Citrus Sinensis ID: 045865

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
GEGATDCCQWERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRILHQG
Secondary Structure (PSIPRED)
ccccccccccccEEEccccccEEEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHcccccccEEEccccccccccHHHHHcccccccEEEccccccccccccccccccccccEEEccccccccccccHHHHHcccccccEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEccccccEEEEEEEEcccccccccccHHHHcccccccEEEcccccccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcccccccEEEcccccccccccHHHHHHHHcccEEEcccccccccccHHHHHccccccEEEcccccccccccccHHHHccccccEEEEcccccccccccHHcccc
Coil and Loop (DISEMBL)
gegatdccqwervecsntTGRVIALDLSYIYSGEYswylnaslftpfqqlesldltqnkiagcvenegiERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLegsidvkelhnftnleyltLESSSLHISLLQSIASIFPslknlsmsfcevngvvrgqgfphfksleHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYStlgtnssrilhqg
Flexible Loop (DISEMBL)
gegatdccqwervecsnttgrVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSystlgtnssrilhqg
Low Complexity Region (SEG)
GEGATDCCQWERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFnnsilsslthlsslrslnllwnrlEGSIDVKELHNFTNLEYltlessslhisllqsiasiFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPslkylllsystlgtnssRILHQG
Disordered region (IsUnstruct)
*****DCCQWERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLG**********
Disordered Region (DISOPRED)
GEGATDCCQWERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRILHQ*
Disordered Region (DISEMBL)
GEGATDCCQWERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRILHQG
Disordered Region (DISPRO)
****TDCCQWERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRI****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GEGATDCCQWERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRILHQG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.653	0.173	0.354	9e-10
Q05091	330	Polygalacturonase inhibit	N/A	no	0.613	0.418	0.305	2e-07
C0LGQ9	1037	Probable LRR receptor-lik	no	no	0.573	0.124	0.296	9e-07
P47735	999	Receptor-like protein kin	no	no	0.773	0.174	0.278	1e-06
Q9ZVR7	1008	Phytosulfokine receptor 1	no	no	0.533	0.119	0.330	1e-06
Q9LRT1	1016	Probably inactive leucine	no	no	0.56	0.124	0.313	2e-06
Q6XAT2	967	LRR receptor-like serine/	no	no	0.76	0.176	0.267	2e-06
C0LGW6	966	LRR receptor-like serine/	no	no	0.546	0.127	0.320	3e-06
Q0WR59	1048	Probable inactive recepto	no	no	0.848	0.182	0.286	3e-06
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.533	0.117	0.302	8e-06

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 63.9 bits (154), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 82/155 (52%), Gaps = 8/155 (5%)

Query: 4   ATDCCQWERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGC 63
           +TDCC W  V C++ +G+VI+LD+   +   Y    N+SLF   Q L  LDLT   + G 
Sbjct: 68  STDCCLWNGVTCNDKSGQVISLDIPNTFLNNY-LKTNSSLFK-LQYLRHLDLTNCNLYGE 125

Query: 64  VENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHN 123
           + +     L  L++L ++NL  N F   I +S+ +L+ LR L L  N L G I    L N
Sbjct: 126 IPSS----LGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIP-SSLGN 180

Query: 124 FTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMS 158
            + L  L L S+ L   +  SI  +   L+NLS++
Sbjct: 181 LSRLVNLELFSNRLVGKIPDSIGDL-KQLRNLSLA 214

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q05091|PGIP_PYRCO Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 29/167 (17%)

Query: 5   TDCCQWERVECSNTTGRVIAL----------------DLSYIYSGEYSWYLNASLFTPFQ 48
           TDCC W  V C +TT R+ +L                DL Y+ + E+  +   +L  P Q
Sbjct: 55  TDCCDWYCVTCDSTTNRINSLTIFAGQVSGQIPALVGDLPYLETLEF--HKQPNLTGPIQ 112

Query: 49  Q-------LESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 101
                   L+SL L+   ++G V     + LS+L NL  L+LS N+   +I SSL+ L +
Sbjct: 113 PAIAKLKGLKSLRLSWTNLSGSVP----DFLSQLKNLTFLDLSFNNLTGAIPSSLSELPN 168

Query: 102 LRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASI 148
           L +L L  N+L G I +       N+  L L  + L  ++  S A +
Sbjct: 169 LGALRLDRNKLTGHIPISFGQFIGNVPDLYLSHNQLSGNIPTSFAQM 215

Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi.

Pyrus communis (taxid: 23211)

>sp|C0LGQ9|Y4294_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 75/135 (55%), Gaps = 6/135 (4%)

Query: 50  LESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLW 109
           L+SLD++ N ++G +     + L+RLN+L  LNLS N F   +      +SSL  L+L  
Sbjct: 152 LQSLDMSSNSLSGPLP----KSLTRLNDLLYLNLSSNGFTGKMPRGFELISSLEVLDLHG 207

Query: 110 NRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQ 169
           N ++G++D  E    TN  Y+ +  + L  +  + +  +  S+K+L++S  ++ G +   
Sbjct: 208 NSIDGNLD-GEFFLLTNASYVDISGNRLVTTSGKLLPGVSESIKHLNLSHNQLEGSLT-S 265

Query: 170 GFPHFKSLEHFDMRF 184
           GF  F++L+  D+ +
Sbjct: 266 GFQLFQNLKVLDLSY 280

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P47735|RLK5_ARATH Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 87/201 (43%), Gaps = 27/201 (13%)

Query: 8   CQWERVECSNTTGRVIALDLSY---------------------IYSGEYSWYLNASLFTP 46
           C+W  V C + T  V+++DLS                      +Y+   +  L+A  F  
Sbjct: 54  CKWLGVSC-DATSNVVSVDLSSFMLVGPFPSILCHLPSLHSLSLYNNSINGSLSADDFDT 112

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
              L SLDL++N + G +          L NLK L +SGN+ +++I SS      L SLN
Sbjct: 113 CHNLISLDLSENLLVGSIPKS---LPFNLPNLKFLEISGNNLSDTIPSSFGEFRKLESLN 169

Query: 107 LLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVV 166
           L  N L G+I    L N T L+ L L  +    S + S       L+ L ++ C + G +
Sbjct: 170 LAGNFLSGTIPA-SLGNVTTLKELKLAYNLFSPSQIPSQLGNLTELQVLWLAGCNLVGPI 228

Query: 167 RGQGFPHFKSLEHFDMRFARI 187
                    SL + D+ F ++
Sbjct: 229 P-PSLSRLTSLVNLDLTFNQL 248

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates that controls floral organ abscission. May interact with the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) ligands family.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZVR7|PSKR1_ARATH Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 69/130 (53%), Gaps = 10/130 (7%)

Query: 4   ATDCCQWERVEC-SNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAG 62
           +TDCC W  + C SN TGRVI L+L    + + S  L+ SL     ++  L+L++N I  
Sbjct: 59  STDCCNWTGITCNSNNTGRVIRLELG---NKKLSGKLSESL-GKLDEIRVLNLSRNFIKD 114

Query: 63  CVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELH 122
            +       +  L NL+ L+LS N  +  I +S+ +L +L+S +L  N+  GS+     H
Sbjct: 115 SIP----LSIFNLKNLQTLDLSSNDLSGGIPTSI-NLPALQSFDLSSNKFNGSLPSHICH 169

Query: 123 NFTNLEYLTL 132
           N T +  + L
Sbjct: 170 NSTQIRVVKL 179

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Not involved in PSY perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 11/137 (8%)

Query: 2   EGATDCCQWERVECSNTTGRVIALDLSYI-YSGEYSWYLNASLFTPFQQLESLDLTQNKI 60
           E     C W  V+C+  T RVI L L  +  +G+ +  +        Q+L+ L L+ N  
Sbjct: 59  EDDNTPCSWSYVKCNPKTSRVIELSLDGLALTGKINRGIQK-----LQRLKVLSLSNNNF 113

Query: 61  AGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKE 120
            G      I  LS  N+L+ L+LS N+ +  I SSL  ++SL+ L+L  N   G++    
Sbjct: 114 TG-----NINALSNNNHLQKLDLSHNNLSGQIPSSLGSITSLQHLDLTGNSFSGTLSDDL 168

Query: 121 LHNFTNLEYLTLESSSL 137
            +N ++L YL+L  + L
Sbjct: 169 FNNCSSLRYLSLSHNHL 185

Arabidopsis thaliana (taxid: 3702)

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 95/228 (41%), Gaps = 57/228 (25%)

Query: 6   DCCQWERVECSNTTGRVIALDLSYI-YSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCV 64
           D C W  V C N +  V++L+LS +   GE S     S       L+S+DL  NK+ G +
Sbjct: 59  DFCSWRGVFCDNVSLNVVSLNLSNLNLGGEIS-----SALGDLMNLQSIDLQGNKLGGQI 113

Query: 65  ENE-------------------GIE-RLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRS 104
            +E                    I   +S+L  L+ LNL  N     I ++LT + +L++
Sbjct: 114 PDEIGNCVSLAYVDFSTNLLFGDIPFSISKLKQLEFLNLKNNQLTGPIPATLTQIPNLKT 173

Query: 105 LNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNG 164
           L+L  N+L G I  + L+    L+YL L  + L                 LS   C++ G
Sbjct: 174 LDLARNQLTGEIP-RLLYWNEVLQYLGLRGNMLT--------------GTLSPDMCQLTG 218

Query: 165 V----VRG--------QGFPHFKSLEHFDMRFAR----IALNTSFLQI 196
           +    VRG        +   +  S E  D+ + +    I  N  FLQ+
Sbjct: 219 LWYFDVRGNNLTGTIPESIGNCTSFEILDVSYNQITGVIPYNIGFLQV 266

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 11/134 (8%)

Query: 5   TDCCQWERVECSNTTGRVIALDLSYI-YSGEYSWYLNASLFTPFQQLESLDLTQNKIAGC 63
           +D C W  V C N +  V++L+LS +   GE S  +        + L+S+DL  NK+AG 
Sbjct: 56  SDLCSWRGVFCDNVSYSVVSLNLSSLNLGGEISPAIGD-----LRNLQSIDLQGNKLAGQ 110

Query: 64  VENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHN 123
           + +E    +    +L  L+LS N     I  S++ L  L +LNL  N+L G +    L  
Sbjct: 111 IPDE----IGNCASLVYLDLSENLLYGDIPFSISKLKQLETLNLKNNQLTGPVPAT-LTQ 165

Query: 124 FTNLEYLTLESSSL 137
             NL+ L L  + L
Sbjct: 166 IPNLKRLDLAGNHL 179

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q0WR59|Y5020_ARATH Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana GN=At5g10020 PE=1 SV=2

 Score = 52.0 bits (123), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 104/237 (43%), Gaps = 46/237 (19%)

Query: 9   QWERVECSNTTGRVIALDLSYI-YSGEYSWYLNASL----------------FTP----F 47
            W  + C   TG +IA++L     SGE  +   + L                  P     
Sbjct: 63  DWPGISCDPETGSIIAINLDRRGLSGELKFSTLSGLTRLRNLSLSGNSFSGRVVPSLGGI 122

Query: 48  QQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNL 107
             L+ LDL+ N   G +      R+S L +L  LNLS N F     S   +L  LRSL+L
Sbjct: 123 SSLQHLDLSDNGFYGPIPG----RISELWSLNHLNLSSNKFEGGFPSGFRNLQQLRSLDL 178

Query: 108 LWNRLEGSIDVKELHN-FTNLEYLTLESSSLHISL---LQSIASIFPSLKNLSMSFCEVN 163
             N + G  DV E+     N+E++ L  +  +  L   +++I+SI  +L++L++S   +N
Sbjct: 179 HKNEIWG--DVGEIFTELKNVEFVDLSCNRFNGGLSLPMENISSISNTLRHLNLSHNALN 236

Query: 164 G-VVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGE-----SMPSLKYLLLSYSTL 214
           G     +    FK+LE  D+            QI GE     S PSL+ L L+ + L
Sbjct: 237 GKFFSEESIGSFKNLEIVDLENN---------QINGELPHFGSQPSLRILKLARNEL 284

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score = 50.8 bits (120), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 19/139 (13%)

Query: 4   ATDCCQWERVECS----------NTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESL 53
           +++CC W  + C           N +GRV+ L+L      + S  L+ S+     QL+ L
Sbjct: 60  SSNCCDWVGISCKSSVSLGLDDVNESGRVVELELG---RRKLSGKLSESV-AKLDQLKVL 115

Query: 54  DLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLE 113
           +LT N ++G +       L  L+NL++L+LS N F+  +  SL +L SLR LN+  N   
Sbjct: 116 NLTHNSLSGSIA----ASLLNLSNLEVLDLSSNDFS-GLFPSLINLPSLRVLNVYENSFH 170

Query: 114 GSIDVKELHNFTNLEYLTL 132
           G I     +N   +  + L
Sbjct: 171 GLIPASLCNNLPRIREIDL 189

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
224142721	926	predicted protein [Populus trichocarpa]	0.875	0.212	0.453	1e-33
224145105	280	predicted protein [Populus trichocarpa]	0.875	0.703	0.445	2e-31
224073949	280	predicted protein [Populus trichocarpa]	0.884	0.710	0.431	2e-30
255585991	743	serine-threonine protein kinase, plant-t	0.924	0.279	0.420	2e-30
255581263	912	serine-threonine protein kinase, plant-t	0.804	0.198	0.516	3e-30
224142723	923	predicted protein [Populus trichocarpa]	0.928	0.226	0.423	3e-30
224142499	436	predicted protein [Populus trichocarpa]	0.586	0.302	0.559	1e-29
224120284	929	predicted protein [Populus trichocarpa]	0.893	0.216	0.417	1e-29
224112233	976	leucine rich repeat family protein with	0.888	0.204	0.373	5e-27
224107431	173	predicted protein [Populus trichocarpa]	0.502	0.653	0.568	1e-26

>gi|224142721|ref|XP_002324703.1| predicted protein [Populus trichocarpa] gi|222866137|gb|EEF03268.1| predicted protein [Populus trichocarpa]

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/227 (45%), Positives = 133/227 (58%), Gaps = 30/227 (13%)

Query: 5   TDCCQWERVECSNTTGRVIALDLSYIYSGEY-SWYLNASLFTPFQQLESLDLTQNKIAGC 63
            +CC WER+ C+++TGRV  L L    + E   WYLNASLF PFQQL  L L  N+IAG 
Sbjct: 56  ANCCDWERIVCNSSTGRVTELYLGSTRNEELGDWYLNASLFLPFQQLNILYLWGNRIAGW 115

Query: 64  VENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVK---- 119
           VE +G   L +L+NL++L+L  NSFNNSILS +  L SL+SL L +NRLEGSID+K    
Sbjct: 116 VEKKGGYELQKLSNLEILDLESNSFNNSILSFVEGLPSLKSLYLDYNRLEGSIDLKESLT 175

Query: 120 -------------------ELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFC 160
                              EL N ++LE L L+  SL    LQS+ ++  SLKNLS+   
Sbjct: 176 SLETLSLGGNNISNLVASRELQNLSSLESLYLDDCSLDEHSLQSLGALH-SLKNLSLR-- 232

Query: 161 EVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYL 207
           E+NG V    F   K+LE+ D+ +  I LN S  Q I  +M SLK L
Sbjct: 233 ELNGAVPSGAFLDLKNLEYLDLSY--ITLNNSIFQAI-RTMTSLKTL 276

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145105|ref|XP_002336200.1| predicted protein [Populus trichocarpa] gi|222832534|gb|EEE71011.1| predicted protein [Populus trichocarpa]

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/202 (44%), Positives = 125/202 (61%), Gaps = 5/202 (2%)

Query: 7   CCQWERVECSNTTGRVIALDLSYIYSGEY-SWYLNASLFTPFQQLESLDLTQNKIAGCVE 65
           CC WE + C+++TGRV  LDL  + + E   WYLNASLF PFQQL +L L  N+IAG VE
Sbjct: 58  CCDWESIGCNSSTGRVTELDLWSVRNEELGDWYLNASLFLPFQQLNALSLYGNRIAGWVE 117

Query: 66  NEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFT 125
           N+G   L +L+NL++L+L  NSFNNSILS +  L SL+SL L +NRLEG ID+K  +N  
Sbjct: 118 NKGGYELQKLSNLEILDLGYNSFNNSILSFVEGLPSLKSLYLDYNRLEGLIDLKGPNNLR 177

Query: 126 NLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFA 185
            L    + +      LLQS+ + FP+L  L +S  +  G + G G  +  SLE  ++   
Sbjct: 178 TLSLYNITTYGSSFQLLQSLGA-FPNLTTLYLSSNDFRGRILGDGLQNLSSLE--ELYLD 234

Query: 186 RIALNTSFLQIIGESMPSLKYL 207
             +L+   LQ +G ++ SLK L
Sbjct: 235 GCSLDEHSLQSLG-ALHSLKNL 255

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073949|ref|XP_002335892.1| predicted protein [Populus trichocarpa] gi|222836248|gb|EEE74669.1| predicted protein [Populus trichocarpa]

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/204 (43%), Positives = 123/204 (60%), Gaps = 5/204 (2%)

Query: 5   TDCCQWERVECSNTTGRVIALDLSYIYSGEY-SWYLNASLFTPFQQLESLDLTQNKIAGC 63
            +CC WER+ C+++TGRV  LDL  + + E   WYLNASLF PFQQL  LDL  N+IAG 
Sbjct: 56  ANCCDWERIVCNSSTGRVTLLDLLGVRNEELGDWYLNASLFLPFQQLNILDLWHNRIAGW 115

Query: 64  VENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHN 123
           VEN+G   L +L+NL++L+L  NSFNNSILS +  L SL+SL L +NRLEG ID+K   N
Sbjct: 116 VENKGGYELQKLSNLEILDLEYNSFNNSILSFVERLPSLKSLYLDYNRLEGLIDLKGPSN 175

Query: 124 FTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMR 183
              L    + +      LLQ + + F +L  L +   +  G + G    +  SL+  ++ 
Sbjct: 176 LRTLSLYNITTYGSSFQLLQLLGA-FQNLTTLYLGSNDFRGRILGDALQNLSSLK--ELY 232

Query: 184 FARIALNTSFLQIIGESMPSLKYL 207
               +L+   LQ +G ++PSLK L
Sbjct: 233 LDGCSLDEHSLQSLG-ALPSLKNL 255

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585991|ref|XP_002533665.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223526433|gb|EEF28711.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/240 (42%), Positives = 140/240 (58%), Gaps = 32/240 (13%)

Query: 6   DCCQWERVECSNTTGRVIALDLSYIYSGEYS--WYLNASLFTPFQQLESLDLTQNKIAGC 63
           DCC W +V C+  TGRV AL L     G  S  WYLNASLF PFQ+L++L +  N IAGC
Sbjct: 48  DCCNWNKVVCNTITGRVTALQLGGTRHGWDSKDWYLNASLFLPFQELKNLSVFGNNIAGC 107

Query: 64  VENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHN 123
           +ENEG ERLS L NL++LNL  N+FNN+ILS  +  SSL+SL +  N+L+G ++V+EL+ 
Sbjct: 108 IENEGFERLSTLENLEILNLGYNNFNNNILSFFSDFSSLKSLYMNDNKLKGILNVEELNY 167

Query: 124 -------------------------FTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMS 158
                                    F NL++L L+SS+L+ S LQSI ++  SLK LS+S
Sbjct: 168 LTSLEELKMAGNQIEGFQSLNGFPVFRNLQHLYLDSSTLNNSFLQSIGTL-TSLKALSLS 226

Query: 159 FCEVNGVVRG-QGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTN 217
            C + G +   QG    K LE  D+ F  ++ N   L     ++ SL+ L+LS++    N
Sbjct: 227 KCGLTGTIPSTQGLCELKHLECLDISFNSLSGN---LPWCLANLTSLQQLVLSWNHFNGN 283

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/186 (51%), Positives = 120/186 (64%), Gaps = 5/186 (2%)

Query: 1   GEGATDCCQWERVECSNTTGRVIALDL--SYIYSGEYSWYLNASLFTPFQQLESLDLTQN 58
            E   DCCQWERVECS+ TGRV  LDL  +  Y    +WYLNASLF PF++L+SL L  N
Sbjct: 50  AEDNLDCCQWERVECSSITGRVTRLDLDTTRAYQSSRNWYLNASLFLPFEELKSLSLKGN 109

Query: 59  KIAGCVENEGIERLS-RLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSID 117
            I  CVENEG ERLS RL++L++L+LS NSFN SILSSL+  SSL+SLNL +N  E  I 
Sbjct: 110 SIVDCVENEGFERLSTRLSSLEVLDLSYNSFNESILSSLSEFSSLKSLNLGFNPFEVPIQ 169

Query: 118 VKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRG-QGFPHFKS 176
            ++L NF NLE L L+   L  S LQ++  +  SLK LS+S C + G +   QG      
Sbjct: 170 AQDLPNFENLEELYLDKIELENSFLQTVG-VMTSLKVLSLSGCGLTGALPNVQGLCELIH 228

Query: 177 LEHFDM 182
           L   D+
Sbjct: 229 LRVLDV 234

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142723|ref|XP_002324704.1| predicted protein [Populus trichocarpa] gi|222866138|gb|EEF03269.1| predicted protein [Populus trichocarpa]

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/229 (42%), Positives = 130/229 (56%), Gaps = 20/229 (8%)

Query: 2   EGATDCCQWERVECSNTTGRVIALDLSYIYSGEY-SWYLNASLFTPFQQLESLDLTQNKI 60
           +G   CC WE + C ++TGRV  LDL  +   E   WYLNASLF PFQQL  L LT N+I
Sbjct: 40  KGDAHCCDWESIICDSSTGRVTELDLEGVRDRELGDWYLNASLFLPFQQLNGLYLTANRI 99

Query: 61  AGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVK- 119
           AG VE +G    SRL+NL+ L+L  N F+NSILS +  LSSL+SL L +NRLEG ID+K 
Sbjct: 100 AGLVEKKGGYEQSRLSNLEYLDLGINGFDNSILSYVERLSSLKSLYLNYNRLEGLIDLKG 159

Query: 120 --ELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQG------- 170
             EL   +NLE+L L  +    S+L  +  I  SLK+L + +  V G++  +G       
Sbjct: 160 GYELTKSSNLEHLDLGYNRFDNSILSFVEGI-SSLKSLYLDYNRVEGLIDLKGSSFQFLG 218

Query: 171 -FPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNS 218
            FP+   L   D  F    L         +++ SL+YL L  S+L  +S
Sbjct: 219 SFPNLTRLYLEDNDFRGRILEF-------QNLSSLEYLYLDGSSLDEHS 260

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142499|ref|XP_002324594.1| predicted protein [Populus trichocarpa] gi|222866028|gb|EEF03159.1| predicted protein [Populus trichocarpa]

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/134 (55%), Positives = 94/134 (70%), Gaps = 2/134 (1%)

Query: 7   CCQWERVECSN-TTGRVIALDLSYIYSGEY-SWYLNASLFTPFQQLESLDLTQNKIAGCV 64
           CC W+RV CSN TT RVI ++L +         YLNAS+F PFQ+L  LDL+ N IAGCV
Sbjct: 61  CCSWKRVTCSNSTTRRVIEINLYFTRDRSMEDLYLNASIFLPFQELNVLDLSGNGIAGCV 120

Query: 65  ENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNF 124
            NEG ERLSRL  L++L LS N FNNSILSS+  LSSL+ LNL +N+L+GSID KE  + 
Sbjct: 121 ANEGFERLSRLAKLEVLLLSDNYFNNSILSSMKGLSSLKYLNLDFNQLQGSIDTKEFDSL 180

Query: 125 TNLEYLTLESSSLH 138
           +NLE L+L  + + 
Sbjct: 181 SNLEELSLAKNEIQ 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120284|ref|XP_002331010.1| predicted protein [Populus trichocarpa] gi|222872940|gb|EEF10071.1| predicted protein [Populus trichocarpa]

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/211 (41%), Positives = 129/211 (61%), Gaps = 10/211 (4%)

Query: 5   TDCCQWERVECSNTTGRVIALDLSYIYSGEY-SWYLNASLFTPFQQLESLDLTQNKIAGC 63
            +CC+W++V+C++TT RV+ +DLS+    E   W LNASLF PF +L +L+L  N+IAGC
Sbjct: 58  ANCCEWKQVQCNSTTLRVVKIDLSFSRGWELGDWLLNASLFLPFPELNALNLYGNRIAGC 117

Query: 64  VENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVK---- 119
           +ENEG ERLS L NL++L L  N FN+SI SSL  LSSL++L+L  N +EG+I V+    
Sbjct: 118 LENEGFERLSVLGNLEILELGQNKFNSSIFSSLGGLSSLKNLSLHNNEIEGTISVEGGED 177

Query: 120 ELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEH 179
           E+   +NLEYL L  +    S+L S   +  SLKNL +    + G    +G   F +L  
Sbjct: 178 EVLKMSNLEYLDLGGNRFDNSILSSFKGL-SSLKNLGLEKNHLKGTFNMKGIRGFGNLSR 236

Query: 180 ---FDMRFARIALNTSFLQIIGESMPSLKYL 207
              F++      ++   LQ + + +P+LK L
Sbjct: 237 VRLFNITANGRRISLPLLQSLAK-LPNLKTL 266

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112233|ref|XP_002332812.1| leucine rich repeat family protein with ABC domain [Populus trichocarpa] gi|222833206|gb|EEE71683.1| leucine rich repeat family protein with ABC domain [Populus trichocarpa]

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 102/273 (37%), Positives = 135/273 (49%), Gaps = 73/273 (26%)

Query: 7   CCQWERVECSNTTGRVIALDLSYIYSGEY-SWYLNASLFTPFQQLESLDLTQNKIAGCVE 65
           CC WE + C+++TGRV  LDL  + + +   WYLNASLF PFQQL  L L  N+IAG VE
Sbjct: 53  CCDWESIVCNSSTGRVTVLDLWGVRNEDLGDWYLNASLFLPFQQLNVLYLWNNRIAGWVE 112

Query: 66  NEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKE----- 120
           N+G   L +L+NL+ L L  NSFNNSILS +  L SL+SL L +NRLEG ID+KE     
Sbjct: 113 NKGGSELQKLSNLESLYLEDNSFNNSILSFVEGLPSLKSLYLSYNRLEGLIDLKESLSSL 172

Query: 121 ---------------LHNFTNLEYLTLESSSLHISLLQSIASI--FPS------------ 151
                              +NL YL+L + + + S  Q + S+  FP+            
Sbjct: 173 ETLGLGGNNISKLVASRGLSNLRYLSLYNITTYGSSFQLLQSLRAFPNLTTLYLGSNDFR 232

Query: 152 -------LKNLS----------------------------MSFCEVNGVVRGQGFPHFKS 176
                  L+NLS                            +S  E+NG V    F   K+
Sbjct: 233 GRILGDELQNLSSLKMLYLDGCSLDEHSLQSLGALSSLKNLSLQELNGTVPSGDFLDLKN 292

Query: 177 LEHFDMRFARIALNTSFLQIIGESMPSLKYLLL 209
           LE+ D+  +  ALN S  Q IG +M SLK L+L
Sbjct: 293 LEYLDL--SNTALNNSIFQAIG-TMTSLKTLIL 322

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107431|ref|XP_002333512.1| predicted protein [Populus trichocarpa] gi|222837050|gb|EEE75429.1| predicted protein [Populus trichocarpa]

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/116 (56%), Positives = 85/116 (73%), Gaps = 3/116 (2%)

Query: 7   CCQWERVECSNTTGRVIALDLSYIYSGEYS---WYLNASLFTPFQQLESLDLTQNKIAGC 63
           CC WE V CSN+T     +++   Y+ ++S   WYLNAS+F PFQ+L+ LDL  N+IA C
Sbjct: 56  CCSWEGVTCSNSTTTRRVVEIHLYYTRDWSMGDWYLNASIFLPFQELKVLDLGANRIACC 115

Query: 64  VENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVK 119
           V NEG ERLSRL  L++L LS N+FNNSILSS+  LSSL+ LNL +N+L+GSID K
Sbjct: 116 VANEGFERLSRLAKLEVLYLSLNNFNNSILSSMKGLSSLKYLNLDFNQLQGSIDTK 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.791	0.196	0.322	2.1e-18
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.546	0.126	0.359	2.2e-15
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.546	0.131	0.351	1.4e-13
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.733	0.170	0.275	3.9e-13
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.791	0.199	0.262	1.7e-10
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.515	0.123	0.320	2.3e-10
TAIR|locus:2119535	725	RLP48 "receptor like protein 4	0.311	0.096	0.426	1.4e-09
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.36	0.092	0.344	2.7e-09
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.848	0.176	0.277	5.2e-09
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.506	0.114	0.301	6.4e-07

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 2.1e-18, P = 2.1e-18
 Identities = 58/180 (32%), Positives = 83/180 (46%)

Query:     5 TDCCQWERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCV 64
             +DCCQWE ++C+ T+ R+  L L   Y  E S  LN SL  PF+++ SLDL+ +++ G V
Sbjct:    50 SDCCQWENIKCNRTSRRLTGLSLYTSYYLEIS-LLNLSLLHPFEEVRSLDLSNSRLNGLV 108

Query:    65 EN-EGIERLSRLNNLKMLNLSGNSFXXXXXXXXXXXXXXXXXXXXXXXXEGSIDVKELHN 123
             ++ EG + L RL NL++LN S N F                         G I +KEL N
Sbjct:   109 DDVEGYKSLRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLKELKN 168

Query:   124 FTNLEYXXXXXXXXXXXXXXXXXXXFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMR 183
              TNLE                       LK L +S   +   +  Q F   K+L+  D+R
Sbjct:   169 LTNLELLDLSGNRIDGSMPVREFPYLKKLKALDLSSNGIYSSMEWQVFCEMKNLQELDLR 228

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
 Identities = 46/128 (35%), Positives = 67/128 (52%)

Query:     5 TDCCQWERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLT---QNKIA 61
             ++CC+WE ++C+ T+GR+I L +      E S  LN SL  PF++L SL+L+    N+  
Sbjct:    64 SNCCRWEGLKCNQTSGRIIELSIGQTNFKESS-LLNLSLLHPFEELRSLNLSGEIYNEFN 122

Query:    62 GCVEN-EGIERLSRLNNLKMLNLSGNSFXXXXXXXXXXXXXXXXXXXXXXXXEGSIDVKE 120
             G  ++ EG E L RL NL++L+LS NSF                         G + +KE
Sbjct:   123 GLFDDVEGYESLRRLRNLEILDLSSNSFNNSIFPFLNAATSLTTLFIQSNYIGGPLPIKE 182

Query:   121 LHNFTNLE 128
             L N T LE
Sbjct:   183 LKNLTKLE 190

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 45/128 (35%), Positives = 67/128 (52%)

Query:     5 TDCCQWERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQ---NKIA 61
             +DCCQW+ ++C+ T+GRVI L +  +Y  E S  LN SL  PF+++ SL+L+    N+  
Sbjct:    50 SDCCQWDGIKCNRTSGRVIELSVGDMYFKESS-PLNLSLLHPFEEVRSLNLSTEGYNEFN 108

Query:    62 GCVEN-EGIERLSRLNNLKMLNLSGNSFXXXXXXXXXXXXXXXXXXXXXXXXEGSIDVKE 120
             G  ++ EG   LS L NLK+++LS N F                        +G   +K 
Sbjct:   109 GFFDDVEGYRSLSGLRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKG 168

Query:   121 LHNFTNLE 128
             L + TNLE
Sbjct:   169 LKDLTNLE 176

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 3.9e-13, P = 3.9e-13
 Identities = 46/167 (27%), Positives = 74/167 (44%)

Query:     5 TDCCQWERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCV 64
             +DCC+W+ V C+  +GRV  +    +   + S  LN SL  PF+ + SL+L+ ++ +G  
Sbjct:    61 SDCCRWKGVACNRVSGRVTEISFGGLSLKDNS-LLNLSLLHPFEDVRSLNLSSSRCSGLF 119

Query:    65 EN-EGIERLSRLNNLKMLNLSGNSFXXXXXXXXXXXXXXXXXXXXXXXXEGSIDVKELHN 123
             ++ EG + L +L  L++L+L+ N F                        +GS   KEL +
Sbjct:   120 DDVEGYKSLRKLRKLEILDLASNKFNNSIFHFLSAATSLTTLFLRSNNMDGSFPAKELRD 179

Query:   124 FTNLEYXXXXXXXXXXXXXXXXXXXFPSLKNLSMSFCEVNGVVRGQG 170
              TNLE                       LK L +S  E +G +  QG
Sbjct:   180 LTNLELLDLSRNRFNGSIPIQELSSLRKLKALDLSGNEFSGSMELQG 226

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 48/183 (26%), Positives = 79/183 (43%)

Query:     7 CCQWERVECSNTTGRVIALDLSY--IYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCV 64
             CC W R++C  T+ RVI + LS   I   +    LN + F PF++L+SL+L+     G  
Sbjct:     7 CCHWRRIKCDITSKRVIGISLSLESIRPPDPLPQLNLTFFYPFEELQSLNLSSGYFKGWF 66

Query:    65 -ENEGIERLSRLNNLKMLNLSGNSFXXXXXXXXXXXXXXXXXXXXXXXXEGSIDVKELHN 123
              E +G + L  L NL+ L+L  N +                        +G   V+EL N
Sbjct:    67 DERKGGKGLGSLRNLETLDLGVNFYDTSVLPYLNEAVSLKTLILHDNLFKGGFPVQELIN 126

Query:   124 FTNLEYXXXXXXXXXXXXXXXXXXXFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMR 183
              T+LE                      +L+ L +S  + +G ++ QG    + L+  ++R
Sbjct:   127 LTSLEVLDLKFNKFSGQLPTQELTNLRNLRALDLSNNKFSGSLQKQGICRLEQLQ--ELR 184

Query:   184 FAR 186
              +R
Sbjct:   185 LSR 187

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
 Identities = 41/128 (32%), Positives = 59/128 (46%)

Query:     5 TDCCQWERVECSNTTGRVIALDLS--YIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAG 62
             +DCC WE + C   +G VI LDLS  ++Y    S++ N+SLF   Q L  LDLTQN + G
Sbjct:    84 SDCCNWEGITCDTKSGEVIELDLSCSWLYG---SFHSNSSLFR-LQNLRVLDLTQNDLDG 139

Query:    63 CVENEGIERLSRLNNLKMLNLSGNSFXXXXXXXXXXXXXXXXXXXXXXXXEGSI--DVKE 120
              + +     +  L++L  L+LS N F                         G I   +  
Sbjct:   140 EIPSS----IGNLSHLTSLHLSYNQFLGLIPSSIENLSRLTSLHLSSNQFSGQIPSSIGN 195

Query:   121 LHNFTNLE 128
             L + T+LE
Sbjct:   196 LSHLTSLE 203

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119535 RLP48 "receptor like protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 32/75 (42%), Positives = 43/75 (57%)

Query:     5 TDCCQWERVECSNTTGRVIALDL-SYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGC 63
             TDCC W RV C   TG+V+ LDL S   +G      N+SLF   Q L+SL+L+ N I+G 
Sbjct:    71 TDCCSWNRVSCDPKTGKVVELDLMSSCLNGPLR--SNSSLFR-LQHLQSLELSSNNISGI 127

Query:    64 VENEGIERLSRLNNL 78
             +  + I  L  L +L
Sbjct:   128 LP-DSIGNLKYLRSL 141

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
 Identities = 31/90 (34%), Positives = 50/90 (55%)

Query:     2 EGATDCCQWERVECSNTTGRVIALDLSYIYSGEYSWY---LNASLFTPFQQLESLDLTQN 58
             E  +DCC W+ + C   TG VI +DL  + S  + W+    N S+   F  L +LDL+ N
Sbjct:    64 ENGSDCCHWDGITCDAKTGEVIEIDL--MCSCLHGWFHSNSNLSMLQNFHFLTTLDLSYN 121

Query:    59 KIAGCVENEGIERLSRLNNLKMLNLSGNSF 88
              ++G + +     +  L++L  L+LSGN+F
Sbjct:   122 HLSGQISSS----IGNLSHLTTLDLSGNNF 147

