             hhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchh
Confidence            999 89999999999999999999998 777 788899999999999999865444333447999999999986544445


Q ss_pred             CCCCCCCCceecCCCC
Q 045837          333 CIPGSKEGGVFDDTSN  348 (527)
Q Consensus       333 ~~~~l~~L~~L~l~~N  348 (527)
                      .|..+..+...+++-|
T Consensus       495 ~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  495 TLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhHHhhhhhheecccC
Confidence            5666666666666555

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.69  E-value=9.7e-17  Score=173.16  Aligned_cols=222  Identities=19%  Similarity=0.259  Sum_probs=156.8

Q ss_pred             eEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCccccccccccc-----------------CCCCCcEEEeecCcCccc
Q 045837          101 VVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLS-----------------NWKLIYEFDVSNNRLVGS  163 (527)
Q Consensus       101 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~-----------------~l~~L~~L~Ls~n~l~~~  163 (527)
                      +|+.|+|.+|+++. ++.   .+.+|++|+|++|+|+.+ +..+.                 ...+|+.|+|++|+++ .
T Consensus       223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsL-P~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-~  296 (788)
T PRK15387        223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSL-PVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-S  296 (788)
T ss_pred             CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcc-cCcccccceeeccCCchhhhhhchhhcCEEECcCCccc-c
Confidence            45666666666654 222   235566666666666532 21111                 1134566666666666 2


Q ss_pred             CCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCC
Q 045837          164 FPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPN  243 (527)
Q Consensus       164 ~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~  243 (527)
                      ++.   .+.+|++|+|++|+|+ .++..  ..+|+.|++++|.+++. +..  ..+|++|+|++|+|.+ ++..   ..+
T Consensus       297 LP~---~p~~L~~LdLS~N~L~-~Lp~l--p~~L~~L~Ls~N~L~~L-P~l--p~~Lq~LdLS~N~Ls~-LP~l---p~~  363 (788)
T PRK15387        297 LPV---LPPGLQELSVSDNQLA-SLPAL--PSELCKLWAYNNQLTSL-PTL--PSGLQELSVSDNQLAS-LPTL---PSE  363 (788)
T ss_pred             ccc---cccccceeECCCCccc-cCCCC--cccccccccccCccccc-ccc--ccccceEecCCCccCC-CCCC---Ccc
Confidence            332   2368999999999998 45542  24688999999999863 321  2469999999999995 4433   347


Q ss_pred             CcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecC
Q 045837          244 VNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSY  323 (527)
Q Consensus       244 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~  323 (527)
                      |+.|++++|.|+ .++..   ..+|+.|+|++|+|++ ++..   ..+|+.|+|++|+|++ ++..+   .+|+.|++++
T Consensus       364 L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~  431 (788)
T PRK15387        364 LYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYR  431 (788)
T ss_pred             cceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhcc
Confidence            888999999998 46643   3579999999999984 5543   3589999999999986 44433   4688899999


Q ss_pred             cccCCCCCCCCCCCCCCceecCCCCCCCCCC
Q 045837          324 NYFQGLGNECIPGSKEGGVFDDTSNCLAQRP  354 (527)
Q Consensus       324 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  354 (527)
                      |+|+.+ +..+.++.+|+.|++++|.|++..
T Consensus       432 NqLt~L-P~sl~~L~~L~~LdLs~N~Ls~~~  461 (788)
T PRK15387        432 NQLTRL-PESLIHLSSETTVNLEGNPLSERT  461 (788)
T ss_pred             Cccccc-ChHHhhccCCCeEECCCCCCCchH
Confidence            999864 777889999999999999998653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=7e-19  Score=150.34  Aligned_cols=162  Identities=27%  Similarity=0.507  Sum_probs=102.0

Q ss_pred             CcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEE
Q 045837           98 NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYL  177 (527)
Q Consensus        98 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  177 (527)
                      ++.+++.|.|++|.++. ++..+.++.+|+.|++.+|+|. .++..++.+++|+.|++.-|++. .++..|+.++.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            45677777788887765 4456777777888888777777 55667777777777777777776 677777777777777


Q ss_pred             ecccCCCCC-CcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCC
Q 045837          178 DLRYNNFEG-EVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMG  256 (527)
Q Consensus       178 ~Ls~n~i~~-~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  256 (527)
                      ||.+|++.. .+|..+|.                      ...|+.|+|+.|.+. .++..++++++|+.|.+++|++- 
T Consensus       108 dltynnl~e~~lpgnff~----------------------m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-  163 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFY----------------------MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-  163 (264)
T ss_pred             hccccccccccCCcchhH----------------------HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-
Confidence            777777642 22322222                      122333333333333 44555666666666666666665 


Q ss_pred             CChhhccCCCCCCEEEccCCcccccCCcccC
Q 045837          257 CLPSEIGWLKKLTVFDASSNSFYGSVPQSFS  287 (527)
Q Consensus       257 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  287 (527)
                      .+|..++.+..|++|++.+|+++ .+|..++
T Consensus       164 ~lpkeig~lt~lrelhiqgnrl~-vlppel~  193 (264)
T KOG0617|consen  164 SLPKEIGDLTRLRELHIQGNRLT-VLPPELA  193 (264)
T ss_pred             hCcHHHHHHHHHHHHhcccceee-ecChhhh
Confidence            56666666666666666666665 4444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=7.1e-19  Score=150.30  Aligned_cols=182  Identities=21%  Similarity=0.374  Sum_probs=149.4

Q ss_pred             ccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhc-ccc
Q 045837          119 ELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK-MKL  197 (527)
Q Consensus       119 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~-~~L  197 (527)
                      .+.++.+++.|.|++|+++. ++..+..+.+|+.|++++|+|. .++..+..+.+|+.|+++.|++. .+|..++. ..|
T Consensus        28 gLf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             cccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence            45577889999999999994 5557899999999999999998 78889999999999999999997 77777766 566


Q ss_pred             chhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCc
Q 045837          198 DAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNS  277 (527)
Q Consensus       198 ~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~  277 (527)
                      +.|+|.+|.+..                      ..++..|..+..|+-|+|++|++. .+|.+++++++|+.|.+.+|.
T Consensus       105 evldltynnl~e----------------------~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdnd  161 (264)
T KOG0617|consen  105 EVLDLTYNNLNE----------------------NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDND  161 (264)
T ss_pred             hhhhcccccccc----------------------ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCc
Confidence            777776665543                      246677888999999999999998 999999999999999999999


Q ss_pred             ccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCC---CcEEEecCcccCC
Q 045837          278 FYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPN---INNFTFSYNYFQG  328 (527)
Q Consensus       278 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~---L~~L~Ls~N~l~~  328 (527)
                      +. .+|..++.+..|++|++.+|+++ .++..++.+.-   -+++.+.+|-+..
T Consensus       162 ll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~  213 (264)
T KOG0617|consen  162 LL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVN  213 (264)
T ss_pred             hh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence            87 78999999999999999999998 44555554322   2344555665543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.42  E-value=1.6e-14  Score=137.20  Aligned_cols=245  Identities=18%  Similarity=0.184  Sum_probs=154.9

Q ss_pred             CcceEEEEEcCCCCcCCC----CccccCCCCCCCEEEccCC---ccccccc-------ccccCCCCCcEEEeecCcCccc
Q 045837           98 NITVVAGIDLNGNDIAGY----FPAELGWLSDLALFHVNSN---RFCGIIP-------ESLSNWKLIYEFDVSNNRLVGS  163 (527)
Q Consensus        98 ~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n---~i~~~~~-------~~~~~l~~L~~L~Ls~n~l~~~  163 (527)
                      .+..++.|+|++|.|...    +-..+.+.++|+..++++-   +....++       .++-++.+|++||||+|-|...
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            456788889998888543    3345667778888888763   2222222       2344456777777777776533


Q ss_pred             CCc----ccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccC----C
Q 045837          164 FPN----VCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCV----P  235 (527)
Q Consensus       164 ~~~----~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~----~  235 (527)
                      ...    .+.++..|++|+|.+|.+. ..........|..|.  .++..+      ...+|+.++..+|++....    .
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~--~~kk~~------~~~~Lrv~i~~rNrlen~ga~~~A  178 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELA--VNKKAA------SKPKLRVFICGRNRLENGGATALA  178 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHH--HHhccC------CCcceEEEEeeccccccccHHHHH
Confidence            322    2345667777777777765 322222222333333  221111      1245888888888877532    2


Q ss_pred             CCCCCCCCCcEEEcccCCCCCC----ChhhccCCCCCCEEEccCCccccc----CCcccCCCCCCcEEeccCCCCCCcch
Q 045837          236 RSIGNMPNVNEIILSNNDLMGC----LPSEIGWLKKLTVFDASSNSFYGS----VPQSFSSLESIHRLVLSYNQLTGYVS  307 (527)
Q Consensus       236 ~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~~  307 (527)
                      ..|.....|+++.+++|.|...    +...+..+++|+.|||.+|.++..    +...+..+++|+.|++++|.+.....
T Consensus       179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga  258 (382)
T KOG1909|consen  179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA  258 (382)
T ss_pred             HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccH
Confidence            2355567888888888887632    334567788888888888888632    23446667788888888888875433


Q ss_pred             hhh-----hCCCCCcEEEecCcccCCC----CCCCCCCCCCCceecCCCCCCC
Q 045837          308 EQI-----CKLPNINNFTFSYNYFQGL----GNECIPGSKEGGVFDDTSNCLA  351 (527)
Q Consensus       308 ~~l-----~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~  351 (527)
                      ..|     ...++|++|.|.+|.++..    +..++...+.|..|+|++|.+.
T Consensus       259 ~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  259 IAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            322     2467888888888888742    2345566778888888888884

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.42  E-value=3.9e-14  Score=131.69  Aligned_cols=133  Identities=21%  Similarity=0.234  Sum_probs=108.7

Q ss_pred             CcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEecc
Q 045837          219 TVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLS  298 (527)
Q Consensus       219 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  298 (527)
                      .|.+|+|++|.|+ ++..++.-++.++.|++|+|.|. .+. .+..+.+|+.|||++|.++ .+..+-..+.++++|.|+
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence            4888999999888 55667777789999999999998 333 3778899999999999998 445566778899999999


Q ss_pred             CCCCCCcchhhhhCCCCCcEEEecCcccCCCCC-CCCCCCCCCceecCCCCCCCCCCCCC
Q 045837          299 YNQLTGYVSEQICKLPNINNFTFSYNYFQGLGN-ECIPGSKEGGVFDDTSNCLAQRPSQK  357 (527)
Q Consensus       299 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~  357 (527)
                      +|.|...  ..+.++-+|..||+++|+|..... ..+++++.|+.+.|.+|.|..++.+.
T Consensus       361 ~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYR  418 (490)
T KOG1259|consen  361 QNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYR  418 (490)
T ss_pred             hhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHH
Confidence            9998753  457778889999999999986543 46888999999999999999877553

>PLN03150 hypothetical protein; Provisional

Probab=99.39  E-value=8.8e-13  Score=142.59  Aligned_cols=118  Identities=28%  Similarity=0.469  Sum_probs=103.0

Q ss_pred             CCCCCCCc----cccceeeCCCCCCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCc
Q 045837           76 NWVGTDVC----SYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIY  151 (527)
Q Consensus        76 ~w~~~~~c----~~~gv~c~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  151 (527)
                      +|.+..||    .|.|+.|.... ......++.|+|++|.+.+.++..+..+++|++|+|++|++.+.++..++++.+|+
T Consensus       391 ~W~g~~C~p~~~~w~Gv~C~~~~-~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~  469 (623)
T PLN03150        391 GWNGDPCVPQQHPWSGADCQFDS-TKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLE  469 (623)
T ss_pred             CCCCCCCCCcccccccceeeccC-CCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence            78764332    69999995321 11233699999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhc
Q 045837          152 EFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK  194 (527)
Q Consensus       152 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~  194 (527)
                      +|+|++|++++.++..+.++.+|++|+|++|.++|.+|..+..
T Consensus       470 ~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~  512 (623)
T PLN03150        470 VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG  512 (623)
T ss_pred             EEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence            9999999999999999999999999999999999999887654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.37  E-value=4.4e-14  Score=141.72  Aligned_cols=175  Identities=25%  Similarity=0.436  Sum_probs=133.6

Q ss_pred             CCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhh
Q 045837          122 WLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIF  201 (527)
Q Consensus       122 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~  201 (527)
                      .+..-...||+.|++. .++..+..+..|+.|.|++|.+. .++..+..+..|.+|||+.|+++ .++..++..-|+.|.
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli  149 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLI  149 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEE
Confidence            4555667888888887 56667777788888888888887 77778888888888888888888 888888888888888


Q ss_pred             ccccccccccccccC-CCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccc
Q 045837          202 LNNNRFSSWIPETIG-ESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYG  280 (527)
Q Consensus       202 L~~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  280 (527)
                      +++|+++.. +..++ ..+|.+|+.+.|.+. .++..++++.+|+.|.++.|++. .+|..+. .-.|..||++.|++. 
T Consensus       150 ~sNNkl~~l-p~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-  224 (722)
T KOG0532|consen  150 VSNNKLTSL-PEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-  224 (722)
T ss_pred             EecCccccC-CcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-
Confidence            888887763 33333 345777888888777 45566777778888888888877 6666666 445778888888887 


Q ss_pred             cCCcccCCCCCCcEEeccCCCCCC
Q 045837          281 SVPQSFSSLESIHRLVLSYNQLTG  304 (527)
Q Consensus       281 ~~p~~~~~l~~L~~L~Ls~N~l~~  304 (527)
                      .+|-.|.+|..|++|-|.+|-|..
T Consensus       225 ~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  225 YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             ecchhhhhhhhheeeeeccCCCCC
Confidence            677778888888888888888774

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.36  E-value=2.8e-14  Score=143.10  Aligned_cols=172  Identities=20%  Similarity=0.268  Sum_probs=110.6

Q ss_pred             ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837          100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL  179 (527)
Q Consensus       100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  179 (527)
                      ...+..||+.|++.. ++..+..+-.|+.|.|..|.|. .++..+.++..|.+|||+.|++. .++..++.| -|+.|-+
T Consensus        75 tdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~  150 (722)
T KOG0532|consen   75 TDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIV  150 (722)
T ss_pred             cchhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEE
Confidence            344556666666654 4556666666667777777666 55666677777777777777776 455555443 4667777


Q ss_pred             ccCCCCCCcchhhhc-cccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCC
Q 045837          180 RYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCL  258 (527)
Q Consensus       180 s~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~  258 (527)
                      ++|+++ .++..+.. .+|..|+.+.|.+........+..+|+.|.+..|++. .++.+++.| .|..||+|.|++. .+
T Consensus       151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~i  226 (722)
T KOG0532|consen  151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YL  226 (722)
T ss_pred             ecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ec
Confidence            777776 66665554 4667777777777665555555566777777777766 344555544 3666777777776 66


Q ss_pred             hhhccCCCCCCEEEccCCccc
Q 045837          259 PSEIGWLKKLTVFDASSNSFY  279 (527)
Q Consensus       259 p~~~~~l~~L~~L~Ls~n~l~  279 (527)
                      |..|..|+.|++|-|.+|-+.
T Consensus       227 Pv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  227 PVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             chhhhhhhhheeeeeccCCCC
Confidence            767777777777777777665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.31  E-value=2.4e-12  Score=132.79  Aligned_cols=175  Identities=26%  Similarity=0.347  Sum_probs=75.4

Q ss_pred             CCCcEEEeecCcCcccCCcccccCC-cccEEecccCCCCCCcchhhhc-cccchhhccccccccccccccCCCCcceEec
Q 045837          148 KLIYEFDVSNNRLVGSFPNVCLSWT-SLRYLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIGESTVSVVTF  225 (527)
Q Consensus       148 ~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L  225 (527)
                      ..++.|++.+|.++ .++.....+. +|+.|++++|.+. .++..+.. .+|+.|++++|++............|+.|++
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence            34444444444444 2222222232 4444444444444 33222222 3444444444444432222112333445555


Q ss_pred             cCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCc
Q 045837          226 AHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGY  305 (527)
Q Consensus       226 ~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  305 (527)
                      ++|++. .++..+....+|++|++++|.+. .....+.++.++..|.+.+|++. .+...++.+.+|++|++++|+++.+
T Consensus       194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i  270 (394)
T COG4886         194 SGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI  270 (394)
T ss_pred             cCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccc
Confidence            555544 22222233334555555555332 23334444555555555555544 2233444445555555555555533


Q ss_pred             chhhhhCCCCCcEEEecCcccCCC
Q 045837          306 VSEQICKLPNINNFTFSYNYFQGL  329 (527)
Q Consensus       306 ~~~~l~~l~~L~~L~Ls~N~l~~~  329 (527)
                      ..  +..+.+|++|++++|.+...
T Consensus       271 ~~--~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         271 SS--LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             cc--ccccCccCEEeccCcccccc
Confidence            22  44555555555555554433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.31  E-value=3.4e-12  Score=131.63  Aligned_cols=196  Identities=29%  Similarity=0.418  Sum_probs=128.8

Q ss_pred             EEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCC-CCcEEEeecCcCcccCCcccccCCcccEEecccC
Q 045837          104 GIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWK-LIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYN  182 (527)
Q Consensus       104 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  182 (527)
                      .+++..+.+...+ ..+..++.++.|++.+|.++.+ +.....+. +|++|++++|.+. .++..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            4666666653322 2344556777777777777733 33444453 7777777777776 33345666777777777777


Q ss_pred             CCCCCcchhh-hccccchhhccccccccccccccCC-CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChh
Q 045837          183 NFEGEVPREL-FKMKLDAIFLNNNRFSSWIPETIGE-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPS  260 (527)
Q Consensus       183 ~i~~~~p~~~-~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~  260 (527)
                      ++. .++... ....|+.|++++|++...- ..... ..|++|.+++|.+. .....+..+.++..|++.+|++. .+..
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~-~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~  249 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKISDLP-PEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE  249 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccccCc-hhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence            777 555555 4467777777777776632 32222 33777788777544 23345677777888888888776 4455


Q ss_pred             hccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchh
Q 045837          261 EIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSE  308 (527)
Q Consensus       261 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~  308 (527)
                      .++.+.+|++|++++|+++. +.. ++.+.+|+.|++++|.+....+.
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             hhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccchh
Confidence            67778888888888888873 333 77778888888888887765444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=1.2e-12  Score=127.79  Aligned_cols=206  Identities=18%  Similarity=0.204  Sum_probs=103.7

Q ss_pred             cCCCCCcEEEeecCcCcccCC-cccccCCcccEEecccCCCCCCcchh--hhc--cccchhhcccccccccccccc--CC
Q 045837          145 SNWKLIYEFDVSNNRLVGSFP-NVCLSWTSLRYLDLRYNNFEGEVPRE--LFK--MKLDAIFLNNNRFSSWIPETI--GE  217 (527)
Q Consensus       145 ~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~p~~--~~~--~~L~~L~L~~n~l~~~~~~~~--~~  217 (527)
                      +++.+|+++.|++..+..... .....|.+++.|||+.|-|. .+-..  +..  .+|+.|+|+.|++........  ..
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHH-hHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            345556666666655542211 23445566666666666554 22111  111  456666666666544322222  12


Q ss_pred             CCcceEeccCCcCCccC-CCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCC--cccCCCCCCcE
Q 045837          218 STVSVVTFAHNNFSGCV-PRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVP--QSFSSLESIHR  294 (527)
Q Consensus       218 ~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~  294 (527)
                      ..|+.|.|+.|+++... ...+..+++|+.|+|.+|.....-......++.|++|||++|++.. ++  ...+.++.|+.
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhh
Confidence            34666666666666421 1223445666667776664222223333445666667776666542 22  23445566666


Q ss_pred             EeccCCCCCCcch-hh-----hhCCCCCcEEEecCcccCCCCC-CCCCCCCCCceecCCCCCCCC
Q 045837          295 LVLSYNQLTGYVS-EQ-----ICKLPNINNFTFSYNYFQGLGN-ECIPGSKEGGVFDDTSNCLAQ  352 (527)
Q Consensus       295 L~Ls~N~l~~~~~-~~-----l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~  352 (527)
                      |+++.+.|.++.- +.     ...+.+|++|+++.|++.+... ..+..+.+|+.|.+..|.|+.
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            6666666654311 11     2345566667777766654321 223344555666666666653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=9.2e-13  Score=128.60  Aligned_cols=208  Identities=17%  Similarity=0.206  Sum_probs=105.9

Q ss_pred             CCCcceEEEEEcCCCCcCCCCc-cccCCCCCCCEEEccCCcccc--cccccccCCCCCcEEEeecCcCcccCCcc-cccC
Q 045837           96 NSNITVVAGIDLNGNDIAGYFP-AELGWLSDLALFHVNSNRFCG--IIPESLSNWKLIYEFDVSNNRLVGSFPNV-CLSW  171 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l  171 (527)
                      .+++++|+.+.|+++.+....- +....|.+++.|||+.|-|..  .+......|++|+.|+|+.|++....... -..+
T Consensus       117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            3456677777777766543221 244566777777777775542  12233456677777777777665222111 1134


Q ss_pred             CcccEEecccCCCCCCcchhhhc--cccchhhcccccccccccccc-CCCCcceEeccCCcCCccC-CCCCCCCCCCcEE
Q 045837          172 TSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETI-GESTVSVVTFAHNNFSGCV-PRSIGNMPNVNEI  247 (527)
Q Consensus       172 ~~L~~L~Ls~n~i~~~~p~~~~~--~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L  247 (527)
                      ..|+.|.|+.|.++..--..+..  .+|+.|+|.+|.......... -...|++|+|++|.+.+.. ....+.++.|+.|
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            66777777777665222122222  567777776664211111111 1234666666666665432 1234556666666


Q ss_pred             EcccCCCCCCChhh------ccCCCCCCEEEccCCccccc-CCcccCCCCCCcEEeccCCCCC
Q 045837          248 ILSNNDLMGCLPSE------IGWLKKLTVFDASSNSFYGS-VPQSFSSLESIHRLVLSYNQLT  303 (527)
Q Consensus       248 ~Ls~N~l~~~~p~~------~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~  303 (527)
                      +++.|.+.+.--..      ...+.+|++|++..|++... .-..+..+.+|+.|.+..|.|.
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            66666665321111      23345566666666665310 0012333445555555555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.18  E-value=4.1e-12  Score=118.33  Aligned_cols=113  Identities=22%  Similarity=0.154  Sum_probs=94.4

Q ss_pred             CCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCC
Q 045837          236 RSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPN  315 (527)
Q Consensus       236 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  315 (527)
                      ..+..+..|++||||+|.|+ .+-+++.-+..++.|++++|.|..+  ..+..+.+|+.|||++|.++. +..+-.++-+
T Consensus       278 ~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGN  353 (490)
T KOG1259|consen  278 VSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGN  353 (490)
T ss_pred             EecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcC
Confidence            34455678999999999998 7777888889999999999999843  348889999999999999984 4456667889


Q ss_pred             CcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCC
Q 045837          316 INNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRP  354 (527)
Q Consensus       316 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  354 (527)
                      +++|.|+.|.+..+  ..+..+-+|..||+++|+|..+.
T Consensus       354 IKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ld  390 (490)
T KOG1259|consen  354 IKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELD  390 (490)
T ss_pred             EeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHH
Confidence            99999999999765  34667788999999999998654

>PLN03150 hypothetical protein; Provisional

Probab=99.18  E-value=5e-11  Score=129.06  Aligned_cols=106  Identities=28%  Similarity=0.472  Sum_probs=73.5

Q ss_pred             CcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecC
Q 045837          244 VNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSY  323 (527)
Q Consensus       244 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~  323 (527)
                      ++.|+|++|.+.|.++..++.+++|+.|+|++|++.|.++..+..+.+|+.|+|++|+++|.+++.++++.+|++|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            56677777777777777777777777777777777777776677777777777777777777777777777777777777


Q ss_pred             cccCCCCCCCCCCC-CCCceecCCCCC
Q 045837          324 NYFQGLGNECIPGS-KEGGVFDDTSNC  349 (527)
Q Consensus       324 N~l~~~~~~~~~~l-~~L~~L~l~~N~  349 (527)
                      |++++.++..+... .++..+++.+|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            77777666655443 345566666664

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.15  E-value=3e-12  Score=132.47  Aligned_cols=241  Identities=18%  Similarity=0.155  Sum_probs=113.8

Q ss_pred             ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837          100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL  179 (527)
Q Consensus       100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  179 (527)
                      ..+..+.++.|.+.. +-..+..+++|++|++.+|+|..+.. .+..+.+|++|+|++|.|+.+  ..+..+..|+.|++
T Consensus        72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNL  147 (414)
T ss_pred             HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhhee
Confidence            444445555555543 22235555666666666666653321 144555666666666666533  23344455666666


Q ss_pred             ccCCCCCCcchhhhccccchhhcccccccccccc-ccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCC
Q 045837          180 RYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPE-TIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCL  258 (527)
Q Consensus       180 s~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~  258 (527)
                      ++|.|. .+...-....|+.+++++|++...-.. .....+++.+.+.+|.+...  ..+..+..+..+++..|.+...-
T Consensus       148 ~~N~i~-~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~  224 (414)
T KOG0531|consen  148 SGNLIS-DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLE  224 (414)
T ss_pred             ccCcch-hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceecc
Confidence            666655 333322234555555666555543221 12233455555555555422  12333334444455555554111


Q ss_pred             hhhccCCC--CCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCC---CC-
Q 045837          259 PSEIGWLK--KLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLG---NE-  332 (527)
Q Consensus       259 p~~~~~l~--~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~---~~-  332 (527)
                      .  +..+.  +|+.+++++|.+.. ++..+..+..+..|++.+|++...  ..+.....+..+.+.+|.+....   .. 
T Consensus       225 ~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (414)
T KOG0531|consen  225 G--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEY  299 (414)
T ss_pred             C--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccc
Confidence            1  11112  25666666666552 213444455566666666665543  22333444445555555544211   11 


Q ss_pred             CCCCCCCCceecCCCCCCCC
Q 045837          333 CIPGSKEGGVFDDTSNCLAQ  352 (527)
Q Consensus       333 ~~~~l~~L~~L~l~~N~l~~  352 (527)
                      .......+..+.+.+|.+..
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  300 ITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             cccccccccccccccCcccc
Confidence            12334455555555555543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.11  E-value=6.3e-12  Score=119.73  Aligned_cols=225  Identities=19%  Similarity=0.231  Sum_probs=158.3

Q ss_pred             cccCCCCCCCEEEccCCccccc----ccccccCCCCCcEEEeecCcC---cccCC-------cccccCCcccEEecccCC
Q 045837          118 AELGWLSDLALFHVNSNRFCGI----IPESLSNWKLIYEFDVSNNRL---VGSFP-------NVCLSWTSLRYLDLRYNN  183 (527)
Q Consensus       118 ~~l~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l---~~~~~-------~~~~~l~~L~~L~Ls~n~  183 (527)
                      ..+..+..+++|+|++|.|...    +...+.+.++|++.++++-..   ...++       ..+.++.+|++||||+|.
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            4566788999999999998743    445667778899998886421   11222       234456799999999999


Q ss_pred             CCCCcchhhhc-----cccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCC-
Q 045837          184 FEGEVPRELFK-----MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC-  257 (527)
Q Consensus       184 i~~~~p~~~~~-----~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-  257 (527)
                      |.-.....+..     ..|++|.|.+|.+.-.....++. .|.+|.  .+       .....-.+|+++....|++... 
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~-al~~l~--~~-------kk~~~~~~Lrv~i~~rNrlen~g  173 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR-ALFELA--VN-------KKAASKPKLRVFICGRNRLENGG  173 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH-HHHHHH--HH-------hccCCCcceEEEEeecccccccc
Confidence            97555544432     57888888888775432222111 123332  11       1233446899999999998743 


Q ss_pred             ---ChhhccCCCCCCEEEccCCccccc----CCcccCCCCCCcEEeccCCCCCCc----chhhhhCCCCCcEEEecCccc
Q 045837          258 ---LPSEIGWLKKLTVFDASSNSFYGS----VPQSFSSLESIHRLVLSYNQLTGY----VSEQICKLPNINNFTFSYNYF  326 (527)
Q Consensus       258 ---~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l  326 (527)
                         +...|.....|+.+.+..|.|...    +-..|..+++|+.|||.+|-++..    +...+..+++|++|+++++.+
T Consensus       174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll  253 (382)
T KOG1909|consen  174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL  253 (382)
T ss_pred             HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence               344577788999999999988522    234578899999999999999753    455677889999999999998


Q ss_pred             CCCCCCC-----CCCCCCCceecCCCCCCCC
Q 045837          327 QGLGNEC-----IPGSKEGGVFDDTSNCLAQ  352 (527)
Q Consensus       327 ~~~~~~~-----~~~l~~L~~L~l~~N~l~~  352 (527)
                      .......     -...++|++|++.+|.|+.
T Consensus       254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~  284 (382)
T KOG1909|consen  254 ENEGAIAFVDALKESAPSLEVLELAGNEITR  284 (382)
T ss_pred             ccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence            8643322     2346799999999999984

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.11  E-value=7.7e-11  Score=105.33  Aligned_cols=81  Identities=21%  Similarity=0.298  Sum_probs=20.6

Q ss_pred             cceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhc-cCCCCCCEEEccCCcccccC-CcccCCCCCCcEEec
Q 045837          220 VSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEI-GWLKKLTVFDASSNSFYGSV-PQSFSSLESIHRLVL  297 (527)
Q Consensus       220 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L  297 (527)
                      |+.|+|++|.|...  +.+..+.+|++|++++|.|+. +...+ ..+.+|++|+|++|+|.... -..+..+++|+.|+|
T Consensus        44 L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L  120 (175)
T PF14580_consen   44 LEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSL  120 (175)
T ss_dssp             --EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-
T ss_pred             CCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeec
Confidence            44444444444432  234444555555555555542 22122 23445555555555544211 022334445555555


Q ss_pred             cCCCCC
Q 045837          298 SYNQLT  303 (527)
Q Consensus       298 s~N~l~  303 (527)
                      .+|.++
T Consensus       121 ~~NPv~  126 (175)
T PF14580_consen  121 EGNPVC  126 (175)
T ss_dssp             TT-GGG
T ss_pred             cCCccc
Confidence            555443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.09  E-value=6.8e-12  Score=129.87  Aligned_cols=239  Identities=20%  Similarity=0.185  Sum_probs=149.9

Q ss_pred             ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837          100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL  179 (527)
Q Consensus       100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  179 (527)
                      ..++.++..++.+...--. ...+..++.+++..|.|.. +-..+..+.+|.+|++.+|.|... ...+..+.+|++|+|
T Consensus        49 ~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~l  125 (414)
T KOG0531|consen   49 SDLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDL  125 (414)
T ss_pred             chhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheec
Confidence            3445555555544332111 1456778888888888874 333578889999999999999844 233677899999999


Q ss_pred             ccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCC-CCCCCCCCCcEEEcccCCCCCCC
Q 045837          180 RYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVP-RSIGNMPNVNEIILSNNDLMGCL  258 (527)
Q Consensus       180 s~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~  258 (527)
                      ++|.|+ .+...-....|+.|++.+|.|...-. .-....|+.+++++|++...-. . +..+.+|+.+++.+|.+... 
T Consensus       126 s~N~I~-~i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i-  201 (414)
T KOG0531|consen  126 SFNKIT-KLEGLSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI-  201 (414)
T ss_pred             cccccc-cccchhhccchhhheeccCcchhccC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc-
Confidence            999998 44444344568888888888876321 1124457777777777775433 1 45667777777877777622 


Q ss_pred             hhhccCCCCCCEEEccCCcccccCCcccCCCCC--CcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCC
Q 045837          259 PSEIGWLKKLTVFDASSNSFYGSVPQSFSSLES--IHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPG  336 (527)
Q Consensus       259 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~--L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~  336 (527)
                       ..+..+..+..+++..|.++..-  .+..+..  |+.+++++|.+.... ..+..+..+..|++.+|++...  ..+..
T Consensus       202 -~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~--~~~~~  275 (414)
T KOG0531|consen  202 -EGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNL--EGLER  275 (414)
T ss_pred             -cchHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccCcccccc-ccccccccccccchhhcccccc--ccccc
Confidence             12334455555577777776322  2222222  777888888776431 4455666777777777777654  22344


Q ss_pred             CCCCceecCCCCCCC
Q 045837          337 SKEGGVFDDTSNCLA  351 (527)
Q Consensus       337 l~~L~~L~l~~N~l~  351 (527)
                      ...+..+...+|.+.
T Consensus       276 ~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  276 LPKLSELWLNDNKLA  290 (414)
T ss_pred             cchHHHhccCcchhc
Confidence            455555666666655

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.08  E-value=9.9e-11  Score=104.64  Aligned_cols=123  Identities=21%  Similarity=0.290  Sum_probs=42.1

Q ss_pred             CCcceEeccCCcCCccCCCCCC-CCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCccc-CCCCCCcEE
Q 045837          218 STVSVVTFAHNNFSGCVPRSIG-NMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSF-SSLESIHRL  295 (527)
Q Consensus       218 ~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L  295 (527)
                      .++++|+|.+|.|...  +.++ .+.+|++|+|++|.|+. +. .+..+.+|++|++++|.|+. +.+.+ ..+++|++|
T Consensus        19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQEL   93 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EE
T ss_pred             cccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEE
Confidence            4577788888877743  3454 46677888888887773 32 46667778888888887773 33333 346777888


Q ss_pred             eccCCCCCCcc-hhhhhCCCCCcEEEecCcccCCCCC---CCCCCCCCCceecC
Q 045837          296 VLSYNQLTGYV-SEQICKLPNINNFTFSYNYFQGLGN---ECIPGSKEGGVFDD  345 (527)
Q Consensus       296 ~Ls~N~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~l  345 (527)
                      +|++|+|.... -..+..+++|++|+|.+|.++....   ..+..+++|+.||-
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            88888776532 2456677777788888777764311   11345566666654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=99.03  E-value=3.6e-12  Score=131.27  Aligned_cols=131  Identities=24%  Similarity=0.244  Sum_probs=84.5

Q ss_pred             CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEec
Q 045837          218 STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVL  297 (527)
Q Consensus       218 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  297 (527)
                      .+|...++++|.+. .+...+.-+..|+.|+|++|+++.. . .+..+.+|++|||++|.++ .++..-..-.+|+.|+|
T Consensus       164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~l  239 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNL  239 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhhhheeeee
Confidence            34666777777766 3444566667778888888877733 2 5677777888888888776 34322111234777888


Q ss_pred             cCCCCCCcchhhhhCCCCCcEEEecCcccCCCCC-CCCCCCCCCceecCCCCCCCCCC
Q 045837          298 SYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGN-ECIPGSKEGGVFDDTSNCLAQRP  354 (527)
Q Consensus       298 s~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~  354 (527)
                      +||.++..  ..+.++.+|+.||+++|-|.+..- ..+..+..|+.|+|.||.+...+
T Consensus       240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            88877643  446677777788888887765321 12344556777788888777554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.86  E-value=2.1e-10  Score=105.73  Aligned_cols=245  Identities=17%  Similarity=0.144  Sum_probs=146.7

Q ss_pred             cceEEEEEcCCCCcCCCC----ccccCCCCCCCEEEccCCcc---ccc-------ccccccCCCCCcEEEeecCcCcccC
Q 045837           99 ITVVAGIDLNGNDIAGYF----PAELGWLSDLALFHVNSNRF---CGI-------IPESLSNWKLIYEFDVSNNRLVGSF  164 (527)
Q Consensus        99 ~~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~Ls~n~i---~~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~  164 (527)
                      +..++.++|++|.|...-    ...+.+-++|+..++++-..   ...       +-.++.+|+.|+..+||.|.|....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            567888888888886543    33455667788777776311   111       1224566778888888888776544


Q ss_pred             Cc----ccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCC----
Q 045837          165 PN----VCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPR----  236 (527)
Q Consensus       165 ~~----~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~----  236 (527)
                      +.    .+.+-..|++|.|++|.+. .+...-....|.+  |.+|+-.      -....|+.+++..|++..-.-.    
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~--la~nKKa------a~kp~Le~vicgrNRlengs~~~~a~  179 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFH--LAYNKKA------ADKPKLEVVICGRNRLENGSKELSAA  179 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHH--HHHHhhh------ccCCCceEEEeccchhccCcHHHHHH
Confidence            43    3445567888888887765 3322211112221  1222110      1224577777777777632111    


Q ss_pred             CCCCCCCCcEEEcccCCCCCCC-----hhhccCCCCCCEEEccCCcccccC----CcccCCCCCCcEEeccCCCCCCcch
Q 045837          237 SIGNMPNVNEIILSNNDLMGCL-----PSEIGWLKKLTVFDASSNSFYGSV----PQSFSSLESIHRLVLSYNQLTGYVS  307 (527)
Q Consensus       237 ~l~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~~~  307 (527)
                      .|..-.+|+++.+.+|.|.-.-     -..+..+++|+.|||++|.++...    ...++.+..|+.|.+..|-++....
T Consensus       180 ~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~  259 (388)
T COG5238         180 LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGV  259 (388)
T ss_pred             HHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccH
Confidence            1222257888888888886331     123445788999999999887322    2345566778899999888875433


Q ss_pred             hhh------hCCCCCcEEEecCcccCCCCCCC-------CCCCCCCceecCCCCCCCC
Q 045837          308 EQI------CKLPNINNFTFSYNYFQGLGNEC-------IPGSKEGGVFDDTSNCLAQ  352 (527)
Q Consensus       308 ~~l------~~l~~L~~L~Ls~N~l~~~~~~~-------~~~l~~L~~L~l~~N~l~~  352 (527)
                      ..+      ...++|+.|.+.||.+.+.+-..       -..++-|..|.+++|.|..
T Consensus       260 ~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         260 KSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             HHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            322      13577888889999776532211       1245667788889998874

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.82  E-value=3.5e-09  Score=77.82  Aligned_cols=60  Identities=35%  Similarity=0.543  Sum_probs=38.4

Q ss_pred             CCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCC
Q 045837          125 DLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNF  184 (527)
Q Consensus       125 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i  184 (527)
                      +|++|+|++|+|..+..+.|.++++|++|+|++|.++...++.|.++.+|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            456666666666655555666666666666666666655555666666666666666653

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.81  E-value=3.6e-09  Score=77.74  Aligned_cols=58  Identities=34%  Similarity=0.479  Sum_probs=27.9

Q ss_pred             CCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcc
Q 045837          268 LTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNY  325 (527)
Q Consensus       268 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~  325 (527)
                      |++|+|++|+++......|.++.+|++|+|++|.|+.+.++.|.++++|++|++++|+
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4444444444443333444444555555555555544444444555555555555544

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.79  E-value=3.7e-09  Score=117.24  Aligned_cols=246  Identities=13%  Similarity=0.107  Sum_probs=116.4

Q ss_pred             cceEEEEEcCCCC--cCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccE
Q 045837           99 ITVVAGIDLNGND--IAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRY  176 (527)
Q Consensus        99 ~~~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  176 (527)
                      +..|++|-+.+|.  +..+..+.|..++.|++|||++|.-.+.+|..+++|-+|++|+|++..+. .+|..+.+|.+|.+
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY  622 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence            3356566665554  33333334556666666666665555566666666666666666666666 55666666666666


Q ss_pred             EecccCCCCCCcchhhh-ccccchhhccccccccc--cccc-cCCCCcceEecc--------------------------
Q 045837          177 LDLRYNNFEGEVPRELF-KMKLDAIFLNNNRFSSW--IPET-IGESTVSVVTFA--------------------------  226 (527)
Q Consensus       177 L~Ls~n~i~~~~p~~~~-~~~L~~L~L~~n~l~~~--~~~~-~~~~~L~~L~L~--------------------------  226 (527)
                      |++..+.....++.... ..+|++|.+........  .-.. ....+|+.|...                          
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~  702 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIE  702 (889)
T ss_pred             eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhc
Confidence            66666554433333333 24555555544431110  0000 001112222221                          


Q ss_pred             CCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccC------CCCCCEEEccCCcccccCCcccCCCCCCcEEeccCC
Q 045837          227 HNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGW------LKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYN  300 (527)
Q Consensus       227 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  300 (527)
                      ++... .....+..+.+|+.|.+.++.+....-.....      +.+|..+.+.++..- ....+.....+|+.|++.++
T Consensus       703 ~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~  780 (889)
T KOG4658|consen  703 GCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSC  780 (889)
T ss_pred             ccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecc
Confidence            11111 22233455566666666666554221111110      111111112222111 11122223467888888777


Q ss_pred             CCCCcchhhhhCCCCCcEEEecCcccCCC-CCCCCCCCCCCceecCCC
Q 045837          301 QLTGYVSEQICKLPNINNFTFSYNYFQGL-GNECIPGSKEGGVFDDTS  347 (527)
Q Consensus       301 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~l~~  347 (527)
                      .....+......+..++++.+..+.+.+. .-....+++++..+.+.+
T Consensus       781 ~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~  828 (889)
T KOG4658|consen  781 RLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSF  828 (889)
T ss_pred             cccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCc
Confidence            66555555555555666666666666665 233344445444444443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.79  E-value=8.7e-11  Score=121.29  Aligned_cols=126  Identities=21%  Similarity=0.249  Sum_probs=62.5

Q ss_pred             ccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChh-hccCCCCCCEEEcc
Q 045837          196 KLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPS-EIGWLKKLTVFDAS  274 (527)
Q Consensus       196 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls  274 (527)
                      +|...++++|+++......--...++.|+|++|++....  .+..+.+|++|||++|.+. .++. ...+++ |+.|+|+
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeec
Confidence            445555555555432221112233555566666555432  4555566666666666665 3332 122233 6666666


Q ss_pred             CCcccccCCcccCCCCCCcEEeccCCCCCCcc-hhhhhCCCCCcEEEecCcccC
Q 045837          275 SNSFYGSVPQSFSSLESIHRLVLSYNQLTGYV-SEQICKLPNINNFTFSYNYFQ  327 (527)
Q Consensus       275 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~Ls~N~l~  327 (527)
                      +|.++..  ..+.++.+|+.|||++|.|.+.- ...+..+..|++|+|.+|-+.
T Consensus       241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            6665522  23455566666666666655431 122334445556666666543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.71  E-value=9.5e-10  Score=101.47  Aligned_cols=213  Identities=14%  Similarity=0.068  Sum_probs=124.5

Q ss_pred             CcceEEEEEcCCCCcCC---CCc-------cccCCCCCCCEEEccCCccccccc----ccccCCCCCcEEEeecCcCccc
Q 045837           98 NITVVAGIDLNGNDIAG---YFP-------AELGWLSDLALFHVNSNRFCGIIP----ESLSNWKLIYEFDVSNNRLVGS  163 (527)
Q Consensus        98 ~~~~L~~L~L~~n~l~~---~~~-------~~l~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~Ls~n~l~~~  163 (527)
                      +-++|+..++++-....   .+.       ..+-+|.+|+.++|++|.|....+    +.++.-..|++|.|++|.+.-.
T Consensus        56 ~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~  135 (388)
T COG5238          56 NVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPI  135 (388)
T ss_pred             hhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCcc
Confidence            45677888777643321   111       245678999999999999875544    3456778999999999987522


Q ss_pred             CCcccc-------------cCCcccEEecccCCCCCCcchhhhccccchhhcccccccccccccc-CCCCcceEeccCCc
Q 045837          164 FPNVCL-------------SWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETI-GESTVSVVTFAHNN  229 (527)
Q Consensus       164 ~~~~~~-------------~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~L~~n~  229 (527)
                      -...++             +-+.|+.+....|++. ..+......                  .+ ....|+++.+..|.
T Consensus       136 aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~------------------~l~sh~~lk~vki~qNg  196 (388)
T COG5238         136 AGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAA------------------LLESHENLKEVKIQQNG  196 (388)
T ss_pred             chhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHH------------------HHHhhcCceeEEeeecC
Confidence            222222             2244555555555554 222221110                  00 11235555555555


Q ss_pred             CCcc-----CCCCCCCCCCCcEEEcccCCCCCC----ChhhccCCCCCCEEEccCCcccccCCccc------CCCCCCcE
Q 045837          230 FSGC-----VPRSIGNMPNVNEIILSNNDLMGC----LPSEIGWLKKLTVFDASSNSFYGSVPQSF------SSLESIHR  294 (527)
Q Consensus       230 l~~~-----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~------~~l~~L~~  294 (527)
                      |.-.     +...+..+.+|+.|||.+|.++-.    +...+..+..|+.|.+.+|-++......+      ....+|..
T Consensus       197 Irpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~  276 (388)
T COG5238         197 IRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMP  276 (388)
T ss_pred             cCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccc
Confidence            5422     112345567888888888877622    33445566678888888887764332221      12467788


Q ss_pred             EeccCCCCCCcchhh-------hhCCCCCcEEEecCcccCCC
Q 045837          295 LVLSYNQLTGYVSEQ-------ICKLPNINNFTFSYNYFQGL  329 (527)
Q Consensus       295 L~Ls~N~l~~~~~~~-------l~~l~~L~~L~Ls~N~l~~~  329 (527)
                      |.+.+|.+.+.+-..       -..++-|..|.+++|+|...
T Consensus       277 L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~  318 (388)
T COG5238         277 LPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL  318 (388)
T ss_pred             cccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence            888888765432111       12455566677788887653

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.66  E-value=7e-09  Score=115.09  Aligned_cols=153  Identities=19%  Similarity=0.216  Sum_probs=113.7

Q ss_pred             CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCc--ccccccccccCCCCCcEEEeecCcCcccCCcccccCCc
Q 045837           96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNR--FCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTS  173 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  173 (527)
                      ......++++.+.+|.+.... ... +..+|+.|-+.+|.  +..+..+.|..++.|++|||++|.--+.+|..+++|-+
T Consensus       519 ~~~~~~~rr~s~~~~~~~~~~-~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~  596 (889)
T KOG4658|consen  519 VKSWNSVRRMSLMNNKIEHIA-GSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH  596 (889)
T ss_pred             ccchhheeEEEEeccchhhcc-CCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence            345567888888888876532 222 34479999999996  56555566889999999999998877799999999999


Q ss_pred             ccEEecccCCCCCCcchhhhc-cccchhhccccccccccccccC-CCCcceEeccCCcCC--ccCCCCCCCCCCCcEEEc
Q 045837          174 LRYLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIG-ESTVSVVTFAHNNFS--GCVPRSIGNMPNVNEIIL  249 (527)
Q Consensus       174 L~~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L  249 (527)
                      ||+|+|++..+. .+|..+.. .+|.+|++.++.....++.... ..+|++|.+......  ...-..+.++.+|+.|..
T Consensus       597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             hhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            999999999998 89998888 6899999999876555544444 677999988765422  222233455555555555


Q ss_pred             cc
Q 045837          250 SN  251 (527)
Q Consensus       250 s~  251 (527)
                      ..
T Consensus       676 ~~  677 (889)
T KOG4658|consen  676 TI  677 (889)
T ss_pred             ec
Confidence            33

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.58  E-value=1.6e-08  Score=94.71  Aligned_cols=107  Identities=17%  Similarity=0.183  Sum_probs=66.0

Q ss_pred             eEEEEEcCCCCcCCCCc-ccc-CCCCCCCEEEccCCcccc--cccccccCCCCCcEEEeecCcCcccCCcccccCCcccE
Q 045837          101 VVAGIDLNGNDIAGYFP-AEL-GWLSDLALFHVNSNRFCG--IIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRY  176 (527)
Q Consensus       101 ~L~~L~L~~n~l~~~~~-~~l-~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  176 (527)
                      .++.|.+.++.|...-. ..| ...+.+++|||.+|.|+.  .+...+.+++.|++|+|+.|.+...+-..-..+.+|+.
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            45566666666643211 122 245788889999988873  33444677888899999998887433222135678888


Q ss_pred             EecccCCCCCCcchhhhc--cccchhhcccccc
Q 045837          177 LDLRYNNFEGEVPRELFK--MKLDAIFLNNNRF  207 (527)
Q Consensus       177 L~Ls~n~i~~~~p~~~~~--~~L~~L~L~~n~l  207 (527)
                      |-|.+..+.-.-...+..  .++++|+++.|.+
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            888877765222222222  4667777777643

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=1.9e-09  Score=100.71  Aligned_cols=58  Identities=16%  Similarity=0.131  Sum_probs=31.2

Q ss_pred             CCCEEEccCCccccc-ccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccC
Q 045837          125 DLALFHVNSNRFCGI-IPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYN  182 (527)
Q Consensus       125 ~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  182 (527)
                      .|++|||++..|+.. +-..++.+.+|+.|.|.++++.+.+...+.+..+|+.|+|+.+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~  244 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC  244 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence            355666666555421 1122345556666666666665555555555556666666554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=4.7e-09  Score=98.19  Aligned_cols=196  Identities=16%  Similarity=0.083  Sum_probs=133.3

Q ss_pred             ceEEEEEcCCCCcCCC-CccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCc-Cccc-CCcccccCCcccE
Q 045837          100 TVVAGIDLNGNDIAGY-FPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNR-LVGS-FPNVCLSWTSLRY  176 (527)
Q Consensus       100 ~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~  176 (527)
                      .+|+.|||++..|+.. +-..+..+.+|+.|.|+++++...+...+..-.+|+.|+|+.+. ++.. ..-.+.+++.|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            4689999999888642 23356788999999999999999888899999999999999764 3311 1123567899999


Q ss_pred             EecccCCCCCCcchhhhc---cccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCC
Q 045837          177 LDLRYNNFEGEVPRELFK---MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNND  253 (527)
Q Consensus       177 L~Ls~n~i~~~~p~~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~  253 (527)
                      |+|+.+.+....-..+..   .+|+.|+|++++-.-      +          .+++.    .....+.+|.+|||++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl------~----------~sh~~----tL~~rcp~l~~LDLSD~v  324 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL------Q----------KSHLS----TLVRRCPNLVHLDLSDSV  324 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh------h----------hhHHH----HHHHhCCceeeecccccc
Confidence            999999876433111111   466777776654211      0          01111    113467889999999875


Q ss_pred             -CCCCChhhccCCCCCCEEEccCCcccccCCc---ccCCCCCCcEEeccCCCCCCcchhhhhCCCCCc
Q 045837          254 -LMGCLPSEIGWLKKLTVFDASSNSFYGSVPQ---SFSSLESIHRLVLSYNQLTGYVSEQICKLPNIN  317 (527)
Q Consensus       254 -l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~  317 (527)
                       ++......|.++..|++|.|+.|..  ++|+   .+...++|.+||+.++--.+...-....+++|+
T Consensus       325 ~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk  390 (419)
T KOG2120|consen  325 MLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK  390 (419)
T ss_pred             ccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence             5544555677889999999999864  3443   356678999999888755443333334555555

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.22  E-value=6.9e-08  Score=80.43  Aligned_cols=84  Identities=19%  Similarity=0.323  Sum_probs=36.6

Q ss_pred             CCcEEEcccCCCCCCChhhcc-CCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEe
Q 045837          243 NVNEIILSNNDLMGCLPSEIG-WLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTF  321 (527)
Q Consensus       243 ~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  321 (527)
                      .|+.++|++|.+. ..+..|. ....++.|+|++|.|+ .+|..+..++.|+.|+++.|.|... +..+..+.+|..|+.
T Consensus        54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~-p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAE-PRVIAPLIKLDMLDS  130 (177)
T ss_pred             eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccc-hHHHHHHHhHHHhcC
Confidence            3444444444444 2222222 2234444555555544 3444444455555555555544422 223333444444554


Q ss_pred             cCcccCCC
Q 045837          322 SYNYFQGL  329 (527)
Q Consensus       322 s~N~l~~~  329 (527)
                      .+|.+..+
T Consensus       131 ~~na~~ei  138 (177)
T KOG4579|consen  131 PENARAEI  138 (177)
T ss_pred             CCCccccC
Confidence            44544433

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.20  E-value=3.4e-07  Score=76.36  Aligned_cols=111  Identities=20%  Similarity=0.172  Sum_probs=84.4

Q ss_pred             CCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccE
Q 045837           97 SNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRY  176 (527)
Q Consensus        97 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  176 (527)
                      ....+|+.++|++|.|....+.....++.++.|+|++|.|+ .+|..+..++.|+.|++++|.+. ..+..+..|.+|.+
T Consensus        50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~  127 (177)
T KOG4579|consen   50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM  127 (177)
T ss_pred             hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence            34567899999999997744434456678899999999998 56667999999999999999998 66777777899999


Q ss_pred             EecccCCCCCCcchhhhcc-ccchhhccccccccc
Q 045837          177 LDLRYNNFEGEVPRELFKM-KLDAIFLNNNRFSSW  210 (527)
Q Consensus       177 L~Ls~n~i~~~~p~~~~~~-~L~~L~L~~n~l~~~  210 (527)
                      |+..+|.+. .++..++.. ..-.+.+.++.+.+.
T Consensus       128 Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~  161 (177)
T KOG4579|consen  128 LDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDE  161 (177)
T ss_pred             hcCCCCccc-cCcHHHhccccHHHHHhcCCccccc
Confidence            999999887 676665553 444455666666553

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.11  E-value=2.9e-07  Score=86.38  Aligned_cols=230  Identities=13%  Similarity=0.090  Sum_probs=136.0

Q ss_pred             CCCCCCEEEccCCccccccc-ccc-cCCCCCcEEEeecCcCcc--cCCcccccCCcccEEecccCCCCCCcchh-hhccc
Q 045837          122 WLSDLALFHVNSNRFCGIIP-ESL-SNWKLIYEFDVSNNRLVG--SFPNVCLSWTSLRYLDLRYNNFEGEVPRE-LFKMK  196 (527)
Q Consensus       122 ~l~~L~~L~Ls~n~i~~~~~-~~~-~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~-~~~~~  196 (527)
                      ..+.++.|.+.++.|...-. +.| ..+..+++|||.+|.|+.  .+...+.+|+.|+.|+|+.|.+...|-.. +-..+
T Consensus        43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n  122 (418)
T KOG2982|consen   43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN  122 (418)
T ss_pred             cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence            34455667777776653211 122 335678999999998862  33345667889999999999887544333 22258


Q ss_pred             cchhhccccccccccccccC--CCCcceEeccCCcCCccCC--CCCCCC-CCCcEEEcccCCCCC--CChhhccCCCCCC
Q 045837          197 LDAIFLNNNRFSSWIPETIG--ESTVSVVTFAHNNFSGCVP--RSIGNM-PNVNEIILSNNDLMG--CLPSEIGWLKKLT  269 (527)
Q Consensus       197 L~~L~L~~n~l~~~~~~~~~--~~~L~~L~L~~n~l~~~~~--~~l~~l-~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~  269 (527)
                      |+.|.|.+..+.+.....+.  ...+++|.++.|++.....  +....+ +.+++|.+-.|...-  ..-.....+.++.
T Consensus       123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~  202 (418)
T KOG2982|consen  123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN  202 (418)
T ss_pred             eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence            88888888877664443332  2346677777664432111  111112 134444443332210  0000112345677


Q ss_pred             EEEccCCcccccC-CcccCCCCCCcEEeccCCCCCCcc-hhhhhCCCCCcEEEecCcccCCCCCC------CCCCCCCCc
Q 045837          270 VFDASSNSFYGSV-PQSFSSLESIHRLVLSYNQLTGYV-SEQICKLPNINNFTFSYNYFQGLGNE------CIPGSKEGG  341 (527)
Q Consensus       270 ~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~------~~~~l~~L~  341 (527)
                      .+.+..|.+...- -+.+..++.+..|+|+.|+|.+.. -+.+.+++.|..|.+++|-+.+....      .++.+.+++
T Consensus       203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~  282 (418)
T KOG2982|consen  203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQ  282 (418)
T ss_pred             heeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceE
Confidence            7777777664221 234555667778999999998653 25678889999999999987654332      255677777


Q ss_pred             eecCCCCCCCCC
Q 045837          342 VFDDTSNCLAQR  353 (527)
Q Consensus       342 ~L~l~~N~l~~~  353 (527)
                      .|+-+  .|++.
T Consensus       283 vLNGs--kIss~  292 (418)
T KOG2982|consen  283 VLNGS--KISSR  292 (418)
T ss_pred             EecCc--ccchh
Confidence            77554  66643

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.04  E-value=6.4e-06  Score=73.44  Aligned_cols=100  Identities=18%  Similarity=0.279  Sum_probs=42.5

Q ss_pred             ceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccC-CcccCCCCCCcEEeccC
Q 045837          221 SVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSV-PQSFSSLESIHRLVLSY  299 (527)
Q Consensus       221 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~  299 (527)
                      ..++|++|.+...  +.|..+..|.+|.|.+|+|+.+-+.--..+.+|+.|.|.+|+|.... -.-+..+++|++|.+-+
T Consensus        45 d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   45 DAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             ceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence            3344444444321  23444455555555555555333332223344555555555543110 01233444555555555


Q ss_pred             CCCCCc---chhhhhCCCCCcEEEec
Q 045837          300 NQLTGY---VSEQICKLPNINNFTFS  322 (527)
Q Consensus       300 N~l~~~---~~~~l~~l~~L~~L~Ls  322 (527)
                      |.++..   -...+..+++|++||++
T Consensus       123 Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  123 NPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             CchhcccCceeEEEEecCcceEeehh
Confidence            544321   11233444455555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.90  E-value=5.7e-06  Score=89.92  Aligned_cols=110  Identities=13%  Similarity=0.134  Sum_probs=67.4

Q ss_pred             CCCCCcEEEcccCCCCCC-ChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCC-cchhhhhCCCCCc
Q 045837          240 NMPNVNEIILSNNDLMGC-LPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTG-YVSEQICKLPNIN  317 (527)
Q Consensus       240 ~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~l~~L~  317 (527)
                      .++.|+.|.+++-.+... .-....++.+|..||+|+.+++..  ..+..+++|+.|.+.+=.+.. ..-..+.+|++|+
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence            356777777777555322 223345667777777777777633  456667777777776665553 2234566777777


Q ss_pred             EEEecCcccCCCC------CCCCCCCCCCceecCCCCCCC
Q 045837          318 NFTFSYNYFQGLG------NECIPGSKEGGVFDDTSNCLA  351 (527)
Q Consensus       318 ~L~Ls~N~l~~~~------~~~~~~l~~L~~L~l~~N~l~  351 (527)
                      +||+|........      -+|...+++|+.||.+++.+.
T Consensus       224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             eeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            7777766544321      134455777778877777666

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.81  E-value=1.8e-05  Score=53.42  Aligned_cols=12  Identities=42%  Similarity=0.617  Sum_probs=3.7

Q ss_pred             CcEEEcccCCCC
Q 045837          244 VNEIILSNNDLM  255 (527)
Q Consensus       244 L~~L~Ls~N~l~  255 (527)
                      |++|++++|+|+
T Consensus         3 L~~L~l~~N~i~   14 (44)
T PF12799_consen    3 LEELDLSNNQIT   14 (44)
T ss_dssp             -SEEEETSSS-S
T ss_pred             ceEEEccCCCCc
Confidence            333333333333

...

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=97.81  E-value=0.002  Score=64.68  Aligned_cols=25  Identities=16%  Similarity=0.321  Sum_probs=12.3

Q ss_pred             ceeeCCCCCCCCcceEEEEEcCCCC
Q 045837           87 GVFCAPAPDNSNITVVAGIDLNGND  111 (527)
Q Consensus        87 gv~c~~~~~~~~~~~L~~L~L~~n~  111 (527)
                      |+.|.....-.+..-|+..||.+++
T Consensus        64 Gal~lVkD~~~rsyFlrl~di~~~r   88 (569)
T KOG3671|consen   64 GALCLVKDNAQRSYFLRLVDIVNNR   88 (569)
T ss_pred             eeEEEeeccccceeeeEEeeecCce
Confidence            4556433333344455555555554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.80  E-value=3.3e-05  Score=68.97  Aligned_cols=128  Identities=16%  Similarity=0.143  Sum_probs=91.1

Q ss_pred             CcceEeccCCcCCccCCCCCCC-CCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEec
Q 045837          219 TVSVVTFAHNNFSGCVPRSIGN-MPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVL  297 (527)
Q Consensus       219 ~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  297 (527)
                      .-++++|.+.++....  .++. +.+...+||++|++. .+. .|..+..|.+|.|++|.|+.+-+..-..+.+|+.|.|
T Consensus        20 ~e~e~~LR~lkip~ie--nlg~~~d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~L   95 (233)
T KOG1644|consen   20 RERELDLRGLKIPVIE--NLGATLDQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLIL   95 (233)
T ss_pred             cccccccccccccchh--hccccccccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEe
Confidence            3456666666655221  1222 257888999999987 332 5778899999999999999666655555678999999


Q ss_pred             cCCCCCCcc-hhhhhCCCCCcEEEecCcccCCCCC---CCCCCCCCCceecCCCCCC
Q 045837          298 SYNQLTGYV-SEQICKLPNINNFTFSYNYFQGLGN---ECIPGSKEGGVFDDTSNCL  350 (527)
Q Consensus       298 s~N~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~l~~N~l  350 (527)
                      .+|.|.... -+-+..+++|++|.+-+|.++....   -.+..+++|++||.+.-..
T Consensus        96 tnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen   96 TNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             cCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            999887432 1346678899999999998876432   2356778999998875443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.77  E-value=2.9e-05  Score=52.37  Aligned_cols=38  Identities=32%  Similarity=0.481  Sum_probs=27.6

Q ss_pred             CCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCC
Q 045837          266 KKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTG  304 (527)
Q Consensus       266 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  304 (527)
                      ++|++|+|++|+|+ .++..++++.+|+.|+|++|+|+.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            46788888888887 455567888888888888888774

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.74  E-value=5.3e-05  Score=76.32  Aligned_cols=137  Identities=13%  Similarity=0.188  Sum_probs=85.2

Q ss_pred             ccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhcccc-ccccccccccCCCCcce
Q 045837          144 LSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNN-RFSSWIPETIGESTVSV  222 (527)
Q Consensus       144 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~L~~  222 (527)
                      +..+.++++|++++|.++ .++. +  -.+|+.|+++++.--..++..+ ..+|++|++++| .+.. ++     ..|+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~s-LP-----~sLe~  116 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISG-LP-----ESVRS  116 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccc-cc-----cccce
Confidence            455688999999999888 4452 2  2469999998854333555433 468999999988 4432 22     24777


Q ss_pred             EeccCCcCCccCCCCCCCC-CCCcEEEcccCCCC--CCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccC
Q 045837          223 VTFAHNNFSGCVPRSIGNM-PNVNEIILSNNDLM--GCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSY  299 (527)
Q Consensus       223 L~L~~n~l~~~~~~~l~~l-~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  299 (527)
                      |++..+....     +..+ .+|++|++.+++..  ..++.  .-..+|++|++++|... .++..+-  .+|++|++++
T Consensus       117 L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~  186 (426)
T PRK15386        117 LEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI  186 (426)
T ss_pred             EEeCCCCCcc-----cccCcchHhheecccccccccccccc--ccCCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence            8877655431     2333 35777777543311  01111  11267889999888765 3443333  5888888877


Q ss_pred             CC
Q 045837          300 NQ  301 (527)
Q Consensus       300 N~  301 (527)
                      |.
T Consensus       187 n~  188 (426)
T PRK15386        187 EQ  188 (426)
T ss_pred             cc
Confidence            63

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.64  E-value=2e-05  Score=85.74  Aligned_cols=87  Identities=17%  Similarity=0.145  Sum_probs=49.9

Q ss_pred             CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCC-CChhhccCCCCCCEEEccCCcccccC------CcccCCCC
Q 045837          218 STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMG-CLPSEIGWLKKLTVFDASSNSFYGSV------PQSFSSLE  290 (527)
Q Consensus       218 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~------p~~~~~l~  290 (527)
                      .+|..||+++++++..  .+++++++|++|.+.+-.+.. ..-..+.+|++|+.||+|........      -+.-..++
T Consensus       173 pNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lp  250 (699)
T KOG3665|consen  173 PNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLP  250 (699)
T ss_pred             CccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCc
Confidence            4566666666666643  456677777777776655542 12234556777777777765443111      01223456


Q ss_pred             CCcEEeccCCCCCCcc
Q 045837          291 SIHRLVLSYNQLTGYV  306 (527)
Q Consensus       291 ~L~~L~Ls~N~l~~~~  306 (527)
                      +|+.||.|+..+.+.+
T Consensus       251 eLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  251 ELRFLDCSGTDINEEI  266 (699)
T ss_pred             cccEEecCCcchhHHH
Confidence            7777777776666543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.53  E-value=0.00021  Score=72.13  Aligned_cols=136  Identities=12%  Similarity=0.197  Sum_probs=87.3

Q ss_pred             ccCCCCCCCEEEccCCcccccccccccCC-CCCcEEEeecCcCcccCCcccccCCcccEEecccC-CCCCCcchhhhccc
Q 045837          119 ELGWLSDLALFHVNSNRFCGIIPESLSNW-KLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYN-NFEGEVPRELFKMK  196 (527)
Q Consensus       119 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~p~~~~~~~  196 (527)
                      .+..+.++++|++++|.|+. ++    .+ .+|++|+++++.--..+++.+.  .+|++|++++| .+. .++.     .
T Consensus        47 r~~~~~~l~~L~Is~c~L~s-LP----~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~-----s  113 (426)
T PRK15386         47 QIEEARASGRLYIKDCDIES-LP----VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE-----S  113 (426)
T ss_pred             HHHHhcCCCEEEeCCCCCcc-cC----CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc-----c
Confidence            45567899999999998874 34    23 3699999988543335665553  68999999998 554 4544     5


Q ss_pred             cchhhcccccccc--ccccccCCCCcceEeccCCcCCccCCCCCC-CC-CCCcEEEcccCCCCCCChhhccCCCCCCEEE
Q 045837          197 LDAIFLNNNRFSS--WIPETIGESTVSVVTFAHNNFSGCVPRSIG-NM-PNVNEIILSNNDLMGCLPSEIGWLKKLTVFD  272 (527)
Q Consensus       197 L~~L~L~~n~l~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  272 (527)
                      |+.|++..+....  .++     .+|++|.+.+++....  ..+. .+ .+|++|++++|... .++..+  ..+|+.|+
T Consensus       114 Le~L~L~~n~~~~L~~LP-----ssLk~L~I~~~n~~~~--~~lp~~LPsSLk~L~Is~c~~i-~LP~~L--P~SLk~L~  183 (426)
T PRK15386        114 VRSLEIKGSATDSIKNVP-----NGLTSLSINSYNPENQ--ARIDNLISPSLKTLSLTGCSNI-ILPEKL--PESLQSIT  183 (426)
T ss_pred             cceEEeCCCCCcccccCc-----chHhheeccccccccc--cccccccCCcccEEEecCCCcc-cCcccc--cccCcEEE
Confidence            6777776655432  111     2477777754331111  1111 12 57999999998865 444433  26889999


Q ss_pred             ccCCc
Q 045837          273 ASSNS  277 (527)
Q Consensus       273 Ls~n~  277 (527)
                      ++.+.
T Consensus       184 ls~n~  188 (426)
T PRK15386        184 LHIEQ  188 (426)
T ss_pred             ecccc
Confidence            88763

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=97.53  E-value=0.0027  Score=63.78  Aligned_cols=12  Identities=33%  Similarity=0.437  Sum_probs=7.8

Q ss_pred             CCCEEEccCCcc
Q 045837          125 DLALFHVNSNRF  136 (527)
Q Consensus       125 ~L~~L~Ls~n~i  136 (527)
                      .|+.+||.+|+|
T Consensus        78 Flrl~di~~~rl   89 (569)
T KOG3671|consen   78 FLRLVDIVNNRL   89 (569)
T ss_pred             eeEEeeecCcee
Confidence            466677777664

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.33  E-value=0.00054  Score=58.30  Aligned_cols=114  Identities=13%  Similarity=0.191  Sum_probs=40.8

Q ss_pred             CcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEecc
Q 045837          219 TVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLS  298 (527)
Q Consensus       219 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  298 (527)
                      +|+.+.+.. .+.......|.++.+|+.+++.++ +...-...|.++.+|+.+++.+ .+.......|..+.+|+.+++.
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP   89 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence            455555542 333333344555555666665553 3323333455555556665544 2222223344455556665554


Q ss_pred             CCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCC
Q 045837          299 YNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSK  338 (527)
Q Consensus       299 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  338 (527)
                      .+ +..+....|.++ +|+.+.+.. .+..+...+|.++.
T Consensus        90 ~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~  126 (129)
T PF13306_consen   90 SN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCT  126 (129)
T ss_dssp             TT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG---
T ss_pred             cc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccc
Confidence            43 332333344444 555555543 33333333444433

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.29  E-value=0.00018  Score=66.97  Aligned_cols=98  Identities=17%  Similarity=0.282  Sum_probs=53.2

Q ss_pred             cceEeccCCcCCccCCCCCCCCCCCcEEEcccC--CCCCCChhhccCCCCCCEEEccCCcccccCC--cccCCCCCCcEE
Q 045837          220 VSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNN--DLMGCLPSEIGWLKKLTVFDASSNSFYGSVP--QSFSSLESIHRL  295 (527)
Q Consensus       220 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L  295 (527)
                      |+.|.+.+..++..  ..|-.|++|++|.++.|  ++.+.+......+.+|++|+|++|+|.. +-  ..+..+.+|..|
T Consensus        45 le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~l~nL~~L  121 (260)
T KOG2739|consen   45 LELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKELENLKSL  121 (260)
T ss_pred             hhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhhhcchhhh
Confidence            44444445444432  23445567777777777  5555554444555777777777777652 11  123445566677


Q ss_pred             eccCCCCCCcc---hhhhhCCCCCcEEE
Q 045837          296 VLSYNQLTGYV---SEQICKLPNINNFT  320 (527)
Q Consensus       296 ~Ls~N~l~~~~---~~~l~~l~~L~~L~  320 (527)
                      ++.+|..+...   -..|.-+++|++||
T Consensus       122 dl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  122 DLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hcccCCccccccHHHHHHHHhhhhcccc
Confidence            77777655421   12344455555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.10  E-value=0.0013  Score=55.93  Aligned_cols=112  Identities=13%  Similarity=0.184  Sum_probs=69.8

Q ss_pred             CCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCC
Q 045837          236 RSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPN  315 (527)
Q Consensus       236 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  315 (527)
                      ..|.++.+|+.+.+.. .+...-...|.++.+|+.+++.++ +.......|.++.+|+.+++.+ .+.......|..+.+
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            4577788999999985 566455667888989999999886 6655556788888999999976 555455567888999


Q ss_pred             CcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCC
Q 045837          316 INNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQR  353 (527)
Q Consensus       316 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  353 (527)
                      |+.+++..+ +..+....|.++ +|+.+.+.. .+..+
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i  117 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKI  117 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS-
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEE
Confidence            999999776 666666678887 888888775 44433

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.06  E-value=0.00026  Score=66.02  Aligned_cols=90  Identities=17%  Similarity=0.166  Sum_probs=65.0

Q ss_pred             CCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCC--cccccCCcccCCCCCCcEEeccCCCCCCc-chhhhhCCC
Q 045837          238 IGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSN--SFYGSVPQSFSSLESIHRLVLSYNQLTGY-VSEQICKLP  314 (527)
Q Consensus       238 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~  314 (527)
                      .-.+.+|+.|++.+..++...  .|-.+.+|++|+++.|  .+.+.+.-....+++|++|+|++|+|..+ --..+..+.
T Consensus        39 ~d~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~  116 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE  116 (260)
T ss_pred             cccccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence            344567777778777776322  3556789999999999  56655555556679999999999998742 113456777


Q ss_pred             CCcEEEecCcccCCC
Q 045837          315 NINNFTFSYNYFQGL  329 (527)
Q Consensus       315 ~L~~L~Ls~N~l~~~  329 (527)
                      +|..|++.+|..+..
T Consensus       117 nL~~Ldl~n~~~~~l  131 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTNL  131 (260)
T ss_pred             chhhhhcccCCcccc
Confidence            888999999877663

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.05  E-value=2.1e-05  Score=73.44  Aligned_cols=89  Identities=17%  Similarity=0.142  Sum_probs=60.2

Q ss_pred             cceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccC-CcccccCCcccEE
Q 045837           99 ITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF-PNVCLSWTSLRYL  177 (527)
Q Consensus        99 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L  177 (527)
                      +.+++.|++-++++.++  .....|+.|+.|.|+-|+|+...  .|..+++|++|+|+.|.|..+- -..+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            45667777777777664  23457788888888888887553  3677788888888888776321 1245667778888


Q ss_pred             ecccCCCCCCcchh
Q 045837          178 DLRYNNFEGEVPRE  191 (527)
Q Consensus       178 ~Ls~n~i~~~~p~~  191 (527)
                      .|..|.-.|.....
T Consensus        94 WL~ENPCc~~ag~n  107 (388)
T KOG2123|consen   94 WLDENPCCGEAGQN  107 (388)
T ss_pred             hhccCCcccccchh
Confidence            88877766554443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.01  E-value=3.5e-05  Score=72.03  Aligned_cols=96  Identities=18%  Similarity=0.204  Sum_probs=59.3

Q ss_pred             cceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCC--cccCCCCCCcEEec
Q 045837          220 VSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVP--QSFSSLESIHRLVL  297 (527)
Q Consensus       220 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~L  297 (527)
                      ++.|++.+|.++++.  ....|..|++|.||-|+|+..-  .|..|++|++|+|..|.|.. +.  ..+.++++|+.|+|
T Consensus        21 vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   21 VKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             hhhhcccCCCccHHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhh
Confidence            455666666665431  2345677778888888777332  35667777777777777752 22  23567777788888


Q ss_pred             cCCCCCCcc-----hhhhhCCCCCcEEE
Q 045837          298 SYNQLTGYV-----SEQICKLPNINNFT  320 (527)
Q Consensus       298 s~N~l~~~~-----~~~l~~l~~L~~L~  320 (527)
                      ..|--.|..     ...+.-|++|++||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            777554432     22455566666665

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.95  E-value=2.9e-05  Score=76.50  Aligned_cols=84  Identities=11%  Similarity=0.132  Sum_probs=48.9

Q ss_pred             ceEEEEEcCCCCcCCCC--ccccCCCCCCCEEEccCCc-ccccccccc-cCCCCCcEEEeecC-cCcccCCc-ccccCCc
Q 045837          100 TVVAGIDLNGNDIAGYF--PAELGWLSDLALFHVNSNR-FCGIIPESL-SNWKLIYEFDVSNN-RLVGSFPN-VCLSWTS  173 (527)
Q Consensus       100 ~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~  173 (527)
                      ..|+.|.|+++.-.+.-  -....+++++++|++.++. |+...-..+ ..+.+|++|+|..+ .|+...-. ...++.+
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            46777778777654432  1233467788888887764 332222222 44677888888773 34422211 2345678


Q ss_pred             ccEEecccCC
Q 045837          174 LRYLDLRYNN  183 (527)
Q Consensus       174 L~~L~Ls~n~  183 (527)
                      |++|+++++.
T Consensus       218 L~~lNlSwc~  227 (483)
T KOG4341|consen  218 LKYLNLSWCP  227 (483)
T ss_pred             HHHhhhccCc
Confidence            8888887764

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.63  E-value=2.5e-05  Score=81.42  Aligned_cols=179  Identities=20%  Similarity=0.188  Sum_probs=84.7

Q ss_pred             CCEEEccCCccccc----ccccccCCCCCcEEEeecCcCcccCC----cccccC-CcccEEecccCCCCCCcchhhhc--
Q 045837          126 LALFHVNSNRFCGI----IPESLSNWKLIYEFDVSNNRLVGSFP----NVCLSW-TSLRYLDLRYNNFEGEVPRELFK--  194 (527)
Q Consensus       126 L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l-~~L~~L~Ls~n~i~~~~p~~~~~--  194 (527)
                      +..|.|.+|.+...    +...+..+..|+.|++++|.+.+.-.    ..+... ..|++|++..|.+++.....+..  
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            67777777777643    23345556677777777777753211    122222 45666777777666433322221  


Q ss_pred             ---cccchhhcccccccccc----cccc-----CCCCcceEeccCCcCCccC----CCCCCCCCC-CcEEEcccCCCCCC
Q 045837          195 ---MKLDAIFLNNNRFSSWI----PETI-----GESTVSVVTFAHNNFSGCV----PRSIGNMPN-VNEIILSNNDLMGC  257 (527)
Q Consensus       195 ---~~L~~L~L~~n~l~~~~----~~~~-----~~~~L~~L~L~~n~l~~~~----~~~l~~l~~-L~~L~Ls~N~l~~~  257 (527)
                         ..++.++++.|.+....    ...+     ...++++|.+++|.++...    ...+..... +.+|++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence               35666666666653210    0011     1123555555555554211    111222223 44455555555422


Q ss_pred             ----ChhhccCC-CCCCEEEccCCcccccCC----cccCCCCCCcEEeccCCCCCC
Q 045837          258 ----LPSEIGWL-KKLTVFDASSNSFYGSVP----QSFSSLESIHRLVLSYNQLTG  304 (527)
Q Consensus       258 ----~p~~~~~l-~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~  304 (527)
                          +...+..+ ..+++++++.|.|+....    +.+..+..++.|.+++|.+..
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence                11122233 344555555555543221    223334455555555555543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.63  E-value=2.2e-05  Score=81.84  Aligned_cols=180  Identities=19%  Similarity=0.222  Sum_probs=100.3

Q ss_pred             CCcEEEeecCcCccc----CCcccccCCcccEEecccCCCCCCcchhhhc------cccchhhcccccccccccccc---
Q 045837          149 LIYEFDVSNNRLVGS----FPNVCLSWTSLRYLDLRYNNFEGEVPRELFK------MKLDAIFLNNNRFSSWIPETI---  215 (527)
Q Consensus       149 ~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~------~~L~~L~L~~n~l~~~~~~~~---  215 (527)
                      .+..|.|.+|.+...    +...+..+..|..|++++|.+.+..-..+..      ..+++|++..|.+++.....+   
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            377888888888643    2234556788888999999887433333322      356777787777766433322   


Q ss_pred             --CCCCcceEeccCCcCCcc----CCCCCC----CCCCCcEEEcccCCCCCCC----hhhccCCCC-CCEEEccCCcccc
Q 045837          216 --GESTVSVVTFAHNNFSGC----VPRSIG----NMPNVNEIILSNNDLMGCL----PSEIGWLKK-LTVFDASSNSFYG  280 (527)
Q Consensus       216 --~~~~L~~L~L~~n~l~~~----~~~~l~----~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~-L~~L~Ls~n~l~~  280 (527)
                        ....++.++++.|.+...    +...+.    ...++++|.+.+|.++...    ...+..... +..|++..|++..
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence              123466777777766421    112222    3556677777776665211    112233333 5556666666643


Q ss_pred             cC----CcccCCC-CCCcEEeccCCCCCCc----chhhhhCCCCCcEEEecCcccCC
Q 045837          281 SV----PQSFSSL-ESIHRLVLSYNQLTGY----VSEQICKLPNINNFTFSYNYFQG  328 (527)
Q Consensus       281 ~~----p~~~~~l-~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~  328 (527)
                      ..    ...+..+ ..++.++++.|.|+..    +.+.+..+.+++++.+++|.+..
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            21    1223333 4556666666666543    23334455566666666666653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.39  E-value=0.00027  Score=69.93  Aligned_cols=250  Identities=13%  Similarity=0.050  Sum_probs=138.5

Q ss_pred             CCcceEEEEEcCCCCc-CCCCcccc-CCCCCCCEEEccCC-cccccccc-cccCCCCCcEEEeecCc-Cccc-CCccccc
Q 045837           97 SNITVVAGIDLNGNDI-AGYFPAEL-GWLSDLALFHVNSN-RFCGIIPE-SLSNWKLIYEFDVSNNR-LVGS-FPNVCLS  170 (527)
Q Consensus        97 ~~~~~L~~L~L~~n~l-~~~~~~~l-~~l~~L~~L~Ls~n-~i~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~-~~~~~~~  170 (527)
                      .+++++++|.|.++.. ++..-..+ ..+++|++|++..| .|+...-. -..++++|++|+++.+. |++. +-..+.+
T Consensus       161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG  240 (483)
T KOG4341|consen  161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG  240 (483)
T ss_pred             hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence            4667888888888753 22111122 36789999999984 45543322 23568899999998874 3321 1123455


Q ss_pred             CCcccEEecccCCCCCCcchhhhc-----cccchhhccccc-cccccccc--cCCCCcceEeccCCcCCcc-CCCC-CCC
Q 045837          171 WTSLRYLDLRYNNFEGEVPRELFK-----MKLDAIFLNNNR-FSSWIPET--IGESTVSVVTFAHNNFSGC-VPRS-IGN  240 (527)
Q Consensus       171 l~~L~~L~Ls~n~i~~~~p~~~~~-----~~L~~L~L~~n~-l~~~~~~~--~~~~~L~~L~L~~n~l~~~-~~~~-l~~  240 (527)
                      +++|+.+.+.++.=.  --..+..     ..+..+++..|. +++..-..  .+...|+.|..+++...+. .-.. ..+
T Consensus       241 ~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~  318 (483)
T KOG4341|consen  241 CKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQH  318 (483)
T ss_pred             chhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcC
Confidence            667777776654311  1111111     234455554553 33321111  1234578888877654321 1111 234


Q ss_pred             CCCCcEEEcccCCC-CCCChhhc-cCCCCCCEEEccCCccc--ccCCcccCCCCCCcEEeccCCCCCCcc-----hhhhh
Q 045837          241 MPNVNEIILSNNDL-MGCLPSEI-GWLKKLTVFDASSNSFY--GSVPQSFSSLESIHRLVLSYNQLTGYV-----SEQIC  311 (527)
Q Consensus       241 l~~L~~L~Ls~N~l-~~~~p~~~-~~l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~-----~~~l~  311 (527)
                      ..+|+.|.++.++- +..--..+ .++..|+.+|+.++...  +.+...-.++..|+.|.|+++.+....     ...-+
T Consensus       319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c  398 (483)
T KOG4341|consen  319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC  398 (483)
T ss_pred             CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence            57888888888863 21111112 35678888888887653  112222345678888888887543211     12234


Q ss_pred             CCCCCcEEEecCcccC-CCCCCCCCCCCCCceecCCCC
Q 045837          312 KLPNINNFTFSYNYFQ-GLGNECIPGSKEGGVFDDTSN  348 (527)
Q Consensus       312 ~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~l~~N  348 (527)
                      .+..|+.+.|++..+. +..-..+..+++|+.+++-+.
T Consensus       399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             cccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            5677888888887543 333344556667777666443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.88  E-value=0.0005  Score=72.63  Aligned_cols=15  Identities=27%  Similarity=0.016  Sum_probs=7.4

Q ss_pred             cCCCCCCEEEccCCc
Q 045837          263 GWLKKLTVFDASSNS  277 (527)
Q Consensus       263 ~~l~~L~~L~Ls~n~  277 (527)
                      ..+.+|+.+.|.++.
T Consensus       359 ~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  359 RSCPKLTDLSLSYCG  373 (482)
T ss_pred             hcCCCcchhhhhhhh
Confidence            344555555555544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.27  E-value=0.0012  Score=69.84  Aligned_cols=60  Identities=12%  Similarity=0.096  Sum_probs=30.9

Q ss_pred             cccchhhccccc-cccccccccC--CCCcceEeccCCc-CCccCC-CCCCCCCCCcEEEcccCCC
Q 045837          195 MKLDAIFLNNNR-FSSWIPETIG--ESTVSVVTFAHNN-FSGCVP-RSIGNMPNVNEIILSNNDL  254 (527)
Q Consensus       195 ~~L~~L~L~~n~-l~~~~~~~~~--~~~L~~L~L~~n~-l~~~~~-~~l~~l~~L~~L~Ls~N~l  254 (527)
                      .+|+.|+++++. +++..-..+.  ..+|++|.+.++. +++..- .....+.+|++|+|+++..
T Consensus       243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            456666666665 3332222222  2357777766555 343211 1223456677777777654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.78  E-value=0.015  Score=32.64  Aligned_cols=12  Identities=33%  Similarity=0.437  Sum_probs=5.5

Q ss_pred             CCEEEccCCccc
Q 045837          268 LTVFDASSNSFY  279 (527)
Q Consensus       268 L~~L~Ls~n~l~  279 (527)
                      |++|||++|+|+
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.46  E-value=0.00064  Score=62.18  Aligned_cols=86  Identities=20%  Similarity=0.179  Sum_probs=47.8

Q ss_pred             CCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCc
Q 045837          238 IGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNIN  317 (527)
Q Consensus       238 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~  317 (527)
                      +..+...+.||++.|++. .+-..|+.++.|..||++.|++. .+++.+++...+..+++.+|.++ ..|.++...++++
T Consensus        38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence            344455566666666554 34444555555666666666654 45555555555555555555554 3455555556666


Q ss_pred             EEEecCccc
Q 045837          318 NFTFSYNYF  326 (527)
Q Consensus       318 ~L~Ls~N~l  326 (527)
                      ++++.+|.|
T Consensus       115 ~~e~k~~~~  123 (326)
T KOG0473|consen  115 KNEQKKTEF  123 (326)
T ss_pred             hhhhccCcc
Confidence            666555544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.26  E-value=0.023  Score=31.84  Aligned_cols=12  Identities=17%  Similarity=0.420  Sum_probs=5.4

Q ss_pred             CCEEEccCCccc
Q 045837          126 LALFHVNSNRFC  137 (527)
Q Consensus       126 L~~L~Ls~n~i~  137 (527)
                      |++|+|++|+|+
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.44  E-value=0.0019  Score=59.19  Aligned_cols=87  Identities=13%  Similarity=0.159  Sum_probs=71.8

Q ss_pred             CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCccc
Q 045837           96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLR  175 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  175 (527)
                      ...+++++.||++.|++.. +-..|.-++.|..|+++.|.|. ..+.++..+..++.+++.+|+.. ..|.++..+..++
T Consensus        38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence            4567889999999998754 2346777788899999999887 56778888888999999999887 6788888999999


Q ss_pred             EEecccCCCC
Q 045837          176 YLDLRYNNFE  185 (527)
Q Consensus       176 ~L~Ls~n~i~  185 (527)
                      ++++..|.+.
T Consensus       115 ~~e~k~~~~~  124 (326)
T KOG0473|consen  115 KNEQKKTEFF  124 (326)
T ss_pred             hhhhccCcch
Confidence            9999998865

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.80  E-value=0.11  Score=34.59  Aligned_cols=20  Identities=35%  Similarity=0.772  Sum_probs=13.1

Q ss_pred             ccCCCCCC---CCCccccceeeC
Q 045837           72 TRQGNWVG---TDVCSYYGVFCA   91 (527)
Q Consensus        72 ~~~~~w~~---~~~c~~~gv~c~   91 (527)
                      ..+.+|..   .++|+|.||+|+
T Consensus        21 ~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen   21 GVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cccccCCCcCCCCCeeeccEEeC
Confidence            44678964   699999999994

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.47  E-value=0.02  Score=51.58  Aligned_cols=83  Identities=17%  Similarity=0.107  Sum_probs=55.3

Q ss_pred             ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCccccccc-cccc-CCCCCcEEEeecC-cCcccCCcccccCCcccE
Q 045837          100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIP-ESLS-NWKLIYEFDVSNN-RLVGSFPNVCLSWTSLRY  176 (527)
Q Consensus       100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~~-~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~  176 (527)
                      ..++.+|-++..|..+--+.+.+++.|+.|.+.++.-.+... +.++ -..+|+.|+|++| +|+..--..+..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            458889999988876655677778888888888875443211 1122 3467888888866 566544445666788888


Q ss_pred             EecccC
Q 045837          177 LDLRYN  182 (527)
Q Consensus       177 L~Ls~n  182 (527)
                      |.|++=
T Consensus       181 L~l~~l  186 (221)
T KOG3864|consen  181 LHLYDL  186 (221)
T ss_pred             HHhcCc
Confidence            777653

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.45  E-value=0.014  Score=52.59  Aligned_cols=81  Identities=14%  Similarity=0.131  Sum_probs=54.3

Q ss_pred             CCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCC-cccC-CCCCCcEEeccCC-CCCCcchhhhhCCCCCcEE
Q 045837          243 NVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVP-QSFS-SLESIHRLVLSYN-QLTGYVSEQICKLPNINNF  319 (527)
Q Consensus       243 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~-~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L  319 (527)
                      .++.+|-++..|..+--+.+.++..|+.|.+.+|.-.+..- +.++ -..+|+.|+|++| +|+...-..+.++++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            57788888888876666667777888888887775321100 0111 2367888888877 6776666677777777777


Q ss_pred             EecC
Q 045837          320 TFSY  323 (527)
Q Consensus       320 ~Ls~  323 (527)
                      .|.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            7655

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.32  E-value=0.19  Score=26.11  Aligned_cols=13  Identities=46%  Similarity=0.636  Sum_probs=4.6

Q ss_pred             cccEEecccCCCC
Q 045837          173 SLRYLDLRYNNFE  185 (527)
Q Consensus       173 ~L~~L~Ls~n~i~  185 (527)
                      +|+.|+|++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444443

...