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 5.2e-09, P = 5.2e-09
 Identities = 56/202 (27%), Positives = 78/202 (38%)

Query:     6 DCCQWERVECSNT-TGRVIALDLSYIYSGEYSWY---LNASLFTPFQQLESLDLTQNKIA 61
             DCC+WERV+CS+   G VI L L  +    +      LN SL   F QL+SL+L+ N   
Sbjct:    36 DCCRWERVKCSDAINGHVIGLSLDRLVPVAFESQTRSLNLSLLHSFPQLQSLNLSWNWFT 95

Query:    62 GCVENE-GIERLSRLNNLKMLNLSGNSFXXXXXXXXXXXXXXXXXXXXXXXXEGSIDVKE 120
                ++  G +    L+ L  L+ S N F                        EG    +E
Sbjct:    96 NLSDHFLGFKSFGTLDKLTTLDFSHNMFDNSIVPFLNAATSIRSLHLESNYMEGVFPPQE 155

Query:   121 LHNFTNLEYXXXXXXXXXXXXXXXXXXXFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHF 180
             L N TNL                     F  L+ L +SF  VN           K L+  
Sbjct:   156 LSNMTNLRVLNLKDNSFSFLSSQGLTD-FRDLEVLDLSFNGVNDSEASHSLSTAK-LKTL 213

Query:   181 DMRFARIALNTSFLQIIG-ESM 201
             D+ F  ++    F Q+ G ES+
Sbjct:   214 DLNFNPLS---DFSQLKGLESL 232

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 6.4e-07, P = 6.4e-07
 Identities = 38/126 (30%), Positives = 58/126 (46%)

Query:    13 VECSNTTGRV--IALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNK------IAGCV 64
             VEC+  +GR+  IA  + +I        LN SL  PF+ + SLDL+ ++       +G  
Sbjct:     3 VECNRKSGRITNIAFGIGFIIENPL---LNLSLLHPFEDVRSLDLSSSRSCEDCGFSGLF 59

Query:    65 EN-EGIERLSRLNNLKMLNLSGNSFXXXXXXXXXXXXXXXXXXXXXXXXEGSIDVKELHN 123
             ++ EG + LSRL NL++L+LS + F                             VKE  +
Sbjct:    60 DDVEGYKSLSRLRNLEILDLSSHRFNNSIFPFLNAATSLTTLFLTYNNMHSPFLVKEFKD 119

Query:   124 FTNLEY 129
              TNLE+
Sbjct:   120 LTNLEH 125

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XVIII1213 hypothetical protein (926 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	225
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.8 bits (119), Expect = 3e-07
 Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 12/88 (13%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
            + L+S++L+ N I G +       L  + +L++L+LS NSFN SI  SL  L+SLR LN
Sbjct: 441 LRHLQSINLSGNSIRGNIPPS----LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496

Query: 107 LLWNRLEG----SIDVKELH----NFTN 126
           L  N L G    ++  + LH    NFT+
Sbjct: 497 LNGNSLSGRVPAALGGRLLHRASFNFTD 524

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 72  LSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLT 131
           +S+L +L+ +NLSGNS   +I  SL  ++SL  L+L +N   GSI  + L   T+L  L 
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-ESLGQLTSLRILN 496

Query: 132 LESSSL 137
           L  +SL
Sbjct: 497 LNGNSL 502

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.0 bits (109), Expect = 6e-06
 Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 29/153 (18%)

Query: 6   DCCQWERVECSNTTGRVIALDLS----------------YIY-----SGEYSWYLNASLF 44
           D C W+ + C+N++ RV+++DLS                YI      + + S  +   +F
Sbjct: 56  DVCLWQGITCNNSS-RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIF 114

Query: 45  TPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRS 104
           T    L  L+L+ N   G +          + NL+ L+LS N  +  I + +   SSL+ 
Sbjct: 115 TTSSSLRYLNLSNNNFTGSIPR------GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168

Query: 105 LNLLWNRLEGSIDVKELHNFTNLEYLTLESSSL 137
           L+L  N L G I    L N T+LE+LTL S+ L
Sbjct: 169 LDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQL 200

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.0 bits (109), Expect = 8e-06
 Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 6/118 (5%)

Query: 20  GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLK 79
           G +  L   ++Y  + S  +  S+F+  Q+L SLDL+ N ++G    E  E + +L NL+
Sbjct: 257 GNLKNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDLSDNSLSG----EIPELVIQLQNLE 311

Query: 80  MLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSL 137
           +L+L  N+F   I  +LT L  L+ L L  N+  G I  K L    NL  L L +++L
Sbjct: 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP-KNLGKHNNLTVLDLSTNNL 368

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 7/116 (6%)

Query: 49  QLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLL 108
            L+ L L +NK  G     G+        L+ L+LS N F+ ++   L  LS L  L L 
Sbjct: 453 SLQMLSLARNKFFG-----GLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS 507

Query: 109 WNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNG 164
            N+L G I   EL +   L  L L  + L   +  S +   P L  L +S  +++G
Sbjct: 508 ENKLSGEIP-DELSSCKKLVSLDLSHNQLSGQIPASFSE-MPVLSQLDLSQNQLSG 561

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 5/98 (5%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103
                +L  L L++NK++G + +E    LS    L  L+LS N  +  I +S + +  L 
Sbjct: 495 LGSLSELMQLKLSENKLSGEIPDE----LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS 550

Query: 104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISL 141
            L+L  N+L G I  K L N  +L  + +  + LH SL
Sbjct: 551 QLDLSQNQLSGEIP-KNLGNVESLVQVNISHNHLHGSL 587

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 5/88 (5%)

Query: 50  LESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLW 109
           LE+LDL+ N ++G + N+    +   ++LK+L+L GN     I +SLT+L+SL  L L  
Sbjct: 142 LETLDLSNNMLSGEIPND----IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197

Query: 110 NRLEGSIDVKELHNFTNLEYLTLESSSL 137
           N+L G I   EL    +L+++ L  ++L
Sbjct: 198 NQLVGQIPR-ELGQMKSLKWIYLGYNNL 224

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 48  QQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNL 107
           ++LE+LDL++N+ +G V      +L  L+ L  L LS N  +  I   L+    L SL+L
Sbjct: 475 KRLENLDLSRNQFSGAVPR----KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530

Query: 108 LWNRLEGSI 116
             N+L G I
Sbjct: 531 SHNQLSGQI 539

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 49  QLESLDLTQNKIAGCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
            L+SLDL+ N++        I       L NLK+L+LSGN+  +    + + L SLRSL+
Sbjct: 1   NLKSLDLSNNRL------TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLD 54

Query: 107 LLWNRL 112
           L  N L
Sbjct: 55  LSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.92
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.85
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.74
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.65
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.65
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.62
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.6
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.6
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.5
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.48
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.45
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.41
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.4
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.35
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.35
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.34
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.33
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.31
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.3
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.29
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.27
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.26
PLN03150	623	hypothetical protein; Provisional	99.25
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.24
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.23
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.18
KOG2982	418	consensus Uncharacterized conserved protein [Funct	99.16
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.12
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.04
PLN03150	623	hypothetical protein; Provisional	99.02
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.02
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.01
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.95
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.95
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.87
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.78
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.78
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.77
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.62
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.61
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.53
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.41
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.39
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.38
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.32
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.3
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.28
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.26
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.21
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.2
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.2
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.15
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.12
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.9
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.76
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.72
KOG4341	483	consensus F-box protein containing LRR [General fu	97.69
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.38
KOG4308	478	consensus LRR-containing protein [Function unknown	97.31
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.3
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.29
PRK15386	426	type III secretion protein GogB; Provisional	97.22
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.18
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.09
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.04
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.76
PRK15386	426	type III secretion protein GogB; Provisional	96.72
KOG4308	478	consensus LRR-containing protein [Function unknown	96.66
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.13
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.99
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.91
KOG4341	483	consensus F-box protein containing LRR [General fu	95.89
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.6
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.91
smart00370	26	LRR Leucine-rich repeats, outliers.	94.71
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.71
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	92.55
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	87.93
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	85.72
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	85.42
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	84.03
KOG0473	326	consensus Leucine-rich repeat protein [Function un	83.62
KOG0473	326	consensus Leucine-rich repeat protein [Function un	82.34

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.92  E-value=2.1e-24  Score=194.63  Aligned_cols=206  Identities=27%  Similarity=0.471  Sum_probs=131.4

Q ss_pred             CCCcccCCCceeecCCcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEE
Q 045865            3 GATDCCQWERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLN   82 (225)
Q Consensus         3 ~~~~~c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~   82 (225)
                      .+++||.|.|+.|.. .++|+.|+++++.+..    ..+..+..+++|+.|++++|.+.+..|..   .+..+.+|++|+
T Consensus        53 ~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~----~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~---~~~~l~~L~~L~  124 (968)
T PLN00113         53 SSADVCLWQGITCNN-SSRVVSIDLSGKNISG----KISSAIFRLPYIQTINLSNNQLSGPIPDD---IFTTSSSLRYLN  124 (968)
T ss_pred             CCCCCCcCcceecCC-CCcEEEEEecCCCccc----cCChHHhCCCCCCEEECCCCccCCcCChH---HhccCCCCCEEE
Confidence            457899999999984 5789999999998763    34556788888888888888887656653   233556666666


Q ss_pred             CCCCCCC----------------------hhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHH
Q 045865           83 LSGNSFN----------------------NSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHIS  140 (225)
Q Consensus        83 l~~~~l~----------------------~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~  140 (225)
                      +++|.++                      +..|..+..+++|++|++++|.+.+..|. .+..+++|++|++++|.+.+.
T Consensus       125 Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~  203 (968)
T PLN00113        125 LSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQLVGQ  203 (968)
T ss_pred             CcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh-hhhhCcCCCeeeccCCCCcCc
Confidence            6655554                      33444455555555555555555444443 455555566666665555544


Q ss_pred             HHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccch
Q 045865          141 LLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSR  220 (225)
Q Consensus       141 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~  220 (225)
                      .|..+.. +++|+.|++++|.+.+..|. .+.++++|++|++++|  ...+.+|..++. +++|+.|++++|.+++..|.
T Consensus       204 ~p~~l~~-l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n--~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~  278 (968)
T PLN00113        204 IPRELGQ-MKSLKWIYLGYNNLSGEIPY-EIGGLTSLNHLDLVYN--NLTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPP  278 (968)
T ss_pred             CChHHcC-cCCccEEECcCCccCCcCCh-hHhcCCCCCEEECcCc--eeccccChhHhC-CCCCCEEECcCCeeeccCch
Confidence            5555555 56666666666665555555 5566666666666666  334455666666 66666666666666666655


Q ss_pred             hh
Q 045865          221 IL  222 (225)
Q Consensus       221 ~~  222 (225)
                      .+
T Consensus       279 ~l  280 (968)
T PLN00113        279 SI  280 (968)
T ss_pred             hH
Confidence            44

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.85  E-value=4.6e-21  Score=173.07  Aligned_cols=89  Identities=33%  Similarity=0.488  Sum_probs=36.7

Q ss_pred             hcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhcc
Q 045865           44 FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHN  123 (225)
Q Consensus        44 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  123 (225)
                      +..+++|++|++++|.+.+..|.    .+..+++|++|++++|.+.+..|..+..+.+|+.|++.+|.+.+.+|. .+..
T Consensus       160 ~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~  234 (968)
T PLN00113        160 IGSFSSLKVLDLGGNVLVGKIPN----SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY-EIGG  234 (968)
T ss_pred             HhcCCCCCEEECccCcccccCCh----hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh-hHhc
Confidence            34444444444444444433333    344444444444444444433344444444444444444443333332 3333


Q ss_pred             CCCCceeecCCCCC
Q 045865          124 FTNLEYLTLESSSL  137 (225)
Q Consensus       124 l~~L~~l~l~~~~~  137 (225)
                      +++|+.|++.+|.+
T Consensus       235 l~~L~~L~L~~n~l  248 (968)
T PLN00113        235 LTSLNHLDLVYNNL  248 (968)
T ss_pred             CCCCCEEECcCcee
Confidence            33344444433333

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.74  E-value=4.7e-19  Score=144.54  Aligned_cols=190  Identities=21%  Similarity=0.263  Sum_probs=119.2

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH   98 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~   98 (225)
                      .++++.|+|.+|-+.    ++.++.+..++.|++||++.|.|...-.+    .|..-.++++|+|+.|.|+......|..
T Consensus       124 sghl~~L~L~~N~I~----sv~se~L~~l~alrslDLSrN~is~i~~~----sfp~~~ni~~L~La~N~It~l~~~~F~~  195 (873)
T KOG4194|consen  124 SGHLEKLDLRHNLIS----SVTSEELSALPALRSLDLSRNLISEIPKP----SFPAKVNIKKLNLASNRITTLETGHFDS  195 (873)
T ss_pred             ccceeEEeeeccccc----cccHHHHHhHhhhhhhhhhhchhhcccCC----CCCCCCCceEEeeccccccccccccccc
Confidence            456788888888777    66667777777777777777776653222    3555566777777777666555556666


Q ss_pred             CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCc------------------------HHHHHHHHhhCCCCCE
Q 045865           99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLH------------------------ISLLQSIASIFPSLKN  154 (225)
Q Consensus        99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~------------------------~~~~~~~~~~~~~L~~  154 (225)
                      +.+|..|.+++|+++ .+|...|.+++.|+.|+|.+|++.                        ...-..++. +.++++
T Consensus       196 lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~-l~kme~  273 (873)
T KOG4194|consen  196 LNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYG-LEKMEH  273 (873)
T ss_pred             cchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceee-ecccce
Confidence            666666666666665 555545555666666666655543                        111122232 566667


Q ss_pred             EeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865          155 LSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL  222 (225)
Q Consensus       155 L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~  222 (225)
                      |++..|++... ...++.+++.|+.|+++.|.|  .+.-++.+.. +++|+.|+|++|+|+.-.+..|
T Consensus       274 l~L~~N~l~~v-n~g~lfgLt~L~~L~lS~NaI--~rih~d~Wsf-tqkL~~LdLs~N~i~~l~~~sf  337 (873)
T KOG4194|consen  274 LNLETNRLQAV-NEGWLFGLTSLEQLDLSYNAI--QRIHIDSWSF-TQKLKELDLSSNRITRLDEGSF  337 (873)
T ss_pred             eecccchhhhh-hcccccccchhhhhccchhhh--heeecchhhh-cccceeEeccccccccCChhHH
Confidence            77777766533 333677777777888887744  3444556666 8888888888888876555443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.73  E-value=7.1e-19  Score=143.54  Aligned_cols=162  Identities=22%  Similarity=0.304  Sum_probs=115.3

Q ss_pred             ecCCcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHH
Q 045865           15 CSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILS   94 (225)
Q Consensus        15 ~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~   94 (225)
                      |.+....++.|+|++|++.    .+....|..+.+|.+|.++.|+++. .|..   .|+.+++|+.|+|..|.+...-..
T Consensus       168 sfp~~~ni~~L~La~N~It----~l~~~~F~~lnsL~tlkLsrNritt-Lp~r---~Fk~L~~L~~LdLnrN~irive~l  239 (873)
T KOG4194|consen  168 SFPAKVNIKKLNLASNRIT----TLETGHFDSLNSLLTLKLSRNRITT-LPQR---SFKRLPKLESLDLNRNRIRIVEGL  239 (873)
T ss_pred             CCCCCCCceEEeecccccc----ccccccccccchheeeecccCcccc-cCHH---Hhhhcchhhhhhccccceeeehhh
Confidence            3334467899999999998    7788889999999999999999988 4443   678899999999999988654466


Q ss_pred             hhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCC
Q 045865           95 SLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHF  174 (225)
Q Consensus        95 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  174 (225)
                      .|.++++|+.|.+.+|++. .+....|..+.++++|+|..|++......+++. +.+|+.|++++|.|...-++ .+..+
T Consensus       240 tFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg-Lt~L~~L~lS~NaI~rih~d-~Wsft  316 (873)
T KOG4194|consen  240 TFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG-LTSLEQLDLSYNAIQRIHID-SWSFT  316 (873)
T ss_pred             hhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccc-cchhhhhccchhhhheeecc-hhhhc
Confidence            7888888888888888886 444446667777777777777665433344444 56666666666655533233 55555


Q ss_pred             CCCcEEEccCCcc
Q 045865          175 KSLEHFDMRFARI  187 (225)
Q Consensus       175 ~~L~~l~l~~n~i  187 (225)
                      .+|+.|+++.|+|
T Consensus       317 qkL~~LdLs~N~i  329 (873)
T KOG4194|consen  317 QKLKELDLSSNRI  329 (873)
T ss_pred             ccceeEecccccc
Confidence            5555555555544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.73  E-value=3e-20  Score=130.15  Aligned_cols=162  Identities=25%  Similarity=0.363  Sum_probs=129.2

Q ss_pred             hcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhcc
Q 045865           44 FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHN  123 (225)
Q Consensus        44 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  123 (225)
                      +..++.++.|.+++|.+.. .|+    .+..+.+|+.|++.+|+++. +|..++.++.|+.|+++.|++. ..|. .|+.
T Consensus        29 Lf~~s~ITrLtLSHNKl~~-vpp----nia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lpr-gfgs  100 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTV-VPP----NIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPR-GFGS  100 (264)
T ss_pred             ccchhhhhhhhcccCceee-cCC----cHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCcc-ccCC
Confidence            3456777888888888877 444    37788888888888888877 7778888888999998888886 7776 8888


Q ss_pred             CCCCceeecCCCCCc-HHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCC
Q 045865          124 FTNLEYLTLESSSLH-ISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMP  202 (225)
Q Consensus       124 l~~L~~l~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~  202 (225)
                      ++-|+.|++..|.+. ..+|..++. +.-|+.|++++|.+. ..|. .++++++|+.+.+..|.+   -++|+.++. +.
T Consensus       101 ~p~levldltynnl~e~~lpgnff~-m~tlralyl~dndfe-~lp~-dvg~lt~lqil~lrdndl---l~lpkeig~-lt  173 (264)
T KOG0617|consen  101 FPALEVLDLTYNNLNENSLPGNFFY-MTTLRALYLGDNDFE-ILPP-DVGKLTNLQILSLRDNDL---LSLPKEIGD-LT  173 (264)
T ss_pred             CchhhhhhccccccccccCCcchhH-HHHHHHHHhcCCCcc-cCCh-hhhhhcceeEEeeccCch---hhCcHHHHH-HH
Confidence            888899998887765 345677777 888888889888886 6666 788889999999888844   467888888 88


Q ss_pred             CCcEEEccCCcCCCccch
Q 045865          203 SLKYLLLSYSTLGTNSSR  220 (225)
Q Consensus       203 ~L~~L~l~~n~l~~~~~~  220 (225)
                      .|+.|++.+|+++..+|+
T Consensus       174 ~lrelhiqgnrl~vlppe  191 (264)
T KOG0617|consen  174 RLRELHIQGNRLTVLPPE  191 (264)
T ss_pred             HHHHHhcccceeeecChh
Confidence            899999999999855554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=3.6e-19  Score=124.79  Aligned_cols=188  Identities=18%  Similarity=0.250  Sum_probs=153.6

Q ss_pred             CcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhh
Q 045865           18 TTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT   97 (225)
Q Consensus        18 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~   97 (225)
                      ..+.+++|.+++|.+.    . .+.-++.+.+|+.|++.+|.|.. .|.    .++.+++|+.|+++.|.+.. +|..|+
T Consensus        31 ~~s~ITrLtLSHNKl~----~-vppnia~l~nlevln~~nnqie~-lp~----~issl~klr~lnvgmnrl~~-lprgfg   99 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT----V-VPPNIAELKNLEVLNLSNNQIEE-LPT----SISSLPKLRILNVGMNRLNI-LPRGFG   99 (264)
T ss_pred             chhhhhhhhcccCcee----e-cCCcHHHhhhhhhhhcccchhhh-cCh----hhhhchhhhheecchhhhhc-CccccC
Confidence            3568899999999986    3 44456889999999999999988 666    58999999999999998865 788999


Q ss_pred             cCCCCCEEEcCCCCCCCc-cchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCC
Q 045865           98 HLSSLRSLNLLWNRLEGS-IDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKS  176 (225)
Q Consensus        98 ~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  176 (225)
                      .++.|+.||+..|.+... +|. .|.-+..|+.|++++|.+. .+|..+++ +++|++|.+.+|.+. ..|. .++.+..
T Consensus       100 s~p~levldltynnl~e~~lpg-nff~m~tlralyl~dndfe-~lp~dvg~-lt~lqil~lrdndll-~lpk-eig~lt~  174 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNENSLPG-NFFYMTTLRALYLGDNDFE-ILPPDVGK-LTNLQILSLRDNDLL-SLPK-EIGDLTR  174 (264)
T ss_pred             CCchhhhhhccccccccccCCc-chhHHHHHHHHHhcCCCcc-cCChhhhh-hcceeEEeeccCchh-hCcH-HHHHHHH
Confidence            999999999999988743 555 7888899999999999986 67888998 999999999999876 6777 8999999


Q ss_pred             CcEEEccCCccccchhHHHHHhhcCC---CCcEEEccCCcCCCccchhhccC
Q 045865          177 LEHFDMRFARIALNTSFLQIIGESMP---SLKYLLLSYSTLGTNSSRILHQG  225 (225)
Q Consensus       177 L~~l~l~~n~i~~~~~~~~~l~~~~~---~L~~L~l~~n~l~~~~~~~~~~~  225 (225)
                      |+.+++.+|++   ..+|..++. +.   +-+.+.+..|....++.+-|..|
T Consensus       175 lrelhiqgnrl---~vlppel~~-l~l~~~k~v~r~E~NPwv~pIaeQf~lG  222 (264)
T KOG0617|consen  175 LRELHIQGNRL---TVLPPELAN-LDLVGNKQVMRMEENPWVNPIAEQFLLG  222 (264)
T ss_pred             HHHHhccccee---eecChhhhh-hhhhhhHHHHhhhhCCCCChHHHHHHhh
Confidence            99999999977   345665554 22   33456777777776766655443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.65  E-value=3e-15  Score=119.30  Aligned_cols=197  Identities=22%  Similarity=0.191  Sum_probs=99.1

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcC-CCCCEEECCCCCCCh----hhHH
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRL-NNLKMLNLSGNSFNN----SILS   94 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~~----~~~~   94 (225)
                      .+++.|+++++.+.............. ++|+.|++++|.+...........+..+ ++|+.|++++|.+++    ..+.
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            356666666665542111111112222 3366666666655432222222234445 666666666666652    1233


Q ss_pred             hhhcCCCCCEEEcCCCCCCCccch---hhhccCCCCceeecCCCCCcHHH----HHHHHhhCCCCCEEeccccccccccc
Q 045865           95 SLTHLSSLRSLNLLWNRLEGSIDV---KELHNFTNLEYLTLESSSLHISL----LQSIASIFPSLKNLSMSFCEVNGVVR  167 (225)
Q Consensus        95 ~l~~l~~L~~L~l~~n~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~  167 (225)
                      .+..+..|++|++.+|.+.+....   ..+...++|+.|++++|.+.+..    ...+.. +++|+.|++++|.+++...
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~-~~~L~~L~ls~n~l~~~~~  238 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLAS-LKSLEVLNLGDNNLTDAGA  238 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcc-cCCCCEEecCCCcCchHHH
Confidence            444555666666666665522110   12334456777777766665332    223333 5667777777766653211


Q ss_pred             cCC----CCCCCCCcEEEccCCccccc--hhHHHHHhhcCCCCcEEEccCCcCCCccc
Q 045865          168 GQG----FPHFKSLEHFDMRFARIALN--TSFLQIIGESMPSLKYLLLSYSTLGTNSS  219 (225)
Q Consensus       168 ~~~----~~~~~~L~~l~l~~n~i~~~--~~~~~~l~~~~~~L~~L~l~~n~l~~~~~  219 (225)
                      ...    ....+.|+.+++++|.+...  ..+...+.. +++|+.+++++|.+++...
T Consensus       239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~-~~~L~~l~l~~N~l~~~~~  295 (319)
T cd00116         239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAE-KESLLELDLRGNKFGEEGA  295 (319)
T ss_pred             HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhc-CCCccEEECCCCCCcHHHH
Confidence            101    11235677777777754321  234445555 6677777777777775543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.65  E-value=1.1e-17  Score=137.98  Aligned_cols=174  Identities=23%  Similarity=0.328  Sum_probs=100.4

Q ss_pred             eeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCE
Q 045865           25 LDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRS  104 (225)
Q Consensus        25 l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~  104 (225)
                      |+|++|++.    .++.+.|.++..|-.|++++|++.. .|+    .+..+.+|++|.|++|.+.......+..+.+|+.
T Consensus       131 LNLS~N~Ie----tIPn~lfinLtDLLfLDLS~NrLe~-LPP----Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~v  201 (1255)
T KOG0444|consen  131 LNLSYNNIE----TIPNSLFINLTDLLFLDLSNNRLEM-LPP----QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSV  201 (1255)
T ss_pred             EEcccCccc----cCCchHHHhhHhHhhhccccchhhh-cCH----HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhh
Confidence            455555554    4555566666666666666666655 444    3566667777777777665444444444455555


Q ss_pred             EEcCCCCCC-CccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEcc
Q 045865          105 LNLLWNRLE-GSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMR  183 (225)
Q Consensus       105 L~l~~n~~~-~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~  183 (225)
                      |.++++.-+ ..+|. .+..+.+|..++++.|.+. ..|..++. +++|+.|++++|.|+ .... ..+.+.+|++|++|
T Consensus       202 Lhms~TqRTl~N~Pt-sld~l~NL~dvDlS~N~Lp-~vPecly~-l~~LrrLNLS~N~it-eL~~-~~~~W~~lEtLNlS  276 (1255)
T KOG0444|consen  202 LHMSNTQRTLDNIPT-SLDDLHNLRDVDLSENNLP-IVPECLYK-LRNLRRLNLSGNKIT-ELNM-TEGEWENLETLNLS  276 (1255)
T ss_pred             hhcccccchhhcCCC-chhhhhhhhhccccccCCC-cchHHHhh-hhhhheeccCcCcee-eeec-cHHHHhhhhhhccc
Confidence            555554322 23444 5555666666666666654 45666666 777777777777766 3222 34455566666666


Q ss_pred             CCccccchhHHHHHhhcCCCCcEEEccCCcCCC
Q 045865          184 FARIALNTSFLQIIGESMPSLKYLLLSYSTLGT  216 (225)
Q Consensus       184 ~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~  216 (225)
                      .|.+   ..+|.++.+ +++|+.|++.+|+++.
T Consensus       277 rNQL---t~LP~avcK-L~kL~kLy~n~NkL~F  305 (1255)
T KOG0444|consen  277 RNQL---TVLPDAVCK-LTKLTKLYANNNKLTF  305 (1255)
T ss_pred             cchh---ccchHHHhh-hHHHHHHHhccCcccc
Confidence            6633   345555665 6666666666665543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.62  E-value=9.6e-17  Score=125.55  Aligned_cols=190  Identities=19%  Similarity=0.273  Sum_probs=137.3

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCC-CCCChhhHH---
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSG-NSFNNSILS---   94 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~---   94 (225)
                      +...+++.|..|++.    .+++.+|..+++|++|++++|.|....|.    +|.+++.+..|.+.+ |.|+.....   
T Consensus        66 P~~tveirLdqN~I~----~iP~~aF~~l~~LRrLdLS~N~Is~I~p~----AF~GL~~l~~Lvlyg~NkI~~l~k~~F~  137 (498)
T KOG4237|consen   66 PPETVEIRLDQNQIS----SIPPGAFKTLHRLRRLDLSKNNISFIAPD----AFKGLASLLSLVLYGNNKITDLPKGAFG  137 (498)
T ss_pred             CCcceEEEeccCCcc----cCChhhccchhhhceecccccchhhcChH----hhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence            456788999999998    89999999999999999999999998787    688888887777766 777653333   


Q ss_pred             ---------------------hhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCc------H--------
Q 045865           95 ---------------------SLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLH------I--------  139 (225)
Q Consensus        95 ---------------------~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~------~--------  139 (225)
                                           .|..++++..|.+.+|.+. .++...++.+..++.+.+..|.+-      +        
T Consensus       138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~  216 (498)
T KOG4237|consen  138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN  216 (498)
T ss_pred             hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence                                 3444556666666666665 333334555555555555444310      0        


Q ss_pred             -----------------------------------------------HHH-HHHHhhCCCCCEEeccccccccccccCCC
Q 045865          140 -----------------------------------------------SLL-QSIASIFPSLKNLSMSFCEVNGVVRGQGF  171 (225)
Q Consensus       140 -----------------------------------------------~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  171 (225)
                                                                     ..| ..+.. +++|+.|++++|.++..... +|
T Consensus       217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~-L~~L~~lnlsnN~i~~i~~~-aF  294 (498)
T KOG4237|consen  217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKK-LPNLRKLNLSNNKITRIEDG-AF  294 (498)
T ss_pred             hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhh-cccceEeccCCCccchhhhh-hh
Confidence                                                           003 33455 89999999999999855445 89


Q ss_pred             CCCCCCcEEEccCCccccchhHH-HHHhhcCCCCcEEEccCCcCCCccchhhc
Q 045865          172 PHFKSLEHFDMRFARIALNTSFL-QIIGESMPSLKYLLLSYSTLGTNSSRILH  223 (225)
Q Consensus       172 ~~~~~L~~l~l~~n~i~~~~~~~-~~l~~~~~~L~~L~l~~n~l~~~~~~~~~  223 (225)
                      .....++.|.+..|+|   ..+. ..+.. ++.|++|+|++|+|+...|..|-
T Consensus       295 e~~a~l~eL~L~~N~l---~~v~~~~f~~-ls~L~tL~L~~N~it~~~~~aF~  343 (498)
T KOG4237|consen  295 EGAAELQELYLTRNKL---EFVSSGMFQG-LSGLKTLSLYDNQITTVAPGAFQ  343 (498)
T ss_pred             cchhhhhhhhcCcchH---HHHHHHhhhc-cccceeeeecCCeeEEEeccccc
Confidence            9999999999999966   2333 34444 99999999999999987776553

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.60  E-value=1.3e-14  Score=115.69  Aligned_cols=191  Identities=22%  Similarity=0.195  Sum_probs=125.7

Q ss_pred             CceEEeeccccccc--cchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcC---CCCCEEECCCCCCCh----
Q 045865           20 GRVIALDLSYIYSG--EYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRL---NNLKMLNLSGNSFNN----   90 (225)
Q Consensus        20 ~~v~~l~l~~~~~~--~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l---~~L~~L~l~~~~l~~----   90 (225)
                      ..+++++++++.+.  ...+...+..+..+++|+.|++++|.+....+.    .+..+   ++|++|++++|.+..    
T Consensus        51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~~~~L~~L~ls~~~~~~~~~~  126 (319)
T cd00116          51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG----VLESLLRSSSLQELKLNNNGLGDRGLR  126 (319)
T ss_pred             CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH----HHHHHhccCcccEEEeeCCccchHHHH
Confidence            34778888887766  344555566777788888888888887654443    23333   458888888888863    


Q ss_pred             hhHHhhhcC-CCCCEEEcCCCCCCCccch---hhhccCCCCceeecCCCCCcHHH----HHHHHhhCCCCCEEecccccc
Q 045865           91 SILSSLTHL-SSLRSLNLLWNRLEGSIDV---KELHNFTNLEYLTLESSSLHISL----LQSIASIFPSLKNLSMSFCEV  162 (225)
Q Consensus        91 ~~~~~l~~l-~~L~~L~l~~n~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~  162 (225)
                      .....+..+ ++|+.+++++|.+.+....   ..+..+.+|+.|++.+|.+.+..    +..+.. +++|+.|++++|.+
T Consensus       127 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~i  205 (319)
T cd00116         127 LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKA-NCNLEVLDLNNNGL  205 (319)
T ss_pred             HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHh-CCCCCEEeccCCcc
Confidence            223345556 7888899888887632111   14455667888899888877432    233444 56899999988887


Q ss_pred             cccccc---CCCCCCCCCcEEEccCCccccchhHHHHHhhc----CCCCcEEEccCCcCCCc
Q 045865          163 NGVVRG---QGFPHFKSLEHFDMRFARIALNTSFLQIIGES----MPSLKYLLLSYSTLGTN  217 (225)
Q Consensus       163 ~~~~~~---~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~----~~~L~~L~l~~n~l~~~  217 (225)
                      ++....   ..+..+++|++|++++|++  .+.....+...    .+.|+.|++++|.+++.
T Consensus       206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~l--~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~  265 (319)
T cd00116         206 TDEGASALAETLASLKSLEVLNLGDNNL--TDAGAAALASALLSPNISLLTLSLSCNDITDD  265 (319)
T ss_pred             ChHHHHHHHHHhcccCCCCEEecCCCcC--chHHHHHHHHHHhccCCCceEEEccCCCCCcH
Confidence            633211   1466778899999999854  33223333321    36889999999988743

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.60  E-value=1.3e-16  Score=131.84  Aligned_cols=178  Identities=22%  Similarity=0.225  Sum_probs=96.9

Q ss_pred             eEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCC
Q 045865           22 VIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS  101 (225)
Q Consensus        22 v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~  101 (225)
                      ++.+++..|++...   -++..+.++..|+.|+++.|.+.. .|.    .+...+++-.|+|++|.|..+.-.-+.++..
T Consensus        80 LRsv~~R~N~LKns---GiP~diF~l~dLt~lDLShNqL~E-vP~----~LE~AKn~iVLNLS~N~IetIPn~lfinLtD  151 (1255)
T KOG0444|consen   80 LRSVIVRDNNLKNS---GIPTDIFRLKDLTILDLSHNQLRE-VPT----NLEYAKNSIVLNLSYNNIETIPNSLFINLTD  151 (1255)
T ss_pred             hHHHhhhccccccC---CCCchhcccccceeeecchhhhhh-cch----hhhhhcCcEEEEcccCccccCCchHHHhhHh
Confidence            34445555554432   123344556666666666666655 444    3555566666666666666544444455666


Q ss_pred             CCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccc-cccccCCCCCCCCCcEE
Q 045865          102 LRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN-GVVRGQGFPHFKSLEHF  180 (225)
Q Consensus       102 L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~l  180 (225)
                      |-.|+++.|++. .+|+ .+.++..|++|.|++|.+.......+.. +.+|..|++++..-+ .-+|. .+..+.+|..+
T Consensus       152 LLfLDLS~NrLe-~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQLPs-mtsL~vLhms~TqRTl~N~Pt-sld~l~NL~dv  227 (1255)
T KOG0444|consen  152 LLFLDLSNNRLE-MLPP-QIRRLSMLQTLKLSNNPLNHFQLRQLPS-MTSLSVLHMSNTQRTLDNIPT-SLDDLHNLRDV  227 (1255)
T ss_pred             Hhhhccccchhh-hcCH-HHHHHhhhhhhhcCCChhhHHHHhcCcc-chhhhhhhcccccchhhcCCC-chhhhhhhhhc
Confidence            666666666665 5555 6666666666666666654333333333 445555555544322 12222 44455555666


Q ss_pred             EccCCccccchhHHHHHhhcCCCCcEEEccCCcCC
Q 045865          181 DMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLG  215 (225)
Q Consensus       181 ~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~  215 (225)
                      |+|.|.+   ..+|..+.+ +++|++|+|++|.|+
T Consensus       228 DlS~N~L---p~vPecly~-l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  228 DLSENNL---PIVPECLYK-LRNLRRLNLSGNKIT  258 (1255)
T ss_pred             cccccCC---CcchHHHhh-hhhhheeccCcCcee
Confidence            6666543   344555555 555666666655554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.50  E-value=9e-14  Score=107.41  Aligned_cols=198  Identities=20%  Similarity=0.199  Sum_probs=107.0

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCC----------------------------------CCccEEEccCCcccCcc
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPF----------------------------------QQLESLDLTQNKIAGCV   64 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l----------------------------------~~L~~L~l~~n~i~~~~   64 (225)
                      ...++.++|++|.++.++....+..+.+.                                  ++|++|++++|-+....
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            45678888888888765545555544444                                  45555555555554444


Q ss_pred             hhhHHHHHhcCCCCCEEECCCCCCChhhHHh-------------hhcCCCCCEEEcCCCCCCCccc---hhhhccCCCCc
Q 045865           65 ENEGIERLSRLNNLKMLNLSGNSFNNSILSS-------------LTHLSSLRSLNLLWNRLEGSID---VKELHNFTNLE  128 (225)
Q Consensus        65 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~-------------l~~l~~L~~L~l~~n~~~~~~~---~~~~~~l~~L~  128 (225)
                      +..+.+.+..+..|++|.+.+|.+.......             ...-+.|+++...+|++...-.   ...++..+.|+
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le  188 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE  188 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence            4433334444555555555555543211111             1123456666666665542110   01445556666


Q ss_pred             eeecCCCCCcH----HHHHHHHhhCCCCCEEeccccccccc----cccCCCCCCCCCcEEEccCCccccch--hHHHHHh
Q 045865          129 YLTLESSSLHI----SLLQSIASIFPSLKNLSMSFCEVNGV----VRGQGFPHFKSLEHFDMRFARIALNT--SFLQIIG  198 (225)
Q Consensus       129 ~l~l~~~~~~~----~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~l~l~~n~i~~~~--~~~~~l~  198 (225)
                      .+.+..|+|..    .....+.+ +++|+.|++.+|.++..    +.. .++.+++|+.+++++|.+...+  .+.+++.
T Consensus       189 evr~~qN~I~~eG~~al~eal~~-~~~LevLdl~DNtft~egs~~Lak-aL~s~~~L~El~l~dcll~~~Ga~a~~~al~  266 (382)
T KOG1909|consen  189 EVRLSQNGIRPEGVTALAEALEH-CPHLEVLDLRDNTFTLEGSVALAK-ALSSWPHLRELNLGDCLLENEGAIAFVDALK  266 (382)
T ss_pred             eEEEecccccCchhHHHHHHHHh-CCcceeeecccchhhhHHHHHHHH-HhcccchheeecccccccccccHHHHHHHHh
Confidence            66666666541    12344555 77777777777766522    112 4556666777777776554433  3455555


Q ss_pred             hcCCCCcEEEccCCcCCCcc
Q 045865          199 ESMPSLKYLLLSYSTLGTNS  218 (225)
Q Consensus       199 ~~~~~L~~L~l~~n~l~~~~  218 (225)
                      ...|.|+++.+.+|.++...
T Consensus       267 ~~~p~L~vl~l~gNeIt~da  286 (382)
T KOG1909|consen  267 ESAPSLEVLELAGNEITRDA  286 (382)
T ss_pred             ccCCCCceeccCcchhHHHH
Confidence            55667777777777665443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.48  E-value=2.1e-15  Score=118.59  Aligned_cols=186  Identities=23%  Similarity=0.335  Sum_probs=139.6

Q ss_pred             ceEEeeccccccccchhHHhhhhhcCCC--CccEEEccCCcccCcchhhHHHHHhcCCCCCE-EECCCCCCChhhHHhhh
Q 045865           21 RVIALDLSYIYSGEYSWYLNASLFTPFQ--QLESLDLTQNKIAGCVENEGIERLSRLNNLKM-LNLSGNSFNNSILSSLT   97 (225)
Q Consensus        21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~--~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~-L~l~~~~l~~~~~~~l~   97 (225)
                      +.++|++++-++.    .++.+.|+.-+  -++.++++.|.+.+ .|.    .+..+..+.+ +.+++|.+. ..|..++
T Consensus       363 ~tkiL~~s~~qlt----~VPdEVfea~~~~~Vt~VnfskNqL~e-lPk----~L~~lkelvT~l~lsnn~is-fv~~~l~  432 (565)
T KOG0472|consen  363 TTKILDVSDKQLT----LVPDEVFEAAKSEIVTSVNFSKNQLCE-LPK----RLVELKELVTDLVLSNNKIS-FVPLELS  432 (565)
T ss_pred             hhhhhcccccccc----cCCHHHHHHhhhcceEEEecccchHhh-hhh----hhHHHHHHHHHHHhhcCccc-cchHHHH
Confidence            4566777777776    55666655443  26678888888776 554    3333333333 344555544 4788888


Q ss_pred             cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCC
Q 045865           98 HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSL  177 (225)
Q Consensus        98 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L  177 (225)
                      .+++|..|++++|.+. .+|. .+..+-.|+.++++.|++. ..|..+.. ..-++.+-.+.|.+. ..+.+.+.++.+|
T Consensus       433 ~l~kLt~L~L~NN~Ln-~LP~-e~~~lv~Lq~LnlS~NrFr-~lP~~~y~-lq~lEtllas~nqi~-~vd~~~l~nm~nL  507 (565)
T KOG0472|consen  433 QLQKLTFLDLSNNLLN-DLPE-EMGSLVRLQTLNLSFNRFR-MLPECLYE-LQTLETLLASNNQIG-SVDPSGLKNMRNL  507 (565)
T ss_pred             hhhcceeeecccchhh-hcch-hhhhhhhhheecccccccc-cchHHHhh-HHHHHHHHhcccccc-ccChHHhhhhhhc
Confidence            9999999999999987 8887 7778888999999999886 67777776 666777766777776 5555478999999


Q ss_pred             cEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhhccC
Q 045865          178 EHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRILHQG  225 (225)
Q Consensus       178 ~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~~~~  225 (225)
                      .++|+..|.+   ..+|+.+++ |.+|+.|.+.+|+|.-+...++.+|
T Consensus       508 ~tLDL~nNdl---q~IPp~Lgn-mtnL~hLeL~gNpfr~Pr~~iLmkg  551 (565)
T KOG0472|consen  508 TTLDLQNNDL---QQIPPILGN-MTNLRHLELDGNPFRQPRHQILMKG  551 (565)
T ss_pred             ceeccCCCch---hhCChhhcc-ccceeEEEecCCccCCCHHHHhccC
Confidence            9999999966   678999999 9999999999999996666666554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.45  E-value=2.9e-16  Score=123.27  Aligned_cols=129  Identities=24%  Similarity=0.295  Sum_probs=57.9

Q ss_pred             CCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCE
Q 045865           75 LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKN  154 (225)
Q Consensus        75 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~  154 (225)
                      ++.|++||...|-++. +|..++.+.+|+-|++.+|++. .+|  .|..+..|+.++++.|.+. .+|.....+++++..
T Consensus       182 m~~L~~ld~~~N~L~t-lP~~lg~l~~L~~LyL~~Nki~-~lP--ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~v  256 (565)
T KOG0472|consen  182 MKRLKHLDCNSNLLET-LPPELGGLESLELLYLRRNKIR-FLP--EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLV  256 (565)
T ss_pred             HHHHHhcccchhhhhc-CChhhcchhhhHHHHhhhcccc-cCC--CCCccHHHHHHHhcccHHH-hhHHHHhccccccee
Confidence            4444444444443332 3444444444444444444443 333  3444444444444444443 333333322445555


Q ss_pred             EeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCC
Q 045865          155 LSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLG  215 (225)
Q Consensus       155 L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~  215 (225)
                      |++.+|.++ +.|+ .+.-+++|+++|+++|.|   +.+|-.++. + +|+.|-+.||++.
T Consensus       257 LDLRdNklk-e~Pd-e~clLrsL~rLDlSNN~i---s~Lp~sLgn-l-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  257 LDLRDNKLK-EVPD-EICLLRSLERLDLSNNDI---SSLPYSLGN-L-HLKFLALEGNPLR  310 (565)
T ss_pred             eeccccccc-cCch-HHHHhhhhhhhcccCCcc---ccCCccccc-c-eeeehhhcCCchH
Confidence            555555544 4444 444445555555555533   334444444 4 4555555555443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.41  E-value=1.1e-14  Score=114.09  Aligned_cols=187  Identities=21%  Similarity=0.243  Sum_probs=130.1

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEcc-CCcccCcchhhHH---------------------HHHhcCC
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLT-QNKIAGCVENEGI---------------------ERLSRLN   76 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~-~n~i~~~~~~~~~---------------------~~~~~l~   76 (225)
                      -.++++|||++|++.    .+.+.+|.+++.+.+|-+- +|+|.. ++...|                     +.|..++
T Consensus        90 l~~LRrLdLS~N~Is----~I~p~AF~GL~~l~~Lvlyg~NkI~~-l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~  164 (498)
T KOG4237|consen   90 LHRLRRLDLSKNNIS----FIAPDAFKGLASLLSLVLYGNNKITD-LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLP  164 (498)
T ss_pred             hhhhceecccccchh----hcChHhhhhhHhhhHHHhhcCCchhh-hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhh
Confidence            357899999999987    6777777888777665544 366665 333222                     3567778


Q ss_pred             CCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCC-------------------------------------------
Q 045865           77 NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLE-------------------------------------------  113 (225)
Q Consensus        77 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~-------------------------------------------  113 (225)
                      +++.|.+.+|.+....-..+..+..++.+.+..|.+-                                           
T Consensus       165 ~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf  244 (498)
T KOG4237|consen  165 SLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKF  244 (498)
T ss_pred             hcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhh
Confidence            8888888888765533335555555666555555411                                           


Q ss_pred             ------------------CccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCC
Q 045865          114 ------------------GSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFK  175 (225)
Q Consensus       114 ------------------~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  175 (225)
                                        ...|...|..+++|+.|++++|.++..-..++.. ...+++|.+..|.+...... .|.++.
T Consensus       245 ~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~-~a~l~eL~L~~N~l~~v~~~-~f~~ls  322 (498)
T KOG4237|consen  245 LCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG-AAELQELYLTRNKLEFVSSG-MFQGLS  322 (498)
T ss_pred             hhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc-hhhhhhhhcCcchHHHHHHH-hhhccc
Confidence                              0111134566889999999999998665566665 88899999999988744344 888899


Q ss_pred             CCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCC
Q 045865          176 SLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLG  215 (225)
Q Consensus       176 ~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~  215 (225)
                      +|+.|++.+|+|  +...|.+|.. +..|.+|++-+|++-
T Consensus       323 ~L~tL~L~~N~i--t~~~~~aF~~-~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  323 GLKTLSLYDNQI--TTVAPGAFQT-LFSLSTLNLLSNPFN  359 (498)
T ss_pred             cceeeeecCCee--EEEecccccc-cceeeeeehccCccc
Confidence            999999999955  4444666666 888889988888763

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.40  E-value=3.4e-14  Score=121.69  Aligned_cols=130  Identities=25%  Similarity=0.390  Sum_probs=93.8

Q ss_pred             CCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCE
Q 045865           75 LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKN  154 (225)
Q Consensus        75 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~  154 (225)
                      ++.|+.|.+.+|.+++.....+..+..|+.|+++.|++. .+|...+.++..|+.|+|++|++. .+|..+.. ++.|+.
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~-~~~L~t  434 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVAN-LGRLHT  434 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHh-hhhhHH
Confidence            446677777788887777777777888888888888886 666667778888888888888876 56677777 788888


Q ss_pred             EeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCc
Q 045865          155 LSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYST  213 (225)
Q Consensus       155 L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~  213 (225)
                      |....|.+. ..|  .+..++.|+.+|+++|+++. ..++... . -++|+.||++||.
T Consensus       435 L~ahsN~l~-~fP--e~~~l~qL~~lDlS~N~L~~-~~l~~~~-p-~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  435 LRAHSNQLL-SFP--ELAQLPQLKVLDLSCNNLSE-VTLPEAL-P-SPNLKYLDLSGNT  487 (1081)
T ss_pred             HhhcCCcee-ech--hhhhcCcceEEecccchhhh-hhhhhhC-C-CcccceeeccCCc
Confidence            888888776 555  37778888888888885421 1223322 2 3678888888885

>PLN03210 Resistant to P

Probab=99.35  E-value=8.8e-12  Score=114.47  Aligned_cols=127  Identities=20%  Similarity=0.159  Sum_probs=81.5

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL   99 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l   99 (225)
                      ..+++|+++++.+.    .+.. .+..+++|+.|+++++......|.     +..+++|++|++.+|.....+|..+..+
T Consensus       611 ~~L~~L~L~~s~l~----~L~~-~~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~L  680 (1153)
T PLN03210        611 ENLVKLQMQGSKLE----KLWD-GVHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQYL  680 (1153)
T ss_pred             cCCcEEECcCcccc----cccc-ccccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhcc
Confidence            46677777777665    3322 346678888888887654443554     6778888888888877666677888888


Q ss_pred             CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEecccccc
Q 045865          100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEV  162 (225)
Q Consensus       100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~  162 (225)
                      ++|+.|++.+|.....+|. .+ .+.+|+.|++.+|.....+|..    ..+|+.|++.+|.+
T Consensus       681 ~~L~~L~L~~c~~L~~Lp~-~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i  737 (1153)
T PLN03210        681 NKLEDLDMSRCENLEILPT-GI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAI  737 (1153)
T ss_pred             CCCCEEeCCCCCCcCccCC-cC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCcc
Confidence            8888888888754446664 32 5667777777766433222211    23455555555544

syringae 6; Provisional

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.35  E-value=2.5e-14  Score=116.87  Aligned_cols=181  Identities=24%  Similarity=0.300  Sum_probs=143.5

Q ss_pred             eEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCC
Q 045865           22 VIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS  101 (225)
Q Consensus        22 v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~  101 (225)
                      ...+|++-|++.+     .+..+..+-.|+.+.+..|.|.. +|.    .++.+..|..++|+.|++.. +|..+..++ 
T Consensus        77 t~~aDlsrNR~~e-----lp~~~~~f~~Le~liLy~n~~r~-ip~----~i~~L~~lt~l~ls~NqlS~-lp~~lC~lp-  144 (722)
T KOG0532|consen   77 TVFADLSRNRFSE-----LPEEACAFVSLESLILYHNCIRT-IPE----AICNLEALTFLDLSSNQLSH-LPDGLCDLP-  144 (722)
T ss_pred             hhhhhcccccccc-----CchHHHHHHHHHHHHHHhcccee-cch----hhhhhhHHHHhhhccchhhc-CChhhhcCc-
Confidence            4557788887753     23334445567777888888776 555    57888899999999998876 566666664 


Q ss_pred             CCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEE
Q 045865          102 LRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFD  181 (225)
Q Consensus       102 L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~  181 (225)
                      |+.|-+++|++. .+|. .+....+|..++.+.|.+. ..+..+++ +.+|+.|.+..|... ..|. .+..++ |..||
T Consensus       145 Lkvli~sNNkl~-~lp~-~ig~~~tl~~ld~s~nei~-slpsql~~-l~slr~l~vrRn~l~-~lp~-El~~Lp-Li~lD  217 (722)
T KOG0532|consen  145 LKVLIVSNNKLT-SLPE-EIGLLPTLAHLDVSKNEIQ-SLPSQLGY-LTSLRDLNVRRNHLE-DLPE-ELCSLP-LIRLD  217 (722)
T ss_pred             ceeEEEecCccc-cCCc-ccccchhHHHhhhhhhhhh-hchHHhhh-HHHHHHHHHhhhhhh-hCCH-HHhCCc-eeeee
Confidence            889999999987 7776 6667788999999999986 56777777 899999999999887 5566 556444 99999


Q ss_pred             ccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhhccC
Q 045865          182 MRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRILHQG  225 (225)
Q Consensus       182 l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~~~~  225 (225)
                      +++|+|   ..+|..+.+ |++|++|-|.+|.|+.+++.++-+|
T Consensus       218 fScNki---s~iPv~fr~-m~~Lq~l~LenNPLqSPPAqIC~kG  257 (722)
T KOG0532|consen  218 FSCNKI---SYLPVDFRK-MRHLQVLQLENNPLQSPPAQICEKG  257 (722)
T ss_pred             cccCce---eecchhhhh-hhhheeeeeccCCCCCChHHHHhcc
Confidence            999987   678999999 9999999999999998888887665

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.34  E-value=4.5e-14  Score=120.92  Aligned_cols=184  Identities=27%  Similarity=0.330  Sum_probs=114.6

Q ss_pred             CcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhh
Q 045865           18 TTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT   97 (225)
Q Consensus        18 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~   97 (225)
                      .+..++.++++.+++.    .++ .-+..+..|+.+....|.+.. .|.    ++....+|+.|....|.+.. +|....
T Consensus       239 ~p~nl~~~dis~n~l~----~lp-~wi~~~~nle~l~~n~N~l~~-lp~----ri~~~~~L~~l~~~~nel~y-ip~~le  307 (1081)
T KOG0618|consen  239 VPLNLQYLDISHNNLS----NLP-EWIGACANLEALNANHNRLVA-LPL----RISRITSLVSLSAAYNELEY-IPPFLE  307 (1081)
T ss_pred             ccccceeeecchhhhh----cch-HHHHhcccceEecccchhHHh-hHH----HHhhhhhHHHHHhhhhhhhh-CCCccc
Confidence            3456777777777775    344 666777777777777777743 444    34555566666666655554 344555


Q ss_pred             cCCCCCEEEcCCCCCCCccchhhh-------------------------ccCCCCceeecCCCCCcHHHHHHHHhhCCCC
Q 045865           98 HLSSLRSLNLLWNRLEGSIDVKEL-------------------------HNFTNLEYLTLESSSLHISLLQSIASIFPSL  152 (225)
Q Consensus        98 ~l~~L~~L~l~~n~~~~~~~~~~~-------------------------~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L  152 (225)
                      ++..|++|++..|.+. .+|...+                         ..+..|+.|++.+|.+++.....+-. +++|
T Consensus       308 ~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~-~~hL  385 (1081)
T KOG0618|consen  308 GLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN-FKHL  385 (1081)
T ss_pred             ccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc-ccce
Confidence            5666777777777664 4333111                         11234566677777776555555555 7778


Q ss_pred             CEEeccccccccccccCCCCCCCCCcEEEccCCccccc--------------------hhHHHHHhhcCCCCcEEEccCC
Q 045865          153 KNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALN--------------------TSFLQIIGESMPSLKYLLLSYS  212 (225)
Q Consensus       153 ~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~--------------------~~~~~~l~~~~~~L~~L~l~~n  212 (225)
                      +.|++++|++. .+|...+.++..|+.|++|+|+++..                    ..+| .+.+ ++.|+++|++.|
T Consensus       386 KVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~-l~qL~~lDlS~N  462 (1081)
T KOG0618|consen  386 KVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQ-LPQLKVLDLSCN  462 (1081)
T ss_pred             eeeeecccccc-cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhh-cCcceEEecccc
Confidence            88888888776 55655777777788888888865211                    1244 4556 677777777777


Q ss_pred             cCCCc
Q 045865          213 TLGTN  217 (225)
Q Consensus       213 ~l~~~  217 (225)
                      .|+..
T Consensus       463 ~L~~~  467 (1081)
T KOG0618|consen  463 NLSEV  467 (1081)
T ss_pred             hhhhh
Confidence            77643

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.33  E-value=3e-12  Score=99.14  Aligned_cols=195  Identities=19%  Similarity=0.234  Sum_probs=144.3

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhH---------HHHHhcCCCCCEEECCCCCCC
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEG---------IERLSRLNNLKMLNLSGNSFN   89 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~---------~~~~~~l~~L~~L~l~~~~l~   89 (225)
                      +++++.++||.|-++..+..-....+.++..|+.|.+.+|.+.......+         .+....-+.||++...+|.+.
T Consensus        91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen   91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE  170 (382)
T ss_pred             CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence            45899999999999875555555677788999999999998864322211         112345679999999999885


Q ss_pred             h----hhHHhhhcCCCCCEEEcCCCCCCCc---cchhhhccCCCCceeecCCCCCcHH----HHHHHHhhCCCCCEEecc
Q 045865           90 N----SILSSLTHLSSLRSLNLLWNRLEGS---IDVKELHNFTNLEYLTLESSSLHIS----LLQSIASIFPSLKNLSMS  158 (225)
Q Consensus        90 ~----~~~~~l~~l~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~~L~~L~l~  158 (225)
                      .    .....+..++.|+.+.++.|.+...   .....+..+++|+.|+|.+|.++..    +...+.. |++|+.++++
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s-~~~L~El~l~  249 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSS-WPHLRELNLG  249 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcc-cchheeeccc
Confidence            3    3456777889999999999988632   1223677889999999999998733    3455666 8899999999


Q ss_pred             cccccccccc----CCCCCCCCCcEEEccCCccccch--hHHHHHhhcCCCCcEEEccCCcCC
Q 045865          159 FCEVNGVVRG----QGFPHFKSLEHFDMRFARIALNT--SFLQIIGESMPSLKYLLLSYSTLG  215 (225)
Q Consensus       159 ~n~~~~~~~~----~~~~~~~~L~~l~l~~n~i~~~~--~~~~~l~~~~~~L~~L~l~~n~l~  215 (225)
                      +|.+...-..    ..-...++|+.+.+.+|.|....  .+...+.. .+.|..|+|++|++.
T Consensus       250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRLG  311 (382)
T ss_pred             ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCccccc
Confidence            9998643322    11224689999999999764433  23445666 899999999999993

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.31  E-value=4.4e-12  Score=91.49  Aligned_cols=130  Identities=22%  Similarity=0.321  Sum_probs=45.5

Q ss_pred             hcCCCCCEEECCCCCCChhhHHhhh-cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCC
Q 045865           73 SRLNNLKMLNLSGNSFNNSILSSLT-HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPS  151 (225)
Q Consensus        73 ~~l~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~  151 (225)
                      .....+++|++.+|.|+..  +.+. .+.+|+.|++++|.+. .+.  .+..++.|+.|++++|.+... ...+...+++
T Consensus        16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~   89 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPN   89 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred             ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCCcc-ccchHHhCCc
Confidence            3445667777777777542  2343 4567777888888776 444  566677888888888887643 2233222788


Q ss_pred             CCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhH-HHHHhhcCCCCcEEEc
Q 045865          152 LKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSF-LQIIGESMPSLKYLLL  209 (225)
Q Consensus       152 L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~-~~~l~~~~~~L~~L~l  209 (225)
                      |++|++++|.|........+..+++|+.|++.+|++...... .-.+.. +|+|+.||-
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~-lP~Lk~LD~  147 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYK-LPSLKVLDG  147 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH--TT-SEETT
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHH-cChhheeCC
Confidence            888888888876432223566788888888888876433332 233555 888888753

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.30  E-value=1.9e-11  Score=106.54  Aligned_cols=165  Identities=21%  Similarity=0.309  Sum_probs=86.0

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL   99 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l   99 (225)
                      ..++.|++++|.+.    .++...+   ++|++|++++|.+.. +|.    .+  ..+|+.|++++|.+.. +|..+.  
T Consensus       199 ~~L~~L~Ls~N~Lt----sLP~~l~---~nL~~L~Ls~N~Lts-LP~----~l--~~~L~~L~Ls~N~L~~-LP~~l~--  261 (754)
T PRK15370        199 EQITTLILDNNELK----SLPENLQ---GNIKTLYANSNQLTS-IPA----TL--PDTIQEMELSINRITE-LPERLP--  261 (754)
T ss_pred             cCCcEEEecCCCCC----cCChhhc---cCCCEEECCCCcccc-CCh----hh--hccccEEECcCCccCc-CChhHh--
Confidence            45677777777776    4444332   356777777776664 343    12  2356666666666553 333332  


Q ss_pred             CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHH------------------hhCCCCCEEeccccc
Q 045865          100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIA------------------SIFPSLKNLSMSFCE  161 (225)
Q Consensus       100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~------------------~~~~~L~~L~l~~n~  161 (225)
                      .+|+.|+++.|.+. .+|. .+  ..+|+.|++++|.+.. +|..+.                  ...++|+.|++++|.
T Consensus       262 s~L~~L~Ls~N~L~-~LP~-~l--~~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~  336 (754)
T PRK15370        262 SALQSLDLFHNKIS-CLPE-NL--PEELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA  336 (754)
T ss_pred             CCCCEEECcCCccC-cccc-cc--CCCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCc
Confidence            34566666665554 3332 12  1245555555554431 111000                  002456666666666


Q ss_pred             cccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCC
Q 045865          162 VNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGT  216 (225)
Q Consensus       162 ~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~  216 (225)
                      ++ .+|. .+  .++|+.|++++|++   ..+|..+   .++|+.|+|++|.|+.
T Consensus       337 Lt-~LP~-~l--~~sL~~L~Ls~N~L---~~LP~~l---p~~L~~LdLs~N~Lt~  381 (754)
T PRK15370        337 LT-SLPA-SL--PPELQVLDVSKNQI---TVLPETL---PPTITTLDVSRNALTN  381 (754)
T ss_pred             cc-cCCh-hh--cCcccEEECCCCCC---CcCChhh---cCCcCEEECCCCcCCC
Confidence            55 2333 22  24677777777754   2344433   3467777777777764

>PLN03210 Resistant to P

Probab=99.29  E-value=2.7e-11  Score=111.33  Aligned_cols=178  Identities=21%  Similarity=0.201  Sum_probs=95.7

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL   99 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l   99 (225)
                      .+++.++++++....   .++  .+..+++|++|++++|......|.    .+..+++|+.|++++|.....+|..+ .+
T Consensus       634 ~~Lk~L~Ls~~~~l~---~ip--~ls~l~~Le~L~L~~c~~L~~lp~----si~~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        634 TGLRNIDLRGSKNLK---EIP--DLSMATNLETLKLSDCSSLVELPS----SIQYLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             CCCCEEECCCCCCcC---cCC--ccccCCcccEEEecCCCCccccch----hhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            467777777654321   232  255667777777777654444555    46667777777777654333233322 34


Q ss_pred             CCCCEEEcC---------------------CCCCCCccchh-----------------------------hhccCCCCce
Q 045865          100 SSLRSLNLL---------------------WNRLEGSIDVK-----------------------------ELHNFTNLEY  129 (225)
Q Consensus       100 ~~L~~L~l~---------------------~n~~~~~~~~~-----------------------------~~~~l~~L~~  129 (225)
                      .+|+.|+++                     +|.+. .+|..                             .....++|+.
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~  782 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR  782 (1153)
T ss_pred             CCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence            444444444                     44432 22210                             0001235666


Q ss_pred             eecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccC---------------------Cccc
Q 045865          130 LTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRF---------------------ARIA  188 (225)
Q Consensus       130 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~---------------------n~i~  188 (225)
                      |++++|.....+|..+.. +++|+.|++++|.....+|. .+ ++++|+.|++++                     |.+ 
T Consensus       783 L~Ls~n~~l~~lP~si~~-L~~L~~L~Ls~C~~L~~LP~-~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i-  858 (1153)
T PLN03210        783 LFLSDIPSLVELPSSIQN-LHKLEHLEIENCINLETLPT-GI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGI-  858 (1153)
T ss_pred             eeCCCCCCccccChhhhC-CCCCCEEECCCCCCcCeeCC-CC-CccccCEEECCCCCccccccccccccCEeECCCCCC-
Confidence            667666554456666766 88888888887753334443 22 344444444444                     432 


Q ss_pred             cchhHHHHHhhcCCCCcEEEccCC-cCC
Q 045865          189 LNTSFLQIIGESMPSLKYLLLSYS-TLG  215 (225)
Q Consensus       189 ~~~~~~~~l~~~~~~L~~L~l~~n-~l~  215 (225)
                        ..+|..+.. +++|+.|++.+| .++
T Consensus       859 --~~iP~si~~-l~~L~~L~L~~C~~L~  883 (1153)
T PLN03210        859 --EEVPWWIEK-FSNLSFLDMNGCNNLQ  883 (1153)
T ss_pred             --ccChHHHhc-CCCCCEEECCCCCCcC
Confidence              245555666 666777777663 444

syringae 6; Provisional

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.27  E-value=1.5e-11  Score=88.74  Aligned_cols=127  Identities=28%  Similarity=0.321  Sum_probs=50.3

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL   99 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l   99 (225)
                      -++++|++.++++.    .+.. .-..+.+|+.|++++|.|.. +..     +..++.|++|++++|.++.........+
T Consensus        19 ~~~~~L~L~~n~I~----~Ie~-L~~~l~~L~~L~Ls~N~I~~-l~~-----l~~L~~L~~L~L~~N~I~~i~~~l~~~l   87 (175)
T PF14580_consen   19 VKLRELNLRGNQIS----TIEN-LGATLDKLEVLDLSNNQITK-LEG-----LPGLPRLKTLDLSNNRISSISEGLDKNL   87 (175)
T ss_dssp             ---------------------S---TT-TT--EEE-TTS--S---TT---------TT--EEE--SS---S-CHHHHHH-
T ss_pred             cccccccccccccc----cccc-hhhhhcCCCEEECCCCCCcc-ccC-----ccChhhhhhcccCCCCCCccccchHHhC
Confidence            36788999999886    3322 22357889999999999886 333     6778999999999999987433333468


Q ss_pred             CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHH--HH-HHHHhhCCCCCEEecc
Q 045865          100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHIS--LL-QSIASIFPSLKNLSMS  158 (225)
Q Consensus       100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~--~~-~~~~~~~~~L~~L~l~  158 (225)
                      ++|+.|++++|.+...-....+..+++|+.|++.+|.+...  .. ..+.. +|+|+.|+-.
T Consensus        88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~-lP~Lk~LD~~  148 (175)
T PF14580_consen   88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYK-LPSLKVLDGQ  148 (175)
T ss_dssp             TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH--TT-SEETTE
T ss_pred             CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHH-cChhheeCCE
Confidence            89999999999887333334677788999999999887632  22 33444 8899988753

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.26  E-value=1e-11  Score=108.04  Aligned_cols=151  Identities=21%  Similarity=0.170  Sum_probs=88.3

Q ss_pred             CCccEEEccCCcccCcchhhHH------------HHHhcC-CCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCC
Q 045865           48 QQLESLDLTQNKIAGCVENEGI------------ERLSRL-NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEG  114 (225)
Q Consensus        48 ~~L~~L~l~~n~i~~~~~~~~~------------~~~~~l-~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~  114 (225)
                      +.|+.|++++|.+.. +|....            ..+..+ .+|+.|++++|.+.. +|..   ..+|+.|++++|.+. 
T Consensus       302 ~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-  375 (788)
T PRK15387        302 PGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-  375 (788)
T ss_pred             cccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccCC-CCCC---Ccccceehhhccccc-
Confidence            567788888877765 222000            000000 134444444444433 1211   123444444444443 


Q ss_pred             ccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHH
Q 045865          115 SIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFL  194 (225)
Q Consensus       115 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~  194 (225)
                      .+|.    ...+|+.|++++|.+.. +|.   . .++|+.|++++|.++ .+|. .   ..+|+.|++++|++   ..+|
T Consensus       376 ~LP~----l~~~L~~LdLs~N~Lt~-LP~---l-~s~L~~LdLS~N~Ls-sIP~-l---~~~L~~L~Ls~NqL---t~LP  438 (788)
T PRK15387        376 SLPA----LPSGLKELIVSGNRLTS-LPV---L-PSELKELMVSGNRLT-SLPM-L---PSGLLSLSVYRNQL---TRLP  438 (788)
T ss_pred             cCcc----cccccceEEecCCcccC-CCC---c-ccCCCEEEccCCcCC-CCCc-c---hhhhhhhhhccCcc---cccC
Confidence            2332    12356777777777652 222   1 356777888888776 3443 2   24577888888866   4678


Q ss_pred             HHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865          195 QIIGESMPSLKYLLLSYSTLGTNSSRIL  222 (225)
Q Consensus       195 ~~l~~~~~~L~~L~l~~n~l~~~~~~~~  222 (225)
                      ..+.. +++|+.|++++|+|++..|..+
T Consensus       439 ~sl~~-L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        439 ESLIH-LSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             hHHhh-ccCCCeEECCCCCCCchHHHHH
Confidence            88888 9999999999999999887765

>PLN03150 hypothetical protein; Provisional

Probab=99.25  E-value=4.9e-11  Score=102.96  Aligned_cols=119  Identities=29%  Similarity=0.399  Sum_probs=88.4

Q ss_pred             CCCceeecCCc----CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECC
Q 045865            9 QWERVECSNTT----GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLS   84 (225)
Q Consensus         9 ~~~~~~~~~~~----~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~   84 (225)
                      .|.|+.|....    ..++.|+|+++.+.    ...+..+.++++|+.|++++|.+.+..|.    .+..+++|+.|+++
T Consensus       403 ~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~----g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs  474 (623)
T PLN03150        403 PWSGADCQFDSTKGKWFIDGLGLDNQGLR----GFIPNDISKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLS  474 (623)
T ss_pred             ccccceeeccCCCCceEEEEEECCCCCcc----ccCCHHHhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECC
Confidence            79999996321    24788888888876    33445677888888888888888877776    57888888888888


Q ss_pred             CCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhcc-CCCCceeecCCCC
Q 045865           85 GNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHN-FTNLEYLTLESSS  136 (225)
Q Consensus        85 ~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~-l~~L~~l~l~~~~  136 (225)
                      +|.+.+..|..+..+++|+.|++++|.+.+.+|. .+.. ..++..+++.+|.
T Consensus       475 ~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        475 YNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA-ALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCCCCCCCchHHhcCCCCCEEECcCCcccccCCh-HHhhccccCceEEecCCc
Confidence            8888887888888888888888888888777775 3433 2345566666554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=5e-12  Score=100.53  Aligned_cols=193  Identities=21%  Similarity=0.220  Sum_probs=141.4

Q ss_pred             cCCcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChh-hHH
Q 045865           16 SNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNS-ILS   94 (225)
Q Consensus        16 ~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~   94 (225)
                      .....+++.||++.|-+.  -|....+..+.+++|+.|+++.|.+.-.....   .-..+++|+.|.++.|+++.. +..
T Consensus       142 ~k~~~~v~~LdLS~NL~~--nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~---~~~~l~~lK~L~l~~CGls~k~V~~  216 (505)
T KOG3207|consen  142 SKILPNVRDLDLSRNLFH--NWFPVLKIAEQLPSLENLNLSSNRLSNFISSN---TTLLLSHLKQLVLNSCGLSWKDVQW  216 (505)
T ss_pred             hhhCCcceeecchhhhHH--hHHHHHHHHHhcccchhcccccccccCCcccc---chhhhhhhheEEeccCCCCHHHHHH
Confidence            334568999999999875  35667788899999999999999876433322   234688999999999999753 345


Q ss_pred             hhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHH-HHHHHhhCCCCCEEeccccccccccccCC---
Q 045865           95 SLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISL-LQSIASIFPSLKNLSMSFCEVNGVVRGQG---  170 (225)
Q Consensus        95 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---  170 (225)
                      .+..+|+|+.|++..|........ ....++.|+.|+|++|.+.+.- ...... ++.|+.|+++.+.+...-....   
T Consensus       217 ~~~~fPsl~~L~L~~N~~~~~~~~-~~~i~~~L~~LdLs~N~li~~~~~~~~~~-l~~L~~Lnls~tgi~si~~~d~~s~  294 (505)
T KOG3207|consen  217 ILLTFPSLEVLYLEANEIILIKAT-STKILQTLQELDLSNNNLIDFDQGYKVGT-LPGLNQLNLSSTGIASIAEPDVESL  294 (505)
T ss_pred             HHHhCCcHHHhhhhcccccceecc-hhhhhhHHhhccccCCccccccccccccc-ccchhhhhccccCcchhcCCCccch
Confidence            566789999999999952212111 4445678999999999876332 244555 8999999999998863211111   


Q ss_pred             --CCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCc
Q 045865          171 --FPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTN  217 (225)
Q Consensus       171 --~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~  217 (225)
                        ....++|+.|++..|+|..+.++- .+.. +++|+.|.+..|.|+.+
T Consensus       295 ~kt~~f~kL~~L~i~~N~I~~w~sl~-~l~~-l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  295 DKTHTFPKLEYLNISENNIRDWRSLN-HLRT-LENLKHLRITLNYLNKE  341 (505)
T ss_pred             hhhcccccceeeecccCccccccccc-hhhc-cchhhhhhccccccccc
Confidence              346789999999999875565543 3455 88899999999988754

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.23  E-value=9.6e-12  Score=108.41  Aligned_cols=141  Identities=21%  Similarity=0.263  Sum_probs=67.5