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=89.96  E-value=1.3  Score=45.28  Aligned_cols=18  Identities=28%  Similarity=0.292  Sum_probs=12.4

Q ss_pred             ceEEEEEcCCCCcCCCCc
Q 045837          100 TVVAGIDLNGNDIAGYFP  117 (527)
Q Consensus       100 ~~L~~L~L~~n~l~~~~~  117 (527)
                      .+++.++++.|.+....+
T Consensus       165 pr~r~~dls~npi~dkvp  182 (553)
T KOG4242|consen  165 PRARQHDLSPNPIGDKVP  182 (553)
T ss_pred             chhhhhccCCCcccccCC
Confidence            466788888887765544

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=88.79  E-value=1  Score=45.98  Aligned_cols=245  Identities=14%  Similarity=0.051  Sum_probs=134.3

Q ss_pred             EEcCCCCcCCCCccccC---CCCCCCEEEccCCcccccccccccCC---CCCcEEEeecCcCcc---cCCcccccCCccc
Q 045837          105 IDLNGNDIAGYFPAELG---WLSDLALFHVNSNRFCGIIPESLSNW---KLIYEFDVSNNRLVG---SFPNVCLSWTSLR  175 (527)
Q Consensus       105 L~L~~n~l~~~~~~~l~---~l~~L~~L~Ls~n~i~~~~~~~~~~l---~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~  175 (527)
                      +.++.+.++..+-..+.   .-..+.+++|+.|.....++..+..+   .-|++++.+...+..   .-+..+..-.+|.
T Consensus       192 l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~  271 (553)
T KOG4242|consen  192 LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLT  271 (553)
T ss_pred             cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccc
Confidence            56666665543222111   12357899999998877666544322   347788887776641   1112233456788


Q ss_pred             EEecccCCCCCC----cch---hhhc--cccchhhcccccccccccccc--CC----C-CcceEeccCCcCCccCC--CC
Q 045837          176 YLDLRYNNFEGE----VPR---ELFK--MKLDAIFLNNNRFSSWIPETI--GE----S-TVSVVTFAHNNFSGCVP--RS  237 (527)
Q Consensus       176 ~L~Ls~n~i~~~----~p~---~~~~--~~L~~L~L~~n~l~~~~~~~~--~~----~-~L~~L~L~~n~l~~~~~--~~  237 (527)
                      +.+++.|..+-.    +..   ..+.  .++ +|++.+++........+  +.    . .-.++++..|...+.--  ..
T Consensus       272 ~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleac  350 (553)
T KOG4242|consen  272 FGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEAC  350 (553)
T ss_pred             hhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhcc
Confidence            888888865411    111   1122  356 77877777654433322  11    1 12355666655553211  11


Q ss_pred             CCCCCCCcEEEcccCCCCCCChhh--ccCCCCCCEEEccCCccccc-CCccc--------CCCCCCcEEeccCCCCCCcc
Q 045837          238 IGNMPNVNEIILSNNDLMGCLPSE--IGWLKKLTVFDASSNSFYGS-VPQSF--------SSLESIHRLVLSYNQLTGYV  306 (527)
Q Consensus       238 l~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~Ls~n~l~~~-~p~~~--------~~l~~L~~L~Ls~N~l~~~~  306 (527)
                      +.+ ..+++|.++.|++.+.....  +..-+.++.+++.+-.-..+ +....        ....-+..+.++.|.+....
T Consensus       351 i~g-~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l  429 (553)
T KOG4242|consen  351 IFG-QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGL  429 (553)
T ss_pred             ccc-eeeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccH
Confidence            222 35999999999988765433  33456778888766432111 11111        11234678889999887543


Q ss_pred             h---hhhhCCCCCcEEEecCcccCCCC----CCCCCCCCCCceecCCCCCCC
Q 045837          307 S---EQICKLPNINNFTFSYNYFQGLG----NECIPGSKEGGVFDDTSNCLA  351 (527)
Q Consensus       307 ~---~~l~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~l~~N~l~  351 (527)
                      -   ..+...+.+..|++++|......    +........++.+..+.|...
T Consensus       430 ~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~  481 (553)
T KOG4242|consen  430 ESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE  481 (553)
T ss_pred             HHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence            2   23456678999999999776432    222333334555555555443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.60  E-value=0.36  Score=28.07  Aligned_cols=19  Identities=37%  Similarity=0.574  Sum_probs=10.3

Q ss_pred             CcccEEecccCCCCCCcchh
Q 045837          172 TSLRYLDLRYNNFEGEVPRE  191 (527)
Q Consensus       172 ~~L~~L~Ls~n~i~~~~p~~  191 (527)
                      .+|++|+|++|.|+ .++..
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            45556666666555 44443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.60  E-value=0.36  Score=28.07  Aligned_cols=19  Identities=37%  Similarity=0.574  Sum_probs=10.3

Q ss_pred             CcccEEecccCCCCCCcchh
Q 045837          172 TSLRYLDLRYNNFEGEVPRE  191 (527)
Q Consensus       172 ~~L~~L~Ls~n~i~~~~p~~  191 (527)
                      .+|++|+|++|.|+ .++..
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            45556666666555 44443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.85  E-value=0.66  Score=26.92  Aligned_cols=13  Identities=46%  Similarity=0.580  Sum_probs=6.0

Q ss_pred             CCcEEeccCCCCC
Q 045837          291 SIHRLVLSYNQLT  303 (527)
Q Consensus       291 ~L~~L~Ls~N~l~  303 (527)
                      +|++|+|++|+|+
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.85  E-value=0.66  Score=26.92  Aligned_cols=13  Identities=46%  Similarity=0.580  Sum_probs=6.0

Q ss_pred             CCcEEeccCCCCC
Q 045837          291 SIHRLVLSYNQLT  303 (527)
Q Consensus       291 ~L~~L~Ls~N~l~  303 (527)
                      +|++|+|++|+|+
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.75  E-value=0.19  Score=28.60  Aligned_cols=13  Identities=46%  Similarity=0.554  Sum_probs=4.7

Q ss_pred             CCcEEeccCCCCC
Q 045837          291 SIHRLVLSYNQLT  303 (527)
Q Consensus       291 ~L~~L~Ls~N~l~  303 (527)
                      +|++|+|++|+|+
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            3444444444443

...

>PRK09718 hypothetical protein; Validated

Probab=81.27  E-value=2.6  Score=43.45  Aligned_cols=31  Identities=10%  Similarity=-0.012  Sum_probs=16.6

Q ss_pred             cEEEcccCCCCCCChhhccCCCCCCEEEccCCccc
Q 045837          245 NEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFY  279 (527)
Q Consensus       245 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~  279 (527)
                      +...+.++.+.+.   .| .-..|+.+|++.|.+.
T Consensus       211 Kka~F~~cDLt~A---dF-~qT~LkgVDFSdC~Le  241 (512)
T PRK09718        211 KEISFIKSNLTAV---MF-DHVRISTGNFKDCITE  241 (512)
T ss_pred             CCCEEeCCCCCCC---Cc-CCCcCCCccccccccc
Confidence            4455555555422   12 1356677777777665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	527
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-19
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-19
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-16
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-07

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 115/234 (49%), Gaps = 6/234 (2%)
Query: 101 VVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIP-ESLSNWKLIYEFDVSNNR 159
            + G+DL+GN   G  P   G  S L    ++SN F G +P ++L   + +   D+S N 
Sbjct: 292 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 351
Query: 160 LVGSFPNVCLSWT-SLRYLDLRYNNFEGEVPRELF---KMKLDAIFLNNNRFSSWIPETI 215
             G  P    + + SL  LDL  NNF G +   L    K  L  ++L NN F+  IP T+
Sbjct: 352 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 411
Query: 216 GE-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDAS 274
              S +  +  + N  SG +P S+G++  + ++ L  N L G +P E+ ++K L      
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 471
Query: 275 SNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQG 328
            N   G +P   S+  +++ + LS N+LTG + + I +L N+     S N F G
Sbjct: 472 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 525

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 92.0 bits (227), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 115/234 (49%), Gaps = 6/234 (2%)
Query: 101 VVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIP-ESLSNWKLIYEFDVSNNR 159
            + G+DL+GN   G  P   G  S L    ++SN F G +P ++L   + +   D+S N 
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 160 LVGSFPNVCLSWT-SLRYLDLRYNNFEGEVPRELF---KMKLDAIFLNNNRFSSWIPETI 215
             G  P    + + SL  LDL  NNF G +   L    K  L  ++L NN F+  IP T+
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414
Query: 216 GE-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDAS 274
              S +  +  + N  SG +P S+G++  + ++ L  N L G +P E+ ++K L      
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
Query: 275 SNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQG 328
            N   G +P   S+  +++ + LS N+LTG + + I +L N+     S N F G
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 93/213 (43%), Gaps = 7/213 (3%)
Query: 98  NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSN 157
           N   + GI    N++ G  P  +  L+ L   ++      G IP+ LS  K +   D S 
Sbjct: 79  NFLYIGGI----NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134
Query: 158 NRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPREL--FKMKLDAIFLNNNRFSSWIPETI 215
           N L G+ P    S  +L  +    N   G +P     F     ++ ++ NR +  IP T 
Sbjct: 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194
Query: 216 GESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASS 275
               ++ V  + N   G      G+  N  +I L+ N L   L  ++G  K L   D  +
Sbjct: 195 ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRN 253
Query: 276 NSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSE 308
           N  YG++PQ  + L+ +H L +S+N L G + +
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 20/157 (12%)
Query: 190 RELFKMKLDAIFLNNNRFSSWIPET----------IGESTVSVVTFAHNNFSGC------ 233
           + L ++K D    N    SSW+P T          + ++        + + SG       
Sbjct: 9   QALLQIKKD--LGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPY 66
Query: 234 -VPRSIGNMPNVNEIILSN-NDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLES 291
            +P S+ N+P +N + +   N+L+G +P  I  L +L     +  +  G++P   S +++
Sbjct: 67  PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 292 IHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQG 328
           +  L  SYN L+G +   I  LPN+   TF  N   G
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	527
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-50
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-28
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-49
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-46
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-42
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-13
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-13
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-09
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	1e-12
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	6e-12
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-10
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	5e-09
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	6e-09
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	1e-08
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-07
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	1e-12
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	7e-12
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	1e-10
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	3e-08
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	1e-07
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-07
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	4e-12
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	9e-08
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	6e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-11
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	1e-11
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	4e-11
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	1e-09
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-09
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-09
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-07
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-06
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	6e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-05
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-10
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	7e-10
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	2e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-05
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	8e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	3e-10
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	6e-09
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	7e-08
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	8e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	1e-09
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	4e-09
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	5e-09
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	1e-07
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	2e-06
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	8e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-04
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	2e-09
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	9e-09
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	6e-08
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	4e-09
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	1e-07
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	6e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-09
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	9e-09
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-07
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	4e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-05
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	1e-07
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	7e-07
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	6e-06
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	2e-07
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	1e-04
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	5e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	3e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	1e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	1e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	4e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	4e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-06
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	1e-05
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	1e-05
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	2e-04
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	2e-05
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	3e-05
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	3e-05
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	5e-05
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	7e-05
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	3e-05
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	4e-05
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	5e-05
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	6e-05
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	3e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	1e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	7e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-04
2es4_D	332	Lipase chaperone; protein-protein complex, steric	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	3e-04
2wd6_A	349	Agglutinin receptor; cell adhesion, secreted, V-re	3e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	4e-04
3vf0_A	283	Vinculin, metavinculin; cytoskeletal F-actin bindi	5e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04
1x9d_A	538	Endoplasmic reticulum mannosyl-oligosaccharide 1,	9e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  173 bits (441), Expect = 4e-50
 Identities = 63/277 (22%), Positives = 120/277 (43%), Gaps = 21/277 (7%)

Query: 76  NWV-GTDVC--SYYGVFCAPAPDNSNITVVAGIDLNGNDIAG--YFPAELGWLSDLALFH 130
           +W+  TD C  ++ GV C      +    V  +DL+G ++      P+ L  L  L   +
Sbjct: 26  SWLPTTDCCNRTWLGVLCDTD---TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLY 82

Query: 131 V-NSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVP 189
           +   N   G IP +++    ++   +++  + G+ P+      +L  LD  YN   G +P
Sbjct: 83  IGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142

Query: 190 RELFKM-KLDAIFLNNNRFSSWIPETIGEST--VSVVTFAHNNFSGCVPRSIGNMPNVNE 246
             +  +  L  I  + NR S  IP++ G  +   + +T + N  +G +P +  N+ N+  
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAF 201

Query: 247 IILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYV 306
           + LS N L G      G  K       + NS    +       ++++ L L  N++ G +
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTL 260

Query: 307 SEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVF 343
            + + +L  +++   S+N   G     IP   +GG  
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGE----IP---QGGNL 290

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  153 bits (388), Expect = 2e-42
 Identities = 47/221 (21%), Positives = 87/221 (39%), Gaps = 26/221 (11%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           + +   +++G  P  L  +  L     + N   G +P S+S+   +       NR+ G+ 
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 165 PNVCLSWTSL-RYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVV 223
           P+   S++ L   + +  N   G++P     + L  + L                     
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL--------------------- 204

Query: 224 TFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVP 283
             + N   G      G+  N  +I L+ N L   L   +G  K L   D  +N  YG++P
Sbjct: 205 --SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLP 261

Query: 284 QSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYN 324
           Q  + L+ +H L +S+N L G + +    L   +   ++ N
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  113 bits (285), Expect = 4e-28
 Identities = 38/191 (19%), Positives = 74/191 (38%), Gaps = 26/191 (13%)

Query: 141 PESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAI 200
           P +LS+W      D  N   +G   +       +  LDL   N     P           
Sbjct: 21  PTTLSSWLP--TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP----------- 67

Query: 201 FLNNNRFSSWIPETIGE-STVSVVTFAH-NNFSGCVPRSIGNMPNVNEIILSNNDLMGCL 258
                     IP ++     ++ +     NN  G +P +I  +  ++ + +++ ++ G +
Sbjct: 68  ----------IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI 117

Query: 259 PSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINN 318
           P  +  +K L   D S N+  G++P S SSL ++  +    N+++G + +       +  
Sbjct: 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177

Query: 319 F-TFSYNYFQG 328
             T S N   G
Sbjct: 178 SMTISRNRLTG 188

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 80.7 bits (200), Expect = 6e-17
 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 3/126 (2%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           + ++ N + G  P     L+ LA   ++ N   G       + K   +  ++ N L    
Sbjct: 179 MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237

Query: 165 PNVCLSWTSLRYLDLRYNNFEGEVPRELFKMK-LDAIFLNNNRFSSWIPETIGESTVSVV 223
             V LS  +L  LDLR N   G +P+ L ++K L ++ ++ N     IP+        V 
Sbjct: 238 GKVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296

Query: 224 TFAHNN 229
            +A+N 
Sbjct: 297 AYANNK 302

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  180 bits (458), Expect = 3e-49
 Identities = 60/230 (26%), Positives = 106/230 (46%), Gaps = 6/230 (2%)

Query: 105 IDLNGNDIAGYFPAE-LGWLSDLALFHVNSNRFCGIIPESLSNWKL-IYEFDVSNNRLVG 162
           + L+ N+ +G  P + L  +  L +  ++ N F G +PESL+N    +   D+S+N   G
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382

Query: 163 SFPNV--CLSWTSLRYLDLRYNNFEGEVPRELFKMK-LDAIFLNNNRFSSWIPETIGE-S 218
                       +L+ L L+ N F G++P  L     L ++ L+ N  S  IP ++G  S
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442

Query: 219 TVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSF 278
            +  +    N   G +P+ +  +  +  +IL  NDL G +PS +     L     S+N  
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502

Query: 279 YGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQG 328
            G +P+    LE++  L LS N  +G +  ++    ++     + N F G
Sbjct: 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  173 bits (442), Expect = 6e-47
 Identities = 69/264 (26%), Positives = 107/264 (40%), Gaps = 9/264 (3%)

Query: 92  PAPDNSNITVVAGIDLNGNDIAGYFPAELGWLS-DLALFHVNSNRFCGIIPESLSNWKL- 149
           P      +  +  +DL+ N+ +G  P  L  LS  L    ++SN F G I  +L      
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394

Query: 150 -IYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMK-LDAIFLNNNRF 207
            + E  + NN   G  P    + + L  L L +N   G +P  L  +  L  + L  N  
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454

Query: 208 SSWIPETIGE-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLK 266
              IP+ +    T+  +    N+ +G +P  + N  N+N I LSNN L G +P  IG L+
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514

Query: 267 KLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYF 326
            L +   S+NSF G++P       S+  L L+ N   G +   + K         + N+ 
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFI 570

Query: 327 QGLGNECIPGSKEGGVFDDTSNCL 350
            G     I             N L
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLL 594

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  173 bits (440), Expect = 1e-46
 Identities = 64/264 (24%), Positives = 103/264 (39%), Gaps = 31/264 (11%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           + L+ ND+ G  P+ L   ++L    +++NR  G IP+ +   + +    +SNN   G+ 
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530

Query: 165 PNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDA-----------------------IF 201
           P       SL +LDL  N F G +P  +FK                              
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590

Query: 202 LNNNRFSSWIPETIGE-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPS 260
            N   F     E +   ST +        + G    +  N  ++  + +S N L G +P 
Sbjct: 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650

Query: 261 EIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFT 320
           EIG +  L + +   N   GS+P     L  ++ L LS N+L G + + +  L  +    
Sbjct: 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710

Query: 321 FSYNYFQGLGNECIPGSKEGGVFD 344
            S N   G     IP   E G F+
Sbjct: 711 LSNNNLSG----PIP---EMGQFE 727

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  158 bits (403), Expect = 9e-42
 Identities = 56/244 (22%), Positives = 105/244 (43%), Gaps = 11/244 (4%)

Query: 92  PAPDNSNITVVAGIDLNGNDIAGYFPAELGW---LSDLALFHVNSNRFCGIIPESLSNWK 148
                  +  +  +DL+ N I+G             +L    ++ N+  G +   +S   
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCV 200

Query: 149 LIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM-KLDAIFLNNNRF 207
            +   DVS+N      P +    ++L++LD+  N   G+  R +    +L  + +++N+F
Sbjct: 201 NLEFLDVSSNNFSTGIPFLG-DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259

Query: 208 SSWIPETIGESTVSVVTFAHNNFSGCVPRSI-GNMPNVNEIILSNNDLMGCLPSEIGWLK 266
              IP    +S +  ++ A N F+G +P  + G    +  + LS N   G +P   G   
Sbjct: 260 VGPIPPLPLKS-LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318

Query: 267 KLTVFDASSNSFYGSVP-QSFSSLESIHRLVLSYNQLTGYVSEQICKL-PNINNFTFSYN 324
            L     SSN+F G +P  +   +  +  L LS+N+ +G + E +  L  ++     S N
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378

Query: 325 YFQG 328
            F G
Sbjct: 379 NFSG 382

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  157 bits (400), Expect = 2e-41
 Identities = 60/292 (20%), Positives = 111/292 (38%), Gaps = 40/292 (13%)

Query: 76  NW-VGTDVCSYYGVFC--------------------APAPDNSNITVVAGIDLNGNDIAG 114
           +W    + C++ GV C                    A +    ++T +  + L+ + I G
Sbjct: 32  DWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING 91

Query: 115 YFPAELGWLSDLALFHVNSNRFCGIIPE--SLSNWKLIYEFDVSNNRLVGSFP-NVCLSW 171
                    + L    ++ N   G +    SL +   +   +VS+N L      +  L  
Sbjct: 92  SVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL 150

Query: 172 TSLRYLDLRYNNFEGEVPRELFKM----KLDAIFLNNNRFSSWIPETIGEST-VSVVTFA 226
            SL  LDL  N+  G             +L  + ++ N+ S  +   +     +  +  +
Sbjct: 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVS 208

Query: 227 HNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSF 286
            NNFS  +P  +G+   +  + +S N L G     I    +L + + SSN F G +P   
Sbjct: 209 SNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-- 265

Query: 287 SSLESIHRLVLSYNQLTGYVSEQIC-KLPNINNFTFSYNYFQGLGNECIPGS 337
             L+S+  L L+ N+ TG + + +      +     S N+F G     +P  
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG----AVPPF 313

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.7 bits (187), Expect = 1e-14
 Identities = 29/109 (26%), Positives = 51/109 (46%)

Query: 97  SNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVS 156
            N   +  +D++ N ++GY P E+G +  L + ++  N   G IP+ + + + +   D+S
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688

Query: 157 NNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNN 205
           +N+L G  P    + T L  +DL  NN  G +P              NN
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN 737

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.0 bits (180), Expect = 1e-13
 Identities = 25/157 (15%), Positives = 55/157 (35%), Gaps = 23/157 (14%)

Query: 97  SNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVS 156
           + ++     ++      G+          +    ++ N   G IP+ + +   ++  ++ 
Sbjct: 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664

Query: 157 NNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIG 216
           +N + GS P+       L  LDL  N  +G +P+ +  +      L              
Sbjct: 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT----ML-------------- 706

Query: 217 ESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNND 253
               + +  ++NN SG +P  +G           NN 
Sbjct: 707 ----TEIDLSNNNLSGPIP-EMGQFETFPPAKFLNNP 738

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  128 bits (323), Expect = 1e-31
 Identities = 43/234 (18%), Positives = 88/234 (37%), Gaps = 9/234 (3%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           +D+  N I+   P     L  L + ++  N    +  ++ +    + E  + +N +    
Sbjct: 54  LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113

Query: 165 PNVCLSWTSLRYLDLRYNNFEGEVPRELFKM-KLDAIFLNNNRFSSWIPETIGE---STV 220
            N  +   +L  LDL +N           ++  L  + L+NN+  +   E +     S++
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173

Query: 221 SVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGW---LKKLTVFDASSNS 277
             +  + N      P     +  +  + L+N  L   L  ++        +     S++ 
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

Query: 278 FYGSVPQSFSSLE--SIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGL 329
              +   +F  L+  ++  L LSYN L    ++    LP +  F   YN  Q L
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  122 bits (308), Expect = 1e-29
 Identities = 44/251 (17%), Positives = 78/251 (31%), Gaps = 18/251 (7%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSN---------RFCGIIPESLSNWKLIYEFDV 155
             L  N+I   F   L  L ++   ++  +             I   S    K +   ++
Sbjct: 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336

Query: 156 SNNRLVGSFPNVCLSWTSLRYLDLRYNNFE-----GEVPRELFKMKLDAIFLNNNRFSSW 210
            +N + G   N+     +L+YL L  +         E    L    L  + L  N+ S  
Sbjct: 337 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396

Query: 211 IPETIGE-STVSVVTFAHNNFSGCVPRS-IGNMPNVNEIILSNNDLMGCLPSEIGWLKKL 268
             +       + V+    N     +       + N+ EI LS N  +    +    +  L
Sbjct: 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 456

Query: 269 TVFDASSNSFYG--SVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYF 326
                   +     S P  F  L ++  L LS N +     + +  L  +      +N  
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516

Query: 327 QGLGNECIPGS 337
             L     PG 
Sbjct: 517 ARLWKHANPGG 527

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  121 bits (305), Expect = 2e-29
 Identities = 45/252 (17%), Positives = 90/252 (35%), Gaps = 22/252 (8%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           + L  N I            +L    ++ N        +    + + E  +SNN++    
Sbjct: 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161

Query: 165 PNV--CLSWTSLRYLDLRYNNFEGEVPRELFKM-KLDAIFLNNNRFSSWIPETIGE---- 217
                  + +SL+ L+L  N  +   P     + +L  +FLNN +    + E +      
Sbjct: 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN 221

Query: 218 STVSVVTFAHNNFSGCVPRSIGNMPNVN--EIILSNNDLMGCLPSEIGWLKKLTVFDASS 275
           +++  ++ +++  S     +   +   N   + LS N+L         WL +L  F    
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281

Query: 276 NSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTF-----------SYN 324
           N+       S   L ++  L L  +     +S  +  LP I++F+F             N
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS--LASLPKIDDFSFQWLKCLEHLNMEDN 339

Query: 325 YFQGLGNECIPG 336
              G+ +    G
Sbjct: 340 DIPGIKSNMFTG 351

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  119 bits (301), Expect = 9e-29
 Identities = 42/239 (17%), Positives = 86/239 (35%), Gaps = 16/239 (6%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIP-ESLSNWKLIYEFDVSNNRLVGS 163
           ++L  N I+        WL  L +  +  N     +  +     + I+E  +S N+ +  
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445

Query: 164 FPNVCLSWTSLRYLDLRYNNFEG--EVPRELFKM-KLDAIFLNNNRFSSWIPETIGE-ST 219
             N      SL+ L LR    +     P     +  L  + L+NN  ++   + +     
Sbjct: 446 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505

Query: 220 VSVVTFAHNNFS--------GCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVF 271
           + ++   HNN +        G     +  + +++ + L +N            L +L + 
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565

Query: 272 DASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICK--LPNINNFTFSYNYFQG 328
           D   N+        F++  S+  L L  N +T  V +++      N+      +N F  
Sbjct: 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS-VEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  118 bits (298), Expect = 2e-28
 Identities = 43/251 (17%), Positives = 80/251 (31%), Gaps = 17/251 (6%)

Query: 106 DLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFP 165
            ++   +         WL  L   ++  N   GI     +    +    +SN+       
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370

Query: 166 N----VCLSWTSLRYLDLRYNNFEGEVPRELFKMK-LDAIFLNNNRFSSWIPETI--GES 218
                V L+ + L  L+L  N            +  L+ + L  N     +      G  
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE 430

Query: 219 TVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC--LPSEIGWLKKLTVFDASSN 276
            +  +  ++N +      S   +P++  ++L    L      PS    L+ LT+ D S+N
Sbjct: 431 NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490

Query: 277 SFYGSVPQSFSSLESIHRLVLSYNQLT--------GYVSEQICKLPNINNFTFSYNYFQG 328
           +           LE +  L L +N L         G     +  L +++      N F  
Sbjct: 491 NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE 550

Query: 329 LGNECIPGSKE 339
           +  E      E
Sbjct: 551 IPVEVFKDLFE 561

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  112 bits (283), Expect = 2e-26
 Identities = 52/255 (20%), Positives = 92/255 (36%), Gaps = 16/255 (6%)

Query: 94  PDN--SNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIY 151
           PD+  +NITV   ++L  N +     A     S L    V  N    + PE      ++ 
Sbjct: 20  PDDLPTNITV---LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 76

Query: 152 EFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM-KLDAIFLNNNRFSSW 210
             ++ +N L           T+L  L L  N+ +        K   L  + L++N  SS 
Sbjct: 77  VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136

Query: 211 IPETIGEST-VSVVTFAHNNFSGCVPRSIGNMPNVN--EIILSNNDLMGCLPSEIGWLKK 267
              T  +   +  +  ++N         +    N +  ++ LS+N +    P     + +
Sbjct: 137 KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 196

Query: 268 LTVFDASSNSFYGSVPQSFS---SLESIHRLVLSYNQLTGYVSEQI---CKLPNINNFTF 321
           L     ++     S+ +      +  SI  L LS +QL+   S       K  N+     
Sbjct: 197 LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST-TSNTTFLGLKWTNLTMLDL 255

Query: 322 SYNYFQGLGNECIPG 336
           SYN    +GN+    
Sbjct: 256 SYNNLNVVGNDSFAW 270

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  112 bits (282), Expect = 2e-26
 Identities = 32/242 (13%), Positives = 76/242 (31%), Gaps = 17/242 (7%)

Query: 105 IDLNGNDIAGYFPAELGW--LSDLALFHVN--SNRFCGIIPESLSNWKLIYEFDVSNNRL 160
           + L+ +  +        +  L+   L  +N   N+   I  ++ S    +   D+  N +
Sbjct: 358 LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417

Query: 161 VGSFPNVCLS-WTSLRYLDLRYNNFEGEVPRELFKM-KLDAIFLNNNRFSS--WIPETIG 216
                        ++  + L YN +          +  L  + L      +    P    
Sbjct: 418 GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477

Query: 217 E-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDL--------MGCLPSEIGWLKK 267
               ++++  ++NN +      +  +  +  + L +N+L         G     +  L  
Sbjct: 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 537

Query: 268 LTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQ 327
           L + +  SN F     + F  L  +  + L  N L    +       ++ +     N   
Sbjct: 538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597

Query: 328 GL 329
            +
Sbjct: 598 SV 599

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  108 bits (273), Expect = 3e-25
 Identities = 42/254 (16%), Positives = 82/254 (32%), Gaps = 22/254 (8%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLAL--FHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVG 162
           + L+ N I      EL   ++ +L    ++SN+     P        ++   ++N +L  
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209

Query: 163 SFPNVC---LSWTSLRYLDLRYNNFEGEVP---RELFKMKLDAIFLNNNRFSSWIPETIG 216
           S        L+ TS+R L L  +            L    L  + L+ N  +    ++  
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 269

Query: 217 EST-VSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCL---------PSEIGWLK 266
               +      +NN       S+  + NV  + L  +     +              WLK
Sbjct: 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329

Query: 267 KLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYV--SEQICKLPNINNFT--FS 322
            L   +   N   G     F+ L ++  L LS +  +     +E    L +        +
Sbjct: 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389

Query: 323 YNYFQGLGNECIPG 336
            N    + ++    
Sbjct: 390 KNKISKIESDAFSW 403

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  103 bits (260), Expect = 1e-23
 Identities = 40/247 (16%), Positives = 79/247 (31%), Gaps = 33/247 (13%)

Query: 96  NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDV 155
            +N+T+   +DL+ N++         WL  L  F +  N    +   SL     +   ++
Sbjct: 247 WTNLTM---LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303

Query: 156 SNNRLVGSF---------PNVCLSWTSLRYLDLRYNNFEGEVPRELFKM-KLDAIFLNNN 205
             +    S                   L +L++  N+  G        +  L  + L+N+
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363

Query: 206 RFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWL 265
             S             + T  +  F       +      + + L+ N +         WL
Sbjct: 364 FTS-------------LRTLTNETFVSLAHSPL------HILNLTKNKISKIESDAFSWL 404

Query: 266 KKLTVFDASSNSFYGSVP-QSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYN 324
             L V D   N     +  Q +  LE+I  + LSYN+           +P++        
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464

Query: 325 YFQGLGN 331
             + + +
Sbjct: 465 ALKNVDS 471

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 95.1 bits (237), Expect = 8e-21
 Identities = 38/185 (20%), Positives = 70/185 (37%), Gaps = 7/185 (3%)

Query: 154 DVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM-KLDAIFLNNNRFSSWIP 212
           D S+ +L    P+     T++  L+L +N           +  +L ++ +  N  S   P
Sbjct: 10  DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 66

Query: 213 ETIGE-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVF 271
           E   +   + V+   HN  S    ++     N+ E+ L +N +     +     K L   
Sbjct: 67  ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126

Query: 272 DASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSE--QICKLPNINNFTFSYNYFQGL 329
           D S N    +   +   LE++  L+LS N++    SE   I    ++     S N  +  
Sbjct: 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF 186

Query: 330 GNECI 334
              C 
Sbjct: 187 SPGCF 191

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 90.8 bits (226), Expect = 2e-19
 Identities = 33/161 (20%), Positives = 55/161 (34%), Gaps = 7/161 (4%)

Query: 172 TSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETIGE-STVSVVTFAHN 228
            S    D  +     +VP +L      L+   L +N+            S ++ +    N
Sbjct: 4   VSHEVADCSHLKLT-QVPDDLPTNITVLN---LTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 229 NFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSS 288
             S   P     +P +  + L +N+L         +   LT     SNS        F  
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 289 LESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGL 329
            +++  L LS+N L+        +L N+     S N  Q L
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  126 bits (319), Expect = 4e-31
 Identities = 44/261 (16%), Positives = 83/261 (31%), Gaps = 31/261 (11%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGI--------IPESLSNWKLIYEFDVS 156
           +++         P  L  L ++ L +V  NR                    + I    + 
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313

Query: 157 NNRL-VGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM-KLDAIFLNNNRFSSWIPET 214
            N L              L  L+  YN  EG++P       KL ++ L  N+ +  IP  
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPAN 371

Query: 215 IGESTVS--VVTFAHNNFSGCVPR--SIGNMPNVNEIILSNNDLMGC-------LPSEIG 263
               T     ++FAHN     +P      ++  ++ I  S N++          L     
Sbjct: 372 FCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430

Query: 264 WLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTG-------YVSEQICKLPNI 316
               ++  + S+N       + FS+   +  + L  N LT          +E       +
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490

Query: 317 NNFTFSYNYFQGLGNECIPGS 337
            +    +N    L ++    +
Sbjct: 491 TSIDLRFNKLTKLSDDFRATT 511

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  124 bits (313), Expect = 2e-30
 Identities = 41/298 (13%), Positives = 94/298 (31%), Gaps = 53/298 (17%)

Query: 75  GNW-VGTDVCSYY---GVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFH 130
            NW    ++  +    GV        ++   V G+ L G   +G  P  +G L++L +  
Sbjct: 58  ANWNFNKELDMWGAQPGVSL------NSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLA 111

Query: 131 VNSNRFCG----IIPESLSNWKLIYEFDVSNNRLVGSFPNVC--LSWTSLRYLDLRYNNF 184
           + S+          P+ +S      +          +F +      ++ L    +  +  
Sbjct: 112 LGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ 171

Query: 185 EG-----------------------EVPRELFKM-KLDAIFLNNNRFSSWIPETIGESTV 220
           +                         V + + ++ KL   ++ N+ F +       E+  
Sbjct: 172 QKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENE- 230

Query: 221 SVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSF-- 278
                 +            N+ ++ ++ + N   +  LP+ +  L ++ + + + N    
Sbjct: 231 ---NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

Query: 279 ------YGSVPQSFSSLESIHRLVLSYNQL-TGYVSEQICKLPNINNFTFSYNYFQGL 329
                            E I  + + YN L T  V   + K+  +      YN  +G 
Sbjct: 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK 345

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  121 bits (306), Expect = 2e-29
 Identities = 44/267 (16%), Positives = 81/267 (30%), Gaps = 34/267 (12%)

Query: 105 IDLNGNDIAGYFPAEL-GWLSDLALFHVNSNRFCGIIPESLSNWKL--IYEFDVSNNRLV 161
           ++L  N I    PA   G+   +       N+   I P       +  +   D S N + 
Sbjct: 358 LNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYI-PNIFDAKSVSVMSAIDFSYNEIG 415

Query: 162 G-------SFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM-KLDAIFLNNNRFSS---- 209
                             ++  ++L  N               L +I L  N  +     
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475

Query: 210 ---WIPETIGEST-VSVVTFAHNNFSGCVPRSI--GNMPNVNEIILSNNDLMGCLPSEIG 263
                 E    +  ++ +    N  +  +        +P +  I LS N      P++  
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL 533

Query: 264 WLKKLTVF------DASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNIN 317
               L  F      DA  N      P+  +   S+ +L +  N +   V+E+I   PNI+
Sbjct: 534 NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNIS 590

Query: 318 NFTFSYNYFQGLGNECIPGSKEGGVFD 344
                 N    +    +    E G++ 
Sbjct: 591 VLDIKDNPNISIDLSYVCPYIEAGMYM 617

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  120 bits (304), Expect = 3e-29
 Identities = 35/253 (13%), Positives = 75/253 (29%), Gaps = 32/253 (12%)

Query: 105 IDLNGNDIAGYFPAELGW--LSDLALFHVNSNRFCGI-------IPESLSNWKLIYEFDV 155
           +    N +    P       +S ++    + N    +       +  +      +   ++
Sbjct: 382 LSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440

Query: 156 SNNRLVGSFPNVCLSWTSLRYLDLRYNNFEG-------EVPRELFKMK-LDAIFLNNNRF 207
           SNN++      +  + + L  ++L  N           +          L +I L  N+ 
Sbjct: 441 SNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500

Query: 208 SSWIPETIGESTVSVVTF---AHNNFSGCVPRSIGNMPN------VNEIILSNNDLMGCL 258
           +  + +    +T+  +     ++N+FS   P    N          N+     N  +   
Sbjct: 501 TK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558

Query: 259 PSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINN 318
           P  I     LT     SN     V +      +I  L +  N         +C       
Sbjct: 559 PEGITLCPSLTQLQIGSNDI-RKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGM 615

Query: 319 FTFSYNYFQGLGN 331
           +   Y+  Q +  
Sbjct: 616 YMLFYDKTQDIRG 628

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 89.7 bits (223), Expect = 4e-19
 Identities = 26/206 (12%), Positives = 62/206 (30%), Gaps = 15/206 (7%)

Query: 135 RFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNV-CLSWTSLRYLDLRYNNFEGEVPRELF 193
              G   +  +NW    E D+      G+ P V   S   +  L L      G VP  + 
Sbjct: 48  SQQGFGTQPGANWNFNKELDMW-----GAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG 102

Query: 194 KM-KLDAIFLNNNRFS----SWIPETIGESTVSVVTFA-HNNFSGCVPRSIG--NMPNVN 245
           ++ +L+ + L ++        + P+ I  +           ++           +  ++ 
Sbjct: 103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI 162

Query: 246 EIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGY 305
           +  ++++     +        K T     SN+    V ++   L  + +  +  +     
Sbjct: 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAE 221

Query: 306 VSEQICKLPNINNFTFSYNYFQGLGN 331
              +  +  N               N
Sbjct: 222 NICEAWENENSEYAQQYKTEDLKWDN 247

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 74.7 bits (184), Expect = 3e-14
 Identities = 29/177 (16%), Positives = 56/177 (31%), Gaps = 21/177 (11%)

Query: 105 IDLNGN-------DIAGYFPAELGWLSDLALFHVNSNRFCGIIPE-SLSNWKLIYEFDVS 156
           I+L GN       +              L    +  N+   +  +   +    +   D+S
Sbjct: 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLS 521

Query: 157 NNRLVGSFPNVCLSWTSLRYLDLR------YNNFEGEVPRELFKM-KLDAIFLNNNRFSS 209
            N     FP   L+ ++L+   +R       N    E P  +     L  + + +N    
Sbjct: 522 YNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580

Query: 210 WIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNN---DLMGCLPSEIG 263
            + E I  + +SV+    N         +         +L  +   D+ GC   +I 
Sbjct: 581 -VNEKITPN-ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIK 635

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  124 bits (313), Expect = 2e-30
 Identities = 46/230 (20%), Positives = 83/230 (36%), Gaps = 8/230 (3%)

Query: 105 IDLNGNDIAGYFP-AELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGS 163
           +    N     F   +L  L  L L   N   F G   +S      +   D+S N ++  
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSR-NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388

Query: 164 FPNVCLSWTSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETIGE-STV 220
             N  L    L +LD +++N +      +F     L  + +++              S++
Sbjct: 389 SSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 221 SVVTFAHNNFSGCV-PRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFY 279
            V+  A N+F     P     + N+  + LS   L    P+    L  L V + S N+F+
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 280 GSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLP-NINNFTFSYNYFQG 328
                 +  L S+  L  S N +     +++   P ++     + N F  
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  119 bits (300), Expect = 8e-29
 Identities = 41/258 (15%), Positives = 85/258 (32%), Gaps = 28/258 (10%)

Query: 97  SNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIY----- 151
           + +T V+   L    I         +        + + +F       L + K +      
Sbjct: 279 NCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336

Query: 152 --------------EFDVSNNRL--VGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM 195
                           D+S N L   G         TSL+YLDL +N     +      +
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGL 395

Query: 196 -KLDAIFLNNNRFSSWIPETIGESTVSVVT--FAHNNFSGCVPRSIGNMPNVNEIILSNN 252
            +L+ +   ++        ++  S  +++    +H +           + ++  + ++ N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 253 DLMGCLPSEI-GWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQIC 311
                   +I   L+ LT  D S        P +F+SL S+  L +S+N      +    
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 515

Query: 312 KLPNINNFTFSYNYFQGL 329
            L ++    +S N+    
Sbjct: 516 CLNSLQVLDYSLNHIMTS 533

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  106 bits (266), Expect = 2e-24
 Identities = 38/246 (15%), Positives = 80/246 (32%), Gaps = 34/246 (13%)

Query: 94  PDN--SNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIY 151
           PDN   +      +DL+ N +            +L +  ++      I   +  +   + 
Sbjct: 23  PDNLPFSTKN---LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 152 EFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMK-LDAIFLNNNRFSSW 210
              ++ N +           +SL+ L     N        +  +K L  + + +N     
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-- 137

Query: 211 IPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTV 270
                               S  +P    N+ N+  + LS+N +     +++  L ++ +
Sbjct: 138 --------------------SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 271 F----DASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICK-LPNINNFTFSYNY 325
                D S N      P +F  +  +H+L L  N  +  V +   + L  +         
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 326 FQGLGN 331
           F+  GN
Sbjct: 237 FRNEGN 242

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  103 bits (258), Expect = 2e-23
 Identities = 36/237 (15%), Positives = 83/237 (35%), Gaps = 12/237 (5%)

Query: 107 LNGNDIAGYFPAELGWLSDLALFHVNSNR---FCGIIPESLSNWKLIYEFDVSNNRLVGS 163
            N  ++  +  + L  L +L +          +   I +  +    +  F + +  +   
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 164 FPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVV 223
                      ++L+L    F      +L  +K   +   +N+  +   E +   ++  +
Sbjct: 298 KDFSYNF--GWQHLELVNCKFGQFPTLKLKSLKR--LTFTSNKGGNAFSE-VDLPSLEFL 352

Query: 224 TFAHN--NFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGS 281
             + N  +F GC  +S     ++  + LS N ++  + S    L++L   D   ++    
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQM 411

Query: 282 VPQS-FSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGS 337
              S F SL ++  L +S+       +     L ++     + N FQ      I   
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.8 bits (187), Expect = 1e-14
 Identities = 24/128 (18%), Positives = 43/128 (33%), Gaps = 2/128 (1%)

Query: 202 LNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSE 261
                F   IP+ +  ST ++   + N        S  + P +  + LS  ++       
Sbjct: 14  CMELNFYK-IPDNLPFSTKNLD-LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71

Query: 262 IGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTF 321
              L  L+    + N        +FS L S+ +LV     L    +  I  L  +     
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 322 SYNYFQGL 329
           ++N  Q  
Sbjct: 132 AHNLIQSF 139

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 3/108 (2%)

Query: 227 HNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSF 286
             NF   +P ++    +   + LS N L            +L V D S          ++
Sbjct: 16  ELNFYK-IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 287 SSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECI 334
            SL  +  L+L+ N +          L ++            L N  I
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 24/139 (17%), Positives = 43/139 (30%), Gaps = 21/139 (15%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           +DL+   +    P     LS L + +++ N F  +          +   D S N ++ S 
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534

Query: 165 PNVCLSW-TSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVV 223
                 + +SL +L+L  N+F                   +  F  WI +         +
Sbjct: 535 KQELQHFPSSLAFLNLTQNDFACT--------------CEHQSFLQWIKDQ------RQL 574

Query: 224 TFAHNNFSGCVPRSIGNMP 242
                      P     MP
Sbjct: 575 LVEVERMECATPSDKQGMP 593

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  123 bits (309), Expect = 1e-29
 Identities = 41/295 (13%), Positives = 87/295 (29%), Gaps = 48/295 (16%)

Query: 76  NW-VGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSN 134
           NW    ++  +         +N  +T    + L G    G  P  +G L++L +    ++
Sbjct: 301 NWNFNKELDMWGDQPGVDLDNNGRVTG---LSLAGFGAKGRVPDAIGQLTELKVLSFGTH 357

Query: 135 RFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSW-TSLRYLDLRYN----------- 182
                              +   +R+   +  + L +   L   DL  +           
Sbjct: 358 SETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI 417

Query: 183 -----------------NFEGEVPRELFKM-KLDAIFLNNNRFSSWIPETIGESTVSVVT 224
                            N    + + + ++ KL  I+  N+ F+        E       
Sbjct: 418 KKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA----N 473

Query: 225 FAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYG---- 280
             +         S  N+ ++ ++ L N   M  LP  +  L +L   + + N        
Sbjct: 474 SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQL 533

Query: 281 -----SVPQSFSSLESIHRLVLSYNQLTGY-VSEQICKLPNINNFTFSYNYFQGL 329
                 +     +   I    + YN L  +  S  + K+  +      +N  + L
Sbjct: 534 KADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL 588

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  117 bits (295), Expect = 6e-28
 Identities = 45/276 (16%), Positives = 84/276 (30%), Gaps = 54/276 (19%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGI---------IPESLSNWKLIYEFDV 155
           ++L         P  L  L +L   ++  NR             + +       I  F +
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555

Query: 156 SNNRLVGSFPNVCLS-----------------------WTSLRYLDLRYNNFEGEVPREL 192
             N L     +  L                           L  L L YN  E E+P + 
Sbjct: 556 GYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDF 614

Query: 193 FKM--KLDAIFLNNNRFSSWIPETIGESTVS---VVTFAHNNFSG-----CVPRSIGNMP 242
                +++ +  ++N+    IP      +V     V F++N                   
Sbjct: 615 CAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673

Query: 243 NVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSF-------YGSVPQSFSSLESIHRL 295
           N + + LS N++             ++    S+N               ++ +   +  +
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI 733

Query: 296 VLSYNQLTGYVSEQI--CKLPNINNFTFSYNYFQGL 329
            L +N+LT  +S+      LP ++N   SYN F   
Sbjct: 734 DLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSSF 768

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  114 bits (286), Expect = 7e-27
 Identities = 38/241 (15%), Positives = 74/241 (30%), Gaps = 28/241 (11%)

Query: 105 IDLNGNDIAGYFPAE--LGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVG 162
             +  N++   FPA   L  +  L L     N+    +         + +  +  N++  
Sbjct: 553 FYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKV-RHLEA-FGTNVKLTDLKLDYNQIEE 609

Query: 163 SFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM---KLDAIFLNNNRFSSWIPETIGES- 218
              + C     +  L   +N  +  +P          + ++  + N+  S     I  S 
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCSM 667

Query: 219 ------TVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDL-------MGCLPSEIGWL 265
                   S VT ++N               ++ IILSNN +       +          
Sbjct: 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727

Query: 266 KKLTVFDASSNSFYGSVPQS--FSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSY 323
             LT  D   N    S+      ++L  +  + +SYN  +     Q      +  F   +
Sbjct: 728 YLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH 785

Query: 324 N 324
            
Sbjct: 786 Q 786

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  110 bits (277), Expect = 9e-26
 Identities = 34/242 (14%), Positives = 77/242 (31%), Gaps = 23/242 (9%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           I    N I  +    +  L+ L + +  ++ F               + +    +   + 
Sbjct: 430 IGNLTNRI-TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWE-----DANSDYAKQYENE 483

Query: 165 PNVCLSWTSLRYLDLRYNNFEGEVPRELFKM-KLDAIFLNNNRFSSW---------IPET 214
                +   L  ++L       ++P  L+ + +L ++ +  NR  S          + + 
Sbjct: 484 ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543

Query: 215 IGE-STVSVVTFAHNNFSG-CVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFD 272
                 + +    +NN        S+  M  +  +   +N +        G   KLT   
Sbjct: 544 EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTDLK 601

Query: 273 ASSNSFYGSVPQS-FSSLESIHRLVLSYNQLTGYVSE-QICKLPNINNFTFSYNYFQGLG 330
              N     +P+   +  + +  L  S+N+L    +      +  + +  FSYN     G
Sbjct: 602 LDYNQI-EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEG 660

Query: 331 NE 332
             
Sbjct: 661 RN 662

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  109 bits (274), Expect = 2e-25
 Identities = 44/247 (17%), Positives = 83/247 (33%), Gaps = 36/247 (14%)

Query: 105 IDLNGNDIAGYFPAELG-WLSDLALFHVNSNRFCGIIPESLSNWKLIY--EFDVSNNRLV 161
           + L+ N I    P +   +   +     + N+    IP   +   +      D S N++ 
Sbjct: 600 LKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIG 657

Query: 162 GSFPNVC-----LSWTSLRYLDLRYNNFEGEVPRELFKM--KLDAIFLNNNRFSSWIPET 214
               N+          +   + L YN  +   P ELF     +  I L+NN  +S IPE 
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTS-IPEN 715

Query: 215 IGESTVSVVT---------FAHNNFSGCVPRSI--GNMPNVNEIILSNNDLMGCLPSEIG 263
             +                   N  +  +        +P ++ + +S N      P++  
Sbjct: 716 SLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPL 773

Query: 264 WLKKLTVF------DASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNIN 317
              +L  F      DA  N      P   ++  S+ +L +  N +   V E++   P + 
Sbjct: 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLY 830

Query: 318 NFTFSYN 324
               + N
Sbjct: 831 ILDIADN 837

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  107 bits (269), Expect = 9e-25
 Identities = 38/245 (15%), Positives = 80/245 (32%), Gaps = 24/245 (9%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVG-- 162
            + +              L DL    + +      +P+ L +   +   +++ NR +   
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531

Query: 163 -------SFPNVCLSWTSLRYLDLRYNNFEGEVPRE--LFKM-KLDAIFLNNNRFSSWIP 212
                     +   +   ++   + YNN E E P    L KM KL  +   +N+    + 
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRH-LE 589

Query: 213 ETIGESTVSVVTFAHNNFSGCVPRSIG-NMPNVNEIILSNNDLMGCLPS--EIGWLKKLT 269
                  ++ +   +N     +P         V  +  S+N L   +P+      +  + 
Sbjct: 590 AFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMG 647

Query: 270 VFDASSNSFYGSVPQSFSSLE-----SIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYN 324
             D S N           S++     +   + LSYN++  + +E       I+    S N
Sbjct: 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707

Query: 325 YFQGL 329
               +
Sbjct: 708 LMTSI 712

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  106 bits (265), Expect = 4e-24
 Identities = 35/248 (14%), Positives = 75/248 (30%), Gaps = 32/248 (12%)

Query: 105 IDLNGNDIAGYFP--AELGWLSDLALFHVNSNRFCGI---IPESLSNWKLI--YEFDVSN 157
           +  + N +    P       +  +     + N+       I  S+ ++K I      +S 
Sbjct: 624 LGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682

Query: 158 NRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIF---------LNNNRFS 208
           N +      +  + + +  + L  N     +P    K K              L  N+ +
Sbjct: 683 NEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741

Query: 209 SWIPETIGESTVSVVTF---AHNNFSGCVPRSIGNMPNVNEI------ILSNNDLMGCLP 259
           S + +    +T+  ++    ++N FS   P    N   +             N ++   P
Sbjct: 742 S-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799

Query: 260 SEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNF 319
           + I     L      SN     V +       ++ L ++ N         +C       +
Sbjct: 800 TGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMY 856

Query: 320 TFSYNYFQ 327
              Y+  Q
Sbjct: 857 VLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 80.7 bits (199), Expect = 4e-16
 Identities = 27/247 (10%), Positives = 66/247 (26%), Gaps = 16/247 (6%)

Query: 96  NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPES---LSNWKLIYE 152
           ++ +T  A + +   + A Y        +        + R+      +     NW     
Sbjct: 248 DNKLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWN---- 303

Query: 153 FDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMK-LDAIFLNNNRFSSWI 211
           F+   +           +   +  L L     +G VP  + ++  L  +    +  +   
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 212 PETIGESTVSVVTF--AHNNFSGCVPRSIGNMPNVNEIILSNNDL-----MGCLPSEIGW 264
                E     ++    H          +     +N   L  + +     M  +  +   
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 265 LKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYN 324
             K T     +N     + ++   L  +  +  + +  T        +  N +      N
Sbjct: 424 SLKDTQIGNLTNRI-TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482

Query: 325 YFQGLGN 331
                 N
Sbjct: 483 EELSWSN 489

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 7/136 (5%)

Query: 204 NNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIG 263
           N R+ S        S         + +       + N   V  + L+     G +P  IG
Sbjct: 285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIG 344

Query: 264 WLKKLTVFDASSNSFYGSVPQSFS-------SLESIHRLVLSYNQLTGYVSEQICKLPNI 316
            L +L V    ++S   S             S E  HR+ + Y ++     +++     +
Sbjct: 345 QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404

Query: 317 NNFTFSYNYFQGLGNE 332
            +        + +  +
Sbjct: 405 QDAINRNPEMKPIKKD 420

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  106 bits (267), Expect = 1e-24
 Identities = 36/243 (14%), Positives = 84/243 (34%), Gaps = 13/243 (5%)

Query: 105 IDLNGNDIAGYFPAELG-----WLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNR 159
           ++  G          L       L       ++       + E L    +    ++  + 
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE-SINLQKHY 265

Query: 160 LVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM-KLDAIFLNNNRFSSWIPETIGE- 217
                 N    ++ L+ LDL   +   E+P  L  +  L  + L+ N+F +    +    
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNF 324

Query: 218 STVSVVTFAHNNFSGCV-PRSIGNMPNVNEIILSNNDL--MGCLPSEIGWLKKLTVFDAS 274
            +++ ++   N     +    + N+ N+ E+ LS++D+    C   ++  L  L   + S
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384

Query: 275 SNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSE-QICKLPNINNFTFSYNYFQGLGNEC 333
            N       ++F     +  L L++ +L    ++     L  +     S++       + 
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444

Query: 334 IPG 336
             G
Sbjct: 445 FDG 447

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  103 bits (258), Expect = 2e-23
 Identities = 34/232 (14%), Positives = 69/232 (29%), Gaps = 8/232 (3%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           + L  N +       L     L            I    L N K +    + +N +    
Sbjct: 86  LVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK 145

Query: 165 PNVCLSWTSLRYLDLRYNNFEG---EVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVS 221
                    L+ LD + N       E    L +    ++ LN N  +   P     +   
Sbjct: 146 LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQ 205

Query: 222 VVTFAHNNFSGCVPRSIGN--MPNVNEIILSNNDLMGCLPSEIGWLKK--LTVFDASSNS 277
            + F        + + + N  + ++      + D     P+    L +  +   +   + 
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265

Query: 278 FYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGL 329
           F+     +F     +  L L+   L+  +   +  L  +     S N F+ L
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENL 316

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 99.3 bits (248), Expect = 3e-22
 Identities = 35/234 (14%), Positives = 74/234 (31%), Gaps = 25/234 (10%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           I+L  +             S L    + +      +P  L     + +  +S N+     
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLC 317

Query: 165 PNVCLSWTSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETIGESTVSV 222
                ++ SL +L ++ N    E+     +    L  + L+++                 
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE-------------- 363

Query: 223 VTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSV 282
                   S C    + N+ ++  + LS N+ +           +L + D +        
Sbjct: 364 -------TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416

Query: 283 PQS-FSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIP 335
            QS F +L  +  L LS++ L     +    LP + +     N+F     +   
Sbjct: 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 96.6 bits (241), Expect = 2e-21
 Identities = 43/243 (17%), Positives = 87/243 (35%), Gaps = 18/243 (7%)

Query: 106 DLNGNDIAGYFPAELGWLSDLALFHVNSNRFCG-IIPESLSNWKLIYEFDVSNNRLVGS- 163
            L+ N               L    +  N     +    L N + + E D+S++ +  S 
Sbjct: 307 VLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366

Query: 164 FPNVCLSW-TSLRYLDLRYNNFEGEVPRELFKM--KLDAIFLNNNRFSSWIPETIGESTV 220
             N+ L   + L+ L+L YN     +  E FK   +L+ + L   R      ++  ++  
Sbjct: 367 CCNLQLRNLSHLQSLNLSYNEPLS-LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425

Query: 221 SVVT--FAHNNFSGCVPRSIGNMPNVNEIILSNNDLMG---CLPSEIGWLKKLTVFDASS 275
            +     +H+       +    +P +  + L  N          + +  L +L +   S 
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485

Query: 276 NSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNI------NNFT-FSYNYFQG 328
                    +F+SL+ ++ + LS+N+LT    E +  L  I      N+ +    +    
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPI 545

Query: 329 LGN 331
           L  
Sbjct: 546 LSQ 548

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 92.8 bits (231), Expect = 5e-20
 Identities = 38/236 (16%), Positives = 81/236 (34%), Gaps = 18/236 (7%)

Query: 105 IDLNGNDIA--GYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVG 162
           +DL+ +DI        +L  LS L   +++ N    +  E+      +   D++  RL  
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414

Query: 163 SFPNVCLSW-TSLRYLDLRYNNFEGEVPRELFKM-KLDAIFLNNNRFSSWIPETIGE--- 217
                       L+ L+L ++  +    +    +  L  + L  N F     +       
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474

Query: 218 -STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSN 276
              + ++  +  + S     +  ++  +N + LS+N L       +  LK + + + +SN
Sbjct: 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL-NLASN 533

Query: 277 SFYGSVPQSFSSLESIHRLVLSYNQLTG---------YVSEQICKLPNINNFTFSY 323
                +P     L     + L  N L           +  E + KL +  +     
Sbjct: 534 HISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCEN 589

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 92.0 bits (229), Expect = 7e-20
 Identities = 27/250 (10%), Positives = 75/250 (30%), Gaps = 14/250 (5%)

Query: 94  PDN--SNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIY 151
           P    ++      ++ + N +          L +L    +   +   I  ++  +   + 
Sbjct: 28  PGTLPNSTEC---LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLD 84

Query: 152 EFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMK-LDAIFLNNNRFSSW 210
              ++ N L+           +L++L              L   K L++++L +N  SS 
Sbjct: 85  TLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144

Query: 211 IPETIGEST-VSVVTFAHNNFSGCVPRSIGNMPNVNEIIL--SNNDLMGCLPSEIGWLKK 267
                  +  + V+ F +N         + ++     + L  + ND+   +         
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSAV 203

Query: 268 LTVFDASSNSFYGSVPQ--SFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFT--FSY 323
               +         + +    S+++S+                    L  ++  +     
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263

Query: 324 NYFQGLGNEC 333
           +YF  + +  
Sbjct: 264 HYFFNISSNT 273

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.4 bits (191), Expect = 3e-15
 Identities = 22/177 (12%), Positives = 44/177 (24%), Gaps = 7/177 (3%)

Query: 152 EFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM--KLDAIFLNNNRFSS 209
            ++  N  L    P    +  S   L+  +N     +    F     L  + L   +   
Sbjct: 16  TYNCENLGLN-EIPGTLPN--STECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 210 WIPETIGEST-VSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKL 268
              +T      +  +    N        ++     +  +      +       +   K L
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 269 TVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNY 325
                 SN             E +  L    N +     E +  L    N + + N 
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.9 bits (182), Expect = 4e-14
 Identities = 28/206 (13%), Positives = 65/206 (31%), Gaps = 13/206 (6%)

Query: 105 IDLNGNDIAGYFP-AELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGS 163
           +DL    +      +    L  L + +++ +       +       +   ++  N     
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464

Query: 164 F---PNVCLSWTSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETIGES 218
                N   +   L  L L + +    + +  F     ++ + L++NR +S   E +   
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLS-SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523

Query: 219 TVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMG-CLPSEIGWLKKLTVFDASSNS 277
               +  A N+ S  +P  +  +     I L  N L   C      +   L  +  +   
Sbjct: 524 KGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC---SNIYF--LEWYKENMQK 578

Query: 278 FYGSVPQSFSSLESIHRLVLSYNQLT 303
              +      +   +  + LS   L+
Sbjct: 579 LEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 3/110 (2%)

Query: 227 HNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSF 286
           +   +  +P ++    +   +  S N L     +    L  LT  D +    Y     +F
Sbjct: 21  NLGLNE-IPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTF 77

Query: 287 SSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPG 336
            S   +  LVL+ N L       +     + +  F       +    +  
Sbjct: 78  QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN 127

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 98.5 bits (246), Expect = 8e-23
 Identities = 27/210 (12%), Positives = 68/210 (32%), Gaps = 15/210 (7%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVS-NNRLV-- 161
           + ++   +    P  +   + L    +  N     +P S+++   + E  +     L   
Sbjct: 109 MTIDAAGLM-ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTEL 166

Query: 162 ------GSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMK-LDAIFLNNNRFSSWIPET 214
                            +L+ L L +      +P  +  ++ L ++ + N+  S+ +   
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPA 224

Query: 215 IGE-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDA 273
           I     +  +           P   G    +  +IL +   +  LP +I  L +L   D 
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284

Query: 274 SSNSFYGSVPQSFSSLESIHRLVLSYNQLT 303
                   +P   + L +   +++  +   
Sbjct: 285 RGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.0 bits (211), Expect = 3e-18
 Identities = 24/213 (11%), Positives = 63/213 (29%), Gaps = 19/213 (8%)

Query: 116 FPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIY--EFDVSNNRLVGSFPNVCLSWTS 173
                   ++  +    + R      + L +         ++ +  L   FP+     + 
Sbjct: 48  SAWRQANSNNPQI-ETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSH 105

Query: 174 LRYLDLRYNNFEGEVPRELFKMK-LDAIFLNNNRFSSWIPETIGE-STVSVVTFAHNNFS 231
           L+++ +       E+P  + +   L+ + L  N   + +P +I   + +  ++       
Sbjct: 106 LQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPEL 163

Query: 232 GCVPRSIGNMPNVNEII---------LSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSV 282
             +P  + +     E           L    +   LP+ I  L+ L      ++    ++
Sbjct: 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPL-SAL 221

Query: 283 PQSFSSLESIHRLVLSYNQLTGYVSEQICKLPN 315
             +   L  +  L L                  
Sbjct: 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 82.7 bits (205), Expect = 2e-17
 Identities = 34/217 (15%), Positives = 72/217 (33%), Gaps = 37/217 (17%)

Query: 140 IPESLSNWKLIYEFDVSNNRLVGSFPNVC---------------------LSWTSLRYLD 178
             + LS W+  Y  D +         N                        +      L+
Sbjct: 28  YHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALE 87

Query: 179 LRYNNFEGEVPRELFKMK-LDAIFLNNNRFSSWIPETIGE-STVSVVTFAHNNFSGCVPR 236
           LR      + P + F++  L  + ++       +P+T+ + + +  +T A N     +P 
Sbjct: 88  LRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLR-ALPA 144

Query: 237 SIGNMPNVNEIILSNNDLMGCLPSEIG---------WLKKLTVFDASSNSFYGSVPQSFS 287
           SI ++  + E+ +     +  LP  +           L  L            S+P S +
Sbjct: 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA 203

Query: 288 SLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYN 324
           +L+++  L +  + L+  +   I  LP +        
Sbjct: 204 NLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.2 bits (170), Expect = 5e-13
 Identities = 19/155 (12%), Positives = 40/155 (25%), Gaps = 8/155 (5%)

Query: 172 TSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFS 231
           +    L  + +         L + +      + NR+ S        S    +        
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQWQRHYN-ADRNRWHS--AWRQANSNNPQIETRTGRAL 68

Query: 232 GCVPRSIGN--MPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSL 289
                 + +   P    + L +  L    P +   L  L      +      +P +    
Sbjct: 69  KATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGL-MELPDTMQQF 126

Query: 290 ESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYN 324
             +  L L+ N L   +   I  L  +   +    
Sbjct: 127 AGLETLTLARNPLRA-LPASIASLNRLRELSIRAC 160

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.4 bits (155), Expect = 4e-11
 Identities = 22/147 (14%), Positives = 45/147 (30%), Gaps = 6/147 (4%)

Query: 116 FPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLR 175
              E   L +L    +       + P S++N + +    + N+ L  +          L 
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLE 232

Query: 176 YLDLRYNNFEGEVPRELFKMK-LDAIFL-NNNRFSSWIPETIGE-STVSVVTFAHNNFSG 232
            LDLR        P        L  + L + +   + +P  I   + +  +         
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT-LPLDIHRLTQLEKLDLRGCVNLS 291

Query: 233 CVPRSIGNMPNVNEIILSNNDLMGCLP 259
            +P  I  +P    I++  +       
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQAQLDQ 318

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 99.7 bits (249), Expect = 2e-22
 Identities = 39/238 (16%), Positives = 72/238 (30%), Gaps = 14/238 (5%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           + L G  I   +  ++          +   +        L     +    ++ N+   SF
Sbjct: 290 MSLAGVSIK--YLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF---LKSLTLTMNKGSISF 344

Query: 165 PNVCLSWTSLRYLDLRYNNFEG---EVPRELFKMKLDAIFLNNNRFSSWIPETIGEST-V 220
             V L   SL YLDL  N           +L    L  + L+ N     +         +
Sbjct: 345 KKVAL--PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEEL 401

Query: 221 SVVTFAHNNFSGCVPRS-IGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFY 279
             + F H+        S   ++  +  + +S  +           L  L     + NSF 
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 280 GSVPQS-FSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPG 336
            +   + F++  ++  L LS  QL          L  +     S+N    L +     
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 96.3 bits (240), Expect = 3e-21
 Identities = 40/231 (17%), Positives = 72/231 (31%), Gaps = 36/231 (15%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPES-LSNWKLIYEFDVSNNRLVGS 163
           +DL+ N       A    L +L       +    +   S   + + +   D+S       
Sbjct: 381 LDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439

Query: 164 FPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM--KLDAIFLNNNRFSSWIPETIGESTVS 221
           F  + L  TSL  L +  N+F+      +F     L  + L+  +    I          
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-IS--------- 489

Query: 222 VVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGS 281
                              +  +  + +S+N+L+    S    L  L+  D S N    S
Sbjct: 490 -------------WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536

Query: 282 VPQSFSSLESIHRLVLSYNQLT---------GYVSEQICKLPNINNFTFSY 323
                   +S+    L+ N +           +V EQ   L N+   T + 
Sbjct: 537 KGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCAT 587

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 95.9 bits (239), Expect = 4e-21
 Identities = 38/236 (16%), Positives = 81/236 (34%), Gaps = 16/236 (6%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRL---- 160
           + +    +  +   +L +L  L    +  N+  G I         +   D+S N L    
Sbjct: 312 LSIIRCQLKQFPTLDLPFLKSL---TLTMNK--GSISFKKVALPSLSYLDLSRNALSFSG 366

Query: 161 VGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM-KLDAIFLNNNRFSSWIPETIGEST 219
             S+ ++     SLR+LDL +N     +      + +L  +   ++        +   S 
Sbjct: 367 CCSYSDLGT--NSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423

Query: 220 VSVVT--FAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEI-GWLKKLTVFDASSN 276
             ++    ++ N           + ++N + ++ N       S +      LT  D S  
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483

Query: 277 SFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNE 332
                    F +L  +  L +S+N L    S    +L +++    S+N  +     
Sbjct: 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 84.3 bits (209), Expect = 2e-17
 Identities = 35/248 (14%), Positives = 74/248 (29%), Gaps = 24/248 (9%)

Query: 94  PDN--SNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIY 151
           PD+  S+      IDL+ N +           S+L    ++      I  ++      + 
Sbjct: 27  PDDIPSSTKN---IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83

Query: 152 EFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM-KLDAIFLNNNRFSS- 209
              ++ N +    P      TSL  L              + ++  L  + + +N   S 
Sbjct: 84  NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 143

Query: 210 WIPETIGEST-VSVVTFAHNNFSGCVPRSIGNMPNVN----EIILSNNDLMGCLPSEIGW 264
            +P      T +  V  ++N         +  +         + +S N +   +  +   
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQ 202

Query: 265 LKKLTVFDASSNSFYGSVPQ-SFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSY 323
             KL       N    ++ +    +L  +H   L   +               N   F  
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD----------ERNLEIFEP 252

Query: 324 NYFQGLGN 331
           +  +GL +
Sbjct: 253 SIMEGLCD 260

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.0 bits (203), Expect = 1e-16
 Identities = 34/236 (14%), Positives = 79/236 (33%), Gaps = 11/236 (4%)

Query: 107 LNGNDIAGYFPAELGWLSDLAL--FHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
            +  ++  + P+ +  L D+ +  F +                  +    ++   +   +
Sbjct: 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KY 299

Query: 165 PNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVT 224
                     + L +     + + P       L ++ L  N+ S    + +   ++S + 
Sbjct: 300 LEDVPKHFKWQSLSIIRCQLK-QFPTLDLP-FLKSLTLTMNKGSI-SFKKVALPSLSYLD 356

Query: 225 FAHNNFS--GCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSV 282
            + N  S  GC   S     ++  + LS N  +  + +    L++L   D   ++     
Sbjct: 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVT 415

Query: 283 PQS-FSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGS 337
             S F SLE +  L +SY             L ++N    + N F+      +  +
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.0 bits (203), Expect = 1e-16
 Identities = 32/242 (13%), Positives = 63/242 (26%), Gaps = 15/242 (6%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           +DL+  +I          L  L+   +  N      P S S    +        +L    
Sbjct: 61  LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120

Query: 165 PNVCLSWTSLRYLDLRYNNFEGEVPRELFKM--KLDAIFLNNNRFSSWIPETIGESTVSV 222
                   +L+ L++ +N          F     L  + L+ N   +     +     + 
Sbjct: 121 SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180

Query: 223 VTFA----HNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGW-LKKLTVFDASSNS 277
                     N    +         ++E+ L  N     +       L  L V       
Sbjct: 181 QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240

Query: 278 FYGSV------PQSFSSLESIHR--LVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGL 329
           F          P     L  +      L+Y         +   L N++  + +    + L
Sbjct: 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL 300

Query: 330 GN 331
            +
Sbjct: 301 ED 302

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 77.8 bits (192), Expect = 3e-15
 Identities = 26/170 (15%), Positives = 55/170 (32%), Gaps = 5/170 (2%)

Query: 162 GSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGE-STV 220
           GS    C+                 +VP ++       I L+ N        +    S +
Sbjct: 2   GSLNP-CIEVVPNITYQCMDQKLS-KVPDDIPS-STKNIDLSFNPLKILKSYSFSNFSEL 58

Query: 221 SVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYG 280
             +  +         ++   + +++ +IL+ N +    P     L  L    A       
Sbjct: 59  QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118

Query: 281 SVPQSFSSLESIHRLVLSYNQLTGY-VSEQICKLPNINNFTFSYNYFQGL 329
                   L ++ +L +++N +    +      L N+ +   SYNY Q +
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 20/110 (18%), Positives = 33/110 (30%), Gaps = 3/110 (2%)

Query: 227 HNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSF 286
               S  VP  I    +   I LS N L            +L   D S         +++
Sbjct: 20  DQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW 76

Query: 287 SSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPG 336
             L  +  L+L+ N +  +       L ++ N          L +  I  
Sbjct: 77  HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 96.8 bits (241), Expect = 3e-21
 Identities = 44/280 (15%), Positives = 92/280 (32%), Gaps = 19/280 (6%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           ++L  N I          L +L + +++ N    +   +      +   D+  N +    
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354

Query: 165 PNVCLSWTSLRYLDLRYNNFEGEVPRELFKMK-LDAIFLNNNRFSSWIPETIGESTVSVV 223
                    L+ LDLR N         +  +  +  IFL+ N+  + +P+     T +++
Sbjct: 355 DQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVT-LPK--INLTANLI 406

Query: 224 TFAHNNFSGCVPRSI-GNMPNVNEIILSNNDLMGCLPSEI-GWLKKLTVFDASSNSFYGS 281
             + N             +P++  +IL+ N    C   +       L       N    +
Sbjct: 407 HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466

Query: 282 VPQS-----FSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPG 336
                    F  L  +  L L++N L          L  +   + + N    L +  +P 
Sbjct: 467 WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA 526

Query: 337 SKEGGVFDDTSNCLAQRPSQKWATTCSPVVS-NPVDCSKD 375
           + E  + D + N L       + +     ++ N   C  +
Sbjct: 527 NLE--ILDISRNQLLAPNPDVFVSLSVLDITHNKFICECE 564

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 88.7 bits (220), Expect = 1e-18
 Identities = 36/252 (14%), Positives = 68/252 (26%), Gaps = 25/252 (9%)

Query: 105 IDLNGNDIAG-YFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIY--EFDVSNNRLV 161
           +DL+ N I   Y     G L+ L     +SN+   +    L   +      F ++ N L 
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187

Query: 162 GSFPNVCLSW------TSLRYLDLRYNNFEGEVPRELFK-------------MKLDAIFL 202
                             L  LD+  N +  ++                     +     
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247

Query: 203 NNNRFSSWIPETIG---ESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLP 259
             +        T      S+V  +  +H        R    + ++  + L+ N +     
Sbjct: 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD 307

Query: 260 SEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNF 319
                L  L V + S N        +F  L  +  + L  N +     +    L  +   
Sbjct: 308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367

Query: 320 TFSYNYFQGLGN 331
               N    +  
Sbjct: 368 DLRDNALTTIHF 379

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 77.5 bits (191), Expect = 4e-15
 Identities = 42/256 (16%), Positives = 77/256 (30%), Gaps = 29/256 (11%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRF--CGIIPESLSNWKLIYEFDVSNNRLVG 162
           +DL  + I    P     L  L    +         +      N K +   D+S N++  
Sbjct: 78  LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS 137

Query: 163 SFPNVCLS-WTSLRYLDLRYNNFEGEVPRELFK----MKLDAIFLNNNRFSSWIPETIGE 217
            + +       SL+ +D   N     V     +      L    L  N   S +    G+
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196

Query: 218 S-------------------TVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCL 258
                               TV +     N  S     S+    ++       +++    
Sbjct: 197 CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256

Query: 259 PSEIGWLKK--LTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNI 316
            +    L +  +   D S    +    + F +L+ +  L L+YN++     E    L N+
Sbjct: 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNL 316

Query: 317 NNFTFSYNYFQGLGNE 332
                SYN    L + 
Sbjct: 317 QVLNLSYNLLGELYSS 332

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 76.8 bits (189), Expect = 7e-15
 Identities = 43/218 (19%), Positives = 69/218 (31%), Gaps = 24/218 (11%)

Query: 134 NRFCGI--IPESLSNWKLIYEFDVSNNRLV----GSFPNVCLSWTSLRYLDLRYNNFEGE 187
            RFC +  +P+ L+         +S N +      SFP +      L+ L+L        
Sbjct: 11  YRFCNLTQVPQVLNT---TERLLLSFNYIRTVTASSFPFL----EQLQLLELGSQYTPLT 63

Query: 188 VPRELFK--MKLDAIFLNNNRFSSWIPETI--GESTVSVVTFAHNNFSGCV--PRSIGNM 241
           + +E F+    L  + L +++    +      G   +  +       S  V       N+
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122

Query: 242 PNVNEIILSNNDLMG-CLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIH--RLVLS 298
             +  + LS N +    L    G L  L   D SSN  +         L+        L+
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182

Query: 299 YNQLTGYVSEQICKLPN-INNFTFSYNYFQGLGNECIP 335
            N L   VS    K  N   N         G G     
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDI 220

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.8 bits (132), Expect = 5e-08
 Identities = 23/132 (17%), Positives = 43/132 (32%), Gaps = 6/132 (4%)

Query: 201 FLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPS 260
           F      +  +P+ +  +T   +  + N        S   +  +  + L +      +  
Sbjct: 10  FYRFCNLTQ-VPQVL--NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK 66

Query: 261 EI-GWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYV--SEQICKLPNIN 317
           E    L  L + D  S+  Y   P +F  L  +  L L +  L+  V        L  + 
Sbjct: 67  EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126

Query: 318 NFTFSYNYFQGL 329
               S N  + L
Sbjct: 127 RLDLSKNQIRSL 138

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 93.5 bits (233), Expect = 3e-21
 Identities = 44/224 (19%), Positives = 80/224 (35%), Gaps = 15/224 (6%)

Query: 106 DLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFP 165
           DL+GN ++    A+L   + L L +++SN     +   L +   +   D++NN +     
Sbjct: 40  DLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-QELL 96

Query: 166 NVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGE-STVSVVT 224
                  S+  L    NN    V     +     I+L NN+ +       G  S V  + 
Sbjct: 97  VG----PSIETLHAANNNIS-RVSCSRGQ-GKKNIYLANNKITMLRDLDEGCRSRVQYLD 150

Query: 225 FAHNNFSG-CVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVP 283
              N            +   +  + L  N +   +  ++    KL   D SSN     + 
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQVV-FAKLKTLDLSSNKL-AFMG 207

Query: 284 QSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQ 327
             F S   +  + L  N+L   + + +    N+ +F    N F 
Sbjct: 208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.0 bits (216), Expect = 5e-19
 Identities = 38/232 (16%), Positives = 75/232 (32%), Gaps = 22/232 (9%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           +DLN N +      EL     +   H  +N    +        K      ++NN++    
Sbjct: 85  LDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKK---NIYLANNKITMLR 136

Query: 165 PNVCLSWTSLRYLDLRYNNFEGEVPRELFKM--KLDAIFLNNNRFSSWIPETIGESTVSV 222
                  + ++YLDL+ N  +     EL      L+ + L  N     +   +  + +  
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQVVFAKLKT 195

Query: 223 VTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSV 282
           +  + N  +  +     +   V  I L NN L+  +   + + + L  FD   N F    
Sbjct: 196 LDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF---- 249

Query: 283 PQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECI 334
                   ++        ++     + + KL   N    +       G  C 
Sbjct: 250 -----HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.0 bits (185), Expect = 5e-15
 Identities = 35/227 (15%), Positives = 65/227 (28%), Gaps = 26/227 (11%)

Query: 123 LSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYN 182
            +   +  V  +     +     +   + E D+S N L          +T L  L+L  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 183 NFEGEVPRELFKM-KLDAIFLNNNRFSSW------------------IPETIGESTVSVV 223
               E   +L  +  L  + LNNN                       +  + G+     +
Sbjct: 69  VLY-ETL-DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQG-KKNI 125

Query: 224 TFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMG-CLPSEIGWLKKLTVFDASSNSFYGSV 282
             A+N  +       G    V  + L  N++              L   +   N  Y  V
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DV 184

Query: 283 PQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGL 329
                    +  L LS N+L  ++  +      +   +   N    +
Sbjct: 185 KGQ-VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLI 229

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 23/166 (13%), Positives = 61/166 (36%), Gaps = 15/166 (9%)

Query: 140 IPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK--MKL 197
           I ++ + +K+     V+++ L  +  ++  S  +++ LDL  N    ++         KL
Sbjct: 5   IKQNGNRYKIE---KVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKL 60

Query: 198 DAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC 257
           + + L++N       +    ST+  +   +N         +   P++  +  +NN++   
Sbjct: 61  ELLNLSSNVLYE-TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-SR 113

Query: 258 LPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLT 303
           +       +       ++N               +  L L  N++ 
Sbjct: 114 VSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 2/94 (2%)

Query: 238 IGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVL 297
             N        ++++ L   L S       +   D S N          +    +  L L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 298 SYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGN 331
           S N L    +  +  L  +     + NY Q L  
Sbjct: 66  SSNVLYE--TLDLESLSTLRTLDLNNNYVQELLV 97

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 94.1 bits (234), Expect = 9e-21
 Identities = 38/244 (15%), Positives = 78/244 (31%), Gaps = 31/244 (12%)

Query: 106 DLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRL--VGS 163
            +  + +     +      ++    ++ N    I    L+ +  +   ++S+N L     
Sbjct: 16  KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD 75

Query: 164 FPNVCLSWTSLRYLDLRYNNFE------------------GEVPRELFKMKLDAIFLNNN 205
             ++    ++LR LDL  N  +                    V     +     I+L NN
Sbjct: 76  LESL----STLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQ-GKKNIYLANN 130

Query: 206 RFSSWIPETIGE-STVSVVTFAHNNFSG-CVPRSIGNMPNVNEIILSNNDLMGCLPSEIG 263
           + +       G  S V  +    N            +   +  + L  N +   +  ++ 
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQVV 189

Query: 264 WLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSY 323
              KL   D SSN     +   F S   +  + L  N+L   + + +    N+ +F    
Sbjct: 190 -FAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

Query: 324 NYFQ 327
           N F 
Sbjct: 247 NGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 79.5 bits (196), Expect = 6e-16
 Identities = 34/227 (14%), Positives = 64/227 (28%), Gaps = 26/227 (11%)

Query: 123 LSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYN 182
            +   +  V  +     +     +   + E D+S N L          +T L  L+L  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 183 NFEGEVPRELFKM-KLDAIFLNNNRFSSW------------------IPETIGESTVSVV 223
                   +L  +  L  + LNNN                       +  + G+     +
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQG-KKNI 125

Query: 224 TFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMG-CLPSEIGWLKKLTVFDASSNSFYGSV 282
             A+N  +       G    V  + L  N++              L   +   N  Y  V
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DV 184

Query: 283 PQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGL 329
                    +  L LS N+L  ++  +      +   +   N    +
Sbjct: 185 KGQ-VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLI 229

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 71.8 bits (176), Expect = 2e-13
 Identities = 17/178 (9%), Positives = 56/178 (31%), Gaps = 14/178 (7%)

Query: 163 SFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETIGEST- 219
           +   +  +    +   +  ++ + +    L +    +  + L+ N  S      +   T 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 220 VSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFY 279
           + ++  + N         + ++  +  + L+NN +      E+     +    A++N+  
Sbjct: 60  LELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS 112

Query: 280 GSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGS 337
                     ++   + L+ N++T            +       N    +    +  S
Sbjct: 113 RVSCSRGQGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 69.1 bits (169), Expect = 1e-12
 Identities = 36/239 (15%), Positives = 68/239 (28%), Gaps = 14/239 (5%)

Query: 106 DLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFP 165
           +L  N I      ++   + L    ++SN+   +      +   +    + NN+LV    
Sbjct: 175 NLQYNFIYD-VKGQVV-FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIE 230

Query: 166 NVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTF 225
                  +L + DLR N F     R+ F        +          +   E TV  +  
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 226 AHNNFSGCVPRS----IGNMPNVNEIILS-NNDLMGCLPSEIGWLKKLTVFDASSNSFYG 280
                   +P      +  +      +LS        L  E     +    DA    +  
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT 350

Query: 281 SVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKE 339
            + Q     ++   L      L   VS        ++         Q +G   +  + E
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDG-----TLQQAVGQIELQHATE 404

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 92.2 bits (230), Expect = 1e-20
 Identities = 36/221 (16%), Positives = 85/221 (38%), Gaps = 17/221 (7%)

Query: 106 DLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFP 165
           +L  N       + L  ++ L    V  ++   + P  ++N   +Y   ++ N++     
Sbjct: 138 NLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI-EDIS 193

Query: 166 NVCLSWTSLRYLDLRYNNFEGEVPRELFKMK-LDAIFLNNNRFSSWIPETIGEST-VSVV 223
            +  S TSL Y     N      P  +  M  L+++ + NN+ +   P  +   + ++ +
Sbjct: 194 PLA-SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWL 248

Query: 224 TFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVP 283
               N  S     ++ ++  +  + + +N +     S +  L +L     ++N       
Sbjct: 249 EIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDM 304

Query: 284 QSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYN 324
           +    L ++  L LS N +T      +  L  +++  F+  
Sbjct: 305 EVIGGLTNLTTLFLSQNHITDI--RPLASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 78.7 bits (195), Expect = 4e-16
 Identities = 42/220 (19%), Positives = 81/220 (36%), Gaps = 25/220 (11%)

Query: 95  DNSNITVVAGI---------DLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLS 145
            N N++ ++ +          +  + +    P  +  L+DL    +N N+   I P  L+
Sbjct: 141 ANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LA 196

Query: 146 NWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM-KLDAIFLNN 204
           +   ++ F    N++      V  + T L  L +  N      P  L  + +L  + +  
Sbjct: 197 SLTSLHYFTAYVNQIT-DITPVA-NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGT 252

Query: 205 NRFSSWIPETIGEST-VSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIG 263
           N+ S      + + T + ++    N  S      + N+  +N + L+NN L       IG
Sbjct: 253 NQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIG 308

Query: 264 WLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLT 303
            L  LT    S N      P   +SL  +     +   + 
Sbjct: 309 GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 70.6 bits (174), Expect = 2e-13
 Identities = 23/178 (12%), Positives = 60/178 (33%), Gaps = 11/178 (6%)

Query: 154 DVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPE 213
                 +   FP+  L         L+  +    V +E  +  +  + +   + +S I  
Sbjct: 6   ATLPAPINQIFPDADL--AEGIRAVLQKASVTDVVTQEELE-SITKLVVAGEKVAS-IQG 61

Query: 214 TIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDA 273
               + +  +    N  +   P  + N+  +  + +  N +     S +  L  L     
Sbjct: 62  IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYL 117

Query: 274 SSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGN 331
           + ++   S     ++L  ++ L L  N     +S  +  +  +N  T + +  + +  
Sbjct: 118 NEDNI--SDISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP 172

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 85.0 bits (211), Expect = 8e-18
 Identities = 45/228 (19%), Positives = 85/228 (37%), Gaps = 16/228 (7%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           + LNGN +       L  L++L    + +N+   + P  LS    + E  +  N++    
Sbjct: 226 LSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 281

Query: 165 PNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGEST-VSVV 223
           P   L  T+L  L+L  N  E   P    K  L  + L  N  S   P  +   T +  +
Sbjct: 282 PLAGL--TALTNLELNENQLEDISPISNLK-NLTYLTLYFNNISDISP--VSSLTKLQRL 336

Query: 224 TFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVP 283
            F +N  S     S+ N+ N+N +   +N +     + +  L ++T    +  ++  + P
Sbjct: 337 FFYNNKVSD--VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWT-NAP 391

Query: 284 QSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGN 331
            ++ +  SI   V +           I    +      ++N       
Sbjct: 392 VNYKANVSIPNTVKNVTGAL-IAPATISDGGSYTEPDITWNLPSYTNE 438

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 78.1 bits (193), Expect = 1e-15
 Identities = 37/227 (16%), Positives = 80/227 (35%), Gaps = 19/227 (8%)

Query: 106 DLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFP 165
            L   ++          L  +     +      I  + +     + + + SNN+L    P
Sbjct: 30  VLGKTNVTD--TVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP 85

Query: 166 NVCLSWTSLRYLDLRYNNFEGEVPRELFKM-KLDAIFLNNNRFSSWIPETIGESTVSVVT 224
              L  T L  + +  N      P  L  +  L  + L NN+ +  I      + ++ + 
Sbjct: 86  LKNL--TKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD-IDPLKNLTNLNRLE 140

Query: 225 FAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQ 284
            + N  S     ++  + ++ ++   N          +  L  L   D SSN    S   
Sbjct: 141 LSSNTISD--ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKV--SDIS 193

Query: 285 SFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGN 331
             + L ++  L+ + NQ++      +  L N++  + + N  + +G 
Sbjct: 194 VLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT 238

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.1 bits (162), Expect = 9e-12
 Identities = 25/170 (14%), Positives = 64/170 (37%), Gaps = 14/170 (8%)

Query: 156 SNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETI 215
            +  +   F +  L         L   N    V +     ++  +  +     S   + +
Sbjct: 10  QDTPINQIFTDTAL--AEKMKTVLGKTNVTDTVSQTDLD-QVTTLQADRLGIKS--IDGV 64

Query: 216 GE-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDAS 274
              + ++ + F++N  +   P  + N+  + +I+++NN +     + +  L  LT     
Sbjct: 65  EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLF 120

Query: 275 SNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYN 324
           +N    +      +L +++RL LS N ++      +  L ++   +F   
Sbjct: 121 NNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ 166

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 27/182 (14%), Positives = 52/182 (28%), Gaps = 31/182 (17%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           + L  N+I+   P  +  L+ L      +N+   +   SL+N   I      +N++    
Sbjct: 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLT 369

Query: 165 PNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVT 224
           P   L  T +  L L    +          + +     N                     
Sbjct: 370 PLANL--TRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--------------- 412

Query: 225 FAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQ 284
                     P +I +  +  E  ++ N L            +       + +F G+V Q
Sbjct: 413 ---------APATISDGGSYTEPDITWN-LPSYTNEVSYTFSQPVTIGKGTTTFSGTVTQ 462

Query: 285 SF 286
             
Sbjct: 463 PL 464

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 80.4 bits (198), Expect = 4e-16
 Identities = 43/213 (20%), Positives = 81/213 (38%), Gaps = 29/213 (13%)

Query: 106 DLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFP 165
            LN  +++   P  L     + +  +  N     +PE  ++ +     D  +NRL  + P
Sbjct: 65  QLNRLNLSS-LPDNLP--PQITVLEITQNAL-ISLPELPASLE---YLDACDNRLS-TLP 116

Query: 166 NVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGE-STVSVVT 224
                  SL++LD+  N     +P       L+ I  +NN+ +  +PE       +SV  
Sbjct: 117 E---LPASLKHLDVDNNQLT-MLPELP--ALLEYINADNNQLTM-LPELPTSLEVLSV-- 167

Query: 225 FAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLT----VFDASSNSFYG 280
              NN    +P    ++     + +S N L   LP+              F    N    
Sbjct: 168 --RNNQLTFLPELPESL---EALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRI-T 220