Q ss_pred             ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCC
Q 045865           21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS  100 (225)
Q Consensus        21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~  100 (225)
                      +++.|++++|.+.    .++....   +.|+.|++++|.+.. +|.    .+.  .+|+.|++++|.+.. +|..+.  .
T Consensus       221 nL~~L~Ls~N~Lt----sLP~~l~---~~L~~L~Ls~N~L~~-LP~----~l~--s~L~~L~Ls~N~L~~-LP~~l~--~  283 (754)
T PRK15370        221 NIKTLYANSNQLT----SIPATLP---DTIQEMELSINRITE-LPE----RLP--SALQSLDLFHNKISC-LPENLP--E  283 (754)
T ss_pred             CCCEEECCCCccc----cCChhhh---ccccEEECcCCccCc-CCh----hHh--CCCCEEECcCCccCc-cccccC--C
Confidence            5667777777665    3333221   245556666665553 333    121  345555555555543 233221  2


Q ss_pred             CCCEEEcCCCCCCCccchhh-------------h-----ccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEecccccc
Q 045865          101 SLRSLNLLWNRLEGSIDVKE-------------L-----HNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEV  162 (225)
Q Consensus       101 ~L~~L~l~~n~~~~~~~~~~-------------~-----~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~  162 (225)
                      +|+.|++++|.+. .+|...             +     ...++|+.|++.+|.++. +|..+   .++|+.|++++|.+
T Consensus       284 sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l---~~sL~~L~Ls~N~L  358 (754)
T PRK15370        284 ELRYLSVYDNSIR-TLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASL---PPELQVLDVSKNQI  358 (754)
T ss_pred             CCcEEECCCCccc-cCcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhh---cCcccEEECCCCCC
Confidence            4555555555443 222100             0     011345666666665542 33222   24666777776666


Q ss_pred             ccccccCCCCCCCCCcEEEccCCcc
Q 045865          163 NGVVRGQGFPHFKSLEHFDMRFARI  187 (225)
Q Consensus       163 ~~~~~~~~~~~~~~L~~l~l~~n~i  187 (225)
                      + .+|. .+  .++|+.|++++|++
T Consensus       359 ~-~LP~-~l--p~~L~~LdLs~N~L  379 (754)
T PRK15370        359 T-VLPE-TL--PPTITTLDVSRNAL  379 (754)
T ss_pred             C-cCCh-hh--cCCcCEEECCCCcC
Confidence            5 3343 22  23566666666643

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=1e-11  Score=98.79  Aligned_cols=165  Identities=26%  Similarity=0.312  Sum_probs=111.9

Q ss_pred             cCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCCh--hhHHhhhcCCCCCEEEcCCCCCCCccchhhhc
Q 045865           45 TPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNN--SILSSLTHLSSLRSLNLLWNRLEGSIDVKELH  122 (225)
Q Consensus        45 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  122 (225)
                      .++.+|+++.+.++.+.......   ....+++++.||+++|-+..  .+......+|+|+.|+++.|++.-......-.
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~---~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~  194 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEE---YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL  194 (505)
T ss_pred             hhHHhhhheeecCccccccchhh---hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh
Confidence            45788999999988877644321   46789999999999997753  34566678999999999999987333332333


Q ss_pred             cCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCC
Q 045865          123 NFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMP  202 (225)
Q Consensus       123 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~  202 (225)
                      .++.|+.|.++.|++++.....+...+|+|+.|.+..|........ ....+..|+.||+++|++.....++ ..+. ++
T Consensus       195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~-~~~i~~~L~~LdLs~N~li~~~~~~-~~~~-l~  271 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT-STKILQTLQELDLSNNNLIDFDQGY-KVGT-LP  271 (505)
T ss_pred             hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc-hhhhhhHHhhccccCCccccccccc-cccc-cc
Confidence            5678999999999998776655544489999999998842212112 3344566777777777553333222 2344 55


Q ss_pred             CCcEEEccCCcCC
Q 045865          203 SLKYLLLSYSTLG  215 (225)
Q Consensus       203 ~L~~L~l~~n~l~  215 (225)
                      .|..|+++.+.++
T Consensus       272 ~L~~Lnls~tgi~  284 (505)
T KOG3207|consen  272 GLNQLNLSSTGIA  284 (505)
T ss_pred             chhhhhccccCcc
Confidence            6666666665554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.16  E-value=5.6e-11  Score=90.66  Aligned_cols=191  Identities=21%  Similarity=0.256  Sum_probs=140.8

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHH-hcCCCCCEEECCCCCCChhhH-Hhh
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERL-SRLNNLKMLNLSGNSFNNSIL-SSL   96 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~-~~l   96 (225)
                      ..+|+++||.+|.+.  .|+-++..+.+++.|++|+++.|.+...+..     + ....+|+.|.+.+.++..... ..+
T Consensus        70 ~~~v~elDL~~N~iS--dWseI~~ile~lP~l~~LNls~N~L~s~I~~-----lp~p~~nl~~lVLNgT~L~w~~~~s~l  142 (418)
T KOG2982|consen   70 VTDVKELDLTGNLIS--DWSEIGAILEQLPALTTLNLSCNSLSSDIKS-----LPLPLKNLRVLVLNGTGLSWTQSTSSL  142 (418)
T ss_pred             hhhhhhhhcccchhc--cHHHHHHHHhcCccceEeeccCCcCCCcccc-----CcccccceEEEEEcCCCCChhhhhhhh
Confidence            458899999999885  6788999999999999999999998764433     2 345699999999998875433 445


Q ss_pred             hcCCCCCEEEcCCCCCCCc-cchhhhcc-CCCCceeecCCCCCc-HHHHHHHHhhCCCCCEEeccccccccccccCCCCC
Q 045865           97 THLSSLRSLNLLWNRLEGS-IDVKELHN-FTNLEYLTLESSSLH-ISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPH  173 (225)
Q Consensus        97 ~~l~~L~~L~l~~n~~~~~-~~~~~~~~-l~~L~~l~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  173 (225)
                      ..+|.++.|.++.|.+... ...+.... .+.+++++..+|... +.....+...+|++..+.+..|+++.......+..
T Consensus       143 ~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~  222 (418)
T KOG2982|consen  143 DDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEP  222 (418)
T ss_pred             hcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCC
Confidence            5688899999988854311 11111222 236777888877643 23333444448999999999999876666557777


Q ss_pred             CCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCcc
Q 045865          174 FKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNS  218 (225)
Q Consensus       174 ~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~  218 (225)
                      .+.+.-|+++.++|..+.+ ..++.+ ++.|..|.+..+++.+.+
T Consensus       223 ~p~~~~LnL~~~~idswas-vD~Ln~-f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  223 FPSLSCLNLGANNIDSWAS-VDALNG-FPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             CCcchhhhhcccccccHHH-HHHHcC-CchhheeeccCCcccccc
Confidence            8888999999998866655 356788 999999999999987643

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.12  E-value=8.3e-11  Score=96.61  Aligned_cols=180  Identities=28%  Similarity=0.402  Sum_probs=120.7

Q ss_pred             ceEEeeccccccccchhHHhhhhhcCCC-CccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865           21 RVIALDLSYIYSGEYSWYLNASLFTPFQ-QLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL   99 (225)
Q Consensus        21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l   99 (225)
                      .++.+++.++++.    .+++ ....++ .|+.|++++|.+.. .+.    .+..++.|+.|+++.|++.. .+......
T Consensus       117 ~l~~L~l~~n~i~----~i~~-~~~~~~~nL~~L~l~~N~i~~-l~~----~~~~l~~L~~L~l~~N~l~~-l~~~~~~~  185 (394)
T COG4886         117 NLTSLDLDNNNIT----DIPP-LIGLLKSNLKELDLSDNKIES-LPS----PLRNLPNLKNLDLSFNDLSD-LPKLLSNL  185 (394)
T ss_pred             ceeEEecCCcccc----cCcc-ccccchhhcccccccccchhh-hhh----hhhccccccccccCCchhhh-hhhhhhhh
Confidence            4667777777765    3333 224443 67777888877765 322    36777888888888887766 33333366


Q ss_pred             CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcE
Q 045865          100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEH  179 (225)
Q Consensus       100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  179 (225)
                      +.|+.|++++|.+. .+|. .......|+.+.+++|.+. ..+..+.. +.++..+.+..|.+.. .+. .++.+..++.
T Consensus       186 ~~L~~L~ls~N~i~-~l~~-~~~~~~~L~~l~~~~N~~~-~~~~~~~~-~~~l~~l~l~~n~~~~-~~~-~~~~l~~l~~  259 (394)
T COG4886         186 SNLNNLDLSGNKIS-DLPP-EIELLSALEELDLSNNSII-ELLSSLSN-LKNLSGLELSNNKLED-LPE-SIGNLSNLET  259 (394)
T ss_pred             hhhhheeccCCccc-cCch-hhhhhhhhhhhhhcCCcce-ecchhhhh-cccccccccCCceeee-ccc-hhccccccce
Confidence            77888888888776 5554 3334455777888877432 23444555 6777777777777652 233 6778888999


Q ss_pred             EEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865          180 FDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL  222 (225)
Q Consensus       180 l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~  222 (225)
                      +++++|.+   ..++. ++. ..+++.|++++|.++...|...
T Consensus       260 L~~s~n~i---~~i~~-~~~-~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         260 LDLSNNQI---SSISS-LGS-LTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             eccccccc---ccccc-ccc-cCccCEEeccCccccccchhhh
Confidence            99999966   23333 666 8899999999999987766544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.04  E-value=4e-11  Score=91.71  Aligned_cols=132  Identities=25%  Similarity=0.360  Sum_probs=99.0

Q ss_pred             CCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEE
Q 045865           76 NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNL  155 (225)
Q Consensus        76 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L  155 (225)
                      +.|.++|+++|.|+. ..++..-.|.++.|+++.|.+. .+.  .++.+++|..|++++|.+. ....+-.. +-+++.|
T Consensus       284 q~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~K-LGNIKtL  357 (490)
T KOG1259|consen  284 QELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLK-LGNIKTL  357 (490)
T ss_pred             hhhhhccccccchhh-hhhhhhhccceeEEecccccee-eeh--hhhhcccceEeecccchhH-hhhhhHhh-hcCEeee
Confidence            367888888888865 3455556788999999999886 444  5778888999999998875 33333334 7788899


Q ss_pred             eccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCcc
Q 045865          156 SMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNS  218 (225)
Q Consensus       156 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~  218 (225)
                      .++.|.+...   +.++.+-+|..||+++|+|...++ ...+++ +|.|+.+.+.+|++.+.+
T Consensus       358 ~La~N~iE~L---SGL~KLYSLvnLDl~~N~Ie~lde-V~~IG~-LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  358 KLAQNKIETL---SGLRKLYSLVNLDLSSNQIEELDE-VNHIGN-LPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             ehhhhhHhhh---hhhHhhhhheeccccccchhhHHH-hccccc-ccHHHHHhhcCCCccccc
Confidence            9999887522   257778889999999998754443 456788 999999999999988654

>PLN03150 hypothetical protein; Provisional

Probab=99.02  E-value=1.3e-09  Score=94.21  Aligned_cols=107  Identities=29%  Similarity=0.447  Sum_probs=52.9

Q ss_pred             ccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCce
Q 045865           50 LESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEY  129 (225)
Q Consensus        50 L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  129 (225)
                      ++.|++++|.+.+..|.    .+..+++|+.|++++|.+.+..|..+..++.|+.|++++|.+.+.+|. .+..+++|+.
T Consensus       420 v~~L~L~~n~L~g~ip~----~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L~~  494 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPN----DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLRI  494 (623)
T ss_pred             EEEEECCCCCccccCCH----HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCCCE
Confidence            44455555555544444    345555555555555555544555555555555555555555444443 4455555555


Q ss_pred             eecCCCCCcHHHHHHHHhhCCCCCEEeccccc
Q 045865          130 LTLESSSLHISLLQSIASIFPSLKNLSMSFCE  161 (225)
Q Consensus       130 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~  161 (225)
                      |++++|.+.+.+|..+.....++..+++.+|.
T Consensus       495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             EECcCCcccccCChHHhhccccCceEEecCCc
Confidence            55555555544444443312234444444443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.02  E-value=1e-09  Score=95.74  Aligned_cols=12  Identities=8%  Similarity=0.277  Sum_probs=8.7

Q ss_pred             CCcEEEccCCcc
Q 045865          176 SLEHFDMRFARI  187 (225)
Q Consensus       176 ~L~~l~l~~n~i  187 (225)
                      +|+.|++++|++
T Consensus       343 ~Lq~LdLS~N~L  354 (788)
T PRK15387        343 GLQELSVSDNQL  354 (788)
T ss_pred             ccceEecCCCcc
Confidence            577777777755

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.01  E-value=5.6e-11  Score=90.91  Aligned_cols=133  Identities=23%  Similarity=0.273  Sum_probs=107.7

Q ss_pred             hcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhcc
Q 045865           44 FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHN  123 (225)
Q Consensus        44 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  123 (225)
                      +..++.|+++++++|.|.. +..    .+.-.|.++.|+++.|.+...  ..+..+++|+.||+++|.+. .... --..
T Consensus       280 ~dTWq~LtelDLS~N~I~~-iDE----SvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~G-wh~K  350 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQ-IDE----SVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVG-WHLK  350 (490)
T ss_pred             cchHhhhhhccccccchhh-hhh----hhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhh-hHhh
Confidence            3446789999999999987 444    577889999999999999653  44888999999999999887 4443 3346


Q ss_pred             CCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccc
Q 045865          124 FTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIA  188 (225)
Q Consensus       124 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~  188 (225)
                      +.+++.|.+.+|.+.  ....+.. +.+|..|++.+|+|........+++++.|+++.+.+|.+.
T Consensus       351 LGNIKtL~La~N~iE--~LSGL~K-LYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  351 LGNIKTLKLAQNKIE--TLSGLRK-LYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hcCEeeeehhhhhHh--hhhhhHh-hhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            789999999999885  3456777 8889999999999975544458999999999999999763

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.95  E-value=7.4e-09  Score=78.35  Aligned_cols=197  Identities=17%  Similarity=0.143  Sum_probs=96.8

Q ss_pred             CceEEeeccccccccchhHHhhhhhc----------------------------------CCCCccEEEccCCcccCcch
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFT----------------------------------PFQQLESLDLTQNKIAGCVE   65 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~----------------------------------~l~~L~~L~l~~n~i~~~~~   65 (225)
                      ..+++++||||.+++.+..-....+.                                  +|++++.+++++|-|....|
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            46788999999888643333333333                                  44555555555555554444


Q ss_pred             hhHHHHHhcCCCCCEEECCCCCCCh----hhHHh---------hhcCCCCCEEEcCCCCCCCccch----hhhccCCCCc
Q 045865           66 NEGIERLSRLNNLKMLNLSGNSFNN----SILSS---------LTHLSSLRSLNLLWNRLEGSIDV----KELHNFTNLE  128 (225)
Q Consensus        66 ~~~~~~~~~l~~L~~L~l~~~~l~~----~~~~~---------l~~l~~L~~L~l~~n~~~~~~~~----~~~~~l~~L~  128 (225)
                      +.+...++....|.+|.+++|.+..    .+...         ...-|.|+...+.+|++. ..+.    ..+.....|+
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk  188 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENLK  188 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCce
Confidence            4444444555555555555554421    11111         112244555555555543 2111    1222334556


Q ss_pred             eeecCCCCCcHH-----HHHHHHhhCCCCCEEeccccccccccc---cCCCCCCCCCcEEEccCCccccch--hHHHHHh
Q 045865          129 YLTLESSSLHIS-----LLQSIASIFPSLKNLSMSFCEVNGVVR---GQGFPHFKSLEHFDMRFARIALNT--SFLQIIG  198 (225)
Q Consensus       129 ~l~l~~~~~~~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~~L~~l~l~~n~i~~~~--~~~~~l~  198 (225)
                      .+.+..|.|+..     ....+.+ +.+|+.|++++|.++....   ...+..++.|+.|.+..|-++..+  ++.+.+.
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~y-~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~  267 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLFY-SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN  267 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHHH-hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence            666666655522     1123444 5667777777776652111   124555666666666666332221  2222221


Q ss_pred             -hcCCCCcEEEccCCcCCCcc
Q 045865          199 -ESMPSLKYLLLSYSTLGTNS  218 (225)
Q Consensus       199 -~~~~~L~~L~l~~n~l~~~~  218 (225)
                       .-.|+|+.|...+|.+.+.+
T Consensus       268 e~~~p~l~~L~~~Yne~~~~~  288 (388)
T COG5238         268 EKFVPNLMPLPGDYNERRGGI  288 (388)
T ss_pred             hhcCCCccccccchhhhcCce
Confidence             11556667777766665543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=1e-10  Score=89.26  Aligned_cols=185  Identities=24%  Similarity=0.232  Sum_probs=112.4

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCC-CChh-hHHhh
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNS-FNNS-ILSSL   96 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~-~~~~l   96 (225)
                      .++++.+||+.-.+...  + .-..+..+++|+-|++.++.+.+.+..    .+.+..+|+.|+++++. ++.. ..-.+
T Consensus       184 rsRlq~lDLS~s~it~s--t-l~~iLs~C~kLk~lSlEg~~LdD~I~~----~iAkN~~L~~lnlsm~sG~t~n~~~ll~  256 (419)
T KOG2120|consen  184 RSRLQHLDLSNSVITVS--T-LHGILSQCSKLKNLSLEGLRLDDPIVN----TIAKNSNLVRLNLSMCSGFTENALQLLL  256 (419)
T ss_pred             hhhhHHhhcchhheeHH--H-HHHHHHHHHhhhhccccccccCcHHHH----HHhccccceeeccccccccchhHHHHHH
Confidence            35688889998877642  2 233667788999999999888765554    68889999999998874 4432 33456


Q ss_pred             hcCCCCCEEEcCCCCCCCccchhhhccC-CCCceeecCCCCCc--HHHHHHHHhhCCCCCEEeccccccccccccCCCCC
Q 045865           97 THLSSLRSLNLLWNRLEGSIDVKELHNF-TNLEYLTLESSSLH--ISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPH  173 (225)
Q Consensus        97 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l-~~L~~l~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  173 (225)
                      ..+..|+.|+++++....+.-...+... .+|+.|++++++-.  ......+...+++|.+|++++|........+.|.+
T Consensus       257 ~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k  336 (419)
T KOG2120|consen  257 SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK  336 (419)
T ss_pred             HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence            6788999999999987633221122222 35677777765421  12233333337777777777764321112225556


Q ss_pred             CCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCC
Q 045865          174 FKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYS  212 (225)
Q Consensus       174 ~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n  212 (225)
                      ++.|+++.++.|- .+..+..-.+.. +|.|..|++-++
T Consensus       337 f~~L~~lSlsRCY-~i~p~~~~~l~s-~psl~yLdv~g~  373 (419)
T KOG2120|consen  337 FNYLQHLSLSRCY-DIIPETLLELNS-KPSLVYLDVFGC  373 (419)
T ss_pred             cchheeeehhhhc-CCChHHeeeecc-CcceEEEEeccc
Confidence            6666777666662 111222223344 666666666554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.87  E-value=2e-09  Score=88.48  Aligned_cols=174  Identities=28%  Similarity=0.399  Sum_probs=128.8

Q ss_pred             EeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCC-CCCEEECCCCCCChhhHHhhhcCCCC
Q 045865           24 ALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLN-NLKMLNLSGNSFNNSILSSLTHLSSL  102 (225)
Q Consensus        24 ~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~l~~l~~L  102 (225)
                      .++...+.+..     ....+..++.++.|++.+|.+... ++    ....+. +|+.|++++|.+.. .+..+..++.|
T Consensus        97 ~l~~~~~~~~~-----~~~~~~~~~~l~~L~l~~n~i~~i-~~----~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L  165 (394)
T COG4886          97 SLDLNLNRLRS-----NISELLELTNLTSLDLDNNNITDI-PP----LIGLLKSNLKELDLSDNKIES-LPSPLRNLPNL  165 (394)
T ss_pred             eeecccccccc-----CchhhhcccceeEEecCCcccccC-cc----ccccchhhcccccccccchhh-hhhhhhccccc
Confidence            35555555421     222334557899999999999874 43    245553 89999999999876 44677889999


Q ss_pred             CEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEc
Q 045865          103 RSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDM  182 (225)
Q Consensus       103 ~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l  182 (225)
                      +.|+++.|.+. .++. .......|+.+++++|.+. .++..... ...|+++.++.|.+. ..+. .+.++..+..+.+
T Consensus       166 ~~L~l~~N~l~-~l~~-~~~~~~~L~~L~ls~N~i~-~l~~~~~~-~~~L~~l~~~~N~~~-~~~~-~~~~~~~l~~l~l  239 (394)
T COG4886         166 KNLDLSFNDLS-DLPK-LLSNLSNLNNLDLSGNKIS-DLPPEIEL-LSALEELDLSNNSII-ELLS-SLSNLKNLSGLEL  239 (394)
T ss_pred             cccccCCchhh-hhhh-hhhhhhhhhheeccCCccc-cCchhhhh-hhhhhhhhhcCCcce-ecch-hhhhccccccccc
Confidence            99999999997 6664 4447889999999999987 44544443 566999999999643 3344 6788888899888


Q ss_pred             cCCccccchhHHHHHhhcCCCCcEEEccCCcCCCcc
Q 045865          183 RFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNS  218 (225)
Q Consensus       183 ~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~  218 (225)
                      ..|++.   .++..++. +++++.|++++|.++...
T Consensus       240 ~~n~~~---~~~~~~~~-l~~l~~L~~s~n~i~~i~  271 (394)
T COG4886         240 SNNKLE---DLPESIGN-LSNLETLDLSNNQISSIS  271 (394)
T ss_pred             CCceee---eccchhcc-ccccceeccccccccccc
Confidence            999652   22556677 889999999999998554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.78  E-value=4.9e-11  Score=97.98  Aligned_cols=176  Identities=22%  Similarity=0.259  Sum_probs=133.7

Q ss_pred             eeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCE
Q 045865           25 LDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRS  104 (225)
Q Consensus        25 l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~  104 (225)
                      |.|++-++...  ...+.. ..+......+++.|++.. +|.    .++.+..|..+.++.|.+-. .|..+..+..|.+
T Consensus        55 l~Ls~rrlk~f--pr~a~~-~~ltdt~~aDlsrNR~~e-lp~----~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~  125 (722)
T KOG0532|consen   55 LLLSGRRLKEF--PRGAAS-YDLTDTVFADLSRNRFSE-LPE----EACAFVSLESLILYHNCIRT-IPEAICNLEALTF  125 (722)
T ss_pred             cccccchhhcC--CCcccc-ccccchhhhhcccccccc-Cch----HHHHHHHHHHHHHHhcccee-cchhhhhhhHHHH
Confidence            55555555421  112222 345566678899999887 565    46667788888888887754 6788889999999


Q ss_pred             EEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccC
Q 045865          105 LNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRF  184 (225)
Q Consensus       105 L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~  184 (225)
                      ++++.|.+. .+|. .+..++ |+.+.+++|++. .+|..++. ...|..|+.+.|.+. ..+. -++++.+|+.+.+..
T Consensus       126 l~ls~NqlS-~lp~-~lC~lp-Lkvli~sNNkl~-~lp~~ig~-~~tl~~ld~s~nei~-slps-ql~~l~slr~l~vrR  198 (722)
T KOG0532|consen  126 LDLSSNQLS-HLPD-GLCDLP-LKVLIVSNNKLT-SLPEEIGL-LPTLAHLDVSKNEIQ-SLPS-QLGYLTSLRDLNVRR  198 (722)
T ss_pred             hhhccchhh-cCCh-hhhcCc-ceeEEEecCccc-cCCccccc-chhHHHhhhhhhhhh-hchH-HhhhHHHHHHHHHhh
Confidence            999999997 7776 665554 899999999886 56777775 889999999999986 5565 688999999999999


Q ss_pred             CccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865          185 ARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL  222 (225)
Q Consensus       185 n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~  222 (225)
                      |++   ..+|..+.. ++ |.+||++.|+++. +|..|
T Consensus       199 n~l---~~lp~El~~-Lp-Li~lDfScNkis~-iPv~f  230 (722)
T KOG0532|consen  199 NHL---EDLPEELCS-LP-LIRLDFSCNKISY-LPVDF  230 (722)
T ss_pred             hhh---hhCCHHHhC-Cc-eeeeecccCceee-cchhh
Confidence            976   677888875 65 8899999999994 44443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.78  E-value=3.9e-09  Score=62.93  Aligned_cols=23  Identities=30%  Similarity=0.619  Sum_probs=9.4

Q ss_pred             HhhhhhcCCCCccEEEccCCccc
Q 045865           39 LNASLFTPFQQLESLDLTQNKIA   61 (225)
Q Consensus        39 ~~~~~~~~l~~L~~L~l~~n~i~   61 (225)
                      +++..|.++++|++|++++|.+.
T Consensus        16 i~~~~f~~l~~L~~L~l~~N~l~   38 (61)
T PF13855_consen   16 IPPDSFSNLPNLETLDLSNNNLT   38 (61)
T ss_dssp             ECTTTTTTGTTESEEEETSSSES
T ss_pred             cCHHHHcCCCCCCEeEccCCccC
Confidence            33334444444444444444443

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.77  E-value=3.8e-09  Score=63.01  Aligned_cols=61  Identities=38%  Similarity=0.518  Sum_probs=54.6

Q ss_pred             CCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCC
Q 045865           48 QQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRL  112 (225)
Q Consensus        48 ~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~  112 (225)
                      ++|++|++++|.+....+.    .|..+++|++|++++|.+....+..|..+++|+++++++|.+
T Consensus         1 p~L~~L~l~~n~l~~i~~~----~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPD----SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTT----TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHH----HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5789999999999875444    688999999999999999988888999999999999999974

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.62  E-value=6.5e-08  Score=74.22  Aligned_cols=169  Identities=21%  Similarity=0.207  Sum_probs=116.5

Q ss_pred             CCCccEEEccCCcccCcchhhHHHHHh-cCCCCCEEECCCCCCCh--hhHHhhhcCCCCCEEEcCCCCCCCccchhhhcc
Q 045865           47 FQQLESLDLTQNKIAGCVENEGIERLS-RLNNLKMLNLSGNSFNN--SILSSLTHLSSLRSLNLLWNRLEGSIDVKELHN  123 (225)
Q Consensus        47 l~~L~~L~l~~n~i~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  123 (225)
                      .+.++.+-+.++.|.......   .|+ .+..++.+|+.+|.+++  .+...+.++|.|+.|+++.|.+.+.+.. ....
T Consensus        44 ~ra~ellvln~~~id~~gd~~---~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~-lp~p  119 (418)
T KOG2982|consen   44 LRALELLVLNGSIIDNEGDVM---LFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS-LPLP  119 (418)
T ss_pred             ccchhhheecCCCCCcchhHH---HHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc-Cccc
Confidence            344556666777765433322   333 57899999999999974  3445566899999999999998755543 2246


Q ss_pred             CCCCceeecCCCCCcHHHHHHHHhhCCCCCEEecccccccccccc-CCCCC-CCCCcEEEccCCccccchhHHHHHhhcC
Q 045865          124 FTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRG-QGFPH-FKSLEHFDMRFARIALNTSFLQIIGESM  201 (225)
Q Consensus       124 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~-~~~L~~l~l~~n~i~~~~~~~~~l~~~~  201 (225)
                      ..+|+++.|+++.+.+.....+...+|.+++|+++.|.......+ ..... .+.+.++++..|....+....+.-.. +
T Consensus       120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~-F  198 (418)
T KOG2982|consen  120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI-F  198 (418)
T ss_pred             ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh-c
Confidence            779999999999988776655544489999999999954311111 11222 23677888888866666665554444 8


Q ss_pred             CCCcEEEccCCcCCCccch
Q 045865          202 PSLKYLLLSYSTLGTNSSR  220 (225)
Q Consensus       202 ~~L~~L~l~~n~l~~~~~~  220 (225)
                      +++..+.+..|++.....+
T Consensus       199 pnv~sv~v~e~PlK~~s~e  217 (418)
T KOG2982|consen  199 PNVNSVFVCEGPLKTESSE  217 (418)
T ss_pred             ccchheeeecCcccchhhc
Confidence            8999999999988765443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.61  E-value=2.5e-08  Score=88.77  Aligned_cols=91  Identities=26%  Similarity=0.312  Sum_probs=43.7

Q ss_pred             HHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccc
Q 045865           38 YLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSID  117 (225)
Q Consensus        38 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  117 (225)
                      .++...|..++.|.+||+++|.=....|.    .++.+-+||+|+++++.+.. +|..+..+..|.+|++..+.....++
T Consensus       561 ~is~~ff~~m~~LrVLDLs~~~~l~~LP~----~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~Lnl~~~~~l~~~~  635 (889)
T KOG4658|consen  561 EISGEFFRSLPLLRVLDLSGNSSLSKLPS----SIGELVHLRYLDLSDTGISH-LPSGLGNLKKLIYLNLEVTGRLESIP  635 (889)
T ss_pred             hcCHHHHhhCcceEEEECCCCCccCcCCh----HHhhhhhhhcccccCCCccc-cchHHHHHHhhheecccccccccccc
Confidence            33444455555555555554433333444    35555555555555555543 45555555555555555544332222


Q ss_pred             hhhhccCCCCceeecCC
Q 045865          118 VKELHNFTNLEYLTLES  134 (225)
Q Consensus       118 ~~~~~~l~~L~~l~l~~  134 (225)
                      . ....+++|++|.+..
T Consensus       636 ~-i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  636 G-ILLELQSLRVLRLPR  651 (889)
T ss_pred             c-hhhhcccccEEEeec
Confidence            1 333355555555543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=1.3e-08  Score=78.03  Aligned_cols=161  Identities=23%  Similarity=0.188  Sum_probs=103.0

Q ss_pred             CccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccc-hhhhccCCCC
Q 045865           49 QLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSID-VKELHNFTNL  127 (225)
Q Consensus        49 ~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L  127 (225)
                      .++.||++...|+...-..   .+..+.+|+.|.+.++.+.+.+...++.-..|+.++++.+.-..... .-.+..++.|
T Consensus       186 Rlq~lDLS~s~it~stl~~---iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHG---ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhHHhhcchhheeHHHHHH---HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence            3666777776665322221   35667788888888888877667777777788888887764221222 1145567778


Q ss_pred             ceeecCCCCCcHHHH-HHHHhhCCCCCEEecccccc--ccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCC
Q 045865          128 EYLTLESSSLHISLL-QSIASIFPSLKNLSMSFCEV--NGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSL  204 (225)
Q Consensus       128 ~~l~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~--~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L  204 (225)
                      ..|++++|....... ..+.+.-++|..|+++++.-  ...-.......+++|.+||+++|. .+......++.+ ++.|
T Consensus       263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v-~l~~~~~~~~~k-f~~L  340 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV-MLKNDCFQEFFK-FNYL  340 (419)
T ss_pred             hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc-ccCchHHHHHHh-cchh
Confidence            888888876543322 22333235677777777641  111111134578899999999885 455577778888 9999


Q ss_pred             cEEEccCCcC
Q 045865          205 KYLLLSYSTL  214 (225)
Q Consensus       205 ~~L~l~~n~l  214 (225)
                      +.|+++.|..
T Consensus       341 ~~lSlsRCY~  350 (419)
T KOG2120|consen  341 QHLSLSRCYD  350 (419)
T ss_pred             eeeehhhhcC
Confidence            9999988854

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.41  E-value=3.9e-08  Score=81.39  Aligned_cols=175  Identities=24%  Similarity=0.268  Sum_probs=97.6

Q ss_pred             eEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCC
Q 045865           22 VIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS  101 (225)
Q Consensus        22 v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~  101 (225)
                      +..+++..|.+.    + ....+..+++++.|++.+|.|......     +..+++|++|++++|.|+..  ..+..+..
T Consensus        74 l~~l~l~~n~i~----~-~~~~l~~~~~l~~l~l~~n~i~~i~~~-----l~~~~~L~~L~ls~N~I~~i--~~l~~l~~  141 (414)
T KOG0531|consen   74 LKELNLRQNLIA----K-ILNHLSKLKSLEALDLYDNKIEKIENL-----LSSLVNLQVLDLSFNKITKL--EGLSTLTL  141 (414)
T ss_pred             HHhhccchhhhh----h-hhcccccccceeeeeccccchhhcccc-----hhhhhcchheeccccccccc--cchhhccc
Confidence            344555555543    1 223356677777777777777653321     45677777777777777653  23344555


Q ss_pred             CCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEecccccccccccc-------------
Q 045865          102 LRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRG-------------  168 (225)
Q Consensus       102 L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-------------  168 (225)
                      |+.|++.+|.+. .+.  .+..+..|+.+++++|.+.......... +.+++.+.+.+|.+......             
T Consensus       142 L~~L~l~~N~i~-~~~--~~~~l~~L~~l~l~~n~i~~ie~~~~~~-~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~  217 (414)
T KOG0531|consen  142 LKELNLSGNLIS-DIS--GLESLKSLKLLDLSYNRIVDIENDELSE-LISLEELDLGGNSIREIEGLDLLKKLVLLSLLD  217 (414)
T ss_pred             hhhheeccCcch-hcc--CCccchhhhcccCCcchhhhhhhhhhhh-ccchHHHhccCCchhcccchHHHHHHHHhhccc
Confidence            777777777775 333  4444667777777777765332200233 66677777777765411100             


Q ss_pred             ------CCCCCCCC--CcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCC
Q 045865          169 ------QGFPHFKS--LEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGT  216 (225)
Q Consensus       169 ------~~~~~~~~--L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~  216 (225)
                            ..+.....  |+.+++++|++.   ..+..+.. +..+..+++.+|+++.
T Consensus       218 n~i~~~~~l~~~~~~~L~~l~l~~n~i~---~~~~~~~~-~~~l~~l~~~~n~~~~  269 (414)
T KOG0531|consen  218 NKISKLEGLNELVMLHLRELYLSGNRIS---RSPEGLEN-LKNLPVLDLSSNRISN  269 (414)
T ss_pred             ccceeccCcccchhHHHHHHhcccCccc---cccccccc-cccccccchhhccccc
Confidence                  01111111  566666666542   22233444 6667777777776653

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.39  E-value=6.5e-07  Score=79.96  Aligned_cols=128  Identities=25%  Similarity=0.254  Sum_probs=87.8

Q ss_pred             ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCc--ccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865           21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNK--IAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH   98 (225)
Q Consensus        21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~--i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~   98 (225)
                      .++++++-++.+.    .+.. . ...+.|++|-+..|.  +......    -|..+|.|+.||+++|.-...+|..++.
T Consensus       524 ~~rr~s~~~~~~~----~~~~-~-~~~~~L~tLll~~n~~~l~~is~~----ff~~m~~LrVLDLs~~~~l~~LP~~I~~  593 (889)
T KOG4658|consen  524 SVRRMSLMNNKIE----HIAG-S-SENPKLRTLLLQRNSDWLLEISGE----FFRSLPLLRVLDLSGNSSLSKLPSSIGE  593 (889)
T ss_pred             heeEEEEeccchh----hccC-C-CCCCccceEEEeecchhhhhcCHH----HHhhCcceEEEECCCCCccCcCChHHhh
Confidence            5566666666553    2211 1 234467777777775  3332222    3677888888888887766668888888


Q ss_pred             CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccc
Q 045865           99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCE  161 (225)
Q Consensus        99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~  161 (225)
                      +.+|++|+++++.+. .+|. .+..+..|.+|++..+......+..... +.+|+.|.+....
T Consensus       594 Li~LryL~L~~t~I~-~LP~-~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~-L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  594 LVHLRYLDLSDTGIS-HLPS-GLGNLKKLIYLNLEVTGRLESIPGILLE-LQSLRVLRLPRSA  653 (889)
T ss_pred             hhhhhcccccCCCcc-ccch-HHHHHHhhheeccccccccccccchhhh-cccccEEEeeccc
Confidence            888888888888886 7777 8888888888888876654444555555 7888888776654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.38  E-value=4.6e-07  Score=68.86  Aligned_cols=197  Identities=16%  Similarity=0.147  Sum_probs=131.8

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHH---------HHHhcCCCCCEEECCCCCCC
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGI---------ERLSRLNNLKMLNLSGNSFN   89 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~---------~~~~~l~~L~~L~l~~~~l~   89 (225)
                      +++++.++||.|-++..+.......+++-..|..|.+++|.+.......+.         +....-|.|+..+...|.+.
T Consensus        91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle  170 (388)
T COG5238          91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE  170 (388)
T ss_pred             CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence            468999999999998765555666777888899999999987543222111         12345689999999999885


Q ss_pred             h----hhHHhhhcCCCCCEEEcCCCCCCCc----cchhhhccCCCCceeecCCCCCcHH----HHHHHHhhCCCCCEEec
Q 045865           90 N----SILSSLTHLSSLRSLNLLWNRLEGS----IDVKELHNFTNLEYLTLESSSLHIS----LLQSIASIFPSLKNLSM  157 (225)
Q Consensus        90 ~----~~~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~~L~~L~l  157 (225)
                      .    .....+.....|+.+.+..|.+...    +.-..+.-+++|+.|++.+|.++-.    +...+.. |+.|++|.+
T Consensus       171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~-W~~lrEL~l  249 (388)
T COG5238         171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE-WNLLRELRL  249 (388)
T ss_pred             cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcc-cchhhhccc
Confidence            3    2233444556899999999988633    1111344567999999999988732    3455666 888999999


Q ss_pred             cccccccccccCC---CC--CCCCCcEEEccCCcccc----chhHHHHHhhcCCCCcEEEccCCcCCC
Q 045865          158 SFCEVNGVVRGQG---FP--HFKSLEHFDMRFARIAL----NTSFLQIIGESMPSLKYLLLSYSTLGT  216 (225)
Q Consensus       158 ~~n~~~~~~~~~~---~~--~~~~L~~l~l~~n~i~~----~~~~~~~l~~~~~~L~~L~l~~n~l~~  216 (225)
                      .+|.++.......   |.  ..++|..|...+|.+..    +..++......+|-|..|.+.+|+|..
T Consensus       250 nDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         250 NDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             cchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            9998764332212   22  24567777777774311    122444444447788888888888864

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.32  E-value=5e-07  Score=78.67  Aligned_cols=142  Identities=23%  Similarity=0.266  Sum_probs=76.8

Q ss_pred             CCCCEEECCCCCCC-hhhHHhhh-cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCC
Q 045865           76 NNLKMLNLSGNSFN-NSILSSLT-HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLK  153 (225)
Q Consensus        76 ~~L~~L~l~~~~l~-~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~  153 (225)
                      .+|++|++++...- ...+..++ -+|.|+.|.+.+-.+...-......++++|..||++++.+...  .++.. +++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~-LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISR-LKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhc-cccHH
Confidence            46777777665442 22233333 3577777777665543222222555667777777777766532  45555 67777


Q ss_pred             EEeccccccccccccCCCCCCCCCcEEEccCCccccchhHH-H--HHhhcCCCCcEEEccCCcCCCccch
Q 045865          154 NLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFL-Q--IIGESMPSLKYLLLSYSTLGTNSSR  220 (225)
Q Consensus       154 ~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~-~--~l~~~~~~L~~L~l~~n~l~~~~~~  220 (225)
                      .|.+.+-.+.....-..+.++++|+.||+|..+......+. .  +-+..+|+|+.||.+++.+.+..-+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le  268 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE  268 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence            77666655542111124556777777777765321111111 1  1123367777777777766654443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.30  E-value=3.4e-08  Score=83.90  Aligned_cols=129  Identities=23%  Similarity=0.314  Sum_probs=85.7

Q ss_pred             ccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCce
Q 045865           50 LESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEY  129 (225)
Q Consensus        50 L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  129 (225)
                      |.+.+++.|.+.. ...    .+.-++.++.|+|+.|+++..  ..+..++.|++||++.|.+. .+|.-....+ .|..
T Consensus       166 L~~a~fsyN~L~~-mD~----SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~  236 (1096)
T KOG1859|consen  166 LATASFSYNRLVL-MDE----SLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQL  236 (1096)
T ss_pred             HhhhhcchhhHHh-HHH----HHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hhee
Confidence            4444455555443 222    466678888888888888763  37778888888888888876 5553122222 4888


Q ss_pred             eecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccc
Q 045865          130 LTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALN  190 (225)
Q Consensus       130 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~  190 (225)
                      |.+.+|-++  ....+.+ +.+|+.|++++|-+.+..-...+..+..|+.|.+.+|.+...
T Consensus       237 L~lrnN~l~--tL~gie~-LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  237 LNLRNNALT--TLRGIEN-LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             eeecccHHH--hhhhHHh-hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            888888764  3456666 888888888888776543333455667788888888866443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.28  E-value=2.7e-06  Score=74.23  Aligned_cols=153  Identities=20%  Similarity=0.279  Sum_probs=102.8

Q ss_pred             CCccEEEccCCccc-CcchhhHHHHH-hcCCCCCEEECCCCCCCh-hhHHhhhcCCCCCEEEcCCCCCCCccchhhhccC
Q 045865           48 QQLESLDLTQNKIA-GCVENEGIERL-SRLNNLKMLNLSGNSFNN-SILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNF  124 (225)
Q Consensus        48 ~~L~~L~l~~n~i~-~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l  124 (225)
                      .+|+.|++++...- ...+.    .+ .-+|.|+.|.+++-.+.. .......++|+|..||++++.+. .+.  .+..+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~----kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl~--GIS~L  194 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPK----KIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NLS--GISRL  194 (699)
T ss_pred             HhhhhcCccccchhhccHHH----HHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-CcH--HHhcc
Confidence            45777788765432 21222    23 358999999999877743 33445567899999999999887 443  78888


Q ss_pred             CCCceeecCCCCCcH-HHHHHHHhhCCCCCEEecccccccccc--cc---CCCCCCCCCcEEEccCCccccchhHHHHHh
Q 045865          125 TNLEYLTLESSSLHI-SLLQSIASIFPSLKNLSMSFCEVNGVV--RG---QGFPHFKSLEHFDMRFARIALNTSFLQIIG  198 (225)
Q Consensus       125 ~~L~~l~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~---~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~  198 (225)
                      ++|+.|.+.+=.+.. .....++. +++|+.|+++........  ..   +.-..++.|+.||.|++  .....+.+.+-
T Consensus       195 knLq~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT--di~~~~le~ll  271 (699)
T KOG3665|consen  195 KNLQVLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT--DINEEILEELL  271 (699)
T ss_pred             ccHHHHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc--chhHHHHHHHH
Confidence            999999887755542 34567787 999999999987654221  11   12335789999999999  55566555544


Q ss_pred             hcCCCCcEEEcc
Q 045865          199 ESMPSLKYLLLS  210 (225)
Q Consensus       199 ~~~~~L~~L~l~  210 (225)
                      ..=++|+.+.+-
T Consensus       272 ~sH~~L~~i~~~  283 (699)
T KOG3665|consen  272 NSHPNLQQIAAL  283 (699)
T ss_pred             HhCccHhhhhhh
Confidence            435566665544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.26  E-value=1.2e-07  Score=78.53  Aligned_cols=130  Identities=28%  Similarity=0.415  Sum_probs=99.1

Q ss_pred             cCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccC
Q 045865           45 TPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNF  124 (225)
Q Consensus        45 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l  124 (225)
                      ..+..++.+++..|.+.....     .+..+.+|..|++.+|.+... ...+..+++|++|+++.|.+. .+.  .+..+
T Consensus        69 ~~l~~l~~l~l~~n~i~~~~~-----~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-~i~--~l~~l  139 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAKILN-----HLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-KLE--GLSTL  139 (414)
T ss_pred             HHhHhHHhhccchhhhhhhhc-----ccccccceeeeeccccchhhc-ccchhhhhcchheeccccccc-ccc--chhhc
Confidence            456677777888888865222     378899999999999999763 222678999999999999997 443  56677


Q ss_pred             CCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCcc
Q 045865          125 TNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARI  187 (225)
Q Consensus       125 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i  187 (225)
                      ..|+.|++.+|.+...  ..+.. ++.|+.+++++|.+....... ...+.+++.+.+..|.+
T Consensus       140 ~~L~~L~l~~N~i~~~--~~~~~-l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  140 TLLKELNLSGNLISDI--SGLES-LKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI  198 (414)
T ss_pred             cchhhheeccCcchhc--cCCcc-chhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence            7799999999998632  34444 788999999999987442211 47788888899999865

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.21  E-value=1.6e-07  Score=64.14  Aligned_cols=105  Identities=22%  Similarity=0.285  Sum_probs=79.4

Q ss_pred             EEeeccccccccchhHHhh--hhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCC
Q 045865           23 IALDLSYIYSGEYSWYLNA--SLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS  100 (225)
Q Consensus        23 ~~l~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~  100 (225)
                      -.++|+.+++.    ++..  ..+.+..+|+..++++|.+.. .|..   -..+++.+..|++++|.+.+ +|..+..++
T Consensus        30 h~ldLssc~lm----~i~davy~l~~~~el~~i~ls~N~fk~-fp~k---ft~kf~t~t~lNl~~neisd-vPeE~Aam~  100 (177)
T KOG4579|consen   30 HFLDLSSCQLM----YIADAVYMLSKGYELTKISLSDNGFKK-FPKK---FTIKFPTATTLNLANNEISD-VPEELAAMP  100 (177)
T ss_pred             hhcccccchhh----HHHHHHHHHhCCceEEEEecccchhhh-CCHH---Hhhccchhhhhhcchhhhhh-chHHHhhhH
Confidence            35788888776    4433  244556678888999999887 4542   23467789999999999987 677799999


Q ss_pred             CCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCc
Q 045865          101 SLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLH  138 (225)
Q Consensus       101 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~  138 (225)
                      .|+.+++..|.+. ..|. .+..+.++-.|+..+|.+.
T Consensus       101 aLr~lNl~~N~l~-~~p~-vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  101 ALRSLNLRFNPLN-AEPR-VIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             HhhhcccccCccc-cchH-HHHHHHhHHHhcCCCCccc
Confidence            9999999999987 5555 5555888888888888765

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.20  E-value=2.3e-07  Score=79.11  Aligned_cols=105  Identities=27%  Similarity=0.369  Sum_probs=72.9

Q ss_pred             CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcE
Q 045865          100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEH  179 (225)
Q Consensus       100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  179 (225)
                      ..|...+++.|.+. .+.. .++-++.++.|+|+.|++...  .++.. +++|++|++++|.+. .+|...-..++ |..
T Consensus       164 n~L~~a~fsyN~L~-~mD~-SLqll~ale~LnLshNk~~~v--~~Lr~-l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~  236 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDE-SLQLLPALESLNLSHNKFTKV--DNLRR-LPKLKHLDLSYNCLR-HVPQLSMVGCK-LQL  236 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHH-HHHHHHHhhhhccchhhhhhh--HHHHh-cccccccccccchhc-cccccchhhhh-hee
Confidence            34555666666654 4444 677788899999999998643  47777 899999999999886 44542333455 888


Q ss_pred             EEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCC
Q 045865          180 FDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGT  216 (225)
Q Consensus       180 l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~  216 (225)
                      |.+++|.+  + . ...+.+ +.+|+-||+++|-|.+
T Consensus       237 L~lrnN~l--~-t-L~gie~-LksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  237 LNLRNNAL--T-T-LRGIEN-LKSLYGLDLSYNLLSE  268 (1096)
T ss_pred             eeecccHH--H-h-hhhHHh-hhhhhccchhHhhhhc
Confidence            88888854  1 2 334566 7778888888887754

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.20  E-value=1.3e-07  Score=64.63  Aligned_cols=81  Identities=19%  Similarity=0.265  Sum_probs=35.4

Q ss_pred             CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcE
Q 045865          100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEH  179 (225)
Q Consensus       100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  179 (225)
                      ..|...++++|.+. .+|......++.++.+++..|.++ .+|..+.. |+.|+.++++.|.+. ..|. .+..+.++..
T Consensus        53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aa-m~aLr~lNl~~N~l~-~~p~-vi~~L~~l~~  127 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAA-MPALRSLNLRFNPLN-AEPR-VIAPLIKLDM  127 (177)
T ss_pred             ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhh-hHHhhhcccccCccc-cchH-HHHHHHhHHH
Confidence            33444444444443 333322333334445555555544 23333444 555555555555544 2233 3333444555


Q ss_pred             EEccCC
Q 045865          180 FDMRFA  185 (225)
Q Consensus       180 l~l~~n  185 (225)
                      |+...|
T Consensus       128 Lds~~n  133 (177)
T KOG4579|consen  128 LDSPEN  133 (177)
T ss_pred             hcCCCC
Confidence            554444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.15  E-value=1.2e-06  Score=63.70  Aligned_cols=41  Identities=29%  Similarity=0.272  Sum_probs=17.8

Q ss_pred             HhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCC
Q 045865           72 LSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRL  112 (225)
Q Consensus        72 ~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~  112 (225)
                      |..++.|.+|.+++|.|+.+.|.--.-+++|..|.+.+|.+
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi  100 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI  100 (233)
T ss_pred             CCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence            34444445555555544443333222334444444444444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.12  E-value=3.4e-06  Score=46.42  Aligned_cols=37  Identities=27%  Similarity=0.441  Sum_probs=22.8

Q ss_pred             CCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCC
Q 045865          176 SLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGT  216 (225)
Q Consensus       176 ~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~  216 (225)
                      +|++|++++|+|   ..++..+++ +++|+.|++++|+|+.
T Consensus         2 ~L~~L~l~~N~i---~~l~~~l~~-l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQI---TDLPPELSN-LPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS----SSHGGHGTT-CTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCC---cccCchHhC-CCCCCEEEecCCCCCC
Confidence            566777777755   345555666 7777777777777763

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.90  E-value=2.7e-05  Score=42.75  Aligned_cols=36  Identities=36%  Similarity=0.542  Sum_probs=16.1

Q ss_pred             CCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCC
Q 045865           77 NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLE  113 (225)
Q Consensus        77 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~  113 (225)
                      +|++|++++|.++. ++..+..+++|+.|++++|.+.
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            34455555555443 2333445555555555555444

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.76  E-value=3.1e-05  Score=56.49  Aligned_cols=128  Identities=27%  Similarity=0.268  Sum_probs=90.3

Q ss_pred             ccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCce
Q 045865           50 LESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEY  129 (225)
Q Consensus        50 L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  129 (225)
                      =+++++.+..+.....-     -........+||++|.+-.  ...|..++.|.+|.+..|++. .+.+..-..+++|..
T Consensus        21 e~e~~LR~lkip~ienl-----g~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~   92 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENL-----GATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKT   92 (233)
T ss_pred             ccccccccccccchhhc-----cccccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccce
Confidence            35677777776542211     1234577888999998743  356678889999999999998 555424556678999


Q ss_pred             eecCCCCCcHHH-HHHHHhhCCCCCEEeccccccccccc--cCCCCCCCCCcEEEccCCc
Q 045865          130 LTLESSSLHISL-LQSIASIFPSLKNLSMSFCEVNGVVR--GQGFPHFKSLEHFDMRFAR  186 (225)
Q Consensus       130 l~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~L~~l~l~~n~  186 (225)
                      |.+.+|.+.... ..-+.. +|+|+.|.+-+|+++..-.  .-.+..+++|+.||+..-.
T Consensus        93 L~LtnNsi~~l~dl~pLa~-~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen   93 LILTNNSIQELGDLDPLAS-CPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             EEecCcchhhhhhcchhcc-CCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            999999886321 234555 8999999999998864311  1256688999999998864

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.72  E-value=2.8e-06  Score=64.87  Aligned_cols=83  Identities=27%  Similarity=0.330  Sum_probs=47.1

Q ss_pred             CCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHH-HHHHHhhCCCCC
Q 045865           75 LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISL-LQSIASIFPSLK  153 (225)
Q Consensus        75 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~L~  153 (225)
                      +.+.++|++.+|.++++  .....++.|+.|.++-|++. .+.  .+..+++|+.|+|..|.|.+.- ...+.+ +|+|+
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~--pl~rCtrLkElYLRkN~I~sldEL~YLkn-lpsLr   91 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLA--PLQRCTRLKELYLRKNCIESLDELEYLKN-LPSLR   91 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cch--hHHHHHHHHHHHHHhcccccHHHHHHHhc-Cchhh
Confidence            44556666666666542  33345666666666666665 333  4556666666666666665322 223344 66666


Q ss_pred             EEeccccccc
Q 045865          154 NLSMSFCEVN  163 (225)
Q Consensus       154 ~L~l~~n~~~  163 (225)
                      .|.+..|+-.
T Consensus        92 ~LWL~ENPCc  101 (388)
T KOG2123|consen   92 TLWLDENPCC  101 (388)
T ss_pred             hHhhccCCcc
Confidence            6666666543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.69  E-value=2.5e-05  Score=62.79  Aligned_cols=188  Identities=19%  Similarity=0.163  Sum_probs=111.9

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHH-hcCCCCCEEECCCCC-CChhhHHh-h
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERL-SRLNNLKMLNLSGNS-FNNSILSS-L   96 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~-~~l~~L~~L~l~~~~-l~~~~~~~-l   96 (225)
                      +.+++|+++|++--..  .-.......+++++.|.+.++..   +.+.-+..+ ..++.|++|++..|. ++...... .
T Consensus       138 g~lk~LSlrG~r~v~~--sslrt~~~~CpnIehL~l~gc~~---iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la  212 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGD--SSLRTFASNCPNIEHLALYGCKK---ITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA  212 (483)
T ss_pred             cccccccccccccCCc--chhhHHhhhCCchhhhhhhccee---ccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence            5678888888764321  22333456788888888877752   222222233 468899999998854 55544443 3


Q ss_pred             hcCCCCCEEEcCCCCC-CCccchhhhccCCCCceeecCCCC-CcHHHHHHHHhhCCCCCEEeccccc-cccccccCCCCC
Q 045865           97 THLSSLRSLNLLWNRL-EGSIDVKELHNFTNLEYLTLESSS-LHISLLQSIASIFPSLKNLSMSFCE-VNGVVRGQGFPH  173 (225)
Q Consensus        97 ~~l~~L~~L~l~~n~~-~~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~  173 (225)
                      ..+++|.+++++++.- .+.--....+....++.+.+.+|. ............+.-+..+++..|. +++.....+-..
T Consensus       213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~  292 (483)
T KOG4341|consen  213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG  292 (483)
T ss_pred             HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence            4688999999999863 221111133445556666665543 2112222222224556666655664 444333334556


Q ss_pred             CCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCc
Q 045865          174 FKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYST  213 (225)
Q Consensus       174 ~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~  213 (225)
                      +..|+.++.+++. ..++.+..++++++++|+.+-+.+++
T Consensus       293 c~~lq~l~~s~~t-~~~d~~l~aLg~~~~~L~~l~l~~c~  331 (483)
T KOG4341|consen  293 CHALQVLCYSSCT-DITDEVLWALGQHCHNLQVLELSGCQ  331 (483)
T ss_pred             hhHhhhhcccCCC-CCchHHHHHHhcCCCceEEEeccccc
Confidence            7788888888774 34556666777778888888888885

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.38  E-value=0.00012  Score=55.52  Aligned_cols=109  Identities=25%  Similarity=0.315  Sum_probs=68.0

Q ss_pred             cCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCC--CCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhc
Q 045865           45 TPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGN--SFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELH  122 (225)
Q Consensus        45 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~--~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  122 (225)
                      ..+..|+.+++.+..++...      .+..+++|++|.++.|  ++....+.....+|+|++++++.|++...-......
T Consensus        40 d~~~~le~ls~~n~gltt~~------~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~  113 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLT------NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK  113 (260)
T ss_pred             ccccchhhhhhhccceeecc------cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh
Confidence            44455666666666554321      3677889999999998  555434444445699999999999886321112455


Q ss_pred             cCCCCceeecCCCCCcH--HHHHHHHhhCCCCCEEeccc
Q 045865          123 NFTNLEYLTLESSSLHI--SLLQSIASIFPSLKNLSMSF  159 (225)
Q Consensus       123 ~l~~L~~l~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~  159 (225)
                      .+.+|..|++..|....  .....++..+++|+.|+-..
T Consensus       114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            66778888888876542  12233333367787775443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=97.31  E-value=1.3e-05  Score=67.09  Aligned_cols=197  Identities=21%  Similarity=0.193  Sum_probs=129.6

Q ss_pred             eEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcC-CCCCEEECCCCCCCh----hhHHhh
Q 045865           22 VIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRL-NNLKMLNLSGNSFNN----SILSSL   96 (225)
Q Consensus        22 v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~~----~~~~~l   96 (225)
                      +..+++.+|++..+..+.....+..+.+|..|++++|.+.........+.+... +.+++|.+..|.++.    .+...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            566788888888877777888888889999999999988754444333444443 677778888887754    344555


Q ss_pred             hcCCCCCEEEcCCCCCCCc---cchhhhc----cCCCCceeecCCCCCcHHHH----HHHHhhCCC-CCEEecccccccc
Q 045865           97 THLSSLRSLNLLWNRLEGS---IDVKELH----NFTNLEYLTLESSSLHISLL----QSIASIFPS-LKNLSMSFCEVNG  164 (225)
Q Consensus        97 ~~l~~L~~L~l~~n~~~~~---~~~~~~~----~l~~L~~l~l~~~~~~~~~~----~~~~~~~~~-L~~L~l~~n~~~~  164 (225)
                      .....++.+++..|.+...   .....+.    ...+++++.+..+.++....    ..+.. .+. +..+++..|.+.+
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~-~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLAS-GESLLRELDLASNKLGD  247 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhc-cchhhHHHHHHhcCcch
Confidence            5667788888888877411   1111222    45678888898888764322    22233 344 6668888887653


Q ss_pred             cccc---CCCCCC-CCCcEEEccCCccccc--hhHHHHHhhcCCCCcEEEccCCcCCCccch
Q 045865          165 VVRG---QGFPHF-KSLEHFDMRFARIALN--TSFLQIIGESMPSLKYLLLSYSTLGTNSSR  220 (225)
Q Consensus       165 ~~~~---~~~~~~-~~L~~l~l~~n~i~~~--~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~  220 (225)
                      ....   ..+... ..++.++++.|.|...  ..+.+.+.. ++.++.+.+++|.+.....+
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~-~~~l~~l~l~~n~l~~~~~~  308 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVS-CRQLEELSLSNNPLTDYGVE  308 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhh-hHHHHHhhcccCccccHHHH
Confidence            3111   133444 5678889998865332  245566666 88889999999988765443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.30  E-value=0.00015  Score=54.92  Aligned_cols=64  Identities=17%  Similarity=0.217  Sum_probs=27.2

Q ss_pred             hccCCCCceeecCCC--CCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCC
Q 045865          121 LHNFTNLEYLTLESS--SLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFA  185 (225)
Q Consensus       121 ~~~l~~L~~l~l~~~--~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n  185 (225)
                      +..+++|+.|.++.|  ++.+.+..-... +|+|+++++++|.|....-..-+..+.+|..|++..|
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~-~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~  126 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEK-APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC  126 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhh-CCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence            334445555555555  333222222222 4555555555555442111112334444555555554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.29  E-value=0.00016  Score=49.53  Aligned_cols=63  Identities=24%  Similarity=0.309  Sum_probs=23.5

Q ss_pred             hhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcC
Q 045865           40 NASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLL  108 (225)
Q Consensus        40 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  108 (225)
                      ...+|.++++|+.+.+.. .+......    .|..++.|+.+.+..+ +.......+..++.++.+.+.
T Consensus         4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~----~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPN-TIKKIGEN----AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             -TTTTTT-TT--EEEETS-T--EE-TT----TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             CHHHHhCCCCCCEEEECC-CeeEeChh----hccccccccccccccc-ccccceeeeeccccccccccc
Confidence            334555555666666553 23332222    3445555555555543 333233344444445555553

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.22  E-value=0.001  Score=54.47  Aligned_cols=55  Identities=15%  Similarity=0.146  Sum_probs=29.2

Q ss_pred             CCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCC
Q 045865           46 PFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWN  110 (225)
Q Consensus        46 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n  110 (225)
                      .+++++.|++++|.+.. .|.     +  .++|++|.+.+|.-...+|..+  ..+|+.|.+.+|
T Consensus        50 ~~~~l~~L~Is~c~L~s-LP~-----L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         50 EARASGRLYIKDCDIES-LPV-----L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HhcCCCEEEeCCCCCcc-cCC-----C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            35667777777665554 221     1  2357777776643322233333  135666666666

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.18  E-value=0.00074  Score=56.82  Aligned_cols=116  Identities=29%  Similarity=0.265  Sum_probs=64.2

Q ss_pred             hcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCC-CC-Ch---hhHHhhhcCCCCCEEEcCCCC-CCCccc
Q 045865           44 FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGN-SF-NN---SILSSLTHLSSLRSLNLLWNR-LEGSID  117 (225)
Q Consensus        44 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~-~l-~~---~~~~~l~~l~~L~~L~l~~n~-~~~~~~  117 (225)
                      ...++.|+.+.+..+.-.....  .......++.|+.|+++++ .. ..   ........+.+|+.++++.+. +. ...
T Consensus       184 ~~~~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is-d~~  260 (482)
T KOG1947|consen  184 LSSCPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT-DIG  260 (482)
T ss_pred             HhhCchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC-chh
Confidence            3346777777776653222111  1113556778888887763 11 11   112233445777777777776 43 222


Q ss_pred             hhhhc-cCCCCceeecCCCC-CcHHHHHHHHhhCCCCCEEecccccc
Q 045865          118 VKELH-NFTNLEYLTLESSS-LHISLLQSIASIFPSLKNLSMSFCEV  162 (225)
Q Consensus       118 ~~~~~-~l~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~  162 (225)
                      ...+. .+++|+.|.+..+. +++.....+...++.|++|+++++..
T Consensus       261 l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  261 LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            21222 35677777776666 56555555554477788888877754

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.09  E-value=6.2e-05  Score=57.70  Aligned_cols=84  Identities=32%  Similarity=0.269  Sum_probs=50.9

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChh-hHHhhhc
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNS-ILSSLTH   98 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~l~~   98 (225)
                      ..|+.|+..|+++.      ..+...+|+.|++|.|+-|.|....|      +..|+.|++|.|..|.|... -...+.+
T Consensus        19 ~~vkKLNcwg~~L~------DIsic~kMp~lEVLsLSvNkIssL~p------l~rCtrLkElYLRkN~I~sldEL~YLkn   86 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLD------DISICEKMPLLEVLSLSVNKISSLAP------LQRCTRLKELYLRKNCIESLDELEYLKN   86 (388)
T ss_pred             HHhhhhcccCCCcc------HHHHHHhcccceeEEeeccccccchh------HHHHHHHHHHHHHhcccccHHHHHHHhc
Confidence            35666777777665      22345567777777777777765322      55666777777777766542 2345556


Q ss_pred             CCCCCEEEcCCCCCCCc
Q 045865           99 LSSLRSLNLLWNRLEGS  115 (225)
Q Consensus        99 l~~L~~L~l~~n~~~~~  115 (225)
                      +++|+.|-+..|...+.
T Consensus        87 lpsLr~LWL~ENPCc~~  103 (388)
T KOG2123|consen   87 LPSLRTLWLDENPCCGE  103 (388)
T ss_pred             CchhhhHhhccCCcccc
Confidence            66666666666665533

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.04  E-value=0.001  Score=56.02  Aligned_cols=140  Identities=24%  Similarity=0.178  Sum_probs=91.4

Q ss_pred             HhcCCCCCEEECCCCCC-Chh-hHHhhhcCCCCCEEEcCCC-CCCCccc---hhhhccCCCCceeecCCCC-CcHHHHHH
Q 045865           72 LSRLNNLKMLNLSGNSF-NNS-ILSSLTHLSSLRSLNLLWN-RLEGSID---VKELHNFTNLEYLTLESSS-LHISLLQS  144 (225)
Q Consensus        72 ~~~l~~L~~L~l~~~~l-~~~-~~~~l~~l~~L~~L~l~~n-~~~~~~~---~~~~~~l~~L~~l~l~~~~-~~~~~~~~  144 (225)
                      ...++.|+.+.+.++.- +.. .......++.|+.|++..+ ......+   ......+.+|+.+++..+. +++.....
T Consensus       184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~  263 (482)
T KOG1947|consen  184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA  263 (482)
T ss_pred             HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence            34578999999888743 321 3345557889999999873 2111111   1134455788899998887 77666677


Q ss_pred             HHhhCCCCCEEeccccc-cccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCC
Q 045865          145 IASIFPSLKNLSMSFCE-VNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYS  212 (225)
Q Consensus       145 ~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n  212 (225)
                      +...+++|+.|.+..+. +++.........++.|+.++++.+..-....+...... +++++.+.+...
T Consensus       264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~-c~~l~~l~~~~~  331 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN-CPNLRELKLLSL  331 (482)
T ss_pred             HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh-Ccchhhhhhhhc
Confidence            76658899999987776 55443333555788899999998853223334444444 888777665544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.76  E-value=0.002  Score=43.99  Aligned_cols=102  Identities=14%  Similarity=0.285  Sum_probs=59.6

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH   98 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~   98 (225)
                      ...++.+.+.. .+.    .+....|..++.++.+.+..+ +......    .|..++.++.+.+.. .+.......+..
T Consensus        11 ~~~l~~i~~~~-~~~----~I~~~~F~~~~~l~~i~~~~~-~~~i~~~----~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen   11 CSNLESITFPN-TIK----KIGENAFSNCTSLKSINFPNN-LTSIGDN----AFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             -TT--EEEETS-T------EE-TTTTTT-TT-SEEEESST-TSCE-TT----TTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             CCCCCEEEECC-Cee----EeChhhccccccccccccccc-cccccee----eeecccccccccccc-cccccccccccc
Confidence            34677788774 344    678888999999999999875 5553333    578888999999976 554444556777


Q ss_pred             CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCC
Q 045865           99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLES  134 (225)
Q Consensus        99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~  134 (225)
                      +.+++.+.+..+ +. .++...+... .++.+.+..
T Consensus        80 ~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   80 CTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             -TTECEEEETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred             cccccccccCcc-cc-EEchhhhcCC-CceEEEECC
Confidence            888999998765 43 4554456665 777777765

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.72  E-value=0.0053  Score=50.41  Aligned_cols=126  Identities=14%  Similarity=0.135  Sum_probs=74.3

Q ss_pred             chhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC-CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCC-CCcHHH
Q 045865           64 VENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL-SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESS-SLHISL  141 (225)
Q Consensus        64 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~-~~~~~~  141 (225)
                      ...+++.++..+.+++.|++++|.+.. +|    .+ .+|+.|.+.++.-...+|. .+  ..+|+.|.+++| .+. .+
T Consensus        40 ~r~~a~~r~~~~~~l~~L~Is~c~L~s-LP----~LP~sLtsL~Lsnc~nLtsLP~-~L--P~nLe~L~Ls~Cs~L~-sL  110 (426)
T PRK15386         40 IRSEITPQIEEARASGRLYIKDCDIES-LP----VLPNELTEITIENCNNLTTLPG-SI--PEGLEKLTVCHCPEIS-GL  110 (426)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCCCCCcc-cC----CCCCCCcEEEccCCCCcccCCc-hh--hhhhhheEccCccccc-cc
Confidence            334445567778999999999998766 34    23 4699999988654435553 22  357899999987 332 22


Q ss_pred             HHHHHhhCCCCCEEeccccccc--cccccCCCCC-----------------C-CCCcEEEccCCccccchhHHHHHhhcC
Q 045865          142 LQSIASIFPSLKNLSMSFCEVN--GVVRGQGFPH-----------------F-KSLEHFDMRFARIALNTSFLQIIGESM  201 (225)
Q Consensus       142 ~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~~-----------------~-~~L~~l~l~~n~i~~~~~~~~~l~~~~  201 (225)
                             .+.|+.|.+..+...  ...|. .+..                 + .+|++|++++|..  . ..|..+   -
T Consensus       111 -------P~sLe~L~L~~n~~~~L~~LPs-sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~--i-~LP~~L---P  176 (426)
T PRK15386        111 -------PESVRSLEIKGSATDSIKNVPN-GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSN--I-ILPEKL---P  176 (426)
T ss_pred             -------ccccceEEeCCCCCcccccCcc-hHhheeccccccccccccccccCCcccEEEecCCCc--c-cCcccc---c
Confidence                   234666666554321  12222 1111                 1 3677777777632  1 223333   2


Q ss_pred             CCCcEEEccCC
Q 045865          202 PSLKYLLLSYS  212 (225)
Q Consensus       202 ~~L~~L~l~~n  212 (225)
                      .+|+.|+++.+
T Consensus       177 ~SLk~L~ls~n  187 (426)
T PRK15386        177 ESLQSITLHIE  187 (426)
T ss_pred             ccCcEEEeccc
Confidence            37778877765

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.66  E-value=0.0002  Score=60.16  Aligned_cols=194  Identities=20%  Similarity=0.130  Sum_probs=128.2

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCC-CCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCCh----hhH
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPF-QQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNN----SIL   93 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~----~~~   93 (225)
                      ...+.+|++++|.++..+.......+... +.+++|.+..|.+.........+.+....+++.+++..|.+..    ..+
T Consensus       114 ~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~  193 (478)
T KOG4308|consen  114 LPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLS  193 (478)
T ss_pred             cccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHh
Confidence            45778899999998865445555555544 6688899999998876666666677789999999999998732    223


Q ss_pred             Hhhh----cCCCCCEEEcCCCCCCCccch----hhhccCCC-CceeecCCCCCcHHHHHHHHhh---C-CCCCEEecccc
Q 045865           94 SSLT----HLSSLRSLNLLWNRLEGSIDV----KELHNFTN-LEYLTLESSSLHISLLQSIASI---F-PSLKNLSMSFC  160 (225)
Q Consensus        94 ~~l~----~l~~L~~L~l~~n~~~~~~~~----~~~~~l~~-L~~l~l~~~~~~~~~~~~~~~~---~-~~L~~L~l~~n  160 (225)
                      ..+.    ...++++|.+.++.+... ..    ..+..... +..+++..|.+.+.....+...   + +.++.++++.|
T Consensus       194 ~~l~~~~~~~~~le~L~L~~~~~t~~-~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n  272 (478)
T KOG4308|consen  194 QALESAASPLSSLETLKLSRCGVTSS-SCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRN  272 (478)
T ss_pred             hhhhhhhcccccHHHHhhhhcCcChH-HHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcC
Confidence            3333    467899999999987622 11    13444455 6669999998875533333222   3 46689999999


Q ss_pred             cccccccc---CCCCCCCCCcEEEccCCccccch--hHHHHHhhcCCCCcEEEccCCcC
Q 045865          161 EVNGVVRG---QGFPHFKSLEHFDMRFARIALNT--SFLQIIGESMPSLKYLLLSYSTL  214 (225)
Q Consensus       161 ~~~~~~~~---~~~~~~~~L~~l~l~~n~i~~~~--~~~~~l~~~~~~L~~L~l~~n~l  214 (225)
                      .++.....   ..+..++.++.+.++.|.+....  .+.+.+.. ...+..+.+.++..
T Consensus       273 si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~-~~~~~~~~l~~~~~  330 (478)
T KOG4308|consen  273 SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALER-KTPLLHLVLGGTGK  330 (478)
T ss_pred             CccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhh-cccchhhhccccCc
Confidence            98754332   25667789999999999653222  23344444 44455555554433

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.13  E-value=0.0031  Score=46.28  Aligned_cols=82  Identities=20%  Similarity=0.195  Sum_probs=44.4

Q ss_pred             CCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhc-cCCCCceeecCCCC-CcHHHHHHHHhhCCCCCE
Q 045865           77 NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELH-NFTNLEYLTLESSS-LHISLLQSIASIFPSLKN  154 (225)
Q Consensus        77 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~  154 (225)
                      .++.+|-+++.|.......+..++.++.|.+.+++..+....+.+. ..++|+.|++++|. |++.....+.+ +++|+.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr~  180 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLRR  180 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhHH
Confidence            4455666666665555556666666666666666544332222222 23466666666543 55444555555 666666