Query: 281 SVPQSFSSLESIHRLVLSYNQLTGYVSEQICKL 313
            +P++  SL+    ++L  N L+  + E + + 
Sbjct: 221 HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.5 bits (180), Expect = 5e-14
 Identities = 34/174 (19%), Positives = 63/174 (36%), Gaps = 20/174 (11%)

Query: 140 IPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDA 199
              +   W+       + N  V       +       L L   N    +P  L   ++  
Sbjct: 29  YFSAWDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLS-SLPDNLPP-QITV 84

Query: 200 IFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLP 259
           + +  N   S +PE      +  +    N  S  +P    ++ +++   + NN L   LP
Sbjct: 85  LEITQNALIS-LPELPAS--LEYLDACDNRLS-TLPELPASLKHLD---VDNNQLT-MLP 136

Query: 260 SEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKL 313
                L+ +   +A +N     +P+  +SLE    L +  NQLT ++ E    L
Sbjct: 137 ELPALLEYI---NADNNQL-TMLPELPTSLE---VLSVRNNQLT-FLPELPESL 182

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 21/157 (13%), Positives = 38/157 (24%), Gaps = 10/157 (6%)

Query: 106 DLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNW----KLIYEFDVSNNRLV 161
            +  N +  + P     L  L    V++N    + P          +    F    NR+ 
Sbjct: 166 SVRNNQL-TFLPELPESLEAL---DVSTNLLESL-PAVPVRNHHSEETEIFFRCRENRIT 220

Query: 162 GSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVS 221
              P   LS      + L  N     +   L +      +     + S            
Sbjct: 221 -HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRP 279

Query: 222 VVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCL 258
           +       F       +  + +  E     N     L
Sbjct: 280 LADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFL 316

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 80.3 bits (198), Expect = 4e-16
 Identities = 43/248 (17%), Positives = 84/248 (33%), Gaps = 55/248 (22%)

Query: 106 DLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGI----------------IPESLSNWKL 149
           +++GN +    P     L +L++F         +                +P      + 
Sbjct: 87  EVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQ- 144

Query: 150 IYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMK-LDAIFLNNNRFS 208
             E  VS+N+L  S P      + L  L    N     +P     ++ L    +++N+ +
Sbjct: 145 --ELSVSDNQL-ASLPA---LPSELCKLWAYNNQLT-SLPMLPSGLQELS---VSDNQLA 194

Query: 209 SWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKL 268
           S +P    E  +  +   +N  +  +P     +    E+I+S N L   LP     LK+L
Sbjct: 195 S-LPTLPSE--LYKLWAYNNRLT-SLPALPSGL---KELIVSGNRL-TSLPVLPSELKEL 246

Query: 269 -----------------TVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQIC 311
                                   N     +P+S   L S   + L  N L+    + + 
Sbjct: 247 MVSGNRLTSLPMLPSGLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLSERTLQALR 305

Query: 312 KLPNINNF 319
           ++ +   +
Sbjct: 306 EITSAPGY 313

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 79.9 bits (197), Expect = 6e-16
 Identities = 42/228 (18%), Positives = 77/228 (33%), Gaps = 34/228 (14%)

Query: 106 DLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFP 165
            +  N++    PA    L  L    V+ N+    +P        +  F      L     
Sbjct: 67  VIPDNNLT-SLPALPPELRTL---EVSGNQL-TSLPVLPPGLLELSIFSNPLTHLPALPS 121

Query: 166 NVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTF 225
                   L  L +  N     +P       L  + +++N+ +S +P       +  +  
Sbjct: 122 G-------LCKLWIFGNQLT-SLPVLPP--GLQELSVSDNQLAS-LPALPS--ELCKLWA 168

Query: 226 AHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQS 285
            +N  +  +P     +    E+ +S+N L   LP+    L KL  ++    S     P  
Sbjct: 169 YNNQLT-SLPMLPSGL---QELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSL----PAL 219

Query: 286 FSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNEC 333
            S L+    L++S N+LT  +     +L  +     S N    L    
Sbjct: 220 PSGLKE---LIVSGNRLT-SLPVLPSELKELM---VSGNRLTSLPMLP 260

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.4 bits (141), Expect = 4e-09
 Identities = 28/164 (17%), Positives = 48/164 (29%), Gaps = 42/164 (25%)

Query: 166 NVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTF 225
             CL+      L++  +     +P  L    +  + + +N  +S +P             
Sbjct: 35  RACLN-NGNAVLNVGESGLT-TLPDCLPA-HITTLVIPDNNLTS-LPALPP--------- 81

Query: 226 AHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQS 285
                             +  + +S N L   LP     L +L++F           P  
Sbjct: 82  -----------------ELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHL----PAL 119

Query: 286 FSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGL 329
            S L     L +  NQLT          P +   + S N    L
Sbjct: 120 PSGLCK---LWIFGNQLTSLPVL----PPGLQELSVSDNQLASL 156

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 79.4 bits (196), Expect = 8e-16
 Identities = 28/225 (12%), Positives = 67/225 (29%), Gaps = 11/225 (4%)

Query: 106 DLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFP 165
           D          P+ L   + +    ++ N+   I    L     +    + ++R+     
Sbjct: 11  DGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67

Query: 166 NVCLSWTSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETI---GESTV 220
           +   S  SL +LDL  N+    +    F     L  + L  N + + +  T      + +
Sbjct: 68  DAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQT-LGVTSLFPNLTNL 125

Query: 221 SVVTFAHNNFSGCVPR-SIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFY 279
             +   +      + R     + ++NE+ +    L       +  ++ +       +   
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

Query: 280 GSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYN 324
             +      L S+  L L    L  +    +      +       
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 77.8 bits (192), Expect = 2e-15
 Identities = 34/232 (14%), Positives = 79/232 (34%), Gaps = 6/232 (2%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           +DL+ N I      +L   ++L +  + S+R   I  ++  +   +   D+S+N L  S 
Sbjct: 31  LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SL 89

Query: 165 PNVCLSW-TSLRYLDLRYNNFEGEVPRELFKM--KLDAIFLNNNRFSSWIPETIGESTVS 221
            +      +SL+YL+L  N ++      LF     L  + + N    S I         S
Sbjct: 90  SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS 149

Query: 222 --VVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFY 279
              +     +      +S+ ++ +++ + L  ++    L      L  +   +    +  
Sbjct: 150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA 209

Query: 280 GSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGN 331
                     E    +     + +    E   +L  +  +    +  +    
Sbjct: 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 39/203 (19%), Positives = 64/203 (31%), Gaps = 37/203 (18%)

Query: 105 IDLNGN---DIAGYFPAELGWLSDLALFHVNSNRFCGI--IPESLSNWKLIYEFDVSNNR 159
           +DL+ N   +      A  G    L    ++ N    +    E L   K +   D+S N 
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398

Query: 160 LVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGEST 219
                P+ C     +R+L+L        V   + +  L+ + ++NN   S          
Sbjct: 399 F-HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQ-TLEVLDVSNNNLDS-FSL------ 448

Query: 220 VSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFY 279
                                +P + E+ +S N L   LP        L V   S N   
Sbjct: 449 --------------------FLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLK 486

Query: 280 GSVPQSFSSLESIHRLVLSYNQL 302
                 F  L S+ ++ L  N  
Sbjct: 487 SVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 68.2 bits (167), Expect = 3e-12
 Identities = 40/264 (15%), Positives = 82/264 (31%), Gaps = 30/264 (11%)

Query: 108 NGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNV 167
           N    +     +   L+ L    + +        +SL + + I+   +  +         
Sbjct: 132 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF 191

Query: 168 CLSWTSLRYLDLRYNNFEG---------EVPRELFKMKLDAIFLNNNRFSSWIPETIGES 218
               +S+RYL+LR  N            EV   + K+      L +  F+  +       
Sbjct: 192 ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251

Query: 219 TVSVVTFAHNNFSG------CVPRSIGNMPNVNEIILSNNDLMGC-----LPSEIGWLKK 267
            +S V F     +G           +  +  V  + +    +        L +    L+K
Sbjct: 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311

Query: 268 LTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLT-GYVSEQIC--KLPNINNFTFSYN 324
           +      ++  +         L+S+  L LS N +   Y+    C    P++     S N
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 325 YFQGLGNECIPGSKEGGVFDDTSN 348
           + + +        K G +     N
Sbjct: 372 HLRSM-------QKTGEILLTLKN 388

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 78.9 bits (195), Expect = 8e-16
 Identities = 46/225 (20%), Positives = 76/225 (33%), Gaps = 30/225 (13%)

Query: 106 DLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFP 165
           +LN   +    P     L  L     NS      +PE   + K +   + +   L    P
Sbjct: 77  ELNNLGL-SSLPELPPHLESLVASC-NSLTE---LPELPQSLKSLLVDNNNLKALSDLPP 131

Query: 166 NVCLSWTSLRYLDLRYNNFEGEVPRELFKMK-LDAIFLNNNRFSSWIPETIGESTVSVVT 224
                   L YL +  N  E ++P EL     L  I ++NN     +P+      +  + 
Sbjct: 132 L-------LEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLKK-LPDLPPS--LEFIA 179

Query: 225 FAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQ 284
             +N     +P  + N+P +  I   NN L   LP     L+ +    A +N        
Sbjct: 180 AGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNIL--EELP 231

Query: 285 SFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGL 329
              +L  +  +    N L   + +    L  +N      NY   L
Sbjct: 232 ELQNLPFLTTIYADNNLLK-TLPDLPPSLEALN---VRDNYLTDL 272

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 74.6 bits (184), Expect = 2e-14
 Identities = 34/233 (14%), Positives = 72/233 (30%), Gaps = 37/233 (15%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           I  + N +    P     L  L +           +PE   +   +   +   + L    
Sbjct: 242 IYADNNLLK-TLPDLPPSLEALNVRDNYLTD----LPELPQSLTFLDVSENIFSGLSELP 296

Query: 165 PN-------------VCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWI 211
           PN             +C    SL  L++  N    E+P    +++   +  + N  +  +
Sbjct: 297 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE--RLIASFNHLAE-V 352

Query: 212 PETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVF 271
           PE      +  +   +N      P    ++ +     L  N  +  +P     LK+L   
Sbjct: 353 PELPQ--NLKQLHVEYNPLR-EFPDIPESVED-----LRMNSHLAEVPELPQNLKQL--- 401

Query: 272 DASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYN 324
              +N      P    S+E    L ++  ++             + +  F ++
Sbjct: 402 HVETNPLR-EFPDIPESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 73.1 bits (180), Expect = 5e-14
 Identities = 39/238 (16%), Positives = 75/238 (31%), Gaps = 34/238 (14%)

Query: 94  PDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEF 153
           P N + T +     + +++    P E   +     ++   + +    P      + +   
Sbjct: 5   PRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVS 63

Query: 154 DVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMK-LDAIFLNNNRFSSWIP 212
            + +                   L+L        +P     ++ L     + N  +  +P
Sbjct: 64  RLRDCLD-----------RQAHELELNNLGLS-SLPELPPHLESLV---ASCNSLTE-LP 107

Query: 213 ETIGE-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVF 271
           E      ++ V        S          P +  + +SNN L   LP E+     L + 
Sbjct: 108 ELPQSLKSLLVDNNNLKALS-------DLPPLLEYLGVSNNQLE-KLP-ELQNSSFLKII 158

Query: 272 DASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGL 329
           D  +NS    +P    SLE    +    NQL   + E +  LP +       N  + L
Sbjct: 159 DVDNNSL-KKLPDLPPSLEF---IAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLKKL 210

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.4 bits (191), Expect = 3e-15
 Identities = 44/259 (16%), Positives = 82/259 (31%), Gaps = 40/259 (15%)

Query: 97  SNITVVAGIDLNGNDIAGYFP-AELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDV 155
           + +T V+   L    I      +       L L +    +F  +  +SL           
Sbjct: 279 NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK------RLTF 332

Query: 156 SNNRLVGSFPNVCLSWTSLRYLDLRYNNFEG-EVPRELFK--MKLDAIFLNNNRFSSWIP 212
           ++N+   +F  V L   SL +LDL  N         +       L  + L+ N   + + 
Sbjct: 333 TSNKGGNAFSEVDL--PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MS 389

Query: 213 ETIGEST-VSVVTFAHNNFSGCVPRSI-GNMPNVNEIILSNNDLMGCLPSEIGWLKKLTV 270
                   +  + F H+N       S+  ++ N+  + +S+             L  L V
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

Query: 271 FDASSNSFYGSVPQ-------------------------SFSSLESIHRLVLSYNQLTGY 305
              + NSF  +                            +F+SL S+  L ++ NQL   
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509

Query: 306 VSEQICKLPNINNFTFSYN 324
                 +L ++       N
Sbjct: 510 PDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 34/232 (14%), Positives = 73/232 (31%), Gaps = 29/232 (12%)

Query: 106 DLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFP 165
           DL+ N +            +L +  ++      I   +  +   +    ++ N +     
Sbjct: 34  DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93

Query: 166 NVCLSWTSLRYLDLRYNNFEGEVPRELFKM-KLDAIFLNNNRFSSWIPETIGESTVSVVT 224
                 +SL+ L     N        +  +  L  + + +N   S               
Sbjct: 94  GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-FK------------ 140

Query: 225 FAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVF----DASSNSFYG 280
                    +P    N+ N+  + LS+N +     +++  L ++ +     D S N    
Sbjct: 141 ---------LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 281 SVPQSFSSLESIHRLVLSYNQLTGYVSEQIC-KLPNINNFTFSYNYFQGLGN 331
             P +F  +  +H+L L  N  +  V +     L  +         F+  GN
Sbjct: 192 IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 31/169 (18%), Positives = 61/169 (36%), Gaps = 10/169 (5%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPES-LSNWKLIYEFDVSNNRLVGS 163
           +DL+ N +     +    L  L       +    +   S   + + +   D+S+     +
Sbjct: 378 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 164 FPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM--KLDAIFLNNNRFSSWIPETIGESTVS 221
           F  +    +SL  L +  N+F+     ++F     L  + L+  +    +  T   S  S
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSS 495

Query: 222 VVT--FAHNNFSGCVPRSI-GNMPNVNEIILSNNDLMGCLPSEIGWLKK 267
           +     A N     VP  I   + ++ +I L  N    C    I +L +
Sbjct: 496 LQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWD-CSCPRIDYLSR 542

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 35/231 (15%), Positives = 82/231 (35%), Gaps = 14/231 (6%)

Query: 104 GIDLNGNDIAGYFPAELGWLSDLALFHVNSNR---FCGIIPESLSNWKLIYEFDVSNNRL 160
           G   N  ++  +  + L  L +L +          +   I +  +    +  F + +  +
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 161 VGSFPNVCL-SWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGEST 219
                      W  L  ++ ++  F     + L   +L      +N+  +     +   +
Sbjct: 295 ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL--KRLT---FTSNKGGN-AFSEVDLPS 348

Query: 220 VSVVTFAHN--NFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNS 277
           +  +  + N  +F GC  +S     ++  + LS N ++  + S    L++L   D   ++
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSN 407

Query: 278 FYGSVPQS-FSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQ 327
                  S F SL ++  L +S+       +     L ++     + N FQ
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.6 bits (155), Expect = 6e-11
 Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 29/162 (17%)

Query: 172 TSLRYLDLRYNNFEGEVPRELFKM--KLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNN 229
            S + LDL +N     +    F    +L  + L+     + I                  
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQT-IE----------------- 68

Query: 230 FSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEI-GWLKKLTVFDASSNSFYGSVPQSFSS 288
                  +  ++ +++ +IL+ N +   L       L  L    A   +           
Sbjct: 69  -----DGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 289 LESIHRLVLSYNQLT-GYVSEQICKLPNINNFTFSYNYFQGL 329
           L+++  L +++N +    + E    L N+ +   S N  Q +
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 3/108 (2%)

Query: 227 HNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSF 286
             NF   +P ++    +   + LS N L            +L V D S          ++
Sbjct: 16  ELNFYK-IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 287 SSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECI 334
            SL  +  L+L+ N +          L ++            L N  I
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 75.5 bits (186), Expect = 1e-14
 Identities = 32/233 (13%), Positives = 86/233 (36%), Gaps = 17/233 (7%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLV--- 161
           +  +        P  +   ++  L  +  NR   +  +  +++  + E +++ N +    
Sbjct: 16  VLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE 72

Query: 162 -GSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETIGES 218
            G+F N+     +LR L LR N  +  +P  +F     L  + ++ N+    + + + + 
Sbjct: 73  PGAFNNL----FNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQD 126

Query: 219 TVSVVT--FAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSN 276
             ++ +     N+      R+   + ++ ++ L   +L       +  L  L V      
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186

Query: 277 SFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGL 329
           +       SF  L  +  L +S+      ++       N+ + + ++     +
Sbjct: 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 32/207 (15%), Positives = 68/207 (32%), Gaps = 16/207 (7%)

Query: 106 DLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFP 165
            L  N +          LS+L    ++ N+   ++     +   +   +V +N LV    
Sbjct: 86  GLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YIS 144

Query: 166 NVCLS-WTSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPET-IGESTVS 221
           +   S   SL  L L   N    +P E       L  + L +   ++    +      + 
Sbjct: 145 HRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203

Query: 222 VVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGW-----LKKLTVFDASSN 276
           V+  +H  +   +  +     N+  + +++ +L     + + +     L  L   + S N
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-----TAVPYLAVRHLVYLRFLNLSYN 258

Query: 277 SFYGSVPQSFSSLESIHRLVLSYNQLT 303
                       L  +  + L   QL 
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 37/232 (15%), Positives = 79/232 (34%), Gaps = 16/232 (6%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRL---- 160
           +D++ N I          L +L    V  N    I   + S    + +  +    L    
Sbjct: 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168

Query: 161 VGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETI-GE 217
             +  ++      L  L LR+ N    +    FK   +L  + +++  +   +       
Sbjct: 169 TEALSHL----HGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223

Query: 218 STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEI-GWLKKLTVFDASSN 276
             ++ ++  H N +     ++ ++  +  + LS N +   +   +   L +L        
Sbjct: 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI-STIEGSMLHELLRLQEIQLVGG 282

Query: 277 SFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICK-LPNINNFTFSYNYFQ 327
                 P +F  L  +  L +S NQLT  + E +   + N+       N   
Sbjct: 283 QLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 47/244 (19%), Positives = 84/244 (34%), Gaps = 37/244 (15%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLV--- 161
           +    + +     A L     + L ++N  +   I   + +    I +  +  N +    
Sbjct: 50  VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 109

Query: 162 -GSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETIGES 218
              F NV      L  L L  N+    +PR +F    KL  + ++NN     I +   ++
Sbjct: 110 PHVFQNV----PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQA 163

Query: 219 TVS--VVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSN 276
           T S   +  + N  +  V   +  +P++    +S N L     S +     +   DAS N
Sbjct: 164 TTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHN 215

Query: 277 SFYGSVP-QSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYN--------YFQ 327
           S    V       L  +    L +N LT   +  +   P +     SYN         F 
Sbjct: 216 SI-NVVRGPVNVELTILK---LQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV 269

Query: 328 GLGN 331
            +  
Sbjct: 270 KMQR 273

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 43/249 (17%), Positives = 87/249 (34%), Gaps = 37/249 (14%)

Query: 105 IDLNGNDIAGYFPAELGW-LSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLV-- 161
           + +  N I  Y P  +   +  L +  +  N    +      N   +    +SNN L   
Sbjct: 98  LYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 156

Query: 162 --GSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK------------------MKLDAIF 201
              +F       TSL+ L L  N     V   L                    + ++ + 
Sbjct: 157 EDDTFQAT----TSLQNLQLSSNRLT-HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELD 211

Query: 202 LNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSE 261
            ++N  +  +   +    ++++   HNN +      + N P + E+ LS N+L   +   
Sbjct: 212 ASHNSINV-VRGPV-NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK-IMYH 266

Query: 262 I-GWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFT 320
               +++L     S+N    ++      + ++  L LS+N L  +V     +   + N  
Sbjct: 267 PFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 324

Query: 321 FSYNYFQGL 329
             +N    L
Sbjct: 325 LDHNSIVTL 333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 32/225 (14%), Positives = 84/225 (37%), Gaps = 23/225 (10%)

Query: 87  GVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSN 146
              C  +    +  V   + ++      YF  E   L++  +    ++    +    L +
Sbjct: 9   EYKCIDSNLQYDC-VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS 67

Query: 147 WKLIYEFDVSNNRLV----GSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM--KLDAI 200
           ++ +   ++++ ++      +F        +++ L + +N     +P  +F+    L  +
Sbjct: 68  FRQVELLNLNDLQIEEIDTYAFAYA----HTIQKLYMGFNAIR-YLPPHVFQNVPLLTVL 122

Query: 201 FLNNNRFSSWIPETIGESTVS--VVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCL 258
            L  N  SS +P  I  +T     ++ ++NN       +     ++  + LS+N L   +
Sbjct: 123 VLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THV 180

Query: 259 PSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLT 303
              +  +  L   + S N        + +   ++  L  S+N + 
Sbjct: 181 D--LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN 218

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.1 bits (154), Expect = 7e-11
 Identities = 41/207 (19%), Positives = 78/207 (37%), Gaps = 15/207 (7%)

Query: 133 SNRFCGIIPESLSNWKLIYEF--DVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPR 190
                  I  +L    + Y+   D+    +   F ++ L   + + +  + +    ++P 
Sbjct: 6   RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITL--NNQKIVTFKNSTMR-KLPA 62

Query: 191 ELFK--MKLDAIFLNNNRFSSWIPETI--GESTVSVVTFAHNNFSGCVPRSIGNMPNVNE 246
            L     +++ + LN+ +    I         T+  +    N      P    N+P +  
Sbjct: 63  ALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121

Query: 247 IILSNNDLMGCLPSEI-GWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGY 305
           ++L  NDL   LP  I     KLT    S+N+       +F +  S+  L LS N+LT  
Sbjct: 122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-- 178

Query: 306 VSEQICKLPNINNFTFSYNYFQGLGNE 332
               +  +P++ +   SYN    L   
Sbjct: 179 -HVDLSLIPSLFHANVSYNLLSTLAIP 204

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.6 bits (137), Expect = 8e-09
 Identities = 33/184 (17%), Positives = 65/184 (35%), Gaps = 35/184 (19%)

Query: 92  PAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIY 151
             P N  +T+   + L  N++       L     L    ++ N    I+       + + 
Sbjct: 221 RGPVNVELTI---LKLQHNNLTD-TAWLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLE 275

Query: 152 EFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM-KLDAIFLNNNRFSSW 210
              +SNNRLV +         +L+ LDL +N+    V R   +  +L+ ++L++N   + 
Sbjct: 276 RLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT- 332

Query: 211 IPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMG-CLPSEIGWLKKLT 269
           +                          +     +  + LS+ND     L +    + +  
Sbjct: 333 LK-------------------------LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPA 367

Query: 270 VFDA 273
           V DA
Sbjct: 368 VDDA 371

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 73.0 bits (179), Expect = 8e-14
 Identities = 43/249 (17%), Positives = 87/249 (34%), Gaps = 37/249 (14%)

Query: 105 IDLNGNDIAGYFPAELGW-LSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLV-- 161
           + +  N I  Y P  +   +  L +  +  N    +      N   +    +SNN L   
Sbjct: 104 LYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 162

Query: 162 --GSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK------------------MKLDAIF 201
              +F       TSL+ L L  N     V   L                    + ++ + 
Sbjct: 163 EDDTFQAT----TSLQNLQLSSNRLT-HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELD 217

Query: 202 LNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSE 261
            ++N  +  +   +    ++++   HNN +      + N P + E+ LS N+L   +   
Sbjct: 218 ASHNSINV-VRGPVNVE-LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK-IMYH 272

Query: 262 I-GWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFT 320
               +++L     S+N    ++      + ++  L LS+N L  +V     +   + N  
Sbjct: 273 PFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 330

Query: 321 FSYNYFQGL 329
             +N    L
Sbjct: 331 LDHNSIVTL 339

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.9 bits (176), Expect = 2e-13
 Identities = 32/225 (14%), Positives = 84/225 (37%), Gaps = 23/225 (10%)

Query: 87  GVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSN 146
              C  + +     V   + ++      YF  E   L++  +    ++    +    L +
Sbjct: 15  EYKCIDS-NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS 73

Query: 147 WKLIYEFDVSNNRLV----GSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK--MKLDAI 200
           ++ +   ++++ ++      +F        +++ L + +N     +P  +F+    L  +
Sbjct: 74  FRQVELLNLNDLQIEEIDTYAFAYA----HTIQKLYMGFNAIR-YLPPHVFQNVPLLTVL 128

Query: 201 FLNNNRFSSWIPETIGESTVS--VVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCL 258
            L  N  SS +P  I  +T     ++ ++NN       +     ++  + LS+N L   +
Sbjct: 129 VLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THV 186

Query: 259 PSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLT 303
              +  +  L   + S N        + +   ++  L  S+N + 
Sbjct: 187 D--LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN 224

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 66.5 bits (162), Expect = 9e-12
 Identities = 39/183 (21%), Positives = 74/183 (40%), Gaps = 13/183 (7%)

Query: 154 DVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWI 211
           D+    +   F ++ L   + + +  + +    ++P  L     +++ + LN+ +    I
Sbjct: 35  DMQTQDVYFGFEDITL--NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEE-I 90

Query: 212 PETI--GESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEI-GWLKKL 268
                    T+  +    N      P    N+P +  ++L  NDL   LP  I     KL
Sbjct: 91  DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKL 149

Query: 269 TVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQG 328
           T    S+N+       +F +  S+  L LS N+LT +V   +  +P++ +   SYN    
Sbjct: 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLLST 206

Query: 329 LGN 331
           L  
Sbjct: 207 LAI 209

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.9 bits (171), Expect = 2e-13
 Identities = 32/226 (14%), Positives = 64/226 (28%), Gaps = 21/226 (9%)

Query: 119 ELGWLSDLALFHVNSNRFCGIIPESLSNWKL--IYEFDVSNNRLVGSFPNV----CLSWT 172
            +  +S L    + +    G  P  L       +   ++ N         +         
Sbjct: 90  RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149

Query: 173 SLRYLDLRYNNFEGEVPRELFKMK-LDAIFLNNNRFSSWIP--ETIGESTVS---VVTFA 226
            L+ L +   +       ++     L  + L++N           +         V+   
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209

Query: 227 HNNF---SGCVPRSIGNMPNVNEIILSNNDLMGCLPSEI-GWLKKLTVFDASSNSFYGSV 282
           +      SG           +  + LS+N L     +    W  +L   + S        
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP 269

Query: 283 PQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQG 328
               + L  +    LSYN+L    +    +LP + N +   N F  
Sbjct: 270 KGLPAKLSVLD---LSYNRLDR--NPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.1 bits (148), Expect = 2e-10
 Identities = 34/183 (18%), Positives = 70/183 (38%), Gaps = 17/183 (9%)

Query: 169 LSWTSLRYLDLRYNNFEGEVPRELFKM---KLDAIFLNNNRFS---SWIPETIG--ESTV 220
           L  + L+ L L      G  P  L +     L+ + L N  ++   +W+ E     +  +
Sbjct: 92  LGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGL 151

Query: 221 SVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMG-------CLPSEIGWLKKLTVFDA 273
            V++ A  +        +   P ++ + LS+N  +G         P +   L+ L + +A
Sbjct: 152 KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211

Query: 274 SSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLP-NINNFTFSYNYFQGLGNE 332
              +  G      ++   +  L LS+N L        C  P  +N+   S+   + +  +
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-PK 270

Query: 333 CIP 335
            +P
Sbjct: 271 GLP 273

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 70.6 bits (172), Expect = 6e-13
 Identities = 24/151 (15%), Positives = 37/151 (24%), Gaps = 2/151 (1%)

Query: 379 GGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSP 438
           G  + P        P                 P    P                  ++  
Sbjct: 17  GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQA 76

Query: 439 NPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPS 498
                +  + +     P     P            Q  P +  +   PS        P +
Sbjct: 77  TTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMN 136

Query: 499 VKYPPPV--QSPPPPTPVQSPPPPVHSPPPP 527
             YP  +  + PPP T +  PPPP+  PP  
Sbjct: 137 QLYPIDLLTELPPPITDLTLPPPPLVIPPER 167

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 70.6 bits (172), Expect = 7e-13
 Identities = 17/140 (12%), Positives = 26/140 (18%)

Query: 388 STPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRV 447
           S   K   P       Q       P    PP               P     P     + 
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61

Query: 448 RSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQS 507
            +    Q  +    A      +               P  P+    P     +       
Sbjct: 62  LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAY 121

Query: 508 PPPPTPVQSPPPPVHSPPPP 527
             P   +     P++   P 
Sbjct: 122 GQPSAAMGQNMRPMNQLYPI 141

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 57.5 bits (138), Expect = 6e-09
 Identities = 23/132 (17%), Positives = 29/132 (21%)

Query: 379 GGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSP 438
           G    P   + P        TPA EQ        T S             P        P
Sbjct: 43  GQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVP 102

Query: 439 NPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPS 498
                  + +      P      A            YP   +   PPP      PPPP  
Sbjct: 103 VQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLV 162

Query: 499 VKYPPPVQSPPP 510
           +     +     
Sbjct: 163 IPPERMLVPSEL 174

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 70.1 bits (171), Expect = 1e-12
 Identities = 50/199 (25%), Positives = 75/199 (37%), Gaps = 19/199 (9%)

Query: 343  FDDTSNCLAQRPSQKWATTCSPVVSNPVD-----CSKDVCLGGGSPPSAPSTPPKPSTPT 397
            + + S  +      K     SP+V +  +                  ++P      +  +
Sbjct: 1473 YSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTS 1532

Query: 398  PTPAPEQRTPTPAPPTPSP------PPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHT 451
            P         +P  PT SP      P  P+  P +P  +P  P  SP  P  +    S++
Sbjct: 1533 PGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1592

Query: 452  PPQPWR-PSAPAPEPSKPLLPPVQYPPSSVQSTPP-PSPLPQSPPPPP-SVKYPPPVQSP 508
            P  P   P++P+  P+ P      Y P+S   +P  PS  P SP   P S  Y P   S 
Sbjct: 1593 PTSPSYSPTSPSYSPTSP-----SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1647

Query: 509  PPPTPVQSPPPPVHSPPPP 527
             P +P  SP  P +SP  P
Sbjct: 1648 SPTSPSYSPTSPAYSPTSP 1666

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 67.8 bits (165), Expect = 6e-12
 Identities = 52/160 (32%), Positives = 74/160 (46%), Gaps = 12/160 (7%)

Query: 379  GGGSPPSAPSTPP-KPSTPTPTPAPEQRTPT-----PAPPTPSPPPPPTPKPLTPVPTPL 432
            G  SP  +P++P   P++P  +P     +PT     P  P+ SP  P    P +P  +P 
Sbjct: 1536 GVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPT 1594

Query: 433  PPVNSPNPPPRNWRVRSHTPPQP-WRPSAPAPEPSKPLLPP--VQYPPSSVQSTP-PPSP 488
             P  SP  P  +    S++P  P + P++P+  P+ P   P    Y P+S   +P  PS 
Sbjct: 1595 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1654

Query: 489  LPQSPP-PPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
             P SP   P S  Y P   S  P +P  SP  P +SP  P
Sbjct: 1655 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1694

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 63.2 bits (153), Expect = 2e-10
 Identities = 45/158 (28%), Positives = 66/158 (41%), Gaps = 9/158 (5%)

Query: 379  GGGSPPSAPSTPPKPSTPTPTPAPEQRTPT-PAP-PTPSPPPPPTPK--PLTPVPTPLPP 434
             G    +  S     S+P  +P     +PT PA  PT     P +P   P +P  +P  P
Sbjct: 1523 FGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1582

Query: 435  VNSPNPPPRNWRVRSHTPPQP-WRPSAPAPEPSKPLLPPVQ--YPPSSVQSTPPPSPLPQ 491
              SP  P  +    S++P  P + P++P+  P+ P   P    Y P+S   +P       
Sbjct: 1583 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1642

Query: 492  SPP--PPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
            + P   P S  Y P   +  P +P  SP  P +SP  P
Sbjct: 1643 TSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSP 1680

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 58.2 bits (140), Expect = 5e-09
 Identities = 33/170 (19%), Positives = 48/170 (28%), Gaps = 13/170 (7%)

Query: 362  CSPVVSNPVDCSKDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPT 421
                +        +    GG  P +  +    +               +    +     T
Sbjct: 1450 LVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFT 1509

Query: 422  PKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPV--QYPPSS 479
                        P  +    P             +  S+P   P+ P   P    Y P+S
Sbjct: 1510 AYGGADYGEATSPFGAYGEAPT---------SPGFGVSSPGFSPTSPTYSPTSPAYSPTS 1560

Query: 480  VQSTP-PPSPLPQSPPP-PPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
               +P  PS  P SP   P S  Y P   S  P +P  SP  P +SP  P
Sbjct: 1561 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1610

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 57.8 bits (139), Expect = 6e-09
 Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 10/148 (6%)

Query: 381  GSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNP 440
             + PS   T P  S  +P+ +P   + +P  P+ SP  P    P +P  +P  P  SP  
Sbjct: 1593 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTS 1651

Query: 441  PPRNWRVRSHTPPQP-WRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSV 499
            P  +    +++P  P + P++P+  P+     P   P S   S   P+  P SP   P+ 
Sbjct: 1652 PSYSPTSPAYSPTSPSYSPTSPSYSPT----SPSYSPTSPSYSPTSPNYSPTSPSYSPT- 1706

Query: 500  KYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
                P  SP  P          H+    
Sbjct: 1707 ---SPGYSPGSPAYSPKQDEQKHNENEN 1731

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 57.4 bits (138), Expect = 1e-08
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 17/129 (13%)

Query: 381  GSPPSAPSTP-PKPSTPTPTPAPEQRTPTPAPPTPSPPP--PPTPK--PLTPVPTPLPPV 435
             SP  +P++P   P++P+ +P     +PT    +P+ P   P +P   P +P  +P  P 
Sbjct: 1615 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPS 1674

Query: 436  NSPNPPPRNWRVRSHTPPQP-WRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPP 494
             SP  P  +    S++P  P + P++P+  P+ P      Y P S      P+  P+   
Sbjct: 1675 YSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSP-----GYSPGS------PAYSPKQDE 1723

Query: 495  PPPSVKYPP 503
               +     
Sbjct: 1724 QKHNENENS 1732

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 8/137 (5%)

Query: 379  GGGSPPSAPSTPP-KPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNS 437
               SP  +P++P   P++P+ +P     +PT    +P+ P      P +P  +P  P  S
Sbjct: 1599 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS---PTSPSYSPTSPSYS 1655

Query: 438  PNPPPRNWRVRSHTPPQP-WRPSAPAPEPSKPL---LPPVQYPPSSVQSTPPPSPLPQSP 493
            P  P  +    S++P  P + P++P+  P+ P      P   P S   S   P   P SP
Sbjct: 1656 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSP 1715

Query: 494  PPPPSVKYPPPVQSPPP 510
               P        ++   
Sbjct: 1716 AYSPKQDEQKHNENENS 1732

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 70.1 bits (171), Expect = 1e-12
 Identities = 50/153 (32%), Positives = 72/153 (47%), Gaps = 8/153 (5%)

Query: 382  SPPSAPSTP--PKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPN 439
            SP S   +P  P  S  +P+ +P   + +P  P+ SP  P +  P +P  +P  P  SP 
Sbjct: 1593 SPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPT 1651

Query: 440  PPPRNWRVRSHTPPQP-WRPSAPAPEPSKPLLPPVQ--YPPSSVQSTPP-PSPLPQSPP- 494
             P  +    S++P  P + P++P+  P+ P   P    Y P+S   +P  PS  P SP  
Sbjct: 1652 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1711

Query: 495  PPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
             P S  Y P   S  P +P  SP  P +SP  P
Sbjct: 1712 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1744

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 67.4 bits (164), Expect = 7e-12
 Identities = 50/174 (28%), Positives = 72/174 (41%), Gaps = 16/174 (9%)

Query: 363  SPVVSNPVDCSKDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPT-----PAPPTPSPP 417
            SP  ++P   +     G  SP  +PS+P   ++P   P+    +PT     P  P+ SP 
Sbjct: 1536 SPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPT 1595

Query: 418  PPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPP--VQY 475
             P    P +P  +   P  SP  P       S T P  + P++P+  P+ P   P    Y
Sbjct: 1596 SPS-YSPTSPSYSATSPSYSPTSP-----SYSPTSPS-YSPTSPSYSPTSPSYSPTSPSY 1648

Query: 476  PPSSVQSTPPPSPLPQSPPP--PPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
             P+S   +P       + P   P S  Y P   S  P +P  SP  P +SP  P
Sbjct: 1649 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1702

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 63.6 bits (154), Expect = 1e-10
 Identities = 51/169 (30%), Positives = 72/169 (42%), Gaps = 23/169 (13%)

Query: 382  SPPSAPSTPPKPSTPTPTPAPEQRTPT-----PAPPTPSP------PPPPTPKPLTPVPT 430
            SP  + S    PS+P+ +P     +PT     P  P+ SP         P+  P +P  +
Sbjct: 1562 SPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYS 1621

Query: 431  PLPPVNSPNPPPRNWRVRSHTPPQP--------WRPSAPAPEPSKPLLPPV--QYPPSSV 480
            P  P  SP  P  +    S++P  P        + P++P+  P+ P   P    Y P+S 
Sbjct: 1622 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1681

Query: 481  QSTP-PPSPLPQSPP-PPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
              +P  PS  P SP   P S  Y P   S  P +P  SP  P +SP  P
Sbjct: 1682 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1730

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 55.5 bits (133), Expect = 3e-08
 Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 20/147 (13%)

Query: 382  SPPSAPSTPP-KPSTPTPTPAPEQRTPT-----PAPPTPSPPPPPTPKPLTPVPTPLPPV 435
            SP  +P++P   P++P+ +P     +PT     P  P+ S P  P+  P +P  +P  P 
Sbjct: 1617 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPS 1675

Query: 436  NSPNPPPRNWRVRSHTPPQP-WRPSAPAPEPSKPLLPPVQYPPSSVQSTP-PPSPLPQSP 493
             SP  P  +    S++P  P + P++P+  P+ P      Y P+S   +P  PS  P SP
Sbjct: 1676 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-----SYSPTSPSYSPTSPSYSPTSP 1730

Query: 494  PPPPSVKYPPPVQSPPPPTPVQSPPPP 520
                   Y P   S  P +P  SP  P
Sbjct: 1731 ------SYSPTSPSYSPTSPSYSPTSP 1751

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 53.5 bits (128), Expect = 1e-07
 Identities = 39/162 (24%), Positives = 51/162 (31%), Gaps = 12/162 (7%)

Query: 378  LGGGSPPSAPSTPPKPSTPTPTPAPEQRTP---TPAPPTPSPPPPPTPKPLTPVPTPL-P 433
            L  G+      +P   S    +P     +P     +               +P      P
Sbjct: 1478 LPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSP 1537

Query: 434  PVNSPNPPP----RNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQ---YPPSSVQSTPPP 486
               SP              S++P  P   ++PA  PS P   P      P S   S   P
Sbjct: 1538 GYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSP 1597

Query: 487  SPLPQSP-PPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
            S  P SP     S  Y P   S  P +P  SP  P +SP  P
Sbjct: 1598 SYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1639

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 31/136 (22%), Positives = 36/136 (26%), Gaps = 13/136 (9%)

Query: 399  TPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRP 458
            T    +   TP   +P         P     +PL    S                     
Sbjct: 1475 TSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREG------FGDYGLLGAA 1528

Query: 459  SAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPP--PVQSP-----PPP 511
            S      S     P     S       PS  P SP    S  Y P  P  SP      P 
Sbjct: 1529 SPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPT 1588

Query: 512  TPVQSPPPPVHSPPPP 527
            +P  SP  P +SP  P
Sbjct: 1589 SPSYSPTSPSYSPTSP 1604

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 52/267 (19%), Positives = 91/267 (34%), Gaps = 33/267 (12%)

Query: 83  CSYYGVFCAPAPDNSNITVV-AGI-------DLNGNDIAGYFPAELGWLSDLALFHVNSN 134
           C    V C     +  +  V   +       DL  N I      +   L +L    + +N
Sbjct: 31  CHLRVVQC----SDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 86

Query: 135 RFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK 194
           +   I P + +    +    +S N+L    P       +L+ L +  N    +V + +F 
Sbjct: 87  KISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPK--TLQELRVHENEIT-KVRKSVFN 142

Query: 195 --MKLDAIFLNNNRF-SSWIPETI--GESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIIL 249
              ++  + L  N   SS I      G   +S +  A  N +  +P+  G  P++ E+ L
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQ--GLPPSLTELHL 199

Query: 250 SNNDLM----GCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGY 305
             N +       L      L  L     S NS       S ++   +  L L+ N+L   
Sbjct: 200 DGNKITKVDAASLKG----LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 254

Query: 306 VSEQICKLPNINNFTFSYNYFQGLGNE 332
           V   +     I       N    +G+ 
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISAIGSN 281

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 33/209 (15%), Positives = 67/209 (32%), Gaps = 20/209 (9%)

Query: 106 DLNGNDIAGYFPAELGWLSDLALFHVNSNRF--CGIIPESLSNWKLIYEFDVSNNRLVGS 163
            ++ N+I     +    L+ + +  + +N     GI   +    K +    +++  +  +
Sbjct: 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-T 185

Query: 164 FPNVCLSWTSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETI--GEST 219
            P       SL  L L  N    +V     K    L  + L+ N  S+ +          
Sbjct: 186 IPQGLPP--SLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTPH 241

Query: 220 VSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDL------MGCLPSEIGWLKKLTVFDA 273
           +  +   +N     VP  + +   +  + L NN++        C P         +    
Sbjct: 242 LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300

Query: 274 SSNSF-YGSVPQS-FSSLESIHRLVLSYN 300
            SN   Y  +  S F  +     + L   
Sbjct: 301 FSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 67.5 bits (164), Expect = 4e-12
 Identities = 25/140 (17%), Positives = 33/140 (23%), Gaps = 8/140 (5%)

Query: 385 SAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRN 444
           S+       S   P               PS               P   V  P PPP  
Sbjct: 3   SSHHHHHHSSGLVP--------RGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPP 54

Query: 445 WRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPP 504
                + P      S        P  P       +V+    P P   +  PP + +  P 
Sbjct: 55  APAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPG 114

Query: 505 VQSPPPPTPVQSPPPPVHSP 524
           +   P P P       V   
Sbjct: 115 LYHHPVPEPDPVRVEEVSRR 134

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 53.6 bits (128), Expect = 9e-08
 Identities = 16/129 (12%), Positives = 28/129 (21%), Gaps = 3/129 (2%)

Query: 350 LAQRPSQKWATTCSPVVSNPVDCSKDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTP 409
           +         ++      + +           S   A   PP  + P P P P    P  
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPP-VTVPDPAPPPPP-APAA 58

Query: 410 APPTPSPPPPPTPKPLTPVPTPLPPVN-SPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKP 468
             P  +       + +   PT     + +P                P       P     
Sbjct: 59  GNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHH 118

Query: 469 LLPPVQYPP 477
            +P      
Sbjct: 119 PVPEPDPVR 127

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 44.4 bits (104), Expect = 6e-05
 Identities = 17/123 (13%), Positives = 27/123 (21%), Gaps = 8/123 (6%)

Query: 352 QRPSQKWATTCSPVVSNPVDCSKDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAP 411
                  + + +   S+ +             P  P  P   + P               
Sbjct: 18  GSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDS--VLQRIL 75

Query: 412 PTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLP 471
             P+ P   +  P         P    + PP            P     P PEP    + 
Sbjct: 76  RGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAG------RAVPGLYHHPVPEPDPVRVE 129

Query: 472 PVQ 474
            V 
Sbjct: 130 EVS 132

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 45/262 (17%), Positives = 92/262 (35%), Gaps = 43/262 (16%)

Query: 82  VCSYYGVFCAPAPDNSNITVV-AGI-------DLNGNDIAGYFPAELGWLSDLALFHVNS 133
            CS   + C    ++  +T V  GI       +L  N +          L+ L    ++S
Sbjct: 6   SCSGTEIRC----NSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSS 61

Query: 134 NRFCGIIPESLSNWKL--IYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRE 191
           N        S S++    +   D+S N ++ +  +  L    L +LD +++N +      
Sbjct: 62  NGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS 120

Query: 192 LFK--MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIIL 249
           +F     L  + +++          I              F+G        + ++  + +
Sbjct: 121 VFLSLRNLIYLDISHTHTRV-AFNGI--------------FNG--------LSSLEVLKM 157

Query: 250 SNNDLMGCLPSEI-GWLKKLTVFDASSNSFYGSVPQ-SFSSLESIHRLVLSYNQLTGYVS 307
           + N        +I   L+ LT  D S       +   +F+SL S+  L +S+N      +
Sbjct: 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216

Query: 308 EQICKLPNINNFTFSYNYFQGL 329
                L ++    +S N+    
Sbjct: 217 FPYKCLNSLQVLDYSLNHIMTS 238

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 38/206 (18%), Positives = 69/206 (33%), Gaps = 36/206 (17%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPES----LSNWKLIYEFDVSNNRL 160
           +DL+ N +     +    L  L       +    +   S    L N  LIY  D+S+   
Sbjct: 83  LDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN--LIY-LDISHTHT 138

Query: 161 VGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM--KLDAIFLNNNRFSSWIPETIGES 218
             +F  +    +SL  L +  N+F+     ++F     L  + L+  +    +       
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSP----- 192

Query: 219 TVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGW-LKKLTVFDASSNS 277
                      F+         + ++  + +S+N+    L +     L  L V D S N 
Sbjct: 193 ---------TAFNS--------LSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNH 234

Query: 278 FYGSVPQSFSSL-ESIHRLVLSYNQL 302
              S  Q       S+  L L+ N  
Sbjct: 235 IMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 30/184 (16%), Positives = 61/184 (33%), Gaps = 18/184 (9%)

Query: 172 TSLRYLDLRYNNFEGEVPRELFKM--KLDAIFLNNNRFSSW-IPETIGESTVSVVT--FA 226
           +S   L+L  N  +  +P  +F    +L  + L++N  S           T S+     +
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 227 HNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEI-GWLKKLTVFDASSNSFYGSVPQS 285
            N     +  +   +  +  +   +++L       +   L+ L   D S      +    
Sbjct: 87  FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

Query: 286 FSSLESIHRLVLSYNQLTGYVSEQI-CKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFD 344
           F+ L S+  L ++ N         I  +L N+     S    + L             F+
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL---------SPTAFN 196

Query: 345 DTSN 348
             S+
Sbjct: 197 SLSS 200

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 31/200 (15%), Positives = 65/200 (32%), Gaps = 32/200 (16%)

Query: 106 DLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRL-VGSF 164
            ++ N +    P  L   S L    ++ NR   +     S  + +   ++  N L    F
Sbjct: 108 YISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF 164

Query: 165 PNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVT 224
                    L YL +        +P++L +  L+ + L++N+  + I             
Sbjct: 165 EPGAFDGLKLNYLRISEAKLT-GIPKDLPE-TLNELHLDHNKIQA-IEL----------- 210

Query: 225 FAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEI-GWLKKLTVFDASSNSFYGSVP 283
               +              +  + L +N +   + +    +L  L      +N     VP
Sbjct: 211 ---EDLLR--------YSKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNNKLS-RVP 257

Query: 284 QSFSSLESIHRLVLSYNQLT 303
                L+ +  + L  N +T
Sbjct: 258 AGLPDLKLLQVVYLHTNNIT 277

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 31/262 (11%), Positives = 73/262 (27%), Gaps = 37/262 (14%)

Query: 95  DNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFD 154
           D S+ T +  +D + N        ++   + L     + N+   +    +S  KL+   +
Sbjct: 143 DVSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLN 197

Query: 155 VSNNRL----VGSFPN---VCLSW-----------TSLRYLDLRYNNFEGEVPRELFKMK 196
              N +    +        +  S            T L Y D   N    E+       K
Sbjct: 198 CDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLT-ELDVSTLS-K 255

Query: 197 LDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMG 256
           L  +              +  +T  ++ F            + +   +  +      +  
Sbjct: 256 LTTLHCIQTDLLEI---DLTHNT-QLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT- 310

Query: 257 CLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNI 316
               ++    KL     ++      +    S    +  L      +  +    + K+P +
Sbjct: 311 --ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQDF--SSVGKIPAL 363

Query: 317 NNFTFSYNYFQGLGNECIPGSK 338
           NN   +      +  E +  + 
Sbjct: 364 NNNFEAEGQTITMPKETLTNNS 385

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 37/240 (15%), Positives = 78/240 (32%), Gaps = 37/240 (15%)

Query: 96  NSNITVVAGI---------DLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSN 146
           NS+IT + GI             N+I      +L   ++L     +SN+   +    L+ 
Sbjct: 51  NSSITDMTGIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNLDVTPLTK 107

Query: 147 WKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNR 206
                  +   N+L             L YL+   N    E+       +L  +  + N+
Sbjct: 108 LT---YLNCDTNKL-TKLDVSQN--PLLTYLNCARNTLT-EIDVSHNT-QLTELDCHLNK 159

Query: 207 FSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGW-- 264
             +   +   ++ ++ +  + N  +      +     +N +    N++     +++    
Sbjct: 160 KIT-KLDVTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNI-----TKLDLNQ 210

Query: 265 LKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYN 324
             +LT  D SSN     +    + L  +     S N LT      +  L  +        
Sbjct: 211 NIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQT 264

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 8/104 (7%)

Query: 226 AHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQS 285
           A          S   +  +  +   N+ +     + I  L  LT    +SN+   ++   
Sbjct: 26  AAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNI-TTLD-- 80

Query: 286 FSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGL 329
            S   ++  L    N+LT   +  +  L  +       N    L
Sbjct: 81  LSQNTNLTYLACDSNKLT---NLDVTPLTKLTYLNCDTNKLTKL 121

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 18/159 (11%), Positives = 51/159 (32%), Gaps = 16/159 (10%)

Query: 172 TSLRYLDLRYNNFEGEVPRELFKMK-LDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNF 230
            +L  LD   ++   ++   + K+  L  +   +N  ++ +  +   + ++ +    N  
Sbjct: 42  ATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNNITT-LDLS-QNTNLTYLACDSNKL 97

Query: 231 SGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLE 290
           +      +  +  +  +    N L      ++     LT  + + N+    +    S   
Sbjct: 98  TN---LDVTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT-EID--VSHNT 148

Query: 291 SIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGL 329
            +  L    N+        +     +     S+N    L
Sbjct: 149 QLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFNKITEL 185

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.5 bits (150), Expect = 3e-11
 Identities = 24/154 (15%), Positives = 56/154 (36%), Gaps = 7/154 (4%)

Query: 172 TSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGE-STVSVVTFAHNNF 230
            SL Y+ L   N       E     +  + +NN   +++ P  I   S +  +     + 
Sbjct: 44  NSLTYITLANINVTDLTGIEYAH-NIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDV 100

Query: 231 SGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLE 290
           +     ++  + ++  + +S++     + ++I  L K+   D S N     +     +L 
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLP 159

Query: 291 SIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYN 324
            +  L + ++ +  Y    I   P +N       
Sbjct: 160 ELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.7 bits (109), Expect = 9e-06
 Identities = 25/168 (14%), Positives = 52/168 (30%), Gaps = 38/168 (22%)

Query: 95  DNSNITVVAGI---------DLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLS 145
            N N+T + GI          +N      Y P  +  LS+L    +           +LS
Sbjct: 52  ANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLS 109

Query: 146 NWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMK-LDAIFLNN 204
               +   D+S++    S      +   +  +DL YN    ++   L  +  L ++ +  
Sbjct: 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF 168

Query: 205 NRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNN 252
           +    +                           I + P +N++   + 
Sbjct: 169 DGVHDYRG-------------------------IEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 16/105 (15%), Positives = 40/105 (38%), Gaps = 2/105 (1%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           + + G D+       L  L+ L L  ++ +     I   ++    +   D+S N  +   
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 165 PNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSS 209
             +  +   L+ L+++++        E F  KL+ ++  +     
Sbjct: 153 MPLK-TLPELKSLNIQFDGVHDYRGIEDFP-KLNQLYAFSQTIGG 195

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 62.3 bits (150), Expect = 3e-10
 Identities = 12/135 (8%), Positives = 20/135 (14%), Gaps = 3/135 (2%)

Query: 393 PSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTP 452
                 T  PE         +                                   + +P
Sbjct: 18  YFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASP 77

Query: 453 PQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPT 512
                 +    E +    P      +S      PS   +      +   P          
Sbjct: 78  ASNEAATTETAEAASAAKPE---EKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESK 134

Query: 513 PVQSPPPPVHSPPPP 527
           P            P 
Sbjct: 135 PAAEANKTEKEVQPD 149

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 60.7 bits (146), Expect = 7e-10
 Identities = 13/145 (8%), Positives = 27/145 (18%), Gaps = 10/145 (6%)

Query: 384 PSAPSTPPKPSTPT-PTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPP 442
                    P      T      +                +             S    P
Sbjct: 18  YFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASP 77

Query: 443 RNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYP 502
            +              +A A   +KP     +    +  +   P    ++   P +    
Sbjct: 78  AS-------NEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEAT--N 128

Query: 503 PPVQSPPPPTPVQSPPPPVHSPPPP 527
              +S P     ++        P  
Sbjct: 129 QGDESKPAAEANKTEKEVQPDVPKN 153

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 53.0 bits (126), Expect = 2e-07
 Identities = 12/127 (9%), Positives = 23/127 (18%), Gaps = 5/127 (3%)

Query: 401 APEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSA 460
              Q   T  P                        N       N         +    ++
Sbjct: 17  LYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHAREN----KLEKAEGVATAS 72

Query: 461 PAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPP 520
               P+       +   ++  + P      +     PS +  P         P  +    
Sbjct: 73  ETASPASNEAATTETAEAASAAKPEEKA-SEVVAETPSAEAKPKSDKETEAKPEATNQGD 131

Query: 521 VHSPPPP 527
              P   
Sbjct: 132 ESKPAAE 138

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 46.9 bits (110), Expect = 1e-05
 Identities = 12/145 (8%), Positives = 26/145 (17%), Gaps = 7/145 (4%)

Query: 383 PPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPP 442
             ++ +  P  +    T   E  +        S     TP       +       P    
Sbjct: 69  ATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATN 128

Query: 443 RNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYP 502
           +                A   E       P     +        +   +     P  +  
Sbjct: 129 Q-------GDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGARED 181

Query: 503 PPVQSPPPPTPVQSPPPPVHSPPPP 527
             +         +     V+     
Sbjct: 182 DAINRGSVVLASRRTGHLVNEKASK 206

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 44.6 bits (104), Expect = 8e-05
 Identities = 15/145 (10%), Positives = 27/145 (18%), Gaps = 4/145 (2%)

Query: 382 SPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPP 441
           SP S  +   + +       PE++       TPS    P            P   +    
Sbjct: 76  SPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKS---DKETEAKPEATNQGDE 132

Query: 442 PRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKY 501
            +     + T  +         E +       ++          P           SV  
Sbjct: 133 SKPAAEANKTEKEVQPDVPKNTEKTLKPKEI-KFNSWEELLKWEPGAREDDAINRGSVVL 191

Query: 502 PPPVQSPPPPTPVQSPPPPVHSPPP 526
                                    
Sbjct: 192 ASRRTGHLVNEKASKEAKVQALSNT 216

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 59.7 bits (144), Expect = 3e-10
 Identities = 33/147 (22%), Positives = 40/147 (27%), Gaps = 6/147 (4%)

Query: 381 GSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNP 440
           G PP        P           R      P   P P        PV     P      
Sbjct: 84  GPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMT 143

Query: 441 PPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVK 500
           P         T       +  +   +    PP +  P        P P    PPP     
Sbjct: 144 PQGR-----GTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPP 198

Query: 501 YPPPVQSPPPP-TPVQSPPPPVHSPPP 526
             PP+  PP   TP+  PPP +  PPP
Sbjct: 199 MGPPMGIPPGRGTPMGMPPPGMRPPPP 225

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 55.4 bits (133), Expect = 6e-09
 Identities = 28/139 (20%), Positives = 37/139 (26%), Gaps = 4/139 (2%)

Query: 393 PSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTP-VPTPLPPVNSP---NPPPRNWRVR 448
            S     P P+       P   +   P   +     +P  +P   +P     P R     
Sbjct: 78  VSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGP 137

Query: 449 SHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSP 508
           S     P      A   +         P         P P      PPP +  PPP   P
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197

Query: 509 PPPTPVQSPPPPVHSPPPP 527
           P   P+  PP        P
Sbjct: 198 PMGPPMGIPPGRGTPMGMP 216

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 52.3 bits (125), Expect = 7e-08
 Identities = 26/147 (17%), Positives = 37/147 (25%), Gaps = 3/147 (2%)

Query: 365 VVSNPVDCSKDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKP 424
           V   P   +    +        P          P   P  + P            P+ + 
Sbjct: 82  VEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQV 141

Query: 425 LTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTP 484
           +TP         +           +  PP    P  P    + P   P    P      P
Sbjct: 142 MTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPP---PGMMGPPPGMRPP 198

Query: 485 PPSPLPQSPPPPPSVKYPPPVQSPPPP 511
              P+   P     +  PPP   PPPP
Sbjct: 199 MGPPMGIPPGRGTPMGMPPPGMRPPPP 225

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 49.3 bits (117), Expect = 8e-07
 Identities = 29/122 (23%), Positives = 38/122 (31%), Gaps = 9/122 (7%)

Query: 379 GGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSP 438
            G   P AP+    P      P+ +  TP       +     T           P    P
Sbjct: 116 AGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGP 175

Query: 439 NPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPS 498
            PP             P     P P    P+ PP+  PP   + TP   P P   PPPP 
Sbjct: 176 PPPMGR-------GAPPPGMMGPPPGMRPPMGPPMGIPPG--RGTPMGMPPPGMRPPPPG 226

Query: 499 VK 500
           ++
Sbjct: 227 MR 228

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.2 bits (146), Expect = 5e-10
 Identities = 38/207 (18%), Positives = 71/207 (34%), Gaps = 20/207 (9%)

Query: 105 IDLNGNDIAGYFPAE----LGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRL 160
           I+++ ND+     A+    L  L ++ +    +N    I PE+  N   +    +SN  +
Sbjct: 59  IEISQNDVLEVIEADVFSNLPKLHEIRIE--KANNLLYINPEAFQNLPNLQYLLISNTGI 116

Query: 161 VGSFPN-VCLSWTSLRYLDLRYNNFEGEVPRELFK---MKLDAIFLNNNRFSSWIPETI- 215
               P+   +       LD++ N     + R  F     +   ++LN N     I  +  
Sbjct: 117 K-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAF 174

Query: 216 -GESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEI-GWLKKLTVFDA 273
            G     +    +NN                 + +S   +   LPS     LKKL     
Sbjct: 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARST 233

Query: 274 SSNSFYGSVPQSFSSLESIHRLVLSYN 300
            +      +P +   L ++    L+Y 
Sbjct: 234 YNLK---KLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 25/211 (11%), Positives = 66/211 (31%), Gaps = 21/211 (9%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLV--- 161
                + +    P++L    +         +   I   + S +  + + ++S N ++   
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 162 --GSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM--KLDAIFLNNNRFSSWIPET--I 215
               F N+      L  + +   N    +  E F+    L  + ++N      +P+   I
Sbjct: 71  EADVFSNL----PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKI 125

Query: 216 GESTVSVVTFAHNNFSGCVPRSI--GNMPNVNEIILSNNDLMGCLPSEI-GWLKKLTVFD 272
                 ++    N     + R+   G       + L+ N +   + +      +   +  
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNL 184

Query: 273 ASSNSFYGSVPQSFSSLESIHRLVLSYNQLT 303
           + +N+        F        L +S  ++ 
Sbjct: 185 SDNNNLEELPNDVFHGASGPVILDISRTRIH 215

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 59.7 bits (143), Expect = 1e-09
 Identities = 26/146 (17%), Positives = 36/146 (24%), Gaps = 10/146 (6%)

Query: 383 PPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPP 442
           PP          TP+P   P  R P  A         P   P      P        P  
Sbjct: 17  PPRIAPPKLACRTPSPA-RPALRAPASATSGSRKRARPPAAPGRDQARP--------PAR 67

Query: 443 RNWRVRSHTPPQPWRPSAPA-PEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKY 501
           R  R+       P  P AP  P    P     +  P++ Q     S   Q      +   
Sbjct: 68  RRLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCL 127

Query: 502 PPPVQSPPPPTPVQSPPPPVHSPPPP 527
               +       +++          P
Sbjct: 128 QRARELGARVRALKASAQDAGESCTP 153

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 57.8 bits (138), Expect = 4e-09
 Identities = 18/147 (12%), Positives = 29/147 (19%), Gaps = 1/147 (0%)

Query: 382 SPPSAPSTPPKPSTPTP-TPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNP 440
           +PP      P P+ P    PA            P+ P     +P       L      +P
Sbjct: 21  APPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVSSP 80

Query: 441 PPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVK 500
                      P    +     P   +P          ++          +         
Sbjct: 81  STPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRAL 140

Query: 501 YPPPVQSPPPPTPVQSPPPPVHSPPPP 527
                 +    TP     P        
Sbjct: 141 KASAQDAGESCTPEAEGRPEEPCGEKA 167

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 57.4 bits (137), Expect = 5e-09
 Identities = 21/145 (14%), Positives = 36/145 (24%), Gaps = 1/145 (0%)

Query: 383 PPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPP 442
                 +P +P+   P  A         PP         P     +   +  V+SP+ P 
Sbjct: 25  LACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVSSPSTPE 84

Query: 443 RNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYP 502
                   +P Q  + S PA      L    Q   +  +         +      ++K  
Sbjct: 85  APDIPACPSPGQKIKKSTPAAGQPPHLTSA-QDQDTISELASCLQRARELGARVRALKAS 143

Query: 503 PPVQSPPPPTPVQSPPPPVHSPPPP 527
                       +  P        P
Sbjct: 144 AQDAGESCTPEAEGRPEEPCGEKAP 168

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 53.2 bits (126), Expect = 1e-07
 Identities = 23/130 (17%), Positives = 31/130 (23%), Gaps = 7/130 (5%)

Query: 398 PTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWR 457
               P      P       P P  P    P            PP    R ++  PP   R
Sbjct: 11  ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQA-RPPARRR 69

Query: 458 PSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSP 517
                 E S P        P +      PSP  +     P+   PP + S      +   
Sbjct: 70  LRLSVDEVSSPS------TPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISEL 123

Query: 518 PPPVHSPPPP 527
              +      
Sbjct: 124 ASCLQRAREL 133

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 18/154 (11%), Positives = 34/154 (22%), Gaps = 9/154 (5%)

Query: 382 SPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPP--------PPPTPKPLTPVPTPLP 433
             P+ P+     S  + +    +    P      PP              P TP    +P
Sbjct: 30  PSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVSSPSTPEAPDIP 89

Query: 434 PVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSP 493
              SP    +     +   P     +      S+      +      +     +    + 
Sbjct: 90  ACPSPGQKIKK-STPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRALKASAQDAG 148

Query: 494 PPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
                     P +      P       +  P  P
Sbjct: 149 ESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLP 182

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 47.4 bits (111), Expect = 8e-06
 Identities = 20/133 (15%), Positives = 29/133 (21%), Gaps = 1/133 (0%)

Query: 382 SPPSAPSTPPKPSTPTPTPAPEQRTP-TPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNP 440
           + P      P           E  +P TP  P     P P  K     P    P +  + 
Sbjct: 55  AAPGRDQARPPARRRLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSA 114

Query: 441 PPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVK 500
             ++      +  Q  R         K          +      P  P  +  P      
Sbjct: 115 QDQDTISELASCLQRARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFH 174

Query: 501 YPPPVQSPPPPTP 513
                  P    P
Sbjct: 175 ALAQPGLPGLVLP 187

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 38/220 (17%), Positives = 74/220 (33%), Gaps = 38/220 (17%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           +   G  +       + +L++L    +  N+   + P  L N   I E ++S N L    
Sbjct: 46  LSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS 101

Query: 165 PNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVT 224
               L   S++ LDL         P       L  ++L+ N+ ++  P            
Sbjct: 102 AIAGL--QSIKTLDLTSTQITDVTPLAGLS-NLQVLYLDLNQITNISP------------ 146

Query: 225 FAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQ 284
                        +  + N+  + + N  +     + +  L KLT   A  N    S   
Sbjct: 147 -------------LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKI--SDIS 189

Query: 285 SFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYN 324
             +SL ++  + L  NQ++      +    N+   T +  
Sbjct: 190 PLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQ 227

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 27/221 (12%), Positives = 64/221 (28%), Gaps = 40/221 (18%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           I    +++          L  +            I  E +     +   ++ +N++    
Sbjct: 24  IAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA 79

Query: 165 PNVCLSWTSLRYLDLRYNNFEGEVPRELFKMK-LDAIFLNNNRFSSWIPETIGESTVSVV 223
           P   L  T +  L+L  N  +      +  ++ +  + L + + +   P           
Sbjct: 80  PLKNL--TKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTP----------- 124

Query: 224 TFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVP 283
                         +  + N+  + L  N +     S +  L  L      +     S  
Sbjct: 125 --------------LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQV--SDL 166

Query: 284 QSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYN 324
              ++L  +  L    N+++      +  LPN+       N
Sbjct: 167 TPLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNN 205

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 35/225 (15%), Positives = 78/225 (34%), Gaps = 15/225 (6%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           ++L+GN +       +  L  +    + S +   + P  L+    +    +  N++  + 
Sbjct: 90  LELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NI 144

Query: 165 PNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVT 224
             +    T+L+YL +         P      KL  +  ++N+ S  I        +  V 
Sbjct: 145 SPLA-GLTNLQYLSIGNAQVSDLTPLANLS-KLTTLKADDNKISD-ISPLASLPNLIEVH 201

Query: 225 FAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSV-P 283
             +N  S   P  + N  N+  + L+N  +       + +   L V +         + P
Sbjct: 202 LKNNQISDVSP--LANTSNLFIVTLTNQTITN---QPVFYNNNLVVPNVVKGPSGAPIAP 256

Query: 284 QSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQG 328
            + S   +     L++N  + +++           F  +   F G
Sbjct: 257 ATISDNGTYASPNLTWNLTS-FINNVSYTFNQSVTFKNTTVPFSG 300

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 57.4 bits (138), Expect = 2e-09
 Identities = 24/140 (17%), Positives = 34/140 (24%), Gaps = 9/140 (6%)

Query: 388 STPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRV 447
           S       P P         TPA   P     P P+P+        P+  P         
Sbjct: 21  SVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEA----- 75

Query: 448 RSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQS 507
               P    +P        KP+    + P   V+        P     P  +       +
Sbjct: 76  ----PVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAA 131

Query: 508 PPPPTPVQSPPPPVHSPPPP 527
              P    +  P   S   P
Sbjct: 132 TSKPVTSVASGPRALSRNQP 151

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 55.1 bits (132), Expect = 9e-09
 Identities = 19/131 (14%), Positives = 32/131 (24%), Gaps = 6/131 (4%)

Query: 383 PPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPP 442
            P+ P +    +     P    + P      P P P P P+P    P  +        P 
Sbjct: 30  APAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPK 89

Query: 443 RNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYP 502
                      +         +P +          +  + T   +    S P       P
Sbjct: 90  ------PKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGP 143

Query: 503 PPVQSPPPPTP 513
             +    P  P
Sbjct: 144 RALSRNQPQYP 154

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 52.8 bits (126), Expect = 6e-08
 Identities = 26/143 (18%), Positives = 35/143 (24%), Gaps = 1/143 (0%)

Query: 385 SAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRN 444
           S+       S   P  +          P P+ P   T         P   V  P  P   
Sbjct: 2   SSHHHHHHSSGLVPRGSHMSVHQVIELPAPAQPISVTM-VTPADLEPPQAVQPPPEPVVE 60

Query: 445 WRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPP 504
                   P+P + +    E  KP   P   P   VQ  P     P    P    +   P
Sbjct: 61  PEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAP 120

Query: 505 VQSPPPPTPVQSPPPPVHSPPPP 527
            +         +  P       P
Sbjct: 121 ARLTSSTATAATSKPVTSVASGP 143

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 51.3 bits (122), Expect = 2e-07
 Identities = 27/117 (23%), Positives = 36/117 (30%), Gaps = 2/117 (1%)

Query: 382 SPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPP 441
           +P            P P   PE        P    P         P P P P       P
Sbjct: 41  TPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQP 100

Query: 442 PRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPS 498
            R+ +     P  P+  +APA   S         P +SV S   P  L ++ P  P+
Sbjct: 101 KRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVAS--GPRALSRNQPQYPA 155

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 46/223 (20%), Positives = 81/223 (36%), Gaps = 16/223 (7%)

Query: 119 ELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGS--FPNVCLSWTSLRY 176
               LS+L L ++ +     I    L     ++ F +SN +L G   F +   S TSL+ 
Sbjct: 218 TNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA 277

Query: 177 LDLR------YNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNF 230
           L +       +   +  +      M +    ++  R    +      S    + F++N  
Sbjct: 278 LSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH-MLCPSKISPFLHLDFSNNLL 336

Query: 231 SGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGW---LKKLTVFDASSNSF-YGSVPQSF 286
           +  V  + G++  +  +IL  N L   L         +K L   D S NS  Y       
Sbjct: 337 TDTVFENCGHLTELETLILQMNQLKE-LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395

Query: 287 SSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGL 329
           S  +S+  L +S N LT  +   +   P I       N  + +
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSI 436

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 34/206 (16%), Positives = 74/206 (35%), Gaps = 12/206 (5%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           + L G      F      L  L++  V S+ F          +  +   + + +      
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT-RMV 315

Query: 165 PNVCLSW-TSLRYLDLRYNNFEGEVPRELFKM-KLDAIFLNNNRFSSWIPETIGE----S 218
             +C S  +   +LD   N     V      + +L+ + L  N+    + +         
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE-LSKIAEMTTQMK 374

Query: 219 TVSVVTFAHNNFSGCVPRSI-GNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNS 277
           ++  +  + N+ S    +       ++  + +S+N L   +   +    ++ V D  SN 
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNK 432

Query: 278 FYGSVPQSFSSLESIHRLVLSYNQLT 303
              S+P+    LE++  L ++ NQL 
Sbjct: 433 I-KSIPKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 30/267 (11%), Positives = 71/267 (26%), Gaps = 34/267 (12%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALF-HVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGS 163
           + L+   +       +  L+   +   +         PE L ++       +        
Sbjct: 120 LGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE---SLHIVFPTNK 176

Query: 164 FPNVCLSWTSLRYLDLRYNNFEGEVPRELF-----------------KMKLDAIFLNNNR 206
             +  L  +     +L  +N +  +                       + L+ I    N 
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236

Query: 207 FSSWIPETIGESTVSVVTFAHNNFSG-----CVPRSIGNMPNVNEIILSNNDLMGCLPSE 261
           F   I + +  +TV   + ++    G         S  ++  ++   + ++         
Sbjct: 237 FIR-ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295

Query: 262 IGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTF 321
                 + + + + +          S +     L  S N LT  V E    L  +     
Sbjct: 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355

Query: 322 SYNYFQGLGNECIPGSKEGGVFDDTSN 348
             N  + L       SK   +     +
Sbjct: 356 QMNQLKEL-------SKIAEMTTQMKS 375

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.6 bits (113), Expect = 8e-06
 Identities = 40/242 (16%), Positives = 83/242 (34%), Gaps = 20/242 (8%)

Query: 106 DLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFP 165
           +++ N I+  + +++  LS L +  ++ NR   +        + +   D+S+N+L     
Sbjct: 27  NISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL-VKIS 85

Query: 166 NVCLSWTSLRYLDLRYNNFEGEVPRELFKM--KLDAIFLNNNRFSSWIPETIGESTVSVV 223
             C    +L++LDL +N F+     + F    +L  + L+           I    +S V
Sbjct: 86  --CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV 143

Query: 224 TFAHNNFSGCVPRSIGNMPNVNEIIL-----SNNDLMGCLPSEIGWLKKLTVFDASSNSF 278
                            + + N   L     +N +    L   +  +  L + +      
Sbjct: 144 LLVLGETY-GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLE 202

Query: 279 YGSVPQSFSSLESIHR------LVLSYNQLTGYVSEQICKLP---NINNFTFSYNYFQGL 329
                   S L  +        L L+  + T     +I +L     +  F+ S    QG 
Sbjct: 203 DNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ 262

Query: 330 GN 331
            +
Sbjct: 263 LD 264

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 26/159 (16%), Positives = 46/159 (28%), Gaps = 32/159 (20%)

Query: 172 TSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNN 229
                L++  N    E+         KL  + +++NR    +             F  N 
Sbjct: 21  QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQY-LDI---------SVFKFN- 68

Query: 230 FSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQS--FS 287
                         +  + LS+N L+  +         L   D S N+F  ++P    F 
Sbjct: 69  ------------QELEYLDLSHNKLVK-ISC--HPTVNLKHLDLSFNAF-DALPICKEFG 112

Query: 288 SLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYF 326
           ++  +  L LS   L       I  L            +
Sbjct: 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY 151

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 31/206 (15%), Positives = 67/206 (32%), Gaps = 10/206 (4%)

Query: 154 DVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWI 211
           ++S N +   + +  LS + LR L + +N  +  +   +FK   +L+ + L++N+    I
Sbjct: 27  NISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVK-I 84

Query: 212 PETIGESTVSVVTFAHNNFSGCVPRS--IGNMPNVNEIILSNNDLMGCLPSEIGWLKKLT 269
                   +  +  + N F   +P     GNM  +  + LS   L       I  L    
Sbjct: 85  SCH-PTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISK 142

Query: 270 VFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGL 329
           V      ++     +    L+  +   L     T      I  +          +  + +
Sbjct: 143 VLLVLGETY--GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200

Query: 330 GNECIPGSKEGGVFDDTSNCLAQRPS 355
             +         +    +N      +
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKLSNLT 226

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 13/115 (11%)

Query: 234 VPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIH 293
           VP+ +        + +S N +     S+I  L KL +   S N         F   + + 
Sbjct: 15  VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72

Query: 294 RLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSN 348
            L LS+N+L            N+ +   S+N F       +P       F + S 
Sbjct: 73  YLDLSHNKLV---KISCHPTVNLKHLDLSFNAFD-----ALP---ICKEFGNMSQ 116

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 3e-09
 Identities = 57/367 (15%), Positives = 114/367 (31%), Gaps = 98/367 (26%)

Query: 5   GC--LVLFSLICSSFS-----SF-----SFALSDAEAAFLVRRQLLTLPQDGKL------ 46
           G     +   +C S+       F     +    ++    L   Q L    D         
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 47  ----PDNIENEKHMLLSKHSRRPYIRTRLTRQGNWVGTDVCS-----YYGVFC---APAP 94
                  I + +  L      +PY    L      V  +V +      + + C       
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLL------VLLNVQNAKAWNAFNLSCKILLTTR 273

Query: 95  DNSNITVVAG-----IDLNGNDIAGYFPAE-----LGWL----SDLALFHVNSNRF-CGI 139
                  ++      I L+ +      P E     L +L     DL    + +N     I
Sbjct: 274 FKQVTDFLSAATTTHISLDHHS-MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332

Query: 140 IPESLSNWKLIYEF--DVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKL 197
           I ES+ +    ++    V+ ++L                ++   N  E    R++F   L
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKL-------------TTIIESSLNVLEPAEYRKMFDR-L 378

Query: 198 DAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC 257
            ++F  +    + IP       +S++     +        +     VN+  L    L+  
Sbjct: 379 -SVFPPS----AHIPT----ILLSLI---WFDVIKSDVMVV-----VNK--LHKYSLV-- 417

Query: 258 LPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHR-LVLSYNQLTGYVSEQICKLPNI 316
                   K+ T+   S  S Y  +     +  ++HR +V  YN    + S+ +   P +
Sbjct: 418 ----EKQPKESTI---SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP-PYL 469

Query: 317 NNFTFSY 323
           + + +S+
Sbjct: 470 DQYFYSH 476

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 42/228 (18%), Positives = 79/228 (34%), Gaps = 15/228 (6%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLV--- 161
           ++L  N+I          L  L +  +  N    I   + +    +   ++ +N L    
Sbjct: 80  LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139

Query: 162 -GSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM--KLDAIFLNNNRFSSWIPETIGES 218
            G+F  +    + LR L LR N  E  +P   F     L  + L   +   +I E   E 
Sbjct: 140 SGAFEYL----SKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 219 TVSVVT--FAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSN 276
             ++        N    +P ++  +  + E+ +S N      P     L  L      ++
Sbjct: 195 LFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252

Query: 277 SFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYN 324
                   +F  L S+  L L++N L+    +    L  +      +N
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 29/186 (15%), Positives = 55/186 (29%), Gaps = 57/186 (30%)

Query: 124 SDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRL----VGSFPNVCLSWTSLRYLDL 179
           S+    ++  N    I  ++  +   +    +  N +    VG+F  +     SL  L+L
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGL----ASLNTLEL 130

Query: 180 RYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRS 237
             N     +P   F+   KL  ++L NN   S IP                 F+      
Sbjct: 131 FDNWLT-VIPSGAFEYLSKLRELWLRNNPIES-IPSYA--------------FNRV---- 170

Query: 238 IGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVL 297
               P++  + L     +  +                          +F  L ++  L L
Sbjct: 171 ----PSLMRLDLGELKKLEYIS-----------------------EGAFEGLFNLKYLNL 203

Query: 298 SYNQLT 303
               + 
Sbjct: 204 GMCNIK 209

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 58.0 bits (140), Expect = 4e-09
 Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 23/131 (17%)

Query: 384 PSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPR 443
           P+AP++P  P     T A      TPAPP     P   PKP                   
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKP------------- 48

Query: 444 NWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPS--VKY 501
               ++ TPP+P   +A            ++     +++    +     PPP  +  V++
Sbjct: 49  ----KNPTPPRPAGDNATVAAGH----ATLREHLRDIKAENTDANFYVCPPPTGATVVQF 100

Query: 502 PPPVQSPPPPT 512
             P + P  P 
Sbjct: 101 EQPRRCPTRPE 111

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 14/85 (16%), Positives = 21/85 (24%), Gaps = 1/85 (1%)

Query: 379 GGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSP 438
             G   +  +    P+TP P       T  P P     P  PTP P              
Sbjct: 10  TPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTP-PRPAGDNATVAAGHA 68

Query: 439 NPPPRNWRVRSHTPPQPWRPSAPAP 463
                   +++      +    P  
Sbjct: 69  TLREHLRDIKAENTDANFYVCPPPT 93

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 44.9 bits (106), Expect = 6e-05
 Identities = 21/123 (17%), Positives = 26/123 (21%), Gaps = 20/123 (16%)

Query: 411 PPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLL 470
           P  P+ P  P     T      P               +  PP         P+P K   
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPA--------------TPAPPALGAAPTGDPKPKKNKK 47

Query: 471 PPVQYPPSSVQSTPPPSPLPQSPPPPPSV------KYPPPVQSPPPPTPVQSPPPPVHSP 524
           P    PP         +    +                  V  PP    V     P   P
Sbjct: 48  PKNPTPPRPAGDNATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCP 107

Query: 525 PPP 527
             P
Sbjct: 108 TRP 110

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 464 EPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHS 523
           +P+ P  P     P    +T   +  P +P PP     P     P      ++P PP  +
Sbjct: 1   DPAAPTSPG---TPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPA 57

Query: 524 PPPP 527
               
Sbjct: 58  GDNA 61

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.8 bits (139), Expect = 5e-09
 Identities = 41/300 (13%), Positives = 93/300 (31%), Gaps = 10/300 (3%)

Query: 28  EAAFLVRRQLLTL--PQDGKLPDNIENEKHMLLSKHSRRPYIRTRLTRQGNWVGTDVCSY 85
           ++A+   R LL    P D     ++  E+  L    SR   + +R+      V     S 
Sbjct: 226 QSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSV 285

Query: 86  YGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVN-SNRFCGIIPESL 144
                      S++ +      + ND        + W    +                  
Sbjct: 286 EWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDS 345

Query: 145 SNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNN 204
           +  + ++  ++S  +      +   S   L+ L+         +   +  +         
Sbjct: 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET 404

Query: 205 NRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGW 264
            ++ S + + +     + +    + F            +V  + L++ DL   +   +  
Sbjct: 405 LQYFSTL-KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQ 461

Query: 265 LKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYN 324
           L  +T  D S N    ++P + ++L  +  L  S N L     + +  LP +       N
Sbjct: 462 LLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNN 518

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.1 bits (137), Expect = 8e-09
 Identities = 34/210 (16%), Positives = 71/210 (33%), Gaps = 8/210 (3%)

Query: 116 FPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLR 175
           +  +      L    ++  +   ++   L + K + E +  N   + +   +  +   L 
Sbjct: 341 WCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLL 399

Query: 176 YLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVP 235
           Y       F   +             L +          +  + V V+  AH + +  V 
Sbjct: 400 YEKETLQYFS-TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VL 456

Query: 236 RSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRL 295
             +  +  V  + LS+N L   LP  +  L+ L V  AS N+         ++L  +  L
Sbjct: 457 CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL--ENVDGVANLPRLQEL 513

Query: 296 VLSYNQLTGYVS-EQICKLPNINNFTFSYN 324
           +L  N+L    + + +   P +       N
Sbjct: 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 56.6 bits (136), Expect = 9e-09
 Identities = 27/139 (19%), Positives = 43/139 (30%), Gaps = 12/139 (8%)

Query: 382 SPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPP 441
                 ST    S  +PT       P+  P        P     +P+ T   P+N   PP
Sbjct: 11  DDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLH-SPISTLSSPINGMGPP 69

Query: 442 PRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKY 501
                    +P  P   S P         P + +   S Q + P +P+  S    P +  
Sbjct: 70  FSVI----SSPMGPHSMSVPTT-------PTLGFSTGSPQLSSPMNPVSSSEDIKPPLGL 118

Query: 502 PPPVQSPPPPTPVQSPPPP 520
              ++ P  P+   +    
Sbjct: 119 NGVLKVPAHPSGNMASFTK 137

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 52.0 bits (124), Expect = 3e-07
 Identities = 21/144 (14%), Positives = 29/144 (20%), Gaps = 11/144 (7%)

Query: 384 PSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPR 443
                        +        +PT      +P   P+  P    P  L    S    P 
Sbjct: 4   HHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSP- 62

Query: 444 NWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPP 503
              +    PP     S   P         +  P +        SP   SP  P S     
Sbjct: 63  ---INGMGPPFSVISSPMGP-------HSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDI 112

Query: 504 PVQSPPPPTPVQSPPPPVHSPPPP 527
                          P  +     
Sbjct: 113 KPPLGLNGVLKVPAHPSGNMASFT 136

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 48.6 bits (115), Expect = 4e-06
 Identities = 18/119 (15%), Positives = 29/119 (24%), Gaps = 1/119 (0%)

Query: 379 GGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSP 438
              + P+   +   PS   P+  P   +P       S    P      P      P+   
Sbjct: 22  SSLTSPTGRGSMAAPS-LHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPH 80

Query: 439 NPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPP 497
           +           +   P   S   P  S   + P       ++    PS    S     
Sbjct: 81  SMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHI 139

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 41/207 (19%), Positives = 75/207 (36%), Gaps = 17/207 (8%)

Query: 132 NSNRFCGIIPESLSNWKLIYEFDVSNNRL----VGSFPNVCLSWTSLRYLDLRYNNFEGE 187
           + N+   I   S  + + +    +S N +    +G+F  +     +L  L+L  N     
Sbjct: 72  HENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL----ANLNTLELFDNRLT-T 126

Query: 188 VPRELFKM--KLDAIFLNNNRFSSWIPETIGESTVSVVT--FAHNNFSGCVPRSI-GNMP 242
           +P   F    KL  ++L NN   S IP        S+             +       + 
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185

Query: 243 NVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQL 302
           N+  + L+  +L   +P+ +  L KL   D S N      P SF  L  + +L +  +Q+
Sbjct: 186 NLRYLNLAMCNLRE-IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243

Query: 303 TGYVSEQICKLPNINNFTFSYNYFQGL 329
                     L ++     ++N    L
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLTLL 270

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.4 bits (105), Expect = 6e-05
 Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 9/170 (5%)

Query: 172 TSLRYLDLRYNNFEGEVPRELFKM--KLDAIFLNNNRFSSWIPET-IGESTVSVVTFAHN 228
           T+ R L+L  N  +  +    FK    L+ + L+ N   +       G + ++ +    N
Sbjct: 64  TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 229 NFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEI-GWLKKLTVFDASSNSFYGSVP-QSF 286
             +     +   +  + E+ L NN +   +PS     +  L   D         +   +F
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 287 SSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPG 336
             L ++  L L+   L       +  L  ++    S N+   +      G
Sbjct: 182 EGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQG 229

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 23/149 (15%), Positives = 36/149 (24%), Gaps = 7/149 (4%)

Query: 383 PPSAPSTPPKPSTPTPTPAPE--QRTPTPAPPTPSPPPPP----TPKPLTPVPTPLPPVN 436
              +      PS  T + A +         P   +  PP     +P   +P+   +PP  
Sbjct: 5   EAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHG 64

Query: 437 SPNPPPRNWRVRSHTPPQP-WRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPP 495
           S           S         P   +PE          Y  SS  S P          P
Sbjct: 65  SLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEP 124

Query: 496 PPSVKYPPPVQSPPPPTPVQSPPPPVHSP 524
                    +         +S    + + 
Sbjct: 125 DEPQVQAKIMAYLQQEQANRSKHEKLSTF 153

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 50.4 bits (120), Expect = 7e-07
 Identities = 17/120 (14%), Positives = 26/120 (21%), Gaps = 2/120 (1%)

Query: 381 GSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNP 440
               ++   P   +   PT        T       PP        T    P   + S  P
Sbjct: 26  NIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYP 85

Query: 441 PPRNWRVRSHTPPQP--WRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPS 498
            P      S           ++        +L  ++  P   Q         Q      S
Sbjct: 86  DPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRS 145

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 47.3 bits (112), Expect = 6e-06
 Identities = 14/111 (12%), Positives = 26/111 (23%), Gaps = 1/111 (0%)

Query: 416 PPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAP-APEPSKPLLPPVQ 474
                  + +    T    + + +   +   +     P      +P    P    +PP  
Sbjct: 5   EAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHG 64

Query: 475 YPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPP 525
                      PS   +S  P P    P  +         Q+  P      
Sbjct: 65  SLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHL 115

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 16/109 (14%), Positives = 27/109 (24%), Gaps = 8/109 (7%)

Query: 425 LTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTP 484
           L  +   +  +  P+    +  +++        P   A  P                + P
Sbjct: 4   LEAMSQVIQAM--PSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMP 61

Query: 485 PPSPL------PQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
           P   L         P      +YP P  S P      S      +  P 
Sbjct: 62  PHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPA 110

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 40/250 (16%), Positives = 80/250 (32%), Gaps = 36/250 (14%)

Query: 106 DLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRL----V 161
           DL+ N I     ++L    +L    + SN    I  +S S+   +   D+S N L     
Sbjct: 58  DLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS 117

Query: 162 GSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETIGEST 219
             F  +    +SL +L+L  N ++      LF    KL  + + N    + I        
Sbjct: 118 SWFKPL----SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ------- 166

Query: 220 VSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFY 279
                    +F+G        +  + E+ +  +DL    P  +  ++ ++          
Sbjct: 167 -------RKDFAG--------LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211

Query: 280 GSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFS-YNYFQGLGNECIPGSK 338
             +        S+  L L    L    +    +L      +      F+ +        +
Sbjct: 212 LLLEIFVDVTSSVECLELRDTDLD---TFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268

Query: 339 EGGVFDDTSN 348
              + +  S 
Sbjct: 269 VMKLLNQISG 278

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.5 bits (121), Expect = 7e-07
 Identities = 29/183 (15%), Positives = 64/183 (34%), Gaps = 17/183 (9%)

Query: 172 TSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETIGESTVSVVTF--AH 227
            +++ LDL  N     +     +  + L A+ L +N  ++ I E    S  S+     ++
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSY 109

Query: 228 NNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEI-GWLKKLTVFDASSNSFYGSVP-QS 285
           N  S         + ++  + L  N       + +   L KL +    +   +  +  + 
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 286 FSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDD 345
           F+ L  +  L +  + L  Y  + +  + N+++          L              D 
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL---------LEIFVDV 220

Query: 346 TSN 348
           TS+
Sbjct: 221 TSS 223

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 36/211 (17%), Positives = 70/211 (33%), Gaps = 22/211 (10%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           + +        F      L  L + HV +  F        S +  +    +S +      
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT-PFI 344

Query: 165 PNVCLSW-TSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETIGESTVS 221
             VC    +S  +L+   N F  +   +      +L  + L  N   +   +    +   
Sbjct: 345 HMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNM 402

Query: 222 VVTFAHNNFSGCVPRSI-----GNMPNVNEIILSNNDLMG----CLPSEIGWLKKLTVFD 272
                 +     +             ++  + LS+N L G    CLP       K+ V D
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP------KVKVLD 456

Query: 273 ASSNSFYGSVPQSFSSLESIHRLVLSYNQLT 303
             +N    S+P+  + L+++  L ++ NQL 
Sbjct: 457 LHNNRI-MSIPKDVTHLQALQELNVASNQLK 486

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.6 bits (113), Expect = 7e-06
 Identities = 39/220 (17%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 123 LSDLALFHVNSNRFCGI-IPESLSNWKLIYEFDVSNNRLVG-----SFPNVCLSWTSLRY 176
           L ++ L H+ +   C + + +      + Y  ++ N  +        F     +  SL  
Sbjct: 251 LLNVTLQHIETTWKCSVKLFQFFWPRPVEY-LNIYNLTITERIDREEFTYSETALKSLMI 309

Query: 177 LDLRYNNF---EGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGC 233
             ++   F   +  +     +M +  + +++  F   +      S+ + + F  N F+  
Sbjct: 310 EHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS-PSSFTFLNFTQNVFTDS 368

Query: 234 VPRSIGNMPNVNEIILSNNDLMGCLPSEIGW---LKKLTVFDASSNSF-YGSVPQSFSSL 289
           V +    +  +  +IL  N L             +  L   D S NS    +  ++ +  
Sbjct: 369 VFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427

Query: 290 ESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGL 329
           ESI  L LS N LTG V   +   P +       N    +
Sbjct: 428 ESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIMSI 465

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.6 bits (113), Expect = 7e-06
 Identities = 27/242 (11%), Positives = 62/242 (25%), Gaps = 17/242 (7%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALF-HVNSNRFCGIIPESLSNWKLIY-EFDVSNNRLVG 162
           + L+           +  L    +   + S    G   ESL              N L  
Sbjct: 151 LGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFS 210

Query: 163 SFPNVCLSW-TSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFS----SW-----IP 212
              N+ ++    L+  +++ N+   +              L N        +W     + 
Sbjct: 211 VQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF 270

Query: 213 ETIGESTVSVVTFAHNNFSGCVPRSIGN-----MPNVNEIILSNNDLMGCLPSEIGWLKK 267
           +      V  +   +   +  + R         + ++    + N   +    +      +
Sbjct: 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330

Query: 268 LTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQ 327
           + +   S +           S  S   L  + N  T  V +    L  +       N  +
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

Query: 328 GL 329
             
Sbjct: 391 NF 392

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.5 bits (105), Expect = 8e-05
 Identities = 33/178 (18%), Positives = 58/178 (32%), Gaps = 30/178 (16%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGI--IPESLSNWKLIYEFDVSNNRL-V 161
           ++   N            L  L    +  N       +     N   +   DVS N L  
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417

Query: 162 GSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVS 221
            ++   C    S+  L+L  N   G V R L   K+  + L+NNR  S            
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP-KVKVLDLHNNRIMS------------ 464

Query: 222 VVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEI-GWLKKLTVFDASSNSF 278
                       +P+ + ++  + E+ +++N L   +P  +   L  L       N +
Sbjct: 465 ------------IPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPW 509

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 42/260 (16%), Positives = 70/260 (26%), Gaps = 55/260 (21%)

Query: 83  CSYYGVFCAPAPDNSNITVVAGI-------DLNGNDIAGYFPAELGWLSDLALFHVNSNR 135
              Y   C     N  +  V  +       DL+ N IA         L DL    V    
Sbjct: 10  VIGYNAIC----INRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQT 65

Query: 136 FCGIIPE----SLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNF-EGEVPR 190
              +I       LS+   +    +  N+ +           +L  L L   N     +  
Sbjct: 66  PGLVIRNNTFRGLSS---LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG 122

Query: 191 ELFK--MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEII 248
             FK    L+ + L +N      P +               F         NM   + + 
Sbjct: 123 NFFKPLTSLEMLVLRDNNIKKIQPASF--------------FL--------NMRRFHVLD 160

Query: 249 LSNNDLMGCLPSEI-----------GWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVL 297
           L+ N +   +  E              L  +T+ D +          +     SI  L L
Sbjct: 161 LTFNKV-KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDL 219

Query: 298 SYNQLTGYVSEQICKLPNIN 317
           S N     ++++        
Sbjct: 220 SGNGFKESMAKRFFDAIAGT 239

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.5 bits (121), Expect = 8e-07
 Identities = 36/235 (15%), Positives = 64/235 (27%), Gaps = 44/235 (18%)

Query: 106 DLNGNDI------AGYFPAELGWLSDLALFHVNSNRFCGIIPESL-SNWKLIYEFDVSNN 158
            L   ++        +F      L+ L +  +  N    I P S   N +  +  D++ N
Sbjct: 109 TLTQCNLDGAVLSGNFFKP----LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164

Query: 159 RL----VGSFPNVCLSWTSLRYLDLRYN-------NFEGEVPRELFK--MKLDAIFLNNN 205
           ++         N          L L           + G            +  + L+ N
Sbjct: 165 KVKSICEEDLLN--FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222

Query: 206 RFSSWIPETI--------------GESTVSVVTFAHNNFSGCVPRSIGNMP--NVNEIIL 249
            F   + +                  S     +F H NF      +   +    V    L
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL 282

Query: 250 SNNDLMGCLPSEI-GWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLT 303
           S + +   L   +      L     + N        +F  L  + +L LS N L 
Sbjct: 283 SKSKIFA-LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.0 bits (104), Expect = 8e-05
 Identities = 19/188 (10%), Positives = 56/188 (29%), Gaps = 14/188 (7%)

Query: 154 DVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM--KLDAIFLNNNRFSSWI 211
           D+S N +             L++L +        +    F+    L  + L+ N+F   +
Sbjct: 36  DLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ-L 94

Query: 212 PETIGESTVSVVTF--AHNNF-SGCVPRSI-GNMPNVNEIILSNNDLMGCLPSEI-GWLK 266
                    ++        N     +  +    + ++  ++L +N++    P+     ++
Sbjct: 95  ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154

Query: 267 KLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYF 326
           +  V D + N       +   + +  H  +L  + +       +  +             
Sbjct: 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI------TLQDMNEYWLGWEKCGNP 208

Query: 327 QGLGNECI 334
               +   
Sbjct: 209 FKNTSITT 216

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.9 bits (96), Expect = 9e-04
 Identities = 47/272 (17%), Positives = 83/272 (30%), Gaps = 48/272 (17%)

Query: 7   LVLFSLICSSFSSFSFALSDAEAAF-LVRRQLLTLP-------QDGKLPDNIENEKHMLL 58
           L L S+     + +          F       L L           +  D I   K  + 
Sbjct: 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK--IQ 242

Query: 59  SKHSRRPYIRTRLTRQGNWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPA 118
           S      Y         N+   D  ++ G+      + S +      DL+ + I     +
Sbjct: 243 SLILSNSYNMGSSFGHTNFKDPDNFTFKGL------EASGVKTC---DLSKSKIFALLKS 293

Query: 119 ELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSW-TSLRYL 177
                +DL    +  N    I   +      + + ++S N L GS  +        L  L
Sbjct: 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVL 352

Query: 178 DLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVP 235
           DL YN+    +  + F     L  + L+ N+  S +P+ I              F     
Sbjct: 353 DLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKS-VPDGI--------------FD---- 392

Query: 236 RSIGNMPNVNEIILSNNDLMGCLPSEIGWLKK 267
                + ++ +I L  N    C    I +L +
Sbjct: 393 ----RLTSLQKIWLHTNPWD-CSCPRIDYLSR 419

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 43/224 (19%), Positives = 76/224 (33%), Gaps = 29/224 (12%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           I L+GN I+    A      +L +  ++SN    I   + +   L+ + D+S+N  + S 
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96

Query: 165 PNVCLSW-TSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETIGESTVS 221
                     L  L L     + E+   LF+    L  ++L +N   + +P+        
Sbjct: 97  DPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQA-LPDDT------ 148

Query: 222 VVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEI-GWLKKLTVFDASSNSFYG 280
                   F            N+  + L  N +   +P      L  L       N    
Sbjct: 149 --------FRDL--------GNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAH 191

Query: 281 SVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYN 324
             P +F  L  +  L L  N L+   +E +  L  +     + N
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 32/187 (17%), Positives = 57/187 (30%), Gaps = 35/187 (18%)

Query: 124 SDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRL----VGSFPNVCLSWTSLRYLDL 179
           +      ++ NR   +   S    + +    + +N L      +F  +      L  LDL
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL----ALLEQLDL 87

Query: 180 RYNNFEGEVPRELFKM--KLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRS 237
             N     V    F    +L  + L+       +                       P  
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LG----------------------PGL 124

Query: 238 IGNMPNVNEIILSNNDLMGCLPSEI-GWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLV 296
              +  +  + L +N L   LP +    L  LT      N       ++F  L S+ RL+
Sbjct: 125 FRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183

Query: 297 LSYNQLT 303
           L  N++ 
Sbjct: 184 LHQNRVA 190

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 27/172 (15%), Positives = 52/172 (30%), Gaps = 39/172 (22%)

Query: 140 IPESLSNWKLIYEFDVSNNRL----VGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK- 194
           +P  +          +  NR+      SF        +L  L L  N     +    F  
Sbjct: 26  VPVGIPAA--SQRIFLHGNRISHVPAASFRAC----RNLTILWLHSNVLA-RIDAAAFTG 78

Query: 195 -MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNND 253
              L+ + L++N     +            TF               +  ++ + L    
Sbjct: 79  LALLEQLDLSDNAQLRSVDPA---------TFHG-------------LGRLHTLHLDRCG 116

Query: 254 LMGCLPSEI-GWLKKLTVFDASSNSFYGSVP-QSFSSLESIHRLVLSYNQLT 303
           L   L   +   L  L       N+   ++P  +F  L ++  L L  N+++
Sbjct: 117 LQ-ELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRIS 166

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 53.0 bits (125), Expect = 2e-07
 Identities = 35/175 (20%), Positives = 47/175 (26%), Gaps = 20/175 (11%)

Query: 334 IPGS-----KEGGVFDDTSNCLAQRPSQKWATTCSPVVSNPVDCSKDVCLGGGSPPSAPS 388
           I GS            DT N        +W    +    +  D S       G+     S
Sbjct: 333 ISGSSIGEKNGMIYATDTLNFKQGEGGSRWTMYKNSQAGSGWDSSDAPNSWYGAGAIKMS 392

Query: 389 TPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTP--VPTPLPPVNSPNPPPRNWR 446
            P    T   T A      +  P  P        KP     +   +  VN P        
Sbjct: 393 GPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEK-- 450

Query: 447 VRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKY 501
                P +P  P+ P  E  KPL       P+ V       P   +PP      +
Sbjct: 451 --PTPPVKPTAPTKPTYETEKPL------KPAPVAPNYEKEP---TPPTRLEHHH 494

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 43.7 bits (101), Expect = 1e-04
 Identities = 18/91 (19%), Positives = 26/91 (28%), Gaps = 1/91 (1%)

Query: 435 VNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPP 494
           V        N    S  P  P + +    +P+       +    +V       P P   P
Sbjct: 398 VTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKP 457

Query: 495 PPPSVKYPPPVQSPPPPTPVQSPPPPVHSPP 525
             P  K     + P  P PV        +PP
Sbjct: 458 TAP-TKPTYETEKPLKPAPVAPNYEKEPTPP 487

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 41.4 bits (95), Expect = 5e-04
 Identities = 14/84 (16%), Positives = 22/84 (26%), Gaps = 2/84 (2%)

Query: 444 NWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPP 503
                ++  P    P  P  + +    P + Y  +          + +  P PP    P 
Sbjct: 401 GATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVK--PT 458

Query: 504 PVQSPPPPTPVQSPPPPVHSPPPP 527
               P   T     P PV      
Sbjct: 459 APTKPTYETEKPLKPAPVAPNYEK 482

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 43/261 (16%), Positives = 89/261 (34%), Gaps = 22/261 (8%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           I  N +DI       + +L ++    +N N+   I  + L+N K +    +  N++    
Sbjct: 48  IIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIK-DL 102

Query: 165 PNVCLSWTSLRYLDLRYNN---FEGEVPRELFKM-KLDAIFLNNNRFSSWIPETIGEST- 219
            ++      L+ L L +N      G     L  + +L++++L NN+ +      +   T 
Sbjct: 103 SSLK-DLKKLKSLSLEHNGISDING-----LVHLPQLESLYLGNNKITD--ITVLSRLTK 154

Query: 220 VSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFY 279
           +  ++   N  S  VP  +  +  +  + LS N +       +  LK L V +  S    
Sbjct: 155 LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210

Query: 280 GSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKE 339
                  S+L   + +  +   L               N  +    F    +        
Sbjct: 211 NKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVT 270

Query: 340 GGVFDDTSNCLAQRPSQKWAT 360
            G      +    +P ++  T
Sbjct: 271 IGKAKARFHGRVTQPLKEVYT 291

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 25/186 (13%), Positives = 59/186 (31%), Gaps = 18/186 (9%)

Query: 142 ESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIF 201
                +    + ++    +  +     L   S+  +    ++ +     +     +  +F
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVTQNEL--NSIDQIIANNSDIKSVQGIQYLP-NVTKLF 71

Query: 202 LNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSE 261
           LN N+ +  I        +  +    N         + ++  +  + L +N +     S+
Sbjct: 72  LNGNKLTD-IKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGI-----SD 123

Query: 262 I---GWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINN 318
           I     L +L      +N    +     S L  +  L L  NQ++      +  L  + N
Sbjct: 124 INGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQN 179

Query: 319 FTFSYN 324
              S N
Sbjct: 180 LYLSKN 185

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 16/128 (12%), Positives = 47/128 (36%), Gaps = 9/128 (7%)

Query: 197 LDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMG 256
           +      +       P+    +          + +  V      + ++++II +N+D+  
Sbjct: 1   MGETITVSTPIKQIFPDD-AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS 57

Query: 257 CLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNI 316
                I +L  +T    + N    +  +  ++L+++  L L  N++       +  L  +
Sbjct: 58  V--QGIQYLPNVTKLFLNGNKL--TDIKPLTNLKNLGWLFLDENKIKDL--SSLKDLKKL 111

Query: 317 NNFTFSYN 324
            + +  +N
Sbjct: 112 KSLSLEHN 119

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 25/186 (13%), Positives = 60/186 (32%), Gaps = 18/186 (9%)

Query: 142 ESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIF 201
            S   +    + ++    +  +     L   S+  +    ++ +     +     +  +F
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQNEL--NSIDQIIANNSDIKSVQGIQYLP-NVTKLF 74

Query: 202 LNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNN---DLMGCL 258
           LN N+ +  I        +  +    N         + ++  +  + L +N   D+    
Sbjct: 75  LNGNKLTD-IKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDI---- 127

Query: 259 PSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINN 318
            + +  L +L      +N    +     S L  +  L L  NQ++      +  L  + N
Sbjct: 128 -NGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQN 182

Query: 319 FTFSYN 324
              S N
Sbjct: 183 LYLSKN 188

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 41/233 (17%), Positives = 84/233 (36%), Gaps = 26/233 (11%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRL--VG 162
           I  N +DI       + +L ++    +N N+   I  + L+N K +    +  N++  + 
Sbjct: 51  IIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDLS 106

Query: 163 SFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGEST-VS 221
           S  ++      L+ L L +N             +L++++L NN+ +      +   T + 
Sbjct: 107 SLKDL----KKLKSLSLEHNGISDINGLVHLP-QLESLYLGNNKITD--ITVLSRLTKLD 159

Query: 222 VVTFAHNNFSGCVPRSIGNMPNVNEIILSNN---DLMGCLPSEIGWLKKLTVFDASSNSF 278
            ++   N  S  VP  +  +  +  + LS N   DL       +  LK L V +  S   
Sbjct: 160 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-----RALAGLKNLDVLELFSQEC 212

Query: 279 YGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGN 331
                   S+L   + +  +   L     E I    +       ++  +    
Sbjct: 213 LNKPINHQSNLVVPNTVKNTDGSLVTP--EIISDDGDYEKPNVKWHLPEFTNE 263

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 42/272 (15%), Positives = 77/272 (28%), Gaps = 50/272 (18%)

Query: 97  SNITVVAGIDLNGNDI----AGYFPAELGWLSDLALFHVNSNRF----CGIIPESLSNWK 148
           +  ++  G  L  + I         A L     +    ++ N         + E++++ K
Sbjct: 2   ARFSI-EGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60

Query: 149 LIYEFDVSNN---RLVGSFPNVC------LSW-TSLRYLDLRYNNFEGEVPRELFKM--- 195
            +   + S+    R+    P         L     L  + L  N F       L      
Sbjct: 61  DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120

Query: 196 --KLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNND 253
              L+ ++L+NN         +G    +    A       V +   N P +  II   N 
Sbjct: 121 HTPLEHLYLHNNG--------LGPQ--AGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170

Query: 254 L----MGCLPSEIGWLKKLTVFDASSNSFY--GSVP---QSFSSLESIHRLVLSYNQLT- 303
           L    M          + L       N     G      +  +  + +  L L  N  T 
Sbjct: 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH 230

Query: 304 -G--YVSEQICKLPNINNFTFSYNYFQGLGNE 332
            G   ++  +   PN+     +      L   
Sbjct: 231 LGSSALAIALKSWPNLRELGLNDC---LLSAR 259

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 34/139 (24%)

Query: 96  NSNITVVAGIDLNGNDI----AGYFPAE-LGWLSDLALFHVNSNRF----CGIIPESLSN 146
           +  +     + +  N I      +   E L +  +L +  +  N F       +  +L +
Sbjct: 186 HRLLHT---VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242

Query: 147 WKLIYEFDVSNNRL-----------VGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM 195
           W  + E  +++  L                N       L+ L L+YN  E +  R L  +
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLEN-----IGLQTLRLQYNEIELDAVRTLKTV 297

Query: 196 ------KLDAIFLNNNRFS 208
                  L  + LN NRFS
Sbjct: 298 IDEKMPDLLFLELNGNRFS 316

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 48.7 bits (115), Expect = 3e-06
 Identities = 15/112 (13%), Positives = 18/112 (16%), Gaps = 6/112 (5%)

Query: 396 PTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQP 455
           P       QR   P PP  +  P  TP                  P       S      
Sbjct: 19  PNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFF 78

Query: 456 WRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQS------PPPPPSVKY 501
              S    + +                                 P     KY
Sbjct: 79  SSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWAKY 130

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 14/115 (12%), Positives = 22/115 (19%), Gaps = 1/115 (0%)

Query: 378 LGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNS 437
                P    +   +P  P P P+      TP     S     T  P+     P P  + 
Sbjct: 14  FMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSG 73

Query: 438 PNPPPRNWR-VRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQ 491
                 +       T        +                   +     P     
Sbjct: 74  GGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWA 128

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 16/109 (14%), Positives = 23/109 (21%), Gaps = 5/109 (4%)

Query: 394 STPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPP 453
            +      P         P P PPPP    P    P                     +P 
Sbjct: 11  DSNFMANLPNGYMTDLQRPQPPPPPPSAASP-GATPGSAAASAERASTAA----PVASPA 65

Query: 454 QPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYP 502
            P   S+        L   V+   ++  +T        S          
Sbjct: 66  APSPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 12/56 (21%), Positives = 15/56 (26%)

Query: 472 PVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
           P  Y     +  PPP P   + P           +      PV SP  P       
Sbjct: 19  PNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGG 74

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 17/110 (15%), Positives = 24/110 (21%), Gaps = 6/110 (5%)

Query: 414 PSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPV 473
           P+       +P  P P P        P        S        P A    PS       
Sbjct: 19  PNGYMTDLQRPQPPPPPPSAASPGATPGSAA---ASAERASTAAPVASPAAPSPGSSGGG 75

Query: 474 QYPPS---SVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPP 520
            +  S   +V+ T   +    S              +      V   P  
Sbjct: 76  GFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHT 125

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 28/175 (16%), Positives = 62/175 (35%), Gaps = 19/175 (10%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
            +L    +          LS +  F+ +++    +    +  +  + E  +S+N++    
Sbjct: 24  QNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHNQIS-DL 78

Query: 165 PNVCLSWTSLRYLDLRYN---NFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVS 221
             +    T L  L +  N   N  G     +    L  +FL+NN         I    + 
Sbjct: 79  SPLK-DLTKLEELSVNRNRLKNLNG-----IPSACLSRLFLDNNELRD-TDSLIHLKNLE 131

Query: 222 VVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSN 276
           +++  +N     V   +G +  +  + L  N++       +  LKK+   D +  
Sbjct: 132 ILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEI--TNTGGLTRLKKVNWIDLTGQ 182

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 23/140 (16%), Positives = 34/140 (24%), Gaps = 4/140 (2%)

Query: 388 STPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRV 447
           +TP       P PA         P +PS      P P  P  TP   V            
Sbjct: 6   ATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLF--- 62

Query: 448 RSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQS 507
              T       + P+       +     P +  Q     +    +    P+V       +
Sbjct: 63  -EDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPAT 121

Query: 508 PPPPTPVQSPPPPVHSPPPP 527
                   S    +  PP  
Sbjct: 122 VNGTVEGGSGAGRLDLPPGF 141

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 20/118 (16%), Positives = 27/118 (22%), Gaps = 8/118 (6%)

Query: 405 RTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPE 464
           R P PAP     P     +   P+P      +          V +    Q  RP  P P 
Sbjct: 11  RRPFPAPTAMWRPRRR--RQAAPMPARNGLASQIQQLTTA--VSALVIGQATRPQNPRPR 66

Query: 465 PSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVH 522
           P           P   +   P     + P        P   Q               +
Sbjct: 67  PPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTK----PGKRQRMALKLEADRLFDVKN 120

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 16/93 (17%), Positives = 21/93 (22%), Gaps = 7/93 (7%)

Query: 439 NPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPP----VQYPPSSVQSTPPPSPLPQSPP 494
           N   R        P   WRP         P        +Q   ++V +           P
Sbjct: 7   NMLGRRPFPA---PTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNP 63

Query: 495 PPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
            P             PP P +  P       P 
Sbjct: 64  RPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPA 96

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 46.5 bits (109), Expect = 2e-05
 Identities = 29/173 (16%), Positives = 44/173 (25%), Gaps = 4/173 (2%)

Query: 359 ATTCSPVVSNPVDCSKDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPP 418
           A   +   +     +      G    + P+    P+   P    E+      PP  SPP 
Sbjct: 13  AAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEPPRASPPG 72

Query: 419 PPTPKPLTPVPTPLPPVNSPNPPPRNW----RVRSHTPPQPWRPSAPAPEPSKPLLPPVQ 474
                P +  P   P V   +  P               +  R      E  + L    +
Sbjct: 73  GLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDESLANLSE 132

Query: 475 YPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPPP 527
               S +     +   +  PPPP    P       P  P         S  P 
Sbjct: 133 DEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGVEGAAFQSRLPH 185

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 14/105 (13%), Positives = 20/105 (19%), Gaps = 4/105 (3%)

Query: 378 LGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLP-PVN 436
              G P    ST   PS  T                              + T L  P+ 
Sbjct: 333 QDTGVPRPGLSTIFSPSRSTFGVDL---LVAHTDVYLDGQVHAEKLTANEIVTALSVPLV 389

Query: 437 SPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQ 481
            P     +    +          +        L         SV+
Sbjct: 390 DPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESVE 434

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 13/111 (11%), Positives = 20/111 (18%), Gaps = 7/111 (6%)

Query: 386 APSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNW 445
                     P P  +    +P+ +          T   L                    
Sbjct: 328 REVVAQDTGVPRPGLST-IFSPSRSTFGVDLLVAHTDVYLDGQVHAEKL-----TANEIV 381

Query: 446 RVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPP 496
              S     P   +A     +  L  PVQ   S   +              
Sbjct: 382 TALSVPLVDPTDVAASVL-QATVLSQPVQTLDSLRAARHGALDADGVDFSE 431

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 11/114 (9%), Positives = 16/114 (14%), Gaps = 9/114 (7%)

Query: 398 PTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWR 457
              A +   P P   T   P   T      V      ++                     
Sbjct: 329 EVVAQDTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAE---------KLTANE 379

Query: 458 PSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPP 511
                  P             +   + P   L               V      
Sbjct: 380 IVTALSVPLVDPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESV 433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 9/112 (8%), Positives = 18/112 (16%), Gaps = 7/112 (6%)

Query: 377 CLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVN 436
            L            P  ST                 T                  +  ++
Sbjct: 326 VLREVVAQDTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALS 385

Query: 437 SPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSP 488
            P   P                +    +P + L         ++ +      
Sbjct: 386 VPLVDP-------TDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFS 430

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 9/75 (12%), Positives = 11/75 (14%), Gaps = 1/75 (1%)

Query: 380 GGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPN 439
           G S      +       +  P        PA           P    P P          
Sbjct: 2   GSSQHHHHHSSGLVPRGSHMPQGGGYAE-PAGRDYDYGQSGAPDYGQPAPGGYSGYGQGG 60

Query: 440 PPPRNWRVRSHTPPQ 454
                  V       
Sbjct: 61  YGSAGTSVTLQLDDG 75

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 23/139 (16%), Positives = 32/139 (23%), Gaps = 1/139 (0%)

Query: 388 STPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRV 447
             P K      +     R     P  P              P           P R+  +
Sbjct: 20  DEPAKTKKGLSSILDAARWNRGEPQVPDFRHLKAEVDAEK-PGATDRKGGVGMPSRDRNI 78

Query: 448 RSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQS 507
            +     P     P    S    P    P     S+P      +S  PP S       +S
Sbjct: 79  GAPGQDTPGVSLHPLSLDSPDREPGADAPLELGDSSPQGPMSLESLAPPESTDEGAETES 138

Query: 508 PPPPTPVQSPPPPVHSPPP 526
           P P    +     +   P 
Sbjct: 139 PEPGDEGEPGRSGLELEPE 157

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 43.9 bits (103), Expect = 5e-05
 Identities = 16/99 (16%), Positives = 26/99 (26%), Gaps = 9/99 (9%)

Query: 428 VPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPS 487
           +PT         P P              +P  PAP   +     +Q   +++ +     
Sbjct: 4   IPTQTFYGRRWRPAPV--------QRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQP 55

Query: 488 PLPQSPPPPPSVKYPPPVQSPPPPTPVQSPPPPVHSPPP 526
              Q        K PPP +      P +        P  
Sbjct: 56  KQKQKRAQKKPKKTPPP-KPKKTQKPKKPTQKKKSKPGK 93

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 43.9 bits (103), Expect = 6e-05
 Identities = 17/87 (19%), Positives = 21/87 (24%), Gaps = 6/87 (6%)

Query: 441 PPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVK 500
             R WR      P P +   P P+P  P                  +   Q        +
Sbjct: 10  YGRRWR------PAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQ 63

Query: 501 YPPPVQSPPPPTPVQSPPPPVHSPPPP 527
             P    PP P   Q P  P       
Sbjct: 64  KKPKKTPPPKPKKTQKPKKPTQKKKSK 90

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 11/87 (12%), Positives = 20/87 (22%)

Query: 386 APSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNW 445
             +   +   P P      +   PAPP     P    + +  +              +  
Sbjct: 6   TQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKK 65

Query: 446 RVRSHTPPQPWRPSAPAPEPSKPLLPP 472
             ++  P          P   K   P 
Sbjct: 66  PKKTPPPKPKKTQKPKKPTQKKKSKPG 92

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 24/114 (21%), Positives = 31/114 (27%), Gaps = 8/114 (7%)

Query: 377 CLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPA-PPTPSPPPPPTPKPLTPVPTPLPPV 435
            +          T       T  PA E     P+             + +       PP 
Sbjct: 332 WVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPP- 390

Query: 436 NSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPL 489
                PP         PPQ + P    P+   P  PP   PP   Q  PP +P 
Sbjct: 391 -QGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPP--PPQGAPP---QGAPPAAPP 438

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 23/116 (19%), Positives = 28/116 (24%), Gaps = 6/116 (5%)

Query: 404 QRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAP 463
           Q  P                       P    +   P     +++             A 
Sbjct: 328 QTFPWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAA 387

Query: 464 EPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPP---PVQSPPPPTPVQS 516
            P +   PP Q  P       PP   P    PP     PP   P Q  PP  P Q 
Sbjct: 388 YPPQGYAPPPQGYP---PQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQG 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 37/313 (11%), Positives = 82/313 (26%), Gaps = 92/313 (29%)

Query: 96  NSNITVVAGIDLNGNDIAGYFPAELGWLSD---LALFHVNSN------RFCGI------- 139
           + +I     +D+   ++           SD     L  +           CG+       
Sbjct: 2   SLDIQS---LDIQCEEL-----------SDARWAELLPLLQQCQVVRLDDCGLTEARCKD 47

Query: 140 IPESLSNWKLIYEFDVSNNRLVGS----------FPN-----VCLSW------------- 171
           I  +L     + E ++ +N L              P+     + L               
Sbjct: 48  ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107

Query: 172 -----TSLRYLDLRYNNFEGEVPRELFKM------KLDAIFLNNNRFSSWIPETIGE--- 217
                 +L+ L L  N       + L +       +L+ + L     S+   E +     
Sbjct: 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR 167

Query: 218 --STVSVVTFAHNNFSGCVPRSIG-----NMPNVNEIILSNNDL--MGC--LPSEIGWLK 266
                  +T ++N+ +    R +      +   +  + L +  +    C  L   +    
Sbjct: 168 AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA 227

Query: 267 KLTVFDASSNSFYGSVPQSFS-----SLESIHRLVLSYNQLT----GYVSEQICKLPNIN 317
            L      SN                    +  L +    +T    G +   +    ++ 
Sbjct: 228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287

Query: 318 NFTFSYNYFQGLG 330
             + + N     G
Sbjct: 288 ELSLAGNELGDEG 300

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 25/184 (13%), Positives = 58/184 (31%), Gaps = 45/184 (24%)

Query: 172 TSLRYLDLRYNNFEGEVPRELFKM--KLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNN 229
             ++ LD++          EL  +  +   + L++          + E+    ++ A   
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG--------LTEARCKDISSA--- 51

Query: 230 FSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGW------LK----KLTVFDASSNSF- 278
                   +   P + E+ L +N+L      ++G       L+    K+      +    
Sbjct: 52  --------LRVNPALAELNLRSNEL-----GDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 98

Query: 279 ---YGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKL-----PNINNFTFSYNYFQGLG 330
               G +  +  +L ++  L LS N L     + +C+        +      Y       
Sbjct: 99  GAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158

Query: 331 NECI 334
            E +
Sbjct: 159 CEPL 162

>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1 Length = 332

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 9/51 (17%), Positives = 17/51 (33%)

Query: 448 RSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPS 498
            S        P+AP+P P+  +         +  S    + +P     P +
Sbjct: 12  SSGHIEGRHMPAAPSPAPAGAVAGGPAAGVPAAASGAAEAAMPLPAALPGA 62

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 23/161 (14%), Positives = 52/161 (32%), Gaps = 19/161 (11%)

Query: 156 SNNRL----VGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSS 209
            +  L      SF N+    + + ++++R       +  +  K    L  + + N     
Sbjct: 64  IDVTLQQLESHSFYNL----SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM 119

Query: 210 WIPETIGESTVSVVTF---AHNNFSGCVP-RSIGNMPNV-NEIILSNNDLMGCLPSEIGW 264
             P+     +  +        N +   +P  +   + N    + L NN     +      
Sbjct: 120 -FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFN 177

Query: 265 LKKLTVFDASSNSFYGSVPQ-SFSSLES-IHRLVLSYNQLT 303
             KL     + N +   + + +F  + S    L +S   +T
Sbjct: 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 34/167 (20%), Positives = 59/167 (35%), Gaps = 30/167 (17%)

Query: 162 GSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVS 221
           GS  +  +      +L+LR         REL         L+N + +    E +    V+
Sbjct: 1   GSSGSSGMDMKRRIHLELRNRTPAAV--RELV--------LDNCKSNDGKIEGLTAEFVN 50

Query: 222 VVTFAHNNFSGCVPRSIGN---MPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSF 278
           +      +       S+ N   +P + ++ LS N + G L      L  LT  + S N  
Sbjct: 51  LEFL---SLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107

Query: 279 YGSVPQSFSSLESIHR------LVLSYNQLT---GYVSEQICKLPNI 316
                +  S+LE + +      L L   ++T    Y       LP +
Sbjct: 108 -----KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL 149

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 10/128 (7%)

Query: 196 KLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGN---MPNVNEIILSNN 252
            +  + L+N+R +    E + +    +      +       SI N   +  + ++ LS+N
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFL---STINVGLTSIANLPKLNKLKKLELSDN 74

Query: 253 DLMGCLPSEIGWLKKLTVFDASSNSFYG-SVPQSFSSLESIHRLVLSYN---QLTGYVSE 308
            + G L         LT  + S N     S  +    LE++  L L       L  Y   
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYREN 134

Query: 309 QICKLPNI 316
               LP +
Sbjct: 135 VFKLLPQL 142

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 11/64 (17%), Positives = 18/64 (28%), Gaps = 1/64 (1%)

Query: 373 SKDVCLGGGSPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVP-TP 431
           +K++          P   P  ++              AP     P P +  P  PV   P
Sbjct: 85  AKEIYYDVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAP 144

Query: 432 LPPV 435
           +   
Sbjct: 145 VTAT 148

>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL, AG I/II protei surface adhesin, peptidoglycan-anchor; 2.30A {Streptococcus gordonii} Length = 349

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 16/45 (35%), Positives = 18/45 (40%)

Query: 397 TPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPP 441
           +   A    T   AP  P+ P   T KPL P P      N P PP
Sbjct: 301 SNINAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPP 345

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 15/54 (27%), Positives = 17/54 (31%)

Query: 382 SPPSAPSTPPKPSTPTPTPAPEQRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPV 435
           S  +A   P K   P PTPA     P  A P P     P          P+   
Sbjct: 95  SELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKAS 148

>3vf0_A Vinculin, metavinculin; cytoskeletal F-actin binding protein, CEL adhesion-protein binding complex; HET: EPE; 2.54A {Homo sapiens} Length = 283

 Score = 41.2 bits (95), Expect = 5e-04
 Identities = 26/108 (24%), Positives = 31/108 (28%), Gaps = 4/108 (3%)

Query: 415 SPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPE----PSKPLL 470
           +PP PP P+   P P P PP       P          P          E     SKP +
Sbjct: 8   APPKPPLPEGEVPPPRPPPPEEKDEEFPEQKAGEVINQPMMMAARQLHDEARKWSSKPGI 67

Query: 471 PPVQYPPSSVQSTPPPSPLPQSPPPPPSVKYPPPVQSPPPPTPVQSPP 518
           P  +     V             PP     Y P +   P   PV  P 
Sbjct: 68  PAAEVGIGVVAEADAADAAGFPVPPDMEDDYEPELLLMPSNQPVNQPI 115

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.5 bits (96), Expect = 5e-04
 Identities = 33/313 (10%), Positives = 85/313 (27%), Gaps = 26/313 (8%)

Query: 15  SSFSSFSFALSDAEAAFLVRRQLLTLPQDGKLPDNIENEKHMLLSKHSRRPYIRTRLTRQ 74
            +FSS   A   A      + +   +    ++   ++ E       +         + + 
Sbjct: 41  KNFSSAGEAEKAAGKLIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKI 100

Query: 75  GNWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVN-S 133
                        +            +  GI  N    A +   E  +  D+       S
Sbjct: 101 LKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHF---EGLFWGDIDFEEQEIS 157

Query: 134 NRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELF 193
                 +   L    L+    +     +           +L+ L++        V  ++ 
Sbjct: 158 WIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK---KPRPNLKSLEIISGGLPDSVVEDIL 214

Query: 194 KMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNND 253
              L    L        + +   +  ++V     +             PN+  + + + +
Sbjct: 215 GSDLPN--LEKLVLYVGVEDYGFDGDMNVFRPLFSK---------DRFPNLKWLGIVDAE 263

Query: 254 LMGCLPSEIG---WLKKLTVFDASSNSFYGS----VPQSFSSLESIHRLVLSYNQLTGYV 306
               +         L +L   D S+          +      ++ +  + + YN L+  +
Sbjct: 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323

Query: 307 SEQICK-LPNINN 318
            +++ K LP   +
Sbjct: 324 KKELQKSLPMKID 336

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 6e-04
 Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 234 VPRSIGNMPNVNEIILSNNDLMGCLPSE-IGWLKKLTVFDASSNSFYGSVPQSFSSLESI 292
               +    N+ E+ + N   +  L    +  L +L       +      P +F     +
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 293 HRLVLSYNQLT 303
            RL LS+N L 
Sbjct: 83  SRLNLSFNALE 93

>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538

 Score = 40.8 bits (95), Expect = 9e-04
 Identities = 14/80 (17%), Positives = 20/80 (25%), Gaps = 3/80 (3%)

Query: 404 QRTPTPAPPTPSPPPPPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAP 463
            R   P+            K       P P  + P     +WR     P Q      P+ 
Sbjct: 7   CRLDPPSQDLKDGTQEEATKRQEAPVDPRPEGD-PQRTVISWRGAVIEPEQG--TELPSR 63

Query: 464 EPSKPLLPPVQYPPSSVQST 483
               P  PP+    +     
Sbjct: 64  RAEVPTKPPLPPARTQGTPV 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	527
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.98
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.97
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.96
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.95
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.91
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.9
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.85
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.76
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.65
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.6
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.59
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.52
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.48
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.48
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.36
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.29
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.27
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.22
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.21
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.13
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.07
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.01
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.97
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.83
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.78
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.63
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.61
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.31
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.25
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.07
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.99
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.9
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.83
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.89
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.61
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	80.59

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.6e-37  Score=307.01  Aligned_cols=274  Identities=22%  Similarity=0.366  Sum_probs=246.5

Q ss_pred             CCCCC-CCCCcc--ccceeeCCCCCCCCcceEEEEEcCCCCcCC--CCccccCCCCCCCEEEccC-CcccccccccccCC
Q 045837           74 QGNWV-GTDVCS--YYGVFCAPAPDNSNITVVAGIDLNGNDIAG--YFPAELGWLSDLALFHVNS-NRFCGIIPESLSNW  147 (527)
Q Consensus        74 ~~~w~-~~~~c~--~~gv~c~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~-n~i~~~~~~~~~~l  147 (527)
                      +.+|. +.++|.  |.||.|...   ....+|++|+|++|.+.+  .++..|.++++|++|+|++ |++.+.++..|.++
T Consensus        24 l~~W~~~~~~C~~~w~gv~C~~~---~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l  100 (313)
T 1ogq_A           24 LSSWLPTTDCCNRTWLGVLCDTD---TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL  100 (313)
T ss_dssp             GTTCCTTSCTTTTCSTTEEECCS---SSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC
T ss_pred             ccCCCCCCCCCcCCCcceEeCCC---CCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcC
Confidence            45785 567898  999999642   123689999999999998  8899999999999999995 99999999999999


Q ss_pred             CCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhc-cccchhhccccccccccccccCCC--CcceEe
Q 045837          148 KLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIGES--TVSVVT  224 (527)
Q Consensus       148 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~--~L~~L~  224 (527)
                      .+|++|+|++|++++.++..|.++.+|++|+|++|.+++.++..+.. .+|++|+|++|++++.++..++..  +|++|+
T Consensus       101 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~  180 (313)
T 1ogq_A          101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT  180 (313)
T ss_dssp             TTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE
T ss_pred             CCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE
Confidence            99999999999999999999999999999999999999888887766 799999999999998888777653  699999


Q ss_pred             ccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCC
Q 045837          225 FAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTG  304 (527)
Q Consensus       225 L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  304 (527)
                      +++|++.+.++..|..+. |++|+|++|.+++..+..|..+++|++|+|++|++++.++. +..+.+|++|+|++|+|++
T Consensus       181 L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~  258 (313)
T 1ogq_A          181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG  258 (313)
T ss_dssp             CCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE
T ss_pred             CcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC
Confidence            999999999999999987 99999999999989999999999999999999999977665 7888999999999999999


Q ss_pred             cchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCC-CCCC
Q 045837          305 YVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNC-LAQR  353 (527)
Q Consensus       305 ~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~  353 (527)
                      .++..+..+++|++|+|++|++++.++.. ..+.+|+.+++++|. +++.
T Consensus       259 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             CCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred             cCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence            99999999999999999999999888875 788999999999886 5543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.3e-34  Score=318.67  Aligned_cols=276  Identities=25%  Similarity=0.379  Sum_probs=246.6

Q ss_pred             cceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEe
Q 045837           99 ITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLD  178 (527)
Q Consensus        99 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  178 (527)
                      +.+|+.|+|++|.+.+.++..+.++++|++|+|++|++.+.++..|.++.+|++|+|++|++.+.++..+..+.+|++|+
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  472 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI  472 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence            56789999999999888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCcchhhhc-cccchhhccccccccccccccCC-CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCC
Q 045837          179 LRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIGE-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMG  256 (527)
Q Consensus       179 Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  256 (527)
                      |++|.+++.++..+.. .+|++|+|++|++++.++..++. .+|++|+|++|++.+.++..++++.+|++|+|++|.+.|
T Consensus       473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g  552 (768)
T 3rgz_A          473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG  552 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred             ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence            9999999888887776 68999999999999988888765 569999999999999999999999999999999999887


Q ss_pred             CChhhc----------------------------------------------------------------------cCCC
Q 045837          257 CLPSEI----------------------------------------------------------------------GWLK  266 (527)
Q Consensus       257 ~~p~~~----------------------------------------------------------------------~~l~  266 (527)
                      .+|..+                                                                      +.+.
T Consensus       553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~  632 (768)
T 3rgz_A          553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG  632 (768)
T ss_dssp             BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred             cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence            766543                                                                      3356


Q ss_pred             CCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCC
Q 045837          267 KLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDT  346 (527)
Q Consensus       267 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~  346 (527)
                      +|++|||++|+++|.+|..++.+.+|+.|+|++|+++|.++..++++++|++|||++|+++|.++..+.++.+|++||++
T Consensus       633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls  712 (768)
T 3rgz_A          633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS  712 (768)
T ss_dssp             CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred             cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCC---CCCCCcccccccCCCCCCC
Q 045837          347 SNCLAQRPS---QKWATTCSPVVSNPVDCSK  374 (527)
Q Consensus       347 ~N~l~~~~~---~~~~~~~~~~~~np~~C~~  374 (527)
                      +|.|++...   ++.......+.+|+..|+.
T Consensus       713 ~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~  743 (768)
T 3rgz_A          713 NNNLSGPIPEMGQFETFPPAKFLNNPGLCGY  743 (768)
T ss_dssp             SSEEEEECCSSSSGGGSCGGGGCSCTEEEST
T ss_pred             CCcccccCCCchhhccCCHHHhcCCchhcCC
Confidence            999996542   2333344567899999975

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.8e-32  Score=286.35  Aligned_cols=279  Identities=19%  Similarity=0.238  Sum_probs=186.1

Q ss_pred             CCCcceEEEEEcCCCCcCCCC-ccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcc--cccCC
Q 045837           96 NSNITVVAGIDLNGNDIAGYF-PAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNV--CLSWT  172 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~  172 (527)
                      +.++++|++|+|++|.+.+.+ +..|.++++|++|+|++|++.+..+..|.++.+|++|+|++|++++..+..  |..+.
T Consensus        50 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~  129 (455)
T 3v47_A           50 FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT  129 (455)
T ss_dssp             TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCT
T ss_pred             hccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcc
Confidence            445556666666666554333 334556666666666666666555556666666666666666665433222  55566


Q ss_pred             cccEEecccCCCCCCcchhhh-c-cccchhhccccccccccccccCC---------------------------------
Q 045837          173 SLRYLDLRYNNFEGEVPRELF-K-MKLDAIFLNNNRFSSWIPETIGE---------------------------------  217 (527)
Q Consensus       173 ~L~~L~Ls~n~i~~~~p~~~~-~-~~L~~L~L~~n~l~~~~~~~~~~---------------------------------  217 (527)
                      +|++|+|++|.+++..+..++ . .+|++|++++|++.+.....+..                                 
T Consensus       130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~  209 (455)
T 3v47_A          130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF  209 (455)
T ss_dssp             TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTT
T ss_pred             cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccc
Confidence            666666666666644444322 2 46666666666665544433221                                 


Q ss_pred             --CCcceEeccCCcCCccCCCCC-------------------------------------C--CCCCCcEEEcccCCCCC
Q 045837          218 --STVSVVTFAHNNFSGCVPRSI-------------------------------------G--NMPNVNEIILSNNDLMG  256 (527)
Q Consensus       218 --~~L~~L~L~~n~l~~~~~~~l-------------------------------------~--~l~~L~~L~Ls~N~l~~  256 (527)
                        .+|++|++++|++.+..+..+                                     .  ...+|++|++++|.+.+
T Consensus       210 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  289 (455)
T 3v47_A          210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA  289 (455)
T ss_dssp             TTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE
T ss_pred             ccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc
Confidence              235555555554433111100                                     0  11467777777777776


Q ss_pred             CChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCC
Q 045837          257 CLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPG  336 (527)
Q Consensus       257 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~  336 (527)
                      ..+..++.+++|++|+|++|++++..+..|.++.+|++|+|++|++++..+..+.++.+|++|+|++|++++..+..|.+
T Consensus       290 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  369 (455)
T 3v47_A          290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG  369 (455)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence            67777888899999999999998887888888999999999999998888888889999999999999998888888889


Q ss_pred             CCCCceecCCCCCCCCCCCCCCC----CcccccccCCCCCCC
Q 045837          337 SKEGGVFDDTSNCLAQRPSQKWA----TTCSPVVSNPVDCSK  374 (527)
Q Consensus       337 l~~L~~L~l~~N~l~~~~~~~~~----~~~~~~~~np~~C~~  374 (527)
                      +.+|++|++++|.|++++...+.    -....+.+|++.|+.
T Consensus       370 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  411 (455)
T 3v47_A          370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  411 (455)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             cccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence            99999999999999987754332    234456788888864

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.6e-33  Score=306.28  Aligned_cols=270  Identities=19%  Similarity=0.291  Sum_probs=210.3

Q ss_pred             CCCCC-CCCCccc---cceeeCCCCCCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcc-------------
Q 045837           74 QGNWV-GTDVCSY---YGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRF-------------  136 (527)
Q Consensus        74 ~~~w~-~~~~c~~---~gv~c~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i-------------  136 (527)
                      ..+|. +.++|.|   .||.|+..      .+|+.|+|+++++.|.++..|+++++|++|+|++|++             
T Consensus        57 ~~~W~~~~~~c~w~~~~GV~C~~~------~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~  130 (636)
T 4eco_A           57 GANWNFNKELDMWGAQPGVSLNSN------GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGIS  130 (636)
T ss_dssp             -CCCCCSSCGGGTTCCTTEEECTT------CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBC
T ss_pred             CCCCCCCCCcccccCCCCeEEcCC------CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccc
Confidence            34785 6789999   99999632      5899999999999999999999999999999988843             


Q ss_pred             -----------------------------------------------------------------cccccccccCCCCCc
Q 045837          137 -----------------------------------------------------------------CGIIPESLSNWKLIY  151 (527)
Q Consensus       137 -----------------------------------------------------------------~~~~~~~~~~l~~L~  151 (527)
                                                                                       ++ ++..|+++++|+
T Consensus       131 ~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~  209 (636)
T 4eco_A          131 ANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLR  209 (636)
T ss_dssp             TTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCC
T ss_pred             cCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCC
Confidence                                                                             34 677788899999


Q ss_pred             EEEeecCcCccc-----------------CCcccc--cCCcccEEecccCCCCCCcchhhhc-cccchhhccccc-ccc-
Q 045837          152 EFDVSNNRLVGS-----------------FPNVCL--SWTSLRYLDLRYNNFEGEVPRELFK-MKLDAIFLNNNR-FSS-  209 (527)
Q Consensus       152 ~L~Ls~n~l~~~-----------------~~~~~~--~l~~L~~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~-l~~-  209 (527)
                      +|+|++|++++.                 ++..+.  ++.+|++|+|++|.+.+.++..+.. .+|++|+|++|+ +++ 
T Consensus       210 ~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~  289 (636)
T 4eco_A          210 QFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE  289 (636)
T ss_dssp             EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHH
T ss_pred             EEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccc
Confidence            999999999875                 888888  8999999999999988888887776 689999999998 887 


Q ss_pred             ccccccCC-------CCcceEeccCCcCCccCCC--CCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccc
Q 045837          210 WIPETIGE-------STVSVVTFAHNNFSGCVPR--SIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYG  280 (527)
Q Consensus       210 ~~~~~~~~-------~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  280 (527)
                      .++..++.       .+|++|++++|++. .++.  .|+++.+|++|+|++|.++|.++ .++.+++|++|+|++|+++ 
T Consensus       290 ~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-  366 (636)
T 4eco_A          290 QLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-  366 (636)
T ss_dssp             HHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-
T ss_pred             cchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-
Confidence            66666654       57888888888888 6777  78888888888888888887777 7777777777777777777 


Q ss_pred             cCCcccCCCCC-CcEEeccCCCCCCcchhhhhCCC--CCcEEEecCcccCCCCCCCCC-------CCCCCceecCCCCCC
Q 045837          281 SVPQSFSSLES-IHRLVLSYNQLTGYVSEQICKLP--NINNFTFSYNYFQGLGNECIP-------GSKEGGVFDDTSNCL  350 (527)
Q Consensus       281 ~~p~~~~~l~~-L~~L~Ls~N~l~~~~~~~l~~l~--~L~~L~Ls~N~l~~~~~~~~~-------~l~~L~~L~l~~N~l  350 (527)
                      .++..+..+.+ |++|+|++|+++ .++..+..+.  +|++|++++|++++..+..+.       .+.+|+.|++++|.|
T Consensus       367 ~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l  445 (636)
T 4eco_A          367 EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI  445 (636)
T ss_dssp             ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC
T ss_pred             cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc
Confidence            66666777777 777777777777 4455555433  677777777777666665555       555666666666666


Q ss_pred             CCCC
Q 045837          351 AQRP  354 (527)
Q Consensus       351 ~~~~  354 (527)
                      +.++
T Consensus       446 ~~lp  449 (636)
T 4eco_A          446 SKFP  449 (636)
T ss_dssp             CSCC
T ss_pred             CcCC
Confidence            6544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.98  E-value=3.9e-32  Score=283.90  Aligned_cols=260  Identities=14%  Similarity=0.196  Sum_probs=225.5

Q ss_pred             CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCccccccccc--ccCCCCCcEEEeecCcCcccCCcc-cccCC
Q 045837           96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPES--LSNWKLIYEFDVSNNRLVGSFPNV-CLSWT  172 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~  172 (527)
                      +..+++|++|+|++|.+.+..+..|.++++|++|+|++|++.+.++..  |.++.+|++|+|++|++++..+.. +.++.
T Consensus        75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  154 (455)
T 3v47_A           75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR  154 (455)
T ss_dssp             TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred             ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence            677889999999999998888888999999999999999998754444  888999999999999998776665 78899


Q ss_pred             cccEEecccCCCCCCcchhhhc-----------------------------------cccchhhcccccccccccccc--
Q 045837          173 SLRYLDLRYNNFEGEVPRELFK-----------------------------------MKLDAIFLNNNRFSSWIPETI--  215 (527)
Q Consensus       173 ~L~~L~Ls~n~i~~~~p~~~~~-----------------------------------~~L~~L~L~~n~l~~~~~~~~--  215 (527)
                      +|++|+|++|.+++..+..+..                                   .+|++|++++|++++..+..+  
T Consensus       155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  234 (455)
T 3v47_A          155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD  234 (455)
T ss_dssp             TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred             cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence            9999999999988655544322                                   468888888887765332211  


Q ss_pred             --------------------------------------CCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCC
Q 045837          216 --------------------------------------GESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC  257 (527)
Q Consensus       216 --------------------------------------~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  257 (527)
                                                            ...+|++|++++|++.+..+..|+.+.+|++|+|++|.+++.
T Consensus       235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  314 (455)
T 3v47_A          235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI  314 (455)
T ss_dssp             HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             cccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence                                                  114699999999999999899999999999999999999988


Q ss_pred             ChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCC
Q 045837          258 LPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGS  337 (527)
Q Consensus       258 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l  337 (527)
                      .+..|.++.+|++|+|++|++++..+..|.++.+|++|+|++|+|++..+..+.++++|++|+|++|+++++....+..+
T Consensus       315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  394 (455)
T 3v47_A          315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL  394 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC
Confidence            88899999999999999999998888899999999999999999999889999999999999999999999888888999


Q ss_pred             CCCceecCCCCCCCCCCC
Q 045837          338 KEGGVFDDTSNCLAQRPS  355 (527)
Q Consensus       338 ~~L~~L~l~~N~l~~~~~  355 (527)
                      .+|+.|++++|.|++...
T Consensus       395 ~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          395 TSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TTCCEEECCSSCBCCCTT
T ss_pred             CcccEEEccCCCcccCCC
Confidence            999999999999986543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=1.2e-31  Score=282.10  Aligned_cols=259  Identities=15%  Similarity=0.153  Sum_probs=133.2

Q ss_pred             CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCccc
Q 045837           96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLR  175 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  175 (527)
                      +..+++|++|+|++|.+.+..+..|.++++|++|+|++|+|.++....|.++.+|++|+|++|++.+..+..|.++.+|+
T Consensus        52 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  131 (477)
T 2id5_A           52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK  131 (477)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCC
Confidence            44455555555555555555455555555555555555555544444455555555555555555555455555555555


Q ss_pred             EEecccCCCCCCcchhhhc-cccchhhccccccccccccccC-CCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCC
Q 045837          176 YLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIG-ESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNND  253 (527)
Q Consensus       176 ~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~  253 (527)
                      +|+|++|.+++..+..+.. .+|++|+|++|++++.....+. ..+|++|+|++|.+.+.....|..+.+|++|++++|.
T Consensus       132 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~  211 (477)
T 2id5_A          132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP  211 (477)
T ss_dssp             EEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred             EEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence            5555555554332322322 3555555555555544333332 2345555555555555444445555555555555554


Q ss_pred             CCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCC
Q 045837          254 LMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNEC  333 (527)
Q Consensus       254 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~  333 (527)
                      +.+.++..+....+|++|+|++|++++.....|..+.+|++|+|++|.|++.....|.++.+|++|+|++|+++++.+..
T Consensus       212 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  291 (477)
T 2id5_A          212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA  291 (477)
T ss_dssp             TCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTT
T ss_pred             cccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHH
Confidence            44343333333345555555555554322234455555555555555555544444555555555555555555555555


Q ss_pred             CCCCCCCceecCCCCCCCCCC
Q 045837          334 IPGSKEGGVFDDTSNCLAQRP  354 (527)
Q Consensus       334 ~~~l~~L~~L~l~~N~l~~~~  354 (527)
                      |.++.+|+.|++++|.|++++
T Consensus       292 ~~~l~~L~~L~L~~N~l~~~~  312 (477)
T 2id5_A          292 FRGLNYLRVLNVSGNQLTTLE  312 (477)
T ss_dssp             BTTCTTCCEEECCSSCCSCCC
T ss_pred             hcCcccCCEEECCCCcCceeC
Confidence            555555555555555555444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=1.2e-31  Score=298.08  Aligned_cols=254  Identities=29%  Similarity=0.465  Sum_probs=220.0

Q ss_pred             eEEEEEcCCCCcCCCCccccCC--CCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEe
Q 045837          101 VVAGIDLNGNDIAGYFPAELGW--LSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLD  178 (527)
Q Consensus       101 ~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  178 (527)
                      +|+.|+|++|.+.+.++..+..  +++|++|+|++|++++.++..|.++.+|++|+|++|++++.++..|..+.+|++|+
T Consensus       369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  448 (768)
T 3rgz_A          369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK  448 (768)
T ss_dssp             TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence            4445555555554444444444  66788888888888888888899999999999999999988899999999999999


Q ss_pred             cccCCCCCCcchhhhc-cccchhhccccccccccccccCC-CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCC
Q 045837          179 LRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIGE-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMG  256 (527)
Q Consensus       179 Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  256 (527)
                      |++|.+++.++..+.. .+|++|+|++|++++.++..++. .+|++|+|++|++.+.++..|+.+.+|++|+|++|.+++
T Consensus       449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  528 (768)
T 3rgz_A          449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG  528 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred             CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence            9999999888887766 68999999999999888877764 569999999999999999999999999999999999999


Q ss_pred             CChhhccCCCCCCEEEccCCcccccCCccc--------------------------------------------------
Q 045837          257 CLPSEIGWLKKLTVFDASSNSFYGSVPQSF--------------------------------------------------  286 (527)
Q Consensus       257 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~--------------------------------------------------  286 (527)
                      .++..++++++|++|||++|.++|.+|..+                                                  
T Consensus       529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  608 (768)
T 3rgz_A          529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS  608 (768)
T ss_dssp             ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred             cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence            999999999999999999999987776543                                                  


Q ss_pred             --------------------CCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCC
Q 045837          287 --------------------SSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDT  346 (527)
Q Consensus       287 --------------------~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~  346 (527)
                                          ..+.+|+.|||++|+++|.++..++++.+|++|+|++|+++|.++..+.++.+|+.||++
T Consensus       609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs  688 (768)
T 3rgz_A          609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS  688 (768)
T ss_dssp             GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             cccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence                                335678999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCC
Q 045837          347 SNCLAQRP  354 (527)
Q Consensus       347 ~N~l~~~~  354 (527)
                      +|.+++..
T Consensus       689 ~N~l~g~i  696 (768)
T 3rgz_A          689 SNKLDGRI  696 (768)
T ss_dssp             SSCCEECC
T ss_pred             CCcccCcC
Confidence            99999654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=5.4e-31  Score=292.38  Aligned_cols=258  Identities=18%  Similarity=0.234  Sum_probs=200.8

Q ss_pred             cceeeCCCCCCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEc-cCCccccc-------------------------
Q 045837           86 YGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHV-NSNRFCGI-------------------------  139 (527)
Q Consensus        86 ~gv~c~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L-s~n~i~~~-------------------------  139 (527)
                      .||.|+.      -.+|+.|+|+++++.|.++..|+++++|++|+| ++|.+.|.                         
T Consensus       315 ~GV~C~~------~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~  388 (876)
T 4ecn_A          315 PGVDLDN------NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYK  388 (876)
T ss_dssp             TTEEECT------TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHH
T ss_pred             CceEecC------CCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhh
Confidence            9999963      268999999999999999999999999999999 77654433                         


Q ss_pred             ---------------------------------------------------ccccccCCCCCcEEEeecCcCcc------
Q 045837          140 ---------------------------------------------------IPESLSNWKLIYEFDVSNNRLVG------  162 (527)
Q Consensus       140 ---------------------------------------------------~~~~~~~l~~L~~L~Ls~n~l~~------  162 (527)
                                                                         ++..|+++.+|++|+|++|++++      
T Consensus       389 ~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~  468 (876)
T 4ecn_A          389 KMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVD  468 (876)
T ss_dssp             HHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSS
T ss_pred             hhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCccccc
Confidence                                                               67778899999999999999987      


Q ss_pred             -----------cCCcccc--cCCcccEEecccCCCCCCcchhhhc-cccchhhccccc-ccc-ccccccCC--------C
Q 045837          163 -----------SFPNVCL--SWTSLRYLDLRYNNFEGEVPRELFK-MKLDAIFLNNNR-FSS-WIPETIGE--------S  218 (527)
Q Consensus       163 -----------~~~~~~~--~l~~L~~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~-l~~-~~~~~~~~--------~  218 (527)
                                 .++..+.  ++.+|++|+|++|.+.+.++..+.. .+|++|+|++|+ +++ .++..++.        .
T Consensus       469 ~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~  548 (876)
T 4ecn_A          469 WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP  548 (876)
T ss_dssp             CSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTT
T ss_pred             ccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccC
Confidence                       3788877  8999999999999988888877776 689999999998 877 56554432        3


Q ss_pred             CcceEeccCCcCCccCCC--CCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCC-CcEE
Q 045837          219 TVSVVTFAHNNFSGCVPR--SIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLES-IHRL  295 (527)
Q Consensus       219 ~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L  295 (527)
                      +|++|+|++|++. .++.  .|+++.+|++|+|++|.++ .++ .|+.+.+|++|+|++|+++ .++..+..+.+ |++|
T Consensus       549 ~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L  624 (876)
T 4ecn_A          549 KIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGL  624 (876)
T ss_dssp             TCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEE
T ss_pred             CccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEE
Confidence            6899999999888 7777  7888888999999998888 777 7888888888888888888 77777888887 8888


Q ss_pred             eccCCCCCCcchhhhhCCCC--CcEEEecCcccCCCCCCCC---C--CCCCCceecCCCCCCCCCC
Q 045837          296 VLSYNQLTGYVSEQICKLPN--INNFTFSYNYFQGLGNECI---P--GSKEGGVFDDTSNCLAQRP  354 (527)
Q Consensus       296 ~Ls~N~l~~~~~~~l~~l~~--L~~L~Ls~N~l~~~~~~~~---~--~l~~L~~L~l~~N~l~~~~  354 (527)
                      +|++|.|+ .++..+..+..  |++|+|++|++.+.++...   .  .+.+|+.|++++|.|+.++
T Consensus       625 ~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp  689 (876)
T 4ecn_A          625 GFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP  689 (876)
T ss_dssp             ECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCC
T ss_pred             ECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccC
Confidence            88888887 45565555443  7777777777766544221   1  2224555555555555443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=6.8e-31  Score=262.43  Aligned_cols=258  Identities=17%  Similarity=0.213  Sum_probs=214.4

Q ss_pred             CCCCccccceeeCCCC---CCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEe
Q 045837           79 GTDVCSYYGVFCAPAP---DNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDV  155 (527)
Q Consensus        79 ~~~~c~~~gv~c~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  155 (527)
                      ..++|.|.|+.|....   ......+|+.|+|++|.+. .++..+.++++|++|+|++|+|. .++..|+++.+|++|+|
T Consensus        57 ~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L  134 (328)
T 4fcg_A           57 NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTL  134 (328)
T ss_dssp             CTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEE
T ss_pred             cccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEEC
Confidence            5688999999984210   0123468999999999998 46778888999999999999999 78888999999999999


Q ss_pred             ecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCC
Q 045837          156 SNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVP  235 (527)
Q Consensus       156 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~  235 (527)
                      ++|+++ .++..+.++.+|++|+|++|++.+.++..+....          +.+   ..-+..+|++|+|++|++. .++
T Consensus       135 s~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~----------~~~---~~~~l~~L~~L~L~~n~l~-~lp  199 (328)
T 4fcg_A          135 ARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD----------ASG---EHQGLVNLQSLRLEWTGIR-SLP  199 (328)
T ss_dssp             ESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-----------CC---CEEESTTCCEEEEEEECCC-CCC
T ss_pred             CCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhcc----------chh---hhccCCCCCEEECcCCCcC-cch
Confidence            999999 7788899999999999999988877776554311          111   1113456888999999888 677


Q ss_pred             CCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCC
Q 045837          236 RSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPN  315 (527)
Q Consensus       236 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  315 (527)
                      ..++++.+|++|+|++|.++ .++..++.+.+|++|+|++|++.+.++..+.++.+|++|+|++|.+.+.++..+.++++
T Consensus       200 ~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~  278 (328)
T 4fcg_A          200 ASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ  278 (328)
T ss_dssp             GGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTT
T ss_pred             HhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCC
Confidence            78889999999999999998 46667889999999999999998899989999999999999999998888988999999


Q ss_pred             CcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCC
Q 045837          316 INNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRP  354 (527)
Q Consensus       316 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  354 (527)
                      |++|+|++|.+.+.++..+.++.+|+.+++..|.+....
T Consensus       279 L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~  317 (328)
T 4fcg_A          279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD  317 (328)
T ss_dssp             CCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred             CCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHh
Confidence            999999999999999999999999999999887776543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=4.4e-31  Score=262.17  Aligned_cols=249  Identities=23%  Similarity=0.300  Sum_probs=224.0

Q ss_pred             CCCCEEEccCCcccc--cccccccCCCCCcEEEeec-CcCcccCCcccccCCcccEEecccCCCCCCcchhhhc-cccch
Q 045837          124 SDLALFHVNSNRFCG--IIPESLSNWKLIYEFDVSN-NRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK-MKLDA  199 (527)
Q Consensus       124 ~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~-~~L~~  199 (527)
                      .++++|+|++|++.+  .++..|.++++|++|+|++ |++.+.++..|.++.+|++|+|++|.+++.++..+.. .+|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            579999999999998  8899999999999999995 9999999999999999999999999999888887766 79999


Q ss_pred             hhccccccccccccccCC-CCcceEeccCCcCCccCCCCCCCCC-CCcEEEcccCCCCCCChhhccCCCCCCEEEccCCc
Q 045837          200 IFLNNNRFSSWIPETIGE-STVSVVTFAHNNFSGCVPRSIGNMP-NVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNS  277 (527)
Q Consensus       200 L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~  277 (527)
                      |+|++|.+++.++..++. .+|++|++++|++.+.++..++.+. +|++|+|++|.+++.++..+..+. |++|+|++|+
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            999999999888877754 6799999999999999999999998 999999999999999999999987 9999999999


Q ss_pred             ccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCCC
Q 045837          278 FYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQK  357 (527)
Q Consensus       278 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  357 (527)
                      +++..+..|..+.+|++|+|++|++++.++. +..+++|++|+|++|++++.++..+..+.+|++|++++|.|++.....
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence            9999999999999999999999999987666 788999999999999999989999999999999999999999443222


Q ss_pred             ---CCCcccccccCCCCCCC
Q 045837          358 ---WATTCSPVVSNPVDCSK  374 (527)
Q Consensus       358 ---~~~~~~~~~~np~~C~~  374 (527)
                         .......+.+|++.|+.
T Consensus       288 ~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          288 GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             TTGGGSCGGGTCSSSEEEST
T ss_pred             ccccccChHHhcCCCCccCC
Confidence               22234457789999874

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=4.1e-30  Score=270.35  Aligned_cols=260  Identities=15%  Similarity=0.079  Sum_probs=233.6

Q ss_pred             CCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcc
Q 045837           95 DNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSL  174 (527)
Q Consensus        95 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  174 (527)
                      .+.++.+|++|+|++|.+.++....|.++++|++|+|++|++.+..+..|.++.+|++|+|++|.+.+..+..|.++.+|
T Consensus        75 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  154 (477)
T 2id5_A           75 AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL  154 (477)
T ss_dssp             TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTC
T ss_pred             hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCC
Confidence            46788999999999999998777778999999999999999999988899999999999999999998888899999999


Q ss_pred             cEEecccCCCCCCcchhhhc-cccchhhccccccccccccccCC-CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccC
Q 045837          175 RYLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIGE-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNN  252 (527)
Q Consensus       175 ~~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N  252 (527)
                      ++|+|++|.+++.....+.. .+|+.|+|++|.+.+.....+.. .+|++|++++|.+.+.++..+....+|++|+|++|
T Consensus       155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n  234 (477)
T 2id5_A          155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC  234 (477)
T ss_dssp             CEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS
T ss_pred             CEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC
Confidence            99999999998433333433 69999999999999877666654 56999999999988888777777779999999999


Q ss_pred             CCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCC
Q 045837          253 DLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNE  332 (527)
Q Consensus       253 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~  332 (527)
                      .+++.....+..+.+|++|+|++|.+++.....|.++.+|++|+|++|++++..+..|.++++|++|+|++|+|+++...
T Consensus       235 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  314 (477)
T 2id5_A          235 NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES  314 (477)
T ss_dssp             CCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGG
T ss_pred             cccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHh
Confidence            99966557899999999999999999988888899999999999999999999899999999999999999999999888


Q ss_pred             CCCCCCCCceecCCCCCCCCCC
Q 045837          333 CIPGSKEGGVFDDTSNCLAQRP  354 (527)
Q Consensus       333 ~~~~l~~L~~L~l~~N~l~~~~  354 (527)
                      .|..+.+|+.|++++|.+....
T Consensus       315 ~~~~l~~L~~L~l~~N~l~c~c  336 (477)
T 2id5_A          315 VFHSVGNLETLILDSNPLACDC  336 (477)
T ss_dssp             GBSCGGGCCEEECCSSCEECSG
T ss_pred             HcCCCcccCEEEccCCCccCcc
Confidence            8999999999999999998543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=1.4e-29  Score=274.14  Aligned_cols=277  Identities=19%  Similarity=0.203  Sum_probs=217.8

Q ss_pred             CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCc-ccccCCcc
Q 045837           96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPN-VCLSWTSL  174 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L  174 (527)
                      +..+++|++|+|++|.++. ++..+.++++|++|++++|++.+..+..+.++++|++|++++|.+.+.++. .+..+.+|
T Consensus       274 ~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  352 (606)
T 3t6q_A          274 FHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL  352 (606)
T ss_dssp             TTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred             hccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence            5567788888888888773 566777888888888888888877777788888888888888887755443 47778888


Q ss_pred             cEEecccCCCCCCc--chhhhc-cccchhhccccccccccccccCC-CCcceEeccCCcCCccCCC-CCCCCCCCcEEEc
Q 045837          175 RYLDLRYNNFEGEV--PRELFK-MKLDAIFLNNNRFSSWIPETIGE-STVSVVTFAHNNFSGCVPR-SIGNMPNVNEIIL  249 (527)
Q Consensus       175 ~~L~Ls~n~i~~~~--p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L  249 (527)
                      ++|++++|.+++..  +..+.. .+|++|++++|++.+..+..+.. .+|++|++++|++.+..+. .+.++.+|++|++
T Consensus       353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  432 (606)
T 3t6q_A          353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL  432 (606)
T ss_dssp             CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred             CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence            88888888887433  333333 68888888888888776666654 5688899998888876554 3788889999999


Q ss_pred             ccCCCCCCChhhccCCCCCCEEEccCCccccc---CCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCccc
Q 045837          250 SNNDLMGCLPSEIGWLKKLTVFDASSNSFYGS---VPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYF  326 (527)
Q Consensus       250 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l  326 (527)
                      ++|.+.+..+..+.++.+|++|+|++|.+++.   ....+..+.+|++|+|++|++++..+..+.++++|++|+|++|++
T Consensus       433 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  512 (606)
T 3t6q_A          433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL  512 (606)
T ss_dssp             TTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc
Confidence            99998877788888899999999999988752   235678888999999999999988888889999999999999999


Q ss_pred             CCCCCCCCCCCCCCceecCCCCCCCCCCCCCC----CCcccccccCCCCCCC
Q 045837          327 QGLGNECIPGSKEGGVFDDTSNCLAQRPSQKW----ATTCSPVVSNPVDCSK  374 (527)
Q Consensus       327 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~----~~~~~~~~~np~~C~~  374 (527)
                      ++..+..+.++..| .|++++|.|++.+....    .-....+.+|+|.|+.
T Consensus       513 ~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  563 (606)
T 3t6q_A          513 TSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC  563 (606)
T ss_dssp             CGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred             CcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence            98888888899999 99999999987764422    2244567899999864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.97  E-value=2.2e-29  Score=272.65  Aligned_cols=158  Identities=15%  Similarity=0.100  Sum_probs=130.8

Q ss_pred             CCcceEeccCCcCCccCC-CCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccc-cCCcccCCCCCCcEE
Q 045837          218 STVSVVTFAHNNFSGCVP-RSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYG-SVPQSFSSLESIHRL  295 (527)
Q Consensus       218 ~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L  295 (527)
                      .+|++|++++|++.+..+ ..+..+.+|++|++++|.+.+..+..+.++++|++|+|++|++++ .++..|..+.+|++|
T Consensus       399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  478 (606)
T 3vq2_A          399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL  478 (606)
T ss_dssp             TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE
Confidence            345666666666665555 467777888888888888887778888889999999999999887 468889999999999


Q ss_pred             eccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCCCCC----CcccccccCCCC
Q 045837          296 VLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWA----TTCSPVVSNPVD  371 (527)
Q Consensus       296 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~----~~~~~~~~np~~  371 (527)
                      +|++|++++..+..+.++++|++|++++|++++..+..+.++.+|+.|++++|.|+.++.....    -....+.+|+|.
T Consensus       479 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~  558 (606)
T 3vq2_A          479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA  558 (606)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred             ECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcc
Confidence            9999999998888999999999999999999999888999999999999999999988765322    234567899999


Q ss_pred             CCCc
Q 045837          372 CSKD  375 (527)
Q Consensus       372 C~~~  375 (527)
                      |+..
T Consensus       559 c~c~  562 (606)
T 3vq2_A          559 CICE  562 (606)
T ss_dssp             CSST
T ss_pred             cCCc
Confidence            9753

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.97  E-value=5.5e-29  Score=267.15  Aligned_cols=153  Identities=23%  Similarity=0.276  Sum_probs=120.0

Q ss_pred             CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCC--ChhhccCCCCCCEEEccCCcccccCCc-ccCCCCCCcE
Q 045837          218 STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC--LPSEIGWLKKLTVFDASSNSFYGSVPQ-SFSSLESIHR  294 (527)
Q Consensus       218 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~  294 (527)
                      .+|++|++++|++.+..+..++++.+|++|+|++|.+++.  ++..+.++.+|++|+|++|++++.++. .+..+.+|++
T Consensus       353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~  432 (562)
T 3a79_B          353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV  432 (562)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred             CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence            4588888888888887778888888889999988888853  345678888899999999988874544 4778888999


Q ss_pred             EeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCCCCC----CcccccccCCC
Q 045837          295 LVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWA----TTCSPVVSNPV  370 (527)
Q Consensus       295 L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~----~~~~~~~~np~  370 (527)
                      |+|++|++++.++..+.  .+|++|++++|+|+.+ +..+.++.+|++|++++|.|+.++.....    -....+.+|+|
T Consensus       433 L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             EECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCC-CTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred             EECCCCCCCcchhhhhc--CcCCEEECCCCcCccc-ChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence            99999988876554443  6899999999999865 44455899999999999999988765222    23345789999


Q ss_pred             CCC
Q 045837          371 DCS  373 (527)
Q Consensus       371 ~C~  373 (527)
                      .|+
T Consensus       510 ~c~  512 (562)
T 3a79_B          510 DCT  512 (562)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            997

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1.2e-28  Score=246.51  Aligned_cols=264  Identities=18%  Similarity=0.182  Sum_probs=145.9

Q ss_pred             CCccccceeeCCCCC----CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEee
Q 045837           81 DVCSYYGVFCAPAPD----NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVS  156 (527)
Q Consensus        81 ~~c~~~gv~c~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  156 (527)
                      ..|+|..+.|.....    .....+++.|+|++|.+++.....|.++++|++|+|++|+|++..+..|.++.+|++|+|+
T Consensus        29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            345566665543210    1122456666666666666555556666666666666666666556666666666666666


Q ss_pred             cCcCcccCCcccccCCcccEEecccCCCCCCcchhhhc-cccchhhcccccccc--ccccccC-CCCcceEeccCCcCCc
Q 045837          157 NNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFSS--WIPETIG-ESTVSVVTFAHNNFSG  232 (527)
Q Consensus       157 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~--~~~~~~~-~~~L~~L~L~~n~l~~  232 (527)
                      +|+++ .++..+.  .+|++|++++|.+++.....+.. .+|++|++++|.+..  .....+. ..+|++|++++|++..
T Consensus       109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence            66665 3333332  56666666666665332222222 466666666666542  2222232 2346666666666553


Q ss_pred             cCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhC
Q 045837          233 CVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICK  312 (527)
Q Consensus       233 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  312 (527)
                       ++..+.  .+|++|++++|.+++..+..+..+.+|++|+|++|.+++..+..+..+.+|++|+|++|+|+ .++..+..
T Consensus       186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~  261 (330)
T 1xku_A          186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD  261 (330)
T ss_dssp             -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred             -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence             222222  45666666666666555555666666666666666666555455556666666666666665 34445556


Q ss_pred             CCCCcEEEecCcccCCCCCCCCCC------CCCCceecCCCCCCC
Q 045837          313 LPNINNFTFSYNYFQGLGNECIPG------SKEGGVFDDTSNCLA  351 (527)
Q Consensus       313 l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~l~~N~l~  351 (527)
                      +++|++|++++|+|+++....|..      ...++.|++++|.+.
T Consensus       262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence            666666666666666555444432      244555666666554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.9e-29  Score=254.70  Aligned_cols=255  Identities=15%  Similarity=0.160  Sum_probs=215.0

Q ss_pred             cceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEe
Q 045837           99 ITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLD  178 (527)
Q Consensus        99 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  178 (527)
                      ..+|++|+|++|++++.....|.++++|++|+|++|+|++..+..|.++.+|++|+|++|++++.....|.++.+|++|+
T Consensus        51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred             cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence            35899999999999987777899999999999999999988888899999999999999999966555688999999999


Q ss_pred             cccCCCCCCcch--hhhc-cccchhhccccc-cccccccccCC-CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCC
Q 045837          179 LRYNNFEGEVPR--ELFK-MKLDAIFLNNNR-FSSWIPETIGE-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNND  253 (527)
Q Consensus       179 Ls~n~i~~~~p~--~~~~-~~L~~L~L~~n~-l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~  253 (527)
                      |++|.++ .++.  .+.. .+|++|++++|. +.......++. .+|++|++++|++.+..+..|..+.+|++|++++|.
T Consensus       131 L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  209 (353)
T 2z80_A          131 LLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ  209 (353)
T ss_dssp             CTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred             CCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence            9999998 5655  3333 799999999994 66655555544 569999999999999889999999999999999999


Q ss_pred             CCCCChhhccCCCCCCEEEccCCcccccCCccc---CCCCCCcEEeccCCCCCCc----chhhhhCCCCCcEEEecCccc
Q 045837          254 LMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSF---SSLESIHRLVLSYNQLTGY----VSEQICKLPNINNFTFSYNYF  326 (527)
Q Consensus       254 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l  326 (527)
                      ++......+..+.+|++|+|++|.+++.....+   .....++.++|+++.+++.    ++..+.++++|++|++++|++
T Consensus       210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l  289 (353)
T 2z80_A          210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL  289 (353)
T ss_dssp             STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC
T ss_pred             cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC
Confidence            974333345568999999999999986554433   2456789999999999863    567789999999999999999


Q ss_pred             CCCCCCCCCCCCCCceecCCCCCCCCCC
Q 045837          327 QGLGNECIPGSKEGGVFDDTSNCLAQRP  354 (527)
Q Consensus       327 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~  354 (527)
                      +++....|..+.+|++|++++|.+++..
T Consensus       290 ~~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          290 KSVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence            9876666789999999999999998654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=2.9e-28  Score=243.66  Aligned_cols=263  Identities=17%  Similarity=0.249  Sum_probs=225.9

Q ss_pred             eEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecc
Q 045837          101 VVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLR  180 (527)
Q Consensus       101 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  180 (527)
                      +++.++++++.+.. ++..+.  .+|++|+|++|+|++.....|.++.+|++|+|++|++++..+..|.++.+|++|+|+
T Consensus        32 ~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            67899999999876 444443  689999999999998888789999999999999999998888999999999999999


Q ss_pred             cCCCCCCcchhhhccccchhhccccccccccccccC-CCCcceEeccCCcCCc--cCCCCCCCCCCCcEEEcccCCCCCC
Q 045837          181 YNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIG-ESTVSVVTFAHNNFSG--CVPRSIGNMPNVNEIILSNNDLMGC  257 (527)
Q Consensus       181 ~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~  257 (527)
                      +|.++ .++..++ .+|++|++++|++++.....+. ..+|++|++++|.+..  .....|.++.+|++|++++|.++ .
T Consensus       109 ~n~l~-~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~  185 (330)
T 1xku_A          109 KNQLK-ELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-T  185 (330)
T ss_dssp             SSCCS-BCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-S
T ss_pred             CCcCC-ccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-c
Confidence            99998 6776655 7999999999999987766554 4679999999999974  56678899999999999999998 5


Q ss_pred             ChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCC
Q 045837          258 LPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGS  337 (527)
Q Consensus       258 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l  337 (527)
                      ++..+.  .+|++|+|++|++++..+..|..+.+|++|+|++|.+++.....+..+++|++|++++|+++. ++..+..+
T Consensus       186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l  262 (330)
T 1xku_A          186 IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADH  262 (330)
T ss_dssp             CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTTTC
T ss_pred             CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-CChhhccC
Confidence            555443  899999999999998888899999999999999999998888889999999999999999995 46678899


Q ss_pred             CCCceecCCCCCCCCCCCCCCCC----------cccccccCCCCC
Q 045837          338 KEGGVFDDTSNCLAQRPSQKWAT----------TCSPVVSNPVDC  372 (527)
Q Consensus       338 ~~L~~L~l~~N~l~~~~~~~~~~----------~~~~~~~np~~C  372 (527)
                      .+|++|++++|.|++++...+..          ....+.+|++.+
T Consensus       263 ~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence            99999999999999887554421          123456788765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.96  E-value=1.2e-28  Score=270.45  Aligned_cols=280  Identities=15%  Similarity=0.193  Sum_probs=221.3

Q ss_pred             CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccc--cccccccCC--CCCcEEEeecCcCcccCCcccccC
Q 045837           96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCG--IIPESLSNW--KLIYEFDVSNNRLVGSFPNVCLSW  171 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~--~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l  171 (527)
                      +..+++|+.|+|++|.+.+..+..|.++++|++|++++|.+..  .....|..+  .+|++|++++|++++..+..|..+
T Consensus       325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  404 (680)
T 1ziw_A          325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL  404 (680)
T ss_dssp             TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred             cccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC
Confidence            4456677777777777777666667777777777777775432  112223222  467778888888887777888889


Q ss_pred             CcccEEecccCCCCCCcchhhhc--cccchhhccccccccccccccCC-CCcceEeccCCcCC--ccCCCCCCCCCCCcE
Q 045837          172 TSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETIGE-STVSVVTFAHNNFS--GCVPRSIGNMPNVNE  246 (527)
Q Consensus       172 ~~L~~L~Ls~n~i~~~~p~~~~~--~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~  246 (527)
                      .+|++|+|++|.+++.++...+.  .+|++|++++|++.+.....+.. .+|++|++++|.+.  +.++..|.++.+|++
T Consensus       405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~  484 (680)
T 1ziw_A          405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI  484 (680)
T ss_dssp             TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred             CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence            99999999999987666643333  68999999999988776666654 56999999999887  467788999999999


Q ss_pred             EEcccCCCCCCChhhccCCCCCCEEEccCCcccccCC--------cccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcE
Q 045837          247 IILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVP--------QSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINN  318 (527)
Q Consensus       247 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  318 (527)
                      |+|++|.+++..+..|.++.+|++|+|++|++++...        ..|.++.+|++|+|++|+|+.+....|.++.+|++
T Consensus       485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~  564 (680)
T 1ziw_A          485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI  564 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence            9999999997777789999999999999999985422        23788999999999999999776677999999999


Q ss_pred             EEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCCC-----CCCcccccccCCCCCCCc
Q 045837          319 FTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQK-----WATTCSPVVSNPVDCSKD  375 (527)
Q Consensus       319 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-----~~~~~~~~~~np~~C~~~  375 (527)
                      |+|++|+++++....|.++.+|+.|++++|.|++.....     ..-....+.+|+|.|+..
T Consensus       565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            999999999988888999999999999999999877542     233455678999999854

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=1.9e-29  Score=272.49  Aligned_cols=269  Identities=16%  Similarity=0.158  Sum_probs=137.6

Q ss_pred             ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837          100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL  179 (527)
Q Consensus       100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  179 (527)
                      .+++.|++++|.+..+....|.++++|++|+|++|.|.+..+..|+++.+|++|+|++|.+++..+..|.++.+|++|+|
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            34444445544444433333444444555555555444444444444445555555555444444444444444555555


Q ss_pred             ccCCCCCCcchhhh-c-cccchhhccccccccccccccCC-CCcceEeccCCcCCccCCCCCC-----------------
Q 045837          180 RYNNFEGEVPRELF-K-MKLDAIFLNNNRFSSWIPETIGE-STVSVVTFAHNNFSGCVPRSIG-----------------  239 (527)
Q Consensus       180 s~n~i~~~~p~~~~-~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~-----------------  239 (527)
                      ++|.++ .++..++ . .+|++|+|++|.+++..+..++. .+|++|+|++|.+.+.....+.                 
T Consensus       131 ~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~  209 (597)
T 3oja_B          131 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI  209 (597)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred             eCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence            554444 3333221 1 34444444444444444333322 2344444444444432110000                 


Q ss_pred             --------------------CCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccC
Q 045837          240 --------------------NMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSY  299 (527)
Q Consensus       240 --------------------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  299 (527)
                                          ...+|++|+|++|.+++.  ..+..+.+|++|+|++|.+++..+..|..+.+|++|+|++
T Consensus       210 ~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  287 (597)
T 3oja_B          210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN  287 (597)
T ss_dssp             CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred             CchhheeeccCCcccccccccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence                                012455555555555532  4566667777777777777666666677777777777777


Q ss_pred             CCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCCCCC-CcccccccCCCCCC
Q 045837          300 NQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWA-TTCSPVVSNPVDCS  373 (527)
Q Consensus       300 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~~~~~~~~np~~C~  373 (527)
                      |.|+++ +..+..+++|++|+|++|.++++ +..+..+.+|+.|++++|.|++.+..... -....+.+|+|.|+
T Consensus       288 N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          288 NRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             SCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred             CCCCCC-CcccccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCCh
Confidence            777653 44445566777777777776643 33455566677777777777655422221 12334556666664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=7.5e-29  Score=263.55  Aligned_cols=154  Identities=22%  Similarity=0.227  Sum_probs=116.1

Q ss_pred             CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCC--CChhhccCCCCCCEEEccCCcccccCCc-ccCCCCCCcE
Q 045837          218 STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMG--CLPSEIGWLKKLTVFDASSNSFYGSVPQ-SFSSLESIHR  294 (527)
Q Consensus       218 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~  294 (527)
                      .+|++|++++|++.+..+..++.+.+|++|+|++|.+++  .++..++.+++|++|+|++|.+++.++. .+..+.+|++
T Consensus       324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~  403 (520)
T 2z7x_B          324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS  403 (520)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred             CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence            357778888888887777777888888888888888875  4456677888888888888888764554 3677788888


Q ss_pred             EeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCCCCC----CcccccccCCC
Q 045837          295 LVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWA----TTCSPVVSNPV  370 (527)
Q Consensus       295 L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~----~~~~~~~~np~  370 (527)
                      |+|++|++++.++..+.  .+|++|++++|+++.+ +..+..+.+|++|++++|.|+.++.....    -....+.+|++
T Consensus       404 L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          404 LNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSI-PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             EECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EECcCCCCCcchhhhhc--ccCCEEECCCCccccc-chhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCC
Confidence            88888888776655443  6889999999998854 55555889999999999999988765221    23445789999


Q ss_pred             CCCC
Q 045837          371 DCSK  374 (527)
Q Consensus       371 ~C~~  374 (527)
                      .|+.
T Consensus       481 ~c~c  484 (520)
T 2z7x_B          481 DCSC  484 (520)
T ss_dssp             CCCH
T ss_pred             cccC
Confidence            9873

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.5e-28  Score=246.10  Aligned_cols=262  Identities=18%  Similarity=0.221  Sum_probs=185.6

Q ss_pred             CccccceeeCCCCC----CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeec
Q 045837           82 VCSYYGVFCAPAPD----NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSN  157 (527)
Q Consensus        82 ~c~~~gv~c~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~  157 (527)
                      .|.|..+.|.....    .....+|+.|+|++|.+.+..+..|.++++|++|+|++|+|++..+..|.++.+|++|+|++
T Consensus        32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            35676666653211    11235678888888888776666778888888888888888877777788888888888888


Q ss_pred             CcCcccCCcccccCCcccEEecccCCCCCCcchh-hhc-cccchhhcccccccc--ccccccCCCCcceEeccCCcCCcc
Q 045837          158 NRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRE-LFK-MKLDAIFLNNNRFSS--WIPETIGESTVSVVTFAHNNFSGC  233 (527)
Q Consensus       158 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~-~~~-~~L~~L~L~~n~l~~--~~~~~~~~~~L~~L~L~~n~l~~~  233 (527)
                      |+++ .++..+.  .+|++|++++|.++ .++.. +.. .+|++|++++|.++.  .....+...+|++|++++|++.+ 
T Consensus       112 n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-  186 (332)
T 2ft3_A          112 NHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-  186 (332)
T ss_dssp             SCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-
T ss_pred             CcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-
Confidence            8877 4444443  67888888888887 44433 333 578888888887753  44455555578888888888775 