Q ss_pred             Eeccc
Q 045865          155 LSMSF  159 (225)
Q Consensus       155 L~l~~  159 (225)
                      |.+.+
T Consensus       181 L~l~~  185 (221)
T KOG3864|consen  181 LHLYD  185 (221)
T ss_pred             HHhcC
Confidence            65544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.99  E-value=0.0034  Score=46.09  Aligned_cols=82  Identities=20%  Similarity=0.239  Sum_probs=47.9

Q ss_pred             CCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccc-cccccccCCCC-CCCCCcEEEccCCccccchhHHHHHhhcCCC
Q 045865          126 NLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCE-VNGVVRGQGFP-HFKSLEHFDMRFARIALNTSFLQIIGESMPS  203 (225)
Q Consensus       126 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~-~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~  203 (225)
                      .++.++.++..|..+....+.. ++.++.|.+.+|. +.+.... -++ -.++|+.|++++|. .+++.-...+.+ +++
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~-~l~~~~~~L~~L~lsgC~-rIT~~GL~~L~~-lkn  177 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLE-RLGGLAPSLQDLDLSGCP-RITDGGLACLLK-LKN  177 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhc-cchhhhheeccccchhhHHHH-HhcccccchheeeccCCC-eechhHHHHHHH-hhh
Confidence            4666777777766666666666 6677777666664 2222111 222 34567777777664 344444555666 777


Q ss_pred             CcEEEccC
Q 045865          204 LKYLLLSY  211 (225)
Q Consensus       204 L~~L~l~~  211 (225)
                      |+.|.+.+
T Consensus       178 Lr~L~l~~  185 (221)
T KOG3864|consen  178 LRRLHLYD  185 (221)
T ss_pred             hHHHHhcC
Confidence            77666654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.91  E-value=0.004  Score=28.46  Aligned_cols=20  Identities=30%  Similarity=0.330  Sum_probs=15.2

Q ss_pred             CCcEEEccCCcCCCccchhhc
Q 045865          203 SLKYLLLSYSTLGTNSSRILH  223 (225)
Q Consensus       203 ~L~~L~l~~n~l~~~~~~~~~  223 (225)
                      +|+.|++++|+|+ .+|..|.
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTT
T ss_pred             CccEEECCCCcCE-eCChhhc
Confidence            4788888888888 6666664

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.89  E-value=0.028  Score=45.86  Aligned_cols=140  Identities=21%  Similarity=0.219  Sum_probs=83.8

Q ss_pred             hcCCCCCEEECCCCC-CChhhHHhhh-cCCCCCEEEcCCCCCCCccchh-hhccCCCCceeecCCCCCc-HHHHHHHHhh
Q 045865           73 SRLNNLKMLNLSGNS-FNNSILSSLT-HLSSLRSLNLLWNRLEGSIDVK-ELHNFTNLEYLTLESSSLH-ISLLQSIASI  148 (225)
Q Consensus        73 ~~l~~L~~L~l~~~~-l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~l~l~~~~~~-~~~~~~~~~~  148 (225)
                      ..+..|+.|+.+++. +++.....+. +.++|+.+.+..+...+..... .-.+...|+.+++.++... +.....+..+
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~  370 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN  370 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence            456777777776653 3443333343 4678888888887643232211 2234567888888776532 2223334444


Q ss_pred             CCCCCEEeccccc-cccccc---cCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcC
Q 045865          149 FPSLKNLSMSFCE-VNGVVR---GQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTL  214 (225)
Q Consensus       149 ~~~L~~L~l~~n~-~~~~~~---~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l  214 (225)
                      ++.|+.+.++.+. +++..-   ...-.+...|+.+-+++++ ..++.....+.. +++|+++++.+++-
T Consensus       371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p-~i~d~~Le~l~~-c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP-LITDATLEHLSI-CRNLERIELIDCQD  438 (483)
T ss_pred             CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC-CchHHHHHHHhh-Ccccceeeeechhh
Confidence            7888888888775 332211   1122345677888888886 345566666777 88888888877753

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=95.60  E-value=0.0023  Score=29.96  Aligned_cols=21  Identities=29%  Similarity=0.392  Sum_probs=9.8

Q ss_pred             CCCcEEEccCCcCCCccchhh
Q 045865          202 PSLKYLLLSYSTLGTNSSRIL  222 (225)
Q Consensus       202 ~~L~~L~l~~n~l~~~~~~~~  222 (225)
                      ++|+.|+|++|.|++..++.+
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            445555555555555544444

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.91  E-value=0.021  Score=24.26  Aligned_cols=14  Identities=43%  Similarity=0.517  Sum_probs=7.7

Q ss_pred             CCCcEEEccCCcCC
Q 045865          202 PSLKYLLLSYSTLG  215 (225)
Q Consensus       202 ~~L~~L~l~~n~l~  215 (225)
                      ++|+.|+|++|+|+
T Consensus         1 ~~L~~L~l~~n~L~   14 (17)
T PF13504_consen    1 PNLRTLDLSNNRLT   14 (17)
T ss_dssp             TT-SEEEETSS--S
T ss_pred             CccCEEECCCCCCC
Confidence            35777777777776

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.71  E-value=0.034  Score=26.38  Aligned_cols=23  Identities=26%  Similarity=0.379  Sum_probs=17.5

Q ss_pred             CCCCcEEEccCCcCCCccchhhc
Q 045865          201 MPSLKYLLLSYSTLGTNSSRILH  223 (225)
Q Consensus       201 ~~~L~~L~l~~n~l~~~~~~~~~  223 (225)
                      +++|+.|++++|+|+..++..|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            45788889999988877666654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.71  E-value=0.034  Score=26.38  Aligned_cols=23  Identities=26%  Similarity=0.379  Sum_probs=17.5

Q ss_pred             CCCCcEEEccCCcCCCccchhhc
Q 045865          201 MPSLKYLLLSYSTLGTNSSRILH  223 (225)
Q Consensus       201 ~~~L~~L~l~~n~l~~~~~~~~~  223 (225)
                      +++|+.|++++|+|+..++..|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            45788889999988877666654

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=92.55  E-value=0.053  Score=26.35  Aligned_cols=19  Identities=42%  Similarity=0.508  Sum_probs=9.0

Q ss_pred             CCcEEEccCCcCCCccchh
Q 045865          203 SLKYLLLSYSTLGTNSSRI  221 (225)
Q Consensus       203 ~L~~L~l~~n~l~~~~~~~  221 (225)
                      +|+.|+|++|.|.......
T Consensus         3 ~L~~LdL~~N~i~~~G~~~   21 (28)
T smart00368        3 SLRELDLSNNKLGDEGARA   21 (28)
T ss_pred             ccCEEECCCCCCCHHHHHH
Confidence            4455555555554444333

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=87.93  E-value=0.32  Score=26.18  Aligned_cols=12  Identities=42%  Similarity=1.207  Sum_probs=9.6

Q ss_pred             CcccCCCceeec
Q 045865            5 TDCCQWERVECS   16 (225)
Q Consensus         5 ~~~c~~~~~~~~   16 (225)
                      +++|+|.||.|+
T Consensus        32 ~~~C~W~GV~Cd   43 (43)
T PF08263_consen   32 SDPCSWSGVTCD   43 (43)
T ss_dssp             S-CCCSTTEEE-
T ss_pred             CCCeeeccEEeC
Confidence            799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=85.72  E-value=0.5  Score=22.29  Aligned_cols=11  Identities=18%  Similarity=0.295  Sum_probs=6.2

Q ss_pred             CCCcEEEccCC
Q 045865          175 KSLEHFDMRFA  185 (225)
Q Consensus       175 ~~L~~l~l~~n  185 (225)
                      ++|+.|+++.|
T Consensus         2 ~~L~~L~l~~C   12 (26)
T smart00367        2 PNLRELDLSGC   12 (26)
T ss_pred             CCCCEeCCCCC
Confidence            45555555555

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=85.42  E-value=0.59  Score=22.22  Aligned_cols=18  Identities=39%  Similarity=0.396  Sum_probs=12.9

Q ss_pred             CCCcEEEccCCcCCCccch
Q 045865          202 PSLKYLLLSYSTLGTNSSR  220 (225)
Q Consensus       202 ~~L~~L~l~~n~l~~~~~~  220 (225)
                      ++|+.|++++|+|+ .+|+
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            35778888888887 5554

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=84.03  E-value=1.5  Score=37.45  Aligned_cols=91  Identities=22%  Similarity=0.291  Sum_probs=51.6

Q ss_pred             cCCCCceeecCCCCCcHHH-HHHHHhhCCCCCEEecccc--ccccccccCCCCCCCCCcEEEccCCccccc----hhHHH
Q 045865          123 NFTNLEYLTLESSSLHISL-LQSIASIFPSLKNLSMSFC--EVNGVVRGQGFPHFKSLEHFDMRFARIALN----TSFLQ  195 (225)
Q Consensus       123 ~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~n--~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~----~~~~~  195 (225)
                      +.+.+..+++++|++.... ...+....|+|..|+|++|  .+........++.+ .|+.|-+.+|++..+    .+...
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l-~Leel~l~GNPlc~tf~~~s~yv~  294 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL-PLEELVLEGNPLCTTFSDRSEYVS  294 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC-CHHHeeecCCccccchhhhHHHHH
Confidence            4567778888888865221 1233333789999999998  33211111123333 488899999976332    23334


Q ss_pred             HHhhcCCCCcEEEccCCcCCC
Q 045865          196 IIGESMPSLKYLLLSYSTLGT  216 (225)
Q Consensus       196 ~l~~~~~~L~~L~l~~n~l~~  216 (225)
                      ++....|+|.  .|.|..+..
T Consensus       295 ~i~~~FPKL~--~LDG~ev~~  313 (585)
T KOG3763|consen  295 AIRELFPKLL--RLDGVEVQP  313 (585)
T ss_pred             HHHHhcchhe--eecCcccCc
Confidence            4444477664  444555543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=83.62  E-value=0.034  Score=42.06  Aligned_cols=81  Identities=19%  Similarity=0.083  Sum_probs=38.0

Q ss_pred             ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCC
Q 045865           21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS  100 (225)
Q Consensus        21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~  100 (225)
                      +++.||++.+++-     -...-|+.++.+..|+++.|.+.. .|.    .++.+..++.+++..|..+. .|.++...+
T Consensus        43 r~tvld~~s~r~v-----n~~~n~s~~t~~~rl~~sknq~~~-~~~----d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~  111 (326)
T KOG0473|consen   43 RVTVLDLSSNRLV-----NLGKNFSILTRLVRLDLSKNQIKF-LPK----DAKQQRETVNAASHKNNHSQ-QPKSQKKEP  111 (326)
T ss_pred             eeeeehhhhhHHH-----hhccchHHHHHHHHHhccHhhHhh-Chh----hHHHHHHHHHHHhhccchhh-CCccccccC
Confidence            4555555555542     112223334445555555555443 222    34444445555555554443 444555555


Q ss_pred             CCCEEEcCCCCC
Q 045865          101 SLRSLNLLWNRL  112 (225)
Q Consensus       101 ~L~~L~l~~n~~  112 (225)
                      .+++++.-.+.+
T Consensus       112 ~~k~~e~k~~~~  123 (326)
T KOG0473|consen  112 HPKKNEQKKTEF  123 (326)
T ss_pred             CcchhhhccCcc
Confidence            555555555544

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=82.34  E-value=0.053  Score=41.06  Aligned_cols=94  Identities=12%  Similarity=0.062  Sum_probs=63.7

Q ss_pred             hcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCC
Q 045865           97 THLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKS  176 (225)
Q Consensus        97 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  176 (225)
                      ........||++.|.+. .+.. .++.++.+..++++.|.+. ..|....+ ...+..+.+..|+.. ..|. .++..+.
T Consensus        39 ~~~kr~tvld~~s~r~v-n~~~-n~s~~t~~~rl~~sknq~~-~~~~d~~q-~~e~~~~~~~~n~~~-~~p~-s~~k~~~  112 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLV-NLGK-NFSILTRLVRLDLSKNQIK-FLPKDAKQ-QRETVNAASHKNNHS-QQPK-SQKKEPH  112 (326)
T ss_pred             hccceeeeehhhhhHHH-hhcc-chHHHHHHHHHhccHhhHh-hChhhHHH-HHHHHHHHhhccchh-hCCc-cccccCC
Confidence            34556677787777765 4443 6677778888888888765 44555555 566677777777765 6676 8888888


Q ss_pred             CcEEEccCCccccchhHHHHHh
Q 045865          177 LEHFDMRFARIALNTSFLQIIG  198 (225)
Q Consensus       177 L~~l~l~~n~i~~~~~~~~~l~  198 (225)
                      ++++++..+  .+...+....+
T Consensus       113 ~k~~e~k~~--~~~~~~~~~v~  132 (326)
T KOG0473|consen  113 PKKNEQKKT--EFFRKLFGFVW  132 (326)
T ss_pred             cchhhhccC--cchHHHHhHhh
Confidence            999998888  44444444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  100 bits (252), Expect = 1e-24
 Identities = 51/221 (23%), Positives = 91/221 (41%), Gaps = 29/221 (13%)

Query: 3   GATDCCQWERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAG 62
              + C ++ V C +   +V ++DLS          +++SL      LESL L+ + I G
Sbjct: 35  SNKNPCTFDGVTCRD--DKVTSIDLSSKPLNVGFSAVSSSLL-SLTGLESLFLSNSHING 91

Query: 63  CVENEGIERLSRLNNLKMLNLSGNSFNNSI--LSSLTHLSSLRSLNLLWNRLEGSIDVKE 120
                 +       +L  L+LS NS +  +  L+SL   S L+ LN+  N L+    V  
Sbjct: 92  -----SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSG 146

Query: 121 LHNFTNLEYLTLESSSLHISLLQSIASI--FPSLKNLSMSFCEVNGVVRGQGFPHFKSLE 178
                +LE L L ++S+  + +           LK+L++S  +++G V         +LE
Sbjct: 147 GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV---DVSRCVNLE 203

Query: 179 HFDMRFARIALNTSFLQIIGE-----SMPSLKYLLLSYSTL 214
             D+         S               +L++L +S + L
Sbjct: 204 FLDV---------SSNNFSTGIPFLGDCSALQHLDISGNKL 235

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.8 bits (182), Expect = 2e-15
 Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 4/138 (2%)

Query: 46  PFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSL 105
           P + L+ L L +NK  G + +           L  L+LSGN F  ++       S L SL
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACD---TLTGLDLSGNHFYGAVPPFFGSCSLLESL 323

Query: 106 NLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGV 165
            L  N   G + +  L     L+ L L  +     L +S+ ++  SL  L +S    +G 
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383

Query: 166 V-RGQGFPHFKSLEHFDM 182
           +          +L+   +
Sbjct: 384 ILPNLCQNPKNTLQELYL 401

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 72.6 bits (179), Expect = 5e-15
 Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 11/165 (6%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
              LE LD++ N  +      GI  L   + L+ L++SGN  +     +++  + L+ LN
Sbjct: 199 CVNLEFLDVSSNNFST-----GIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253

Query: 107 LLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVV 166
           +  N+  G I         +L+YL+L  +     +   ++    +L  L +S     G V
Sbjct: 254 ISSNQFVGPIP---PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310

Query: 167 RGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
               F     LE   +       +          M  LK L LS+
Sbjct: 311 -PPFFGSCSLLESLALSSNN--FSGELPMDTLLKMRGLKVLDLSF 352

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.5 bits (176), Expect = 1e-14
 Identities = 39/192 (20%), Positives = 73/192 (38%), Gaps = 18/192 (9%)

Query: 25  LDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLS 84
           L++S        +    S       LE LDL+ N I+G               LK L +S
Sbjct: 131 LNVSSNT---LDFPGKVSGGLKLNSLEVLDLSANSISGANVVG-WVLSDGCGELKHLAIS 186

Query: 85  GNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQS 144
           GN  +  +   ++   +L  L++  N     I    L + + L++L +  + L     ++
Sbjct: 187 GNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRA 242

Query: 145 IASIFPSLKNLSMSFCEVNGVVRGQGFP--HFKSLEHFDMRFARIALNTSFLQIIGESMP 202
           I++    LK L++S  +  G       P    KSL++  +   +          +  +  
Sbjct: 243 IST-CTELKLLNISSNQFVG-----PIPPLPLKSLQYLSLAENK--FTGEIPDFLSGACD 294

Query: 203 SLKYLLLSYSTL 214
           +L  L LS +  
Sbjct: 295 TLTGLDLSGNHF 306

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.6 bits (140), Expect = 5e-10
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 41  ASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSI-LSSLTHL 99
             L      L  LDL+ N   G V           + L+ L LS N+F+  + + +L  +
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPF----FGSCSLLESLALSSNNFSGELPMDTLLKM 342

Query: 100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIA-SIFPSLKNLSMS 158
             L+ L+L +N   G +     +   +L  L L S++    +L ++  +   +L+ L + 
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402

Query: 159 FCEVNG 164
                G
Sbjct: 403 NNGFTG 408

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.6 bits (140), Expect = 6e-10
 Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 6/113 (5%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
                  ++T     G              ++  L++S N  +  I   +  +  L  LN
Sbjct: 607 LSTRNPCNITSRVYGGHTSPT----FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662

Query: 107 LLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSF 159
           L  N + GSI   E+ +   L  L L S+ L   + Q+++++   L  + +S 
Sbjct: 663 LGHNDISGSIP-DEVGDLRGLNILDLSSNKLDGRIPQAMSAL-TMLTEIDLSN 713

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.8 bits (138), Expect = 1e-09
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 6/110 (5%)

Query: 49  QLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLL 108
           +L SL L+ N ++G + +     L  L+ L+ L L  N     I   L ++ +L +L L 
Sbjct: 419 ELVSLHLSFNYLSGTIPSS----LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 109 WNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMS 158
           +N L G I    L N TNL +++L ++ L   + + I  +  +L  L +S
Sbjct: 475 FNDLTGEIP-SGLSNCTNLNWISLSNNRLTGEIPKWIGRL-ENLAILKLS 522

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.8 bits (125), Expect = 4e-08
 Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 6/114 (5%)

Query: 45  TPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRS 104
            P   L+ L L  N   G +       LS  + L  L+LS N  + +I SSL  LS LR 
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPT----LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446

Query: 105 LNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMS 158
           L L  N LEG I  +EL     LE L L+ + L   +   +++   +L  +S+S
Sbjct: 447 LKLWLNMLEGEIP-QELMYVKTLETLILDFNDLTGEIPSGLSN-CTNLNWISLS 498

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 48  QQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNL 107
             L  + L+ N++ G +       + RL NL +L LS NSF+ +I + L    SL  L+L
Sbjct: 490 TNLNWISLSNNRLTGEIPKW----IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545

Query: 108 LWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSF 159
             N   G+I    +   +        +   ++ +               + F
Sbjct: 546 NTNLFNGTIP-AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.1 bits (118), Expect = 4e-07
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 48  QQLESLDLTQNKIAGCVENEGI-ERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
             L  L+L  N I+G      I + +  L  L +L+LS N  +  I  +++ L+ L  ++
Sbjct: 656 PYLFILNLGHNDISG-----SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710

Query: 107 LLWNRLEGSI-DVKELHNFTNLEY 129
           L  N L G I ++ +   F   ++
Sbjct: 711 LSNNNLSGPIPEMGQFETFPPAKF 734

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 9/186 (4%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98
           ++++ F  F  L+ LDLT   +     +E    L  L+ LK L LS N F N    S ++
Sbjct: 269 ISSNTFHCFSGLQELDLTATHL-----SELPSGLVGLSTLKKLVLSANKFENLCQISASN 323

Query: 99  LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIA-SIFPSLKNLSM 157
             SL  L++  N     +    L N  NL  L L    +  S   ++       L++L++
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

Query: 158 SFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTN 217
           S+ E   +     F     LE  D+ F R+ +  +      +++  LK L LS+S L  +
Sbjct: 384 SYNEPLSLKTE-AFKECPQLELLDLAFTRLKVKDAQSPF--QNLHLLKVLNLSHSLLDIS 440

Query: 218 SSRILH 223
           S ++  
Sbjct: 441 SEQLFD 446

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.0 bits (172), Expect = 4e-14
 Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 7/176 (3%)

Query: 38  YLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILS--S 95
            L     + F  L  L +  N     +       L  L NL+ L+LS +    S      
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGC---LENLENLRELDLSHDDIETSDCCNLQ 371

Query: 96  LTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNL 155
           L +LS L+SLNL +N    S+  +       LE L L  + L +   QS       LK L
Sbjct: 372 LRNLSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430

Query: 156 SMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
           ++S   ++       F    +L+H +++               +++  L+ L+LS+
Sbjct: 431 NLSHSLLDISSEQL-FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 30/174 (17%), Positives = 61/174 (35%), Gaps = 9/174 (5%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98
           +  + F+    L  LDLT+ +I   +  +        + L  L L+ N       ++L+ 
Sbjct: 48  IQNTTFSRLINLTFLDLTRCQIYW-IHEDT---FQSQHRLDTLVLTANPLIFMAETALSG 103

Query: 99  LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMS 158
             +L+ L  +   +  SID   LHN   LE L L S+ +    L         LK L   
Sbjct: 104 PKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP-TEKLKVLDFQ 161

Query: 159 FCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYS 212
              ++  +  +     +   +  +      +  + ++         + L    +
Sbjct: 162 NNAIHY-LSKEDMSSLQQATNLSLNLNGNDI--AGIEPGAFDSAVFQSLNFGGT 212

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 37/174 (21%), Positives = 61/174 (35%), Gaps = 11/174 (6%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98
           L    F    QLE LDL   ++              L+ LK+LNLS +  + S       
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSP---FQNLHLLKVLNLSHSLLDISSEQLFDG 447

Query: 99  LSSLRSLNLLWNRLEGSIDVKE--LHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLS 156
           L +L+ LNL  N        K   L     LE L L    L  S+ Q   +    + ++ 
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS-SIDQHAFTSLKMMNHVD 506

Query: 157 MSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLS 210
           +S   +          H K + + ++    I   +  L  +   +   + + L 
Sbjct: 507 LSHNRLTSSSIEA-LSHLKGI-YLNLASNHI---SIILPSLLPILSQQRTINLR 555

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.3 bits (139), Expect = 7e-10
 Identities = 34/204 (16%), Positives = 64/204 (31%), Gaps = 29/204 (14%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103
           F    +L++L LT N +    E      LS    LK L       ++     L +  +L 
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAETA----LSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 104 SLNLLWNRLEG-----------------------SIDVKELHNFTNLEYLTLESSSLHIS 140
           SL L  N +                          +  +++ +      L+L  +   I+
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192

Query: 141 LLQSIASIFPSLKNLSMSFCEVNGVV-RGQGFPHFKSLEHFDMRFARIALNTSFLQIIGE 199
            ++  A      ++L+    +   V+ +G      +SL            + S     G 
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD-EDISPAVFEGL 251

Query: 200 SMPSLKYLLLSYSTLGTNSSRILH 223
              S++ + L        SS   H
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFH 275

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 33/184 (17%), Positives = 66/184 (35%), Gaps = 6/184 (3%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98
                 +  Q L               +  +       +++ +NL  + F N   ++   
Sbjct: 219 FKGLKNSTIQSLWLGTFEDMDDED--ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC 276

Query: 99  LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMS 158
            S L+ L+L    L   +    L   + L+ L L ++    +L Q  AS FPSL +LS+ 
Sbjct: 277 FSGLQELDLTATHLS-ELP-SGLVGLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSIK 333

Query: 159 FCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNS 218
                  +      + ++L   D+    I  +      +  ++  L+ L LSY+   +  
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL-RNLSHLQSLNLSYNEPLSLK 392

Query: 219 SRIL 222
           +   
Sbjct: 393 TEAF 396

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 6/137 (4%)

Query: 75  LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLES 134
            N+ + L  S N       ++ + L +L  L+L   ++   I      +   L+ L L +
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTA 90

Query: 135 SSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFL 194
           + L   + ++  S   +LK+L      ++  +      + K+LE   +    I   +S  
Sbjct: 91  NPLI-FMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHI---SSIK 145

Query: 195 QIIGESMPSLKYLLLSY 211
              G     LK L    
Sbjct: 146 LPKGFPTEKLKVLDFQN 162

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 24/175 (13%), Positives = 56/175 (32%), Gaps = 9/175 (5%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98
           ++       + LESL L  N I+     +          LK+L+   N+ +      ++ 
Sbjct: 120 IDFIPLHNQKTLESLYLGSNHISSIKLPK----GFPTEKLKVLDFQNNAIHYLSKEDMSS 175

Query: 99  LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIA-SIFPSLKNLSM 157
           L    +L+L  N  + +       +    + L    +   + + + +  S   SL   + 
Sbjct: 176 LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTF 235

Query: 158 SFCEVNGVVRGQ-GFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
              +   +           S+E  +++        +           L+ L L+ 
Sbjct: 236 EDMDDEDISPAVFEGLCEMSVESINLQKHYF---FNISSNTFHCFSGLQELDLTA 287

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.2 bits (123), Expect = 7e-08
 Identities = 22/135 (16%), Positives = 47/135 (34%), Gaps = 7/135 (5%)

Query: 50  LESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLW 109
            E L+ + N +            SRL NL  L+L+          +      L +L L  
Sbjct: 35  TECLEFSFNVLPTIQNTT----FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 110 NRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQ 169
           N L   +    L     L++L    + +       + +   +L++L +    ++ +   +
Sbjct: 91  NPLI-FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ-KTLESLYLGSNHISSIKLPK 148

Query: 170 GFPHFKSLEHFDMRF 184
                + L+  D + 
Sbjct: 149 -GFPTEKLKVLDFQN 162

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 38  YLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 97
            ++   FT  + +  +DL+ N++      E +  L  +     LNL+ N  +  + S L 
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRLTS-SSIEALSHLKGI----YLNLASNHISIILPSLLP 544

Query: 98  HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSS 136
            LS  R++NL  N L+ +        +       LE + 
Sbjct: 545 ILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTE 583

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.8 bits (174), Expect = 2e-14
 Identities = 34/178 (19%), Positives = 67/178 (37%), Gaps = 5/178 (2%)

Query: 38  YLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 97
            + +++FT    L+ L L+ +  +              + L +LNL+ N  +     + +
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402

Query: 98  HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSM 157
            L  L  L+L  N +   +  +E     N+  + L  +        S A   PSL+ L +
Sbjct: 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL-VPSLQRLML 461

Query: 158 SFCEVNGVVRGQG-FPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTL 214
               +  V      F   ++L   D+    I    +    + E +  L+ L L ++ L
Sbjct: 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNI---ANINDDMLEGLEKLEILDLQHNNL 516

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.6 bits (163), Expect = 5e-13
 Identities = 37/187 (19%), Positives = 69/187 (36%), Gaps = 7/187 (3%)

Query: 37  WYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL 96
             L   L      L+ L+L  N+++   +       +   NL  L+L  NS      +  
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKT----FAFCTNLTELHLMSNSIQKIKNNPF 117

Query: 97  THLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIF-PSLKNL 155
               +L +L+L  N L  +          NL+ L L ++ +     + +      SLK L
Sbjct: 118 VKQKNLITLDLSHNGLSSTKL-GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176

Query: 156 SMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLG 215
            +S  ++     G  F     L    +   ++  + +    +  +  S++ L LS S L 
Sbjct: 177 ELSSNQIKEFSPG-CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 216 TNSSRIL 222
           T S+   
Sbjct: 236 TTSNTTF 242

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.6 bits (158), Expect = 3e-12
 Identities = 41/188 (21%), Positives = 75/188 (39%), Gaps = 10/188 (5%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98
           L A+ FT + QL SLD+  N I+            +L  LK+LNL  N  +     +   
Sbjct: 40  LPAANFTRYSQLTSLDVGFNTISKLEPEL----CQKLPMLKVLNLQHNELSQLSDKTFAF 95

Query: 99  LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMS 158
            ++L  L+L+ N ++   +        NL  L L  + L  + L +      +L+ L +S
Sbjct: 96  CTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLSSTKLGTQVQ-LENLQELLLS 153

Query: 159 FCEVNGVVRGQ-GFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTN 217
             ++  +   +       SL+  ++   +I     F      ++  L  L L+   LG +
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLELSSNQI---KEFSPGCFHAIGRLFGLFLNNVQLGPS 210

Query: 218 SSRILHQG 225
            +  L   
Sbjct: 211 LTEKLCLE 218

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 35/180 (19%), Positives = 67/180 (37%), Gaps = 13/180 (7%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98
           L  + F     L+ L L +  +     +        L NL +L+LS N+  N     L  
Sbjct: 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSP--FQPLRNLTILDLSNNNIANINDDMLEG 502

Query: 99  LSSLRSLNL-------LWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPS 151
           L  L  L+L       LW        +  L   ++L  L LES+     +   +      
Sbjct: 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFE 561

Query: 152 LKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
           LK + +    +N +     F +  SL+  +++     + +   ++ G +  +L  L + +
Sbjct: 562 LKIIDLGLNNLNTLPASV-FNNQVSLKSLNLQKNL--ITSVEKKVFGPAFRNLTELDMRF 618

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.0 bits (146), Expect = 8e-11
 Identities = 36/165 (21%), Positives = 61/165 (36%), Gaps = 8/165 (4%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
              +  L+LT N++            +R + L  L++  N+ +         L  L+ LN
Sbjct: 24  PTNITVLNLTHNQLRRLPAAN----FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN 79

Query: 107 LLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVV 166
           L  N L    D K     TNL  L L S+S+             +L  L +S   ++   
Sbjct: 80  LQHNELSQLSD-KTFAFCTNLTELHLMSNSIQKIKNNPFVK-QKNLITLDLSHNGLSSTK 137

Query: 167 RGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
            G      ++L+   +   +I       ++   +  SLK L LS 
Sbjct: 138 LG-TQVQLENLQELLLSNNKIQ-ALKSEELDIFANSSLKKLELSS 180

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.2 bits (131), Expect = 7e-09
 Identities = 35/190 (18%), Positives = 71/190 (37%), Gaps = 16/190 (8%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98
            +   F    +L  L L   ++   +  E +       +++ L+LS +  + +  ++   
Sbjct: 186 FSPGCFHAIGRLFGLFLNNVQLGPSLT-EKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244

Query: 99  L--SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLS 156
           L  ++L  L+L +N L    +         LEY  LE +++      S+  +  +++ L+
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGN-DSFAWLPQLEYFFLEYNNIQHLFSHSLHGL-FNVRYLN 302

Query: 157 MSFCEVNGVVRGQG--------FPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLL 208
           +        +            F   K LEH +M    I         +   + +LKYL 
Sbjct: 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI---PGIKSNMFTGLINLKYLS 359

Query: 209 LSYSTLGTNS 218
           LS S     +
Sbjct: 360 LSNSFTSLRT 369

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.2 bits (131), Expect = 7e-09
 Identities = 35/183 (19%), Positives = 64/183 (34%), Gaps = 19/183 (10%)

Query: 46  PFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSL 105
            +  L  LDL+ N +     +      + L  L+   L  N+  +    SL  L ++R L
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDS----FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 106 NLLWNRLEGS--------IDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSM 157
           NL  +  + S        ID         LE+L +E + +             +LK LS+
Sbjct: 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG-LINLKYLSL 360

Query: 158 SFCEVNGV-VRGQGFPHF--KSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTL 214
           S    +   +  + F       L   ++   +I   +         +  L+ L L  + +
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI---SKIESDAFSWLGHLEVLDLGLNEI 417

Query: 215 GTN 217
           G  
Sbjct: 418 GQE 420

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 25/118 (21%), Positives = 37/118 (31%), Gaps = 8/118 (6%)

Query: 25  LDLSYIY----SGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKM 80
           LDL +          +             L  L+L  N                L  LK+
Sbjct: 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV----FKDLFELKI 564

Query: 81  LNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLH 138
           ++L  N+ N    S   +  SL+SLNL  N +           F NL  L +  +   
Sbjct: 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 20/128 (15%), Positives = 45/128 (35%), Gaps = 6/128 (4%)

Query: 38  YLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 97
            +   +F    +L+ +DL  N +     +      +   +LK LNL  N   +       
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASV----FNNQVSLKSLNLQKNLITSVEKKVFG 605

Query: 98  H-LSSLRSLNLLWNRLEGSID-VKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNL 155
               +L  L++ +N  + + + +    N+ N  +  +   S H             ++  
Sbjct: 606 PAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLF 665

Query: 156 SMSFCEVN 163
             S C+ +
Sbjct: 666 DTSSCKDS 673

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.1 bits (167), Expect = 2e-14
 Identities = 25/142 (17%), Positives = 57/142 (40%), Gaps = 12/142 (8%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
              ++ L +                +S L+NL+ L + G    +  + +L+ L+SL  L+
Sbjct: 65  AHNIKDLTINNIHA------TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 107 LLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVV 166
           +  +  +    + +++    +  + L S +  I+ +  + +  P LK+L++ F  V+   
Sbjct: 119 ISHSAHD-DSILTKINTLPKVNSIDL-SYNGAITDIMPLKT-LPELKSLNIQFDGVHDY- 174

Query: 167 RGQGFPHFKSLEHFDMRFARIA 188
             +G   F  L         I 
Sbjct: 175 --RGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.4 bits (155), Expect = 9e-13
 Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 9/117 (7%)

Query: 49  QLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLL 108
            LE L +    +     ++ I  LS L +L +L++S ++ ++SIL+ +  L  + S++L 
Sbjct: 89  NLERLRIMGKDV----TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 109 WNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGV 165
           +N      D+  L     L+ L ++     +   + I   FP L  L      + G 
Sbjct: 145 YNGAIT--DIMPLKTLPELKSLNIQFD--GVHDYRGIED-FPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 8/91 (8%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103
            +    L  LD++ +      ++  + +++ L  +  ++LS N     I   L  L  L+
Sbjct: 108 LSGLTSLTLLDISHSAH----DDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELK 162

Query: 104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLES 134
           SLN+ ++ +    D + + +F  L  L   S
Sbjct: 163 SLNIQFDGVH---DYRGIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 24/165 (14%), Positives = 63/165 (38%), Gaps = 18/165 (10%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
           F+   +  L Q+  A   E +       +N+L  + L+  +  +  L+ + +  +++ L 
Sbjct: 22  FKAYLNGLLGQSSTANITEAQ-------MNSLTYITLANINVTD--LTGIEYAHNIKDLT 72

Query: 107 LLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVV 166
           +         +   +   +NLE L +    +    + +++ +  SL  L +S    +  +
Sbjct: 73  INNIHAT---NYNPISGLSNLERLRIMGKDVTSDKIPNLSGL-TSLTLLDISHSAHDDSI 128

Query: 167 RGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
                     +   D+ +     +   L    +++P LK L + +
Sbjct: 129 -LTKINTLPKVNSIDLSYNGAITDIMPL----KTLPELKSLNIQF 168

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.1 bits (167), Expect = 1e-13
 Identities = 35/169 (20%), Positives = 61/169 (36%), Gaps = 8/169 (4%)

Query: 42  SLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 101
           + F   ++L+ LD   + +    E         L  L  L++S  +           L+S
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSA---FLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 102 LRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCE 161
           L +L +  N  + +       N TNL +L L    L   +   +      L+ L+MS   
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNN 508

Query: 162 VNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLS 210
           +  +     +    SL   D  F RI    +   I+     SL +  L+
Sbjct: 509 LLFLDSSH-YNQLYSLSTLDCSFNRI---ETSKGILQHFPKSLAFFNLT 553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 38/192 (19%), Positives = 79/192 (41%), Gaps = 16/192 (8%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSL 96
           L +  F+ F +L+ LDL++ +I      E IE      L++L  L L+GN   +    S 
Sbjct: 47  LKSYSFSNFSELQWLDLSRCEI------ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF 100

Query: 97  THLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLS 156
           + L+SL +L  +  +L  S++   +     L+ L +  + +H   L +  S   +L ++ 
Sbjct: 101 SGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 159

Query: 157 MSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGES---MPSLKYLLLSYST 213
           +S+  +  +         + L         + ++ + +  I +       L  L L  + 
Sbjct: 160 LSYNYIQTITVN----DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNF 215