Q ss_pred             CCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCC
Q 045837          234 VPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKL  313 (527)
Q Consensus       234 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l  313 (527)
                      ++..+.  .+|++|+|++|.+++..+..+..+.+|++|+|++|++++..+..+..+.+|++|+|++|+|+ .++..+..+
T Consensus       187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l  263 (332)
T 2ft3_A          187 IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL  263 (332)
T ss_dssp             CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred             cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence            343333  57888888888887666677777888888888888887766667777788888888888877 456667778


Q ss_pred             CCCcEEEecCcccCCCCCCCCCCC------CCCceecCCCCCCC
Q 045837          314 PNINNFTFSYNYFQGLGNECIPGS------KEGGVFDDTSNCLA  351 (527)
Q Consensus       314 ~~L~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~l~~N~l~  351 (527)
                      ++|++|++++|+|+++....|...      ..|+.|++++|.+.
T Consensus       264 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             ccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            888888888888877766555442      45777788877765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=3.7e-29  Score=256.10  Aligned_cols=269  Identities=16%  Similarity=0.158  Sum_probs=144.4

Q ss_pred             ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837          100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL  179 (527)
Q Consensus       100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  179 (527)
                      .+++.|+++++.+..+....|..+++|++|+|++|+|.+.....|.++.+|++|+|++|++++..+..|.++.+|++|+|
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            44555555555544433333444555555555555555444444555555555555555555444444445555555555


Q ss_pred             ccCCCCCCcchhhhc--cccchhhccccccccccccccCC-CCcceEeccCCcCCccCCCCC------------------
Q 045837          180 RYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETIGE-STVSVVTFAHNNFSGCVPRSI------------------  238 (527)
Q Consensus       180 s~n~i~~~~p~~~~~--~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l------------------  238 (527)
                      ++|.++ .++..++.  .+|++|++++|++.+.....++. .+|++|++++|++.+.....+                  
T Consensus       125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~  203 (390)
T 3o6n_A          125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI  203 (390)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred             CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCC
Confidence            555554 33333221  34555555555554443333322 334444444444443210000                  


Q ss_pred             -------------------CCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccC
Q 045837          239 -------------------GNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSY  299 (527)
Q Consensus       239 -------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  299 (527)
                                         ....+|++|++++|.+++.  ..+..+.+|++|+|++|.+++..+..|..+.+|++|+|++
T Consensus       204 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  281 (390)
T 3o6n_A          204 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN  281 (390)
T ss_dssp             CSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS
T ss_pred             CCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC
Confidence                               0113456666666666532  3566677777777777777766666777777777777777


Q ss_pred             CCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCCCCC-CcccccccCCCCCC
Q 045837          300 NQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWA-TTCSPVVSNPVDCS  373 (527)
Q Consensus       300 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~~~~~~~~np~~C~  373 (527)
                      |++++. +..+..+++|++|++++|+++++ +..+..+.+|+.|++++|.|+..+..... -....+.+|+|.|+
T Consensus       282 n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          282 NRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             SCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred             CcCccc-CcccCCCCCCCEEECCCCcceec-CccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccch
Confidence            777653 34445667777777777777654 33455566777777777777766432221 22334566777765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=8.2e-29  Score=253.55  Aligned_cols=246  Identities=17%  Similarity=0.132  Sum_probs=188.8

Q ss_pred             CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCccc
Q 045837           96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLR  175 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  175 (527)
                      +..+++|++|+|++|.+.+..+..|.++++|++|+|++|+|.......|.++.+|++|+|++|++.+..+..|.++.+|+
T Consensus        89 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  168 (390)
T 3o6n_A           89 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ  168 (390)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred             ccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCC
Confidence            56677777888888777776666777777888888888877755555567777788888888877766666677777888


Q ss_pred             EEecccCCCCCCcchhhhcccc-------------------chhhccccccccccccccCCCCcceEeccCCcCCccCCC
Q 045837          176 YLDLRYNNFEGEVPRELFKMKL-------------------DAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPR  236 (527)
Q Consensus       176 ~L~Ls~n~i~~~~p~~~~~~~L-------------------~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  236 (527)
                      +|++++|.+++. ... ...+|                   ++|++++|.+......  ...+|++|++++|.+.+.  .
T Consensus       169 ~L~l~~n~l~~~-~~~-~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~  242 (390)
T 3o6n_A          169 NLQLSSNRLTHV-DLS-LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--A  242 (390)
T ss_dssp             EEECCSSCCSBC-CGG-GCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--G
T ss_pred             EEECCCCcCCcc-ccc-cccccceeecccccccccCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc--H
Confidence            888888777632 211 11233                   3344444444332111  124688888999888864  5


Q ss_pred             CCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCC
Q 045837          237 SIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNI  316 (527)
Q Consensus       237 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  316 (527)
                      .+..+.+|++|+|++|.+++..+..|..+++|++|+|++|++++ ++..+..+++|++|+|++|++++ ++..+..+++|
T Consensus       243 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L  320 (390)
T 3o6n_A          243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRL  320 (390)
T ss_dssp             GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTC
T ss_pred             HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcC
Confidence            68899999999999999998888899999999999999999985 55667788999999999999985 46668889999


Q ss_pred             cEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCC
Q 045837          317 NNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQ  352 (527)
Q Consensus       317 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  352 (527)
                      ++|++++|++++..   +..+.+|+.|++++|.++.
T Consensus       321 ~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          321 ENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             SEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred             CEEECCCCccceeC---chhhccCCEEEcCCCCccc
Confidence            99999999998873   6778899999999999984

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=2.6e-29  Score=273.26  Aligned_cols=255  Identities=17%  Similarity=0.218  Sum_probs=179.6

Q ss_pred             CCCcceEEEEEcCCCCcCCC-----------------CccccC--CCCCCCEEEccCCcccccccccccCCCCCcEEEee
Q 045837           96 NSNITVVAGIDLNGNDIAGY-----------------FPAELG--WLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVS  156 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~l~~~-----------------~~~~l~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  156 (527)
                      +.++++|++|+|++|.+++.                 ++..++  ++++|++|+|++|++.+.++..|+++.+|++|+|+
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  281 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA  281 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence            56778888888888888875                 777777  88888888888888888888888888888888888


Q ss_pred             cCc-Ccc-cCCcccccC------CcccEEecccCCCCCCcch--hhhc-cccchhhccccccccccccccC-CCCcceEe
Q 045837          157 NNR-LVG-SFPNVCLSW------TSLRYLDLRYNNFEGEVPR--ELFK-MKLDAIFLNNNRFSSWIPETIG-ESTVSVVT  224 (527)
Q Consensus       157 ~n~-l~~-~~~~~~~~l------~~L~~L~Ls~n~i~~~~p~--~~~~-~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~  224 (527)
                      +|+ +++ .++..+..+      .+|++|+|++|.++ .++.  .+.. .+|++|++++|+++|.++ .++ ..+|++|+
T Consensus       282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~  359 (636)
T 4eco_A          282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN  359 (636)
T ss_dssp             TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred             CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence            887 776 677666665      78888888888887 7776  5554 578888888888886666 433 34577777


Q ss_pred             ccCCcCCccCCCCCCCCCC-CcEEEcccCCCCCCChhhccCCC--CCCEEEccCCcccccCCcccC-------CCCCCcE
Q 045837          225 FAHNNFSGCVPRSIGNMPN-VNEIILSNNDLMGCLPSEIGWLK--KLTVFDASSNSFYGSVPQSFS-------SLESIHR  294 (527)
Q Consensus       225 L~~n~l~~~~~~~l~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~n~l~~~~p~~~~-------~l~~L~~  294 (527)
                      +++|++. .++..++.+.+ |++|+|++|.++ .++..+..+.  +|++|+|++|++++.++..|.       .+.+|++
T Consensus       360 L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~  437 (636)
T 4eco_A          360 LAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS  437 (636)
T ss_dssp             CCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred             CCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence            7777777 56666777777 777777777777 6666665544  677777777777766666666       5566777


Q ss_pred             EeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCC-------CCceecCCCCCCCCCC
Q 045837          295 LVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSK-------EGGVFDDTSNCLAQRP  354 (527)
Q Consensus       295 L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-------~L~~L~l~~N~l~~~~  354 (527)
                      |+|++|+|+++....+..+++|++|+|++|+++.+....+....       +|+.|++++|.|+.++
T Consensus       438 L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp  504 (636)
T 4eco_A          438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS  504 (636)
T ss_dssp             EECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCC
T ss_pred             EECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccC
Confidence            77777777654444455566666666666666643333332221       5566666666655444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=1.9e-28  Score=242.31  Aligned_cols=248  Identities=17%  Similarity=0.178  Sum_probs=171.3

Q ss_pred             CccccceeeCCCCC----CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCccccc--ccccccCCCCCcEEEe
Q 045837           82 VCSYYGVFCAPAPD----NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGI--IPESLSNWKLIYEFDV  155 (527)
Q Consensus        82 ~c~~~gv~c~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L  155 (527)
                      .|.|.++.|.....    .....+|++|+|++|.+..+....|.++++|++|+|++|+|...  .+..+.++.+|++|+|
T Consensus         6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A            6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             eeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            47788777754220    11224566666666666654434456666666666666666532  2344555666666666


Q ss_pred             ecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccc-ccc-CCCCcceEeccCCcCCcc
Q 045837          156 SNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIP-ETI-GESTVSVVTFAHNNFSGC  233 (527)
Q Consensus       156 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~-~~~-~~~~L~~L~L~~n~l~~~  233 (527)
                      ++|.+. .++..+..+.+|++|+|++|.++                       +... ..+ ...+|++|++++|.+.+.
T Consensus        86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~-----------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~  141 (306)
T 2z66_A           86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-----------------------QMSEFSVFLSLRNLIYLDISHTHTRVA  141 (306)
T ss_dssp             CSCSEE-EEEEEEETCTTCCEEECTTSEEE-----------------------SSTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred             CCCccc-cChhhcCCCCCCCEEECCCCccc-----------------------ccccchhhhhccCCCEEECCCCcCCcc
Confidence            666665 34444556666666666666655                       2221 112 234577788888877777


Q ss_pred             CCCCCCCCCCCcEEEcccCCCCC-CChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhC
Q 045837          234 VPRSIGNMPNVNEIILSNNDLMG-CLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICK  312 (527)
Q Consensus       234 ~~~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  312 (527)
                      .+..|..+.+|++|+|++|.+.+ .++..+..+++|++|+|++|++++..+..|..+.+|++|+|++|++++.....+..
T Consensus       142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  221 (306)
T 2z66_A          142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC  221 (306)
T ss_dssp             STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT
T ss_pred             chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC
Confidence            77778888888888888888875 46677888888888888888888777778888888888888888888777777888


Q ss_pred             CCCCcEEEecCcccCCCCCCCCCCC-CCCceecCCCCCCCCC
Q 045837          313 LPNINNFTFSYNYFQGLGNECIPGS-KEGGVFDDTSNCLAQR  353 (527)
Q Consensus       313 l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~  353 (527)
                      +++|++|++++|++++..+..+..+ .+|++|++++|.|+..
T Consensus       222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            8888888888888888877777777 4888888888888754

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=4.6e-28  Score=242.48  Aligned_cols=249  Identities=15%  Similarity=0.213  Sum_probs=213.4

Q ss_pred             CCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcc
Q 045837           95 DNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSL  174 (527)
Q Consensus        95 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  174 (527)
                      .+.++.+|++|+|++|.+++..+..|.++++|++|+|++|++.. ++..+.  .+|++|++++|++++.....|.++.+|
T Consensus        73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L  149 (332)
T 2ft3_A           73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNM  149 (332)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred             HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccC
Confidence            36788999999999999999888999999999999999999984 444443  799999999999997777778999999


Q ss_pred             cEEecccCCCCC--CcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccC
Q 045837          175 RYLDLRYNNFEG--EVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNN  252 (527)
Q Consensus       175 ~~L~Ls~n~i~~--~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N  252 (527)
                      ++|++++|.++.  ..+..+...+|++|++++|++++. +..+. .+|++|++++|.+.+.....|..+.+|++|+|++|
T Consensus       150 ~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l-~~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N  227 (332)
T 2ft3_A          150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGI-PKDLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN  227 (332)
T ss_dssp             CEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSC-CSSSC-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS
T ss_pred             CEEECCCCccccCCCCcccccCCccCEEECcCCCCCcc-Ccccc-CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence            999999999963  444444446999999999999884 33333 57999999999999888888999999999999999


Q ss_pred             CCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhC------CCCCcEEEecCccc
Q 045837          253 DLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICK------LPNINNFTFSYNYF  326 (527)
Q Consensus       253 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~------l~~L~~L~Ls~N~l  326 (527)
                      .+++..+..+..+.+|++|+|++|+++ .++..+..+.+|++|+|++|+|++.....|..      ..+|++|++++|.+
T Consensus       228 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~  306 (332)
T 2ft3_A          228 QIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV  306 (332)
T ss_dssp             CCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred             cCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence            999877778999999999999999998 78888999999999999999999877776654      36789999999998


Q ss_pred             C--CCCCCCCCCCCCCceecCCCCC
Q 045837          327 Q--GLGNECIPGSKEGGVFDDTSNC  349 (527)
Q Consensus       327 ~--~~~~~~~~~l~~L~~L~l~~N~  349 (527)
                      .  +..+..|..+.+|+.|++++|.
T Consensus       307 ~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          307 PYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cccccCcccccccchhhhhhccccc
Confidence            8  6677788999999999999885

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=5e-28  Score=257.20  Aligned_cols=249  Identities=15%  Similarity=0.142  Sum_probs=159.8

Q ss_pred             CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcc-cCCcccccCCcc
Q 045837           96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVG-SFPNVCLSWTSL  174 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L  174 (527)
                      +..+++|++|+|++|.+++..+..|.++++|++|+|++|+|+. ++..  .+.+|++|+|++|++++ .++..|.++.+|
T Consensus        41 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L  117 (520)
T 2z7x_B           41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQL  117 (520)
T ss_dssp             HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTC
T ss_pred             ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcc
Confidence            4566777788888887777667777777788888888887773 4433  67778888888887775 356677778888


Q ss_pred             cEEecccCCCCCCcchhhhcccc--chhhcccccc--ccccccccCC---------------------------------
Q 045837          175 RYLDLRYNNFEGEVPRELFKMKL--DAIFLNNNRF--SSWIPETIGE---------------------------------  217 (527)
Q Consensus       175 ~~L~Ls~n~i~~~~p~~~~~~~L--~~L~L~~n~l--~~~~~~~~~~---------------------------------  217 (527)
                      ++|+|++|.+++.....+  .+|  ++|++++|.+  .+..+..+..                                 
T Consensus       118 ~~L~L~~n~l~~~~~~~l--~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L  195 (520)
T 2z7x_B          118 KFLGLSTTHLEKSSVLPI--AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS  195 (520)
T ss_dssp             CEEEEEESSCCGGGGGGG--TTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEEC
T ss_pred             eEEEecCcccchhhcccc--ccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeec
Confidence            888888887764211111  344  8888888777  3333222211                                 


Q ss_pred             ---------------------------------------------------CCcceEeccCCcCCccCCCCC-----CCC
Q 045837          218 ---------------------------------------------------STVSVVTFAHNNFSGCVPRSI-----GNM  241 (527)
Q Consensus       218 ---------------------------------------------------~~L~~L~L~~n~l~~~~~~~l-----~~l  241 (527)
                                                                         .+|++|++++|++.+.++..+     +.+
T Consensus       196 ~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l  275 (520)
T 2z7x_B          196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSL  275 (520)
T ss_dssp             CEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCC
T ss_pred             cccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccC
Confidence                                                               156777777777776666665     444


Q ss_pred             CCCcEEEcccCCCCCCCh-hh-------------------------ccCCCCCCEEEccCCcccccCCcccCCCCCCcEE
Q 045837          242 PNVNEIILSNNDLMGCLP-SE-------------------------IGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRL  295 (527)
Q Consensus       242 ~~L~~L~Ls~N~l~~~~p-~~-------------------------~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  295 (527)
                      .+|+.+++++|.+  .++ ..                         +..+.+|++|+|++|++++.++..+..+.+|++|
T Consensus       276 ~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  353 (520)
T 2z7x_B          276 KALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL  353 (520)
T ss_dssp             CEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEE
T ss_pred             ceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEE
Confidence            4444444444443  111 00                         1456677777777777776666677777777777


Q ss_pred             eccCCCCCC--cchhhhhCCCCCcEEEecCcccCC-CCCCCCCCCCCCceecCCCCCCC
Q 045837          296 VLSYNQLTG--YVSEQICKLPNINNFTFSYNYFQG-LGNECIPGSKEGGVFDDTSNCLA  351 (527)
Q Consensus       296 ~Ls~N~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~  351 (527)
                      +|++|++++  .++..+.++++|++|++++|++++ +....+..+.+|+.|++++|.|+
T Consensus       354 ~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~  412 (520)
T 2z7x_B          354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT  412 (520)
T ss_dssp             ECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred             EccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence            777777775  344567777777777777777776 33333555566666666666664

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.96  E-value=6.1e-28  Score=261.34  Aligned_cols=253  Identities=15%  Similarity=0.140  Sum_probs=227.5

Q ss_pred             eEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecc
Q 045837          101 VVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLR  180 (527)
Q Consensus       101 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  180 (527)
                      +|+.|+|++|.+.+.....|.++++|++|+|++|+++ .++..+.++.+|++|++++|.+.+..+..+..+.+|++|+++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  333 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK  333 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence            8999999999999988888999999999999999998 677789999999999999999998878889999999999999


Q ss_pred             cCCCCCCcchhhhc--cccchhhcccccccccc--ccccC-CCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCC
Q 045837          181 YNNFEGEVPRELFK--MKLDAIFLNNNRFSSWI--PETIG-ESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLM  255 (527)
Q Consensus       181 ~n~i~~~~p~~~~~--~~L~~L~L~~n~l~~~~--~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  255 (527)
                      +|.+.+.++...+.  .+|++|++++|.+.+..  ...++ ..+|++|++++|++.+..+..|..+.+|++|++++|.+.
T Consensus       334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  413 (606)
T 3t6q_A          334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK  413 (606)
T ss_dssp             SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred             CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence            99998777765433  69999999999998865  44443 467999999999999888889999999999999999998


Q ss_pred             CCChh-hccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCc---chhhhhCCCCCcEEEecCcccCCCCC
Q 045837          256 GCLPS-EIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGY---VSEQICKLPNINNFTFSYNYFQGLGN  331 (527)
Q Consensus       256 ~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~~~~l~~l~~L~~L~Ls~N~l~~~~~  331 (527)
                      +..+. .+..+++|++|+|++|.+++..+..+.++.+|++|+|++|.+++.   ....+..+.+|++|++++|++++..+
T Consensus       414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  493 (606)
T 3t6q_A          414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ  493 (606)
T ss_dssp             CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred             CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence            76654 488999999999999999988888999999999999999999873   23568899999999999999999999


Q ss_pred             CCCCCCCCCceecCCCCCCCCCC
Q 045837          332 ECIPGSKEGGVFDDTSNCLAQRP  354 (527)
Q Consensus       332 ~~~~~l~~L~~L~l~~N~l~~~~  354 (527)
                      ..|.++.+|+.|++++|.|++..
T Consensus       494 ~~~~~l~~L~~L~Ls~N~l~~~~  516 (606)
T 3t6q_A          494 HAFTSLKMMNHVDLSHNRLTSSS  516 (606)
T ss_dssp             TTTTTCTTCCEEECCSSCCCGGG
T ss_pred             hhhccccCCCEEECCCCccCcCC
Confidence            99999999999999999998754

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.96  E-value=1.8e-27  Score=258.52  Aligned_cols=135  Identities=20%  Similarity=0.206  Sum_probs=109.4

Q ss_pred             CCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCccc-ccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcE
Q 045837          240 NMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFY-GSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINN  318 (527)
Q Consensus       240 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  318 (527)
                      .+.+++++++++|.+.+..+..+..+.+|++|+|++|++. +..+..|..+.+|++|+|++|+|+++.+..|.++++|++
T Consensus       443 ~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~  522 (635)
T 4g8a_A          443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV  522 (635)
T ss_dssp             TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence            3344555555555555555556677788889999988744 456778999999999999999999999999999999999


Q ss_pred             EEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCCCCC-----CcccccccCCCCCCC
Q 045837          319 FTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWA-----TTCSPVVSNPVDCSK  374 (527)
Q Consensus       319 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-----~~~~~~~~np~~C~~  374 (527)
                      |+|++|+|+++.+..|.++++|++||+++|.|++.......     -....+.+|+|.|+.
T Consensus       523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  583 (635)
T ss_dssp             EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred             EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence            99999999999998999999999999999999988655432     234567899999984

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=2.8e-28  Score=241.08  Aligned_cols=210  Identities=18%  Similarity=0.227  Sum_probs=138.6

Q ss_pred             CCCcceEEEEEcCCCCcCCC--CccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCC-cccccCC
Q 045837           96 NSNITVVAGIDLNGNDIAGY--FPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFP-NVCLSWT  172 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~  172 (527)
                      +..+++|++|+|++|.+...  .+..+..+.+|++|+|++|.+.. ++..|.++.+|++|++++|++++... ..+..+.
T Consensus        48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  126 (306)
T 2z66_A           48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR  126 (306)
T ss_dssp             TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCT
T ss_pred             hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhcc
Confidence            67889999999999998743  24567789999999999999985 55678999999999999999986554 5788899


Q ss_pred             cccEEecccCCCCCCcchhhhc-cccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEccc
Q 045837          173 SLRYLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSN  251 (527)
Q Consensus       173 ~L~~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  251 (527)
                      +|++|++++|.+++..+..+.. .+|++|++++|.+.+.                      ..+..+..+.+|++|+|++
T Consensus       127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~~~~~~~l~~L~~L~Ls~  184 (306)
T 2z66_A          127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN----------------------FLPDIFTELRNLTFLDLSQ  184 (306)
T ss_dssp             TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG----------------------EECSCCTTCTTCCEEECTT
T ss_pred             CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc----------------------cchhHHhhCcCCCEEECCC
Confidence            9999999999987554443332 3555555555554431                      2344455555555555555


Q ss_pred             CCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCC-CCcEEEecCcccCC
Q 045837          252 NDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLP-NINNFTFSYNYFQG  328 (527)
Q Consensus       252 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~Ls~N~l~~  328 (527)
                      |.+++..+..+..+.+|++|+|++|++++.....+..+.+|++|+|++|++++..+..+..+. +|++|+|++|.+++
T Consensus       185 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            555544444555555555555555555544444455555555555555555555554455542 55555555555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=5.1e-28  Score=261.35  Aligned_cols=246  Identities=17%  Similarity=0.119  Sum_probs=163.4

Q ss_pred             CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCccc
Q 045837           96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLR  175 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  175 (527)
                      +..+.+|+.|+|++|.+.+..+..|+++++|++|+|++|.|.+.....|+++.+|++|+|++|.+++..+..|.++.+|+
T Consensus        95 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  174 (597)
T 3oja_B           95 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ  174 (597)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred             hcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCc
Confidence            34444555555555555544444445555555555555555544333345555555555555555544444455555555


Q ss_pred             EEecccCCCCCCcchhhhccccchhhccccccc-------------------cccccccCCCCcceEeccCCcCCccCCC
Q 045837          176 YLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFS-------------------SWIPETIGESTVSVVTFAHNNFSGCVPR  236 (527)
Q Consensus       176 ~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~-------------------~~~~~~~~~~~L~~L~L~~n~l~~~~~~  236 (527)
                      +|+|++|.+++. +.. ...+|+.|++++|.+.                   .....  ...+|++|+|++|.+.+.  .
T Consensus       175 ~L~L~~N~l~~~-~~~-~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~~--~  248 (597)
T 3oja_B          175 NLQLSSNRLTHV-DLS-LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--A  248 (597)
T ss_dssp             EEECTTSCCSBC-CGG-GCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS--CCSCCCEEECCSSCCCCC--G
T ss_pred             EEECcCCCCCCc-Chh-hhhhhhhhhcccCccccccCCchhheeeccCCcccccccc--cCCCCCEEECCCCCCCCC--h
Confidence            555555554421 100 0122222222222222                   11110  113577888888888764  5


Q ss_pred             CCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCC
Q 045837          237 SIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNI  316 (527)
Q Consensus       237 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  316 (527)
                      .+..+.+|++|+|++|.+.+..+..|+.+.+|++|+|++|.+++ ++..+..+++|+.|+|++|.+++ ++..+..+++|
T Consensus       249 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L  326 (597)
T 3oja_B          249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRL  326 (597)
T ss_dssp             GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTC
T ss_pred             hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCC
Confidence            68899999999999999998889999999999999999999985 56677789999999999999994 56778899999


Q ss_pred             cEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCC
Q 045837          317 NNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQ  352 (527)
Q Consensus       317 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  352 (527)
                      ++|+|++|.|++..   +..+.+|+.|++++|.+++
T Consensus       327 ~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          327 ENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             SEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred             CEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCC
Confidence            99999999998873   6778899999999999874

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.3e-27  Score=249.40  Aligned_cols=228  Identities=16%  Similarity=0.155  Sum_probs=152.0

Q ss_pred             ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837          100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL  179 (527)
Q Consensus       100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  179 (527)
                      .+++.|+|++|++.++.+..|.++++|++|+|++|+|.++.+..|.++.+|++|+|++|++++.....|.++.+|++|+|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            35566666666666655556666666666666666666555556666666666666666666544455555666666666


Q ss_pred             ccCCCCCCcchhhhccccchhhccccccccccccccC-CCCcceEeccCCc-CCccCCCCCCCCCCCcEEEcccCCCCCC
Q 045837          180 RYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIG-ESTVSVVTFAHNN-FSGCVPRSIGNMPNVNEIILSNNDLMGC  257 (527)
Q Consensus       180 s~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  257 (527)
                      ++|.++ .++                      ...+. ..+|++|++++|+ +.......|.++.+|++|+|++|.+++ 
T Consensus       155 ~~N~l~-~~~----------------------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-  210 (452)
T 3zyi_A          155 RNNPIE-SIP----------------------SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-  210 (452)
T ss_dssp             CSCCCC-EEC----------------------TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred             CCCCcc-eeC----------------------HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence            666655 232                      22222 2346666666633 333333457777788888888887773 


Q ss_pred             ChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCC
Q 045837          258 LPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGS  337 (527)
Q Consensus       258 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l  337 (527)
                      ++ .+..+.+|++|+|++|++++..+..|.++.+|++|+|++|+|++..+..|.++++|++|+|++|+|+++....|..+
T Consensus       211 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  289 (452)
T 3zyi_A          211 MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL  289 (452)
T ss_dssp             CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred             cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence            33 46777788888888888877777777778888888888888877777777777888888888888887777777777


Q ss_pred             CCCceecCCCCCCCC
Q 045837          338 KEGGVFDDTSNCLAQ  352 (527)
Q Consensus       338 ~~L~~L~l~~N~l~~  352 (527)
                      .+|+.|++++|.+..
T Consensus       290 ~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          290 RYLVELHLHHNPWNC  304 (452)
T ss_dssp             TTCCEEECCSSCEEC
T ss_pred             cCCCEEEccCCCcCC
Confidence            788888888877654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.95  E-value=9.2e-28  Score=269.47  Aligned_cols=259  Identities=18%  Similarity=0.193  Sum_probs=183.4

Q ss_pred             CCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCccccccccc--ccCCCCCcEEEeecCcCcccCC-cccccC
Q 045837           95 DNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPES--LSNWKLIYEFDVSNNRLVGSFP-NVCLSW  171 (527)
Q Consensus        95 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l  171 (527)
                      .+.++++|++|+|++|.+.+..+..|.++.+|++|+|++|++.+.++..  |.++.+|++|+|++|.+++... ..|.++
T Consensus        68 ~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L  147 (844)
T 3j0a_A           68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL  147 (844)
T ss_dssp             TTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC
T ss_pred             HhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhC
Confidence            3677888999999999998888888899999999999999888755544  8888999999999998886544 468888


Q ss_pred             CcccEEecccCCCCCCcchhhhc---cccchhhccccccccccccccCC-------CCcceEeccCCcCCccCCCCCC--
Q 045837          172 TSLRYLDLRYNNFEGEVPRELFK---MKLDAIFLNNNRFSSWIPETIGE-------STVSVVTFAHNNFSGCVPRSIG--  239 (527)
Q Consensus       172 ~~L~~L~Ls~n~i~~~~p~~~~~---~~L~~L~L~~n~l~~~~~~~~~~-------~~L~~L~L~~n~l~~~~~~~l~--  239 (527)
                      .+|++|+|++|.+++..+..+..   .+|+.|+|++|.+.+..+..++.       ..|++|++++|.+.+..+..+.  
T Consensus       148 ~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~  227 (844)
T 3j0a_A          148 NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA  227 (844)
T ss_dssp             SSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT
T ss_pred             CCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhh
Confidence            99999999999888666655543   56777777777776655443322       2367777777655543322211  


Q ss_pred             ----------------------------------C--CCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCC
Q 045837          240 ----------------------------------N--MPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVP  283 (527)
Q Consensus       240 ----------------------------------~--l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p  283 (527)
                                                        +  ..+|++|+|++|.+.+..+..|..+.+|++|+|++|++++..+
T Consensus       228 l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~  307 (844)
T 3j0a_A          228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD  307 (844)
T ss_dssp             SCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT
T ss_pred             cCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh
Confidence                                              1  1456777777777666666666667777777777777766666


Q ss_pred             cccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCC
Q 045837          284 QSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQR  353 (527)
Q Consensus       284 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  353 (527)
                      ..|.++.+|++|+|++|.+++..+..+.++++|++|++++|++.++....|.++.+|+.|++++|.|+++
T Consensus       308 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i  377 (844)
T 3j0a_A          308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI  377 (844)
T ss_dssp             TTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred             HHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc
Confidence            6666777777777777777666666666777777777777777666666666667777777777666654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.5e-27  Score=248.14  Aligned_cols=228  Identities=17%  Similarity=0.146  Sum_probs=149.6

Q ss_pred             ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837          100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL  179 (527)
Q Consensus       100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  179 (527)
                      .+++.|+|++|++.++....|.++++|++|+|++|+|.++....|.++.+|++|+|++|+++......|..+.+|++|+|
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            34555666666665555555556666666666666665555555566666666666666665444445555566666666


Q ss_pred             ccCCCCCCcchhhhccccchhhccccccccccccccC-CCCcceEeccCCcCCc-cCCCCCCCCCCCcEEEcccCCCCCC
Q 045837          180 RYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIG-ESTVSVVTFAHNNFSG-CVPRSIGNMPNVNEIILSNNDLMGC  257 (527)
Q Consensus       180 s~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~  257 (527)
                      ++|.++                       ......+. ..+|++|+|++|+..+ .....|.++.+|++|+|++|.++ .
T Consensus       144 ~~N~i~-----------------------~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~  199 (440)
T 3zyj_A          144 RNNPIE-----------------------SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E  199 (440)
T ss_dssp             CSCCCC-----------------------EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred             CCCccc-----------------------ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence            666554                       32222222 2456667776643333 33345777778888888888777 4


Q ss_pred             ChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCC
Q 045837          258 LPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGS  337 (527)
Q Consensus       258 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l  337 (527)
                      ++ .+..+.+|++|+|++|++++..+..|.++.+|++|+|++|+|+++.+..|.++++|++|+|++|+|+++....|..+
T Consensus       200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  278 (440)
T 3zyj_A          200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL  278 (440)
T ss_dssp             CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred             cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence            44 46777788888888888777767777777888888888888877777777777888888888888887777777777


Q ss_pred             CCCceecCCCCCCCC
Q 045837          338 KEGGVFDDTSNCLAQ  352 (527)
Q Consensus       338 ~~L~~L~l~~N~l~~  352 (527)
                      .+|+.|++++|.+..
T Consensus       279 ~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          279 HHLERIHLHHNPWNC  293 (440)
T ss_dssp             TTCCEEECCSSCEEC
T ss_pred             cCCCEEEcCCCCccC
Confidence            788888888777653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.95  E-value=1.2e-27  Score=268.56  Aligned_cols=262  Identities=17%  Similarity=0.190  Sum_probs=219.5

Q ss_pred             CCCCcceEEEEEcCCCCcCCCC-ccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcc--cccC
Q 045837           95 DNSNITVVAGIDLNGNDIAGYF-PAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNV--CLSW  171 (527)
Q Consensus        95 ~~~~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l  171 (527)
                      .+.++++|++|+|++|.+.+.+ +..|.++++|++|+|++|+|.+..+..|.++.+|++|+|++|++++.++..  |.++
T Consensus        43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L  122 (844)
T 3j0a_A           43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL  122 (844)
T ss_dssp             SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred             HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence            3677888999999998665554 677889999999999999999888888999999999999999988755544  8888


Q ss_pred             CcccEEecccCCCCCCcch-hhhc-cccchhhccccccccccccccCC---CCcceEeccCCcCCccCCCCCCCCCC---
Q 045837          172 TSLRYLDLRYNNFEGEVPR-ELFK-MKLDAIFLNNNRFSSWIPETIGE---STVSVVTFAHNNFSGCVPRSIGNMPN---  243 (527)
Q Consensus       172 ~~L~~L~Ls~n~i~~~~p~-~~~~-~~L~~L~L~~n~l~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~l~~l~~---  243 (527)
                      .+|++|+|++|.+++..+. .+.. .+|++|+|++|.+++.....++.   .+|++|++++|.+.+..+..++.+.+   
T Consensus       123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  202 (844)
T 3j0a_A          123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR  202 (844)
T ss_dssp             SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTT
T ss_pred             CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccc
Confidence            9999999999998855443 3333 68999999999988877666643   57899999999998877776666655   


Q ss_pred             ---CcEEEcccCCCCCCChhhccC--------------------------------------CCCCCEEEccCCcccccC
Q 045837          244 ---VNEIILSNNDLMGCLPSEIGW--------------------------------------LKKLTVFDASSNSFYGSV  282 (527)
Q Consensus       244 ---L~~L~Ls~N~l~~~~p~~~~~--------------------------------------l~~L~~L~Ls~n~l~~~~  282 (527)
                         |++|++++|.+++..+..+..                                      ..+|++|+|++|.+.+..
T Consensus       203 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~  282 (844)
T 3j0a_A          203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN  282 (844)
T ss_dssp             TCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC
T ss_pred             cCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccC
Confidence               999999999877555433321                                      267999999999999888


Q ss_pred             CcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCC
Q 045837          283 PQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQ  356 (527)
Q Consensus       283 p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  356 (527)
                      +..|..+.+|+.|+|++|+|++..+..|.++.+|++|+|++|++++..+..|.++.+|+.|++++|.|..+...
T Consensus       283 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~  356 (844)
T 3j0a_A          283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ  356 (844)
T ss_dssp             SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSS
T ss_pred             hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChh
Confidence            88999999999999999999999889999999999999999999999899999999999999999999887654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.95  E-value=6.4e-28  Score=259.08  Aligned_cols=278  Identities=17%  Similarity=0.201  Sum_probs=185.7

Q ss_pred             CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcc-cCCcccccCCcc
Q 045837           96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVG-SFPNVCLSWTSL  174 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L  174 (527)
                      +.++++|++|+|++|.+.+..+..|.++++|++|++++|++.+.....|+++.+|++|+|++|.+.+ .++..|.++.+|
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L  151 (570)
T 2z63_A           72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL  151 (570)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred             ccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCC
Confidence            6678888999999988888777788888999999999998887666568889999999999998886 367888889999


Q ss_pred             cEEecccCCCCCCcchhhhc-c----------------------------------------------------------
Q 045837          175 RYLDLRYNNFEGEVPRELFK-M----------------------------------------------------------  195 (527)
Q Consensus       175 ~~L~Ls~n~i~~~~p~~~~~-~----------------------------------------------------------  195 (527)
                      ++|++++|.+++..+..+.. .                                                          
T Consensus       152 ~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~  231 (570)
T 2z63_A          152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR  231 (570)
T ss_dssp             CEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEE
T ss_pred             CEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceee
Confidence            99999988876432221111 1                                                          


Q ss_pred             ---------------------------------------------------ccchhhcccccccccccccc---------
Q 045837          196 ---------------------------------------------------KLDAIFLNNNRFSSWIPETI---------  215 (527)
Q Consensus       196 ---------------------------------------------------~L~~L~L~~n~l~~~~~~~~---------  215 (527)
                                                                         +|++|++++|.+.+ ++..+         
T Consensus       232 l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~  310 (570)
T 2z63_A          232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLE  310 (570)
T ss_dssp             EEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEE
T ss_pred             eccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccCCccEEe
Confidence                                                               12222222222221 00000         


Q ss_pred             ----------------------------------CCCCcceEeccCCcCCccC--CCC----------------------
Q 045837          216 ----------------------------------GESTVSVVTFAHNNFSGCV--PRS----------------------  237 (527)
Q Consensus       216 ----------------------------------~~~~L~~L~L~~n~l~~~~--~~~----------------------  237 (527)
                                                        ...+|++|++++|.+.+..  +..                      
T Consensus       311 l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  390 (570)
T 2z63_A          311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS  390 (570)
T ss_dssp             EESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE
T ss_pred             eccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc
Confidence                                              1122444444444433211  111                      


Q ss_pred             -CCCCCCCcEEEcccCCCCCCCh-hhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCC-CcchhhhhCCC
Q 045837          238 -IGNMPNVNEIILSNNDLMGCLP-SEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLT-GYVSEQICKLP  314 (527)
Q Consensus       238 -l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~  314 (527)
                       +..+.+|++|++++|.+.+..+ ..+.++++|++|+|++|.+++..+..|.++.+|++|+|++|.++ +.++..+..++
T Consensus       391 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~  470 (570)
T 2z63_A          391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR  470 (570)
T ss_dssp             EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc
Confidence             3444555555555555554333 34666777777777777777667777777788888888888776 45667778888


Q ss_pred             CCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCCCCC----CcccccccCCCCCCC
Q 045837          315 NINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWA----TTCSPVVSNPVDCSK  374 (527)
Q Consensus       315 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~----~~~~~~~~np~~C~~  374 (527)
                      +|++|++++|++++..+..|..+.+|++|++++|.|++.+...+.    -....+.+|++.|+.
T Consensus       471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  534 (570)
T 2z63_A          471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  534 (570)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence            888888888888887777888888888888888888877644322    234456788888763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=1.1e-27  Score=256.91  Aligned_cols=257  Identities=18%  Similarity=0.155  Sum_probs=156.5

Q ss_pred             CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCccc-CCcccccCCcc
Q 045837           96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGS-FPNVCLSWTSL  174 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L  174 (527)
                      +..+++|++|+|++|.+++..++.|.++++|++|+|++|+|+. ++..  .+.+|++|+|++|++++. ++..|.++.+|
T Consensus        72 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L  148 (562)
T 3a79_B           72 ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKL  148 (562)
T ss_dssp             TTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTC
T ss_pred             hccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcc
Confidence            5667777777777777777666777777777777777777773 3333  677777777777777753 34667777777


Q ss_pred             cEEecccCCCCCCcchhhhccccchhhcccccc--ccccccccCC-----------------------------------
Q 045837          175 RYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRF--SSWIPETIGE-----------------------------------  217 (527)
Q Consensus       175 ~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l--~~~~~~~~~~-----------------------------------  217 (527)
                      ++|+|++|.+++.....+...+|++|++++|.+  ++..+..+..                                   
T Consensus       149 ~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l  228 (562)
T 3a79_B          149 TFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI  228 (562)
T ss_dssp             CEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEE
T ss_pred             cEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecc
Confidence            888887777764222222222447778877777  3333222211                                   


Q ss_pred             -----------------------------------------------CCcceEeccCCcCCccCCCCC------------
Q 045837          218 -----------------------------------------------STVSVVTFAHNNFSGCVPRSI------------  238 (527)
Q Consensus       218 -----------------------------------------------~~L~~L~L~~n~l~~~~~~~l------------  238 (527)
                                                                     .+|++|++++|.+.+.++..+            
T Consensus       229 ~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~  308 (562)
T 3a79_B          229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLM  308 (562)
T ss_dssp             ECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEE
T ss_pred             cccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchhee
Confidence                                                           156677777777776555544            


Q ss_pred             -----------------------------------------CCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCc
Q 045837          239 -----------------------------------------GNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNS  277 (527)
Q Consensus       239 -----------------------------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~  277 (527)
                                                               ..+.+|++|++++|.+++.++..++++.+|++|+|++|+
T Consensus       309 ~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  388 (562)
T 3a79_B          309 IEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG  388 (562)
T ss_dssp             EEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC
T ss_pred             hhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC
Confidence                                                     444556666666666665555556666666666666666


Q ss_pred             ccc--cCCcccCCCCCCcEEeccCCCCCCcch-hhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCC
Q 045837          278 FYG--SVPQSFSSLESIHRLVLSYNQLTGYVS-EQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRP  354 (527)
Q Consensus       278 l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  354 (527)
                      +++  .++..+..+.+|++|+|++|++++.++ ..+..+.+|++|++++|++++..+..+.  .+|+.|++++|.|+.++
T Consensus       389 l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip  466 (562)
T 3a79_B          389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIP  466 (562)
T ss_dssp             CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCC
T ss_pred             cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccC
Confidence            653  222345556666666666666655222 3355556666666666666554433332  46667777777766655


Q ss_pred             CCC
Q 045837          355 SQK  357 (527)
Q Consensus       355 ~~~  357 (527)
                      ...
T Consensus       467 ~~~  469 (562)
T 3a79_B          467 KDV  469 (562)
T ss_dssp             TTT
T ss_pred             hhh
Confidence            443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=1e-27  Score=256.48  Aligned_cols=111  Identities=22%  Similarity=0.271  Sum_probs=74.4

Q ss_pred             CcEEEcccCCCCCCChhhc-cCCCCCCEEEccCCcccccCC---cccCCCCCCcEEeccCCCCCCcch--hhhhCCCCCc
Q 045837          244 VNEIILSNNDLMGCLPSEI-GWLKKLTVFDASSNSFYGSVP---QSFSSLESIHRLVLSYNQLTGYVS--EQICKLPNIN  317 (527)
Q Consensus       244 L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~~--~~l~~l~~L~  317 (527)
                      |++|++++|.+. .++..+ ..+++|++|+|++|++++.++   ..++.+.+|++|+|++|+|++...  ..+..+++|+
T Consensus       312 L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~  390 (549)
T 2z81_A          312 VKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT  390 (549)
T ss_dssp             CCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCC
T ss_pred             ceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCC
Confidence            333333444333 233333 357778888888888876553   236677788888888888876532  4577888888


Q ss_pred             EEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCC
Q 045837          318 NFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQ  356 (527)
Q Consensus       318 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  356 (527)
                      +|++++|+++++ +..+..+.+|++|++++|.|+.++..
T Consensus       391 ~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N~l~~l~~~  428 (549)
T 2z81_A          391 SLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTC  428 (549)
T ss_dssp             EEECTTCCCCCC-CSCCCCCTTCCEEECTTSCCSCCCTT
T ss_pred             EEECCCCCCccC-ChhhcccccccEEECCCCCcccccch
Confidence            888888888754 55667777888888888887765543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=2.3e-27  Score=247.68  Aligned_cols=212  Identities=16%  Similarity=0.120  Sum_probs=178.4

Q ss_pred             CCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcc
Q 045837           95 DNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSL  174 (527)
Q Consensus        95 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  174 (527)
                      .+.++++|+.|+|++|.+.++.+..|.++.+|++|+|++|+|+++....|.++.+|++|+|++|+++......|.++.+|
T Consensus        94 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  173 (452)
T 3zyi_A           94 TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL  173 (452)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred             HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc
Confidence            46789999999999999999888899999999999999999998888889999999999999999997777789999999


Q ss_pred             cEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCC
Q 045837          175 RYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDL  254 (527)
Q Consensus       175 ~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l  254 (527)
                      ++|+|++|+..+.++...+.                     +..+|++|+|++|++.+.  ..+..+.+|++|+|++|.+
T Consensus       174 ~~L~l~~~~~l~~i~~~~~~---------------------~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          174 MRLDLGELKKLEYISEGAFE---------------------GLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             CEEECCCCTTCCEECTTTTT---------------------TCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCC
T ss_pred             cEEeCCCCCCccccChhhcc---------------------CCCCCCEEECCCCccccc--ccccccccccEEECcCCcC
Confidence            99999996544344432211                     224577777777777643  3477888899999999999


Q ss_pred             CCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCC
Q 045837          255 MGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGL  329 (527)
Q Consensus       255 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  329 (527)
                      ++..+..|.++.+|++|+|++|++++..+..|.++.+|++|+|++|+|++...+.+..+.+|++|+|++|.+...
T Consensus       231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD  305 (452)
T ss_dssp             SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred             cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence            888888889999999999999999888888888899999999999999888777888889999999999987653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=3.7e-27  Score=261.70  Aligned_cols=267  Identities=19%  Similarity=0.253  Sum_probs=155.9

Q ss_pred             CCCcceEEEEEcCCCC-cCC-CCccccCCCC-------CCCEEEccCCcccccccc--cccCCCCCcEEEeecCcCcccC
Q 045837           96 NSNITVVAGIDLNGND-IAG-YFPAELGWLS-------DLALFHVNSNRFCGIIPE--SLSNWKLIYEFDVSNNRLVGSF  164 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~-l~~-~~~~~l~~l~-------~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~  164 (527)
                      +.++++|+.|+|++|+ +++ .++..++++.       +|++|+|++|+|. .++.  .|.++.+|++|+|++|+++ .+
T Consensus       511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~l  588 (876)
T 4ecn_A          511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HL  588 (876)
T ss_dssp             GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BC
T ss_pred             HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cc
Confidence            3445566666666665 555 4444333332       5555555555555 4444  5555555555555555555 44


Q ss_pred             CcccccCCcccEEecccCCCCCCcchhhhc-cc-cchhhccccccccccccccCC-------------------------
Q 045837          165 PNVCLSWTSLRYLDLRYNNFEGEVPRELFK-MK-LDAIFLNNNRFSSWIPETIGE-------------------------  217 (527)
Q Consensus       165 ~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~-~~-L~~L~L~~n~l~~~~~~~~~~-------------------------  217 (527)
                      + .|..+.+|++|+|++|.++ .++..+.. .+ |++|+|++|.++ .++..+..                         
T Consensus       589 p-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~  665 (876)
T 4ecn_A          589 E-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC  665 (876)
T ss_dssp             C-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS
T ss_pred             h-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchh
Confidence            4 4555555555555555555 44444433 23 555555555544 22333222                         


Q ss_pred             -------CCcceEeccCCcCCccCCCC-CCCCCCCcEEEcccCCCCCCChhhccCC--------CCCCEEEccCCccccc
Q 045837          218 -------STVSVVTFAHNNFSGCVPRS-IGNMPNVNEIILSNNDLMGCLPSEIGWL--------KKLTVFDASSNSFYGS  281 (527)
Q Consensus       218 -------~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~l--------~~L~~L~Ls~n~l~~~  281 (527)
                             .+|++|+|++|.+.. ++.. +..+.+|++|+|++|.++ .++..+...        ++|++|+|++|+++ .
T Consensus       666 ~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~  742 (876)
T 4ecn_A          666 SMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-S  742 (876)
T ss_dssp             CTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-C
T ss_pred             hhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-c
Confidence                   234455555555542 2222 235566777777777776 444433222        27777888887777 5


Q ss_pred             CCcccC--CCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecC------cccCCCCCCCCCCCCCCceecCCCCCCCCC
Q 045837          282 VPQSFS--SLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSY------NYFQGLGNECIPGSKEGGVFDDTSNCLAQR  353 (527)
Q Consensus       282 ~p~~~~--~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  353 (527)
                      ++..+.  .+.+|+.|+|++|+|++ ++..+.++.+|++|+|++      |++.+.++..+.++.+|+.|+|++|.|..+
T Consensus       743 lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~I  821 (876)
T 4ecn_A          743 LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV  821 (876)
T ss_dssp             CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC
T ss_pred             chHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCcc
Confidence            666665  77888888888888876 566777888888888865      667777777788888888888888888766


Q ss_pred             CCCCCCC-cccccccCCCC
Q 045837          354 PSQKWAT-TCSPVVSNPVD  371 (527)
Q Consensus       354 ~~~~~~~-~~~~~~~np~~  371 (527)
                      +...... ....+.+|++.
T Consensus       822 p~~l~~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          822 DEKLTPQLYILDIADNPNI  840 (876)
T ss_dssp             CSCCCSSSCEEECCSCTTC
T ss_pred             CHhhcCCCCEEECCCCCCC
Confidence            6554321 12234455543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=4.4e-27  Score=251.52  Aligned_cols=277  Identities=19%  Similarity=0.202  Sum_probs=183.5

Q ss_pred             CCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCccccc-ccccccCCCCCcEEEeecCcCcccC-CcccccCC
Q 045837           95 DNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGI-IPESLSNWKLIYEFDVSNNRLVGSF-PNVCLSWT  172 (527)
Q Consensus        95 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~  172 (527)
                      .+..+++|++|+|++|.+.+..+..|+++++|++|+|++|++.+. .+..|+++.+|++|++++|.+.+.+ ...|.++.
T Consensus        69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~  148 (549)
T 2z81_A           69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT  148 (549)
T ss_dssp             TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred             hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence            366778888888888888887777788888888888888888763 4567888888888888888743344 35788888


Q ss_pred             cccEEecccCCCCCCcchhhh-------------------------ccccchhhcccccccccc----------------
Q 045837          173 SLRYLDLRYNNFEGEVPRELF-------------------------KMKLDAIFLNNNRFSSWI----------------  211 (527)
Q Consensus       173 ~L~~L~Ls~n~i~~~~p~~~~-------------------------~~~L~~L~L~~n~l~~~~----------------  211 (527)
                      +|++|++++|.+++.++..+.                         ..+|++|++++|++++..                
T Consensus       149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L  228 (549)
T 2z81_A          149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL  228 (549)
T ss_dssp             EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred             ccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence            999999999988765544332                         135666777777665521                


Q ss_pred             --------------------------------------------------------------------------------
Q 045837          212 --------------------------------------------------------------------------------  211 (527)
Q Consensus       212 --------------------------------------------------------------------------------  211 (527)
                                                                                                      
T Consensus       229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~  308 (549)
T 2z81_A          229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL  308 (549)
T ss_dssp             EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred             eccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhh
Confidence                                                                                            


Q ss_pred             -----------------cccc--CCCCcceEeccCCcCCccC---CCCCCCCCCCcEEEcccCCCCCCCh--hhccCCCC
Q 045837          212 -----------------PETI--GESTVSVVTFAHNNFSGCV---PRSIGNMPNVNEIILSNNDLMGCLP--SEIGWLKK  267 (527)
Q Consensus       212 -----------------~~~~--~~~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~  267 (527)
                                       +..+  ...+|++|++++|++.+.+   ...++.+.+|++|+|++|.+++...  ..+..+++
T Consensus       309 ~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~  388 (549)
T 2z81_A          309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN  388 (549)
T ss_dssp             STTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT
T ss_pred             cccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCC
Confidence                             0000  1234566666666666543   2235566677777777777763321  34677777


Q ss_pred             CCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchh-----------------hhhCCCCCcEEEecCcccCCCC
Q 045837          268 LTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSE-----------------QICKLPNINNFTFSYNYFQGLG  330 (527)
Q Consensus       268 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-----------------~l~~l~~L~~L~Ls~N~l~~~~  330 (527)
                      |++|||++|+++ .++..+..+.+|++|+|++|+|++....                 .+.++++|++|+|++|+|+.+ 
T Consensus       389 L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~i-  466 (549)
T 2z81_A          389 LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTL-  466 (549)
T ss_dssp             CCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSC-
T ss_pred             CCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcC-
Confidence            888888888777 5666666667777777777766532111                 112566777777777777644 


Q ss_pred             CCCCCCCCCCceecCCCCCCCCCCCCCC----CCcccccccCCCCCCC
Q 045837          331 NECIPGSKEGGVFDDTSNCLAQRPSQKW----ATTCSPVVSNPVDCSK  374 (527)
Q Consensus       331 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~----~~~~~~~~~np~~C~~  374 (527)
                      +. ...+.+|++|++++|.|++.+....    .-....+.+|+|.|+.
T Consensus       467 p~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  513 (549)
T 2z81_A          467 PD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  513 (549)
T ss_dssp             CC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred             CC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence            32 3456778888888888887664422    2234457789998873

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=4.2e-29  Score=247.77  Aligned_cols=246  Identities=14%  Similarity=0.106  Sum_probs=201.9

Q ss_pred             CcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCccc-cccccccc-------CCCCCcEEEeecCcCcccCCccc-
Q 045837           98 NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFC-GIIPESLS-------NWKLIYEFDVSNNRLVGSFPNVC-  168 (527)
Q Consensus        98 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~-~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~~~~~-  168 (527)
                      ...+|+.|++++|.+  .++..+...  |++|+|++|++. ..++..+.       ++.+|++|+|++|++++.++..+ 
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            567899999999999  566666544  899999999994 44555554       78999999999999998888876 


Q ss_pred             -ccCCcccEEecccCCCCCCcchhhhc------cccchhhccccccccccccccCC-CCcceEeccCCcCCccC--CCC-
Q 045837          169 -LSWTSLRYLDLRYNNFEGEVPRELFK------MKLDAIFLNNNRFSSWIPETIGE-STVSVVTFAHNNFSGCV--PRS-  237 (527)
Q Consensus       169 -~~l~~L~~L~Ls~n~i~~~~p~~~~~------~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~--~~~-  237 (527)
                       ..+.+|++|+|++|.+++. +..+..      .+|++|+|++|++.+..+..++. .+|++|++++|++.+.+  +.. 
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence             8899999999999999965 554443      68999999999999988676654 56999999999987642  222 


Q ss_pred             -CCCCCCCcEEEcccCCCCCC--C-hhhccCCCCCCEEEccCCcccccCC-cccCCCCCCcEEeccCCCCCCcchhhhhC
Q 045837          238 -IGNMPNVNEIILSNNDLMGC--L-PSEIGWLKKLTVFDASSNSFYGSVP-QSFSSLESIHRLVLSYNQLTGYVSEQICK  312 (527)
Q Consensus       238 -l~~l~~L~~L~Ls~N~l~~~--~-p~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  312 (527)
                       +..+.+|++|+|++|.+++.  + ...+.++++|++|+|++|++++..+ ..+..+.+|++|+|++|+|+ .++..+. 
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-  273 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-  273 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence             38899999999999999832  2 2345678999999999999998764 45667899999999999998 5566555 


Q ss_pred             CCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCC
Q 045837          313 LPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQR  353 (527)
Q Consensus       313 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  353 (527)
                       .+|++|+|++|+|++. +. +..+.+|++|++++|.|++.
T Consensus       274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence             7899999999999998 44 88999999999999999753

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.95  E-value=1.5e-26  Score=232.68  Aligned_cols=244  Identities=19%  Similarity=0.276  Sum_probs=151.8

Q ss_pred             CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCccc
Q 045837           96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLR  175 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  175 (527)
                      +..+++|++|+|++|.+.+.  ..+.++++|++|++++|++.+...  +.++.+|++|++++|.....+ ..+..+.+|+
T Consensus        84 ~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~  158 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLN  158 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCC
T ss_pred             hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCc
Confidence            45677888888888887764  357788888888888888775432  777778888888777554333 2366677777


Q ss_pred             EEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCC
Q 045837          176 YLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLM  255 (527)
Q Consensus       176 ~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  255 (527)
                      +|++++|.+. .+.......+|++|++++|.+.+... .....+|++|++++|.+.+...  +..+.+|++|++++|.++
T Consensus       159 ~L~l~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~  234 (347)
T 4fmz_A          159 YLTVTESKVK-DVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT  234 (347)
T ss_dssp             EEECCSSCCC-CCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             EEEecCCCcC-CchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC
Confidence            7777777776 33332222567777777777665433 2233456666666666664432  555666666666666665


Q ss_pred             CCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCC
Q 045837          256 GCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIP  335 (527)
Q Consensus       256 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  335 (527)
                      +. +. +..+.+|++|+|++|.+++.  ..+..+.+|++|+|++|++++.  ..+..+++|++|++++|++++..+..+.
T Consensus       235 ~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~  308 (347)
T 4fmz_A          235 DL-SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIG  308 (347)
T ss_dssp             CC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHH
T ss_pred             CC-cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhh
Confidence            32 22 55666666666666666532  3455566666666666666554  3455666666666666666655555555


Q ss_pred             CCCCCceecCCCCCCCCCC
Q 045837          336 GSKEGGVFDDTSNCLAQRP  354 (527)
Q Consensus       336 ~l~~L~~L~l~~N~l~~~~  354 (527)
                      ++.+|+.|++++|.+++..
T Consensus       309 ~l~~L~~L~L~~n~l~~~~  327 (347)
T 4fmz_A          309 GLTNLTTLFLSQNHITDIR  327 (347)
T ss_dssp             TCTTCSEEECCSSSCCCCG
T ss_pred             ccccCCEEEccCCcccccc
Confidence            5666666666666665543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=8.8e-27  Score=242.33  Aligned_cols=211  Identities=19%  Similarity=0.183  Sum_probs=168.1

Q ss_pred             CCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcc
Q 045837           95 DNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSL  174 (527)
Q Consensus        95 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  174 (527)
                      .+.++++|+.|+|++|.+.++.+..|.++.+|++|+|++|+|+++....|.++.+|++|+|++|.+.......|.++.+|
T Consensus        83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L  162 (440)
T 3zyj_A           83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL  162 (440)
T ss_dssp             TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred             HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCccc
Confidence            47789999999999999999888899999999999999999998877789999999999999999997777789999999


Q ss_pred             cEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCC
Q 045837          175 RYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDL  254 (527)
Q Consensus       175 ~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l  254 (527)
                      ++|+|++|+..+.++...+.                     +..+|++|+|++|++... + .+..+.+|++|+|++|.+
T Consensus       163 ~~L~l~~~~~l~~i~~~~~~---------------------~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l  219 (440)
T 3zyj_A          163 RRLDLGELKRLSYISEGAFE---------------------GLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHL  219 (440)
T ss_dssp             CEEECCCCTTCCEECTTTTT---------------------TCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCC
T ss_pred             CEeCCCCCCCcceeCcchhh---------------------cccccCeecCCCCcCccc-c-ccCCCcccCEEECCCCcc
Confidence            99999996544344432221                     123466666666666532 2 466777788888888888


Q ss_pred             CCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCC
Q 045837          255 MGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQG  328 (527)
Q Consensus       255 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  328 (527)
                      ++..+..|.++.+|++|+|++|++++..+..|.++.+|++|+|++|+|++.....+..+.+|++|+|++|.+..
T Consensus       220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            77667777788888888888888877777777778888888888888887777777778888888888887754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=4.5e-27  Score=230.02  Aligned_cols=223  Identities=14%  Similarity=0.166  Sum_probs=141.1

Q ss_pred             EEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccC
Q 045837          103 AGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYN  182 (527)
Q Consensus       103 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  182 (527)
                      +.++.+++.+..+ +..  ...+|++|+|++|+|.+.....|.++.+|++|+|++|.+++..+..|.++.+|++|+|++|
T Consensus        14 ~~~~c~~~~l~~i-p~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAV-PVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSC-CTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccC-CcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            4556666666543 322  2356777777777777666666777777777777777776665666677777777777777


Q ss_pred             C-CCCCcchhhhc-cccchhhccccccccccccccC-CCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCCh
Q 045837          183 N-FEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIG-ESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLP  259 (527)
Q Consensus       183 ~-i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  259 (527)
                      . ++...+..+.. .+|++|++++|.+++..+..+. ..+|++|++++|++.+.....|+.+.+|++|+|++|.+++...
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            5 54222333322 3555555555555554444333 2456666676666665555556667777777777777765444


Q ss_pred             hhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCC
Q 045837          260 SEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQG  328 (527)
Q Consensus       260 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  328 (527)
                      ..|..+.+|++|+|++|.+++..+..|.++.+|++|+|++|+|++.....+..+++|++|++++|.+.+
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            456667777777777777766666667777777777777777776666666777777777777776654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=2e-27  Score=232.54  Aligned_cols=237  Identities=17%  Similarity=0.195  Sum_probs=200.7

Q ss_pred             CcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCc-CcccCCcccccCCcccE
Q 045837           98 NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNR-LVGSFPNVCLSWTSLRY  176 (527)
Q Consensus        98 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~  176 (527)
                      ...+|++|+|++|.+.+.....|.++++|++|+|++|+|.+..+..|.++.+|++|+|++|. +....+..|..+.+|++
T Consensus        30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~  109 (285)
T 1ozn_A           30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (285)
T ss_dssp             CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence            45689999999999999877889999999999999999998888899999999999999997 87666888999999999


Q ss_pred             EecccCCCCCCcchhhhc-cccchhhccccccccccccccC-CCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCC
Q 045837          177 LDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIG-ESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDL  254 (527)
Q Consensus       177 L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l  254 (527)
                      |+|++|.+++..+..+.. .+|++|++++|++++.....++ ..+|++|++++|++.+.....|..+.+|++|+|++|.+
T Consensus       110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence            999999999655555554 7999999999999987766664 46799999999999987777799999999999999999


Q ss_pred             CCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchh-hhhCCCCCcEEEecCcccCCCCCCC
Q 045837          255 MGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSE-QICKLPNINNFTFSYNYFQGLGNEC  333 (527)
Q Consensus       255 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~~~~  333 (527)
                      ++..+..|..+.+|++|+|++|++++..+..+..+.+|++|+|++|.+...... ++.  ..|+.++.+.|.+.+..+..
T Consensus       190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~--~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW--AWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHH--HHHHHCCSEECCCBEEESGG
T ss_pred             cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHH--HHHHhcccccCccccCCchH
Confidence            988899999999999999999999977667799999999999999999864321 111  12444556677777666655


Q ss_pred             CCC
Q 045837          334 IPG  336 (527)
Q Consensus       334 ~~~  336 (527)
                      +.+
T Consensus       268 l~g  270 (285)
T 1ozn_A          268 LAG  270 (285)
T ss_dssp             GTT
T ss_pred             hCC
Confidence            443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.95  E-value=1.4e-26  Score=254.21  Aligned_cols=254  Identities=16%  Similarity=0.190  Sum_probs=186.1

Q ss_pred             CCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccE
Q 045837           97 SNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRY  176 (527)
Q Consensus        97 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  176 (527)
                      .++++|++|+|++|.+.++....|+++++|++|+|++|++.++.+..|+++.+|++|+|++|.+++..+..+.++.+|++
T Consensus        70 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  149 (680)
T 1ziw_A           70 QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE  149 (680)
T ss_dssp             HHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCE
T ss_pred             hcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCE
Confidence            45677888888888887765556888888888888888888777777888888888888888888777777778888888


Q ss_pred             EecccCCCCCCcchhhhc---cccchhhccccccccccccccCC----------------------------CCcceEec
Q 045837          177 LDLRYNNFEGEVPRELFK---MKLDAIFLNNNRFSSWIPETIGE----------------------------STVSVVTF  225 (527)
Q Consensus       177 L~Ls~n~i~~~~p~~~~~---~~L~~L~L~~n~l~~~~~~~~~~----------------------------~~L~~L~L  225 (527)
                      |+|++|.+++..+..+..   .+|++|++++|.+++..+..+..                            .+|++|++
T Consensus       150 L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L  229 (680)
T 1ziw_A          150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL  229 (680)
T ss_dssp             EECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEEC
T ss_pred             EEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEc
Confidence            888888887554443322   57888888888877665543321                            34677777


Q ss_pred             cCCcCCccCCCCCCCCCC--CcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCC
Q 045837          226 AHNNFSGCVPRSIGNMPN--VNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLT  303 (527)
Q Consensus       226 ~~n~l~~~~~~~l~~l~~--L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  303 (527)
                      ++|.+.+..+..|.++..  |++|+|++|.+++..+..|+.+.+|++|+|++|++++..+..|.++.+|++|+|++|...
T Consensus       230 ~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~  309 (680)
T 1ziw_A          230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK  309 (680)
T ss_dssp             TTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCC
T ss_pred             cCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhh
Confidence            777777777777776644  888888888887766777778888888888888887777777777777777777766544


Q ss_pred             Cc-----ch----hhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCC
Q 045837          304 GY-----VS----EQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCL  350 (527)
Q Consensus       304 ~~-----~~----~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l  350 (527)
                      +.     ++    ..+..+.+|++|++++|++++..+..|.++.+|++|++++|.+
T Consensus       310 ~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~  365 (680)
T 1ziw_A          310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT  365 (680)
T ss_dssp             C------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBS
T ss_pred             cccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCch
Confidence            31     11    2566677777777777777777666677777777777766653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.94  E-value=3.6e-27  Score=255.33  Aligned_cols=252  Identities=17%  Similarity=0.117  Sum_probs=211.6

Q ss_pred             CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCccc--CCcccccCCc
Q 045837           96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGS--FPNVCLSWTS  173 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~  173 (527)
                      +..+.+|++|+|++|.+ +.++ .+ .+++|++|++++|++.+.+  .+..+++|++|++++|++++.  .+..+..+.+
T Consensus       303 l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~  377 (606)
T 3vq2_A          303 VPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS  377 (606)
T ss_dssp             CCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSC
T ss_pred             ccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCc
Confidence            45566777788888777 4455 44 7778888888888555443  567888899999999988755  3667788899


Q ss_pred             ccEEecccCCCCCCcchhhhc-cccchhhccccccccccc-ccc-CCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcc
Q 045837          174 LRYLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIP-ETI-GESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILS  250 (527)
Q Consensus       174 L~~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~-~~~-~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  250 (527)
                      |++|+|++|.++ .++..+.. .+|++|++++|++.+..+ ..+ ...+|++|++++|.+.+..+..|.++.+|++|+++
T Consensus       378 L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  456 (606)
T 3vq2_A          378 LRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA  456 (606)
T ss_dssp             CCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred             ccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECC
Confidence            999999999987 45554444 689999999999998766 344 34679999999999999889999999999999999


Q ss_pred             cCCCCC-CChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCC
Q 045837          251 NNDLMG-CLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGL  329 (527)
Q Consensus       251 ~N~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  329 (527)
                      +|.+++ .++..++.+++|++|+|++|++++..+..|.++.+|++|+|++|++++..+..+.++++|++|++++|+|+.+
T Consensus       457 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  536 (606)
T 3vq2_A          457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS  536 (606)
T ss_dssp             TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCE
T ss_pred             CCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCccc
Confidence            999987 3788899999999999999999998889999999999999999999999999999999999999999999965


Q ss_pred             CCCCCCCCC-CCceecCCCCCCCCCC
Q 045837          330 GNECIPGSK-EGGVFDDTSNCLAQRP  354 (527)
Q Consensus       330 ~~~~~~~l~-~L~~L~l~~N~l~~~~  354 (527)
                       +..+..+. +|++|++++|.+....
T Consensus       537 -p~~~~~l~~~L~~l~l~~N~~~c~c  561 (606)
T 3vq2_A          537 -KGILQHFPKSLAFFNLTNNSVACIC  561 (606)
T ss_dssp             -ESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred             -CHhHhhhcccCcEEEccCCCcccCC
Confidence             44477776 6999999999998643

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=4.9e-26  Score=220.85  Aligned_cols=219  Identities=15%  Similarity=0.241  Sum_probs=160.7

Q ss_pred             CCCccccceeeCCCCCCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCc
Q 045837           80 TDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNR  159 (527)
Q Consensus        80 ~~~c~~~gv~c~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~  159 (527)
                      .+.|.|.|+.|.-.      ..++.+++++++++. ++..+.  .+|++|+|++|+|.+.....|.++.+|++|+|++|+
T Consensus         2 ~~~C~~~~~~C~c~------~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   72 (270)
T 2o6q_A            2 EALCKKDGGVCSCN------NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK   72 (270)
T ss_dssp             CCCBGGGTCSBEEE------TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC
T ss_pred             CccCCCCCCCCEeC------CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc
Confidence            57899999998421      245689999999986 454443  679999999999998777789999999999999999


Q ss_pred             CcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCC
Q 045837          160 LVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIG  239 (527)
Q Consensus       160 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  239 (527)
                      ++......|.++.+|++|+|++|.++ .++...+.                     ...+|++|++++|++.+.....|.
T Consensus        73 l~~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~---------------------~l~~L~~L~l~~n~l~~~~~~~~~  130 (270)
T 2o6q_A           73 LQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFD---------------------QLVNLAELRLDRNQLKSLPPRVFD  130 (270)
T ss_dssp             CSCCCTTTTSSCTTCCEEECCSSCCC-CCCTTTTT---------------------TCSSCCEEECCSSCCCCCCTTTTT
T ss_pred             cCeeChhhhcCCCCCCEEECCCCcCC-cCCHhHcc---------------------cccCCCEEECCCCccCeeCHHHhC
Confidence            98666666788899999999999887 33221110                     123466666666666666666677


Q ss_pred             CCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEE
Q 045837          240 NMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNF  319 (527)
Q Consensus       240 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  319 (527)
                      .+.+|++|+|++|.+++.....|..+.+|++|+|++|++++..+..|..+.+|++|+|++|+|++.....+..+.+|++|
T Consensus       131 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  210 (270)
T 2o6q_A          131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML  210 (270)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence            77777777777777775555556777777777777777776555567777777777777777776666667777777777


Q ss_pred             EecCcccCCC
Q 045837          320 TFSYNYFQGL  329 (527)
Q Consensus       320 ~Ls~N~l~~~  329 (527)
                      +|++|.+...
T Consensus       211 ~l~~N~~~c~  220 (270)
T 2o6q_A          211 QLQENPWDCT  220 (270)
T ss_dssp             ECCSSCBCCS
T ss_pred             EecCCCeeCC
Confidence            7777776543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=2e-27  Score=236.21  Aligned_cols=238  Identities=16%  Similarity=0.122  Sum_probs=129.9

Q ss_pred             EEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEeccc
Q 045837          102 VAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRY  181 (527)
Q Consensus       102 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  181 (527)
                      ++.++++++.+...+...+..+++|++|+|++|+|.+..+..|.++.+|++|+|++|++++..+  +..+.+|++|+|++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            4444444444443333333444455555555555555444455555555555555555543322  44555555555555


Q ss_pred             CCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhh
Q 045837          182 NNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSE  261 (527)
Q Consensus       182 n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~  261 (527)
                      |.++ .++   ...+|++|++++|++++.....  ..+|++|++++|++.+..+..++.+.+|++|+|++|.+++..+..
T Consensus        90 n~l~-~l~---~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  163 (317)
T 3o53_A           90 NYVQ-ELL---VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE  163 (317)
T ss_dssp             SEEE-EEE---ECTTCCEEECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred             Cccc-ccc---CCCCcCEEECCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence            5554 221   1145555555555555443322  234666666666666555555666666666666666666544444


Q ss_pred             c-cCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCC
Q 045837          262 I-GWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEG  340 (527)
Q Consensus       262 ~-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  340 (527)
                      + ..+.+|++|+|++|++++.  .....+.+|++|+|++|+|++... .+..+.+|++|+|++|+++++ +..+..+.+|
T Consensus       164 ~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L  239 (317)
T 3o53_A          164 LAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQNL  239 (317)
T ss_dssp             GGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEE-CTTCCCCTTC
T ss_pred             HhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccch-hhHhhcCCCC
Confidence            4 3566666666666666543  122335666666666666665433 356666666666666666643 3445666666


Q ss_pred             ceecCCCCCCC
Q 045837          341 GVFDDTSNCLA  351 (527)
Q Consensus       341 ~~L~l~~N~l~  351 (527)
                      +.|++++|.+.
T Consensus       240 ~~L~l~~N~~~  250 (317)
T 3o53_A          240 EHFDLRGNGFH  250 (317)
T ss_dssp             CEEECTTCCCB
T ss_pred             CEEEccCCCcc
Confidence            66666666665

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=4.1e-26  Score=229.59  Aligned_cols=239  Identities=19%  Similarity=0.261  Sum_probs=103.3

Q ss_pred             CCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccE
Q 045837           97 SNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRY  176 (527)
Q Consensus        97 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  176 (527)
                      ..+++|++|+|++|.+.+..  .+..+++|++|++++|.....+. .+.++.+|++|++++|.+.+...  +..+.+|++
T Consensus       107 ~~l~~L~~L~l~~n~i~~~~--~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~  181 (347)
T 4fmz_A          107 QNLTNLRELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS  181 (347)
T ss_dssp             TTCTTCSEEECTTSCCCCCG--GGTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred             cCCCcCCEEECcCCcccCch--hhccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCE
Confidence            34444444455444444321  14444444455554443332222 24444444455554444442211  344444444


Q ss_pred             EecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCC
Q 045837          177 LDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMG  256 (527)
Q Consensus       177 L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  256 (527)
                      |++++|.+. .+.......+|++|++++|.+.+... .....+|++|++++|++.+...  +..+.+|++|++++|.+++
T Consensus       182 L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~  257 (347)
T 4fmz_A          182 LSLNYNQIE-DISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD  257 (347)
T ss_dssp             EECTTSCCC-CCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             EEccCCccc-ccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC
Confidence            555444444 22221111344444444444444322 1122334444444444443222  4444444455554444442


Q ss_pred             CChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCC
Q 045837          257 CLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPG  336 (527)
Q Consensus       257 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~  336 (527)
                       + ..+..+.+|++|++++|++++.  ..+..+.+|++|+|++|.+++..+..+.++++|++|++++|.+++..+  +..
T Consensus       258 -~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~  331 (347)
T 4fmz_A          258 -I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS  331 (347)
T ss_dssp             -C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGG
T ss_pred             -C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhh
Confidence             1 2344444445555544444432  234444444455555444444444444444444455555444444433  344


Q ss_pred             CCCCceecCCCCCC
Q 045837          337 SKEGGVFDDTSNCL  350 (527)
Q Consensus       337 l~~L~~L~l~~N~l  350 (527)
                      +.+|+.|++++|.|
T Consensus       332 l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          332 LSKMDSADFANQVI  345 (347)
T ss_dssp             CTTCSEESSSCC--
T ss_pred             hhccceeehhhhcc
Confidence            44444444444444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=7.5e-27  Score=235.68  Aligned_cols=265  Identities=15%  Similarity=0.152  Sum_probs=212.8

Q ss_pred             EcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCC
Q 045837          106 DLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFE  185 (527)
Q Consensus       106 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~  185 (527)
                      ++++++++. +|..+.  .+|++|++++|+|++.....|.++.+|++|+|++|++++..+..|.++.+|++|+|++|.++
T Consensus        37 ~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  113 (353)
T 2z80_A           37 KGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS  113 (353)
T ss_dssp             ECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             eCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence            346677765 454443  58999999999999887778999999999999999999887888999999999999999998


Q ss_pred             CCcchh-hhc-cccchhhccccccccccc-cccC-CCCcceEeccCCc-CCccCCCCCCCCCCCcEEEcccCCCCCCChh
Q 045837          186 GEVPRE-LFK-MKLDAIFLNNNRFSSWIP-ETIG-ESTVSVVTFAHNN-FSGCVPRSIGNMPNVNEIILSNNDLMGCLPS  260 (527)
Q Consensus       186 ~~~p~~-~~~-~~L~~L~L~~n~l~~~~~-~~~~-~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~  260 (527)
                       .++.. +.. .+|++|+|++|++++... ..+. ..+|++|++++|. +.+..+..|.++.+|++|++++|.+++..+.
T Consensus       114 -~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  192 (353)
T 2z80_A          114 -NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK  192 (353)
T ss_dssp             -SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred             -cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence             55555 433 699999999999987554 3443 4679999999994 6666677899999999999999999988888


Q ss_pred             hccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhh---hCCCCCcEEEecCcccCCC----CCCC
Q 045837          261 EIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQI---CKLPNINNFTFSYNYFQGL----GNEC  333 (527)
Q Consensus       261 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~l~~L~~L~Ls~N~l~~~----~~~~  333 (527)
                      .+..+++|++|++++|+++......+..+.+|++|+|++|.+++.....+   .....++.+++++|.+.+.    ++..
T Consensus       193 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~  272 (353)
T 2z80_A          193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL  272 (353)
T ss_dssp             TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHH
T ss_pred             HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHH
Confidence            99999999999999999874433345568899999999999987654433   3466788999999988762    3445


Q ss_pred             CCCCCCCceecCCCCCCCCCCCCCCC----CcccccccCCCCCCC
Q 045837          334 IPGSKEGGVFDDTSNCLAQRPSQKWA----TTCSPVVSNPVDCSK  374 (527)
Q Consensus       334 ~~~l~~L~~L~l~~N~l~~~~~~~~~----~~~~~~~~np~~C~~  374 (527)
                      +..+.+|+.|++++|.|+.++...+.    -....+.+|+|.|+.
T Consensus       273 l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          273 LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             HHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             HhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence            77889999999999999988765422    234567899999973

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.94  E-value=5.2e-26  Score=244.18  Aligned_cols=253  Identities=17%  Similarity=0.156  Sum_probs=217.6

Q ss_pred             CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCccc
Q 045837           96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLR  175 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  175 (527)
                      +..+++|+.|++++|.+.+ ++..+..+ +|++|++++|++. .++.  ..+.+|++|++++|.+.+....  ..+.+|+
T Consensus       278 ~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~  350 (570)
T 2z63_A          278 FNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLE  350 (570)
T ss_dssp             TGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCC
T ss_pred             hcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCC
Confidence            4567888999999998875 66777777 8999999999888 3433  5678899999999988765544  6789999


Q ss_pred             EEecccCCCCCCc--chhhhc-cccchhhccccccccccccccCCCCcceEeccCCcCCccCC-CCCCCCCCCcEEEccc
Q 045837          176 YLDLRYNNFEGEV--PRELFK-MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVP-RSIGNMPNVNEIILSN  251 (527)
Q Consensus       176 ~L~Ls~n~i~~~~--p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~  251 (527)
                      +|++++|.+++..  +..+.. .+|++|++++|.+.+.........+|++|++++|.+.+..+ ..+.++.+|++|++++
T Consensus       351 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  430 (570)
T 2z63_A          351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH  430 (570)
T ss_dssp             EEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTT
T ss_pred             EEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcC
Confidence            9999999998443  344444 79999999999998866654455679999999999997765 5688999999999999


Q ss_pred             CCCCCCChhhccCCCCCCEEEccCCccc-ccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCC
Q 045837          252 NDLMGCLPSEIGWLKKLTVFDASSNSFY-GSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLG  330 (527)
Q Consensus       252 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~  330 (527)
                      |.+.+..+..+.++.+|++|+|++|.++ +.++..+..+.+|++|+|++|++++..+..+.++++|++|++++|++++..
T Consensus       431 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  510 (570)
T 2z63_A          431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP  510 (570)
T ss_dssp             SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCC
Confidence            9999888889999999999999999997 578889999999999999999999988999999999999999999999998


Q ss_pred             CCCCCCCCCCceecCCCCCCCCCCC
Q 045837          331 NECIPGSKEGGVFDDTSNCLAQRPS  355 (527)
Q Consensus       331 ~~~~~~l~~L~~L~l~~N~l~~~~~  355 (527)
                      +..|..+.+|+.|++++|.+++...
T Consensus       511 ~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          511 DGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             TTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             HHHhhcccCCcEEEecCCcccCCCc
Confidence            8889999999999999999987543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.94  E-value=2.6e-25  Score=232.92  Aligned_cols=243  Identities=20%  Similarity=0.299  Sum_probs=118.3

Q ss_pred             CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCC----------
Q 045837           96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFP----------  165 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----------  165 (527)
                      +..+.+|++|+|++|.+.+..+  +.++++|++|+|++|++.+...  +.++.+|++|++++|.+.+...          
T Consensus        86 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L  161 (466)
T 1o6v_A           86 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQL  161 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEE
T ss_pred             hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEe
Confidence            3445566666666666655432  5566666666666666554322  5555566666665555542110          


Q ss_pred             ---------cccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCC-----
Q 045837          166 ---------NVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFS-----  231 (527)
Q Consensus       166 ---------~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~-----  231 (527)
                               ..+.++.+|++|++++|.++ .+.......+|++|++++|.+.+..+ .....+|++|++++|++.     
T Consensus       162 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l  239 (466)
T 1o6v_A          162 SFGNQVTDLKPLANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTL  239 (466)
T ss_dssp             EEEESCCCCGGGTTCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGG
T ss_pred             ecCCcccCchhhccCCCCCEEECcCCcCC-CChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhh
Confidence                     11334455555555555554 22221111455555555555544332 111233444444444444     


Q ss_pred             -----------------ccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcE
Q 045837          232 -----------------GCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHR  294 (527)
Q Consensus       232 -----------------~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  294 (527)
                                       +..+  +..+.+|++|++++|.+++..+  +..+.+|++|+|++|++++..+  +..+.+|++
T Consensus       240 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  313 (466)
T 1o6v_A          240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTY  313 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSE
T ss_pred             hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCE
Confidence                             3221  3444444444444444442211  4444555555555555443221  444555555


Q ss_pred             EeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCC
Q 045837          295 LVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRP  354 (527)
Q Consensus       295 L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  354 (527)
                      |+|++|++++..+  +..+++|++|++++|++++.  ..+..+.+|+.|++++|.+++..
T Consensus       314 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~  369 (466)
T 1o6v_A          314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLT  369 (466)
T ss_dssp             EECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCG
T ss_pred             EECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccc
Confidence            5555555554433  44555555555555555554  24555566666666666665443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.93  E-value=3e-25  Score=232.53  Aligned_cols=246  Identities=23%  Similarity=0.308  Sum_probs=176.2

Q ss_pred             CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCccccccc-------------------ccccCCCCCcEEEee
Q 045837           96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIP-------------------ESLSNWKLIYEFDVS  156 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-------------------~~~~~l~~L~~L~Ls  156 (527)
                      +..+.+|++|+|++|.+.+..  .+.++++|++|++++|++.+...                   ..+.++.+|++|+++
T Consensus       108 ~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~  185 (466)
T 1o6v_A          108 LANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS  185 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECC
T ss_pred             hcCCCCCCEEECCCCCCCCCh--HHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECc
Confidence            445666777777777666542  25566666666666655543210                   113444555555555


Q ss_pred             cCcCcccCCccccc----------------------CCcccEEecccCCCCCCcchhhhccccchhhccccccccccccc
Q 045837          157 NNRLVGSFPNVCLS----------------------WTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPET  214 (527)
Q Consensus       157 ~n~l~~~~~~~~~~----------------------l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~  214 (527)
                      +|.+.+.  ..+..                      +.+|++|++++|.++ .+.......+|++|++++|.+.+... .
T Consensus       186 ~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~~~~-~  261 (466)
T 1o6v_A          186 SNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLANNQISNLAP-L  261 (466)
T ss_dssp             SSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCCCGG-G
T ss_pred             CCcCCCC--hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcc-cchhhhcCCCCCEEECCCCccccchh-h
Confidence            5555432  12334                      445555555555554 22221122567777777777776544 3


Q ss_pred             cCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcE
Q 045837          215 IGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHR  294 (527)
Q Consensus       215 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  294 (527)
                      ....+|++|++++|.+.+...  +..+.+|++|+|++|.+++..+  +..+.+|++|+|++|++++..+  +..+.+|++
T Consensus       262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  335 (466)
T 1o6v_A          262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR  335 (466)
T ss_dssp             TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred             hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence            344679999999999997644  8899999999999999996543  7899999999999999997654  788999999


Q ss_pred             EeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCCC
Q 045837          295 LVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQK  357 (527)
Q Consensus       295 L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  357 (527)
                      |++++|++++.  ..+.++++|++|++++|++++..+  +..+.+|+.|++++|.+++.+...
T Consensus       336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p~~~  394 (466)
T 1o6v_A          336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNY  394 (466)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCCBCC
T ss_pred             eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCchhh
Confidence            99999999986  578999999999999999998876  888999999999999999876544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=3.3e-26  Score=240.71  Aligned_cols=218  Identities=19%  Similarity=0.161  Sum_probs=131.2

Q ss_pred             CcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEE
Q 045837           98 NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYL  177 (527)
Q Consensus        98 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  177 (527)
                      .+.+|+.|+|++|.+.+..+..|..+++|++|+|++|.|++..+  |.++.+|++|+|++|.|++.     ....+|++|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----EECTTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----CCCCCcCEE
Confidence            34467777777777766666667777777777777777765543  66667777777777766632     223566666


Q ss_pred             ecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCC
Q 045837          178 DLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC  257 (527)
Q Consensus       178 ~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  257 (527)
                      +|++|.+++...                       ..  ..+|++|+|++|.+.+..+..|+.+.+|++|+|++|.+++.
T Consensus       105 ~L~~N~l~~~~~-----------------------~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (487)
T 3oja_A          105 HAANNNISRVSC-----------------------SR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (487)
T ss_dssp             ECCSSCCCCEEE-----------------------CC--CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE
T ss_pred             ECcCCcCCCCCc-----------------------cc--cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc
Confidence            666666653222                       11  12455666666666655555566666666666666666655


Q ss_pred             Chhhcc-CCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCC
Q 045837          258 LPSEIG-WLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPG  336 (527)
Q Consensus       258 ~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~  336 (527)
                      .+..+. .+.+|++|+|++|.+++..  .+..+.+|++|+|++|.|++..+. +..+.+|++|+|++|.|+++ +..+..
T Consensus       160 ~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~l-p~~l~~  235 (487)
T 3oja_A          160 NFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRF  235 (487)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCC
T ss_pred             ChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCccc-chhhcc
Confidence            555554 5666666666666665441  233456666666666666654333 55666666666666666653 334555


Q ss_pred             CCCCceecCCCCCCC
Q 045837          337 SKEGGVFDDTSNCLA  351 (527)
Q Consensus       337 l~~L~~L~l~~N~l~  351 (527)
                      +.+|+.|++++|.+.
T Consensus       236 l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          236 SQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CTTCCEEECTTCCBC
T ss_pred             CCCCCEEEcCCCCCc
Confidence            666666666666665

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=3.2e-27  Score=234.74  Aligned_cols=238  Identities=19%  Similarity=0.209  Sum_probs=201.6

Q ss_pred             CcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEE
Q 045837           98 NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYL  177 (527)
Q Consensus        98 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  177 (527)
                      .+++|++|+|++|.+.+..+..|.++++|++|+|++|++.+..+  |.++.+|++|+|++|++++.     ..+.+|++|
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L  104 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETL  104 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCEE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCEE
Confidence            45789999999999999888899999999999999999987654  89999999999999999843     345899999


Q ss_pred             ecccCCCCCCcchhhhccccchhhccccccccccccccC-CCCcceEeccCCcCCccCCCCC-CCCCCCcEEEcccCCCC
Q 045837          178 DLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIG-ESTVSVVTFAHNNFSGCVPRSI-GNMPNVNEIILSNNDLM  255 (527)
Q Consensus       178 ~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~N~l~  255 (527)
                      ++++|.+++.....  ..+|++|++++|++++.....++ ..+|++|++++|.+.+.....+ ..+.+|++|+|++|.++
T Consensus       105 ~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          105 HAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             ECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             ECCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence            99999998443322  36899999999999987776665 4679999999999998766666 47899999999999998


Q ss_pred             CCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccC-CCCCCCC
Q 045837          256 GCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQ-GLGNECI  334 (527)
Q Consensus       256 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~~~~~  334 (527)
                      +. + ....+.+|++|+|++|++++. +..+..+.+|++|+|++|+|++ ++..+..+++|++|++++|.+. +..+..+
T Consensus       183 ~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~  258 (317)
T 3o53_A          183 DV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (317)
T ss_dssp             EE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred             cc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence            54 3 344689999999999999854 4568899999999999999995 5677889999999999999998 5556667


Q ss_pred             CCCCCCceecCCCC
Q 045837          335 PGSKEGGVFDDTSN  348 (527)
Q Consensus       335 ~~l~~L~~L~l~~N  348 (527)
                      ..+.+|+.|+++++
T Consensus       259 ~~~~~L~~l~l~~~  272 (317)
T 3o53_A          259 SKNQRVQTVAKQTV  272 (317)
T ss_dssp             HTCHHHHHHHHHHH
T ss_pred             hccccceEEECCCc
Confidence            78888999888743

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.93  E-value=7.3e-25  Score=237.90  Aligned_cols=132  Identities=17%  Similarity=0.192  Sum_probs=114.7

Q ss_pred             eEeccCCcCCccCCCCCCCCCCCcEEEcccCCCC-CCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCC
Q 045837          222 VVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLM-GCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYN  300 (527)
Q Consensus       222 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  300 (527)
                      .+++++|.+.+..+..+..+..|++|+|++|.+. +..+..|..+++|++|||++|++++..+..|.++.+|++|+|++|
T Consensus       449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N  528 (635)
T 4g8a_A          449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN  528 (635)
T ss_dssp             EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC
Confidence            3344444444445566778899999999999754 456778999999999999999999988999999999999999999


Q ss_pred             CCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCC-CCCceecCCCCCCCCC
Q 045837          301 QLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGS-KEGGVFDDTSNCLAQR  353 (527)
Q Consensus       301 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~  353 (527)
                      +|++..+..|.++++|++|+|++|+|++..+..+..+ .+|++|++++|.++.-
T Consensus       529 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          529 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            9999989999999999999999999999999999888 6899999999998753

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=2.1e-25  Score=222.61  Aligned_cols=208  Identities=14%  Similarity=0.213  Sum_probs=173.6

Q ss_pred             CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCccccc-----
Q 045837           96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLS-----  170 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----  170 (527)
                      +..+++|++|+|++|.+. .++..++++++|++|+|++|+|. .++..|.++.+|++|+|++|++.+.++..+..     
T Consensus       100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~  177 (328)
T 4fcg_A          100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG  177 (328)
T ss_dssp             GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred             hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence            345789999999999998 68889999999999999999999 77889999999999999999888888877654     


Q ss_pred             ----CCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcE
Q 045837          171 ----WTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNE  246 (527)
Q Consensus       171 ----l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  246 (527)
                          +.+|++|+|++|.++ .++..+..                      ..+|++|+|++|++.+ ++..++.+.+|++
T Consensus       178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~----------------------l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~  233 (328)
T 4fcg_A          178 EHQGLVNLQSLRLEWTGIR-SLPASIAN----------------------LQNLKSLKIRNSPLSA-LGPAIHHLPKLEE  233 (328)
T ss_dssp             CEEESTTCCEEEEEEECCC-CCCGGGGG----------------------CTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred             hhccCCCCCEEECcCCCcC-cchHhhcC----------------------CCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence                888888888888887 56544332                      2356677777777764 4456788888999


Q ss_pred             EEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCccc
Q 045837          247 IILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYF  326 (527)
Q Consensus       247 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l  326 (527)
                      |+|++|.+.+.++..++++.+|++|+|++|++.+.++..+..+.+|++|+|++|.+.+.++..+.++++|+.+++..|.+
T Consensus       234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            99999888888888888889999999999888888888888889999999999988888898999999999999888866


Q ss_pred             CCC
Q 045837          327 QGL  329 (527)
Q Consensus       327 ~~~  329 (527)
                      ...
T Consensus       314 ~~l  316 (328)
T 4fcg_A          314 AQL  316 (328)
T ss_dssp             CC-
T ss_pred             HHH
Confidence            554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.93  E-value=2e-24  Score=225.25  Aligned_cols=188  Identities=15%  Similarity=0.215  Sum_probs=97.3

Q ss_pred             CCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccE
Q 045837           97 SNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRY  176 (527)
Q Consensus        97 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  176 (527)
                      ..+++|++|+|++|.+++.   .++.+++|++|++++|+|++.   .|+++.+|++|++++|++++.   .+..+.+|++
T Consensus        61 ~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L~~N~l~~l---~~~~l~~L~~  131 (457)
T 3bz5_A           61 EKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKL---DVSQNPLLTY  131 (457)
T ss_dssp             GGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC---CCTTCTTCCEEECCSSCCSCC---CCTTCTTCCE
T ss_pred             cccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCcee---ecCCCCcCCEEECCCCcCCee---cCCCCCcCCE
Confidence            3445555555555555553   255555555555555555543   255555555555555555542   1455555555


Q ss_pred             EecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCC
Q 045837          177 LDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMG  256 (527)
Q Consensus       177 L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  256 (527)
                      |++++|.+++ ++ .....+|++|++++|...+.+ ......+|++|++++|++++. +  ++.+.+|++|++++|.+++
T Consensus       132 L~l~~N~l~~-l~-l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~  205 (457)
T 3bz5_A          132 LNCARNTLTE-ID-VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITK  205 (457)
T ss_dssp             EECTTSCCSC-CC-CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSC
T ss_pred             EECCCCccce-ec-cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCe
Confidence            5555555553 21 111145555555555433322 111223455566665555542 1  5555556666666665553


Q ss_pred             CChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCc
Q 045837          257 CLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGY  305 (527)
Q Consensus       257 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  305 (527)
                      .   .++.+.+|++|+|++|++++ ++  +..+.+|++|+|++|++++.
T Consensus       206 ~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~  248 (457)
T 3bz5_A          206 L---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL  248 (457)
T ss_dssp             C---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred             e---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence            3   25555556666666666554 33  55555566666666665554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=1.9e-26  Score=228.69  Aligned_cols=223  Identities=16%  Similarity=0.180  Sum_probs=181.9

Q ss_pred             eEEEEEcCCCCcC-CCCccccC-------CCCCCCEEEccCCcccccccccc--cCCCCCcEEEeecCcCcccCCccccc
Q 045837          101 VVAGIDLNGNDIA-GYFPAELG-------WLSDLALFHVNSNRFCGIIPESL--SNWKLIYEFDVSNNRLVGSFPNVCLS  170 (527)
Q Consensus       101 ~L~~L~L~~n~l~-~~~~~~l~-------~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~  170 (527)
                      .|+.|+|++|.+. ..++..+.       ++++|++|+|++|+|++.++..+  .++.+|++|+|++|++++. +..+..
T Consensus        64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~  142 (312)
T 1wwl_A           64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAE  142 (312)
T ss_dssp             HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHH
T ss_pred             HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHH
Confidence            3788899999884 34555554       78999999999999998888776  8899999999999999976 777776


Q ss_pred             C-----CcccEEecccCCCCCCcchhhhc-cccchhhccccccccccc---cc--cCCCCcceEeccCCcCCcc---CCC
Q 045837          171 W-----TSLRYLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIP---ET--IGESTVSVVTFAHNNFSGC---VPR  236 (527)
Q Consensus       171 l-----~~L~~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~---~~--~~~~~L~~L~L~~n~l~~~---~~~  236 (527)
                      +     .+|++|+|++|.+++..+..+.. .+|++|+|++|++.+...   ..  ....+|++|++++|++.+.   ...
T Consensus       143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  222 (312)
T 1wwl_A          143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA  222 (312)
T ss_dssp             HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred             HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence            6     89999999999998655555555 689999999999876421   11  2346799999999999842   223


Q ss_pred             CCCCCCCCcEEEcccCCCCCCCh-hhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCC
Q 045837          237 SIGNMPNVNEIILSNNDLMGCLP-SEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPN  315 (527)
Q Consensus       237 ~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  315 (527)
                      .+.++.+|++|+|++|.+++..+ ..+..+.+|++|+|++|+++ .++..+.  .+|++|+|++|+|++. +. +..+++
T Consensus       223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~  297 (312)
T 1wwl_A          223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQ  297 (312)
T ss_dssp             HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCE
T ss_pred             HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCC
Confidence            34577899999999999997664 45677899999999999998 7777766  8999999999999987 44 889999


Q ss_pred             CcEEEecCcccCCC
Q 045837          316 INNFTFSYNYFQGL  329 (527)
Q Consensus       316 L~~L~Ls~N~l~~~  329 (527)
                      |++|++++|.|++.
T Consensus       298 L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          298 VGNLSLKGNPFLDS  311 (312)
T ss_dssp             EEEEECTTCTTTCC
T ss_pred             CCEEeccCCCCCCC
Confidence            99999999999864

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=3.2e-26  Score=240.82  Aligned_cols=213  Identities=14%  Similarity=0.067  Sum_probs=166.2

Q ss_pred             CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCccc
Q 045837           96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLR  175 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  175 (527)
                      +..+++|+.|+|++|.+.+..+  |..+++|++|+|++|.|++..     ...+|++|+|++|.+++....   .+.+|+
T Consensus        54 ~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~~N~l~~~~~~---~l~~L~  123 (487)
T 3oja_A           54 LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKK  123 (487)
T ss_dssp             GTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCCCEEEC---CCSSCE
T ss_pred             HhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECcCCcCCCCCcc---ccCCCC
Confidence            5678899999999999988654  899999999999999998543     348999999999999976543   458899


Q ss_pred             EEecccCCCCCCcchhhhc-cccchhhccccccccccccccC--CCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccC
Q 045837          176 YLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIG--ESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNN  252 (527)
Q Consensus       176 ~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N  252 (527)
                      +|+|++|.+++..+..+.. .+|++|+|++|.+++..+..+.  ..+|++|+|++|.+.+..  .+..+.+|++|+|++|
T Consensus       124 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N  201 (487)
T 3oja_A          124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSN  201 (487)
T ss_dssp             EEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSS
T ss_pred             EEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCC
Confidence            9999999999766655554 6888888888888887666653  456888888888887653  2345778888888888


Q ss_pred             CCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCC-CcchhhhhCCCCCcEEEec
Q 045837          253 DLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLT-GYVSEQICKLPNINNFTFS  322 (527)
Q Consensus       253 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~Ls  322 (527)
                      .+++.. ..+..+.+|+.|+|++|.+++ ++..+..+.+|+.|+|++|.+. +.++.++..+..|+.|+++
T Consensus       202 ~l~~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          202 KLAFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CCCEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            887543 347778888888888888874 5666777788888888888877 5566667777777777765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=2.1e-24  Score=209.98  Aligned_cols=206  Identities=15%  Similarity=0.101  Sum_probs=117.0

Q ss_pred             CCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhcc
Q 045837          124 SDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLN  203 (527)
Q Consensus       124 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~  203 (527)
                      .+|++|+|++|+|++.....|.++.+|++|+|++|++++.....|.++.+|++|+|++|.+++..+..+.          
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----------   97 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS----------   97 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT----------
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc----------
Confidence            3466666666666655555566666666666666666555444555666666666666665522111111          


Q ss_pred             ccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCC-ChhhccCCCCCCEEEccCCcccccC
Q 045837          204 NNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC-LPSEIGWLKKLTVFDASSNSFYGSV  282 (527)
Q Consensus       204 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~  282 (527)
                                  ...+|++|++++|++.+.....++.+.+|++|++++|.+++. ++..+.++++|++|+|++|++++..
T Consensus        98 ------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A           98 ------------GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             ------------TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             ------------CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence                        112344444444444444333455666666666666666542 4556666666666666666666554


Q ss_pred             CcccCCCCCCc----EEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCC
Q 045837          283 PQSFSSLESIH----RLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQ  352 (527)
Q Consensus       283 p~~~~~l~~L~----~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  352 (527)
                      ...+..+.+|+    +|++++|.+++.....+.. .+|++|++++|++++.....|..+.+|+.|++++|.++.
T Consensus       166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             HHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            44554444444    6666666666544443332 356666676666666655556666666677777666664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=2.5e-24  Score=224.43  Aligned_cols=237  Identities=14%  Similarity=0.131  Sum_probs=146.3

Q ss_pred             CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCccc
Q 045837           96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLR  175 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  175 (527)
                      +..+++|++|+|++|.+++.   .++++++|++|++++|++++.   .++++.+|++|++++|++++.   .+..+.+|+
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L~~N~l~~l---~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~  151 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNTLTEI---DVSHNTQLT  151 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCC---CCTTCTTCCEEECCSSCCSCC---CCTTCTTCCEEECTTSCCSCC---CCTTCTTCC
T ss_pred             cccCCCCCEEECcCCCCcee---ecCCCCcCCEEECCCCcCCee---cCCCCCcCCEEECCCCcccee---ccccCCcCC
Confidence            45667777777777777764   267777777777777777754   267777777777777777653   255666666


Q ss_pred             EEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCC
Q 045837          176 YLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLM  255 (527)
Q Consensus       176 ~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  255 (527)
                      +|++++|...+.+. .....+|++|++++|++++..  .....+|++|++++|++.+.   .++.+.+|++|++++|+++
T Consensus       152 ~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~  225 (457)
T 3bz5_A          152 ELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT  225 (457)
T ss_dssp             EEECTTCSCCCCCC-CTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCS
T ss_pred             EEECCCCCcccccc-cccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccc
Confidence            66666664433441 111246666666666666532  22233456666666665543   2555555666666666655


Q ss_pred             CCChhhccCCCCCCEEEccCCcccccCCcc-----------------------------cCCCCCCcEEeccCCCCCCcc
Q 045837          256 GCLPSEIGWLKKLTVFDASSNSFYGSVPQS-----------------------------FSSLESIHRLVLSYNQLTGYV  306 (527)
Q Consensus       256 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~-----------------------------~~~l~~L~~L~Ls~N~l~~~~  306 (527)
                      + ++  ++.+.+|++|++++|++++.....                             +..+.+|+.|+|++|.+.+.+
T Consensus       226 ~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l  302 (457)
T 3bz5_A          226 E-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLL  302 (457)
T ss_dssp             C-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEE
T ss_pred             c-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCccccee
Confidence            4 33  555555555555555555432222                             233456666666666554433


Q ss_pred             hh--------hhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCC
Q 045837          307 SE--------QICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQR  353 (527)
Q Consensus       307 ~~--------~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  353 (527)
                      +.        .+.++++|++|++++|+|+++   .+.++.+|+.|++++|.|+++
T Consensus       303 ~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l  354 (457)
T 3bz5_A          303 DCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDF  354 (457)
T ss_dssp             ECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBC
T ss_pred             ccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCCc
Confidence            32        245667888888888888885   377888888888888888864

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=3e-24  Score=208.87  Aligned_cols=207  Identities=16%  Similarity=0.147  Sum_probs=174.9

Q ss_pred             ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837          100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL  179 (527)
Q Consensus       100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  179 (527)
                      .+|++|+|++|.+++.....|.++++|++|+|++|+|.+.....|.++.+|++|+|++|++++..+..|.++.+|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            46999999999999887778999999999999999999888888999999999999999999887788999999999999


Q ss_pred             ccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCcc-CCCCCCCCCCCcEEEcccCCCCCCC
Q 045837          180 RYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGC-VPRSIGNMPNVNEIILSNNDLMGCL  258 (527)
Q Consensus       180 s~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~~  258 (527)
                      ++|.+++.....+.                      ...+|++|++++|.+.+. ++..|.++.+|++|+|++|.+++..
T Consensus       108 ~~n~l~~~~~~~~~----------------------~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A          108 VETNLASLENFPIG----------------------HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             TTSCCCCSTTCCCT----------------------TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             CCCCccccCchhcc----------------------cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence            99998732221111                      224578888888887763 5778899999999999999999777


Q ss_pred             hhhccCCCCCC----EEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCC
Q 045837          259 PSEIGWLKKLT----VFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGL  329 (527)
Q Consensus       259 p~~~~~l~~L~----~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  329 (527)
                      ...+..+.+|+    +|++++|.+++.....+. ..+|++|+|++|+|++.....+.++.+|++|++++|.+.+.
T Consensus       166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred             HHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence            77777776666    899999999866555554 45899999999999988777889999999999999999864

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.91  E-value=2.2e-24  Score=224.70  Aligned_cols=232  Identities=16%  Similarity=0.218  Sum_probs=102.0

Q ss_pred             cceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCC-------------cEEEeecCcCcccCC
Q 045837           99 ITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLI-------------YEFDVSNNRLVGSFP  165 (527)
Q Consensus        99 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------------~~L~Ls~n~l~~~~~  165 (527)
                      .++|++|++++|.+ +.+|..++++++|++|++++|++.+.++..++++.+|             ++|++++|.+++ ++
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp   87 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP   87 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence            35566666666666 5566666666666666666666666666666655543             666666666553 22


Q ss_pred             cccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCc
Q 045837          166 NVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVN  245 (527)
Q Consensus       166 ~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~  245 (527)
                      ..   ..+|++|++++|.+++ ++..+  .+|++|++++|++++... .  ..+|++|++++|++.+ ++ .|+++.+|+
T Consensus        88 ~~---~~~L~~L~l~~n~l~~-lp~~~--~~L~~L~l~~n~l~~l~~-~--~~~L~~L~L~~n~l~~-lp-~~~~l~~L~  156 (454)
T 1jl5_A           88 EL---PPHLESLVASCNSLTE-LPELP--QSLKSLLVDNNNLKALSD-L--PPLLEYLGVSNNQLEK-LP-ELQNSSFLK  156 (454)
T ss_dssp             SC---CTTCSEEECCSSCCSS-CCCCC--TTCCEEECCSSCCSCCCS-C--CTTCCEEECCSSCCSS-CC-CCTTCTTCC
T ss_pred             CC---cCCCCEEEccCCcCCc-ccccc--CCCcEEECCCCccCcccC-C--CCCCCEEECcCCCCCC-Cc-ccCCCCCCC
Confidence            21   2455666666665553 43321  455555555555544211 0  0245555555555553 33 355555555


Q ss_pred             EEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCC-------------------cc
Q 045837          246 EIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTG-------------------YV  306 (527)
Q Consensus       246 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-------------------~~  306 (527)
                      +|++++|.+++ ++..   ..+|++|++++|++++ ++ .+.++.+|++|++++|++++                   .+
T Consensus       157 ~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~l  230 (454)
T 1jl5_A          157 IIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEEL  230 (454)
T ss_dssp             EEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSC
T ss_pred             EEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcc
Confidence            55555555542 3322   1345555555555543 22 34444444444444444443                   22


Q ss_pred             hhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCC
Q 045837          307 SEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRP  354 (527)
Q Consensus       307 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  354 (527)
                      + .+.++++|++|++++|+++++..    ...+|+.|++++|.+++++
T Consensus       231 p-~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~  273 (454)
T 1jl5_A          231 P-ELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLP  273 (454)
T ss_dssp             C-CCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCC
T ss_pred             c-ccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccC
Confidence            2 24455555555555555554321    1244555555555555443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.91  E-value=2.5e-25  Score=225.29  Aligned_cols=250  Identities=17%  Similarity=0.180  Sum_probs=192.8

Q ss_pred             EEEcCCCCcCCCCccccCCCCCCCEEEccCCccccccc----ccccCCC-CCcEEEeecCcCcccCCcccccC-----Cc
Q 045837          104 GIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIP----ESLSNWK-LIYEFDVSNNRLVGSFPNVCLSW-----TS  173 (527)
Q Consensus       104 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~  173 (527)
                      .++|++|++++.++..+...++|++|+|++|+|.+...    +.|.++. +|++|+|++|++++.....+..+     .+
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46788889988888777777789999999999987665    6778888 89999999999987666666554     88


Q ss_pred             ccEEecccCCCCCCcchhhhc------cccchhhccccccccccccccC------CCCcceEeccCCcCCccCC----CC
Q 045837          174 LRYLDLRYNNFEGEVPRELFK------MKLDAIFLNNNRFSSWIPETIG------ESTVSVVTFAHNNFSGCVP----RS  237 (527)
Q Consensus       174 L~~L~Ls~n~i~~~~p~~~~~------~~L~~L~L~~n~l~~~~~~~~~------~~~L~~L~L~~n~l~~~~~----~~  237 (527)
                      |++|+|++|.+++.....+..      .+|++|+|++|++++.....+.      ..+|++|+|++|.+.+...    ..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            999999999998655554333      4899999999998876554432      2479999999999985332    23


Q ss_pred             CCCCC-CCcEEEcccCCCCCCChhhc----cCC-CCCCEEEccCCccccc----CCcccCC-CCCCcEEeccCCCCCCcc
Q 045837          238 IGNMP-NVNEIILSNNDLMGCLPSEI----GWL-KKLTVFDASSNSFYGS----VPQSFSS-LESIHRLVLSYNQLTGYV  306 (527)
Q Consensus       238 l~~l~-~L~~L~Ls~N~l~~~~p~~~----~~l-~~L~~L~Ls~n~l~~~----~p~~~~~-l~~L~~L~Ls~N~l~~~~  306 (527)
                      +..+. +|++|+|++|.+++.....+    ..+ ++|++|||++|.+++.    +...+.. ..+|++|+|++|.|++..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            34454 89999999999987766444    344 6999999999999853    3344444 458999999999998765


Q ss_pred             h----hhhhCCCCCcEEEecCcccCCCCC-------CCCCCCCCCceecCCCCCCCCC
Q 045837          307 S----EQICKLPNINNFTFSYNYFQGLGN-------ECIPGSKEGGVFDDTSNCLAQR  353 (527)
Q Consensus       307 ~----~~l~~l~~L~~L~Ls~N~l~~~~~-------~~~~~l~~L~~L~l~~N~l~~~  353 (527)
                      .    ..+..+.+|++|+|++|.+.++..       ..+..+.+|+.||+++|.|...
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            4    344677899999999999665543       3577888999999999998754

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=3.6e-23  Score=198.38  Aligned_cols=191  Identities=16%  Similarity=0.238  Sum_probs=123.1

Q ss_pred             CCccccceeeCCCCCCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcC
Q 045837           81 DVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRL  160 (527)
Q Consensus        81 ~~c~~~gv~c~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l  160 (527)
                      ++|.|.|..|.        ...++++++++.+.. ++..+.  .+|++|+|++|+|.+..+..|.++.+|++|+|++|++
T Consensus         3 ~Cp~~~gC~C~--------~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   71 (251)
T 3m19_A            3 TCETVTGCTCN--------EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL   71 (251)
T ss_dssp             -CHHHHSSEEE--------GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             cCCCCCceEcC--------CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC
Confidence            56788899994        245689999999876 444444  6899999999999988888899999999999999999


Q ss_pred             cccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCC
Q 045837          161 VGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGN  240 (527)
Q Consensus       161 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  240 (527)
                      ++..+..|..+.+|++|+|++|.++ .++...+.                     ...+|++|+|++|++.+.....|..
T Consensus        72 ~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~---------------------~l~~L~~L~L~~N~l~~~~~~~~~~  129 (251)
T 3m19_A           72 QTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFD---------------------HLTQLDKLYLGGNQLKSLPSGVFDR  129 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTT---------------------TCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CccCHhHhccCCcCCEEECCCCccc-ccChhHhc---------------------ccCCCCEEEcCCCcCCCcChhHhcc
Confidence            8877777888889999999888887 22211100                     1123444444444444443334455


Q ss_pred             CCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCC
Q 045837          241 MPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTG  304 (527)
Q Consensus       241 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  304 (527)
                      +.+|++|+|++|.+++..+..|+.+.+|++|+|++|++++..+..|..+.+|++|+|++|.+++
T Consensus       130 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            5555555555555554434345555555555555555554444445555555555555555544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=4.7e-23  Score=201.84  Aligned_cols=202  Identities=15%  Similarity=0.192  Sum_probs=127.7

Q ss_pred             CcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEE
Q 045837           98 NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYL  177 (527)
Q Consensus        98 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  177 (527)
                      .+.+++.|++++++++. ++..+.  ++|++|+|++|+|.+..+..|.++.+|++|+|++|.+++...  ...+.+|++|
T Consensus         8 ~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L   82 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTL   82 (290)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEE
T ss_pred             ccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEE
Confidence            45677888888888775 343332  578888888888887777778888888888888888774422  2567777777


Q ss_pred             ecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCC
Q 045837          178 DLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC  257 (527)
Q Consensus       178 ~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  257 (527)
                      +|++|.++ .++..+.                      ...+|++|++++|++.+..+..|.++.+|++|+|++|++++.
T Consensus        83 ~Ls~N~l~-~l~~~~~----------------------~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~  139 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLGQ----------------------TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL  139 (290)
T ss_dssp             ECCSSCCS-SCCCCTT----------------------TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC
T ss_pred             ECCCCcCC-cCchhhc----------------------cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc
Confidence            77777776 3332211                      123455555666655555445566666666666666666655


Q ss_pred             ChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCC
Q 045837          258 LPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQG  328 (527)
Q Consensus       258 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  328 (527)
                      .+..|..+.+|++|+|++|++++.....|..+.+|++|+|++|+|+ .++..+..+.+|++|+|++|.+..
T Consensus       140 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            4555566666666666666666444444556666666666666666 334445555566666666666543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=2.8e-23  Score=201.62  Aligned_cols=206  Identities=18%  Similarity=0.194  Sum_probs=124.1

Q ss_pred             CcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEE
Q 045837           98 NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYL  177 (527)
Q Consensus        98 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  177 (527)
                      .+.+|+.|++++|.+...  ..+..+++|++|+|++|++.+.  ..+.++.+|++|+|++|++++..+..|.++.+|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            445677777777776643  2466677777777777777653  356677777777777777776555556667777777


Q ss_pred             ecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCC
Q 045837          178 DLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC  257 (527)
Q Consensus       178 ~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  257 (527)
                      +|++|.+++..+..+.                      ...+|++|++++|++.+.....|..+.+|++|++++|.+++.
T Consensus       115 ~L~~n~l~~~~~~~~~----------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  172 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFD----------------------KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL  172 (272)
T ss_dssp             ECTTSCCCCCCTTTTT----------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             ECCCCcCCccCHHHhc----------------------cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence            7777766522111110                      123455555555555544444556666666666666666655


Q ss_pred             ChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCC
Q 045837          258 LPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPG  336 (527)
Q Consensus       258 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~  336 (527)
                      .+..++.+.+|++|+|++|++++..+..+..+.+|++|+|++|.+.+       .+++|+.|++.+|+++|.++..+..
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~  244 (272)
T 3rfs_A          173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGS  244 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred             CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccc
Confidence            55555666666666666666665555555666666666666666553       2334556666666666665554443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.6e-22  Score=195.96  Aligned_cols=199  Identities=19%  Similarity=0.202  Sum_probs=164.1

Q ss_pred             ccceeeCCCCC----CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcC
Q 045837           85 YYGVFCAPAPD----NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRL  160 (527)
Q Consensus        85 ~~gv~c~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l  160 (527)
                      +..+.|.....    ..-..+++.|+|++|++.++....|.++++|++|+|++|+|+.+....|.++.+|++|+|++|++
T Consensus        18 ~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l   97 (270)
T 2o6q_A           18 KNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL   97 (270)
T ss_dssp             TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC
T ss_pred             CCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC
Confidence            45566653221    11235699999999999988777899999999999999999987777789999999999999999


Q ss_pred             cccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCC
Q 045837          161 VGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGN  240 (527)
Q Consensus       161 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  240 (527)
                      ++.....|.++.+|++|+|++|.+++..+..+.                      ...+|++|+|++|++.+.....|..
T Consensus        98 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----------------------~l~~L~~L~Ls~n~l~~~~~~~~~~  155 (270)
T 2o6q_A           98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD----------------------SLTKLTYLSLGYNELQSLPKGVFDK  155 (270)
T ss_dssp             CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTT----------------------TCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CcCCHhHcccccCCCEEECCCCccCeeCHHHhC----------------------cCcCCCEEECCCCcCCccCHhHccC
Confidence            977777888999999999999999833222111                      2246788888888888766667899


Q ss_pred             CCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCc
Q 045837          241 MPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGY  305 (527)
Q Consensus       241 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  305 (527)
                      +.+|++|+|++|.+++..+..|.++.+|++|+|++|++++.....|..+.+|+.|+|++|.+...
T Consensus       156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            99999999999999977777799999999999999999977666788999999999999998753

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=1.2e-22  Score=199.05  Aligned_cols=205  Identities=16%  Similarity=0.152  Sum_probs=171.5

Q ss_pred             ccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccc
Q 045837          119 ELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLD  198 (527)
Q Consensus       119 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~  198 (527)
                      .+.++.+|++|++++|+++. ++..+.  .+|++|+|++|++++..+..|..+.+|++|+|++|.|+ .++..       
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-------   73 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-------   73 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-------
T ss_pred             cccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-------
Confidence            36678889999999998884 444443  67899999999998777778888999999999999887 22211       


Q ss_pred             hhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcc
Q 045837          199 AIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSF  278 (527)
Q Consensus       199 ~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l  278 (527)
                                      ....+|++|+|++|++. .++..+..+.+|++|+|++|++++..+..|.++.+|++|+|++|++
T Consensus        74 ----------------~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l  136 (290)
T 1p9a_G           74 ----------------GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL  136 (290)
T ss_dssp             ----------------SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC
T ss_pred             ----------------CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC
Confidence                            12346888888888887 5667788999999999999999977778899999999999999999


Q ss_pred             cccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCC
Q 045837          279 YGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQ  352 (527)
Q Consensus       279 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  352 (527)
                      ++..+..|..+.+|+.|+|++|+|+++....+.++.+|++|+|++|+|+.+ +..+..+.+|+.|++++|.+..
T Consensus       137 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBCC
T ss_pred             CccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCccC
Confidence            977777788999999999999999988777888999999999999999965 5566777899999999999864

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.90  E-value=1.6e-22  Score=210.61  Aligned_cols=121  Identities=19%  Similarity=0.255  Sum_probs=74.0

Q ss_pred             ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837          100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL  179 (527)
Q Consensus       100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  179 (527)
                      ++|++|+|++|.+++ ++ .|+++++|++|++++|++++ ++..   ..+|++|++++|++++ ++ .+.++.+|++|++
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l  202 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence            567788888887776 44 57777888888888877775 3332   2467777777777764 33 4666777777777


Q ss_pred             ccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCc
Q 045837          180 RYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSG  232 (527)
Q Consensus       180 s~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~  232 (527)
                      ++|.+++ ++...  .+|++|++++|.+.. ++......+|++|++++|++.+
T Consensus       203 ~~N~l~~-l~~~~--~~L~~L~l~~n~l~~-lp~~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          203 DNNSLKK-LPDLP--LSLESIVAGNNILEE-LPELQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             CSSCCSS-CCCCC--TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS
T ss_pred             CCCcCCc-CCCCc--CcccEEECcCCcCCc-ccccCCCCCCCEEECCCCcCCc
Confidence            7777663 33221  356666666666553 3332223345555555555553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.89  E-value=1.2e-22  Score=218.28  Aligned_cols=220  Identities=19%  Similarity=0.201  Sum_probs=107.3

Q ss_pred             ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837          100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL  179 (527)
Q Consensus       100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  179 (527)
                      ++|+.|+|++|.++. ++.   .+++|++|+|++|+|++ ++.   .+.+|++|+|++|.+++. +.   .+.+|++|+|
T Consensus        61 ~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L  128 (622)
T 3g06_A           61 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWI  128 (622)
T ss_dssp             TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEEC
T ss_pred             CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEEC
Confidence            455666666666554 222   34566666666666553 222   455666666666666532 22   3456666666


Q ss_pred             ccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCCh
Q 045837          180 RYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLP  259 (527)
Q Consensus       180 s~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  259 (527)
                      ++|+++ .++..+  .+|++|+|++|.+++.. .  ...+|++|++++|.+.+. +   ..+.+|++|+|++|.+++ ++
T Consensus       129 ~~N~l~-~lp~~l--~~L~~L~Ls~N~l~~l~-~--~~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~-l~  197 (622)
T 3g06_A          129 FGNQLT-SLPVLP--PGLQELSVSDNQLASLP-A--LPSELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLAS-LP  197 (622)
T ss_dssp             CSSCCS-CCCCCC--TTCCEEECCSSCCSCCC-C--CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CC
T ss_pred             CCCCCC-cCCCCC--CCCCEEECcCCcCCCcC-C--ccCCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCCC-CC
Confidence            666665 344322  56666666666665521 1  112355555555555432 2   233566666666666653 22


Q ss_pred             hhcc-----------------CCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEec
Q 045837          260 SEIG-----------------WLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFS  322 (527)
Q Consensus       260 ~~~~-----------------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls  322 (527)
                      ..+.                 .+.+|++|+|++|+|++ ++   ..+.+|++|+|++|+|+++ +.   .+.+|++|+|+
T Consensus       198 ~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~l-p~---~~~~L~~L~Ls  269 (622)
T 3g06_A          198 TLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSL-PM---LPSGLLSLSVY  269 (622)
T ss_dssp             CCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECC
T ss_pred             CccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcC-Cc---ccccCcEEeCC
Confidence            2110                 11334444444444442 22   2234444555555544432 21   33445555555


Q ss_pred             CcccCCCCCCCCCCCCCCceecCCCCCCC
Q 045837          323 YNYFQGLGNECIPGSKEGGVFDDTSNCLA  351 (527)
Q Consensus       323 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  351 (527)
                      +|+|+.+ +..+.++.+|+.|++++|.|+
T Consensus       270 ~N~L~~l-p~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          270 RNQLTRL-PESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             SSCCCSC-CGGGGGSCTTCEEECCSCCCC
T ss_pred             CCCCCcC-CHHHhhccccCEEEecCCCCC
Confidence            5555422 334444555555555555544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=1.5e-22  Score=192.61  Aligned_cols=196  Identities=13%  Similarity=0.098  Sum_probs=114.9

Q ss_pred             CCCEEEccCCcccccccccccCCCCCcEEEeecCc-CcccCCcccccCCcccEEeccc-CCCCCCcchhhhccccchhhc
Q 045837          125 DLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNR-LVGSFPNVCLSWTSLRYLDLRY-NNFEGEVPRELFKMKLDAIFL  202 (527)
Q Consensus       125 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~p~~~~~~~L~~L~L  202 (527)
                      +|++|+|++|+|+++....|.++.+|++|+|++|+ ++......|.++.+|++|+|++ |.++ .++...+.        
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~--------  102 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALK--------  102 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEE--------
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhC--------
Confidence            56666666666665555566666666666666665 5544444566666666666666 6665 22211110        


Q ss_pred             cccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCc---EEEcccC-CCCCCChhhccCCCCCC-EEEccCCc
Q 045837          203 NNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVN---EIILSNN-DLMGCLPSEIGWLKKLT-VFDASSNS  277 (527)
Q Consensus       203 ~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~-~L~Ls~n~  277 (527)
                                   +..+|++|++++|++.+ ++. |..+.+|+   +|++++| .+++.....|.++.+|+ +|++++|+
T Consensus       103 -------------~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~  167 (239)
T 2xwt_C          103 -------------ELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG  167 (239)
T ss_dssp             -------------CCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred             -------------CCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence                         11234444444444443 222 44555555   7777777 66655555566777777 77777777


Q ss_pred             ccccCCcccCCCCCCcEEeccCCC-CCCcchhhhhCC-CCCcEEEecCcccCCCCCCCCCCCCCCceecCCCC
Q 045837          278 FYGSVPQSFSSLESIHRLVLSYNQ-LTGYVSEQICKL-PNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSN  348 (527)
Q Consensus       278 l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  348 (527)
                      ++ .++.......+|++|+|++|+ ++++....|.++ .+|++|++++|+++++...   .+.+|+.|+++++
T Consensus       168 l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          168 FT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             CC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             Cc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            76 333332223677777777774 766556667777 7777777777777765443   4556666666654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=5.3e-23  Score=199.68  Aligned_cols=219  Identities=15%  Similarity=0.134  Sum_probs=170.7

Q ss_pred             cceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEe
Q 045837           99 ITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLD  178 (527)
Q Consensus        99 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  178 (527)
                      +..+..+++.++.+.+.  ..+..+++|++|++++|.+...  ..+..+++|++|+|++|.+++.  ..+..+.+|++|+
T Consensus        18 ~~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~   91 (272)
T 3rfs_A           18 FAETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLI   91 (272)
T ss_dssp             HHHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEE
T ss_pred             HHHHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEE
Confidence            34455666777666554  2455678888888888887743  2477788888888888888753  3667778888888


Q ss_pred             cccCCCCCCcchhhhccccchhhcccccccccccccc-CCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCC
Q 045837          179 LRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETI-GESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC  257 (527)
Q Consensus       179 Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  257 (527)
                      |++|.+++..+                       ..+ ...+|++|++++|++.+..+..|+.+.+|++|+|++|.+++.
T Consensus        92 L~~n~l~~~~~-----------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  148 (272)
T 3rfs_A           92 LTGNQLQSLPN-----------------------GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL  148 (272)
T ss_dssp             CTTSCCCCCCT-----------------------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCccCccCh-----------------------hHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCcc
Confidence            88887763222                       112 224688888888888877777788999999999999999977


Q ss_pred             ChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCC
Q 045837          258 LPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGS  337 (527)
Q Consensus       258 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l  337 (527)
                      .+..++.+.+|++|+|++|++++..+..|..+.+|++|+|++|++++..+..+..+++|++|++++|.+.+.       +
T Consensus       149 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~  221 (272)
T 3rfs_A          149 PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------C  221 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------T
T ss_pred             CHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------C
Confidence            777788999999999999999977777788899999999999999998888889999999999999988754       5


Q ss_pred             CCCceecCCCCCCCCC
Q 045837          338 KEGGVFDDTSNCLAQR  353 (527)
Q Consensus       338 ~~L~~L~l~~N~l~~~  353 (527)
                      ++|+.|++..|.+++.
T Consensus       222 ~~l~~l~~~~n~~~g~  237 (272)
T 3rfs_A          222 PGIRYLSEWINKHSGV  237 (272)
T ss_dssp             TTTHHHHHHHHHTGGG
T ss_pred             cHHHHHHHHHHhCCCc
Confidence            5788889888888754

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=3.2e-23  Score=205.14  Aligned_cols=225  Identities=12%  Similarity=0.073  Sum_probs=154.0

Q ss_pred             ceEEEEEcCCCCcCCCCcc---ccCCCCCCCEEEccCCcccccccccc--cCCCCCcEEEeecCcCcccCC----ccccc
Q 045837          100 TVVAGIDLNGNDIAGYFPA---ELGWLSDLALFHVNSNRFCGIIPESL--SNWKLIYEFDVSNNRLVGSFP----NVCLS  170 (527)
Q Consensus       100 ~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~----~~~~~  170 (527)
                      .+++.|++.++.+....-.   .+..+.+|++|+|++|++.+..+..+  .++.+|++|+|++|.+++..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            3567888888777542111   12235679999999999998888887  889999999999999986443    23456


Q ss_pred             CCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCcc--C--CCCCCCCCCCcE
Q 045837          171 WTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGC--V--PRSIGNMPNVNE  246 (527)
Q Consensus       171 l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~  246 (527)
                      +.+|++|+|++|.+.+..+..+..                      ..+|++|+|++|++.+.  +  ...+..+.+|++
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~----------------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~  201 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRA----------------------FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQN  201 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCC----------------------CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCS
T ss_pred             ccCCCEEEeeCCCcchhhHHHhcc----------------------CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCE
Confidence            889999999999997444333322                      12355555555554331  1  122356677888


Q ss_pred             EEcccCCCCCCChh----hccCCCCCCEEEccCCcccccCCcccCCC---CCCcEEeccCCCCCCcchhhhhCCCCCcEE
Q 045837          247 IILSNNDLMGCLPS----EIGWLKKLTVFDASSNSFYGSVPQSFSSL---ESIHRLVLSYNQLTGYVSEQICKLPNINNF  319 (527)
Q Consensus       247 L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  319 (527)
                      |+|++|.++ .++.    .++.+.+|++|||++|++++..+..+..+   ++|++|+|++|+|+. ++..+.  ++|++|
T Consensus       202 L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L  277 (310)
T 4glp_A          202 LALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVL  277 (310)
T ss_dssp             CBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCSCE
T ss_pred             EECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCCEE
Confidence            888888776 3332    24667788888888888877666666555   578888888888873 444443  578888


Q ss_pred             EecCcccCCCCCCCCCCCCCCceecCCCCCCCC
Q 045837          320 TFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQ  352 (527)
Q Consensus       320 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  352 (527)
                      +|++|+|+++ + .+..+++|+.|++++|.|+.
T Consensus       278 ~Ls~N~l~~~-~-~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          278 DLSSNRLNRA-P-QPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             ECCSCCCCSC-C-CTTSCCCCSCEECSSTTTSC
T ss_pred             ECCCCcCCCC-c-hhhhCCCccEEECcCCCCCC
Confidence            8888888775 2 25667788888888888764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=1.7e-24  Score=221.18  Aligned_cols=233  Identities=18%  Similarity=0.199  Sum_probs=145.3

Q ss_pred             CcceEEEEEcCCCCcCCCC----ccccCCCCCCCEEEccCCc---ccccccccc-------cCCCCCcEEEeecCcCcc-
Q 045837           98 NITVVAGIDLNGNDIAGYF----PAELGWLSDLALFHVNSNR---FCGIIPESL-------SNWKLIYEFDVSNNRLVG-  162 (527)
Q Consensus        98 ~~~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~Ls~n~---i~~~~~~~~-------~~l~~L~~L~Ls~n~l~~-  162 (527)
                      .+++|++|+|++|.+.+..    ...|..+++|++|+|++|.   +.+.++..+       .++.+|++|+|++|.+.. 
T Consensus        30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence            4567888888888887653    2346678888888888853   344444333       677888888888888875 


Q ss_pred             ---cCCcccccCCcccEEecccCCCCCCcchhhhc--------------cccchhhccccccccc-cc---ccc-CCCCc
Q 045837          163 ---SFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK--------------MKLDAIFLNNNRFSSW-IP---ETI-GESTV  220 (527)
Q Consensus       163 ---~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~--------------~~L~~L~L~~n~l~~~-~~---~~~-~~~~L  220 (527)
                         .++..+..+.+|++|+|++|.+++.....+..              .+|++|+|++|+++.. +.   ..+ ...+|
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence               35556777888888888888876332222222              3677777777766522 21   111 22456


Q ss_pred             ceEeccCCcCCc-----cCCCCCCCCCCCcEEEcccCCCC----CCChhhccCCCCCCEEEccCCccccc----CCccc-
Q 045837          221 SVVTFAHNNFSG-----CVPRSIGNMPNVNEIILSNNDLM----GCLPSEIGWLKKLTVFDASSNSFYGS----VPQSF-  286 (527)
Q Consensus       221 ~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~-  286 (527)
                      ++|+|++|++..     ..+..+..+.+|++|+|++|.++    +.++..+..+++|++|+|++|.+++.    ++..+ 
T Consensus       190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~  269 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS  269 (386)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred             CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence            677777776662     22235566666777777777664    34555666666677777777766543    23344 


Q ss_pred             -CCCCCCcEEeccCCCCCC----cchhhh-hCCCCCcEEEecCcccCCCC
Q 045837          287 -SSLESIHRLVLSYNQLTG----YVSEQI-CKLPNINNFTFSYNYFQGLG  330 (527)
Q Consensus       287 -~~l~~L~~L~Ls~N~l~~----~~~~~l-~~l~~L~~L~Ls~N~l~~~~  330 (527)
                       +.+.+|++|+|++|.|++    .++..+ .++++|++|++++|.+++..
T Consensus       270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence             225667777777776665    244444 44666777777777666543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=6.7e-24  Score=216.73  Aligned_cols=239  Identities=15%  Similarity=0.177  Sum_probs=188.8

Q ss_pred             CccccCCCCCCCEEEccCCccccc----ccccccCCCCCcEEEeecCcC---cccCCccc-------ccCCcccEEeccc
Q 045837          116 FPAELGWLSDLALFHVNSNRFCGI----IPESLSNWKLIYEFDVSNNRL---VGSFPNVC-------LSWTSLRYLDLRY  181 (527)
Q Consensus       116 ~~~~l~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~-------~~l~~L~~L~Ls~  181 (527)
                      +...+..+++|++|+|++|+|...    +...|.++.+|++|+|++|.+   .+.++..+       ..+.+|++|+|++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            445677889999999999999875    334577899999999999744   34444333       6789999999999


Q ss_pred             CCCCCC----cchhhhc-cccchhhccccccccccccccCC--------------CCcceEeccCCcCCc-cCC---CCC
Q 045837          182 NNFEGE----VPRELFK-MKLDAIFLNNNRFSSWIPETIGE--------------STVSVVTFAHNNFSG-CVP---RSI  238 (527)
Q Consensus       182 n~i~~~----~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~--------------~~L~~L~L~~n~l~~-~~~---~~l  238 (527)
                      |.+++.    ++..+.. .+|++|+|++|.++......+..              .+|++|+|++|++.. .+.   ..|
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            999863    4444444 69999999999997544333322              589999999999983 232   356


Q ss_pred             CCCCCCcEEEcccCCCCC-----CChhhccCCCCCCEEEccCCccc----ccCCcccCCCCCCcEEeccCCCCCCc----
Q 045837          239 GNMPNVNEIILSNNDLMG-----CLPSEIGWLKKLTVFDASSNSFY----GSVPQSFSSLESIHRLVLSYNQLTGY----  305 (527)
Q Consensus       239 ~~l~~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----  305 (527)
                      ..+.+|++|+|++|.++.     ..+..+..+++|++|+|++|.++    +.++..+..+.+|++|+|++|.|++.    
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  263 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  263 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence            678899999999999973     23337888999999999999996    56777888999999999999999876    


Q ss_pred             chhhhhC--CCCCcEEEecCcccCC----CCCCCC-CCCCCCceecCCCCCCCCCC
Q 045837          306 VSEQICK--LPNINNFTFSYNYFQG----LGNECI-PGSKEGGVFDDTSNCLAQRP  354 (527)
Q Consensus       306 ~~~~l~~--l~~L~~L~Ls~N~l~~----~~~~~~-~~l~~L~~L~l~~N~l~~~~  354 (527)
                      ++..+..  +++|++|+|++|.+++    .++..+ .++++|+.|++++|.|++..
T Consensus       264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            4556643  8999999999999988    344445 56799999999999998654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=3.4e-24  Score=214.48  Aligned_cols=259  Identities=15%  Similarity=0.165  Sum_probs=189.9

Q ss_pred             ccccceeeCCCCCCCCcceEEEEEcCCCCcCCCCccccCCC--CCCCEEEccCCcccccccccccCCCCCcEEEeecCcC
Q 045837           83 CSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWL--SDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRL  160 (527)
Q Consensus        83 c~~~gv~c~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l  160 (527)
                      .+|.++.|+.       ..++.|+++++.+..   ..+..+  .+|++|++++|.+.+.... +.++.+|++|+|++|.+
T Consensus        37 ~~W~~~~~~~-------~~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l  105 (336)
T 2ast_B           37 KRWYRLASDE-------SLWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVI  105 (336)
T ss_dssp             HHHHHHHTCS-------TTSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEE
T ss_pred             HHHHHHhcCc-------hhheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCc
Confidence            3488877642       236788888887763   455556  7888999999888876654 55788899999998888


Q ss_pred             ccc-CCcccccCCcccEEecccCCCCCCcchhhhc-cccchhhcccc-ccccc-ccccc-CCCCcceEeccCC-cCCcc-
Q 045837          161 VGS-FPNVCLSWTSLRYLDLRYNNFEGEVPRELFK-MKLDAIFLNNN-RFSSW-IPETI-GESTVSVVTFAHN-NFSGC-  233 (527)
Q Consensus       161 ~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n-~l~~~-~~~~~-~~~~L~~L~L~~n-~l~~~-  233 (527)
                      ++. ++..+..+.+|++|+|++|.+++.++..+.. .+|++|+|++| .+++. +...+ ...+|++|++++| .+++. 
T Consensus       106 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~  185 (336)
T 2ast_B          106 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH  185 (336)
T ss_dssp             CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred             CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH
Confidence            754 6667778888999999988887666555554 68888999888 56642 33323 3467999999999 88754 


Q ss_pred             CCCCCCCCC-CCcEEEcccC--CCC-CCChhhccCCCCCCEEEccCCc-ccccCCcccCCCCCCcEEeccCCC-CCCcch
Q 045837          234 VPRSIGNMP-NVNEIILSNN--DLM-GCLPSEIGWLKKLTVFDASSNS-FYGSVPQSFSSLESIHRLVLSYNQ-LTGYVS  307 (527)
Q Consensus       234 ~~~~l~~l~-~L~~L~Ls~N--~l~-~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~  307 (527)
                      +...+..++ +|++|+|++|  .++ +.++..+..+++|++|+|++|. +++.....+..+.+|++|+|++|. +.....
T Consensus       186 ~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  265 (336)
T 2ast_B          186 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL  265 (336)
T ss_dssp             HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG
T ss_pred             HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH
Confidence            445577788 9999999999  454 3456677788999999999998 666666788888999999999994 443333


Q ss_pred             hhhhCCCCCcEEEecCcccCCCCCCCCCCC-CCCceecCCCCCCCCCCCC
Q 045837          308 EQICKLPNINNFTFSYNYFQGLGNECIPGS-KEGGVFDDTSNCLAQRPSQ  356 (527)
Q Consensus       308 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~  356 (527)
                      ..+.++++|++|++++| ++.   ..+..+ ..+..|++++|.+++....
T Consensus       266 ~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          266 LELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             GGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred             HHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCC
Confidence            46788899999999988 433   233334 3477788899998865433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=5.6e-22  Score=196.00  Aligned_cols=194  Identities=21%  Similarity=0.336  Sum_probs=144.5

Q ss_pred             CcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEE
Q 045837           98 NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYL  177 (527)
Q Consensus        98 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  177 (527)
                      .+.+|++|++++|.+... + .+..+++|++|+|++|++.+...  +.++.+|++|+|++|++++.  ..+..+.+|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L  112 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL  112 (308)
T ss_dssp             HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred             HcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence            467788888888888763 2 57778888888888888876543  78888888888888888753  357778888888


Q ss_pred             ecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCC
Q 045837          178 DLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC  257 (527)
Q Consensus       178 ~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  257 (527)
                      +|++|.+++ ++. +                      ....+|++|++++|.+.+...  +..+.+|++|+|++|.+++ 
T Consensus       113 ~l~~n~l~~-~~~-l----------------------~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-  165 (308)
T 1h6u_A          113 DLTSTQITD-VTP-L----------------------AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-  165 (308)
T ss_dssp             ECTTSCCCC-CGG-G----------------------TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-
T ss_pred             ECCCCCCCC-chh-h----------------------cCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-
Confidence            888888763 322 1                      122356667777776665432  7778888888888888874 


Q ss_pred             ChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCC
Q 045837          258 LPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGL  329 (527)
Q Consensus       258 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  329 (527)
                      ++. +..+.+|++|+|++|++++..+  +..+.+|++|+|++|++++..  .+..+++|++|++++|.+++.
T Consensus       166 ~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          166 LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred             Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence            433 7888888888888888875432  777888888888888888765  378888888888888888764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.87  E-value=5.7e-25  Score=229.84  Aligned_cols=255  Identities=15%  Similarity=0.089  Sum_probs=130.2

Q ss_pred             CcceEEEEEcCCCCcCCCCcccc-----CCCCCCCEEEccCCccccc----ccccccCCCCCcEEEeecCcCcccCCccc
Q 045837           98 NITVVAGIDLNGNDIAGYFPAEL-----GWLSDLALFHVNSNRFCGI----IPESLSNWKLIYEFDVSNNRLVGSFPNVC  168 (527)
Q Consensus        98 ~~~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  168 (527)
                      .+++|++|+|++|.+.+.....+     ....+|++|+|++|++++.    +...+..+.+|++|+|++|.+.+.....+
T Consensus       111 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  190 (461)
T 1z7x_W          111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVL  190 (461)
T ss_dssp             SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred             cCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHH
Confidence            34455555555555433211111     1233455555555555432    23334445555555555555543222222


Q ss_pred             c-----cCCcccEEecccCCCCCC----cchhhhc-cccchhhcccccccccccc-----cc-CCCCcceEeccCCcCCc
Q 045837          169 L-----SWTSLRYLDLRYNNFEGE----VPRELFK-MKLDAIFLNNNRFSSWIPE-----TI-GESTVSVVTFAHNNFSG  232 (527)
Q Consensus       169 ~-----~l~~L~~L~Ls~n~i~~~----~p~~~~~-~~L~~L~L~~n~l~~~~~~-----~~-~~~~L~~L~L~~n~l~~  232 (527)
                      .     .+.+|++|+|++|.+++.    +...+.. .+|++|++++|.+++....     .+ ...+|++|++++|.+++
T Consensus       191 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~  270 (461)
T 1z7x_W          191 CQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA  270 (461)
T ss_dssp             HHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             HHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH
Confidence            1     133555666666655532    1222222 4566666666655442111     11 12456666666666654


Q ss_pred             c----CCCCCCCCCCCcEEEcccCCCCCCChhhcc-----CCCCCCEEEccCCccccc----CCcccCCCCCCcEEeccC
Q 045837          233 C----VPRSIGNMPNVNEIILSNNDLMGCLPSEIG-----WLKKLTVFDASSNSFYGS----VPQSFSSLESIHRLVLSY  299 (527)
Q Consensus       233 ~----~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~  299 (527)
                      .    +...+..+.+|++|+|++|.+++.....+.     ...+|++|+|++|.+++.    ++..+..+.+|++|+|++
T Consensus       271 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~  350 (461)
T 1z7x_W          271 KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN  350 (461)
T ss_dssp             HHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCS
T ss_pred             HHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccC
Confidence            2    233344556666666666665432222221     124666666666666543    234445566777777777


Q ss_pred             CCCCCcchhhhhC-----CCCCcEEEecCcccCC----CCCCCCCCCCCCceecCCCCCCCC
Q 045837          300 NQLTGYVSEQICK-----LPNINNFTFSYNYFQG----LGNECIPGSKEGGVFDDTSNCLAQ  352 (527)
Q Consensus       300 N~l~~~~~~~l~~-----l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~  352 (527)
                      |.+++.....+..     ..+|++|++++|++++    .++..+..+++|++|++++|.|++
T Consensus       351 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          351 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             CccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            7776544333332     5577777777777764    344445566777777777777763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=2.1e-21  Score=185.97  Aligned_cols=179  Identities=17%  Similarity=0.159  Sum_probs=121.7

Q ss_pred             CCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccC-CCCcceEeccC
Q 045837          149 LIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIG-ESTVSVVTFAH  227 (527)
Q Consensus       149 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~  227 (527)
                      ..++++++++.++ .++..+.  .+|++|+|++|.+++.                       ....+. ..+|++|+|++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~-----------------------~~~~~~~l~~L~~L~L~~   68 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATL-----------------------SDATFRGLTKLTWLNLDY   68 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCC-----------------------CTTTTTTCTTCCEEECTT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCcc-----------------------CHhHhcCcccCCEEECCC
Confidence            3456666666666 3444333  4566666666666533                       222222 24567777777


Q ss_pred             CcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcch
Q 045837          228 NNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVS  307 (527)
Q Consensus       228 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~  307 (527)
                      |.+.+..+..|..+.+|++|+|++|.+++..+..|..+.+|++|+|++|++++..+..|..+.+|++|+|++|+|+++..
T Consensus        69 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  148 (251)
T 3m19_A           69 NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA  148 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence            77776666667777777777777777776656667777777777777777776555556777777777777777777666


Q ss_pred             hhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCC
Q 045837          308 EQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQR  353 (527)
Q Consensus       308 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  353 (527)
                      ..|.++++|++|+|++|+|++.....|..+.+|+.|++++|.++..
T Consensus       149 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            6677777777777777777777666777777777777777777654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=2.8e-23  Score=210.28  Aligned_cols=231  Identities=14%  Similarity=0.138  Sum_probs=180.6

Q ss_pred             cceEEEEEcCCCCcCCCCc----cccCCCC-CCCEEEccCCcccccccccccCC-----CCCcEEEeecCcCcccCCcc-
Q 045837           99 ITVVAGIDLNGNDIAGYFP----AELGWLS-DLALFHVNSNRFCGIIPESLSNW-----KLIYEFDVSNNRLVGSFPNV-  167 (527)
Q Consensus        99 ~~~L~~L~L~~n~l~~~~~----~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~-  167 (527)
                      ..+|++|+|++|.+.+...    ..|..++ +|++|+|++|+|.+.....|..+     .+|++|+|++|++++..... 
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            3559999999999988766    6778888 89999999999998766666664     89999999999998665554 


Q ss_pred             ---cccC-CcccEEecccCCCCCCcchhhhc------cccchhhcccccccccccccc----C-C-CCcceEeccCCcCC
Q 045837          168 ---CLSW-TSLRYLDLRYNNFEGEVPRELFK------MKLDAIFLNNNRFSSWIPETI----G-E-STVSVVTFAHNNFS  231 (527)
Q Consensus       168 ---~~~l-~~L~~L~Ls~n~i~~~~p~~~~~------~~L~~L~L~~n~l~~~~~~~~----~-~-~~L~~L~L~~n~l~  231 (527)
                         +..+ .+|++|+|++|.+++.....+..      .+|++|+|++|.+++.....+    . . .+|++|+|++|++.
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence               3344 89999999999998655444432      489999999999986444333    2 2 37999999999998


Q ss_pred             ccCCCCC----CCC-CCCcEEEcccCCCCCC----ChhhccC-CCCCCEEEccCCcccccCC----cccCCCCCCcEEec
Q 045837          232 GCVPRSI----GNM-PNVNEIILSNNDLMGC----LPSEIGW-LKKLTVFDASSNSFYGSVP----QSFSSLESIHRLVL  297 (527)
Q Consensus       232 ~~~~~~l----~~l-~~L~~L~Ls~N~l~~~----~p~~~~~-l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~L  297 (527)
                      +.....+    ..+ .+|++|+|++|.+++.    ++..+.. .++|++|||++|.+++...    ..+..+.+|++|+|
T Consensus       181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L  260 (362)
T 3goz_A          181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL  260 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred             hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence            7654333    344 5999999999999863    4445555 4699999999999986433    34577899999999


Q ss_pred             cCCCCCCcch-------hhhhCCCCCcEEEecCcccCCC
Q 045837          298 SYNQLTGYVS-------EQICKLPNINNFTFSYNYFQGL  329 (527)
Q Consensus       298 s~N~l~~~~~-------~~l~~l~~L~~L~Ls~N~l~~~  329 (527)
                      ++|.+.++..       ..+.++.+|++||+++|++.+.
T Consensus       261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             ccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            9999665433       3566788899999999998765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.86  E-value=3.3e-24  Score=224.06  Aligned_cols=252  Identities=12%  Similarity=0.087  Sum_probs=188.8

Q ss_pred             eEEEEEcCCCCcCC----CCccccCCCCCCCEEEccCCcccccccccc-----cCCCCCcEEEeecCcCcccC----Ccc
Q 045837          101 VVAGIDLNGNDIAG----YFPAELGWLSDLALFHVNSNRFCGIIPESL-----SNWKLIYEFDVSNNRLVGSF----PNV  167 (527)
Q Consensus       101 ~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~----~~~  167 (527)
                      +|++|+|++|.+..    .+...+..+++|++|+|++|.+.+.....+     ..+.+|++|+|++|++++..    ...
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            68999999999874    456778889999999999999875433322     23567999999999988533    455


Q ss_pred             cccCCcccEEecccCCCCCCcchhhhc------cccchhhcccccccccc----cccc-CCCCcceEeccCCcCCccC--
Q 045837          168 CLSWTSLRYLDLRYNNFEGEVPRELFK------MKLDAIFLNNNRFSSWI----PETI-GESTVSVVTFAHNNFSGCV--  234 (527)
Q Consensus       168 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~------~~L~~L~L~~n~l~~~~----~~~~-~~~~L~~L~L~~n~l~~~~--  234 (527)
                      +..+.+|++|+|++|.+++.....+..      .+|++|++++|.+++..    ...+ ...+|++|++++|.+.+..  
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            667789999999999987443333322      48999999999988742    2222 3467999999999887642  


Q ss_pred             ---CCCCCCCCCCcEEEcccCCCCCC----ChhhccCCCCCCEEEccCCcccccCCcccC-----CCCCCcEEeccCCCC
Q 045837          235 ---PRSIGNMPNVNEIILSNNDLMGC----LPSEIGWLKKLTVFDASSNSFYGSVPQSFS-----SLESIHRLVLSYNQL  302 (527)
Q Consensus       235 ---~~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~Ls~N~l  302 (527)
                         ...+..+.+|++|+|++|.+++.    ++..+..+++|++|+|++|.+++.....+.     ...+|++|+|++|.+
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  325 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF  325 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence               12233578999999999999853    566777899999999999998754333332     236999999999999


Q ss_pred             CCc----chhhhhCCCCCcEEEecCcccCCCCCCCCC-----CCCCCceecCCCCCCCC
Q 045837          303 TGY----VSEQICKLPNINNFTFSYNYFQGLGNECIP-----GSKEGGVFDDTSNCLAQ  352 (527)
Q Consensus       303 ~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~l~~N~l~~  352 (527)
                      ++.    +...+..+++|++|++++|++++.....+.     ...+|++|++++|.|++
T Consensus       326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~  384 (461)
T 1z7x_W          326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  384 (461)
T ss_dssp             BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence            876    456677889999999999998765333222     25799999999999983

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=3.9e-21  Score=182.73  Aligned_cols=183  Identities=12%  Similarity=0.170  Sum_probs=154.1

Q ss_pred             CCcEEEeecCcCcccCCcccccCCcccEEecccCC-CCCCcchhhhccccchhhccccccccccccccCCCCcceEeccC
Q 045837          149 LIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNN-FEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAH  227 (527)
Q Consensus       149 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~  227 (527)
                      +|++|+|++|++++.....|.++.+|++|+|++|. ++ .++...+                     .+..+|++|++++
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f---------------------~~l~~L~~L~l~~   89 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSF---------------------YNLSKVTHIEIRN   89 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTE---------------------ESCTTCCEEEEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHc---------------------CCCcCCcEEECCC
Confidence            79999999999997777789999999999999997 76 4432211                     1234688888887


Q ss_pred             -CcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCC---EEEccCC-cccccCCcccCCCCCCc-EEeccCCC
Q 045837          228 -NNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLT---VFDASSN-SFYGSVPQSFSSLESIH-RLVLSYNQ  301 (527)
Q Consensus       228 -n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~---~L~Ls~n-~l~~~~p~~~~~l~~L~-~L~Ls~N~  301 (527)
                       |++.+.....|.++.+|++|++++|.+++ ++. +..+.+|+   +|++++| ++++.....|.++.+|+ +|+|++|+
T Consensus        90 ~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~  167 (239)
T 2xwt_C           90 TRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG  167 (239)
T ss_dssp             ETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred             CCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence             88887666788999999999999999995 665 88888888   9999999 99877777799999999 99999999


Q ss_pred             CCCcchhhhhCCCCCcEEEecCcc-cCCCCCCCCCCC-CCCceecCCCCCCCCCCCC
Q 045837          302 LTGYVSEQICKLPNINNFTFSYNY-FQGLGNECIPGS-KEGGVFDDTSNCLAQRPSQ  356 (527)
Q Consensus       302 l~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~  356 (527)
                      ++.+....+.. .+|++|++++|+ ++++....|.++ .+|+.|++++|.|++++..
T Consensus       168 l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~  223 (239)
T 2xwt_C          168 FTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK  223 (239)
T ss_dssp             CCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred             CcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence            99554444544 899999999995 998888889999 9999999999999988765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=3e-21  Score=190.79  Aligned_cols=173  Identities=14%  Similarity=0.294  Sum_probs=128.9

Q ss_pred             CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCccc
Q 045837           96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLR  175 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  175 (527)
                      +..+++|+.|+|++|.+.+...  +..+++|++|+|++|++.+.  ..+.++.+|++|+|++|++++. + .+..+.+|+
T Consensus        59 ~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~  132 (308)
T 1h6u_A           59 VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQ  132 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCC
T ss_pred             hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCC
Confidence            4567899999999999988644  99999999999999999865  3689999999999999999864 3 488999999


Q ss_pred             EEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCC
Q 045837          176 YLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLM  255 (527)
Q Consensus       176 ~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  255 (527)
                      +|+|++|.+++ ++. +.                      ...+|++|++++|++.+...  +..+.+|++|+|++|.++
T Consensus       133 ~L~l~~n~l~~-~~~-l~----------------------~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          133 VLYLDLNQITN-ISP-LA----------------------GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             EEECCSSCCCC-CGG-GG----------------------GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EEECCCCccCc-Ccc-cc----------------------CCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence            99999999983 332 11                      12345556666665554322  666777777777777776


Q ss_pred             CCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCC
Q 045837          256 GCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTG  304 (527)
Q Consensus       256 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  304 (527)
                      +. +. +..+.+|++|+|++|++++..  .+..+.+|++|+|++|.+++
T Consensus       187 ~~-~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          187 DI-SP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CC-GG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             cC-hh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            43 22 667777777777777776543  36677777777777777764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=3e-22  Score=200.28  Aligned_cols=233  Identities=13%  Similarity=0.077  Sum_probs=184.3

Q ss_pred             ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCccccc-ccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEe
Q 045837          100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGI-IPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLD  178 (527)
Q Consensus       100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  178 (527)
                      .+++.|++++|.+.+.... +..+.+|++|+|++|.+.+. ++..+.++++|++|+|++|.+++..+..+..+.+|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            6789999999999887654 56799999999999999865 777889999999999999999877777888899999999


Q ss_pred             cccC-CCCCC-cchhhhc-cccchhhcccc-ccccc-ccccc-CCC-CcceEeccCC--cCC-ccCCCCCCCCCCCcEEE
Q 045837          179 LRYN-NFEGE-VPRELFK-MKLDAIFLNNN-RFSSW-IPETI-GES-TVSVVTFAHN--NFS-GCVPRSIGNMPNVNEII  248 (527)
Q Consensus       179 Ls~n-~i~~~-~p~~~~~-~~L~~L~L~~n-~l~~~-~~~~~-~~~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~  248 (527)
                      |++| .+++. ++..+.. .+|++|++++| .+++. +...+ ... +|++|++++|  .++ +.++..+..+++|++|+
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~  228 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  228 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence            9999 67642 4433333 68999999999 88764 23333 345 8999999999  455 34445667889999999


Q ss_pred             cccCC-CCCCChhhccCCCCCCEEEccCCc-ccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCccc
Q 045837          249 LSNND-LMGCLPSEIGWLKKLTVFDASSNS-FYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYF  326 (527)
Q Consensus       249 Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l  326 (527)
                      |++|. +++.....+..+++|++|+|++|. +....-..+..+++|++|+|++| ++...-..+..  +|..|++++|++
T Consensus       229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~--~l~~L~l~~n~l  305 (336)
T 2ast_B          229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKE--ALPHLQINCSHF  305 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHH--HSTTSEESCCCS
T ss_pred             CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHh--hCcceEEecccC
Confidence            99999 776777789999999999999995 43332236788999999999999 66543334432  355667999999


Q ss_pred             CCCCCCCCCC
Q 045837          327 QGLGNECIPG  336 (527)
Q Consensus       327 ~~~~~~~~~~  336 (527)
                      ++..+..+..
T Consensus       306 ~~~~~~~~~~  315 (336)
T 2ast_B          306 TTIARPTIGN  315 (336)
T ss_dssp             CCTTCSSCSS
T ss_pred             ccccCCcccc
Confidence            9988765553

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.85  E-value=3.9e-21  Score=204.20  Aligned_cols=198  Identities=21%  Similarity=0.378  Sum_probs=157.8

Q ss_pred             cccce-eeCCCCCCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcc
Q 045837           84 SYYGV-FCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVG  162 (527)
Q Consensus        84 ~~~gv-~c~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~  162 (527)
                      .|.++ .|.       ..+|+.|+|++|++.+ ++..+  +++|++|+|++|+|+ .++   ..+.+|++|+|++|+|++
T Consensus        49 ~~~~l~~C~-------~~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~  114 (571)
T 3cvr_A           49 AVSLLKECL-------INQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST  114 (571)
T ss_dssp             HHHHHHHHH-------HTTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC
T ss_pred             hhhhccccc-------cCCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC
Confidence            58888 673       2479999999999988 66555  378999999999999 455   457899999999999996


Q ss_pred             cCCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCC
Q 045837          163 SFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMP  242 (527)
Q Consensus       163 ~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~  242 (527)
                       ++. +.+  +|++|+|++|.|++ ++.  ...+|++|+|++|.+++ ++.  ...+|++|+|++|.+++ ++. |.  .
T Consensus       115 -ip~-l~~--~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-lp~-l~--~  180 (571)
T 3cvr_A          115 -LPE-LPA--SLKHLDVDNNQLTM-LPE--LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-LPE-LP--E  180 (571)
T ss_dssp             -CCC-CCT--TCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC-CC--T
T ss_pred             -cch-hhc--CCCEEECCCCcCCC-CCC--cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-cch-hh--C
Confidence             666 554  99999999999985 666  45789999999999987 333  44578999999999886 555 55  7


Q ss_pred             CCcEEEcccCCCCCCChhhccCCCCC-------CEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCC
Q 045837          243 NVNEIILSNNDLMGCLPSEIGWLKKL-------TVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLP  314 (527)
Q Consensus       243 ~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  314 (527)
                      +|++|+|++|.|+ .++. |..  +|       ++|+|++|+|+ .++..+..+.+|+.|+|++|.|++.++..+..+.
T Consensus       181 ~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          181 SLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             TCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             CCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            8999999999988 6665 544  67       89999999988 5777777788999999999999888887776643

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.84  E-value=6.2e-20  Score=197.26  Aligned_cols=207  Identities=20%  Similarity=0.261  Sum_probs=152.0

Q ss_pred             CcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEE
Q 045837           98 NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYL  177 (527)
Q Consensus        98 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  177 (527)
                      .+++|++|+|++|.+++ ++.   .+.+|++|+|++|+|+++ +.   .+.+|++|+|++|++++ ++..   +.+|++|
T Consensus        79 ~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L  146 (622)
T 3g06_A           79 LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQEL  146 (622)
T ss_dssp             CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred             cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEE
Confidence            56889999999999986 443   678999999999999864 32   56789999999999884 4433   4788888


Q ss_pred             ecccCCCCCCcchhhhccccchhhcccccccccc-------------------ccccCCCCcceEeccCCcCCccCCCCC
Q 045837          178 DLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWI-------------------PETIGESTVSVVTFAHNNFSGCVPRSI  238 (527)
Q Consensus       178 ~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~-------------------~~~~~~~~L~~L~L~~n~l~~~~~~~l  238 (527)
                      +|++|.++ .++..  ..+|+.|++++|.+++..                   +..  ..+|++|++++|.+.. ++.  
T Consensus       147 ~Ls~N~l~-~l~~~--~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~-l~~--  218 (622)
T 3g06_A          147 SVSDNQLA-SLPAL--PSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTS-LPA--  218 (622)
T ss_dssp             ECCSSCCS-CCCCC--CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSS-CCC--
T ss_pred             ECcCCcCC-CcCCc--cCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccc-cCC--
Confidence            88888887 34332  134555555555554421                   111  1345555555555542 221  


Q ss_pred             CCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcE
Q 045837          239 GNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINN  318 (527)
Q Consensus       239 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  318 (527)
                       .+.+|++|+|++|.|++ ++   ..+.+|++|+|++|+|+ .++.   .+.+|++|+|++|+|+ .++..+.++++|++
T Consensus       219 -~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~  288 (622)
T 3g06_A          219 -LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETT  288 (622)
T ss_dssp             -CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCE
T ss_pred             -CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCE
Confidence             23689999999999984 55   55789999999999998 4554   5689999999999999 56788999999999


Q ss_pred             EEecCcccCCCCCCCC
Q 045837          319 FTFSYNYFQGLGNECI  334 (527)
Q Consensus       319 L~Ls~N~l~~~~~~~~  334 (527)
                      |+|++|.|++..+..+
T Consensus       289 L~L~~N~l~~~~~~~l  304 (622)
T 3g06_A          289 VNLEGNPLSERTLQAL  304 (622)
T ss_dssp             EECCSCCCCHHHHHHH
T ss_pred             EEecCCCCCCcCHHHH
Confidence            9999999988665543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=1.1e-20  Score=175.55  Aligned_cols=162  Identities=17%  Similarity=0.218  Sum_probs=99.8

Q ss_pred             CCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhc
Q 045837          123 LSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFL  202 (527)
Q Consensus       123 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L  202 (527)
                      ..+|++|+|++|+|.+.....|.++.+|++|+|++|++++.....|..+.+|++|+|++|.++ .++.            
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~------------   93 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPN------------   93 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT------------
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCH------------
Confidence            457888999988888777777888888999999999888666666778888888888888776 2211            


Q ss_pred             cccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccC
Q 045837          203 NNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSV  282 (527)
Q Consensus       203 ~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~  282 (527)
                                                       ..|.++.+|++|+|++|.+++..+..|..+.+|++|+|++|++++..
T Consensus        94 ---------------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  140 (208)
T 2o6s_A           94 ---------------------------------GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP  140 (208)
T ss_dssp             ---------------------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             ---------------------------------hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC
Confidence                                             12334445555555555555333334455555555555555555444


Q ss_pred             CcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCC
Q 045837          283 PQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGS  337 (527)
Q Consensus       283 p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l  337 (527)
                      ...|..+.+|++|+|++|.+.+       .+++|++|+++.|+++|.++..+..+
T Consensus       141 ~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          141 DGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             TTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             HHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence            3345555555555555554442       23345555555565555555544433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=1e-20  Score=187.15  Aligned_cols=225  Identities=15%  Similarity=0.160  Sum_probs=157.8

Q ss_pred             CCCEEEccCCcccccccc---cccCCCCCcEEEeecCcCcccCCccc--ccCCcccEEecccCCCCCCcchhhhccccch
Q 045837          125 DLALFHVNSNRFCGIIPE---SLSNWKLIYEFDVSNNRLVGSFPNVC--LSWTSLRYLDLRYNNFEGEVPRELFKMKLDA  199 (527)
Q Consensus       125 ~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~  199 (527)
                      .++.|.+.++.+....-.   .+..+.+|++|+|++|.+.+..+..+  ..+.+|++|+|++|.+++..+..      ..
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~------~~  138 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL------AE  138 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH------HH
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh------HH
Confidence            466777777666432110   11223557777777777776666666  66777777777777776422210      00


Q ss_pred             hhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCC--C--hhhccCCCCCCEEEccC
Q 045837          200 IFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC--L--PSEIGWLKKLTVFDASS  275 (527)
Q Consensus       200 L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~--~--p~~~~~l~~L~~L~Ls~  275 (527)
                      +            ......+|++|+|++|++.+..+..|+.+.+|++|+|++|++.+.  +  ...++.+.+|++|+|++
T Consensus       139 ~------------~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~  206 (310)
T 4glp_A          139 L------------QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN  206 (310)
T ss_dssp             H------------HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS
T ss_pred             H------------HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC
Confidence            0            011345799999999999888888999999999999999998642  2  22346889999999999


Q ss_pred             CcccccCCc----ccCCCCCCcEEeccCCCCCCcchhhhhCC---CCCcEEEecCcccCCCCCCCCCCCCCCceecCCCC
Q 045837          276 NSFYGSVPQ----SFSSLESIHRLVLSYNQLTGYVSEQICKL---PNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSN  348 (527)
Q Consensus       276 n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  348 (527)
                      |+++. ++.    .+..+.+|++|+|++|+|++..+..+..+   ++|++|+|++|+|+.+ +..+.  .+|+.|++++|
T Consensus       207 N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~--~~L~~L~Ls~N  282 (310)
T 4glp_A          207 TGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGLP--AKLRVLDLSSN  282 (310)
T ss_dssp             SCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCCC--SCCSCEECCSC
T ss_pred             CCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhhc--CCCCEEECCCC
Confidence            99973 222    25678999999999999999877777766   6999999999999965 54443  79999999999


Q ss_pred             CCCCCCCC--CCCCcccccccCCCC
Q 045837          349 CLAQRPSQ--KWATTCSPVVSNPVD  371 (527)
Q Consensus       349 ~l~~~~~~--~~~~~~~~~~~np~~  371 (527)
                      .|++++..  ...-....+.+|++.
T Consensus       283 ~l~~~~~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          283 RLNRAPQPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CCCSCCCTTSCCCCSCEECSSTTTS
T ss_pred             cCCCCchhhhCCCccEEECcCCCCC
Confidence            99986531  112223345566554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=4.8e-20  Score=185.53  Aligned_cols=237  Identities=14%  Similarity=0.117  Sum_probs=161.5

Q ss_pred             ccccceeeCCCCC----CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCccccccc-ccccCCCCCcE-EEee
Q 045837           83 CSYYGVFCAPAPD----NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIP-ESLSNWKLIYE-FDVS  156 (527)
Q Consensus        83 c~~~gv~c~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~-L~Ls  156 (527)
                      |.+..|.|.....    ..-..++++|+|++|+|+.+....|.++++|++|+|++|+|.+.++ .+|.++.+|++ ++++
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            6677778854221    0123578899999999987666678999999999999999866544 56788888765 5667


Q ss_pred             cCcCcccCCcccccCCcccEEecccCCCCCCcchhhhc--cccchhhccc-cccccccccccCC--CCcceEeccCCcCC
Q 045837          157 NNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNN-NRFSSWIPETIGE--STVSVVTFAHNNFS  231 (527)
Q Consensus       157 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~--~~L~~L~L~~-n~l~~~~~~~~~~--~~L~~L~L~~n~l~  231 (527)
                      +|+++...++.|..+.+|++|++++|.++ .++...+.  .++..|++.+ +++.......+..  ..+++|+|++|+|.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             CCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            78898777888889999999999999988 44433322  4666777754 4555544444433  24778888888887


Q ss_pred             ccCCCCCCCCCCCcEEEccc-CCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhh
Q 045837          232 GCVPRSIGNMPNVNEIILSN-NDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQI  310 (527)
Q Consensus       232 ~~~~~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l  310 (527)
                      .. +..+....+|++|++++ |.++..-...|.++++|++|||++|+|+..-...   +.+|++|.+.++.--..++ .+
T Consensus       168 ~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l  242 (350)
T 4ay9_X          168 EI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TL  242 (350)
T ss_dssp             EE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CT
T ss_pred             CC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cc
Confidence            54 34444556788888875 5565333345788888888888888887433222   4456666655543333444 36


Q ss_pred             hCCCCCcEEEecCcc
Q 045837          311 CKLPNINNFTFSYNY  325 (527)
Q Consensus       311 ~~l~~L~~L~Ls~N~  325 (527)
                      .++.+|+++++.++.
T Consensus       243 ~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          243 EKLVALMEASLTYPS  257 (350)
T ss_dssp             TTCCSCCEEECSCHH
T ss_pred             hhCcChhhCcCCCCc
Confidence            778888888887653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=6.8e-20  Score=170.21  Aligned_cols=182  Identities=16%  Similarity=0.154  Sum_probs=129.3

Q ss_pred             CCccccceeeCCCCC----CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEee
Q 045837           81 DVCSYYGVFCAPAPD----NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVS  156 (527)
Q Consensus        81 ~~c~~~gv~c~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  156 (527)
                      ..|.|.++.|.....    .....+|++|+|++|++.+.....|.++++|++|+|++|+|++.....|.++.+|++|+|+
T Consensus         5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A            5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence            347788888864321    1234567888888888877666667788888888888888887666667778888888888


Q ss_pred             cCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCC
Q 045837          157 NNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPR  236 (527)
Q Consensus       157 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  236 (527)
                      +|++++.....|..+.+|++|+|++|.+++                                              ....
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~----------------------------------------------~~~~  118 (208)
T 2o6s_A           85 TNQLQSLPNGVFDKLTQLKELALNTNQLQS----------------------------------------------LPDG  118 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCC----------------------------------------------CCTT
T ss_pred             CCcCCccCHhHhcCccCCCEEEcCCCcCcc----------------------------------------------cCHh
Confidence            888876655566777777777777776651                                              1122


Q ss_pred             CCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCC
Q 045837          237 SIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPN  315 (527)
Q Consensus       237 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  315 (527)
                      .|..+.+|++|+|++|.+++.....+..+.+|++|+|++|.+.+       .+.+|++|+++.|+++|.++.+++.+..
T Consensus       119 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          119 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             HhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence            35566778888888888876555567778888888888886653       3457788888888888887777765543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=7.6e-20  Score=184.07  Aligned_cols=237  Identities=11%  Similarity=0.049  Sum_probs=177.9

Q ss_pred             EEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCC-cccccCCcccE-Eecc
Q 045837          103 AGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFP-NVCLSWTSLRY-LDLR  180 (527)
Q Consensus       103 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~-L~Ls  180 (527)
                      ++++.++++++. +|..+  .++|++|+|++|+|+.+..++|.++.+|++|+|++|++.+.++ ..|.++.+|++ ++++
T Consensus        12 ~~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            467888988876 55555  3689999999999997777789999999999999999876554 46788888765 6677


Q ss_pred             cCCCCCCcchh-hhc-cccchhhcccccccccccccc-CCCCcceEeccC-CcCCccCCCCCCCC-CCCcEEEcccCCCC
Q 045837          181 YNNFEGEVPRE-LFK-MKLDAIFLNNNRFSSWIPETI-GESTVSVVTFAH-NNFSGCVPRSIGNM-PNVNEIILSNNDLM  255 (527)
Q Consensus       181 ~n~i~~~~p~~-~~~-~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~L~~-n~l~~~~~~~l~~l-~~L~~L~Ls~N~l~  255 (527)
                      +|+++ .++.. +.. .+|++|++++|++.......+ ...++..|++.+ +++.......|..+ ..+++|+|++|+|+
T Consensus        89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             CCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            89998 55444 433 699999999999987655444 345678888865 56665555566666 46899999999998


Q ss_pred             CCChhhccCCCCCCEEEccC-CcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCc-ccCCCCCCC
Q 045837          256 GCLPSEIGWLKKLTVFDASS-NSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYN-YFQGLGNEC  333 (527)
Q Consensus       256 ~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~  333 (527)
                       .++.......+|++|++++ |.++..-...|.++.+|++|||++|+|+.+....+   .+|++|.+.++ .++.+ + .
T Consensus       168 -~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~l-P-~  241 (350)
T 4ay9_X          168 -EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKL-P-T  241 (350)
T ss_dssp             -EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCC-C-C
T ss_pred             -CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcC-C-C
Confidence             4554555567899999986 55654434568999999999999999997655444   45666665554 34443 4 4


Q ss_pred             CCCCCCCceecCCCCC
Q 045837          334 IPGSKEGGVFDDTSNC  349 (527)
Q Consensus       334 ~~~l~~L~~L~l~~N~  349 (527)
                      +..+.+|+.++++++.
T Consensus       242 l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          242 LEKLVALMEASLTYPS  257 (350)
T ss_dssp             TTTCCSCCEEECSCHH
T ss_pred             chhCcChhhCcCCCCc
Confidence            7788999999997654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.81  E-value=2.9e-20  Score=182.16  Aligned_cols=173  Identities=17%  Similarity=0.286  Sum_probs=106.6

Q ss_pred             CCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchh
Q 045837          121 GWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAI  200 (527)
Q Consensus       121 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L  200 (527)
                      ..+.+|++|++++|.+...  ..+..+.+|++|+|++|++++...  +..+.+|++|+|++|.+++ ++. +        
T Consensus        43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l--------  108 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS-L--------  108 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG-G--------
T ss_pred             hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh-h--------
Confidence            3455566666666665533  235556666666666666654322  5556666666666666552 211 1        


Q ss_pred             hccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccc
Q 045837          201 FLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYG  280 (527)
Q Consensus       201 ~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  280 (527)
                                    ....+|++|++++|++.+.  ..+..+.+|++|++++|.+++.  ..+..+++|++|+|++|++++
T Consensus       109 --------------~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A          109 --------------KDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  170 (291)
T ss_dssp             --------------TTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred             --------------ccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence                          0112344555555544432  3456667777777777777743  467777777888888777775


Q ss_pred             cCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCC
Q 045837          281 SVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGL  329 (527)
Q Consensus       281 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  329 (527)
                      ..+  +..+.+|++|+|++|.|++.  ..+..+++|++|++++|.++..
T Consensus       171 ~~~--l~~l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          171 IVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEECC
T ss_pred             chh--hcCCCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcccCC
Confidence            433  77777788888888877764  2477777888888888877664

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=2.8e-19  Score=189.97  Aligned_cols=187  Identities=22%  Similarity=0.315  Sum_probs=153.6

Q ss_pred             CCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhcc
Q 045837          124 SDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLN  203 (527)
Q Consensus       124 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~  203 (527)
                      .+|++|+|++|+|++ ++..+  +.+|++|+|++|+|+ .++   ..+.+|++|+|++|.|++ ++. +.. +|++|+|+
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~-~L~~L~Ls  128 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA-SLKHLDVD  128 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT-TCCEEECC
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc-CCCEEECC
Confidence            389999999999987 55544  378999999999999 555   447899999999999995 777 444 99999999


Q ss_pred             ccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCC
Q 045837          204 NNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVP  283 (527)
Q Consensus       204 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p  283 (527)
                      +|++++ ++.  ...+|++|+|++|.|++ ++.   .+.+|++|+|++|.|++ ++. |.  .+|++|+|++|+|+ .++
T Consensus       129 ~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp  196 (571)
T 3cvr_A          129 NNQLTM-LPE--LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP  196 (571)
T ss_dssp             SSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred             CCcCCC-CCC--cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence            999998 444  45679999999999996 444   57899999999999995 666 65  89999999999998 666


Q ss_pred             cccCCCCCC-------cEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCC
Q 045837          284 QSFSSLESI-------HRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPG  336 (527)
Q Consensus       284 ~~~~~l~~L-------~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~  336 (527)
                      . |..  +|       +.|+|++|+|+. ++..+..+++|++|+|++|.|++.++..+..
T Consensus       197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          197 A-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             C-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             h-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            6 554  77       999999999995 6777778999999999999998876655443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.81  E-value=6.6e-20  Score=196.76  Aligned_cols=192  Identities=16%  Similarity=0.251  Sum_probs=112.5

Q ss_pred             eEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecc
Q 045837          101 VVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLR  180 (527)
Q Consensus       101 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  180 (527)
                      .+..+.|.++.+.+..  .+..+.+|++|++++|.|... + .|..+.+|++|+|++|++.+..+  +..+.+|++|+|+
T Consensus        22 ~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred             HHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence            3444455555554432  244566666777777666643 2 46666777777777776664432  6666677777777


Q ss_pred             cCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChh
Q 045837          181 YNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPS  260 (527)
Q Consensus       181 ~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~  260 (527)
                      +|.+++ ++. +.                      ...+|++|+|++|.+.+.  ..+..+.+|++|+|++|.+++.  .
T Consensus        96 ~N~l~~-l~~-l~----------------------~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~  147 (605)
T 1m9s_A           96 ENKIKD-LSS-LK----------------------DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T  147 (605)
T ss_dssp             SSCCCC-CTT-ST----------------------TCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--G
T ss_pred             CCCCCC-Chh-hc----------------------cCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--h
Confidence            776652 221 11                      122345555555555432  2355666666666666666643  4


Q ss_pred             hccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCC
Q 045837          261 EIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLG  330 (527)
Q Consensus       261 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~  330 (527)
                      .+..+.+|+.|+|++|.|++..+  +..+.+|+.|+|++|.|++.  ..+..+.+|+.|+|++|.+.+..
T Consensus       148 ~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          148 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred             hhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence            56666667777777776665443  66666777777777766654  34666667777777777666543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=8.3e-19  Score=165.46  Aligned_cols=164  Identities=21%  Similarity=0.224  Sum_probs=119.9

Q ss_pred             CCCCCCCCccccceeeCCCCCCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEE
Q 045837           75 GNWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFD  154 (527)
Q Consensus        75 ~~w~~~~~c~~~gv~c~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  154 (527)
                      ..|.+...|.|.++.|..                 +++.. ++..+  ..+|++|+|++|+|.++.+..|.++.+|++|+
T Consensus        11 ~~~~~~~~Cs~~~v~c~~-----------------~~l~~-ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   70 (229)
T 3e6j_A           11 AACPSQCSCSGTTVDCRS-----------------KRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELY   70 (229)
T ss_dssp             CCCCTTCEEETTEEECTT-----------------SCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccCCCCCEEeCCEeEccC-----------------CCcCc-cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEE
Confidence            356788899999888842                 23332 33333  27888999999998888788888888888888


Q ss_pred             eecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccC
Q 045837          155 VSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCV  234 (527)
Q Consensus       155 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~  234 (527)
                      |++|+|.......|..+.+|++|+|++|.|++                                              ..
T Consensus        71 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~----------------------------------------------l~  104 (229)
T 3e6j_A           71 LGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV----------------------------------------------LP  104 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC----------------------------------------------CC
T ss_pred             CCCCCCCCcChhhcccCCCcCEEECCCCcCCc----------------------------------------------cC
Confidence            88888875555666777778887777777651                                              22


Q ss_pred             CCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCc
Q 045837          235 PRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGY  305 (527)
Q Consensus       235 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  305 (527)
                      ...|..+.+|++|+|++|.|+ .++..+..+.+|++|+|++|+|++.....|..+.+|++|+|++|.+.+.
T Consensus       105 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          105 SAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             TTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             hhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            234556777888888888887 6677777788888888888888766556677778888888888877754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.79  E-value=5.2e-19  Score=178.69  Aligned_cols=176  Identities=22%  Similarity=0.240  Sum_probs=110.2

Q ss_pred             EEEEcCCCCcCCCCccccCCCCCCCEEEccCCccccccccccc-CCCCCcEEEeecCcCcccCCcccccCCcccEEeccc
Q 045837          103 AGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLS-NWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRY  181 (527)
Q Consensus       103 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  181 (527)
                      +.++++++++.. +|..+.  ..|++|+|++|+|++.....|. ++.+|++|+|++|+|++..+..|.++.+|++|+|++
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            367788888876 454443  4689999999999988777777 899999999999999877777888888999999988