Query: 214 LGTNSSRILHQG 225
             +N  +   Q 
Sbjct: 216 NSSNIMKTCLQN 227

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.4 bits (147), Expect = 5e-11
 Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 7/166 (4%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
               +++DL+ N +            S  + L+ L+LS          +   L  L +L 
Sbjct: 31  PSSTKNIDLSFNPLKILKSYS----FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI 86

Query: 107 LLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVV 166
           L  N ++ S         T+LE L    + L       I     +LK L+++   ++   
Sbjct: 87  LTGNPIQ-SFSPGSFSGLTSLENLVAVETKLASLESFPIGQ-LITLKKLNVAHNFIHSCK 144

Query: 167 RGQGFPHFKSLEHFDMRFARI-ALNTSFLQIIGESMPSLKYLLLSY 211
               F +  +L H D+ +  I  +  + LQ + E+      L +S 
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 13/200 (6%)

Query: 25  LDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLS 84
           LDLS            + L T    L  LDL+ N                L  L+ L+  
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTN--SLRHLDLSFNGA-----IIMSANFMGLEELQHLDFQ 407

Query: 85  GNSFNNSI-LSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQ 143
            ++       S+   L  L  L++ +   +   D       T+L  L +  +S   + L 
Sbjct: 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD-GIFLGLTSLNTLKMAGNSFKDNTLS 466

Query: 144 SIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPS 203
           ++ +   +L  L +S C++  +  G  F     L+  +M    +             + S
Sbjct: 467 NVFANTTNLTFLDLSKCQLEQISWGV-FDTLHRLQLLNMSHNNL---LFLDSSHYNQLYS 522

Query: 204 LKYLLLSYSTLGTNSSRILH 223
           L  L  S++ + T+   + H
Sbjct: 523 LSTLDCSFNRIETSKGILQH 542

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.3 bits (139), Expect = 6e-10
 Identities = 36/198 (18%), Positives = 66/198 (33%), Gaps = 35/198 (17%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGN--------SFNN 90
           L          L+SL LT NK           +   L +L  L+LS N        S+++
Sbjct: 319 LKQFPTLDLPFLKSLTLTMNKG------SISFKKVALPSLSYLDLSRNALSFSGCCSYSD 372

Query: 91  SILSSLTHL-----------------SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLE 133
              +SL HL                   L+ L+   + L+   +     +   L YL + 
Sbjct: 373 LGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432

Query: 134 SSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSF 193
            ++        I     SL  L M+            F +  +L   D+   ++      
Sbjct: 433 YTNTK-IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL---EQI 488

Query: 194 LQIIGESMPSLKYLLLSY 211
              + +++  L+ L +S+
Sbjct: 489 SWGVFDTLHRLQLLNMSH 506

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.3 bits (139), Expect = 7e-10
 Identities = 36/188 (19%), Positives = 65/188 (34%), Gaps = 21/188 (11%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98
            +   F     + ++ L    I      + +E + +    + L++               
Sbjct: 276 DDIVKFHCLANVSAMSLAGVSI------KYLEDVPKHFKWQSLSIIRCQLKQF---PTLD 326

Query: 99  LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIF---PSLKNL 155
           L  L+SL L  N+   S          +L YL L  S   +S     +       SL++L
Sbjct: 327 LPFLKSLTLTMNKGSISFK---KVALPSLSYLDL--SRNALSFSGCCSYSDLGTNSLRHL 381

Query: 156 SMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLG 215
            +SF     +     F   + L+H D + + +   T F      S+  L YL +SY+   
Sbjct: 382 DLSFNGAIIM--SANFMGLEELQHLDFQHSTLKRVTEF--SAFLSLEKLLYLDISYTNTK 437

Query: 216 TNSSRILH 223
            +   I  
Sbjct: 438 IDFDGIFL 445

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 32/192 (16%), Positives = 68/192 (35%), Gaps = 8/192 (4%)

Query: 37  WYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSIL-SS 95
              +   F+    LE+L   + K+A          + +L  LK LN++ N  ++  L + 
Sbjct: 93  QSFSPGSFSGLTSLENLVAVETKLASLESFP----IGQLITLKKLNVAHNFIHSCKLPAY 148

Query: 96  LTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEY--LTLESSSLHISLLQSIASIFPSLK 153
            ++L++L  ++L +N ++ +I V +L          L+L+ S   I  +Q  A     L 
Sbjct: 149 FSNLTNLVHVDLSYNYIQ-TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH 207

Query: 154 NLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYST 213
            L++     +  +      +   L    +         +        M  L  + +    
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267

Query: 214 LGTNSSRILHQG 225
           L   +       
Sbjct: 268 LTYTNDFSDDIV 279

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 28/167 (16%), Positives = 66/167 (39%), Gaps = 16/167 (9%)

Query: 49  QLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLL 108
           +L  L L  N  +  +    ++ L+ L+  +++        N  +   + +  L  + + 
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264

Query: 109 WNRLEG----SIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNG 164
             RL      S D+ + H   N+  ++L  + + I  L+ +       ++LS+  C++  
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSL--AGVSIKYLEDVPK-HFKWQSLSIIRCQLKQ 321

Query: 165 VVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
                       L+   +   + +++   +     ++PSL YL LS 
Sbjct: 322 FP----TLDLPFLKSLTLTMNKGSISFKKV-----ALPSLSYLDLSR 359

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 29/184 (15%), Positives = 61/184 (33%), Gaps = 11/184 (5%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98
           +    +     L +L LT N I            S L +L+ L        +     +  
Sbjct: 71  IEDKAWHGLHHLSNLILTGNPIQSFSPGS----FSGLTSLENLVAVETKLASLESFPIGQ 126

Query: 99  LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLES---SSLHISLLQSIASIFPSLKNL 155
           L +L+ LN+  N +          N TNL ++ L      ++ ++ LQ +        +L
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186

Query: 156 SMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLG 215
            MS   ++ +           L    +R      +++ ++   +++  L    L      
Sbjct: 187 DMSLNPIDFI--QDQAFQGIKLHELTLRGNF--NSSNIMKTCLQNLAGLHVHRLILGEFK 242

Query: 216 TNSS 219
              +
Sbjct: 243 DERN 246

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 33/187 (17%), Positives = 66/187 (35%), Gaps = 20/187 (10%)

Query: 39  LNASLFTPFQQL--ESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL 96
              S+      +  +   LT          + I +   L N+  ++L+G S     L  +
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFS----DDIVKFHCLANVSAMSLAGVSIKY--LEDV 303

Query: 97  THLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLS 156
                 +SL+++  +L+         +   L+ LTL  +    S+     +  PSL  L 
Sbjct: 304 PKHFKWQSLSIIRCQLKQF----PTLDLPFLKSLTL--TMNKGSISFKKVA-LPSLSYLD 356

Query: 157 MSFCEVNGVVRGQ-GFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLG 215
           +S   ++             SL H D+ F    + ++        +  L++L   +STL 
Sbjct: 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFM----GLEELQHLDFQHSTLK 412

Query: 216 TNSSRIL 222
             +    
Sbjct: 413 RVTEFSA 419

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 16/99 (16%), Positives = 37/99 (37%), Gaps = 4/99 (4%)

Query: 38  YLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 97
            ++  +F    +L+ L+++ N +     +      ++L +L  L+ S N    S      
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLFLDSSH----YNQLYSLSTLDCSFNRIETSKGILQH 542

Query: 98  HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSS 136
              SL   NL  N +    + ++   +   +   L +  
Sbjct: 543 FPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVE 581

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 67.2 bits (165), Expect = 2e-13
 Identities = 37/168 (22%), Positives = 73/168 (43%), Gaps = 14/168 (8%)

Query: 3   GATDCCQ--WERVECSNTT--GRVIALDLSYIY-SGEYSWYLNASLFTPFQQLESLDLT- 56
             TDCC   W  V C   T   RV  LDLS +       + + +SL      L  L +  
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK--PYPIPSSLAN-LPYLNFLYIGG 85

Query: 57  QNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSI 116
            N + G +       +++L  L  L ++  + + +I   L+ + +L +L+  +N L G++
Sbjct: 86  INNLVGPIPPA----IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141

Query: 117 DVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNG 164
               + +  NL  +T + + +  ++  S  S      ++++S   + G
Sbjct: 142 P-PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 53.7 bits (130), Expect = 7e-09
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 48  QQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNL 107
           +  + + L +N +A       + ++    NL  L+L  N    ++   LT L  L SLN+
Sbjct: 221 KNTQKIHLAKNSLAF-----DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 108 LWNRLEGSIDVKELHNFTNLEYLTLES 134
            +N L G I   +  N    +     +
Sbjct: 276 SFNNLCGEIP--QGGNLQRFDVSAYAN 300

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.6 bits (163), Expect = 5e-13
 Identities = 30/165 (18%), Positives = 60/165 (36%), Gaps = 12/165 (7%)

Query: 50  LESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLW 109
            ++LDL+ N +                 L++L+LS          +   LS L +L L  
Sbjct: 30  TKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 110 NRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQ 169
           N ++           ++L+ L    ++L       I  +  +LK L+++   +      +
Sbjct: 86  NPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFPIGHL-KTLKELNVAHNLIQSFKLPE 143

Query: 170 GFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTL 214
            F +  +LEH D+       +     I    +  L  + L   +L
Sbjct: 144 YFSNLTNLEHLDLS------SNKIQSIYCTDLRVLHQMPLLNLSL 182

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 39/168 (23%), Positives = 60/168 (35%), Gaps = 7/168 (4%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103
           F   +QLE LD   + +    E      L    NL  L++S      +       LSSL 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLR---NLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN 163
            L +  N  + +          NL +L L    L   L  +  +   SL+ L+MS     
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 164 GVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
            +     +    SL+  D       + TS  Q +     SL +L L+ 
Sbjct: 508 SLDTFP-YKCLNSLQVLDYSLNH--IMTSKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 37/190 (19%), Positives = 74/190 (38%), Gaps = 12/190 (6%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98
           L +  F  F +L+ LDL++ +I    +         L++L  L L+GN   +  L + + 
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 99  LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMS 158
           LSSL+ L  +   L    +   + +   L+ L +  + +    L    S   +L++L +S
Sbjct: 99  LSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 159 FCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGES---MPSLKYLLLSYSTLG 215
             ++  +         + L    +    + L+ + +  I         L  L L  +   
Sbjct: 158 SNKIQSIYCT----DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDS 213

Query: 216 TNSSRILHQG 225
            N  +   QG
Sbjct: 214 LNVMKTCIQG 223

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.5 bits (155), Expect = 5e-12
 Identities = 35/172 (20%), Positives = 66/172 (38%), Gaps = 7/172 (4%)

Query: 40  NASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 99
           NA        LE LDL++N ++   +    +      +LK L+LS N    ++ S+   L
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSF--KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGL 395

Query: 100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSF 159
             L  L+   + L+   +     +  NL YL +  +   ++          SL+ L M+ 
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMAG 454

Query: 160 CEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
                      F   ++L   D+   ++            S+ SL+ L +S+
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQL---EQLSPTAFNSLSSLQVLNMSH 503

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.0 bits (146), Expect = 8e-11
 Identities = 28/183 (15%), Positives = 57/183 (31%), Gaps = 8/183 (4%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNN-SILSSLT 97
           L    F+    L+ L   +  +A          +  L  LK LN++ N   +  +    +
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFP----IGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 98  HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIF--PSLKNL 155
           +L++L  L+L  N+++      +L     +  L L        +       F    L  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205

Query: 156 SMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLG 215
           ++     +  V          LE   +         +  +    ++  L  L +    L 
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 216 TNS 218
              
Sbjct: 266 YLD 268

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 34/176 (19%), Positives = 67/176 (38%), Gaps = 11/176 (6%)

Query: 42  SLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 101
             +     L +L LT N I            S L++L+ L     +  +     + HL +
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGA----FSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 102 LRSLNLLWNRLEGSIDVKELHNFTNLEYLTLES---SSLHISLLQSIASIFPSLKNLSMS 158
           L+ LN+  N ++     +   N TNLE+L L S    S++ + L+ +  +     +L +S
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 159 FCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTL 214
              +N +  G        L    +R      + + ++   + +  L+   L     
Sbjct: 186 LNPMNFIQPGAF--KEIRLHKLTLRNNF--DSLNVMKTCIQGLAGLEVHRLVLGEF 237

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 11/139 (7%)

Query: 76  NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESS 135
            + K L+LS N   +    S      L+ L+L    ++   D     + ++L  L L  +
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGN 86

Query: 136 SLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDM---RFARIALNTS 192
            +    L + +    SL+ L      +  +       H K+L+  ++         L   
Sbjct: 87  PIQSLALGAFSG-LSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 193 FLQIIGESMPSLKYLLLSY 211
           F      ++ +L++L LS 
Sbjct: 145 F-----SNLTNLEHLDLSS 158

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 37/207 (17%), Positives = 62/207 (29%), Gaps = 34/207 (16%)

Query: 25  LDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLS 84
             L+Y+   +Y       LF     + S  L    I      E ++  S     + L L 
Sbjct: 262 FRLAYL---DYYLDDIIDLFNCLTNVSSFSLVSVTI------ERVKDFSYNFGWQHLELV 312

Query: 85  GNSFNN-------------------SILSSLTHLSSLRSLNLLWNRLEGS-IDVKELHNF 124
              F                         S   L SL  L+L  N L       +     
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 125 TNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRF 184
           T+L+YL L  S   +  + S       L++L      +  +     F   ++L + D+  
Sbjct: 373 TSLKYLDL--SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 185 ARIALNTSFLQIIGESMPSLKYLLLSY 211
                       I   + SL+ L ++ 
Sbjct: 431 THT---RVAFNGIFNGLSSLEVLKMAG 454

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 40/196 (20%), Positives = 68/196 (34%), Gaps = 22/196 (11%)

Query: 36  SWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIER--LSRLNNLKMLNLSGNSFN---N 90
           S  +  +       LE   L   +       E  ++  L  L NL +        +   +
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 91  SILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFP 150
            I+     L+++ S +L+   +E   D          ++L L    ++    Q       
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLEL----VNCKFGQFPTLKLK 325

Query: 151 SLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGES---MPSLKYL 207
           SLK L+ +  +              SLE  D+    +    SF     +S     SLKYL
Sbjct: 326 SLKRLTFTSNKGGNA---FSEVDLPSLEFLDLSRNGL----SFKGCCSQSDFGTTSLKYL 378

Query: 208 LLSYSTLGTNSSRILH 223
            LS++ + T SS  L 
Sbjct: 379 DLSFNGVITMSSNFLG 394

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 17/168 (10%)

Query: 49  QLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLL 108
           +L  L L  N  +  V    I+ L+ L   +++     +  N      + L  L +L + 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 109 WNRLE-----GSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN 163
             RL          +   +  TN+   +L   S+ I  ++   S     ++L +  C+  
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSL--VSVTIERVKDF-SYNFGWQHLELVNCKFG 317

Query: 164 GVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
                      KSL+       +     S +      +PSL++L LS 
Sbjct: 318 QF----PTLKLKSLKRLTFTSNKGGNAFSEV-----DLPSLEFLDLSR 356

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 34/201 (16%), Positives = 75/201 (37%), Gaps = 20/201 (9%)

Query: 25  LDLSYIYSGEYSWYLNASLFTP--FQQLESLDLTQNKIAG--CVENEGIERLSRLNNLKM 80
           L++  +  GE+    N   F     + L +L + + ++A      ++ I+  + L N+  
Sbjct: 227 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286

Query: 81  LNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHIS 140
            +L   +     +   ++    + L L+  +                    L  +S    
Sbjct: 287 FSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQ------FPTLKLKSLKRLTFTSNKGG 338

Query: 141 LLQSIASIFPSLKNLSMSFCEVNGV-VRGQGFPHFKSLEHFDMRFARIA-LNTSFLQIIG 198
              S   + PSL+ L +S   ++      Q      SL++ D+ F  +  ++++FL    
Sbjct: 339 NAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL---- 393

Query: 199 ESMPSLKYLLLSYSTLGTNSS 219
             +  L++L   +S L   S 
Sbjct: 394 -GLEQLEHLDFQHSNLKQMSE 413

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 38  YLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 97
            L+ + F     L+ L+++ N                LN+L++L+ S N    S    L 
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP----YKCLNSLQVLDYSLNHIMTSKKQELQ 539

Query: 98  HL-SSLRSLNLLWNRLEGSIDVKELHNFTN 126
           H  SSL  LNL  N    + + +    +  
Sbjct: 540 HFPSSLAFLNLTQNDFACTCEHQSFLQWIK 569

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.3 bits (161), Expect = 6e-13
 Identities = 44/175 (25%), Positives = 71/175 (40%), Gaps = 17/175 (9%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103
            T  + L  L L +NKI      + +  L  L  LK L+L  N  ++  ++ L HL  L 
Sbjct: 83  LTNLKNLGWLFLDENKI------KDLSSLKDLKKLKSLSLEHNGISD--INGLVHLPQLE 134

Query: 104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN 163
           SL L  N++    D+  L   T L+ L+LE +   IS +  +A     L+NL +S    N
Sbjct: 135 SLYLGNNKIT---DITVLSRLTKLDTLSLEDN--QISDIVPLAG-LTKLQNLYLSK---N 185

Query: 164 GVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNS 218
            +   +     K+L+  ++            Q       ++K    S  T    S
Sbjct: 186 HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.5 bits (159), Expect = 1e-12
 Identities = 32/165 (19%), Positives = 66/165 (40%), Gaps = 22/165 (13%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
              ++ +    + I      + ++ +  L N+  L L+GN    + +  LT+L +L  L 
Sbjct: 42  LNSIDQIIANNSDI------KSVQGIQYLPNVTKLFLNGN--KLTDIKPLTNLKNLGWLF 93

Query: 107 LLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVV 166
           L  N+++   D+  L +   L+ L+L      IS +  +    P L++L +     N + 
Sbjct: 94  LDENKIK---DLSSLKDLKKLKSLSL--EHNGISDINGLVH-LPQLESLYLGN---NKIT 144

Query: 167 RGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
                     L+   +   +I+ +   L      +  L+ L LS 
Sbjct: 145 DITVLSRLTKLDTLSLEDNQIS-DIVPLA----GLTKLQNLYLSK 184

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.5 bits (159), Expect = 1e-12
 Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 22/165 (13%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
           F +    +L +  +            + LN++  +  + +   +  +  + +L ++  L 
Sbjct: 20  FAETIKDNLKKKSV------TDAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 71

Query: 107 LLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVV 166
           L  N+L    D+K L N  NL +L L      I  L S+      LK+LS+    ++ + 
Sbjct: 72  LNGNKLT---DIKPLTNLKNLGWLFL--DENKIKDLSSLKD-LKKLKSLSLEHNGISDI- 124

Query: 167 RGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
              G  H   LE   +   +I  + + L      +  L  L L  
Sbjct: 125 --NGLVHLPQLESLYLGNNKIT-DITVL----SRLTKLDTLSLED 162

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.5 bits (159), Expect = 1e-12
 Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 22/168 (13%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103
                 +  L L  NK+        I+ L+ L NL  L L  N   +  LSSL  L  L+
Sbjct: 61  IQYLPNVTKLFLNGNKL------TDIKPLTNLKNLGWLFLDENKIKD--LSSLKDLKKLK 112

Query: 104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN 163
           SL+L  N +    D+  L +   LE L L   +  I+ +  ++     L  LS+   +++
Sbjct: 113 SLSLEHNGIS---DINGLVHLPQLESLYL--GNNKITDITVLSR-LTKLDTLSLEDNQIS 166

Query: 164 GVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
            +           L++  +    I+ +   L      + +L  L L  
Sbjct: 167 DI---VPLAGLTKLQNLYLSKNHIS-DLRAL----AGLKNLDVLELFS 206

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.8 bits (139), Expect = 4e-10
 Identities = 21/162 (12%), Positives = 49/162 (30%), Gaps = 22/162 (13%)

Query: 50  LESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLW 109
           +         I      + I            NL   S  +    +   L+S+  +    
Sbjct: 1   MGETITVSTPI------KQIFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANN 52

Query: 110 NRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQ 169
           + ++    V+ +    N+  L L  +   ++ ++ + +   +L  L +     N +    
Sbjct: 53  SDIK---SVQGIQYLPNVTKLFL--NGNKLTDIKPLTN-LKNLGWLFLDE---NKIKDLS 103

Query: 170 GFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
                K L+   +    I+            +P L+ L L  
Sbjct: 104 SLKDLKKLKSLSLEHNGISDINGL-----VHLPQLESLYLGN 140

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.3 bits (109), Expect = 3e-06
 Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 6/89 (6%)

Query: 42  SLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 101
                  +L++L L++N I        +  L+ L NL +L L      N  ++  ++L  
Sbjct: 169 VPLAGLTKLQNLYLSKNHI------SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVV 222

Query: 102 LRSLNLLWNRLEGSIDVKELHNFTNLEYL 130
             ++      L     + +  ++      
Sbjct: 223 PNTVKNTDGSLVTPEIISDDGDYEKPNVK 251

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.8 bits (158), Expect = 2e-12
 Identities = 33/186 (17%), Positives = 67/186 (36%), Gaps = 10/186 (5%)

Query: 42  SLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSI-LSSLTHLS 100
            +       E L L+ N I              L  L++L L       +I   +  +L 
Sbjct: 18  QVPQVLNTTERLLLSFNYI----RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73

Query: 101 SLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIA-SIFPSLKNLSMSF 159
           +LR L+L  +++   +         +L  L L    L  ++L+        +L  L +S 
Sbjct: 74  NLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132

Query: 160 CEVNGVVRGQGFPHFKSLEHFDMRFARI-ALNTSFLQIIGESMPSLKYLLLSYSTLGTNS 218
            ++  +     F    SL+  D    +I  +    L+ +     +L +  L+ ++L +  
Sbjct: 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL--QGKTLSFFSLAANSLYSRV 190

Query: 219 SRILHQ 224
           S    +
Sbjct: 191 SVDWGK 196

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.9 bits (153), Expect = 1e-11
 Identities = 29/190 (15%), Positives = 61/190 (32%), Gaps = 23/190 (12%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98
           +    F     L+ L+L+ N +              L  +  ++L  N        +   
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLL----GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360

Query: 99  LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMS 158
           L  L++L+L  N L        +H   ++  + L  + L      ++  I  +   + +S
Sbjct: 361 LEKLQTLDLRDNALT------TIHFIPSIPDIFLSGNKLV-----TLPKINLTANLIHLS 409

Query: 159 FCEVNGVVRGQGFPHFKSLEHFDM---RFARIALNTSFLQIIGESMPSLKYLLLSYSTLG 215
              +  +           L+   +   RF+  + + +         PSL+ L L  + L 
Sbjct: 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP-----SENPSLEQLFLGENMLQ 464

Query: 216 TNSSRILHQG 225
                 L   
Sbjct: 465 LAWETELCWD 474

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.5 bits (152), Expect = 1e-11
 Identities = 34/193 (17%), Positives = 65/193 (33%), Gaps = 26/193 (13%)

Query: 38  YLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNN-SILSSL 96
            L +S F    ++  +DL +N IA   +         L  L+ L+L  N+      + S+
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQT----FKFLEKLQTLDLRDNALTTIHFIPSI 383

Query: 97  THLS--------------SLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLL 142
             +               +   ++L  NRLE    +  L    +L+ L L  +       
Sbjct: 384 PDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443

Query: 143 QSIASIFPSLKNLSMSFCEVNGV----VRGQGFPHFKSLEHFDMRFARIALNTSFLQIIG 198
               S  PSL+ L +    +       +    F     L+   +    +    S    + 
Sbjct: 444 DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL---NSLPPGVF 500

Query: 199 ESMPSLKYLLLSY 211
             + +L+ L L+ 
Sbjct: 501 SHLTALRGLSLNS 513

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 37/192 (19%), Positives = 71/192 (36%), Gaps = 11/192 (5%)

Query: 38  YLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 97
            + AS F   +QL+ L+L        ++ E       L NL++L+L  +        +  
Sbjct: 38  TVTASSFPFLEQLQLLELGSQYTPLTIDKEA---FRNLPNLRILDLGSSKIYFLHPDAFQ 94

Query: 98  HLSSLRSLNLLWNRL-EGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLS 156
            L  L  L L +  L +  +      N   L  L L  + +    L        SLK++ 
Sbjct: 95  GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154

Query: 157 MSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQI---IGESMPSLKYLLLSYST 213
            S  ++  V         + L+   + F  +A N+ + ++    G+ M   + ++L    
Sbjct: 155 FSSNQIFLVCEH----ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210

Query: 214 LGTNSSRILHQG 225
           +  N   +   G
Sbjct: 211 VSGNGWTVDITG 222

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.2 bits (133), Expect = 3e-09
 Identities = 26/187 (13%), Positives = 60/187 (32%), Gaps = 11/187 (5%)

Query: 36  SWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIER--LSRLNNLKMLNLSGNSFNNSIL 93
              ++   F     L  LDL  +KI        +       L +L  L L     ++++L
Sbjct: 61  PLTIDKEAFRNLPNLRILDLGSSKI------YFLHPDAFQGLFHLFELRLYFCGLSDAVL 114

Query: 94  SS--LTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASI-FP 150
                 +L +L  L+L  N++             +L+ +   S+ + +     +  +   
Sbjct: 115 KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174

Query: 151 SLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLS 210
           +L   S++   +   V            +  +    ++ N   + I G    ++      
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234

Query: 211 YSTLGTN 217
              L  +
Sbjct: 235 SLILAHH 241

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.2 bits (133), Expect = 3e-09
 Identities = 31/175 (17%), Positives = 61/175 (34%), Gaps = 9/175 (5%)

Query: 49  QLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLL 108
            +  LDL+   +     +        L +LK+LNL+ N  N     +   L +L+ LNL 
Sbjct: 267 SVRHLDLSHGFV----FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322

Query: 109 WNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRG 168
           +N L   +     +    + Y+ L+ + +   +          L+ L +    +  +   
Sbjct: 323 YNLLG-ELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTI--- 377

Query: 169 QGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRILH 223
              P    +     +   +        +I  S   L+ L + Y  L     +IL 
Sbjct: 378 HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI 432

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 28/203 (13%), Positives = 70/203 (34%), Gaps = 22/203 (10%)

Query: 38  YLNASLFTPFQQ--LESLDLTQNKIAGCVENEGIERLSRLNN--LKMLNLSGNSFNNSIL 93
            +      P Q   L    L  N +   V  +  + ++   N  L++L++SGN +   I 
Sbjct: 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221

Query: 94  S------------SLTHLSSLRSLNLLWNRLEG-SIDVKELHNFTNLEYLTLESSSLHIS 140
                        SL     +      ++ ++    +       +++ +L L    +  S
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-S 280

Query: 141 LLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGES 200
           L   +      LK L++++ ++N +     F    +L+  ++ +  +             
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKIADEA-FYGLDNLQVLNLSYNLL---GELYSSNFYG 336

Query: 201 MPSLKYLLLSYSTLGTNSSRILH 223
           +P + Y+ L  + +     +   
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFK 359

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 4/99 (4%)

Query: 42  SLFTPFQQLESLDLTQNKIAGCVENE-GIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 100
              +    LE L L +N +    E E   +    L++L++L L+ N  N+      +HL+
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT 504

Query: 101 SLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHI 139
           +LR L+L  NRL     +       NLE L +  + L  
Sbjct: 505 ALRGLSLNSNRLT---VLSHNDLPANLEILDISRNQLLA 540

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 9/124 (7%)

Query: 38  YLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 97
            L   +F+    L  L L  N++        +       NL++L++S N        +  
Sbjct: 494 SLPPGVFSHLTALRGLSLNSNRL------TVLSHNDLPANLEILDISRNQLLAP---NPD 544

Query: 98  HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSM 157
              SL  L++  N+     ++    N+ N   +T+      I  +   +    SL +LS 
Sbjct: 545 VFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLST 604

Query: 158 SFCE 161
             C+
Sbjct: 605 EGCD 608

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 63.1 bits (154), Expect = 5e-12
 Identities = 38/176 (21%), Positives = 68/176 (38%), Gaps = 13/176 (7%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98
           L   +F    QL  L L+ N ++   +    +      +LK L+LS N    ++ S+   
Sbjct: 43  LPHGVFDKLTQLTKLSLSSNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLG 99

Query: 99  LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIF---PSLKNL 155
           L  L  L+   + L+   +     +  NL YL +  S  H  +  +   IF    SL+ L
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI--SHTHTRVAFN--GIFNGLSSLEVL 155

Query: 156 SMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
            M+            F   ++L   D+   ++            S+ SL+ L +S+
Sbjct: 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQL---EQLSPTAFNSLSSLQVLNMSH 208

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.5 bits (129), Expect = 8e-09
 Identities = 38/168 (22%), Positives = 59/168 (35%), Gaps = 9/168 (5%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103
           F   +QLE LD   + +   +    +     L NL  L++S      +       LSSL 
Sbjct: 97  FLGLEQLEHLDFQHSNL-KQMSEFSV--FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153

Query: 104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN 163
            L +  N  + +          NL +L L    L   L  +  +   SL+ L+MS     
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF 212

Query: 164 GVVRGQGFPHFKSLEHFDMRFARI-ALNTSFLQIIGESMPSLKYLLLS 210
            +     +    SL+  D     I       LQ       SL +L L+
Sbjct: 213 SLDTFP-YKCLNSLQVLDYSLNHIMTSKKQELQHF---PSSLAFLNLT 256

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.6 bits (148), Expect = 3e-11
 Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 21/168 (12%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103
            +   +L +L +  NKI        I  L  L NL+ L L+ ++ ++  +S L +L+ + 
Sbjct: 84  LSNLVKLTNLYIGTNKI------TDISALQNLTNLRELYLNEDNISD--ISPLANLTKMY 135

Query: 104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN 163
           SLNL  N     +    L N T L YLT+  +   +  +  IA+    L +LS+++ ++ 
Sbjct: 136 SLNLGANHNLSDL--SPLSNMTGLNYLTV--TESKVKDVTPIAN-LTDLYSLSLNYNQIE 190

Query: 164 GVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
            +          SL +F     +I   T        +M  L  L +  
Sbjct: 191 DI---SPLASLTSLHYFTAYVNQITDITPV-----ANMTRLNSLKIGN 230

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.6 bits (148), Expect = 4e-11
 Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 21/165 (12%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
              LE L+L  N+I        I  LS L  L  L +  N    + +S+L +L++LR L 
Sbjct: 65  LTNLEYLNLNGNQI------TDISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELY 116

Query: 107 LLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVV 166
           L  + +    D+  L N T +  L L ++   +S L  +++    L  L+++  +V  V 
Sbjct: 117 LNEDNIS---DISPLANLTKMYSLNLGANHN-LSDLSPLSN-MTGLNYLTVTESKVKDV- 170

Query: 167 RGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
                 +   L    + + +I   +        S+ SL Y     
Sbjct: 171 --TPIANLTDLYSLSLNYNQIEDISPL-----ASLTSLHYFTAYV 208

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 35/168 (20%), Positives = 71/168 (42%), Gaps = 21/168 (12%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103
               + +  L +   K+        I+ +  L NL+ LNL+GN   +  +S L++L  L 
Sbjct: 40  QEELESITKLVVAGEKV------ASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLT 91

Query: 104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN 163
           +L +  N++    D+  L N TNL  L L  +  +IS +  +A+    + +L++      
Sbjct: 92  NLYIGTNKIT---DISALQNLTNLRELYL--NEDNISDISPLAN-LTKMYSLNLGANHNL 145

Query: 164 GVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
             +      +   L +  +  +++   T        ++  L  L L+Y
Sbjct: 146 SDL--SPLSNMTGLNYLTVTESKVKDVTPI-----ANLTDLYSLSLNY 186

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.3 bits (142), Expect = 2e-10
 Identities = 24/165 (14%), Positives = 64/165 (38%), Gaps = 21/165 (12%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
             +     L +  +        +     L ++  L ++G    +  +  + +L++L  LN
Sbjct: 21  LAEGIRAVLQKASV------TDVVTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLN 72

Query: 107 LLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVV 166
           L  N++    D+  L N   L  L +   +  I+ + ++ ++  +L+ L ++   ++ + 
Sbjct: 73  LNGNQIT---DISPLSNLVKLTNLYI--GTNKITDISALQNL-TNLRELYLNEDNISDI- 125

Query: 167 RGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
                 +   +   ++       + S L     +M  L YL ++ 
Sbjct: 126 --SPLANLTKMYSLNLGANHNLSDLSPL----SNMTGLNYLTVTE 164

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.6 bits (140), Expect = 4e-10
 Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 21/168 (12%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103
                 L  L L ++ I        I  L+ L  +  LNL  N  N S LS L++++ L 
Sbjct: 106 LQNLTNLRELYLNEDNI------SDISPLANLTKMYSLNLGANH-NLSDLSPLSNMTGLN 158

Query: 104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN 163
            L +  ++++   DV  + N T+L  L+L  +   I  +  +AS   SL   +    ++ 
Sbjct: 159 YLTVTESKVK---DVTPIANLTDLYSLSLNYN--QIEDISPLAS-LTSLHYFTAYVNQIT 212

Query: 164 GVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
            +       +   L    +   +I   +        ++  L +L +  
Sbjct: 213 DI---TPVANMTRLNSLKIGNNKITDLSPL-----ANLSQLTWLEIGT 252

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.8 bits (138), Expect = 7e-10
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 12/115 (10%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103
                QL  L++  N+I        I  +  L  LKMLN+  N  ++  +S L +LS L 
Sbjct: 239 LANLSQLTWLEIGTNQI------SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLN 290

Query: 104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMS 158
           SL L  N+L  + D++ +   TNL  L L  +  HI+ ++ +AS+   + +   +
Sbjct: 291 SLFLNNNQLG-NEDMEVIGGLTNLTTLFLSQN--HITDIRPLASL-SKMDSADFA 341

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.0 bits (136), Expect = 1e-09
 Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 15/135 (11%)

Query: 48  QQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNL 107
            +L SL +  NKI        +  L+ L+ L  L +  N  ++  ++++  L+ L+ LN+
Sbjct: 221 TRLNSLKIGNNKI------TDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNV 272

Query: 108 LWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVR 167
             N++    D+  L+N + L  L L ++ L    ++ I     +L  L +S   +  +  
Sbjct: 273 GSNQIS---DISVLNNLSQLNSLFLNNNQLGNEDMEVIGG-LTNLTTLFLSQNHITDI-- 326

Query: 168 GQGFPHFKSLEHFDM 182
            +       ++  D 
Sbjct: 327 -RPLASLSKMDSADF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.5 bits (132), Expect = 5e-09
 Identities = 25/172 (14%), Positives = 59/172 (34%), Gaps = 22/172 (12%)

Query: 50  LESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLW 109
             +L      I        I   + L       L   S  +  + +   L S+  L +  
Sbjct: 2   AATLATLPAPI------NQIFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAG 53

Query: 110 NRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQ 169
            ++     ++ +   TNLEYL L  +   I+ +  +++    L NL +   ++  +    
Sbjct: 54  EKVA---SIQGIEYLTNLEYLNL--NGNQITDISPLSN-LVKLTNLYIGTNKITDI---S 104

Query: 170 GFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRI 221
              +  +L    +    I+  +        ++  +  L L  +   ++ S +
Sbjct: 105 ALQNLTNLRELYLNEDNISDISPL-----ANLTKMYSLNLGANHNLSDLSPL 151

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.1 bits (131), Expect = 5e-09
 Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103
                +L+ L++  N+I        I  L+ L+ L  L L+ N   N  +  +  L++L 
Sbjct: 261 VKDLTKLKMLNVGSNQI------SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314

Query: 104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLES 134
           +L L  N +    D++ L + + ++     +
Sbjct: 315 TLFLSQNHIT---DIRPLASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103
                QL SL L  N++     NE +E +  L NL  L LS N   +  +  L  LS + 
Sbjct: 283 LNNLSQLNSLFLNNNQL----GNEDMEVIGGLTNLTTLFLSQNHITD--IRPLASLSKMD 336

Query: 104 SLNLLWNRLE 113
           S +     ++
Sbjct: 337 SADFANQVIK 346

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.9 bits (148), Expect = 4e-11
 Identities = 38/187 (20%), Positives = 68/187 (36%), Gaps = 12/187 (6%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSL 96
           +          L+ L L  ++I        IE      L +L+ L+LS N  ++   S  
Sbjct: 41  IGHGDLRACANLQVLILKSSRI------NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF 94