Q ss_pred             CCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhh
Q 045837          182 NNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSE  261 (527)
Q Consensus       182 n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~  261 (527)
                      |+|+ .++...+                     .+..+|++|+|++|+|.+..+..|.++.+|++|+|++|.|++.....
T Consensus        98 N~l~-~~~~~~~---------------------~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~  155 (361)
T 2xot_A           98 NHLH-TLDEFLF---------------------SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL  155 (361)
T ss_dssp             SCCC-EECTTTT---------------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred             CcCC-cCCHHHh---------------------CCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHH
Confidence            8886 2221110                     01134555555555555544555566666666666666665332222


Q ss_pred             c---cCCCCCCEEEccCCcccccCCcccCCCCC--CcEEeccCCCCC
Q 045837          262 I---GWLKKLTVFDASSNSFYGSVPQSFSSLES--IHRLVLSYNQLT  303 (527)
Q Consensus       262 ~---~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~--L~~L~Ls~N~l~  303 (527)
                      |   ..+.+|++|||++|+|++.....+..+..  |+.|+|++|.+.
T Consensus       156 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             TC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             hcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            3   34555555555555555333333444443  245555555554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=7.8e-19  Score=164.57  Aligned_cols=151  Identities=21%  Similarity=0.256  Sum_probs=71.9

Q ss_pred             cEEecccCCCCCCcchhhhccccchhhcccccccccccc-cc-CCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccC
Q 045837          175 RYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPE-TI-GESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNN  252 (527)
Q Consensus       175 ~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~-~~-~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N  252 (527)
                      +.+++++|.++ .++..+. ..+++|+|++|++++.... .+ ...+|++|+|++|++.+.....|.++.+|++|+|++|
T Consensus        14 ~~l~~s~n~l~-~iP~~~~-~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP-QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC-TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcc-cCccCCC-CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            46777777766 4554322 2344555555555544221 12 2233444444444444444444444444444444444


Q ss_pred             CCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccC
Q 045837          253 DLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQ  327 (527)
Q Consensus       253 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  327 (527)
                      .+++..+..|.++.+|++|+|++|+|++..+..|.++.+|++|+|++|+|++..+..|..+.+|++|+|++|.|.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            444444444444444444444444444444444444444444444444444444444444444444444444444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.79  E-value=9.2e-22  Score=209.89  Aligned_cols=204  Identities=18%  Similarity=0.202  Sum_probs=146.0

Q ss_pred             CCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCc-------------CcccCCcccccCCcccEEe-cccCCCCC
Q 045837          121 GWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNR-------------LVGSFPNVCLSWTSLRYLD-LRYNNFEG  186 (527)
Q Consensus       121 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-------------l~~~~~~~~~~l~~L~~L~-Ls~n~i~~  186 (527)
                      ..+.+|+.|+|++|++. .++..++++.+|++|++++|.             +.+..+..+..+.+|+.|+ ++.|.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            44566666666666665 456666666666666665543             2333334444455555555 4443321 


Q ss_pred             CcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCC
Q 045837          187 EVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLK  266 (527)
Q Consensus       187 ~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  266 (527)
                               .|+.+.+.+|.++...     ...|++|+|++|++++ ++. |+.+.+|++|+|++|.|+ .+|..|+++.
T Consensus       424 ---------~L~~l~l~~n~i~~l~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  486 (567)
T 1dce_A          424 ---------DLRSKFLLENSVLKME-----YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALR  486 (567)
T ss_dssp             ---------HHHHHHHHHHHHHHHH-----HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred             ---------hhhhhhhhcccccccC-----ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCC
Confidence                     3445555555554422     1358899999999986 454 889999999999999998 7888999999


Q ss_pred             CCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcc-hhhhhCCCCCcEEEecCcccCCCCCCC---CCCCCCCce
Q 045837          267 KLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYV-SEQICKLPNINNFTFSYNYFQGLGNEC---IPGSKEGGV  342 (527)
Q Consensus       267 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~  342 (527)
                      +|++|+|++|+|++ ++ .+..+.+|+.|+|++|+|++.. +..+.++++|++|+|++|.|++..+..   +..+++|+.
T Consensus       487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~  564 (567)
T 1dce_A          487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS  564 (567)
T ss_dssp             TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred             CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence            99999999999986 56 7889999999999999999887 888999999999999999998875532   223677777


Q ss_pred             ecC
Q 045837          343 FDD  345 (527)
Q Consensus       343 L~l  345 (527)
                      |++
T Consensus       565 L~l  567 (567)
T 1dce_A          565 ILT  567 (567)
T ss_dssp             EEC
T ss_pred             cCC
Confidence            754

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=9.1e-19  Score=164.13  Aligned_cols=134  Identities=18%  Similarity=0.197  Sum_probs=94.3

Q ss_pred             CcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEecc
Q 045837          219 TVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLS  298 (527)
Q Consensus       219 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  298 (527)
                      ++++|+|++|+|.+.....|..+.+|++|+|++|.+++..+..|.++.+|++|+|++|+|++.....|.++.+|++|+|+
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~  112 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN  112 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence            46666666666665555566777777777777777776666677777777777777777775544556667777777777


Q ss_pred             CCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCC
Q 045837          299 YNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQ  352 (527)
Q Consensus       299 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  352 (527)
                      +|+|++..+..|.++.+|++|+|++|+|+++....|..+.+|+.|++++|.+..
T Consensus       113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            777777666677777777777777777777766667777777777777777653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=3.1e-19  Score=180.33  Aligned_cols=174  Identities=17%  Similarity=0.176  Sum_probs=91.6

Q ss_pred             cEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhh-c-cccchhhccccccccccccccCC-CCcceEeccC
Q 045837          151 YEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELF-K-MKLDAIFLNNNRFSSWIPETIGE-STVSVVTFAH  227 (527)
Q Consensus       151 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~-~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~  227 (527)
                      +++++++++++ .++..+.  ..|++|+|++|.|++.....+. . .+|++|+|++|+|++.....+.. .+|++|+|++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            57888888887 4555443  4578888888888733322221 1 45555555555555544433322 3455555555


Q ss_pred             CcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCccc---CCCCCCcEEeccCCCCCC
Q 045837          228 NNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSF---SSLESIHRLVLSYNQLTG  304 (527)
Q Consensus       228 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~  304 (527)
                      |+|.+.....|.++.+|++|+|++|.|++..+..|.++.+|++|+|++|+|++.....|   ..+.+|++|+|++|+|++
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            55554444445555555555555555554444455555555555555555553222222   334555555555555554


Q ss_pred             cchhhhhCCCC--CcEEEecCcccC
Q 045837          305 YVSEQICKLPN--INNFTFSYNYFQ  327 (527)
Q Consensus       305 ~~~~~l~~l~~--L~~L~Ls~N~l~  327 (527)
                      +....+..+..  |+.|+|++|.+.
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCHHHhhhccHhhcceEEecCCCcc
Confidence            44444444444  244555555544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=8.6e-19  Score=171.59  Aligned_cols=193  Identities=16%  Similarity=0.194  Sum_probs=152.2

Q ss_pred             CCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhcccc
Q 045837          126 LALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNN  205 (527)
Q Consensus       126 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n  205 (527)
                      +..+.+..+.+.+..  .+..+.+|++|++++|.+...  ..+..+.+|++|+|++|.+++ +.. +             
T Consensus        26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~-~~~-l-------------   86 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD-IKP-L-------------   86 (291)
T ss_dssp             HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG-G-------------
T ss_pred             HHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCC-Ccc-c-------------
Confidence            334445555555432  345678899999999988744  347788899999999998873 222 1             


Q ss_pred             ccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcc
Q 045837          206 RFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQS  285 (527)
Q Consensus       206 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~  285 (527)
                               ....+|++|++++|.+.+.  ..+..+.+|++|+|++|.+++ + ..+..+.+|++|+|++|++++.  ..
T Consensus        87 ---------~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~  151 (291)
T 1h6t_A           87 ---------ANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TV  151 (291)
T ss_dssp             ---------TTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GG
T ss_pred             ---------ccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hh
Confidence                     1224577777777777653  348899999999999999985 4 4688999999999999999865  67


Q ss_pred             cCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCC
Q 045837          286 FSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQ  356 (527)
Q Consensus       286 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  356 (527)
                      +..+.+|++|+|++|+|++..+  +..+++|++|++++|+++++.  .+..+.+|+.|++++|.++..+..
T Consensus       152 l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~~~~~~  218 (291)
T 1h6t_A          152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPIN  218 (291)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEECCCEE
T ss_pred             hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCcccCCccc
Confidence            8899999999999999998755  899999999999999999863  488899999999999999876543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=3.7e-18  Score=159.98  Aligned_cols=153  Identities=16%  Similarity=0.258  Sum_probs=121.3

Q ss_pred             CEEEccCCcccccccccccCCCCCcEEEeecCcCcccCC-cccccCCcccEEecccCCCCCCcchhhhccccchhhcccc
Q 045837          127 ALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFP-NVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNN  205 (527)
Q Consensus       127 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n  205 (527)
                      ++|++++|+++. ++..+.  ..+++|+|++|+|++..+ ..|..+.+|++|+|++|.|++ ++.               
T Consensus        14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~-i~~---------------   74 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEE---------------   74 (220)
T ss_dssp             TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE-ECT---------------
T ss_pred             CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE-ECH---------------
Confidence            578888888874 454442  356788888888886643 457778888888888888763 221               


Q ss_pred             cccccccccc-CCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCc
Q 045837          206 RFSSWIPETI-GESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQ  284 (527)
Q Consensus       206 ~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~  284 (527)
                             ..+ +..+|++|+|++|++.+..+..|.++.+|++|+|++|.|++..+..|.++.+|++|+|++|++++..+.
T Consensus        75 -------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  147 (220)
T 2v70_A           75 -------GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG  147 (220)
T ss_dssp             -------TTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred             -------HHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence                   112 234688999999999887777789999999999999999988888899999999999999999988888


Q ss_pred             ccCCCCCCcEEeccCCCCCCc
Q 045837          285 SFSSLESIHRLVLSYNQLTGY  305 (527)
Q Consensus       285 ~~~~l~~L~~L~Ls~N~l~~~  305 (527)
                      .|..+.+|++|+|++|.+.+.
T Consensus       148 ~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          148 AFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             TTTTCTTCCEEECCSCCEECS
T ss_pred             HhcCCCCCCEEEecCcCCcCC
Confidence            899999999999999998764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=3e-18  Score=160.57  Aligned_cols=152  Identities=17%  Similarity=0.219  Sum_probs=118.2

Q ss_pred             cEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccC-CCCcceEeccCCc
Q 045837          151 YEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIG-ESTVSVVTFAHNN  229 (527)
Q Consensus       151 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~n~  229 (527)
                      +.++++++.++ .++..+.  .+|++|+|++|.|+                       +.....+. ..+|++|+|++|+
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~-----------------------~i~~~~~~~l~~L~~L~Ls~N~   67 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK-----------------------VIPPGAFSPYKKLRRIDLSNNQ   67 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCC-----------------------EECTTSSTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCC-----------------------CcCHhHhhCCCCCCEEECCCCc
Confidence            45666666665 3344332  45666666666665                       32222332 3468888888888


Q ss_pred             CCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhh
Q 045837          230 FSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQ  309 (527)
Q Consensus       230 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~  309 (527)
                      +.+..+..|.++.+|++|+|++|.|++.....|.++.+|++|+|++|+|++..+..|..+.+|++|+|++|+|+++....
T Consensus        68 i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  147 (220)
T 2v9t_B           68 ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT  147 (220)
T ss_dssp             CCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             CCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHH
Confidence            88877888999999999999999998655566788999999999999999888888999999999999999999888888


Q ss_pred             hhCCCCCcEEEecCcccCC
Q 045837          310 ICKLPNINNFTFSYNYFQG  328 (527)
Q Consensus       310 l~~l~~L~~L~Ls~N~l~~  328 (527)
                      |..+.+|++|+|++|.|..
T Consensus       148 ~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          148 FSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             TTTCTTCCEEECCSSCEEC
T ss_pred             HhCCCCCCEEEeCCCCcCC
Confidence            8899999999999998865

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=6.5e-18  Score=159.34  Aligned_cols=135  Identities=17%  Similarity=0.204  Sum_probs=110.2

Q ss_pred             CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEec
Q 045837          218 STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVL  297 (527)
Q Consensus       218 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  297 (527)
                      .+|++|+|++|++.+..+..|.++.+|++|+|++|.|++.....|..+.+|++|+|++|+|++..+..|..+.+|++|+|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            45778888888888777777888888888888888887555566788888888888888888766666788888888888


Q ss_pred             cCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCC
Q 045837          298 SYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQR  353 (527)
Q Consensus       298 s~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  353 (527)
                      ++|+|+ .++..+..+.+|++|+|++|+|+++....|..+.+|+.|++++|.+...
T Consensus       120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            888888 4567778888888888888888888777788888888888888888754

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=3.2e-18  Score=183.66  Aligned_cols=172  Identities=20%  Similarity=0.341  Sum_probs=130.6

Q ss_pred             CCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccE
Q 045837           97 SNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRY  176 (527)
Q Consensus        97 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  176 (527)
                      ..+.+|+.|+|++|.+...  ..|..+++|++|+|++|+|.+..+  |.++.+|++|+|++|++.+.  ..+..+.+|++
T Consensus        40 ~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~  113 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS  113 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred             hcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence            3567789999999998775  368899999999999999997654  88999999999999999853  36888999999


Q ss_pred             EecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCC
Q 045837          177 LDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMG  256 (527)
Q Consensus       177 L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  256 (527)
                      |+|++|.+. .++......+|+.|+|++|++++. .......+|++|+|++|.+.+..+  +..+.+|++|+|++|.|++
T Consensus       114 L~Ls~N~l~-~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          114 LSLEHNGIS-DINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             EECTTSCCC-CCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             EEecCCCCC-CCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence            999999998 444333336788888888877765 222334567777777777776544  6777777777777777774


Q ss_pred             CChhhccCCCCCCEEEccCCcccc
Q 045837          257 CLPSEIGWLKKLTVFDASSNSFYG  280 (527)
Q Consensus       257 ~~p~~~~~l~~L~~L~Ls~n~l~~  280 (527)
                       + ..+..+.+|+.|+|++|.+.+
T Consensus       190 -l-~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          190 -L-RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             -C-GGGTTCTTCSEEECCSEEEEC
T ss_pred             -C-hHHccCCCCCEEEccCCcCcC
Confidence             3 356777777777777777764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.76  E-value=6.6e-19  Score=169.78  Aligned_cols=171  Identities=16%  Similarity=0.249  Sum_probs=116.6

Q ss_pred             CcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEE
Q 045837           98 NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYL  177 (527)
Q Consensus        98 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  177 (527)
                      .+.+++.++++++.+++..  .+..+.+|++|++++|+|... + .+..+.+|++|+|++|++++..+  +.++.+|++|
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            3556777778888877643  567788888888888888754 3 57788888888888888875433  7778888888


Q ss_pred             ecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCC
Q 045837          178 DLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC  257 (527)
Q Consensus       178 ~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  257 (527)
                      +|++|.+++ ++...                       . .+|++|++++|++.+.  ..+..+.+|++|+|++|++++.
T Consensus        91 ~L~~N~l~~-l~~~~-----------------------~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~  143 (263)
T 1xeu_A           91 SVNRNRLKN-LNGIP-----------------------S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI  143 (263)
T ss_dssp             ECCSSCCSC-CTTCC-----------------------C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC
T ss_pred             ECCCCccCC-cCccc-----------------------c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC
Confidence            888888762 22110                       1 3466666666666643  2466677777777777777643


Q ss_pred             ChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCc
Q 045837          258 LPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGY  305 (527)
Q Consensus       258 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  305 (527)
                       + .+..+++|++|+|++|++++.  ..+..+.+|+.|+|++|.+++.
T Consensus       144 -~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          144 -V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             -G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             -h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence             3 566677777777777777654  4566667777777777766644

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.74  E-value=3e-19  Score=196.23  Aligned_cols=188  Identities=17%  Similarity=0.168  Sum_probs=74.8

Q ss_pred             CccccceeeCCCCCCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccc---------cccccccCCCCCcE
Q 045837           82 VCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCG---------IIPESLSNWKLIYE  152 (527)
Q Consensus        82 ~c~~~gv~c~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~---------~~~~~~~~l~~L~~  152 (527)
                      .+.|.+..+.       ..+++.|+|.+|.+... +..     .|+.++|+.|+|.+         ..++.|..+..|++
T Consensus       162 ~~~~~~~~~s-------~~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~  228 (727)
T 4b8c_D          162 SGTATNSAVS-------TPLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHA  228 (727)
T ss_dssp             -------------------------------------------------------------------------CCCCCCE
T ss_pred             cccCCCceec-------CCccceEEeeCCCCCcc-hhh-----HhhcCccCcccccCccccccceecChhhhccCCCCcE
Confidence            4556666552       35688999998888663 222     23444444444432         33445566666666


Q ss_pred             EEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCc
Q 045837          153 FDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSG  232 (527)
Q Consensus       153 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~  232 (527)
                      |+|++|.+. .++..+.++.+|++|+|++|.|+ .++..+..                      ..+|++|+|++|+|+ 
T Consensus       229 L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~----------------------l~~L~~L~Ls~N~l~-  283 (727)
T 4b8c_D          229 LDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKN----------------------LSNLRVLDLSHNRLT-  283 (727)
T ss_dssp             EECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG----------------------GTTCCEEECTTSCCS-
T ss_pred             EECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhC----------------------CCCCCEEeCcCCcCC-
Confidence            666666665 44444556666666666666665 55544332                      233555555555555 


Q ss_pred             cCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCC-CcEEeccCCCCCCcchh
Q 045837          233 CVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLES-IHRLVLSYNQLTGYVSE  308 (527)
Q Consensus       233 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~~~  308 (527)
                      .++..|+++.+|++|+|++|.|+ .++..|+.+++|++|+|++|.|++.++..+..+.. +..|+|++|.+++.++.
T Consensus       284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            44555555566666666666555 45555555666666666666665555544433211 12245555555554443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=1.3e-17  Score=153.36  Aligned_cols=105  Identities=13%  Similarity=0.235  Sum_probs=69.4

Q ss_pred             cceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCc-ccccCCcccCCCCCCcEEecc
Q 045837          220 VSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNS-FYGSVPQSFSSLESIHRLVLS  298 (527)
Q Consensus       220 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls  298 (527)
                      |++|++++|.+.+..+..|+.+.+|++|+|++|.+++..+..++.+++|++|+|++|. ++ .++ .+..+.+|++|+|+
T Consensus        90 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~  167 (197)
T 4ezg_A           90 LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQ  167 (197)
T ss_dssp             CCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECT
T ss_pred             CCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECC
Confidence            3444444444444444556677778888888888876667777778888888888887 54 443 56777778888888


Q ss_pred             CCCCCCcchhhhhCCCCCcEEEecCcccCC
Q 045837          299 YNQLTGYVSEQICKLPNINNFTFSYNYFQG  328 (527)
Q Consensus       299 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  328 (527)
                      +|++++..  .+.++++|++|++++|++.+
T Consensus       168 ~n~i~~~~--~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          168 FDGVHDYR--GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             TBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred             CCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence            88777643  56777777778877777653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=4.6e-18  Score=163.82  Aligned_cols=171  Identities=14%  Similarity=0.179  Sum_probs=118.6

Q ss_pred             CCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEec
Q 045837          146 NWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTF  225 (527)
Q Consensus       146 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L  225 (527)
                      ++.++..+++++|.+++..  .+..+.+|++|++++|.++ .++......+|++|+|++|++++... .....+|++|++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence            4556777788888887443  5677888999999999887 55532223678888888887777544 333456777777


Q ss_pred             cCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCc
Q 045837          226 AHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGY  305 (527)
Q Consensus       226 ~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  305 (527)
                      ++|++.+.. . +.. .+|++|+|++|.+++ ++ .+..+.+|++|+|++|++++.  ..+..+.+|++|+|++|+|++.
T Consensus        93 ~~N~l~~l~-~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           93 NRNRLKNLN-G-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CSSCCSCCT-T-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC
T ss_pred             CCCccCCcC-c-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch
Confidence            777777532 2 222 677777777777774 33 467777777777777777643  2566777777777777777765


Q ss_pred             chhhhhCCCCCcEEEecCcccCCC
Q 045837          306 VSEQICKLPNINNFTFSYNYFQGL  329 (527)
Q Consensus       306 ~~~~l~~l~~L~~L~Ls~N~l~~~  329 (527)
                        ..+..+.+|++|++++|.+++.
T Consensus       166 --~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          166 --GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             --TTSTTCCCCCEEEEEEEEEECC
T ss_pred             --HHhccCCCCCEEeCCCCcccCC
Confidence              5667777777777777777665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.73  E-value=6.7e-20  Score=197.55  Aligned_cols=139  Identities=12%  Similarity=0.043  Sum_probs=89.3

Q ss_pred             CCcceEeccCCcCCccCCCCCCC-CCCCcEEEcc----cCCCCCC-----ChhhccCCCCCCEEEccCCc--ccccCCcc
Q 045837          218 STVSVVTFAHNNFSGCVPRSIGN-MPNVNEIILS----NNDLMGC-----LPSEIGWLKKLTVFDASSNS--FYGSVPQS  285 (527)
Q Consensus       218 ~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~Ls----~N~l~~~-----~p~~~~~l~~L~~L~Ls~n~--l~~~~p~~  285 (527)
                      .+|++|+++.|++++.....+.. +++|++|+++    .|.+++.     +...+.++++|++|+|++|.  +++.....
T Consensus       378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~  457 (592)
T 3ogk_B          378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY  457 (592)
T ss_dssp             TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred             ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence            45666666656555443333333 6677777775    4556542     23335567778888876543  44333333


Q ss_pred             c-CCCCCCcEEeccCCCCCCc-chhhhhCCCCCcEEEecCcccCCC-CCCCCCCCCCCceecCCCCCCCCCCCC
Q 045837          286 F-SSLESIHRLVLSYNQLTGY-VSEQICKLPNINNFTFSYNYFQGL-GNECIPGSKEGGVFDDTSNCLAQRPSQ  356 (527)
Q Consensus       286 ~-~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~  356 (527)
                      + ..+++|++|+|++|++++. +...+.++++|++|++++|.+++. ....+..+++|++|++++|.++....+
T Consensus       458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~  531 (592)
T 3ogk_B          458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQD  531 (592)
T ss_dssp             HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTT
T ss_pred             HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHH
Confidence            3 2367899999999988763 345567888999999999987643 222334678899999999998865433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=2e-17  Score=152.09  Aligned_cols=154  Identities=16%  Similarity=0.246  Sum_probs=122.1

Q ss_pred             ccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEE
Q 045837          169 LSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEII  248 (527)
Q Consensus       169 ~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  248 (527)
                      ..+.+|++|++++|.++ .++. +                      ....+|++|++++|.+...  ..+..+.+|++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~~-l----------------------~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~   94 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLTG-I----------------------EYAHNIKDLTINNIHATNY--NPISGLSNLERLR   94 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCTT-G----------------------GGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEE
T ss_pred             hhcCCccEEeccCCCcc-ChHH-H----------------------hcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEE
Confidence            34566777777777665 3331 1                      1224577777777765533  3688899999999


Q ss_pred             cccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCC-CCCcchhhhhCCCCCcEEEecCcccC
Q 045837          249 LSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQ-LTGYVSEQICKLPNINNFTFSYNYFQ  327 (527)
Q Consensus       249 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~Ls~N~l~  327 (527)
                      +++|.+++..+..++.+.+|++|+|++|++++..+..+..+.+|++|+|++|. ++.. + .+.++++|++|++++|+++
T Consensus        95 l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A           95 IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             EECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCC
T ss_pred             eECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCc
Confidence            99999997778889999999999999999998778889999999999999998 6654 4 6899999999999999999


Q ss_pred             CCCCCCCCCCCCCceecCCCCCCCC
Q 045837          328 GLGNECIPGSKEGGVFDDTSNCLAQ  352 (527)
Q Consensus       328 ~~~~~~~~~l~~L~~L~l~~N~l~~  352 (527)
                      +..  .+..+++|+.|++++|.|.+
T Consensus       173 ~~~--~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          173 DYR--GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCT--TGGGCSSCCEEEECBC----
T ss_pred             ChH--HhccCCCCCEEEeeCcccCC
Confidence            864  68889999999999999864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=1.1e-19  Score=193.87  Aligned_cols=190  Identities=17%  Similarity=0.151  Sum_probs=156.4

Q ss_pred             cCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCC-------------CCCCcchhhhc-cccchhh-cccccccc
Q 045837          145 SNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNN-------------FEGEVPRELFK-MKLDAIF-LNNNRFSS  209 (527)
Q Consensus       145 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------------i~~~~p~~~~~-~~L~~L~-L~~n~l~~  209 (527)
                      ..+..|+.|+|++|++. .++..++.|.+|+.|++++|.             +.+.++..+.. .+|+.|+ ++.|.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            56788999999999997 778888999999999987764             33344444433 4677777 6666543 


Q ss_pred             ccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCC
Q 045837          210 WIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSL  289 (527)
Q Consensus       210 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l  289 (527)
                               .|..+.+.+|.+.....      ..|++|+|++|.|++ ++. ++.+.+|++|+|++|+|+ .+|..|+.+
T Consensus       424 ---------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  485 (567)
T 1dce_A          424 ---------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL  485 (567)
T ss_dssp             ---------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred             ---------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcC
Confidence                     35666777777664322      258999999999995 675 999999999999999999 788999999


Q ss_pred             CCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCC-CCCCCCCCCCceecCCCCCCCCCCCC
Q 045837          290 ESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLG-NECIPGSKEGGVFDDTSNCLAQRPSQ  356 (527)
Q Consensus       290 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~  356 (527)
                      .+|+.|+|++|+|++ ++ .++++.+|++|+|++|+|++.. +..+..+.+|+.|++++|.|++.+..
T Consensus       486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            999999999999998 45 8999999999999999999987 88899999999999999999987643

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.70  E-value=2.4e-19  Score=193.18  Aligned_cols=112  Identities=17%  Similarity=0.145  Sum_probs=76.7

Q ss_pred             CCCCCcEEEcccCCCCCCChhhccC-CCCCCEEEcc----CCccccc-----CCcccCCCCCCcEEeccCCC--CCCcch
Q 045837          240 NMPNVNEIILSNNDLMGCLPSEIGW-LKKLTVFDAS----SNSFYGS-----VPQSFSSLESIHRLVLSYNQ--LTGYVS  307 (527)
Q Consensus       240 ~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls----~n~l~~~-----~p~~~~~l~~L~~L~Ls~N~--l~~~~~  307 (527)
                      .+.+|++|+++.|.+++.....+.. +++|++|+|+    .|.+++.     +...+.++++|++|+|++|.  +++...
T Consensus       376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~  455 (592)
T 3ogk_B          376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL  455 (592)
T ss_dssp             HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred             hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence            4667777777777776555445544 7778888885    5566542     22335567888888887543  665544


Q ss_pred             hhhh-CCCCCcEEEecCcccCCC-CCCCCCCCCCCceecCCCCCCC
Q 045837          308 EQIC-KLPNINNFTFSYNYFQGL-GNECIPGSKEGGVFDDTSNCLA  351 (527)
Q Consensus       308 ~~l~-~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~  351 (527)
                      ..+. .+++|++|++++|++++. ....+.++.+|++|++++|.|+
T Consensus       456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~  501 (592)
T 3ogk_B          456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS  501 (592)
T ss_dssp             HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred             HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence            4444 478899999999988753 2334567889999999999876

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.69  E-value=4.7e-17  Score=149.00  Aligned_cols=111  Identities=16%  Similarity=0.249  Sum_probs=73.6

Q ss_pred             CcceEeccCCcCCccCCC-CCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEec
Q 045837          219 TVSVVTFAHNNFSGCVPR-SIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVL  297 (527)
Q Consensus       219 ~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  297 (527)
                      ++++|++++|++.+.... .|+.+.+|++|+|++|.|++..+..|.++.+|++|+|++|+|++..+..|.++.+|++|+|
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            455566666665544433 3666667777777777776666666667777777777777776666666666777777777


Q ss_pred             cCCCCCCcchhhhhCCCCCcEEEecCcccCCC
Q 045837          298 SYNQLTGYVSEQICKLPNINNFTFSYNYFQGL  329 (527)
Q Consensus       298 s~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  329 (527)
                      ++|+|++..+..+..+++|++|+|++|.|.+.
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            77777766666666677777777777766654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=1.7e-16  Score=145.25  Aligned_cols=131  Identities=18%  Similarity=0.225  Sum_probs=117.8

Q ss_pred             cceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChh-hccCCCCCCEEEccCCcccccCCcccCCCCCCcEEecc
Q 045837          220 VSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPS-EIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLS  298 (527)
Q Consensus       220 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  298 (527)
                      .++|++++|++. .++..+..  +|++|+|++|.+++..+. .|+.+++|++|+|++|+|++..+..|.++.+|++|+|+
T Consensus        10 ~~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           10 GTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            467889999886 55655544  899999999999966554 48999999999999999998889999999999999999


Q ss_pred             CCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCC
Q 045837          299 YNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQR  353 (527)
Q Consensus       299 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  353 (527)
                      +|+|++..+..|.++++|++|+|++|+|++..+..|..+.+|++|++++|.+++.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            9999998888899999999999999999999999999999999999999999854

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.68  E-value=6.9e-17  Score=144.43  Aligned_cols=136  Identities=18%  Similarity=0.198  Sum_probs=112.0

Q ss_pred             CCcceEeccCCcCC-ccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEe
Q 045837          218 STVSVVTFAHNNFS-GCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLV  296 (527)
Q Consensus       218 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  296 (527)
                      .+|++|++++|.+. +.++..+..+.+|++|+|++|.+++.  ..+..+.+|++|+|++|++++.++..+..+.+|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45888888888887 56677778888999999999998855  6788889999999999999876777777788999999


Q ss_pred             ccCCCCCCcc-hhhhhCCCCCcEEEecCcccCCCCC---CCCCCCCCCceecCCCCCCCCCCC
Q 045837          297 LSYNQLTGYV-SEQICKLPNINNFTFSYNYFQGLGN---ECIPGSKEGGVFDDTSNCLAQRPS  355 (527)
Q Consensus       297 Ls~N~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~~~~~  355 (527)
                      |++|+|++.. ...+..+++|++|++++|.+++...   ..+..+++|+.|++++|.+..++.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            9999988753 2678888999999999999988765   467888899999999988876653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.65  E-value=9.2e-16  Score=140.47  Aligned_cols=128  Identities=23%  Similarity=0.303  Sum_probs=97.8

Q ss_pred             ceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCC
Q 045837          221 SVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYN  300 (527)
Q Consensus       221 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  300 (527)
                      +.+++++|++. .++..+.  .+|++|+|++|.|+ .++..|.++.+|++|+|++|+|++..+..|.++.+|++|+|++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            45677777766 3444443  47888888888887 66677888888888888888888776677888888888888888


Q ss_pred             CCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCC
Q 045837          301 QLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQ  352 (527)
Q Consensus       301 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  352 (527)
                      +|+++.+..|.++++|++|+|++|+|+++....|..+.+|+.|++++|.+..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            8887777778888888888888888887777777778888888888887764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=5.7e-17  Score=161.52  Aligned_cols=102  Identities=16%  Similarity=0.103  Sum_probs=82.2

Q ss_pred             CCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCc-EEeccCCCCCCcchhhhhCCCCCcEE
Q 045837          241 MPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIH-RLVLSYNQLTGYVSEQICKLPNINNF  319 (527)
Q Consensus       241 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~~~~l~~l~~L~~L  319 (527)
                      +.+|++|+|++|+++..-...|.++.+|++|+|.+| ++.+....|.++.+|+ .|+|.+ .++.+....|.++.+|++|
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            678888888888888666667888888888888887 6656666788888888 888887 6776667788888888888


Q ss_pred             EecCcccCCCCCCCCCCCCCCceec
Q 045837          320 TFSYNYFQGLGNECIPGSKEGGVFD  344 (527)
Q Consensus       320 ~Ls~N~l~~~~~~~~~~l~~L~~L~  344 (527)
                      ++++|+++.+...+|.++.+|+.|+
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EeCCCccCccchhhhcCCcchhhhc
Confidence            8888888888888888888888775

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=2.4e-17  Score=181.07  Aligned_cols=195  Identities=16%  Similarity=0.137  Sum_probs=100.9

Q ss_pred             eEEEEEcCCCCcCC---------CCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccC
Q 045837          101 VVAGIDLNGNDIAG---------YFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSW  171 (527)
Q Consensus       101 ~L~~L~L~~n~l~~---------~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  171 (527)
                      .++.++|+.+.|.+         ..++.+..+..|++|+|++|+|. .++..+.++.+|++|+|++|.|+ .++..|.+|
T Consensus       192 ~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  269 (727)
T 4b8c_D          192 LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL  269 (727)
T ss_dssp             ------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG
T ss_pred             HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCC
Confidence            34555555555443         23567889999999999999998 56666779999999999999999 788889999


Q ss_pred             CcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEccc
Q 045837          172 TSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSN  251 (527)
Q Consensus       172 ~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  251 (527)
                      .+|++|+|++|.|+ .++..+..                      ..+|++|+|++|.|. .++..|+++.+|++|+|++
T Consensus       270 ~~L~~L~Ls~N~l~-~lp~~~~~----------------------l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          270 SNLRVLDLSHNRLT-SLPAELGS----------------------CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG  325 (727)
T ss_dssp             TTCCEEECTTSCCS-SCCSSGGG----------------------GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred             CCCCEEeCcCCcCC-ccChhhcC----------------------CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence            99999999999998 77765543                      123555555555554 4455566666666777776


Q ss_pred             CCCCCCChhhccCCCC-CCEEEccCCcccccCCcccCCCCCCcEEeccCC--------CCCCcchhhhhCCCCCcEEEec
Q 045837          252 NDLMGCLPSEIGWLKK-LTVFDASSNSFYGSVPQSFSSLESIHRLVLSYN--------QLTGYVSEQICKLPNINNFTFS  322 (527)
Q Consensus       252 N~l~~~~p~~~~~l~~-L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N--------~l~~~~~~~l~~l~~L~~L~Ls  322 (527)
                      |.|++.++..+..+.. +..|+|++|.+++.++.      .|+.|++++|        .|.+.....+.++..+....++
T Consensus       326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls  399 (727)
T 4b8c_D          326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLS  399 (727)
T ss_dssp             SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------------------------------------
T ss_pred             CccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeee
Confidence            6666665555543321 12355666666655543      3344444444        2222233333444444555555


Q ss_pred             CcccC
Q 045837          323 YNYFQ  327 (527)
Q Consensus       323 ~N~l~  327 (527)
                      +|.+.
T Consensus       400 ~Nil~  404 (727)
T 4b8c_D          400 YNTLC  404 (727)
T ss_dssp             --CCC
T ss_pred             ccccc
Confidence            55553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.65  E-value=3.7e-15  Score=152.07  Aligned_cols=242  Identities=11%  Similarity=0.082  Sum_probs=129.1

Q ss_pred             ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837          100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL  179 (527)
Q Consensus       100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  179 (527)
                      ..++.+.|.+ .++.+-...|.++ +|+.++|.++ ++.+...+|.++ +|++++|.+ .+...-...|.+|.+|+.++|
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l  187 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL  187 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred             CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence            3444555543 2333333455553 5666666554 544444555553 466666654 444444455666666666666


Q ss_pred             ccCCCCCCcchhhhc-cccchhhccccccccccccccCC-CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCC
Q 045837          180 RYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIGE-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC  257 (527)
Q Consensus       180 s~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  257 (527)
                      .+|.++ .++...+. .+|+.+.|..+ +.......|.. .+|++|+|..+ +.......|.+ .+|+.++|. +.++..
T Consensus       188 ~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I  262 (401)
T 4fdw_A          188 SKTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNI  262 (401)
T ss_dssp             TTSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred             CCCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEE
Confidence            666665 44443333 45666666533 44333333433 34666666543 33333344444 566666663 334434


Q ss_pred             ChhhccCCCCCCEEEccCCccc-----ccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCC
Q 045837          258 LPSEIGWLKKLTVFDASSNSFY-----GSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNE  332 (527)
Q Consensus       258 ~p~~~~~l~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~  332 (527)
                      -...|.++.+|+.|++.+|.+.     ......|.+|.+|+.|+|.+ .++.+....|.++.+|+.|+|.+| ++.+...
T Consensus       263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~  340 (401)
T 4fdw_A          263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFS  340 (401)
T ss_dssp             CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred             ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence            4455666666666666665543     23334566666666666663 355455556666666666666443 5555555


Q ss_pred             CCCCCCCCceecCCCCCCCCCC
Q 045837          333 CIPGSKEGGVFDDTSNCLAQRP  354 (527)
Q Consensus       333 ~~~~l~~L~~L~l~~N~l~~~~  354 (527)
                      +|.++ +|+.|++.+|.+..+.
T Consensus       341 aF~~~-~L~~l~l~~n~~~~l~  361 (401)
T 4fdw_A          341 AFNNT-GIKEVKVEGTTPPQVF  361 (401)
T ss_dssp             SSSSS-CCCEEEECCSSCCBCC
T ss_pred             hCCCC-CCCEEEEcCCCCcccc
Confidence            66666 6666666666555443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.64  E-value=2e-16  Score=138.48  Aligned_cols=128  Identities=16%  Similarity=0.164  Sum_probs=103.4

Q ss_pred             CCcceEeccCCcCC-ccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEe
Q 045837          218 STVSVVTFAHNNFS-GCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLV  296 (527)
Q Consensus       218 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  296 (527)
                      .++++|++++|.+. +.++..+..+.+|++|++++|.+++.  ..+..+.+|++|+|++|.+++.++..+..+.+|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            35788888888887 56777778888899999999988855  6788888899999999988876777777788899999


Q ss_pred             ccCCCCCCc-chhhhhCCCCCcEEEecCcccCCCCC---CCCCCCCCCceecCCC
Q 045837          297 LSYNQLTGY-VSEQICKLPNINNFTFSYNYFQGLGN---ECIPGSKEGGVFDDTS  347 (527)
Q Consensus       297 Ls~N~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~l~~  347 (527)
                      |++|++++. ....+.++++|++|++++|.+++...   ..+..+++|+.||+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999988874 34678888889999999998888765   4577788888888763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=9.1e-16  Score=137.10  Aligned_cols=93  Identities=20%  Similarity=0.212  Sum_probs=56.8

Q ss_pred             CCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccC-CcccCCCCCCcEEeccCCCCCCcch---hhhhC
Q 045837          237 SIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSV-PQSFSSLESIHRLVLSYNQLTGYVS---EQICK  312 (527)
Q Consensus       237 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~~---~~l~~  312 (527)
                      .+..+.+|++|+|++|.+++.++..+..+.+|++|+|++|++++.. ...+..+.+|++|+|++|.+++...   ..+..
T Consensus        66 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~  145 (168)
T 2ell_A           66 NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKL  145 (168)
T ss_dssp             SCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTT
T ss_pred             hhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHh
Confidence            3445556666666666666545555555666666666666665421 1456666666777777776665544   45666


Q ss_pred             CCCCcEEEecCcccCCC
Q 045837          313 LPNINNFTFSYNYFQGL  329 (527)
Q Consensus       313 l~~L~~L~Ls~N~l~~~  329 (527)
                      +++|++|++++|.+...
T Consensus       146 l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          146 LPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             CSSCCEETTEETTSCBC
T ss_pred             CccCcEecCCCCChhhc
Confidence            77777777777766543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.64  E-value=3.2e-15  Score=134.81  Aligned_cols=131  Identities=16%  Similarity=0.145  Sum_probs=92.7

Q ss_pred             cceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccC
Q 045837          220 VSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSY  299 (527)
Q Consensus       220 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  299 (527)
                      .+.++++++++.. ++..+  ..+|++|++++|.+++..+..|..+.+|++|+|++|++++..+..|..+.+|++|+|++
T Consensus         9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            4566666666663 33322  25677777777777755555667777778888877777765555667777788888888


Q ss_pred             CCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCC
Q 045837          300 NQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQR  353 (527)
Q Consensus       300 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  353 (527)
                      |+|++.....+..+.+|++|++++|+++++....+..+.+|++|++++|.+.+.
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            877776666677777788888888877777666667777788888888877654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=5.3e-15  Score=133.34  Aligned_cols=111  Identities=16%  Similarity=0.212  Sum_probs=88.4

Q ss_pred             CcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEecc
Q 045837          219 TVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLS  298 (527)
Q Consensus       219 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  298 (527)
                      +|++|++++|++.+.....|..+.+|++|+|++|.+++..+..|..+.+|++|+|++|++++..+..|..+.+|++|+|+
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  108 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD  108 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence            57777777777776666667788888888888888886666667888888888888888887666667888888888888


Q ss_pred             CCCCCCcchhhhhCCCCCcEEEecCcccCCC
Q 045837          299 YNQLTGYVSEQICKLPNINNFTFSYNYFQGL  329 (527)
Q Consensus       299 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  329 (527)
                      +|+|+++....+..+++|++|+|++|.+.+.
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A          109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            8888877666677888888888888888764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.60  E-value=2.8e-14  Score=145.63  Aligned_cols=245  Identities=13%  Similarity=0.089  Sum_probs=194.4

Q ss_pred             CCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcc
Q 045837           95 DNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSL  174 (527)
Q Consensus        95 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  174 (527)
                      .|.++ +|+.++|.++ +..+-...|.++ +|+.++|.+ ++..+...+|.++.+|+.++|.+|+++..-...|. +.+|
T Consensus       131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L  205 (401)
T 4fdw_A          131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGI  205 (401)
T ss_dssp             TTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCC
T ss_pred             hcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-eccc
Confidence            35554 6999999876 666555677774 799999986 67777778899999999999999999855555565 6899


Q ss_pred             cEEecccCCCCCCcchhhhc--cccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccC
Q 045837          175 RYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNN  252 (527)
Q Consensus       175 ~~L~Ls~n~i~~~~p~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N  252 (527)
                      +.+.|.++ ++ .+....+.  .+|+.|+|..+ ++......|...+|+++.| .+.+.......|.++.+|+++++.+|
T Consensus       206 ~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~  281 (401)
T 4fdw_A          206 EEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGS  281 (401)
T ss_dssp             SEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESS
T ss_pred             CEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCc
Confidence            99999855 65 56555554  58999999875 5555556666678999999 45666666778999999999999998


Q ss_pred             CCC-----CCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccC
Q 045837          253 DLM-----GCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQ  327 (527)
Q Consensus       253 ~l~-----~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  327 (527)
                      .+.     ......|.++.+|+.++|.+ +++......|.+|.+|+.|+|.+| ++.+...+|.++ +|+.|++++|.+.
T Consensus       282 ~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          282 TFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             CCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             cccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            765     34566899999999999994 577666678999999999999665 776667889999 9999999999998


Q ss_pred             CCCCCCCCCCC-CCceecCCCCCCC
Q 045837          328 GLGNECIPGSK-EGGVFDDTSNCLA  351 (527)
Q Consensus       328 ~~~~~~~~~l~-~L~~L~l~~N~l~  351 (527)
                      .+....|.++. +++.|.+..+.+.
T Consensus       359 ~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          359 QVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             BCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             ccccccccCCCCCccEEEeCHHHHH
Confidence            88778888884 7788888777654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.60  E-value=4.8e-15  Score=135.69  Aligned_cols=109  Identities=21%  Similarity=0.268  Sum_probs=88.5

Q ss_pred             CcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEecc
Q 045837          219 TVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLS  298 (527)
Q Consensus       219 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  298 (527)
                      ++++|+|++|++. .++..|.++.+|++|+|++|.|++..+..|.++.+|++|+|++|+|++..+..|.++.+|++|+|+
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            5677777777776 455678888888888888888887777778888888888888888887777778888888888888


Q ss_pred             CCCCCCcchhhhhCCCCCcEEEecCcccCC
Q 045837          299 YNQLTGYVSEQICKLPNINNFTFSYNYFQG  328 (527)
Q Consensus       299 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  328 (527)
                      +|+|+++....|..+.+|++|+|++|.+.+
T Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          111 GNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            888887776778888888888888888765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.59  E-value=3.1e-17  Score=176.68  Aligned_cols=89  Identities=8%  Similarity=0.013  Sum_probs=53.9

Q ss_pred             ccCCCCCCEEEccCCcccccCCcccCC-CCCCcEEeccCCCCCCcchhhh-hCCCCCcEEEecCcccCCCCCC-CCCCCC
Q 045837          262 IGWLKKLTVFDASSNSFYGSVPQSFSS-LESIHRLVLSYNQLTGYVSEQI-CKLPNINNFTFSYNYFQGLGNE-CIPGSK  338 (527)
Q Consensus       262 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~  338 (527)
                      +..+++|++|+|++ .+++.....+.. +++|++|+|++|.+++.....+ .++++|++|+|++|.+++.... .+..++
T Consensus       428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~  506 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE  506 (594)
T ss_dssp             HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred             HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence            34455566666654 343322223332 5677888888887765544444 5677888888888877543222 234467


Q ss_pred             CCceecCCCCCCC
Q 045837          339 EGGVFDDTSNCLA  351 (527)
Q Consensus       339 ~L~~L~l~~N~l~  351 (527)
                      +|+.|++++|.++
T Consensus       507 ~L~~L~l~~~~~~  519 (594)
T 2p1m_B          507 TMRSLWMSSCSVS  519 (594)
T ss_dssp             GSSEEEEESSCCB
T ss_pred             CCCEEeeeCCCCC
Confidence            8888888888774

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.59  E-value=1.5e-17  Score=179.24  Aligned_cols=252  Identities=13%  Similarity=0.094  Sum_probs=148.5

Q ss_pred             CcceEEEEEcCCCC--cCCC-CccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCc---------------
Q 045837           98 NITVVAGIDLNGND--IAGY-FPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNR---------------  159 (527)
Q Consensus        98 ~~~~L~~L~L~~n~--l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---------------  159 (527)
                      .+++|+.|+|+++.  +... +...+.++++|++|+|++|...+.++..+.++.+|++|++.++.               
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l  261 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL  261 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence            56788888998886  2111 11122456888888888873222255556666677777654431               


Q ss_pred             -----------Cc----ccCCcccccCCcccEEecccCCCCCCcchhhhc--cccchhhcccccccccccccc--CCCCc
Q 045837          160 -----------LV----GSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETI--GESTV  220 (527)
Q Consensus       160 -----------l~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~--~~L~~L~L~~n~l~~~~~~~~--~~~~L  220 (527)
                                 +.    ..++..+..+.+|++|+|++|.+++.....+..  .+|++|++.+| +.......+  ...+|
T Consensus       262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L  340 (594)
T 2p1m_B          262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDL  340 (594)
T ss_dssp             HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTC
T ss_pred             hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCC
Confidence                       11    112222235678888888888866433222222  57888888877 332211111  23568


Q ss_pred             ceEeccC---------CcCCccCCCCC-CCCCCCcEEEcccCCCCCCChhhcc-CCCCCCEEEcc--C----Cccccc--
Q 045837          221 SVVTFAH---------NNFSGCVPRSI-GNMPNVNEIILSNNDLMGCLPSEIG-WLKKLTVFDAS--S----NSFYGS--  281 (527)
Q Consensus       221 ~~L~L~~---------n~l~~~~~~~l-~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls--~----n~l~~~--  281 (527)
                      ++|++.+         +.+++.....+ .++.+|++|+++.|.+++.....+. .+++|++|+|+  +    |++++.  
T Consensus       341 ~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~  420 (594)
T 2p1m_B          341 RELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL  420 (594)
T ss_dssp             CEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT
T ss_pred             CEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCch
Confidence            8887743         33332211112 2367788888887877754444443 47788888888  3    444411  


Q ss_pred             ---CCcccCCCCCCcEEeccCCCCCCcchhhhhC-CCCCcEEEecCcccCCCCCCCC-CCCCCCceecCCCCCCC
Q 045837          282 ---VPQSFSSLESIHRLVLSYNQLTGYVSEQICK-LPNINNFTFSYNYFQGLGNECI-PGSKEGGVFDDTSNCLA  351 (527)
Q Consensus       282 ---~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~l~~N~l~  351 (527)
                         +...+..+.+|++|+|++ .+++.....+.. +++|++|+|++|.+++.....+ .++++|+.|++++|.++
T Consensus       421 ~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~  494 (594)
T 2p1m_B          421 DIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG  494 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred             hhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence               112245667888888876 666554555554 7788888888888765433223 45678888888888875

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=3.5e-15  Score=130.45  Aligned_cols=104  Identities=15%  Similarity=0.174  Sum_probs=90.4

Q ss_pred             CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCccccc-CCcccCCCCCCcEEe
Q 045837          218 STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGS-VPQSFSSLESIHRLV  296 (527)
Q Consensus       218 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~  296 (527)
                      .+|++|++++|.+.+.  ..++.+.+|++|+|++|.+++.++..+..+.+|++|++++|.+++. .+..+..+++|++|+
T Consensus        42 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~  119 (149)
T 2je0_A           42 EELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD  119 (149)
T ss_dssp             TTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEE
T ss_pred             CCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEe
Confidence            4688888888888866  6788999999999999999977888888899999999999999863 336788999999999


Q ss_pred             ccCCCCCCcch---hhhhCCCCCcEEEecC
Q 045837          297 LSYNQLTGYVS---EQICKLPNINNFTFSY  323 (527)
Q Consensus       297 Ls~N~l~~~~~---~~l~~l~~L~~L~Ls~  323 (527)
                      |++|.+++...   ..+..+++|++|++++
T Consensus       120 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          120 LFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999998765   5789999999999864

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.52  E-value=2.1e-14  Score=142.97  Aligned_cols=196  Identities=9%  Similarity=0.049  Sum_probs=131.5

Q ss_pred             CCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCC----C-------------
Q 045837          123 LSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNF----E-------------  185 (527)
Q Consensus       123 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i----~-------------  185 (527)
                      +.+|++|+|.+ +++.+...+|.++.+|++|+|++|.+.......|.++.++.+|.+..+..    .             
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            56666666665 55555555566666666666666665544445555555555554443211    0             


Q ss_pred             ---------CCcchhhhc-----cccchhhcccccccccccccc-CCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcc
Q 045837          186 ---------GEVPRELFK-----MKLDAIFLNNNRFSSWIPETI-GESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILS  250 (527)
Q Consensus       186 ---------~~~p~~~~~-----~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  250 (527)
                               +.+...++.     .+++.+.+.++-......... ...+|++|+|.+|++.......|.++.+|++|+|.
T Consensus       179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~  258 (329)
T 3sb4_A          179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP  258 (329)
T ss_dssp             EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred             ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence                     011111111     123333333321110000000 13579999999999997777889999999999999


Q ss_pred             cCCCCCCChhhccCCCCCC-EEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEe
Q 045837          251 NNDLMGCLPSEIGWLKKLT-VFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTF  321 (527)
Q Consensus       251 ~N~l~~~~p~~~~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  321 (527)
                      +| ++..-...|.++.+|+ .|+|.+ +++.+....|.+|.+|+.|+|++|.++.+....|.++.+|+.|+.
T Consensus       259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            98 7766677899999999 999999 777666788999999999999999999888889999999999874

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.52  E-value=9.2e-15  Score=131.66  Aligned_cols=130  Identities=14%  Similarity=0.120  Sum_probs=87.4

Q ss_pred             CCcceEeccCCcCCccCCCCCCCCC-CCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEe
Q 045837          218 STVSVVTFAHNNFSGCVPRSIGNMP-NVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLV  296 (527)
Q Consensus       218 ~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  296 (527)
                      .+|++|++++|++... + .+..+. +|++|+|++|.+++.  ..+..+.+|++|+|++|++++..+..|..+.+|++|+
T Consensus        19 ~~L~~L~l~~n~l~~i-~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVI-E-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             TSCEEEECTTSCCCSC-C-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CCceEEEeeCCCCchh-H-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            4577777777777643 2 344444 777777777777743  4677777777888877777754444456777778888


Q ss_pred             ccCCCCCCcch-hhhhCCCCCcEEEecCcccCCCCCC---CCCCCCCCceecCCCCCCC
Q 045837          297 LSYNQLTGYVS-EQICKLPNINNFTFSYNYFQGLGNE---CIPGSKEGGVFDDTSNCLA  351 (527)
Q Consensus       297 Ls~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~l~~N~l~  351 (527)
                      |++|+|+.... ..+..+++|++|++++|.++.....   .+..+++|+.||+++|.+.
T Consensus        95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            88877764322 2667777788888888877654322   3666777778877777665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.50  E-value=1.1e-13  Score=123.91  Aligned_cols=106  Identities=20%  Similarity=0.250  Sum_probs=62.4

Q ss_pred             cceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccC
Q 045837          220 VSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSY  299 (527)
Q Consensus       220 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  299 (527)
                      .++|++++|++.. ++..+.  .+|++|+|++|.|++..+..|.++.+|++|+|++|+|++..+..|.++.+|++|+|++
T Consensus        11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            4556666666653 333332  4566666666666655555566666666666666666655444555666666666666


Q ss_pred             CCCCCcchhhhhCCCCCcEEEecCcccCC
Q 045837          300 NQLTGYVSEQICKLPNINNFTFSYNYFQG  328 (527)
Q Consensus       300 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  328 (527)
                      |+|+++....|.++.+|++|+|++|.|++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            66665555555666666666666665554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=2.6e-14  Score=128.64  Aligned_cols=136  Identities=18%  Similarity=0.180  Sum_probs=97.0

Q ss_pred             ccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcE
Q 045837          167 VCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNE  246 (527)
Q Consensus       167 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  246 (527)
                      .+..+.+|++|+|++|.++ .++......                      .+|++|++++|.+.+.  ..|..+.+|++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~~~~~~----------------------~~L~~L~Ls~N~l~~~--~~l~~l~~L~~   68 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIENLGATL----------------------DQFDAIDFSDNEIRKL--DGFPLLRRLKT   68 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGT----------------------TCCSEEECCSSCCCEE--CCCCCCSSCCE
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHHhhhcC----------------------CCCCEEECCCCCCCcc--cccccCCCCCE
Confidence            3456778888888888887 332211111                      1566777777777654  56778888888


Q ss_pred             EEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCc--ccCCCCCCcEEeccCCCCCCcchh---hhhCCCCCcEEEe
Q 045837          247 IILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQ--SFSSLESIHRLVLSYNQLTGYVSE---QICKLPNINNFTF  321 (527)
Q Consensus       247 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~~~---~l~~l~~L~~L~L  321 (527)
                      |+|++|.+++..+..+..+.+|++|+|++|+++ .++.  .+..+.+|++|+|++|.++.....   .+..+++|++||+
T Consensus        69 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~  147 (176)
T 1a9n_A           69 LLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  147 (176)
T ss_dssp             EECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             EECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCC
Confidence            888888888554444578888888888888886 4554  677888888888888888754322   4788888999998


Q ss_pred             cCcccCC
Q 045837          322 SYNYFQG  328 (527)
Q Consensus       322 s~N~l~~  328 (527)
                      ++|.+..
T Consensus       148 ~~n~~~~  154 (176)
T 1a9n_A          148 QKVKLKE  154 (176)
T ss_dssp             EECCHHH
T ss_pred             CcCCHHH
Confidence            8887653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.49  E-value=1.5e-16  Score=146.46  Aligned_cols=61  Identities=21%  Similarity=0.264  Sum_probs=33.6

Q ss_pred             CCCCCEEEccCCcccccccc------cccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCC
Q 045837          123 LSDLALFHVNSNRFCGIIPE------SLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFE  185 (527)
Q Consensus       123 l~~L~~L~Ls~n~i~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~  185 (527)
                      ...++.++++++++.+.++.      .|.++.+|++|+|++|++++ ++ .+..+.+|++|+|++|.++
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~   83 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK   83 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc
Confidence            33444444444444444333      55566666666666666654 33 5555666666666666554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.48  E-value=1.9e-13  Score=122.26  Aligned_cols=108  Identities=19%  Similarity=0.144  Sum_probs=82.4

Q ss_pred             CcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecC
Q 045837          244 VNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSY  323 (527)
Q Consensus       244 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~  323 (527)
                      .++|++++|.++ .+|..+  ..+|++|+|++|+|++..+..|.++.+|++|+|++|+|+++.+..|.++++|++|+|++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            567888888877 566544  37788888888888877677777888888888888888877666777788888888888


Q ss_pred             cccCCCCCCCCCCCCCCceecCCCCCCCCCC
Q 045837          324 NYFQGLGNECIPGSKEGGVFDDTSNCLAQRP  354 (527)
Q Consensus       324 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  354 (527)
                      |+|+++.+..|..+.+|+.|+|++|.++...
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            8888777777777888888888888776543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.48  E-value=1.8e-13  Score=122.87  Aligned_cols=105  Identities=19%  Similarity=0.250  Sum_probs=60.5

Q ss_pred             ceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCC
Q 045837          221 SVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYN  300 (527)
Q Consensus       221 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  300 (527)
                      +.+++++|++. .++..+.  .+|++|+|++|.|++..+..|.++++|++|+|++|+|++.....|..+.+|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            45666666654 3343332  45666666666666555555666666666666666666444444555666666666666


Q ss_pred             CCCCcchhhhhCCCCCcEEEecCcccCC
Q 045837          301 QLTGYVSEQICKLPNINNFTFSYNYFQG  328 (527)
Q Consensus       301 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  328 (527)
                      +|+++....|.++.+|++|+|++|.|..
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccc
Confidence            6665544445556666666666665554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.46  E-value=4e-13  Score=120.63  Aligned_cols=108  Identities=16%  Similarity=0.121  Sum_probs=79.6

Q ss_pred             CcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecC
Q 045837          244 VNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSY  323 (527)
Q Consensus       244 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~  323 (527)
                      -+++++++|.++ .+|..+.  .+|++|+|++|+|++..+..|.++.+|++|+|++|+|+++....|.++.+|++|+|++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            367777777776 5665543  6777888888887776677777777788888888877776666667777788888888


Q ss_pred             cccCCCCCCCCCCCCCCceecCCCCCCCCCC
Q 045837          324 NYFQGLGNECIPGSKEGGVFDDTSNCLAQRP  354 (527)
Q Consensus       324 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  354 (527)
                      |+|+++....|..+.+|+.|++++|.|...+
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            8777776666777777888888887776544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=1.9e-15  Score=138.96  Aligned_cols=127  Identities=15%  Similarity=0.167  Sum_probs=90.5

Q ss_pred             CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEec
Q 045837          218 STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVL  297 (527)
Q Consensus       218 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  297 (527)
                      .+|++|++++|++.+ ++ .+..+.+|++|++++|.++ .++..+..+.+|++|+|++|++++ ++ .+..+.+|++|+|
T Consensus        48 ~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l  122 (198)
T 1ds9_A           48 KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYM  122 (198)
T ss_dssp             TTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEE
T ss_pred             CCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEEC
Confidence            457777777777775 44 6777788888888888877 566666667788888888888875 33 5667778888888


Q ss_pred             cCCCCCCcch-hhhhCCCCCcEEEecCcccCCCCCCC----------CCCCCCCceecCCCCCCC
Q 045837          298 SYNQLTGYVS-EQICKLPNINNFTFSYNYFQGLGNEC----------IPGSKEGGVFDDTSNCLA  351 (527)
Q Consensus       298 s~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~----------~~~l~~L~~L~l~~N~l~  351 (527)
                      ++|+|++... ..+..+++|++|++++|.+++..+..          +..+++|+.||  +|.++
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            8888876433 46777888888888888876654432          56677777776  55554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.36  E-value=2.3e-14  Score=144.76  Aligned_cols=168  Identities=14%  Similarity=0.195  Sum_probs=78.3

Q ss_pred             CCCCEEEccCCcccccccccccC-----CCCCcEEEeecCcCcccCCccc-ccCCcccEEecccCCCCCCcchhhhcccc
Q 045837          124 SDLALFHVNSNRFCGIIPESLSN-----WKLIYEFDVSNNRLVGSFPNVC-LSWTSLRYLDLRYNNFEGEVPRELFKMKL  197 (527)
Q Consensus       124 ~~L~~L~Ls~n~i~~~~~~~~~~-----l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L  197 (527)
                      .+|++|+|++|+|+......|..     ..+|++|+|++|.++......+ ..+.+|++|+|++|.|+......+..   
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~---  148 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD---  148 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH---
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH---
Confidence            46777777777766433222221     2466666666666643211111 22345666666666554211111110   


Q ss_pred             chhhcccccccccccccc--CCCCcceEeccCCcCCcc----CCCCCCCCCCCcEEEcccCCCCCC----ChhhccCCCC
Q 045837          198 DAIFLNNNRFSSWIPETI--GESTVSVVTFAHNNFSGC----VPRSIGNMPNVNEIILSNNDLMGC----LPSEIGWLKK  267 (527)
Q Consensus       198 ~~L~L~~n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~  267 (527)
                                      .+  ...+|++|+|++|.|++.    +...+..+.+|++|+|++|.|++.    +...+..+.+
T Consensus       149 ----------------~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~  212 (372)
T 3un9_A          149 ----------------LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ  212 (372)
T ss_dssp             ----------------HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSC
T ss_pred             ----------------HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCC
Confidence                            00  112355555555554431    112234445566666666665422    1333444555


Q ss_pred             CCEEEccCCccccc----CCcccCCCCCCcEEeccCCCCCCcchhhh
Q 045837          268 LTVFDASSNSFYGS----VPQSFSSLESIHRLVLSYNQLTGYVSEQI  310 (527)
Q Consensus       268 L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l  310 (527)
                      |++|+|++|.|+..    +...+..+.+|++|+|++|.|++.....+
T Consensus       213 L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          213 LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             cCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            66666666655432    11223334556666666665554433333

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.29  E-value=7.4e-12  Score=125.26  Aligned_cols=105  Identities=17%  Similarity=0.234  Sum_probs=70.9

Q ss_pred             ceEeccCC-cCCccCCCCCCCCCCCcEEEccc-CCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEecc
Q 045837          221 SVVTFAHN-NFSGCVPRSIGNMPNVNEIILSN-NDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLS  298 (527)
Q Consensus       221 ~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  298 (527)
                      ..++++++ ++.+ ++. |..+.+|++|+|++ |.|++..+..|.++.+|++|+|++|+|++..+..|.++.+|++|+|+
T Consensus        11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            34566666 5653 555 77777777777775 77776666667777777777777777776666667777777777777


Q ss_pred             CCCCCCcchhhhhCCCCCcEEEecCcccCC
Q 045837          299 YNQLTGYVSEQICKLPNINNFTFSYNYFQG  328 (527)
Q Consensus       299 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  328 (527)
                      +|+|+++.+..+..+. |++|+|++|.|..
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            7777765555555544 7777777776654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.28  E-value=2.4e-13  Score=137.27  Aligned_cols=183  Identities=11%  Similarity=0.143  Sum_probs=116.3

Q ss_pred             CCCcEEEeecCcCcccCCccccc-----CCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcce
Q 045837          148 KLIYEFDVSNNRLVGSFPNVCLS-----WTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSV  222 (527)
Q Consensus       148 ~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~  222 (527)
                      ..|++|+|++|.++......+..     ..+|++|+|++|.++......+..                     ...+|++
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~---------------------~L~~L~~  130 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP---------------------VFLRARK  130 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH---------------------HHHTEEE
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH---------------------HHHhccH
Confidence            56888888888876432222222     257888888888776322222111                     0113566


Q ss_pred             EeccCCcCCccCCCCC-----CCCCCCcEEEcccCCCCCC----ChhhccCCCCCCEEEccCCccccc----CCcccCCC
Q 045837          223 VTFAHNNFSGCVPRSI-----GNMPNVNEIILSNNDLMGC----LPSEIGWLKKLTVFDASSNSFYGS----VPQSFSSL  289 (527)
Q Consensus       223 L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l  289 (527)
                      |+|++|.+.+.....+     ....+|++|+|++|.|++.    +...+..+.+|++|||++|.|+..    +...+..+
T Consensus       131 L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~  210 (372)
T 3un9_A          131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN  210 (372)
T ss_dssp             EECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC
T ss_pred             hhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC
Confidence            6666666654322222     2457899999999998742    344557789999999999998743    24456677


Q ss_pred             CCCcEEeccCCCCCCc----chhhhhCCCCCcEEEecCcccCCCCCCCCCCC---C--CCceec--CCCCCCC
Q 045837          290 ESIHRLVLSYNQLTGY----VSEQICKLPNINNFTFSYNYFQGLGNECIPGS---K--EGGVFD--DTSNCLA  351 (527)
Q Consensus       290 ~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l---~--~L~~L~--l~~N~l~  351 (527)
                      .+|++|+|++|.|++.    +...+..+++|++|+|++|.|++.....+..+   .  .|+.+.  +.+|.++
T Consensus       211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            8999999999999864    34456677899999999999875433222211   1  166665  5555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.27  E-value=1.3e-11  Score=123.55  Aligned_cols=101  Identities=14%  Similarity=0.222  Sum_probs=52.8

Q ss_pred             hhcccc-ccccccccccCC-CCcceEeccC-CcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCC
Q 045837          200 IFLNNN-RFSSWIPETIGE-STVSVVTFAH-NNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSN  276 (527)
Q Consensus       200 L~L~~n-~l~~~~~~~~~~-~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n  276 (527)
                      ++++++ +++. ++. +.. .+|++|+|++ |.|.+..+..|.++.+|++|+|++|+|++..+..|.++.+|++|||++|
T Consensus        13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            344444 4444 233 322 3455556653 5555544455555555666666666555555555555555666666666


Q ss_pred             cccccCCcccCCCCCCcEEeccCCCCC
Q 045837          277 SFYGSVPQSFSSLESIHRLVLSYNQLT  303 (527)
Q Consensus       277 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~  303 (527)
                      +|++..+..|..+. |+.|+|.+|.|.
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            55544333343333 555566555555

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.22  E-value=2.5e-10  Score=116.26  Aligned_cols=111  Identities=5%  Similarity=0.045  Sum_probs=80.4

Q ss_pred             CCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCC
Q 045837          236 RSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPN  315 (527)
Q Consensus       236 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  315 (527)
                      ..|.++.+|+.+.+.++... .....|.++.+|+.+++. +.++......|.++.+|+.++|.++ ++.+...+|.++.+
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             ceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            45667778888888765443 445567788888888886 3454455567888888888888754 55555677888888


Q ss_pred             CcEEEecCcccCCCCCCCCCCCCCCceecCCCCCC
Q 045837          316 INNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCL  350 (527)
Q Consensus       316 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l  350 (527)
                      |+.+.|..+ ++.+...+|.++.+|+.+++.+|..
T Consensus       336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence            888888654 6666677888888888888877654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.21  E-value=5e-10  Score=114.04  Aligned_cols=249  Identities=14%  Similarity=0.083  Sum_probs=122.1

Q ss_pred             eeeCCCCCCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCc--------
Q 045837           88 VFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNR--------  159 (527)
Q Consensus        88 v~c~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--------  159 (527)
                      |+-.....|.++.+|+.++|.++ ++.+-..+|.++.+|+.++|.++ ++.+-..+|.++.+|+.+.+..+-        
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF  136 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAF  136 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceee
Confidence            33344445778888888888643 55555567888888888888654 444444566666666655543321        


Q ss_pred             -------------CcccCCcccccCCcccEEecccCCCCCCcchhhhc--cccchhhccccccccccccc----------
Q 045837          160 -------------LVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPET----------  214 (527)
Q Consensus       160 -------------l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~--~~L~~L~L~~n~l~~~~~~~----------  214 (527)
                                   +.......|.++.+|+.+.+.++..  .+....+.  .+|+.+++..+ +.......          
T Consensus       137 ~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i  213 (394)
T 4fs7_A          137 KGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM  213 (394)
T ss_dssp             TTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred             ecccccccccCccccccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence                         1111223466677777777765432  33333333  45666655443 11111111          


Q ss_pred             -------------cCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhcc------------------
Q 045837          215 -------------IGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIG------------------  263 (527)
Q Consensus       215 -------------~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~------------------  263 (527)
                                   +....|+.+.+..+ +.......+.++.+|+.+.+..+... .....|.                  
T Consensus       214 ~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~  291 (394)
T 4fs7_A          214 EFPNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEK  291 (394)
T ss_dssp             CCCTTCCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTT
T ss_pred             ecCCCceEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeeccc
Confidence                         11223444444322 12122234555566666666554332 2222333                  


Q ss_pred             ---CCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCC
Q 045837          264 ---WLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEG  340 (527)
Q Consensus       264 ---~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  340 (527)
                         .+.+|+.+++.++ ++......|.++.+|+.++|.++ ++.+...+|.++.+|+.+++..| ++.+...+|.++.+|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence               3444444444332 22222334444555555555432 33333344555555555555444 444444455555555


Q ss_pred             ceecCC
Q 045837          341 GVFDDT  346 (527)
Q Consensus       341 ~~L~l~  346 (527)
                      +.+++.
T Consensus       369 ~~i~lp  374 (394)
T 4fs7_A          369 KKVELP  374 (394)
T ss_dssp             CEEEEE
T ss_pred             CEEEEC
Confidence            555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.13  E-value=6.1e-10  Score=113.39  Aligned_cols=103  Identities=9%  Similarity=0.023  Sum_probs=80.2

Q ss_pred             CCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCC
Q 045837          236 RSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPN  315 (527)
Q Consensus       236 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  315 (527)
                      ..|..+.+|+++.+.++ ++..-..+|.++.+|+.++|.++ ++......|.++.+|+.++|..| ++.+...+|.++.+
T Consensus       291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~  367 (394)
T 4fs7_A          291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN  367 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred             ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence            35777889999999765 55455667999999999999755 66555678999999999999877 77677789999999


Q ss_pred             CcEEEecCcccCCCCCCCCCCCCCCcee
Q 045837          316 INNFTFSYNYFQGLGNECIPGSKEGGVF  343 (527)
Q Consensus       316 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  343 (527)
                      |+.+++..+ ++.. ..+|.++.+|+.+
T Consensus       368 L~~i~lp~~-~~~~-~~~F~~c~~L~~I  393 (394)
T 4fs7_A          368 LKKVELPKR-LEQY-RYDFEDTTKFKWI  393 (394)
T ss_dssp             CCEEEEEGG-GGGG-GGGBCTTCEEEEE
T ss_pred             CCEEEECCC-CEEh-hheecCCCCCcEE
Confidence            999999766 3322 3467777777654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.07  E-value=3e-09  Score=108.22  Aligned_cols=248  Identities=7%  Similarity=0.086  Sum_probs=139.6

Q ss_pred             CCCcc-eEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCc---ccccccccccCCCCCcEEEeecCcCcccCCcccccC
Q 045837           96 NSNIT-VVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNR---FCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSW  171 (527)
Q Consensus        96 ~~~~~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  171 (527)
                      |.+++ .|+.+.|.++ ++.+-..+|.++.+|+.+.+.+|.   ++.+-..+|.++.+|+.+.+..+ ++......|.++
T Consensus        59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c  136 (394)
T 4gt6_A           59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHC  136 (394)
T ss_dssp             TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTC
T ss_pred             ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhh
Confidence            44443 3666666543 444444566666677776666542   44444455666666665555433 332333455556


Q ss_pred             CcccEEecccCCCCCCcchhhhc--cccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcE---
Q 045837          172 TSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNE---  246 (527)
Q Consensus       172 ~~L~~L~Ls~n~i~~~~p~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~---  246 (527)
                      .+|+.+.+..+. . .+....+.  .+|+.+.+..+ ++......|....|+.+.+..+-. ......|.++.+|+.   
T Consensus       137 ~~L~~i~lp~~~-~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~  212 (394)
T 4gt6_A          137 EELDTVTIPEGV-T-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVT-RIGTNAFSECFALSTITS  212 (394)
T ss_dssp             TTCCEEECCTTC-C-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCC-EECTTTTTTCTTCCEEEE
T ss_pred             ccccccccccee-e-eecccceecccccccccccce-eeEeccccccccceeEEEECCccc-ccccchhhhccccceecc
Confidence            666666664332 1 22222222  34444444332 222222223333444444432211 111222333333333   


Q ss_pred             ----------------------------------EEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCC
Q 045837          247 ----------------------------------IILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESI  292 (527)
Q Consensus       247 ----------------------------------L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  292 (527)
                                                        +.+.+ .++..-...|.++.+|+.+++.++..+ .....|.++.+|
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L  290 (394)
T 4gt6_A          213 DSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPAL  290 (394)
T ss_dssp             CCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTC
T ss_pred             cccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCccccccccc
Confidence                                              22221 122123446788899999999776543 555678889999


Q ss_pred             cEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCC
Q 045837          293 HRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRP  354 (527)
Q Consensus       293 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  354 (527)
                      +.+++. +.++.+....|.++.+|+.++|.++ ++.+...+|.++.+|+.+.+..+ ++.+.
T Consensus       291 ~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~  349 (394)
T 4gt6_A          291 QDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIP  349 (394)
T ss_dssp             CEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCC
T ss_pred             ccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEh
Confidence            999996 4566666778999999999999865 77777789999999999999654 55544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.01  E-value=1.5e-08  Score=102.31  Aligned_cols=130  Identities=8%  Similarity=0.057  Sum_probs=93.0

Q ss_pred             CcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEecc
Q 045837          219 TVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLS  298 (527)
Q Consensus       219 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  298 (527)
                      .++.+.+..+ +.......|.++.+|+.+.+..+ ++..-...|.++.+|+.+++..+ ++......|.++.+|+.+++.
T Consensus       218 ~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~  294 (379)
T 4h09_A          218 NLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMD  294 (379)
T ss_dssp             SCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEEC
T ss_pred             ccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccccc
Confidence            4555555433 33334455677788888888765 44344567788888888888654 443445678888899999998


Q ss_pred             CCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCC
Q 045837          299 YNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQR  353 (527)
Q Consensus       299 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  353 (527)
                      ++.++.+....|.++.+|+.++|..+ ++.+...+|.++.+|+.+.+..+ ++.+
T Consensus       295 ~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I  347 (379)
T 4h09_A          295 NSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLI  347 (379)
T ss_dssp             CTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEE
T ss_pred             ccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEE
Confidence            88888777778888899999998755 66666778888889988888654 4433

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.97  E-value=4.6e-10  Score=112.42  Aligned_cols=204  Identities=11%  Similarity=0.145  Sum_probs=109.8

Q ss_pred             cceEEEEEcCCCCcCC-CC-------ccccCCCCCCCEEEccCCccc---------ccccccccCCCCCcEEEeecCcCc
Q 045837           99 ITVVAGIDLNGNDIAG-YF-------PAELGWLSDLALFHVNSNRFC---------GIIPESLSNWKLIYEFDVSNNRLV  161 (527)
Q Consensus        99 ~~~L~~L~L~~n~l~~-~~-------~~~l~~l~~L~~L~Ls~n~i~---------~~~~~~~~~l~~L~~L~Ls~n~l~  161 (527)
                      ..+++.|.+....+.+ ..       ...+..+++|+.|.|.++.+.         +.+...+..+++|++|+|++|.-.
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence            3456677776555432 11       223445678888888664321         123344566778888888877311


Q ss_pred             ccCCcccccCCcccEEecccCCCCCCcchhhh---ccccchhhcccc--ccccccccccCCCCcceEeccCCcCCccCCC
Q 045837          162 GSFPNVCLSWTSLRYLDLRYNNFEGEVPRELF---KMKLDAIFLNNN--RFSSWIPETIGESTVSVVTFAHNNFSGCVPR  236 (527)
Q Consensus       162 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~---~~~L~~L~L~~n--~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  236 (527)
                       .+.. + .+.+|++|+|..|.+....-..+.   ..+|++|+|+.+  ...+.       .          .+.+ +..
T Consensus       186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~-------~----------~~~~-l~~  244 (362)
T 2ra8_A          186 -SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD-------G----------DMNV-FRP  244 (362)
T ss_dssp             -BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC-------S----------CGGG-TGG
T ss_pred             -eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc-------h----------hHHH-HHH
Confidence             1222 2 367788888877776532222222   134444444321  10000       0          0000 000


Q ss_pred             CC--CCCCCCcEEEcccCCCCCCChhhc---cCCCCCCEEEccCCcccccC----CcccCCCCCCcEEeccCCCCCCcch
Q 045837          237 SI--GNMPNVNEIILSNNDLMGCLPSEI---GWLKKLTVFDASSNSFYGSV----PQSFSSLESIHRLVLSYNQLTGYVS  307 (527)
Q Consensus       237 ~l--~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~~~  307 (527)
                      .+  ..+++|++|+|++|.+.+.....+   ..+++|++|||+.|.+.+..    ...+..+++|+.|+|++|.|+....
T Consensus       245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~  324 (362)
T 2ra8_A          245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK  324 (362)
T ss_dssp             GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred             HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence            11  246788888888887764332222   24677888888888776432    2223445778888888887775544


Q ss_pred             hhhhC-CCCCcEEEecCcc
Q 045837          308 EQICK-LPNINNFTFSYNY  325 (527)
Q Consensus       308 ~~l~~-l~~L~~L~Ls~N~  325 (527)
                      ..+.. +  ...+++++|+
T Consensus       325 ~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          325 KELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHc--CCEEEecCCc
Confidence            44443 2  3457777776

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.83  E-value=1.1e-07  Score=95.90  Aligned_cols=116  Identities=8%  Similarity=-0.005  Sum_probs=90.5

Q ss_pred             CCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCC
Q 045837          235 PRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLP  314 (527)
Q Consensus       235 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  314 (527)
                      ...+....+|+.+.+..+ +.......|.++..|+.+++..+ ++......|.++.+|+.+++..+ ++.+....|.++.
T Consensus       210 ~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~  286 (379)
T 4h09_A          210 AYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS  286 (379)
T ss_dssp             TTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred             ecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc
Confidence            345566778888888665 33345567888999999999876 55455567888999999999754 5555567889999


Q ss_pred             CCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCC
Q 045837          315 NINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRP  354 (527)
Q Consensus       315 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  354 (527)
                      +|+.+++.++.++.+...+|.++.+|+.+++..+ ++.+.
T Consensus       287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~  325 (379)
T 4h09_A          287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQ  325 (379)
T ss_dssp             TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEEC
T ss_pred             ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEH
Confidence            9999999999999888889999999999999755 55443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.78  E-value=2.2e-09  Score=107.51  Aligned_cols=131  Identities=14%  Similarity=0.166  Sum_probs=78.5

Q ss_pred             CCCcceEeccCCcCCccCCCCCC--CCCCCcEEEccc--CCCCCC-----Chhhc--cCCCCCCEEEccCCcccccCCcc
Q 045837          217 ESTVSVVTFAHNNFSGCVPRSIG--NMPNVNEIILSN--NDLMGC-----LPSEI--GWLKKLTVFDASSNSFYGSVPQS  285 (527)
Q Consensus       217 ~~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~--N~l~~~-----~p~~~--~~l~~L~~L~Ls~n~l~~~~p~~  285 (527)
                      ..+|++|+|..|.+.......+.  .+++|++|+|+.  |...+.     +...+  ..+++|++|+|.+|.+.+.....
T Consensus       192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~  271 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM  271 (362)
T ss_dssp             CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred             CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence            45677777777766543222332  577888888753  221111     11122  24678999999888876433222


Q ss_pred             c---CCCCCCcEEeccCCCCCCcc----hhhhhCCCCCcEEEecCcccCCCCCCCCCC-CCCCceecCCCCC
Q 045837          286 F---SSLESIHRLVLSYNQLTGYV----SEQICKLPNINNFTFSYNYFQGLGNECIPG-SKEGGVFDDTSNC  349 (527)
Q Consensus       286 ~---~~l~~L~~L~Ls~N~l~~~~----~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~l~~N~  349 (527)
                      +   ..+++|++|+|+.|.|++..    ...+..+++|+.|+|++|.|++..-..+.. +  ...+++++|.
T Consensus       272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            2   24678999999998887642    333456688999999988876532222221 1  2456777665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.63  E-value=7.4e-09  Score=93.55  Aligned_cols=109  Identities=14%  Similarity=0.156  Sum_probs=60.9

Q ss_pred             CcceEeccCC-cCCcc----CCCCCCCCCCCcEEEcccCCCCCC----ChhhccCCCCCCEEEccCCccccc----CCcc
Q 045837          219 TVSVVTFAHN-NFSGC----VPRSIGNMPNVNEIILSNNDLMGC----LPSEIGWLKKLTVFDASSNSFYGS----VPQS  285 (527)
Q Consensus       219 ~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~  285 (527)
                      +|++|+|++| .+...    +...+....+|++|+|++|.|...    +...+....+|++|+|++|.|...    +...
T Consensus        37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~  116 (185)
T 1io0_A           37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA  116 (185)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred             CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence            4555555555 55432    222344456677777777766532    233344456677777777766532    2334


Q ss_pred             cCCCCCCcEEec--cCCCCCCc----chhhhhCCCCCcEEEecCcccC
Q 045837          286 FSSLESIHRLVL--SYNQLTGY----VSEQICKLPNINNFTFSYNYFQ  327 (527)
Q Consensus       286 ~~~l~~L~~L~L--s~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~  327 (527)
                      +....+|++|+|  ++|.|+..    +.+.+....+|++|+|++|.+.
T Consensus       117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            555566777777  66666643    2334445566667776666653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.61  E-value=4.5e-09  Score=94.99  Aligned_cols=116  Identities=10%  Similarity=0.062  Sum_probs=90.6

Q ss_pred             CCCCCCCCCcEEEcccC-CCCCC----ChhhccCCCCCCEEEccCCccccc----CCcccCCCCCCcEEeccCCCCCCc-
Q 045837          236 RSIGNMPNVNEIILSNN-DLMGC----LPSEIGWLKKLTVFDASSNSFYGS----VPQSFSSLESIHRLVLSYNQLTGY-  305 (527)
Q Consensus       236 ~~l~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~-  305 (527)
                      ..+....+|++|+|++| .+...    +...+...++|++|+|++|.|...    +...+....+|++|+|++|.|+.. 
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            34566789999999999 88743    345567789999999999999742    233455668999999999999864 


Q ss_pred             ---chhhhhCCCCCcEEEe--cCcccCCCC----CCCCCCCCCCceecCCCCCCC
Q 045837          306 ---VSEQICKLPNINNFTF--SYNYFQGLG----NECIPGSKEGGVFDDTSNCLA  351 (527)
Q Consensus       306 ---~~~~l~~l~~L~~L~L--s~N~l~~~~----~~~~~~l~~L~~L~l~~N~l~  351 (527)
                         +.+.+....+|++|+|  ++|.|.+..    ...+.....|+.|++++|.|.
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence               4566778889999999  889987542    233456688999999999885

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.31  E-value=3.2e-08  Score=94.16  Aligned_cols=79  Identities=20%  Similarity=0.305  Sum_probs=43.9

Q ss_pred             CCCCCcEEEcccCCCCC--CChhhccCCCCCCEEEccCCcccccCCcccCCCC--CCcEEeccCCCCCCcch-------h
Q 045837          240 NMPNVNEIILSNNDLMG--CLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLE--SIHRLVLSYNQLTGYVS-------E  308 (527)
Q Consensus       240 ~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~~-------~  308 (527)
                      ++.+|++|+|++|.|++  .++..+..+.+|+.|+|++|+|++.  ..+..+.  +|++|+|++|.+.+.++       .
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            45567777777777664  2334455666666666666666643  1222222  66666666666654322       2


Q ss_pred             hhhCCCCCcEEE
Q 045837          309 QICKLPNINNFT  320 (527)
Q Consensus       309 ~l~~l~~L~~L~  320 (527)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            345556665554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.25  E-value=7.7e-07  Score=84.59  Aligned_cols=63  Identities=17%  Similarity=0.234  Sum_probs=31.9

Q ss_pred             CCCCCCEEEccCCcccc--cCCcccCCCCCCcEEeccCCCCCCcchhhhhCCC--CCcEEEecCcccCC
Q 045837          264 WLKKLTVFDASSNSFYG--SVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLP--NINNFTFSYNYFQG  328 (527)
Q Consensus       264 ~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~--~L~~L~Ls~N~l~~  328 (527)
                      ++.+|++|+|++|+|++  .++..+..+.+|+.|+|++|+|++.  ..+..+.  +|++|+|++|.+++
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence            34555555666555554  2233344555555566655555543  2222222  55555555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.07  E-value=1.9e-06  Score=76.05  Aligned_cols=82  Identities=11%  Similarity=0.060  Sum_probs=33.5

Q ss_pred             CCcEEEcccCCCCCCChhhccCCCCCCEEEccCCc-ccccCCcccCCC----CCCcEEeccCC-CCCCcchhhhhCCCCC
Q 045837          243 NVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNS-FYGSVPQSFSSL----ESIHRLVLSYN-QLTGYVSEQICKLPNI  316 (527)
Q Consensus       243 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l----~~L~~L~Ls~N-~l~~~~~~~l~~l~~L  316 (527)
                      +|++||+++|.|+..--..+.++++|++|+|++|. |+...-..+..+    .+|++|+|++| +|+...-..+.++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            34444444444443322333444444444444442 332211222222    13445555444 2443333334444445


Q ss_pred             cEEEecCc
Q 045837          317 NNFTFSYN  324 (527)
Q Consensus       317 ~~L~Ls~N  324 (527)
                      ++|+++++
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            55555444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.99  E-value=2.6e-06  Score=75.21  Aligned_cols=84  Identities=15%  Similarity=0.055  Sum_probs=66.1

Q ss_pred             ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCc-ccccccccccCC----CCCcEEEeecCc-CcccCCcccccCCc
Q 045837          100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNR-FCGIIPESLSNW----KLIYEFDVSNNR-LVGSFPNVCLSWTS  173 (527)
Q Consensus       100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~~~~l----~~L~~L~Ls~n~-l~~~~~~~~~~l~~  173 (527)
                      .+|+.|||+++.++..--..+.++++|++|+|++|. |+..--..+..+    .+|++|+|++|. |++.--..+..+.+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            469999999999877655677899999999999985 765444456654    379999999984 77554456778899


Q ss_pred             ccEEecccCC
Q 045837          174 LRYLDLRYNN  183 (527)
Q Consensus       174 L~~L~Ls~n~  183 (527)
                      |++|+|+++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999985

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.90  E-value=5.5e-06  Score=74.57  Aligned_cols=109  Identities=16%  Similarity=0.107  Sum_probs=63.7

Q ss_pred             CCcceEeccCC-cCCcc----CCCCCCCCCCCcEEEcccCCCCCC----ChhhccCCCCCCEEEccCCccccc----CCc
Q 045837          218 STVSVVTFAHN-NFSGC----VPRSIGNMPNVNEIILSNNDLMGC----LPSEIGWLKKLTVFDASSNSFYGS----VPQ  284 (527)
Q Consensus       218 ~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~  284 (527)
                      .+|++|+|++| .|...    +.+.+..-..|++|+|++|.|...    +...+...+.|++|+|++|.|...    +-+
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            34666666654 55431    223344556777777777777632    334445567777777777777632    223


Q ss_pred             ccCCCCCCcEEeccCC---CCCC----cchhhhhCCCCCcEEEecCccc
Q 045837          285 SFSSLESIHRLVLSYN---QLTG----YVSEQICKLPNINNFTFSYNYF  326 (527)
Q Consensus       285 ~~~~l~~L~~L~Ls~N---~l~~----~~~~~l~~l~~L~~L~Ls~N~l  326 (527)
                      .+.....|++|+|++|   .+..    .+.+.+....+|++|+++.|.+
T Consensus       121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            3455566777777755   3332    1344566667777777766643

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.83  E-value=5.9e-06  Score=74.36  Aligned_cols=114  Identities=12%  Similarity=0.018  Sum_probs=82.9

Q ss_pred             CCCCCCCcEEEcccC-CCCCC----ChhhccCCCCCCEEEccCCcccccC----CcccCCCCCCcEEeccCCCCCCc---
Q 045837          238 IGNMPNVNEIILSNN-DLMGC----LPSEIGWLKKLTVFDASSNSFYGSV----PQSFSSLESIHRLVLSYNQLTGY---  305 (527)
Q Consensus       238 l~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~---  305 (527)
                      +.+-..|++|+|++| .|...    +.+.+...+.|++|+|++|+|....    .+.+.....|++|+|++|+|...   
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            345578999999986 77632    4556777899999999999997432    33445668999999999999864   


Q ss_pred             -chhhhhCCCCCcEEEecCcc---cCCC----CCCCCCCCCCCceecCCCCCCC
Q 045837          306 -VSEQICKLPNINNFTFSYNY---FQGL----GNECIPGSKEGGVFDDTSNCLA  351 (527)
Q Consensus       306 -~~~~l~~l~~L~~L~Ls~N~---l~~~----~~~~~~~l~~L~~L~l~~N~l~  351 (527)
                       +.+.+.....|++|+|++|.   +...    +...+.....|..|++++|.+.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence             44567777889999998763   3321    1223455678899999887754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.89  E-value=0.0016  Score=54.41  Aligned_cols=36  Identities=17%  Similarity=0.176  Sum_probs=16.4

Q ss_pred             CCCEEEccCCcccccCCcccCCCCCCcEEeccCCCC
Q 045837          267 KLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQL  302 (527)
Q Consensus       267 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l  302 (527)
                      +|++|+|++|+|+..-...|..+.+|++|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            344455555544433333344444444444444443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.61  E-value=0.002  Score=53.88  Aligned_cols=58  Identities=24%  Similarity=0.354  Sum_probs=45.4

Q ss_pred             CEEEccCCccc-ccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCC
Q 045837          269 TVFDASSNSFY-GSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQG  328 (527)
Q Consensus       269 ~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  328 (527)
                      ..++.++++++ ..+|..+.  .+|++|+|++|+|+.+..+.|..+.+|++|+|++|.+..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            47888888886 35554443  478899999999988777788888899999999987754

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}

Probab=80.59  E-value=4.5  Score=36.21  Aligned_cols=13  Identities=15%  Similarity=0.174  Sum_probs=5.5

Q ss_pred             cccEEecccCCCC
Q 045837          173 SLRYLDLRYNNFE  185 (527)
Q Consensus       173 ~L~~L~Ls~n~i~  185 (527)
                      +|+.-++.++.+.
T Consensus        91 ~l~~~~f~~~~l~  103 (214)
T 2w7z_A           91 SFHRVTFLRCNLT  103 (214)
T ss_dssp             EEEEEEEESCBCT
T ss_pred             EEEeeEEeCCeee
Confidence            3444444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	527
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-08
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	7e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d2gqba1	130	a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {	8e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.6 bits (187), Expect = 5e-16
 Identities = 41/257 (15%), Positives = 79/257 (30%), Gaps = 13/257 (5%)

Query: 83  CSYYGVFCA-------PAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNR 135
           C    V C+       P     +  +   +DL  N I      +   L +L    + +N+
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPDTAL---LDLQNNKITEIKDGDFKNLKNLHTLILINNK 66

Query: 136 FCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM 195
              I P + +    +    +S N+L      +  +   LR  +         V   L +M
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 126

Query: 196 KLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLM 255
            +  +  N  + S                   +     +P+ +   P++ E+ L  N + 
Sbjct: 127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKIT 184

Query: 256 GCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPN 315
               + +  L  L     S NS       S ++   +  L L+ N+L             
Sbjct: 185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL-ADHKY 243

Query: 316 INNFTFSYNYFQGLGNE 332
           I       N    +G+ 
Sbjct: 244 IQVVYLHNNNISAIGSN 260

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.9 bits (128), Expect = 1e-08
 Identities = 33/206 (16%), Positives = 73/206 (35%), Gaps = 11/206 (5%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           + L+ N +          L +L +      +    +   L+   ++        +  G  
Sbjct: 84  LYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN-PLKSSGIE 142

Query: 165 PNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETI-GESTVSVV 223
                    L Y+ +   N    +P+ L    L  + L+ N+ +     ++ G + ++ +
Sbjct: 143 NGAFQGMKKLSYIRIADTNIT-TIPQGLPP-SLTELHLDGNKITKVDAASLKGLNNLAKL 200

Query: 224 TFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYG--- 280
             + N+ S     S+ N P++ E+ L+NN L+   P  +   K + V    +N+      
Sbjct: 201 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGS 259

Query: 281 ---SVPQSFSSLESIHRLVLSYNQLT 303
                P   +   S   + L  N + 
Sbjct: 260 NDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 28/212 (13%), Positives = 63/212 (29%), Gaps = 22/212 (10%)

Query: 45  KLPDNIENEKHMLLSKHSRRPYIRTRLTRQGNWVGTDVCSYYGVFCAPAPDNS--NITVV 102
           +LP+ +      L    +    +R  +    N +         +  +   + +   +  +
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 103 AGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVG 162
           + I +   +I        G    L   H++ N+   +   SL     + +  +S N +  
Sbjct: 153 SYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209

Query: 163 SFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSV 222
                  +   LR L L  N              +  ++L+NN  S+             
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF------- 262

Query: 223 VTFAHNNFSGCVPRSIGNMPNVNEIILSNNDL 254
                     C P       + + + L +N +
Sbjct: 263 ----------CPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 2/93 (2%)

Query: 258 LPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNIN 317
           +P ++       + D  +N         F +L+++H L+L  N+++         L  + 
Sbjct: 25  VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 318 NFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCL 350
               S N  + L  +     +E  V ++    +
Sbjct: 83  RLYLSKNQLKELPEKMPKTLQELRVHENEITKV 115

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 72.1 bits (175), Expect = 2e-14
 Identities = 52/280 (18%), Positives = 106/280 (37%), Gaps = 35/280 (12%)

Query: 76  NWV-GTDVC--SYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYF--PAELGWLSDLALFH 130
           +W+  TD C  ++ GV C     ++    V  +DL+G ++   +  P+ L  L  L   +
Sbjct: 26  SWLPTTDCCNRTWLGVLCDT---DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLY 82

Query: 131 VNSN-RFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVP 189
           +       G IP +++    ++   +++  + G+ P+      +L  LD  YN   G +P
Sbjct: 83  IGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142

Query: 190 RELFKMKLDAIF-LNNNRFSSWIPETIGESTVSVVTFAHNN------------------- 229
             +  +        + NR S  IP++ G  +    +   +                    
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV 202

Query: 230 -----FSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQ 284
                        +       + I    + +     ++G  K L   D  +N  YG++PQ
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262

Query: 285 SFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYN 324
             + L+ +H L +S+N L G + +    L   +   ++ N
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.0 bits (154), Expect = 7e-12
 Identities = 43/210 (20%), Positives = 80/210 (38%), Gaps = 2/210 (0%)

Query: 94  PDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEF 153
           P  + +T +  + +   +++G  P  L  +  L     + N   G +P S+S+   +   
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 154 DVSNNRLVGSFPNVCLSWTSLRYLDLRYNN-FEGEVPRELFKMKLDAIFLNNNRFSSWIP 212
               NR+ G+ P+   S++ L        N   G++P     + L  + L+ N       
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDAS 214

Query: 213 ETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFD 272
              G    +       N        +G   N+N + L NN + G LP  +  LK L   +
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274

Query: 273 ASSNSFYGSVPQSFSSLESIHRLVLSYNQL 302
            S N+  G +P    +L+       + N+ 
Sbjct: 275 VSFNNLCGEIP-QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 61.7 bits (148), Expect = 5e-11
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 5/248 (2%)

Query: 40  LPQDGKLPDNIENEKH---MLLSKHSRRPYIRTRLTRQGNWVGTDVCSYYGVFCAPAPDN 96
           LP+   +P ++ N  +   + +   +           +   +     ++  V  A     
Sbjct: 62  LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121

Query: 97  SNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNW-KLIYEFDV 155
           S I  +  +D + N ++G  P  +  L +L     + NR  G IP+S  ++ KL     +
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181

Query: 156 SNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETI 215
           S NRL G  P    +         R                   I L  N  +  + +  
Sbjct: 182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241

Query: 216 GESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASS 275
               ++ +   +N   G +P+ +  +  ++ + +S N+L G +P + G L++  V   ++
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYAN 300

Query: 276 NSFYGSVP 283
           N      P
Sbjct: 301 NKCLCGSP 308

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.8 bits (172), Expect = 8e-14
 Identities = 32/196 (16%), Positives = 62/196 (31%), Gaps = 36/196 (18%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           + LNGN +       L  L++L    + +N+   + P  LS    + E  +  N++    
Sbjct: 224 LSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 279

Query: 165 PNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVT 224
           P   L+  +         N   ++        L  + L  N  S   P            
Sbjct: 280 PLAGLTALTNLE---LNENQLEDISPISNLKNLTYLTLYFNNISDISP------------ 324

Query: 225 FAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQ 284
                        + ++  +  +  +NN +     S +  L  +    A  N      P 
Sbjct: 325 -------------VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP- 368

Query: 285 SFSSLESIHRLVLSYN 300
             ++L  I +L L+  
Sbjct: 369 -LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 69.3 bits (168), Expect = 2e-13
 Identities = 42/204 (20%), Positives = 73/204 (35%), Gaps = 14/204 (6%)

Query: 121 GWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLR 180
             L++L      +N+   I P        + E  ++ N+L         S T+L  LDL 
Sbjct: 194 AKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 181 YNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGN 240
            N      P      KL  + L  N+ S+  P        ++     N         I N
Sbjct: 250 NNQISNLAPLSGL-TKLTELKLGANQISNISPLA---GLTALTNLELNENQLEDISPISN 305

Query: 241 MPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYN 300
           + N+  + L  N++    P  +  L KL     ++N    S   S ++L +I+ L   +N
Sbjct: 306 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHN 361

Query: 301 QLTGYVSEQICKLPNINNFTFSYN 324
           Q++      +  L  I     +  
Sbjct: 362 QISD--LTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 64.3 bits (155), Expect = 1e-11
 Identities = 47/211 (22%), Positives = 81/211 (38%), Gaps = 16/211 (7%)

Query: 120 LGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL 179
           L  L+ L    ++SN+   I   +      +     +NN++    P      T+L  L L
Sbjct: 171 LANLTTLERLDISSNKVSDISVLAKLTN--LESLIATNNQISDITPLGI--LTNLDELSL 226

Query: 180 RYNNFEGEVPRELFKMK-LDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSI 238
             N  +      L  +  L  + L NN+ S+  P + G + ++ +    N  S   P  +
Sbjct: 227 NGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS-GLTKLTELKLGANQISNISP--L 281

Query: 239 GNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLS 298
             +  +  + L+ N       S I  LK LT      N+     P   SSL  + RL  +
Sbjct: 282 AGLTALTNLELNEN--QLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFA 337

Query: 299 YNQLTGYVSEQICKLPNINNFTFSYNYFQGL 329
            N+++      +  L NIN  +  +N    L
Sbjct: 338 NNKVSDV--SSLANLTNINWLSAGHNQISDL 366

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 6e-10
 Identities = 34/191 (17%), Positives = 64/191 (33%), Gaps = 6/191 (3%)

Query: 116 FPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLR 175
            PA    L  L   H++      + P        +    + +N L     +      +L 
Sbjct: 97  DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156

Query: 176 YLDLRYNNFEGEVPRELFKMK-LDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCV 234
           +L L  N       R    +  LD + L+ NR +   P    +    +  +   N    +
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216

Query: 235 -PRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIH 293
              ++  +  +  + L++N  + C          L  F  SS+    S+PQ  +  +   
Sbjct: 217 PTEALAPLRALQYLRLNDNPWV-CDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKR 275

Query: 294 RLVLSYNQLTG 304
              L+ N L G
Sbjct: 276 ---LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 7e-08
 Identities = 24/178 (13%), Positives = 52/178 (29%), Gaps = 6/178 (3%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           + L+   +    P     L+ L   ++  N    +  ++  +   +    +  NR+    
Sbjct: 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169

Query: 165 PNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAI--FLNNNRFSSWIPETIGESTVSV 222
                   SL  L L  N      P     +          NN  +           +  
Sbjct: 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 229

Query: 223 VTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYG 280
           +    N +  C  R+      + +   S++++   LP     L    +   ++N   G
Sbjct: 230 LRLNDNPWV-CDCRARPLWAWLQKFRGSSSEVPCSLPQR---LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 8e-08
 Identities = 22/129 (17%), Positives = 45/129 (34%), Gaps = 2/129 (1%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           + L+GN I+         L  L    ++ NR   + P +  +   +    +  N L    
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217

Query: 165 PNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVT 224
                   +L+YL L  N +  +         L     +++     +P+ +  +   +  
Sbjct: 218 TEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRL--AGRDLKR 275

Query: 225 FAHNNFSGC 233
            A N+  GC
Sbjct: 276 LAANDLQGC 284

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 9e-08
 Identities = 26/209 (12%), Positives = 55/209 (26%), Gaps = 7/209 (3%)

Query: 172 TSLRYLDLRYNNFEGEVP---RELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHN 228
            + + + L  N          R    + +  +  N          T       +    + 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 229 NFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSS 288
                 P +   +  ++ + L    L    P     L  L       N+       +F  
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 289 LESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSN 348
           L ++  L L  N+++         L +++      N    +                 +N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 349 CLAQRPSQKWATTCSPVV----SNPVDCS 373
            L+  P++  A   +        NP  C 
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCD 240

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 7e-06
 Identities = 25/149 (16%), Positives = 49/149 (32%), Gaps = 13/149 (8%)

Query: 178 DLRYNNFEGEVPRELFKMK-LDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPR 236
           +L+    E ++   + K        L+     S     +    + VV    ++ +  +  
Sbjct: 3   ELKPEQVE-QLKLIMSKRYDGSQQALDLKGLRS--DPDLVAQNIDVVLNRRSSMAATLRI 59

Query: 237 SIGNMPNVNEIILSNNDLMGC--LPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHR 294
              N+P +  + LSNN L     + S +     L + + S N               +  
Sbjct: 60  IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 119

Query: 295 LVLSYNQLT-------GYVSEQICKLPNI 316
           L L  N L+        Y+S    + P +
Sbjct: 120 LWLDGNSLSDTFRDQSTYISAIRERFPKL 148

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 29/123 (23%)

Query: 222 VVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDA-------- 273
           V+  AH + +  V   +  +  V  + LS+N L    P+ +  L+ L V  A        
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENV 58

Query: 274 --------------SSNSF-YGSVPQSFSSLESIHRLVLSYNQLT---GYVSEQICKLPN 315
                          +N     +  Q   S   +  L L  N L    G        LP+
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 316 INN 318
           +++
Sbjct: 119 VSS 121

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 5e-05
 Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 12/126 (9%)

Query: 175 RYLDLRYNNFEGEVPRELFKM-KLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGC 233
           R L L + +    V   L ++  +  + L++NR  +  P  +       V  A +N    
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN 57

Query: 234 VPRSIGNMPNVNEIILSNNDL-MGCLPSEIGWLKKLTVFDASSN------SFYGSVPQSF 286
           V   + N+P + E++L NN L        +    +L + +   N           + +  
Sbjct: 58  VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 287 SSLESI 292
            S+ SI
Sbjct: 117 PSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 4/84 (4%)

Query: 105 IDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF 164
           +DL+ N +    P  L  L    L  + ++       + ++N   + E  + NNRL  S 
Sbjct: 25  LDLSHNRLRALPP-ALAALR--CLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSA 81

Query: 165 PNVCLS-WTSLRYLDLRYNNFEGE 187
               L     L  L+L+ N+   E
Sbjct: 82  AIQPLVSCPRLVLLNLQGNSLCQE 105

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 5e-05
 Identities = 13/103 (12%), Positives = 30/103 (29%), Gaps = 4/103 (3%)

Query: 171 WTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNF 230
           W +L   DL   N   +V   L    + A     +     + E      V  +  +++  
Sbjct: 2   WQTL---DLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVI 58

Query: 231 SG-CVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFD 272
               +   +     +  + L    L   + + +     L   +
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 9e-05
 Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 144 LSNWKLIYEFDVSNNRL----VGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKM---- 195
                ++    +++  +      S     L+  SLR LDL  N        +L +     
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 196 --KLDAIFLNNNRFSSWIPETIGE 217
              L+ + L +  +S  + + +  
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQA 448

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 8e-04
 Identities = 9/121 (7%), Positives = 25/121 (20%), Gaps = 5/121 (4%)

Query: 243 NVNEIILSNNDL-MGCLPSEIGWLKKLTVFDASSNSF----YGSVPQSFSSLESIHRLVL 297
           ++  + +   +L        +  L++  V               +  +     ++  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 298 SYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQK 357
             N+L       + +     +        Q                           S  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 358 W 358
            
Sbjct: 123 L 123

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 9/87 (10%)

Query: 115 YFPAELGWLSDLALFHVNSNRF----CGIIPESLSNWKLIYEFDVSNNRLVGS-----FP 165
                    S L +  +         C  +  +L     + E D+SNN L  +       
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 166 NVCLSWTSLRYLDLRYNNFEGEVPREL 192
           +V      L  L L    +  E+   L
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRL 446

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 23/196 (11%), Positives = 57/196 (29%), Gaps = 5/196 (2%)

Query: 83  CSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPE 142
           C    +   P     + T+   + L+ N +  +  A L   + L   +++      +  +
Sbjct: 17  CDKRNLTALPPDLPKDTTI---LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD 73

Query: 143 SLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFL 202
                    +   +  + +        + T L     R  +      R       +    
Sbjct: 74  GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG-LGELQELYLK 132

Query: 203 NNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEI 262
            N   +           +  ++ A+NN +      +  + N++ ++L  N L   +P   
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191

Query: 263 GWLKKLTVFDASSNSF 278
                L       N +
Sbjct: 192 FGSHLLPFAFLHGNPW 207

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 13/101 (12%)

Query: 129 FHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSW------TSLRYLDLRYN 182
            +  ++     +  +L +W  + E  +++  L        +          L+ L L+YN
Sbjct: 224 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 283

Query: 183 NFEGEVPRELFKM------KLDAIFLNNNRFSSWIPETIGE 217
             E +  R L  +       L  + LN NRFS    + + E
Sbjct: 284 EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE-EDDVVDE 323

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	527
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.81
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.73
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.6
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.59
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.54
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.43
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.3
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.25
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.21
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.53
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.27
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.08
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.07
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.54
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.35

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=4.1e-35  Score=288.91  Aligned_cols=274  Identities=23%  Similarity=0.364  Sum_probs=242.8

Q ss_pred             CCCCC-CCCCcc--ccceeeCCCCCCCCcceEEEEEcCCCCcCCC--CccccCCCCCCCEEEccC-CcccccccccccCC
Q 045837           74 QGNWV-GTDVCS--YYGVFCAPAPDNSNITVVAGIDLNGNDIAGY--FPAELGWLSDLALFHVNS-NRFCGIIPESLSNW  147 (527)
Q Consensus        74 ~~~w~-~~~~c~--~~gv~c~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~-n~i~~~~~~~~~~l  147 (527)
                      +.+|. +.|+|.  |.||+|+..   ....+|+.|+|+++++.+.  ++..++++++|++|+|++ |++.|.+|..|+++
T Consensus        24 l~sW~~~~d~C~~~w~gv~C~~~---~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L  100 (313)
T d1ogqa_          24 LSSWLPTTDCCNRTWLGVLCDTD---TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL  100 (313)
T ss_dssp             GTTCCTTSCTTTTCSTTEEECCS---SSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC
T ss_pred             CCCCCCCCCCCCCcCCCeEEeCC---CCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccc
Confidence            45784 778995  999999752   3445899999999999874  678999999999999997 89999999999999


Q ss_pred             CCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhc-cccchhhccccccccccccccCC-CC-cceEe
Q 045837          148 KLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIGE-ST-VSVVT  224 (527)
Q Consensus       148 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~-L~~L~  224 (527)
                      .+|++|+|++|++.+..+..+..+.+|+++++++|.+.+.++..+.. .+++++++++|.+.+.++..++. .. ++.++
T Consensus       101 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~  180 (313)
T d1ogqa_         101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT  180 (313)
T ss_dssp             TTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE
T ss_pred             cccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccc
Confidence            99999999999999988888999999999999999999888888777 68999999999999888877654 33 58899


Q ss_pred             ccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCC
Q 045837          225 FAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTG  304 (527)
Q Consensus       225 L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  304 (527)
                      +++|++.+..+..+..+.. .+++++++.+.+.++..+..+.+|+.|++++|.+.+.++ .+..+.+|++|+|++|+|+|
T Consensus       181 ~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g  258 (313)
T d1ogqa_         181 ISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYG  258 (313)
T ss_dssp             CCSSEEEEECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEE
T ss_pred             ccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecc
Confidence            9999999988888888754 479999999999999999999999999999999997765 68888999999999999999


Q ss_pred             cchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCC-CCCC
Q 045837          305 YVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNC-LAQR  353 (527)
Q Consensus       305 ~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~  353 (527)
                      .+|..|+++++|++|+|++|+|+|.+|. +..+.+|+.+++++|. +++.
T Consensus       259 ~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             CCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred             cCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCC
Confidence            9999999999999999999999988875 5778899999999996 5543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=1.1e-28  Score=242.51  Aligned_cols=232  Identities=25%  Similarity=0.402  Sum_probs=212.9

Q ss_pred             CCCcceEEEEEcCC-CCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcc
Q 045837           96 NSNITVVAGIDLNG-NDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSL  174 (527)
Q Consensus        96 ~~~~~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  174 (527)
                      +.++++|++|+|++ |++.|.+|..|+++++|++|+|++|+|.+..+..+..+.+|+++++++|.+.+.++..+.++.+|
T Consensus        72 l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L  151 (313)
T d1ogqa_          72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL  151 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred             HhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCccc
Confidence            56789999999987 88999999999999999999999999999999899999999999999999999999999999999


Q ss_pred             cEEecccCCCCCCcchhhhc-c-ccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccC
Q 045837          175 RYLDLRYNNFEGEVPRELFK-M-KLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNN  252 (527)
Q Consensus       175 ~~L~Ls~n~i~~~~p~~~~~-~-~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N  252 (527)
                      +++++++|.+.+.++..+.. . .++.+++++|++++..+..++.....++++.++.+.+.++..+..+.+|++|++++|
T Consensus       152 ~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~  231 (313)
T d1ogqa_         152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN  231 (313)
T ss_dssp             CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred             ceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999889888776 3 458899999999999888888888889999999999999989999999999999999


Q ss_pred             CCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcc-cCCC
Q 045837          253 DLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNY-FQGL  329 (527)
Q Consensus       253 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~-l~~~  329 (527)
                      .+.+.++ .++.+++|++|+|++|+++|.+|..|+++++|++|+|++|+|+|.+|+ ++++.+|+.+++++|+ +.|.
T Consensus       232 ~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         232 SLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             EECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred             ccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCC
Confidence            9986655 688899999999999999999999999999999999999999998885 5788899999999997 5554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=4.9e-25  Score=215.34  Aligned_cols=265  Identities=19%  Similarity=0.214  Sum_probs=203.9

Q ss_pred             CccccceeeCCCCCC----CCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeec
Q 045837           82 VCSYYGVFCAPAPDN----SNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSN  157 (527)
Q Consensus        82 ~c~~~gv~c~~~~~~----~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~  157 (527)
                      .|.|.++.|......    .-.+.+++|+|++|+++.+....|.++.+|++|++++|.+..+.+..|.++.+|++|++++
T Consensus         9 ~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_           9 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            477888888653211    1236799999999999887666899999999999999999988888899999999999999


Q ss_pred             CcCcccCCcccccCCcccEEecccCCCCCCcchhhhc--cccchhhccccccccc--ccccc-CCCCcceEeccCCcCCc
Q 045837          158 NRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSW--IPETI-GESTVSVVTFAHNNFSG  232 (527)
Q Consensus       158 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~--~~L~~L~L~~n~l~~~--~~~~~-~~~~L~~L~L~~n~l~~  232 (527)
                      |+++. ++..+  ...|+.|++.+|.+. .+....+.  ..+..+++..|.....  ....+ +..+|+++++++|.+..
T Consensus        89 n~l~~-l~~~~--~~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~  164 (305)
T d1xkua_          89 NQLKE-LPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  164 (305)
T ss_dssp             SCCSB-CCSSC--CTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CccCc-Cccch--hhhhhhhhccccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc
Confidence            99984 44433  367889999999988 44444333  4566666666654332  22222 33568899999998874


Q ss_pred             cCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhC
Q 045837          233 CVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICK  312 (527)
Q Consensus       233 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  312 (527)
                       ++..  .+.+|++|++++|.+.+..+..|.++..+++|++++|.+++..+..+.++.+|++|+|++|+|+. ++.++.+
T Consensus       165 -l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~-lp~~l~~  240 (305)
T d1xkua_         165 -IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLAD  240 (305)
T ss_dssp             -CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTTT
T ss_pred             -cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccc-ccccccc
Confidence             3332  35789999999999888888888999999999999999988778888889999999999999985 4678888


Q ss_pred             CCCCcEEEecCcccCCCCCCCC------CCCCCCceecCCCCCCCCCC
Q 045837          313 LPNINNFTFSYNYFQGLGNECI------PGSKEGGVFDDTSNCLAQRP  354 (527)
Q Consensus       313 l~~L~~L~Ls~N~l~~~~~~~~------~~l~~L~~L~l~~N~l~~~~  354 (527)
                      +++|++|+|++|+|+.+....|      ....+|+.|++++|.+....
T Consensus       241 l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~  288 (305)
T d1xkua_         241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE  288 (305)
T ss_dssp             CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred             ccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCc
Confidence            9999999999999987755444      34567888999999886443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=4.3e-24  Score=208.57  Aligned_cols=264  Identities=17%  Similarity=0.250  Sum_probs=217.1

Q ss_pred             eEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecc
Q 045837          101 VVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLR  180 (527)
Q Consensus       101 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  180 (527)
                      ..+.++-++++++. +|..+.  ++|++|+|++|+|+.+...+|.++.+|++|++++|.+....+..|.++.+|++|+++
T Consensus        11 ~~~~~~C~~~~L~~-lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCCc-cCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            35678888888876 455553  689999999999997777789999999999999999998778889999999999999


Q ss_pred             cCCCCCCcchhhhccccchhhccccccccccccccCC-CCcceEeccCCcCCc--cCCCCCCCCCCCcEEEcccCCCCCC
Q 045837          181 YNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGE-STVSVVTFAHNNFSG--CVPRSIGNMPNVNEIILSNNDLMGC  257 (527)
Q Consensus       181 ~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~  257 (527)
                      +|+++ .++..+ ...++.|++.+|.+.+.....+.. ..+..+++..|....  .....+..+.+|+++++++|.+. .
T Consensus        88 ~n~l~-~l~~~~-~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~  164 (305)
T d1xkua_          88 KNQLK-ELPEKM-PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-T  164 (305)
T ss_dssp             SSCCS-BCCSSC-CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-S
T ss_pred             CCccC-cCccch-hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-c
Confidence            99998 666543 357888999999988765554433 456778877775443  34456888899999999999998 4


Q ss_pred             ChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCC
Q 045837          258 LPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGS  337 (527)
Q Consensus       258 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l  337 (527)
                      ++..  .+.+|++|++++|.+++..+..|.++..+++|++++|.+++....++.++++|++|+|++|+|+.+ +..|.++
T Consensus       165 l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p~~l~~l  241 (305)
T d1xkua_         165 IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADH  241 (305)
T ss_dssp             CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTC
T ss_pred             cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccc-ccccccc
Confidence            5543  368999999999999988888999999999999999999998889999999999999999999876 5689999


Q ss_pred             CCCceecCCCCCCCCCCCCCCC----------CcccccccCCCCCC
Q 045837          338 KEGGVFDDTSNCLAQRPSQKWA----------TTCSPVVSNPVDCS  373 (527)
Q Consensus       338 ~~L~~L~l~~N~l~~~~~~~~~----------~~~~~~~~np~~C~  373 (527)
                      ++|++|++++|.|+.+....+.          .....+.+|+|.+.
T Consensus       242 ~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~  287 (305)
T d1xkua_         242 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW  287 (305)
T ss_dssp             SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred             cCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccC
Confidence            9999999999999987643322          12234678888764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.4e-23  Score=201.13  Aligned_cols=204  Identities=15%  Similarity=0.179  Sum_probs=128.4

Q ss_pred             CCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecc-cCCCCCCcchh-hhc-cccchh
Q 045837          124 SDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLR-YNNFEGEVPRE-LFK-MKLDAI  200 (527)
Q Consensus       124 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~n~i~~~~p~~-~~~-~~L~~L  200 (527)
                      +++++|+|++|+|+++...+|.++.+|++|++++|++.......+..+..++.+++. .|.++ .+... +.. .+|++|
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~-~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTL  110 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccc-cccchhhcccccCCEE
Confidence            445666666666665555556666666666666666665555555555666665543 33333 33222 222 345555


Q ss_pred             hccccccccccccccCC-CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCccc
Q 045837          201 FLNNNRFSSWIPETIGE-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFY  279 (527)
Q Consensus       201 ~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~  279 (527)
                      ++++|.+.......+.. .+|+.+++++|.+++.....|..+.+|++|++++|++++..+..|.++++|++|++++|+++
T Consensus       111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~  190 (284)
T d1ozna_         111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (284)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccc
Confidence            55555554433333332 34677777777776655566667777777777777777666666777777777777777777


Q ss_pred             ccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCC
Q 045837          280 GSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQG  328 (527)
Q Consensus       280 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  328 (527)
                      +..+..|.++.+|++|++++|++.+..+..|.++.+|++|+|++|.+.+
T Consensus       191 ~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            6667777777777777777777777767777777777777777777664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.1e-24  Score=207.38  Aligned_cols=247  Identities=17%  Similarity=0.191  Sum_probs=201.1

Q ss_pred             ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEee-cCcCcccCCcccccCCcccEEe
Q 045837          100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVS-NNRLVGSFPNVCLSWTSLRYLD  178 (527)
Q Consensus       100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~  178 (527)
                      ..+++|+|++|+|+++....|.++++|++|++++|+|.++....+.++..++++++. .|.++...+..|.++.+|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            467999999999998777789999999999999999999888889999999999875 5667766678899999999999


Q ss_pred             cccCCCCCCcchhhhc-cccchhhccccccccccccccCC-CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCC
Q 045837          179 LRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIGE-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMG  256 (527)
Q Consensus       179 Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  256 (527)
                      +++|.+.......+.. .+|+.+++.+|.+++.....+.. .+|++|++++|++.+.....|.++++|++|++++|++++
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            9999997443333333 68999999999999877777754 569999999999998888899999999999999999998


Q ss_pred             CChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcch-hhhhCCCCCcEEEecCcccCCCCCCCCC
Q 045837          257 CLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVS-EQICKLPNINNFTFSYNYFQGLGNECIP  335 (527)
Q Consensus       257 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  335 (527)
                      ..+..|.++.+|++||+++|++.+..+..|..+.+|++|+|++|.+...-. .++.  ..++.+....+++.+..+..+.
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~--~~l~~~~~~~~~~~C~~p~~l~  269 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW--AWLQKFRGSSSEVPCSLPQRLA  269 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHH--HHHHHCCSEECCCBEEESGGGT
T ss_pred             cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHHH--HHHHhCcCCCCceEeCCchHHc
Confidence            889999999999999999999998888889999999999999999885422 1111  1234455556666655554443


Q ss_pred             CCCCCceecCCCCCCC
Q 045837          336 GSKEGGVFDDTSNCLA  351 (527)
Q Consensus       336 ~l~~L~~L~l~~N~l~  351 (527)
                         .+...+++.+.|+
T Consensus       270 ---g~~l~~l~~~~l~  282 (284)
T d1ozna_         270 ---GRDLKRLAANDLQ  282 (284)
T ss_dssp             ---TCBGGGSCGGGSC
T ss_pred             ---CCccccCCHHHCC
Confidence               3445555555554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.90  E-value=8.6e-23  Score=205.30  Aligned_cols=241  Identities=17%  Similarity=0.257  Sum_probs=172.9

Q ss_pred             CcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCC------------
Q 045837           98 NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFP------------  165 (527)
Q Consensus        98 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------  165 (527)
                      .+++|++|+|++|+++++.  .|+++++|++|++++|+|.+..  .++++.+|++|++++|.+++...            
T Consensus        64 ~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~  139 (384)
T d2omza2          64 YLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL  139 (384)
T ss_dssp             GCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEE
T ss_pred             cCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--ccccccccccccccccccccccccccccccccccc
Confidence            4678999999999988753  4888999999999999988653  37888999999988876643110            


Q ss_pred             ---------------------------------------------------cccccCCcccEEecccCCCCCCcchhhhc
Q 045837          166 ---------------------------------------------------NVCLSWTSLRYLDLRYNNFEGEVPRELFK  194 (527)
Q Consensus       166 ---------------------------------------------------~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~  194 (527)
                                                                         ..+..+.+++.|++++|.+++ +......
T Consensus       140 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~-~~~~~~~  218 (384)
T d2omza2         140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD-ITPLGIL  218 (384)
T ss_dssp             EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-CGGGGGC
T ss_pred             ccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCC-CCccccc
Confidence                                                               122345667777888877773 3333334


Q ss_pred             cccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEcc
Q 045837          195 MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDAS  274 (527)
Q Consensus       195 ~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  274 (527)
                      .+|++|++++|.++.. .......+|++|++++|.+.+..  .++.+.+|++|++++|.+++. . .+..+..++.++++
T Consensus       219 ~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~-~-~~~~~~~l~~l~~~  293 (384)
T d2omza2         219 TNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNI-S-PLAGLTALTNLELN  293 (384)
T ss_dssp             TTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCSEEECC
T ss_pred             CCCCEEECCCCCCCCc-chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCC-C-cccccccccccccc
Confidence            6788888888877763 22233456888888888877543  366777888888888887743 2 35667777777777


Q ss_pred             CCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCC
Q 045837          275 SNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRP  354 (527)
Q Consensus       275 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  354 (527)
                      +|++++.  ..+..+.++++|++++|++++..  .+..+++|++|++++|+|+++.  .+.++++|++|++++|.|+++.
T Consensus       294 ~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l~--~l~~l~~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         294 ENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLT  367 (384)
T ss_dssp             SSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCBCG
T ss_pred             ccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCCh--hHcCCCCCCEEECCCCcCCCCh
Confidence            7777642  34667778888888888888753  3778888888888888887642  4777888888888888888654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.6e-23  Score=197.10  Aligned_cols=200  Identities=16%  Similarity=0.200  Sum_probs=138.1

Q ss_pred             ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837          100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL  179 (527)
Q Consensus       100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  179 (527)
                      ..+.+++.++++++. +|..+.  ++|++|+|++|+|+++...+|.++++|++|+|++|+|+.. + .+..+.+|++|+|
T Consensus        10 ~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccccc
Confidence            445667899988886 565553  5789999999999887777889999999999999998743 2 4567888999999


Q ss_pred             ccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCCh
Q 045837          180 RYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLP  259 (527)
Q Consensus       180 s~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  259 (527)
                      ++|++++ ++..+.                      ...+|++|++++|.+.+.....+..+.++++|++++|.+++..+
T Consensus        85 s~N~l~~-~~~~~~----------------------~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~  141 (266)
T d1p9ag_          85 SHNQLQS-LPLLGQ----------------------TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP  141 (266)
T ss_dssp             CSSCCSS-CCCCTT----------------------TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             ccccccc-cccccc----------------------cccccccccccccccceeeccccccccccccccccccccceecc
Confidence            9888873 222211                      22345566666666655555556666677777777777665555


Q ss_pred             hhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCC
Q 045837          260 SEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQG  328 (527)
Q Consensus       260 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  328 (527)
                      ..+..+.+|+.|++++|++++..+..|..+.+|++|+|++|+|+ .+++.+..+.+|+.|+|++|.+..
T Consensus       142 ~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            55666667777777777776655566666677777777777776 455556666677777777776643

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.88  E-value=4.2e-22  Score=200.17  Aligned_cols=239  Identities=18%  Similarity=0.244  Sum_probs=174.7

Q ss_pred             CcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEE
Q 045837           98 NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYL  177 (527)
Q Consensus        98 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  177 (527)
                      .+.+|++|+++++++..+  +.+..+++|++|+|++|+|++..  .|+++.+|++|++++|++.+..  .+.++.+|+.|
T Consensus        42 ~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L  115 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGL  115 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEE
T ss_pred             HhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--ccccccccccc
Confidence            456799999999999874  47889999999999999999764  3899999999999999998543  47889999999


Q ss_pred             ecccCCCCCCcchhhhc---------------------------------------------------------------
Q 045837          178 DLRYNNFEGEVPRELFK---------------------------------------------------------------  194 (527)
Q Consensus       178 ~Ls~n~i~~~~p~~~~~---------------------------------------------------------------  194 (527)
                      ++++|.+++.... ...                                                               
T Consensus       116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (384)
T d2omza2         116 TLFNNQITDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA  194 (384)
T ss_dssp             ECCSSCCCCCGGG-TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred             ccccccccccccc-cccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccc
Confidence            9999887632111 110                                                               


Q ss_pred             --cccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEE
Q 045837          195 --MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFD  272 (527)
Q Consensus       195 --~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  272 (527)
                        .+++.+++++|.+++..+ .....+|++|++++|.+.+.  ..+..+.+|++|++++|.+++..  .+..+.+|++|+
T Consensus       195 ~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~  269 (384)
T d2omza2         195 KLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELK  269 (384)
T ss_dssp             GCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEE
T ss_pred             cccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCEee
Confidence              224444455555544322 12234567777777766643  24566677777777777776432  366677777777


Q ss_pred             ccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCC
Q 045837          273 ASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQ  352 (527)
Q Consensus       273 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  352 (527)
                      +++|++++..  .+..+..++.+++++|.+++.  ..+..+.++++|++++|+++++.  .+..+++|++|++++|.|++
T Consensus       270 l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~  343 (384)
T d2omza2         270 LGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD  343 (384)
T ss_dssp             CCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC
T ss_pred             ccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC
Confidence            7777776432  356667777777777777754  35778899999999999999874  37889999999999999987


Q ss_pred             CC
Q 045837          353 RP  354 (527)
Q Consensus       353 ~~  354 (527)
                      +.
T Consensus       344 l~  345 (384)
T d2omza2         344 VS  345 (384)
T ss_dssp             CG
T ss_pred             Ch
Confidence            65

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.2e-21  Score=187.01  Aligned_cols=203  Identities=16%  Similarity=0.133  Sum_probs=168.4

Q ss_pred             CCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchh
Q 045837          121 GWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAI  200 (527)
Q Consensus       121 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L  200 (527)
                      .+...+.+++.++++++. +|..+.  ++|++|+|++|+|++.....|.++.+|++|+|++|+|+ .++..         
T Consensus         7 ~~~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~---------   73 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD---------   73 (266)
T ss_dssp             ECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC---------
T ss_pred             cccCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccc---------
Confidence            455677788999988884 565553  47899999999998766677888999999999999887 33221         


Q ss_pred             hccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccc
Q 045837          201 FLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYG  280 (527)
Q Consensus       201 ~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  280 (527)
                                    ....+|++|+|++|++.+ ....+.++.+|++|++++|.+.+.....+..+.+|++|++++|.+++
T Consensus        74 --------------~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~  138 (266)
T d1p9ag_          74 --------------GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT  138 (266)
T ss_dssp             --------------SCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred             --------------cccccccccccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccce
Confidence                          123457888888888774 35578899999999999999997777788899999999999999997


Q ss_pred             cCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCC
Q 045837          281 SVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQ  352 (527)
Q Consensus       281 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  352 (527)
                      ..+..+..+.+|+.|++++|+|+++..+.|..+.+|++|+|++|+|+. ++..+..+.+|+.|+|++|.+..
T Consensus       139 l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~-lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCC
T ss_pred             eccccccccccchhcccccccccccCccccccccccceeecccCCCcc-cChhHCCCCCCCEEEecCCCCCC
Confidence            777788889999999999999999888889999999999999999995 46677789999999999998763

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=3.9e-20  Score=172.08  Aligned_cols=188  Identities=15%  Similarity=0.212  Sum_probs=87.9

Q ss_pred             CCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchh
Q 045837          121 GWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAI  200 (527)
Q Consensus       121 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L  200 (527)
                      ..+.+|++|++.+|+|+..  ..+.++++|++|++++|++++..  .+..+.+|++|++++|.++ .+.......+|+.+
T Consensus        38 ~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i~~l~~l~~L~~l  112 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NVSAIAGLQSIKTL  112 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CCGGGTTCTTCCEE
T ss_pred             HHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccc-cccccccccccccc
Confidence            3344555555555555432  23445555555555555554321  2444555555555555444 22211111233333


Q ss_pred             hccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccc
Q 045837          201 FLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYG  280 (527)
Q Consensus       201 ~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  280 (527)
                      +++++.+.+.. .......++.+.++++.+....  .+..+.+|++|++++|.+.+..  .++++.+|++|+|++|++++
T Consensus       113 ~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         113 DLTSTQITDVT-PLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             ECTTSCCCCCG-GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred             ccccccccccc-hhccccchhhhhchhhhhchhh--hhccccccccccccccccccch--hhcccccceecccCCCccCC
Confidence            33333322211 1112233445555555444321  2445556666666666555221  25556666666666666553


Q ss_pred             cCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEec
Q 045837          281 SVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFS  322 (527)
Q Consensus       281 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls  322 (527)
                       + ..+.++++|++|+|++|+|+++.  .+.++++|++|+++
T Consensus       188 -l-~~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         188 -I-SPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             -C-GGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             -C-hhhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence             2 23555566666666666665432  25556666666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=2.3e-18  Score=159.92  Aligned_cols=189  Identities=14%  Similarity=0.263  Sum_probs=156.0

Q ss_pred             CCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccE
Q 045837           97 SNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRY  176 (527)
Q Consensus        97 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  176 (527)
                      ..+.+|+.|++.+|+++..  ..+..+++|++|+|++|+|++..  .|.++.+|++|++++|.++..  ..+.++.+|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~  111 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIKT  111 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred             HHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc--ccccccccccc
Confidence            3567899999999999874  46899999999999999998754  389999999999999998743  35788999999


Q ss_pred             EecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCC
Q 045837          177 LDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMG  256 (527)
Q Consensus       177 L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  256 (527)
                      |+++++.+. .+........++.+.++++.+.... ......+|++|++++|.+.+..  .++++.+|++|+|++|.+++
T Consensus       112 l~l~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         112 LDLTSTQIT-DVTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             EECTTSCCC-CCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred             ccccccccc-ccchhccccchhhhhchhhhhchhh-hhccccccccccccccccccch--hhcccccceecccCCCccCC
Confidence            999999887 4444344468888899888887643 2345567999999999988643  48899999999999999984


Q ss_pred             CChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccC
Q 045837          257 CLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSY  299 (527)
Q Consensus       257 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  299 (527)
                       ++ .++++++|++|+|++|++++. + .+.++++|+.|+|++
T Consensus       188 -l~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         188 -IS-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             -CG-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             -Ch-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence             44 488999999999999999854 3 488999999999974

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.4e-17  Score=156.08  Aligned_cols=218  Identities=11%  Similarity=0.063  Sum_probs=143.0

Q ss_pred             EEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccC-CcccccCCcccEEeccc
Q 045837          103 AGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF-PNVCLSWTSLRYLDLRY  181 (527)
Q Consensus       103 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~  181 (527)
                      +.++.++.+++. +|..+.  +++++|+|++|+|+.+...+|.++.+|++|+|++|.+...+ ...|.++.++++|++..
T Consensus        11 ~~i~c~~~~l~~-iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVTE-IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCSS-CCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCCC-cCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            467788887774 554442  57999999999998777778999999999999999887544 44677888999988764


Q ss_pred             -CCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCC-CCCCCCCCCcEEEcccCCCCCCCh
Q 045837          182 -NNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVP-RSIGNMPNVNEIILSNNDLMGCLP  259 (527)
Q Consensus       182 -n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p  259 (527)
                       |.+.......+.                      +..+|++|++++|++..... ..+..+..+..+...++.+.....
T Consensus        88 ~n~l~~~~~~~~~----------------------~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~  145 (242)
T d1xwdc1          88 ANNLLYINPEAFQ----------------------NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER  145 (242)
T ss_dssp             CTTCCEECTTSEE----------------------CCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECT
T ss_pred             ccccccccccccc----------------------ccccccccccchhhhcccccccccccccccccccccccccccccc
Confidence             555422222111                      12345555555555543221 123344555555666666664444


Q ss_pred             hhccCCC-CCCEEEccCCcccccCCcccCCCCCCcE-EeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCC
Q 045837          260 SEIGWLK-KLTVFDASSNSFYGSVPQSFSSLESIHR-LVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGS  337 (527)
Q Consensus       260 ~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~-L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l  337 (527)
                      ..|.++. .++.|++++|+++......+. ..++++ +++++|+|+.+....|.++.+|++|+|++|+|+.+....|.++
T Consensus       146 ~~~~~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l  224 (242)
T d1xwdc1         146 NSFVGLSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL  224 (242)
T ss_dssp             TSSTTSBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTC
T ss_pred             cccccccccceeeeccccccccccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCC
Confidence            4555543 677788888887744443343 344444 4567777876655667788888888888888887766677777


Q ss_pred             CCCceecCC
Q 045837          338 KEGGVFDDT  346 (527)
Q Consensus       338 ~~L~~L~l~  346 (527)
                      .+|+.+++.
T Consensus       225 ~~L~~l~~~  233 (242)
T d1xwdc1         225 KKLRARSTY  233 (242)
T ss_dssp             CEEESSSEE
T ss_pred             cccccCcCC
Confidence            777776664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.3e-17  Score=154.56  Aligned_cols=217  Identities=13%  Similarity=0.103  Sum_probs=137.8

Q ss_pred             ccccceeeCCCCC----CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCccccc-ccccccCCCCCcEEEeec
Q 045837           83 CSYYGVFCAPAPD----NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGI-IPESLSNWKLIYEFDVSN  157 (527)
Q Consensus        83 c~~~gv~c~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~  157 (527)
                      |....+.|.....    ..-..++++|+|++|.++.+....|.++++|++|+|++|.+... ....|.++..+++|++.+
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            4455566653220    11235799999999999886666899999999999999998764 355789999999999864


Q ss_pred             -CcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCC
Q 045837          158 -NRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPR  236 (527)
Q Consensus       158 -n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  236 (527)
                       |++.......|.++.+|++|++++|.+. .++.......+                    ..+..+...++.+......
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~~~l--------------------~~l~~~~~~n~~l~~i~~~  146 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSL--------------------QKVLLDIQDNINIHTIERN  146 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCC-SCCCCTTTCBS--------------------SCEEEEEESCTTCCEECTT
T ss_pred             cccccccccccccccccccccccchhhhc-ccccccccccc--------------------ccccccccccccccccccc
Confidence             6777777788999999999999999987 33222111111                    1233333334444433333


Q ss_pred             CCCCC-CCCcEEEcccCCCCCCChhhccCCCCCCEE-EccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCC
Q 045837          237 SIGNM-PNVNEIILSNNDLMGCLPSEIGWLKKLTVF-DASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLP  314 (527)
Q Consensus       237 ~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L-~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  314 (527)
                      .|..+ ..++.|++++|++++.....+ ...+++++ ++++|+++..-...|.++.+|++|+|++|+|+.+....|.++.
T Consensus       147 ~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~  225 (242)
T d1xwdc1         147 SFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK  225 (242)
T ss_dssp             SSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCC
T ss_pred             ccccccccceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCc
Confidence            34443 356667777777763333333 33343333 4566666643334567777777777777777755445555555


Q ss_pred             CCcEEEe
Q 045837          315 NINNFTF  321 (527)
Q Consensus       315 ~L~~L~L  321 (527)
                      +|+.+++
T Consensus       226 ~L~~l~~  232 (242)
T d1xwdc1         226 KLRARST  232 (242)
T ss_dssp             EEESSSE
T ss_pred             ccccCcC
Confidence            5555444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=4.1e-17  Score=148.12  Aligned_cols=162  Identities=19%  Similarity=0.288  Sum_probs=86.6

Q ss_pred             CCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhh
Q 045837          122 WLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIF  201 (527)
Q Consensus       122 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~  201 (527)
                      .+.+|++|++++|+|...  +.+..+++|++|+|++|++++..  .+.++.+|++|++++|.+. .++. +         
T Consensus        38 ~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~-~~~~-l---------  102 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DITP-L---------  102 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG-G---------
T ss_pred             HhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCcccccccccccccc-cccc-c---------
Confidence            344555666666555532  23455566666666666655332  2555566666666665554 1111 0         


Q ss_pred             ccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCccccc
Q 045837          202 LNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGS  281 (527)
Q Consensus       202 L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~  281 (527)
                                   .+...|++|++++|.+...  ..+..+.+|++|++++|.+. .++ .+..+.+|++|++++|++++.
T Consensus       103 -------------~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l  165 (199)
T d2omxa2         103 -------------ANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDL  165 (199)
T ss_dssp             -------------TTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC
T ss_pred             -------------ccccccccccccccccccc--cccchhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccCC
Confidence                         0112234444444433322  23455666777777777665 332 456666777777777766643


Q ss_pred             CCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEE
Q 045837          282 VPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNF  319 (527)
Q Consensus       282 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  319 (527)
                        ..+.++++|++|+|++|+|+++  ..+.++++|++|
T Consensus       166 --~~l~~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         166 --KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             --GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             --ccccCCCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence              2356666777777777766653  245666666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=3.1e-17  Score=150.20  Aligned_cols=165  Identities=16%  Similarity=0.260  Sum_probs=91.0

Q ss_pred             CCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhc
Q 045837          123 LSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFL  202 (527)
Q Consensus       123 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L  202 (527)
                      +.+|++|++++|+|....  .+..+++|++|+|++|+|++..  .+..+.+|++|++++|+++ .++..           
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~-~l~~l-----------  108 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK-DLSSL-----------  108 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CGGGG-----------
T ss_pred             hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc-ccccc-----------
Confidence            344555555555554321  2444555555555555554321  2344555555555555554 22110           


Q ss_pred             cccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccC
Q 045837          203 NNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSV  282 (527)
Q Consensus       203 ~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~  282 (527)
                                  ....+|+.|++++|.+...  ..+..+.+|+++++++|.+++.  ..+..+++|+++++++|++++. 
T Consensus       109 ------------~~l~~L~~L~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-  171 (210)
T d1h6ta2         109 ------------KDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-  171 (210)
T ss_dssp             ------------TTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-
T ss_pred             ------------ccccccccccccccccccc--cccccccccccccccccccccc--cccccccccccccccccccccc-
Confidence                        0112344444444443321  2355666777777777777632  2456677777777777777643 


Q ss_pred             CcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecC
Q 045837          283 PQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSY  323 (527)
Q Consensus       283 p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~  323 (527)
                      . .+.++.+|++|+|++|+|+++  ..+.++++|++|+|++
T Consensus       172 ~-~l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         172 V-PLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFS  209 (210)
T ss_dssp             G-GGTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEE
T ss_pred             c-cccCCCCCCEEECCCCCCCCC--hhhcCCCCCCEEEccC
Confidence            2 366777778888887777753  2477777788877753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=6.4e-17  Score=148.09  Aligned_cols=166  Identities=16%  Similarity=0.252  Sum_probs=125.8

Q ss_pred             CcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEE
Q 045837           98 NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYL  177 (527)
Q Consensus        98 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  177 (527)
                      .+..|+.|+++++.+.+..  .+..+++|++|+|++|+|++..  .++++++|++|++++|++++. + .+.++.+|+.|
T Consensus        44 ~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSL  117 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEE
T ss_pred             HhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccccc-c-ccccccccccc
Confidence            3567899999999998753  5888999999999999998754  478899999999999999853 3 57889999999


Q ss_pred             ecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCC
Q 045837          178 DLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC  257 (527)
Q Consensus       178 ~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  257 (527)
                      ++++|.+. .+....                       ....++++++++|.+.+.  ..+..+++|+++++++|++++ 
T Consensus       118 ~l~~~~~~-~~~~l~-----------------------~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~-  170 (210)
T d1h6ta2         118 SLEHNGIS-DINGLV-----------------------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-  170 (210)
T ss_dssp             ECTTSCCC-CCGGGG-----------------------GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-
T ss_pred             cccccccc-cccccc-----------------------cccccccccccccccccc--ccccccccccccccccccccc-
Confidence            99999886 332211                       123455666666665532  235667788888888888874 


Q ss_pred             ChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccC
Q 045837          258 LPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSY  299 (527)
Q Consensus       258 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  299 (527)
                      +. .++++++|++|+|++|+++. ++ .+.++++|++|+|++
T Consensus       171 i~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         171 IV-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CG-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             cc-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            33 37788888888888888874 43 578888888888864

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=2e-17  Score=149.36  Aligned_cols=129  Identities=19%  Similarity=0.308  Sum_probs=76.9

Q ss_pred             ccEEecccCCCCCCcchhhhccccchhhcccccccccc-ccccC-CCCcceEeccCCcCCccCCCCCCCCCCCcEEEccc
Q 045837          174 LRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWI-PETIG-ESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSN  251 (527)
Q Consensus       174 L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~-~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  251 (527)
                      .+.+++++++++ .+|..+. .++++|+|++|+|++.+ ...|+ ..+|++|+|++|.+.......|..+.+|++|+|++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp-~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcC-ccCCCCC-CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            457788888887 6776543 45666666666665433 22222 34466666666666655555566666666666666


Q ss_pred             CCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCC
Q 045837          252 NDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTG  304 (527)
Q Consensus       252 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  304 (527)
                      |+|++..+..|.++.+|++|+|++|+|++..+..|..+.+|++|+|++|.+..
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            66665445555666666666666666665555555566666666666665554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.69  E-value=1.2e-15  Score=150.08  Aligned_cols=59  Identities=20%  Similarity=0.217  Sum_probs=40.9

Q ss_pred             CCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCC
Q 045837          289 LESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPS  355 (527)
Q Consensus       289 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  355 (527)
                      +++|++|+|++|+|+. ++.   .+++|++|+|++|+|+.+ +.   .+.+|+.|++++|.|+.++.
T Consensus       283 ~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~L~~l-~~---~~~~L~~L~L~~N~L~~lp~  341 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIE-LPA---LPPRLERLIASFNHLAEV-PE---LPQNLKQLHVEYNPLREFPD  341 (353)
T ss_dssp             CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCCC
T ss_pred             CCCCCEEECCCCccCc-ccc---ccCCCCEEECCCCcCCcc-cc---ccCCCCEEECcCCcCCCCCc
Confidence            4578888888888774 333   356788888888888754 22   23567888888888877653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=4.7e-17  Score=146.82  Aligned_cols=175  Identities=14%  Similarity=0.171  Sum_probs=113.7

Q ss_pred             chhhccccccccccccccCCCCcceEeccCCcCCccC-CCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCC
Q 045837          198 DAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCV-PRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSN  276 (527)
Q Consensus       198 ~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n  276 (527)
                      +.++.++++++. ++..+. ..+++|+|++|+|++.+ ...|.++.+|++|+|++|.+.+.....|..+.+|++|+|++|
T Consensus        11 ~~v~Cs~~~L~~-iP~~lp-~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKE-IPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSS-CCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCc-cCCCCC-CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            456677777765 333332 45777788888776533 445677777888888877777677777777777888888888


Q ss_pred             cccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCC-CCCC
Q 045837          277 SFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLA-QRPS  355 (527)
Q Consensus       277 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~  355 (527)
                      +|++..+..|.++.+|++|+|++|+|+++.++.|..+.+|++|+|++|.+.+.....+ -...++.+.+..|.++ ..+.
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~  167 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSST
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeCCCh
Confidence            7776666677777778888888888777777777777778888887777765422111 0123445555555554 3344


Q ss_pred             CCCCCcccccccCCCCCCCc
Q 045837          356 QKWATTCSPVVSNPVDCSKD  375 (527)
Q Consensus       356 ~~~~~~~~~~~~np~~C~~~  375 (527)
                      .........+..+.+.|...
T Consensus       168 ~l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         168 KVRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             TTTTSBGGGSCTTTCCCCCC
T ss_pred             hhcCCEeeecCHhhCcCCCC
Confidence            44444444566666777553

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=2.6e-16  Score=142.65  Aligned_cols=162  Identities=18%  Similarity=0.295  Sum_probs=123.1

Q ss_pred             CcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEE
Q 045837           98 NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYL  177 (527)
Q Consensus        98 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  177 (527)
                      .+.+++.|+++++.+...  +.+..+++|++|++++|+|++..  .|.++.+|++|++++|.+... . .+.++.+|++|
T Consensus        38 ~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L  111 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI-T-PLANLTNLTGL  111 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEE
T ss_pred             HhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCcccccccccccccccc-c-ccccccccccc
Confidence            356789999999999864  46888999999999999998754  389999999999999998743 2 47889999999


Q ss_pred             ecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCC
Q 045837          178 DLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC  257 (527)
Q Consensus       178 ~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  257 (527)
                      ++++|.+.. +.. +.                      ...+|++|++++|++...  ..+..+.+|++|++++|++++ 
T Consensus       112 ~l~~~~~~~-~~~-~~----------------------~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~-  164 (199)
T d2omxa2         112 TLFNNQITD-IDP-LK----------------------NLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTD-  164 (199)
T ss_dssp             ECCSSCCCC-CGG-GT----------------------TCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-
T ss_pred             ccccccccc-ccc-cc----------------------hhhhhHHhhhhhhhhccc--ccccccccccccccccccccC-
Confidence            999998863 221 11                      123466777777766532  246777888888888888874 


Q ss_pred             ChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEE
Q 045837          258 LPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRL  295 (527)
Q Consensus       258 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  295 (527)
                      +. .++++++|++|+|++|++++ + ..++++++|++|
T Consensus       165 l~-~l~~l~~L~~L~ls~N~i~~-i-~~l~~L~~L~~L  199 (199)
T d2omxa2         165 LK-PLANLTTLERLDISSNKVSD-I-SVLAKLTNLESL  199 (199)
T ss_dssp             CG-GGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEE
T ss_pred             Cc-cccCCCCCCEEECCCCCCCC-C-ccccCCCCCCcC
Confidence            33 47788888888888888874 3 356777777765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.60  E-value=1.4e-16  Score=157.27  Aligned_cols=244  Identities=14%  Similarity=0.167  Sum_probs=121.9

Q ss_pred             cceEEEEEcCCCCcCCC----CccccCCCCCCCEEEccCCccccc----------ccccccCCCCCcEEEeecCcCccc-
Q 045837           99 ITVVAGIDLNGNDIAGY----FPAELGWLSDLALFHVNSNRFCGI----------IPESLSNWKLIYEFDVSNNRLVGS-  163 (527)
Q Consensus        99 ~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~----------~~~~~~~l~~L~~L~Ls~n~l~~~-  163 (527)
                      ...|+.|+|++|.+...    +-..+...++|+.|+++++.+...          +...+..+.+|++|+|++|.+... 
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            45677888888877442    223456678888888877644311          223455667788888888877643 


Q ss_pred             ---CCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccC----CC
Q 045837          164 ---FPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCV----PR  236 (527)
Q Consensus       164 ---~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~----~~  236 (527)
                         +...+..+.+|++|++++|.++......+ ...+..+.+...        ......|+.|++++|++....    ..
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l-~~~l~~~~~~~~--------~~~~~~L~~l~l~~n~i~~~~~~~l~~  180 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI-ARALQELAVNKK--------AKNAPPLRSIICGRNRLENGSMKEWAK  180 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHH-HHHHHHHHHHHH--------HHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             ccchhhhhcccccchheecccccccccccccc-cccccccccccc--------cccCcccceeecccccccccccccccc
Confidence               22334456778888888887642111111 011111111000        001223555555555544221    11


Q ss_pred             CCCCCCCCcEEEcccCCCCCC-----ChhhccCCCCCCEEEccCCccccc----CCcccCCCCCCcEEeccCCCCCCcc-
Q 045837          237 SIGNMPNVNEIILSNNDLMGC-----LPSEIGWLKKLTVFDASSNSFYGS----VPQSFSSLESIHRLVLSYNQLTGYV-  306 (527)
Q Consensus       237 ~l~~l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~-  306 (527)
                      .+.....|++|+|++|.+...     +...+..+++|++|+|++|.++..    +...+..+.+|++|+|++|.|++.. 
T Consensus       181 ~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~  260 (344)
T d2ca6a1         181 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  260 (344)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             hhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhh
Confidence            223345566666666655421     122344455566666666655421    2223445556666666666665431 


Q ss_pred             ---hhhhhC--CCCCcEEEecCcccCCCC----CCCCC-CCCCCceecCCCCCCC
Q 045837          307 ---SEQICK--LPNINNFTFSYNYFQGLG----NECIP-GSKEGGVFDDTSNCLA  351 (527)
Q Consensus       307 ---~~~l~~--l~~L~~L~Ls~N~l~~~~----~~~~~-~l~~L~~L~l~~N~l~  351 (527)
                         .+.+..  ...|++|++++|+++...    ..++. ++.+|+.|++++|.+.
T Consensus       261 ~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         261 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence               122222  234666666666554321    11111 3345666666666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.59  E-value=6.6e-17  Score=159.70  Aligned_cols=226  Identities=15%  Similarity=0.131  Sum_probs=148.5

Q ss_pred             ccccCCCCCCCEEEccCCccccc----ccccccCCCCCcEEEeecCcCccc----------CCcccccCCcccEEecccC
Q 045837          117 PAELGWLSDLALFHVNSNRFCGI----IPESLSNWKLIYEFDVSNNRLVGS----------FPNVCLSWTSLRYLDLRYN  182 (527)
Q Consensus       117 ~~~l~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----------~~~~~~~l~~L~~L~Ls~n  182 (527)
                      ...+.+...|++|+|++|.|...    +...+..+.+|++|+++++.+...          +...+..+.+|++|+|++|
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence            34566788999999999988642    344567788999999988765311          1223455678999999999


Q ss_pred             CCCCCcchhhhc-----cccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCC
Q 045837          183 NFEGEVPRELFK-----MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC  257 (527)
Q Consensus       183 ~i~~~~p~~~~~-----~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  257 (527)
                      .++......+..     .+|++|++++|.+.......+.. .+..+.+.         ........|+.|++++|.+...
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~-~l~~~~~~---------~~~~~~~~L~~l~l~~n~i~~~  173 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR-ALQELAVN---------KKAKNAPPLRSIICGRNRLENG  173 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH-HHHHHHHH---------HHHHTCCCCCEEECCSSCCTGG
T ss_pred             ccccccccchhhhhcccccchheecccccccccccccccc-cccccccc---------cccccCcccceeeccccccccc
Confidence            887432222211     35566666555543211111100 01111100         0113456899999999998743


Q ss_pred             ----ChhhccCCCCCCEEEccCCccccc-----CCcccCCCCCCcEEeccCCCCCCc----chhhhhCCCCCcEEEecCc
Q 045837          258 ----LPSEIGWLKKLTVFDASSNSFYGS-----VPQSFSSLESIHRLVLSYNQLTGY----VSEQICKLPNINNFTFSYN  324 (527)
Q Consensus       258 ----~p~~~~~l~~L~~L~Ls~n~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N  324 (527)
                          +...+..+..|++|+|++|+++..     +...+..+.+|+.|+|++|.++..    +...+..+.+|++|+|++|
T Consensus       174 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         174 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  253 (344)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             ccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcC
Confidence                233456788999999999998632     234466788999999999998643    3456778999999999999


Q ss_pred             ccCCCCCCC----CC--CCCCCceecCCCCCCCC
Q 045837          325 YFQGLGNEC----IP--GSKEGGVFDDTSNCLAQ  352 (527)
Q Consensus       325 ~l~~~~~~~----~~--~l~~L~~L~l~~N~l~~  352 (527)
                      .|++.....    +.  ....|+.|++++|.|+.
T Consensus       254 ~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         254 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             ccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            987542221    22  23679999999999873

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.58  E-value=7.8e-14  Score=136.91  Aligned_cols=223  Identities=20%  Similarity=0.230  Sum_probs=132.3

Q ss_pred             cceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCC-CCCcEEEeecCcCcccCCcccccCCcccEE
Q 045837           99 ITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNW-KLIYEFDVSNNRLVGSFPNVCLSWTSLRYL  177 (527)
Q Consensus        99 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  177 (527)
                      ..+|++|+|++|+|+. +++.   +.+|++|++++|+++.+     ..+ ..|++|++++|.+. .++ .+..+.+|++|
T Consensus        57 ~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~l~~n~l~~l-----~~lp~~L~~L~L~~n~l~-~lp-~~~~l~~L~~L  125 (353)
T d1jl5a_          57 PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-----SDLPPLLEYLGVSNNQLE-KLP-ELQNSSFLKII  125 (353)
T ss_dssp             CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-----CSCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEE
T ss_pred             CCCCCEEECCCCCCcc-cccc---hhhhhhhhhhhcccchh-----hhhccccccccccccccc-ccc-chhhhccceee
Confidence            3568888888888874 4543   45788888888887732     223 35888888888887 344 35678888888


Q ss_pred             ecccCCCCCCcchhhh--------------------ccccchhhcccccccccc-------------------ccccCCC
Q 045837          178 DLRYNNFEGEVPRELF--------------------KMKLDAIFLNNNRFSSWI-------------------PETIGES  218 (527)
Q Consensus       178 ~Ls~n~i~~~~p~~~~--------------------~~~L~~L~L~~n~l~~~~-------------------~~~~~~~  218 (527)
                      ++++|.+... +....                    ...++.+.+.+|.+....                   .......
T Consensus       126 ~l~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~  204 (353)
T d1jl5a_         126 DVDNNSLKKL-PDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP  204 (353)
T ss_dssp             ECCSSCCSCC-CCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCT
T ss_pred             cccccccccc-ccccccccchhhccccccccccccccccceecccccccccccccccccccccccccccccccccccccc
Confidence            8888877522 11110                    023455555555443211                   1111123


Q ss_pred             CcceEeccCCcCCccCCCCCC-----------------CCCCCcEEEcccCCCCCC----------------ChhhccCC
Q 045837          219 TVSVVTFAHNNFSGCVPRSIG-----------------NMPNVNEIILSNNDLMGC----------------LPSEIGWL  265 (527)
Q Consensus       219 ~L~~L~L~~n~l~~~~~~~l~-----------------~l~~L~~L~Ls~N~l~~~----------------~p~~~~~l  265 (527)
                      .++.+++++|..... +....                 ....+..+++..+.+.+.                +......+
T Consensus       205 ~L~~l~l~~n~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  283 (353)
T d1jl5a_         205 FLTTIYADNNLLKTL-PDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLP  283 (353)
T ss_dssp             TCCEEECCSSCCSSC-CSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCC
T ss_pred             ccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccchhcccccccCccccccccC
Confidence            466677766655432 11110                 012233333333222210                00111234


Q ss_pred             CCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecC
Q 045837          266 KKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDD  345 (527)
Q Consensus       266 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  345 (527)
                      .+|++|+|++|+|+ .++..   +.+|++|+|++|+|+. +++   .+.+|++|++++|+|+.+ +...   ..|+.|.+
T Consensus       284 ~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~~-l~~---~~~~L~~L~L~~N~L~~l-p~~~---~~L~~L~~  351 (353)
T d1jl5a_         284 PSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREF-PDIP---ESVEDLRM  351 (353)
T ss_dssp             TTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC-CCCC---TTCCEEEC
T ss_pred             CCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCCc-ccc---ccCCCCEEECcCCcCCCC-Cccc---cccCeeEC
Confidence            68999999999998 55543   5789999999999985 443   346899999999999865 3322   34566655


Q ss_pred             C
Q 045837          346 T  346 (527)
Q Consensus       346 ~  346 (527)
                      .
T Consensus       352 ~  352 (353)
T d1jl5a_         352 N  352 (353)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.6e-15  Score=143.85  Aligned_cols=214  Identities=15%  Similarity=0.123  Sum_probs=113.5

Q ss_pred             cceEEEEEcCCCCcCCC-CccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecC-cCccc-CCcccccCCccc
Q 045837           99 ITVVAGIDLNGNDIAGY-FPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNN-RLVGS-FPNVCLSWTSLR  175 (527)
Q Consensus        99 ~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~  175 (527)
                      ..+|++|||+++.+.+. +...+.++++|++|+|++|.+.+.....+..+++|++|+|+++ .+++. +...+.++++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            34566666666655432 2233456666666666666665555555666666666666663 34321 111123456666


Q ss_pred             EEecccCC-CCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCc--CCcc-CCCCCCCCCCCcEEEccc
Q 045837          176 YLDLRYNN-FEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNN--FSGC-VPRSIGNMPNVNEIILSN  251 (527)
Q Consensus       176 ~L~Ls~n~-i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~--l~~~-~~~~l~~l~~L~~L~Ls~  251 (527)
                      +|+++++. ++...-.....                    .....|++|+++++.  +++. +...+.++++|++|++++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~--------------------~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~  184 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVA--------------------HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD  184 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHH--------------------HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred             ccccccccccccccchhhhc--------------------ccccccchhhhccccccccccccccccccccccccccccc
Confidence            66666542 22100000000                    011245666665432  2221 111234567788888877


Q ss_pred             C-CCCCCChhhccCCCCCCEEEccCC-cccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCC
Q 045837          252 N-DLMGCLPSEIGWLKKLTVFDASSN-SFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGL  329 (527)
Q Consensus       252 N-~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  329 (527)
                      | .+++.....+.++++|++|+|++| .+++.....++++++|++|+++++--.+.+......+++|+   +..+.+++.
T Consensus       185 ~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~~  261 (284)
T d2astb2         185 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTI  261 (284)
T ss_dssp             CTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSCCT
T ss_pred             ccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCCCC
Confidence            5 466555566777788888888885 56655445567778888888887722222223334455543   566666665


Q ss_pred             CCCCCC
Q 045837          330 GNECIP  335 (527)
Q Consensus       330 ~~~~~~  335 (527)
                      ....+.
T Consensus       262 ~~~~~~  267 (284)
T d2astb2         262 ARPTIG  267 (284)
T ss_dssp             TCSSCS
T ss_pred             CCCccC
Confidence            444333

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=8.1e-17  Score=164.44  Aligned_cols=88  Identities=17%  Similarity=0.194  Sum_probs=62.7

Q ss_pred             CcceEEEEEcCCCCcCCC----CccccCCCCCCCEEEccCCccccc----cccccc-CCCCCcEEEeecCcCccc----C
Q 045837           98 NITVVAGIDLNGNDIAGY----FPAELGWLSDLALFHVNSNRFCGI----IPESLS-NWKLIYEFDVSNNRLVGS----F  164 (527)
Q Consensus        98 ~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~----~~~~~~-~l~~L~~L~Ls~n~l~~~----~  164 (527)
                      .++++++|+|++|+++..    +...+..+++|++|+|++|+|+..    +.+.+. ...+|++|+|++|++++.    +
T Consensus        25 ~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l  104 (460)
T d1z7xw1          25 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL  104 (460)
T ss_dssp             HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             hCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccc
Confidence            456788899999987632    234567888999999999988632    222222 234799999999988743    3


Q ss_pred             CcccccCCcccEEecccCCCC
Q 045837          165 PNVCLSWTSLRYLDLRYNNFE  185 (527)
Q Consensus       165 ~~~~~~l~~L~~L~Ls~n~i~  185 (527)
                      ...+..+.+|++|+|++|.++
T Consensus       105 ~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         105 SSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHHTTSCTTCCEEECCSSBCH
T ss_pred             cchhhccccccccccccccch
Confidence            345667888999999998765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.4e-16  Score=160.82  Aligned_cols=65  Identities=15%  Similarity=0.214  Sum_probs=48.9

Q ss_pred             CCcceEEEEEcCCCCcCCC----CccccC-CCCCCCEEEccCCccccc----ccccccCCCCCcEEEeecCcCc
Q 045837           97 SNITVVAGIDLNGNDIAGY----FPAELG-WLSDLALFHVNSNRFCGI----IPESLSNWKLIYEFDVSNNRLV  161 (527)
Q Consensus        97 ~~~~~L~~L~L~~n~l~~~----~~~~l~-~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~  161 (527)
                      ..+++|+.|+|++|.++..    +...+. ...+|++|+|++|.|+..    +...+..+.+|++|+|++|.+.
T Consensus        52 ~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          52 RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             hcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            3567899999999998542    122222 235799999999999754    3456788999999999999874

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=3.4e-14  Score=117.85  Aligned_cols=104  Identities=23%  Similarity=0.319  Sum_probs=78.3

Q ss_pred             ceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCC
Q 045837          221 SVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYN  300 (527)
Q Consensus       221 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  300 (527)
                      +.|+|++|+++.. . .+.++.+|++|++++|.|+ .++..++.+.+|++|++++|+|++ ++ .+..+.+|++|++++|
T Consensus         1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            4677888887743 2 4777888888888888887 566678888888888888888874 33 5778888888888888


Q ss_pred             CCCCcc-hhhhhCCCCCcEEEecCcccCCC
Q 045837          301 QLTGYV-SEQICKLPNINNFTFSYNYFQGL  329 (527)
Q Consensus       301 ~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~  329 (527)
                      +|++.. ...+..+++|++|++++|.+++.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            887653 25677788888888888887653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=3.9e-14  Score=117.49  Aligned_cols=105  Identities=21%  Similarity=0.288  Sum_probs=92.5

Q ss_pred             cEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCc
Q 045837          245 NEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYN  324 (527)
Q Consensus       245 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N  324 (527)
                      ++|+|++|+++ .++ .+..+.+|++||+++|+|+ .++..|..+.+|+.|++++|+|++.  ..+.++++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc--CccccccccCeEECCCC
Confidence            58999999998 555 4889999999999999998 6777899999999999999999975  35899999999999999


Q ss_pred             ccCCCCC-CCCCCCCCCceecCCCCCCCCCC
Q 045837          325 YFQGLGN-ECIPGSKEGGVFDDTSNCLAQRP  354 (527)
Q Consensus       325 ~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~  354 (527)
                      ++++... ..+..+++|+.|++++|.|+...
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            9997653 45788899999999999998654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.4e-14  Score=126.37  Aligned_cols=126  Identities=13%  Similarity=0.110  Sum_probs=93.0

Q ss_pred             CCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEe
Q 045837          217 ESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLV  296 (527)
Q Consensus       217 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  296 (527)
                      ..++++|+|++|+|... ...+..+.+|++|+|++|.|+ .+ ..|..+.+|++|+|++|+++......+..+.+|++|+
T Consensus        17 ~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCC-cc-CCcccCcchhhhhcccccccCCCccccccccccccce
Confidence            34678888888888754 455567888888888888887 33 3577888888888888888855555566788888888


Q ss_pred             ccCCCCCCcch-hhhhCCCCCcEEEecCcccCCCCC---CCCCCCCCCceecC
Q 045837          297 LSYNQLTGYVS-EQICKLPNINNFTFSYNYFQGLGN---ECIPGSKEGGVFDD  345 (527)
Q Consensus       297 Ls~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~l  345 (527)
                      |++|+|+.... ..+.++++|++|++++|.++....   ..+..+++|++||.
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             eccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            88888876432 467788888888888888866532   23556677877763

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6.1e-14  Score=122.15  Aligned_cols=116  Identities=16%  Similarity=0.182  Sum_probs=99.5

Q ss_pred             CCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCC
Q 045837          237 SIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNI  316 (527)
Q Consensus       237 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  316 (527)
                      .+.+..+|++|+|++|+|+ .++..+..+.+|++|||++|+|+. + +.|..+.+|++|+|++|+|+++....+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            3567778999999999999 556666789999999999999984 4 468899999999999999998766677889999


Q ss_pred             cEEEecCcccCCCCC-CCCCCCCCCceecCCCCCCCCCCC
Q 045837          317 NNFTFSYNYFQGLGN-ECIPGSKEGGVFDDTSNCLAQRPS  355 (527)
Q Consensus       317 ~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~  355 (527)
                      ++|++++|++++... ..+..+++|+.|++++|.++..+.
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~  129 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH  129 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccccccc
Confidence            999999999987643 467889999999999999987653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.5e-14  Score=138.50  Aligned_cols=192  Identities=13%  Similarity=0.123  Sum_probs=121.7

Q ss_pred             CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCC-ccccc-ccccccCCCCCcEEEeecC-cCccc-CCccccc-
Q 045837           96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSN-RFCGI-IPESLSNWKLIYEFDVSNN-RLVGS-FPNVCLS-  170 (527)
Q Consensus        96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~-  170 (527)
                      +..+.+|++|+|+++.+.+.....+..+++|++|+|+++ .++.. +...+.++++|++|+|+++ .+++. +...+.. 
T Consensus        67 ~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~  146 (284)
T d2astb2          67 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  146 (284)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccc
Confidence            456789999999999988776778889999999999996 56532 2223467899999999986 44421 1112222 


Q ss_pred             CCcccEEecccCC--CCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCC-cCCccCCCCCCCCCCCcEE
Q 045837          171 WTSLRYLDLRYNN--FEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHN-NFSGCVPRSIGNMPNVNEI  247 (527)
Q Consensus       171 l~~L~~L~Ls~n~--i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L  247 (527)
                      ..+|+.|+++++.  ++...-..+..                     ...+|++|++++| .+++.....+.++++|++|
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~---------------------~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVR---------------------RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHH---------------------HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             ccccchhhhccccccccccccccccc---------------------ccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            4689999998653  32111111110                     1235667777664 3555555567778889999


Q ss_pred             EcccC-CCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhh
Q 045837          248 ILSNN-DLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQIC  311 (527)
Q Consensus       248 ~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~  311 (527)
                      +|++| .+++.....++++++|++|+++++.-.+.+......+++   |++..+.+++.....++
T Consensus       206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~---L~i~~~~ls~~~~~~~~  267 (284)
T d2astb2         206 SLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHFTTIARPTIG  267 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTT---SEESCCCSCCTTCSSCS
T ss_pred             ECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcc---ccccCccCCCCCCCccC
Confidence            99885 566555556788889999999887222222212223344   44566677655444333

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=7.1e-12  Score=108.04  Aligned_cols=106  Identities=11%  Similarity=0.109  Sum_probs=57.4

Q ss_pred             CcEEEcccCCCCCCChhhccCCCCCCEEEccCC-cccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEec
Q 045837          244 VNEIILSNNDLMGCLPSEIGWLKKLTVFDASSN-SFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFS  322 (527)
Q Consensus       244 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls  322 (527)
                      .++++++++.+. ..+..+..+++|++|+|++| .++..-...|.++.+|+.|+|++|+|+.+.+..|.++++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            344555555554 33444555555566665544 2544434455555666666666666655555555666666666666


Q ss_pred             CcccCCCCCCCCCCCCCCceecCCCCCCC
Q 045837          323 YNYFQGLGNECIPGSKEGGVFDDTSNCLA  351 (527)
Q Consensus       323 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  351 (527)
                      +|+|+.+....|..+ .|+.|+|++|.|.
T Consensus        89 ~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             CCCCcccChhhhccc-cccccccCCCccc
Confidence            666655544444333 4566666666553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.25  E-value=4.4e-14  Score=127.41  Aligned_cols=111  Identities=20%  Similarity=0.215  Sum_probs=57.6

Q ss_pred             ccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcc
Q 045837          142 ESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVS  221 (527)
Q Consensus       142 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~  221 (527)
                      ..|..+.+|++|+|++|+|+..  ..+.++.+|++|+|++|.|+ .++......                      .+|+
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~----------------------~~L~   96 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KIENLDAVA----------------------DTLE   96 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEEC-SCSSHHHHH----------------------HHCC
T ss_pred             hHHhcccccceeECcccCCCCc--ccccCCccccChhhcccccc-ccccccccc----------------------cccc
Confidence            3455556666666666666532  23555666666666666655 332211110                      0133


Q ss_pred             eEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCCh-hhccCCCCCCEEEccCCccc
Q 045837          222 VVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLP-SEIGWLKKLTVFDASSNSFY  279 (527)
Q Consensus       222 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~n~l~  279 (527)
                      +|++++|+++..  ..+..+.+|++|+|++|.|++... ..+..+.+|++|+|++|.+.
T Consensus        97 ~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_          97 ELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            333333333321  124455667777777777763211 34666677777777777665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.1e-11  Score=106.90  Aligned_cols=104  Identities=16%  Similarity=0.203  Sum_probs=58.6

Q ss_pred             eEeccCCcCCccCCCCCCCCCCCcEEEcccC-CCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCC
Q 045837          222 VVTFAHNNFSGCVPRSIGNMPNVNEIILSNN-DLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYN  300 (527)
Q Consensus       222 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  300 (527)
                      .++++++++.. .+..+..+.+|++|++++| .++..-...|.++.+|++|+|++|+|+++.+..|.++.+|++|+|++|
T Consensus        12 ~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecCCCCcc-CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            34444444442 3344555566666666544 355444455666666666666666666555555666666666666666


Q ss_pred             CCCCcchhhhhCCCCCcEEEecCcccC
Q 045837          301 QLTGYVSEQICKLPNINNFTFSYNYFQ  327 (527)
Q Consensus       301 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~  327 (527)
                      +|+.+....+..+ +|++|+|++|.|.
T Consensus        91 ~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          91 ALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             CCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             CCcccChhhhccc-cccccccCCCccc
Confidence            6664444444333 4666666666654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.21  E-value=7.1e-14  Score=126.00  Aligned_cols=122  Identities=16%  Similarity=0.159  Sum_probs=84.1

Q ss_pred             CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEec
Q 045837          218 STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVL  297 (527)
Q Consensus       218 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  297 (527)
                      .+|++|+|++|+|...  ..|.++.+|++|+|++|.|+ .++..+..+.+|++|++++|+++..  ..+..+.+|+.|+|
T Consensus        48 ~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L  122 (198)
T d1m9la_          48 KACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYM  122 (198)
T ss_dssp             TTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHSSEEEE
T ss_pred             cccceeECcccCCCCc--ccccCCccccChhhcccccc-ccccccccccccccccccccccccc--cccccccccccccc
Confidence            3577777777777643  35777788888888888877 4454444556788888888888743  34666778888888


Q ss_pred             cCCCCCCcch-hhhhCCCCCcEEEecCcccCCCCCCC----------CCCCCCCceec
Q 045837          298 SYNQLTGYVS-EQICKLPNINNFTFSYNYFQGLGNEC----------IPGSKEGGVFD  344 (527)
Q Consensus       298 s~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~----------~~~l~~L~~L~  344 (527)
                      ++|+|+.... ..+..+++|++|+|++|.+.......          +..+++|+.||
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            8888876432 46778888888888888775433221          34566777765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2.8e-09  Score=92.00  Aligned_cols=83  Identities=14%  Similarity=0.035  Sum_probs=43.9

Q ss_pred             ccCCCCCCEEEccCCccccc--CCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCC-------
Q 045837          262 IGWLKKLTVFDASSNSFYGS--VPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNE-------  332 (527)
Q Consensus       262 ~~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~-------  332 (527)
                      +..+.+|++|+|++|+|+..  +...+..+++|+.|+|++|.|+....-...+..+|++|++++|.+.+....       
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            34456666666666666532  122344556666666666666654332333334566666666666543321       


Q ss_pred             CCCCCCCCceec
Q 045837          333 CIPGSKEGGVFD  344 (527)
Q Consensus       333 ~~~~l~~L~~L~  344 (527)
                      .+..+++|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            134455565554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.5e-08  Score=87.32  Aligned_cols=86  Identities=19%  Similarity=0.185  Sum_probs=61.1

Q ss_pred             CCCCCCcEEEcccCCCCCC--ChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcch-------hh
Q 045837          239 GNMPNVNEIILSNNDLMGC--LPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVS-------EQ  309 (527)
Q Consensus       239 ~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-------~~  309 (527)
                      ..+.+|++|+|++|+|+..  +...+..+++|+.|||++|.|+..-.-.+.+..+|+.|+|++|.+.+...       ..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            4567888899999988743  23446678899999999999874333233344578999999998876432       34


Q ss_pred             hhCCCCCcEEEecCccc
Q 045837          310 ICKLPNINNFTFSYNYF  326 (527)
Q Consensus       310 l~~l~~L~~L~Ls~N~l  326 (527)
                      +..+++|++||  ++.+
T Consensus       142 ~~~~P~L~~LD--g~~v  156 (162)
T d1koha1         142 RERFPKLLRLD--GHEL  156 (162)
T ss_dssp             HTTSTTCCEET--TEEC
T ss_pred             HHHCCCCCEEC--cCCC
Confidence            66788998876  5554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.08  E-value=1.2e-06  Score=75.40  Aligned_cols=108  Identities=15%  Similarity=0.094  Sum_probs=61.5

Q ss_pred             CCcceEeccCC-cCCcc----CCCCCCCCCCCcEEEcccCCCCC----CChhhccCCCCCCEEEccCCccccc----CCc
Q 045837          218 STVSVVTFAHN-NFSGC----VPRSIGNMPNVNEIILSNNDLMG----CLPSEIGWLKKLTVFDASSNSFYGS----VPQ  284 (527)
Q Consensus       218 ~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~  284 (527)
                      .+|++|+|+++ .+...    +...+.....|++|+|++|.+..    .+...+...+.|++|+|++|.++..    +-.
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            34666666653 34321    22234455667777777777652    2233445566777777777776532    123


Q ss_pred             ccCCCCCCcEEeccCCCCCCc-------chhhhhCCCCCcEEEecCcc
Q 045837          285 SFSSLESIHRLVLSYNQLTGY-------VSEQICKLPNINNFTFSYNY  325 (527)
Q Consensus       285 ~~~~l~~L~~L~Ls~N~l~~~-------~~~~l~~l~~L~~L~Ls~N~  325 (527)
                      .+....+|++|+|++|.+...       +.+.+....+|++|+++++.
T Consensus        95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            355566777777777755432       33445556677777776554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.07  E-value=5.4e-07  Score=77.59  Aligned_cols=112  Identities=14%  Similarity=0.062  Sum_probs=81.7

Q ss_pred             CCCCCCcEEEcccC-CCCCC----ChhhccCCCCCCEEEccCCccccc----CCcccCCCCCCcEEeccCCCCCCc----
Q 045837          239 GNMPNVNEIILSNN-DLMGC----LPSEIGWLKKLTVFDASSNSFYGS----VPQSFSSLESIHRLVLSYNQLTGY----  305 (527)
Q Consensus       239 ~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----  305 (527)
                      .+.++|++|+|+++ .++..    +-..+....+|++|+|++|.+...    +.+.+.....|++|+|++|.|+..    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34578999999975 46532    344567788999999999998732    223445668999999999999864    


Q ss_pred             chhhhhCCCCCcEEEecCcccCCCC-------CCCCCCCCCCceecCCCCCC
Q 045837          306 VSEQICKLPNINNFTFSYNYFQGLG-------NECIPGSKEGGVFDDTSNCL  350 (527)
Q Consensus       306 ~~~~l~~l~~L~~L~Ls~N~l~~~~-------~~~~~~l~~L~~L~l~~N~l  350 (527)
                      +...+....+|++|++++|++..+.       ...+.....|+.|+++++..
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            3445777889999999999776542       22344567888998877653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.54  E-value=1e-05  Score=69.21  Aligned_cols=109  Identities=14%  Similarity=0.163  Sum_probs=65.0

Q ss_pred             CCcceEeccC-CcCCcc----CCCCCCCCCCCcEEEcccCCCCCC----ChhhccCCCCCCEEEccCCccccc----CCc
Q 045837          218 STVSVVTFAH-NNFSGC----VPRSIGNMPNVNEIILSNNDLMGC----LPSEIGWLKKLTVFDASSNSFYGS----VPQ  284 (527)
Q Consensus       218 ~~L~~L~L~~-n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~  284 (527)
                      .+|++|+|++ +.++..    +...+....+|++|+|++|.++..    +...+....+|+.|++++|.+...    +-.
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            4566666665 344431    223345667788888888877633    233445567788888888777532    223


Q ss_pred             ccCCCCCCcEEec--cCCCCCCc----chhhhhCCCCCcEEEecCccc
Q 045837          285 SFSSLESIHRLVL--SYNQLTGY----VSEQICKLPNINNFTFSYNYF  326 (527)
Q Consensus       285 ~~~~l~~L~~L~L--s~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l  326 (527)
                      .+....+|+.++|  ++|.+...    +.+.+...++|++|+++.+..
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            4556677776544  45566542    344556677778877766543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.35  E-value=1.2e-05  Score=68.65  Aligned_cols=112  Identities=11%  Similarity=0.063  Sum_probs=79.7

Q ss_pred             CCCCCCcEEEccc-CCCCCC----ChhhccCCCCCCEEEccCCcccccC----CcccCCCCCCcEEeccCCCCCCc----
Q 045837          239 GNMPNVNEIILSN-NDLMGC----LPSEIGWLKKLTVFDASSNSFYGSV----PQSFSSLESIHRLVLSYNQLTGY----  305 (527)
Q Consensus       239 ~~l~~L~~L~Ls~-N~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~----  305 (527)
                      .+.++|++|+|++ +.++..    +-..+....+|++|+|++|.++...    ...+....+++.|++++|.++..    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4567899999998 456532    3345667899999999999986432    23455678999999999999754    


Q ss_pred             chhhhhCCCCCcEEEe--cCcccCCC----CCCCCCCCCCCceecCCCCCC
Q 045837          306 VSEQICKLPNINNFTF--SYNYFQGL----GNECIPGSKEGGVFDDTSNCL  350 (527)
Q Consensus       306 ~~~~l~~l~~L~~L~L--s~N~l~~~----~~~~~~~l~~L~~L~l~~N~l  350 (527)
                      +...+....+|+.++|  ++|.+...    +...+.....|+.|+++++..
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            3456677888987665  46666542    222345678899999987654