Query: 97  THLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLS 156
             LSSL+ LNL+ N  +         N TNL+ L + +      + +   +   SL  L 
Sbjct: 95  GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154

Query: 157 MSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGT 216
           +    +            + + H  +  +        L+I  + + S++YL L  + L  
Sbjct: 155 IKALSLRNYQSQS-LKSIRDIHHLTLHLSES---AFLLEIFADILSSVRYLELRDTNLAR 210

Query: 217 NSSRILH 223
                L 
Sbjct: 211 FQFSPLP 217

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 33/193 (17%), Positives = 73/193 (37%), Gaps = 29/193 (15%)

Query: 25  LDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIER--LSRLNNLKMLN 82
           L +   Y     +Y  +++++  ++++ + +  +K+        +       L +L+ L+
Sbjct: 291 LHIPQFYL----FYDLSTVYSLLEKVKRITVENSKV------FLVPCSFSQHLKSLEFLD 340

Query: 83  LSGNSFNNSIL---SSLTHLSSLRSLNLLWNRLEG-SIDVKELHNFTNLEYLTLESSSLH 138
           LS N      L   +      SL++L L  N L       + L    NL  L +  ++ H
Sbjct: 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

Query: 139 ISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIG 198
              +         ++ L++S   +  V         ++LE  D       ++ + L    
Sbjct: 401 P--MPDSCQWPEKMRFLNLSSTGIRVVKTCI----PQTLEVLD-------VSNNNLDSFS 447

Query: 199 ESMPSLKYLLLSY 211
             +P L+ L +S 
Sbjct: 448 LFLPRLQELYISR 460

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.3 bits (131), Expect = 6e-09
 Identities = 38/176 (21%), Positives = 67/176 (38%), Gaps = 8/176 (4%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
              ++SLDL+ NKI       G   L    NL++L L  +  N     +   L SL  L+
Sbjct: 25  TAAMKSLDLSFNKI----TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80

Query: 107 LLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVV 166
           L  N L  S+        ++L+YL L  +      + S+     +L+ L +   E    +
Sbjct: 81  LSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139

Query: 167 RGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL 222
           R   F    SL   +++   +    ++     +S+  + +L L  S          
Sbjct: 140 RRIDFAGLTSLNELEIKALSL---RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFA 192

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.6 bits (116), Expect = 6e-07
 Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 26/135 (19%)

Query: 41  ASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSF------------ 88
             +    + L SLD+++N       +   +       ++ LNLS                
Sbjct: 380 GEILLTLKNLTSLDISRNTF-----HPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLE 434

Query: 89  -----NNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQ 143
                NN++ S    L  L+ L +  N+L+    + +   F  L  + +  + L  S+  
Sbjct: 435 VLDVSNNNLDSFSLFLPRLQELYISRNKLK---TLPDASLFPVLLVMKISRNQLK-SVPD 490

Query: 144 SIASIFPSLKNLSMS 158
            I     SL+ + + 
Sbjct: 491 GIFDRLTSLQKIWLH 505

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 25/179 (13%), Positives = 67/179 (37%), Gaps = 12/179 (6%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLN--NLKMLNLSGNSFNNSILSSL 96
           L   L     + +   L         E++ +  L ++    ++ L++        + +  
Sbjct: 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306

Query: 97  THLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASI--FPSLKN 154
           + L  ++ + +  +++   +      +  +LE+L L  + +    L++ A    +PSL+ 
Sbjct: 307 SLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT 365

Query: 155 LSMSFCEVNGVVRGQG-FPHFKSLEHFDMRFARIA-LNTSFLQIIGESMPSLKYLLLSY 211
           L +S   +  + +        K+L   D+       +  S      +    +++L LS 
Sbjct: 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC-----QWPEKMRFLNLSS 419

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 26/198 (13%), Positives = 61/198 (30%), Gaps = 17/198 (8%)

Query: 40  NASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 99
             SLF     L++L +   +    +        + L +L  L +   S  N    SL  +
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRID---FAGLTSLNELEIKALSLRNYQSQSLKSI 171

Query: 100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLH------------ISLLQSIAS 147
             +  L L  +     +        +++ YL L  ++L              S ++ +A 
Sbjct: 172 RDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230

Query: 148 IFPSLKNLSM-SFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKY 206
               L + S     ++   +       F       +     + +    ++      +++ 
Sbjct: 231 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR 290

Query: 207 LLLSYSTLGTNSSRILHQ 224
           L +    L  + S +   
Sbjct: 291 LHIPQFYLFYDLSTVYSL 308

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 22/190 (11%), Positives = 60/190 (31%), Gaps = 24/190 (12%)

Query: 38  YLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 97
              +      + +  L L  ++ A  +E         L++++ L L   +      S L 
Sbjct: 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIF----ADILSSVRYLELRDTNLARFQFSPLP 217

Query: 98  HLSSLRSLNLLWNRLEGSID------VKELHNFTNLEYLTLESSSL---------HISLL 142
                  +  L  R     D      +K L     L  +  +  +L            ++
Sbjct: 218 VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVV 277

Query: 143 QSIASI-FPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESM 201
             +  +   +++ L +    +   +    +   + ++   +  +++           + +
Sbjct: 278 SELGKVETVTIRRLHIPQFYLFYDLSTV-YSLLEKVKRITVENSKV---FLVPCSFSQHL 333

Query: 202 PSLKYLLLSY 211
            SL++L LS 
Sbjct: 334 KSLEFLDLSE 343

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 11/92 (11%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
            Q LE LD++ N +              L  L+ L +S N      L   +    L  + 
Sbjct: 430 PQTLEVLDVSNNNLD--------SFSLFLPRLQELYISRNKL--KTLPDASLFPVLLVMK 479

Query: 107 LLWNRLEGSIDVKELHNFTNLEYLTLESSSLH 138
           +  N+L+ S+        T+L+ + L ++   
Sbjct: 480 ISRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 42  SLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 101
           S      +L+ L +++NK+      + +   S    L ++ +S N   +        L+S
Sbjct: 445 SFSLFLPRLQELYISRNKL------KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTS 498

Query: 102 LRSLNLLWNRL 112
           L+ + L  N  
Sbjct: 499 LQKIWLHTNPW 509

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.0 bits (146), Expect = 5e-11
 Identities = 39/173 (22%), Positives = 76/173 (43%), Gaps = 19/173 (10%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98
             ASL      ++ LDL+ N ++     +    L+    L++LNLS N         L  
Sbjct: 25  ALASLRQSAWNVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYE--TLDLES 78

Query: 99  LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMS 158
           LS+LR+L+L  N ++      EL    ++E L    ++ +IS +    S     KN+ ++
Sbjct: 79  LSTLRTLDLNNNYVQ------ELLVGPSIETLHA--ANNNISRVS--CSRGQGKKNIYLA 128

Query: 159 FCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
             ++  +           +++ D++   I    +F ++   S  +L++L L Y
Sbjct: 129 NNKITMLRDLD-EGCRSRVQYLDLKLNEID-TVNFAELAA-SSDTLEHLNLQY 178

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 16/137 (11%)

Query: 75  LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLES 134
            N  K+  ++ +S   ++ S      +++ L+L  N L   I   +L  FT LE L L  
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNL-- 65

Query: 135 SSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFL 194
           SS  +     + S   +L+ L ++   V      Q      S+E        I+      
Sbjct: 66  SSNVLYETLDLES-LSTLRTLDLNNNYV------QELLVGPSIETLHAANNNIS------ 112

Query: 195 QIIGESMPSLKYLLLSY 211
           ++        K + L+ 
Sbjct: 113 RVSCSRGQGKKNIYLAN 129

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 29/177 (16%), Positives = 59/177 (33%), Gaps = 16/177 (9%)

Query: 46  PFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSL 105
               +E+L    N I        +   SR    K + L+ N             S ++ L
Sbjct: 97  VGPSIETLHAANNNI------SRVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 106 NLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGV 165
           +L  N ++     +   +   LE+L L      I  ++     F  LK L +S  ++  +
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNL--QYNFIYDVKGQVV-FAKLKTLDLSSNKLAFM 206

Query: 166 VRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL 222
             G  F     +    +R  ++      ++       +L++  L  +     + R  
Sbjct: 207 --GPEFQSAAGVTWISLRNNKL----VLIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 7/117 (5%)

Query: 45  TPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRS 104
             F +L++LDL+ NK+A                +  ++L  N     I  +L    +L  
Sbjct: 188 VVFAKLKTLDLSSNKLAFMGPE-----FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241

Query: 105 LNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCE 161
            +L  N                ++ +  ++    ++         P+L +     CE
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCE 297

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.5 bits (146), Expect = 6e-11
 Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 9/111 (8%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
              +  LDL+ N++           L+ L  L++L  S N+  N  +  + +L  L+ L 
Sbjct: 462 LLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDNALEN--VDGVANLPRLQELL 514

Query: 107 LLWNRLEGSIDVKELHNFTNLEYLTLESSSL--HISLLQSIASIFPSLKNL 155
           L  NRL+ S  ++ L +   L  L L+ +SL     + + +A + PS+ ++
Sbjct: 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 7/70 (10%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNN-SILSSLTHLSSL 102
               + LE L  + N +      E ++ ++ L  L+ L L  N     + +  L     L
Sbjct: 482 LAALRCLEVLQASDNAL------ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535

Query: 103 RSLNLLWNRL 112
             LNL  N L
Sbjct: 536 VLLNLQGNSL 545

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 34/169 (20%), Positives = 69/169 (40%), Gaps = 25/169 (14%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103
            T   Q+ +L   +  I      + I+ +  LNNL  +N S N   +  ++ L +L+ L 
Sbjct: 42  QTDLDQVTTLQADRLGI------KSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLV 93

Query: 104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN 163
            + +  N++    D+  L N TNL  LTL ++   I+ +  + +   +L  L +S   ++
Sbjct: 94  DILMNNNQIA---DITPLANLTNLTGLTLFNN--QITDIDPLKN-LTNLNRLELSSNTIS 147

Query: 164 GVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIG-ESMPSLKYLLLSY 211
            +          SL+                 +    ++ +L+ L +S 
Sbjct: 148 DI---SALSGLTSLQQLS-------FGNQVTDLKPLANLTTLERLDISS 186

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 23/168 (13%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103
                +L  + +  N+I        I  L+ L NL  L L  N   +  +  L +L++L 
Sbjct: 86  LKNLTKLVDILMNNNQI------ADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLN 137

Query: 104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN 163
            L L  N +    D+  L   T+L+ L+  +    +  L +      +L+ L +S  +V+
Sbjct: 138 RLELSSNTIS---DISALSGLTSLQQLSFGNQVTDLKPLAN----LTTLERLDISSNKVS 190

Query: 164 GVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
            +          +LE       +I+  T         + +L  L L+ 
Sbjct: 191 DI---SVLAKLTNLESLIATNNQISDITPL-----GILTNLDELSLNG 230

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 28/176 (15%), Positives = 67/176 (38%), Gaps = 23/176 (13%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103
            +   +L  L L  N+I        I  L+ L  L  L L+ N   +  +S +++L +L 
Sbjct: 261 LSGLTKLTELKLGANQI------SNISPLAGLTALTNLELNENQLED--ISPISNLKNLT 312

Query: 104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN 163
            L L +N +    D+  + + T L+ L   ++   +S + S+A+   ++  LS    +++
Sbjct: 313 YLTLYFNNIS---DISPVSSLTKLQRLFFYNN--KVSDVSSLAN-LTNINWLSAGHNQIS 366

Query: 164 GVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSS 219
            +       +   +    +       + ++         ++       +  G   +
Sbjct: 367 DL---TPLANLTRITQLGLN------DQAWTNAPVNYKANVSIPNTVKNVTGALIA 413

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.6 bits (132), Expect = 5e-09
 Identities = 32/165 (19%), Positives = 69/165 (41%), Gaps = 22/165 (13%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
              L+ L L  N++      + I  L+ L NL  L+L+ N  +N  L+ L+ L+ L  L 
Sbjct: 220 LTNLDELSLNGNQL------KDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELK 271

Query: 107 LLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVV 166
           L  N++    ++  L   T L  L L  +   +  +  I++   +L  L++ F  ++ + 
Sbjct: 272 LGANQIS---NISPLAGLTALTNLELNEN--QLEDISPISN-LKNLTYLTLYFNNISDI- 324

Query: 167 RGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
                     L+       ++    S +  +  ++ ++ +L   +
Sbjct: 325 --SPVSSLTKLQRLFFYNNKV----SDVSSLA-NLTNINWLSAGH 362

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.2 bits (131), Expect = 7e-09
 Identities = 35/168 (20%), Positives = 64/168 (38%), Gaps = 23/168 (13%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103
                 L  L+L+ N I        I  LS L +L+ L+        + L  L +L++L 
Sbjct: 130 LKNLTNLNRLELSSNTI------SDISALSGLTSLQQLSFGNQV---TDLKPLANLTTLE 180

Query: 104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN 163
            L++  N++    D+  L   TNLE L    ++  IS +  +     +L  LS++  ++ 
Sbjct: 181 RLDISSNKVS---DISVLAKLTNLESLIA--TNNQISDITPLGI-LTNLDELSLNGNQLK 234

Query: 164 GVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
            +          +L   D+   +I+            +  L  L L  
Sbjct: 235 DI---GTLASLTNLTDLDLANNQISNLAPL-----SGLTKLTELKLGA 274

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 22/164 (13%), Positives = 60/164 (36%), Gaps = 22/164 (13%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
             +     L +  +            + L+ +  L        +  +  + +L++L  +N
Sbjct: 23  LAEKMKTVLGKTNV------TDTVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 74

Query: 107 LLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVV 166
              N+L    D+  L N T L  + +  ++  I+ +  +A+   +L  L++   ++  + 
Sbjct: 75  FSNNQLT---DITPLKNLTKLVDILM--NNNQIADITPLAN-LTNLTGLTLFNNQITDI- 127

Query: 167 RGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLS 210
                 +  +L   ++    I+  ++        + SL+ L   
Sbjct: 128 --DPLKNLTNLNRLELSSNTISDISAL-----SGLTSLQQLSFG 164

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 19/146 (13%), Positives = 51/146 (34%), Gaps = 16/146 (10%)

Query: 69  IERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLE 128
           I   + L       L   +  +    S T L  + +L      ++    +  +    NL 
Sbjct: 17  IFTDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK---SIDGVEYLNNLT 71

Query: 129 YLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIA 188
            +    S+  ++ +  + +    L ++ M+  ++  +       +  +L    +   +I 
Sbjct: 72  QINF--SNNQLTDITPLKN-LTKLVDILMNNNQIADI---TPLANLTNLTGLTLFNNQIT 125

Query: 189 LNTSFLQIIGESMPSLKYLLLSYSTL 214
                     +++ +L  L LS +T+
Sbjct: 126 DIDPL-----KNLTNLNRLELSSNTI 146

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 16/123 (13%), Positives = 39/123 (31%), Gaps = 11/123 (8%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103
                 +  L    N+I        +  L+ L  +  L L+  ++ N+ ++   ++S   
Sbjct: 349 LANLTNINWLSAGHNQI------SDLTPLANLTRITQLGLNDQAWTNAPVNYKANVS--- 399

Query: 104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN 163
             N + N     I    + +  +     +  +    S    ++  F     +       +
Sbjct: 400 IPNTVKNVTGALIAPATISDGGSYTEPDI--TWNLPSYTNEVSYTFSQPVTIGKGTTTFS 457

Query: 164 GVV 166
           G V
Sbjct: 458 GTV 460

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 43  LFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL 102
           L   F++LE L      +        I  L +LN LK L LS N  +  +        +L
Sbjct: 37  LTDEFEELEFLSTINVGL------TSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90

Query: 103 RSLNLLWNRLEGSIDVKELHNFTNLEYLTLE 133
             LNL  N+++    ++ L    NL+ L L 
Sbjct: 91  THLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNN-SILSSLTHLSSL 102
                +L+ L+L+ N+++G +E        +  NL  LNLSGN   + S +  L  L +L
Sbjct: 60  LPKLNKLKKLELSDNRVSGGLEVLA----EKCPNLTHLNLSGNKIKDLSTIEPLKKLENL 115

Query: 103 RSLNLLWN 110
           +SL+L   
Sbjct: 116 KSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 123 NFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDM 182
             ++++ L L++S  +   L+ +   F  L+ LS       G+      P    L+  ++
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTIN---VGLTSIANLPKLNKLKKLEL 71

Query: 183 RFARIALNTSFLQIIGESMPSLKYLLLS 210
              R+   +  L+++ E  P+L +L LS
Sbjct: 72  SDNRV---SGGLEVLAEKCPNLTHLNLS 96

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 43  LFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL 102
           L     Q +++D + N+I        ++    L  LK L ++ N            L  L
Sbjct: 37  LGATLDQFDAIDFSDNEI------RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 103 RSLNLLWNRLEGSIDVKELHNFTNLEYLTLE 133
             L L  N L    D+  L +  +L YL + 
Sbjct: 91  TELILTNNSLVELGDLDPLASLKSLTYLCIL 121

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.3 bits (118), Expect = 9e-08
 Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 14/117 (11%)

Query: 49  QLESLDLTQNKIAGCVENEGIERL-SRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNL 107
           +   LDL   KI        IE L + L+    ++ S N      L     L  L++L +
Sbjct: 20  RDRELDLRGYKI------PVIENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLKTLLV 71

Query: 108 LWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASI--FPSLKNLSMSFCEV 162
             NR+   I         +L  L L ++   +  L  +  +    SL  L +    V
Sbjct: 72  NNNRIC-RIGEGLDQALPDLTELILTNN--SLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNN-SILSSLTHLSSL 102
           F   ++L++L +  N+I    E         L +L  L L+ NS      L  L  L SL
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGL----DQALPDLTELILTNNSLVELGDLDPLASLKSL 115

Query: 103 RSLNLLWN 110
             L +L N
Sbjct: 116 TYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 8/94 (8%)

Query: 117 DVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKS 176
              +  N      L L      I +++++ +       +  S    N + +  GFP  + 
Sbjct: 11  QAAQYTNAVRDRELDL--RGYKIPVIENLGATLDQFDAIDFSD---NEIRKLDGFPLLRR 65

Query: 177 LEHFDMRFARIALNTSFLQIIGESMPSLKYLLLS 210
           L+   +   RI       + + +++P L  L+L+
Sbjct: 66  LKTLLVNNNRI---CRIGEGLDQALPDLTELILT 96

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 8/121 (6%)

Query: 38  YLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 97
           Y++   F     L+ L+L    I        +  L+ L  L+ L +SGN F      S  
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNIKD------MPNLTPLVGLEELEMSGNHFPEIRPGSFH 239

Query: 98  HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSM 157
            LSSL+ L ++ +++   I+        +L  L L  ++L  SL   + +    L  L +
Sbjct: 240 GLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHL 297

Query: 158 S 158
            
Sbjct: 298 H 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 42/182 (23%), Positives = 59/182 (32%), Gaps = 29/182 (15%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSL 96
           + A  F     LE L L +N I        IE    + L +L  L L  N      L+ +
Sbjct: 90  IQADTFRHLHHLEVLQLGRNSIR------QIEVGAFNGLASLNTLELFDNW-----LTVI 138

Query: 97  -----THLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPS 151
                 +LS LR L L  N +E SI     +   +L  L L      +  +      F  
Sbjct: 139 PSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDL-GELKKLEYIS--EGAFEG 194

Query: 152 LKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIAL--NTSFLQIIGESMPSLKYLLL 209
           L NL      +  +           LE  +M           SF       + SLK L +
Sbjct: 195 LFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSF-----HGLSSLKKLWV 249

Query: 210 SY 211
             
Sbjct: 250 MN 251

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 38/178 (21%), Positives = 67/178 (37%), Gaps = 21/178 (11%)

Query: 38  YLNASLFTPFQQLESLDLTQNKIAGCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSS 95
            +    F     L +L+L  N +        I       L+ L+ L L  N   +    +
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTV------IPSGAFEYLSKLRELWLRNNPIESIPSYA 166

Query: 96  LTHLSSLRSLNLL-WNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKN 154
              + SL  L+L    +LE  I         NL+YL L     +I  + ++  +   L+ 
Sbjct: 167 FNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNL--GMCNIKDMPNLTPL-VGLEE 222

Query: 155 LSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIAL--NTSFLQIIGESMPSLKYLLLS 210
           L MS      +  G  F    SL+   +  ++++L    +F     + + SL  L L+
Sbjct: 223 LEMSGNHFPEIRPGS-FHGLSSLKKLWVMNSQVSLIERNAF-----DGLASLVELNLA 274

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 30/142 (21%), Positives = 49/142 (34%), Gaps = 19/142 (13%)

Query: 77  NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLES-- 134
           N + LNL  N+       +  HL  L  L L  N +   I+V   +   +L  L L    
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW 134

Query: 135 -SSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDM----RFARIAL 189
            + +     +        L+ L +    +   +    F    SL   D+    +   I+ 
Sbjct: 135 LTVIPSGAFEY----LSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISE 189

Query: 190 NTSFLQIIGESMPSLKYLLLSY 211
              F     E + +LKYL L  
Sbjct: 190 GA-F-----EGLFNLKYLNLGM 205

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 34/141 (24%), Positives = 53/141 (37%), Gaps = 5/141 (3%)

Query: 42  SLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 101
           S F   +QLE LD   + +    E         L NL  L++S      +       LSS
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSV---FLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 102 LRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCE 161
           L  L +  N  + +          NL +L L    L   L  +  +   SL+ L+M+  +
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQ 505

Query: 162 VNGVVRGQGFPHFKSLEHFDM 182
           +  V  G  F    SL+   +
Sbjct: 506 LKSVPDGI-FDRLTSLQKIWL 525

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 37/187 (19%), Positives = 68/187 (36%), Gaps = 13/187 (6%)

Query: 25  LDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLS 84
           L  +    G      NA        LE LDL++N ++   +    +      +LK L+LS
Sbjct: 330 LTFTSNKGG------NAFSEVDLPSLEFLDLSRNGLS--FKGCCSQSDFGTTSLKYLDLS 381

Query: 85  GNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQS 144
            N    ++ S+   L  L  L+   + L+   +     +  NL YL +  +         
Sbjct: 382 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNG 439

Query: 145 IASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSL 204
           I +   SL+ L M+            F   ++L   D+   ++            S+ SL
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL---EQLSPTAFNSLSSL 496

Query: 205 KYLLLSY 211
           + L ++ 
Sbjct: 497 QVLNMAS 503

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.6 bits (142), Expect = 3e-10
 Identities = 37/185 (20%), Positives = 76/185 (41%), Gaps = 12/185 (6%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98
           L +  F  F +L+ LDL++ +I   +E+        L++L  L L+GN   +  L + + 
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQT-IEDGA---YQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 99  LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMS 158
           LSSL+ L  +   L  S++   + +   L+ L +  + +    L    S   +L++L +S
Sbjct: 99  LSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 159 FCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGE---SMPSLKYLLLSYSTLG 215
             ++  +         + L    +    + L+ + +  I         L  L L  +   
Sbjct: 158 SNKIQSIYCT----DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDS 213

Query: 216 TNSSR 220
            N  +
Sbjct: 214 LNVMK 218

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 6/141 (4%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
               ++LDL+ N +                 L++L+LS          +   LS L +L 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 107 LLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVV 166
           L  N ++ S+ +      ++L+ L    ++L  SL         +LK L+++   +    
Sbjct: 83  LTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 167 RGQGFPHFKSLEHFDMRFARI 187
             + F +  +LEH D+   +I
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKI 161

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 40/202 (19%), Positives = 67/202 (33%), Gaps = 26/202 (12%)

Query: 42  SLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKM-LNLSGNSFNNSILSSLTHLS 100
             F+    LE LDL+ NKI   +    +  L ++  L + L+LS N  N     +   + 
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

Query: 101 SLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSL--HISLLQSIASIFPSLKNLSM- 157
            L  L L  N    ++    +     LE   L         +L +   S    L NL++ 
Sbjct: 202 -LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 158 ----SFCEVNGVVRGQGFPHFKSLEHFDMRFARIA----------------LNTSFLQII 197
               ++ +         F    ++  F +    I                 +N  F Q  
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 198 GESMPSLKYLLLSYSTLGTNSS 219
              + SLK L  + +  G   S
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFS 342

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 38/203 (18%), Positives = 63/203 (31%), Gaps = 26/203 (12%)

Query: 25  LDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLN-------- 76
             L+Y+   +Y       LF     + S  L    I    +         L         
Sbjct: 262 FRLAYL---DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ 318

Query: 77  -------NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEG-SIDVKELHNFTNLE 128
                  +LK L  + N   N    S   L SL  L+L  N L       +     T+L+
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 129 YLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIA 188
           YL L  S   +  + S       L++L      +  +     F   ++L + D+      
Sbjct: 377 YLDL--SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT- 433

Query: 189 LNTSFLQIIGESMPSLKYLLLSY 211
                   I   + SL+ L ++ 
Sbjct: 434 --RVAFNGIFNGLSSLEVLKMAG 454

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 32/166 (19%), Positives = 59/166 (35%), Gaps = 13/166 (7%)

Query: 49  QLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLL 108
           +L  L L  N  +  V    I+ L+ L   +++     +  N      + L  L +L + 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 109 WNRLEG--SIDVKELHNFTNLEYLTLES-SSLHISLLQSIASIFPSLKNLSMSFCEVNGV 165
             RL          +  F  L  ++  S  S+ I  ++   S     ++L +  C+    
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF-SYNFGWQHLELVNCKFGQF 319

Query: 166 VRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
                    KSL+       +     S +      +PSL++L LS 
Sbjct: 320 ----PTLKLKSLKRLTFTSNKGGNAFSEV-----DLPSLEFLDLSR 356

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 8/82 (9%)

Query: 36  SWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIER--LSRLNNLKMLNLSGNSFNNSIL 93
                  +FT  + L  LDL+Q ++      E +     + L++L++LN++ N   +   
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQL------EQLSPTAFNSLSSLQVLNMASNQLKSVPD 511

Query: 94  SSLTHLSSLRSLNLLWNRLEGS 115
                L+SL+ + L  N  + S
Sbjct: 512 GIFDRLTSLQKIWLHTNPWDCS 533

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 6/91 (6%)

Query: 43  LFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL 102
           L   F  LE L L    +        +  L +L  LK L LS N     +      L +L
Sbjct: 44  LTAEFVNLEFLSLINVGL------ISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 103 RSLNLLWNRLEGSIDVKELHNFTNLEYLTLE 133
             LNL  N+L+    ++ L     L+ L L 
Sbjct: 98  THLNLSGNKLKDISTLEPLKKLECLKSLDLF 128

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 10/118 (8%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
              +  L L   K     + +     +   NL+ L+L         +S+L  L  L+ L 
Sbjct: 23  PAAVRELVLDNCKSN---DGKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLKKLE 77

Query: 107 LLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASI--FPSLKNLSMSFCEV 162
           L  NR+             NL +L L  +   +  + ++  +     LK+L +  CEV
Sbjct: 78  LSENRIF-GGLDMLAEKLPNLTHLNLSGN--KLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 123 NFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDM 182
               +  L L++   +   ++ + + F +L+ LS+    +  V      P    L+  ++
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLEL 78

Query: 183 RFARIALNTSFLQIIGESMPSLKYLLLS 210
              RI      L ++ E +P+L +L LS
Sbjct: 79  SENRI---FGGLDMLAEKLPNLTHLNLS 103

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.0 bits (138), Expect = 5e-10
 Identities = 37/165 (22%), Positives = 70/165 (42%), Gaps = 22/165 (13%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
              L  L+L  N+I        +  L  L  +  L LSGN   N  +S++  L S+++L+
Sbjct: 62  LNNLIGLELKDNQI------TDLAPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLD 113

Query: 107 LLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVV 166
           L   ++    DV  L   +NL+ L L+ +   I+ +  +A    +L+ LS+   +V+ + 
Sbjct: 114 LTSTQI---TDVTPLAGLSNLQVLYLDLNQ--ITNISPLAG-LTNLQYLSIGNAQVSDL- 166

Query: 167 RGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
                 +   L        +I+  +        S+P+L  + L  
Sbjct: 167 --TPLANLSKLTTLKADDNKISDISPL-----ASLPNLIEVHLKN 204

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 30/168 (17%), Positives = 66/168 (39%), Gaps = 22/168 (13%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103
                 + +L      +        IE +  LNNL  L L  N   +  L+ L +L+ + 
Sbjct: 37  QADLDGITTLSAFGTGV------TTIEGVQYLNNLIGLELKDNQITD--LAPLKNLTKIT 88

Query: 104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN 163
            L L  N L+   +V  +    +++ L L S+   I+ +  +A    +L+ L +   ++ 
Sbjct: 89  ELELSGNPLK---NVSAIAGLQSIKTLDLTST--QITDVTPLAG-LSNLQVLYLDLNQIT 142

Query: 164 GVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
            +          +L++  +  A+++ + + L     ++  L  L    
Sbjct: 143 NI---SPLAGLTNLQYLSIGNAQVS-DLTPL----ANLSKLTTLKADD 182

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 29/165 (17%), Positives = 62/165 (37%), Gaps = 22/165 (13%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
                 +   ++ +            + L+ +  L+  G       +  + +L++L  L 
Sbjct: 18  LANAIKIAAGKSNV------TDTVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLE 69

Query: 107 LLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVV 166
           L  N++    D+  L N T +  L L  S   +  + +IA    S+K L ++  ++  V 
Sbjct: 70  LKDNQIT---DLAPLKNLTKITELEL--SGNPLKNVSAIAG-LQSIKTLDLTSTQITDV- 122

Query: 167 RGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
                    +L+   +   +I  N S L      + +L+YL +  
Sbjct: 123 --TPLAGLSNLQVLYLDLNQIT-NISPL----AGLTNLQYLSIGN 160

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 11/91 (12%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103
                 L+ L +   ++        +  L+ L+ L  L    N  ++  +S L  L +L 
Sbjct: 147 LAGLTNLQYLSIGNAQV------SDLTPLANLSKLTTLKADDNKISD--ISPLASLPNLI 198

Query: 104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLES 134
            ++L  N++    DV  L N +NL  +TL +
Sbjct: 199 EVHLKNNQIS---DVSPLANTSNLFIVTLTN 226

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 21/143 (14%), Positives = 47/143 (32%), Gaps = 16/143 (11%)

Query: 69  IERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLE 128
           I     L N   +    ++  +    +   L  + +L+     +     ++ +    NL 
Sbjct: 12  IFPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLI 66

Query: 129 YLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIA 188
            L L      I+ L  + +    +  L +S   +  V         +S++  D+   +I 
Sbjct: 67  GLEL--KDNQITDLAPLKN-LTKITELELSGNPLKNV---SAIAGLQSIKTLDLTSTQIT 120

Query: 189 LNTSFLQIIGESMPSLKYLLLSY 211
             T         + +L+ L L  
Sbjct: 121 DVTPL-----AGLSNLQVLYLDL 138

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.6 bits (137), Expect = 7e-10
 Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 17/175 (9%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103
               + L  L L +NK+      + +  L  L  LK L+L  N  ++  ++ L HL  L 
Sbjct: 86  LANLKNLGWLFLDENKV------KDLSSLKDLKKLKSLSLEHNGISD--INGLVHLPQLE 137

Query: 104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN 163
           SL L  N++    D+  L   T L+ L+LE +   IS +  +A     L+NL +S    N
Sbjct: 138 SLYLGNNKIT---DITVLSRLTKLDTLSLEDN--QISDIVPLAG-LTKLQNLYLSK---N 188

Query: 164 GVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNS 218
            +   +     K+L+  ++            Q       ++K    S  T    S
Sbjct: 189 HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 243

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 22/168 (13%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103
                 +  L L  NK+        I+ L+ L NL  L L  N   +  LSSL  L  L+
Sbjct: 64  IQYLPNVTKLFLNGNKL------TDIKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLK 115

Query: 104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN 163
           SL+L  N +    D+  L +   LE L L   +  I+ +  ++     L  LS+   +++
Sbjct: 116 SLSLEHNGIS---DINGLVHLPQLESLYL--GNNKITDITVLSR-LTKLDTLSLEDNQIS 169

Query: 164 GVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
            +           L++  +    I+ +   L      + +L  L L  
Sbjct: 170 DI---VPLAGLTKLQNLYLSKNHIS-DLRAL----AGLKNLDVLELFS 209

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 30/165 (18%), Positives = 66/165 (40%), Gaps = 22/165 (13%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
              ++ +    + I      + ++ +  L N+  L L+GN    + +  L +L +L  L 
Sbjct: 45  LNSIDQIIANNSDI------KSVQGIQYLPNVTKLFLNGN--KLTDIKPLANLKNLGWLF 96

Query: 107 LLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVV 166
           L  N+++   D+  L +   L+ L+LE +   IS +  +    P L++L +   ++  + 
Sbjct: 97  LDENKVK---DLSSLKDLKKLKSLSLEHN--GISDINGLVH-LPQLESLYLGNNKITDI- 149

Query: 167 RGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
                     L+   +   +I+            +  L+ L LS 
Sbjct: 150 --TVLSRLTKLDTLSLEDNQISDIVPL-----AGLTKLQNLYLSK 187

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.3 bits (131), Expect = 4e-09
 Identities = 32/165 (19%), Positives = 63/165 (38%), Gaps = 22/165 (13%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
           F +    +L +  +            + LN++  +  + +   +  +  + +L ++  L 
Sbjct: 23  FAETIKDNLKKKSV------TDAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 74

Query: 107 LLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVV 166
           L  N+L    D+K L N  NL +L L      +  L S+      LK+LS+    ++ + 
Sbjct: 75  LNGNKLT---DIKPLANLKNLGWLFL--DENKVKDLSSLKD-LKKLKSLSLEHNGISDI- 127

Query: 167 RGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
              G  H   LE   +   +I  + + L      +  L  L L  
Sbjct: 128 --NGLVHLPQLESLYLGNNKIT-DITVL----SRLTKLDTLSLED 165

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 22/143 (15%), Positives = 47/143 (32%), Gaps = 16/143 (11%)

Query: 69  IERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLE 128
           I            NL   S  +    +   L+S+  +    + ++    V+ +    N+ 
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVT 71

Query: 129 YLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIA 188
            L L  +   ++ ++ +A+   +L  L +     N V         K L+   +    I+
Sbjct: 72  KLFL--NGNKLTDIKPLAN-LKNLGWLFLDE---NKVKDLSSLKDLKKLKSLSLEHNGIS 125

Query: 189 LNTSFLQIIGESMPSLKYLLLSY 211
                       +P L+ L L  
Sbjct: 126 DINGL-----VHLPQLESLYLGN 143

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 6/82 (7%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
             +L++L L++N I        +  L+ L NL +L L      N  ++  ++L    ++ 
Sbjct: 177 LTKLQNLYLSKNHI------SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 230

Query: 107 LLWNRLEGSIDVKELHNFTNLE 128
                L     + +  ++    
Sbjct: 231 NTDGSLVTPEIISDDGDYEKPN 252

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 56.7 bits (137), Expect = 9e-10
 Identities = 37/178 (20%), Positives = 69/178 (38%), Gaps = 21/178 (11%)

Query: 38  YLNASLFTPFQQLESLDLTQNKIAGCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSS 95
            +    F     L +L+L  N++        I       L+ LK L L  N   +    +
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRL------TTIPNGAFVYLSKLKELWLRNNPIESIPSYA 155

Query: 96  LTHLSSLRSLNLL-WNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKN 154
              + SLR L+L    RL   I        +NL YL L  +  ++  + ++  +   L  
Sbjct: 156 FNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNL--AMCNLREIPNLTPL-IKLDE 211

Query: 155 LSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIAL--NTSFLQIIGESMPSLKYLLLS 210
           L +S   ++ +  G  F     L+   M  ++I +    +F     +++ SL  + L+
Sbjct: 212 LDLSGNHLSAIRPG-SFQGLMHLQKLWMIQSQIQVIERNAF-----DNLQSLVEINLA 263

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.2 bits (115), Expect = 8e-07
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103
            TP  +L+ LDL+ N ++             L +L+ L +  +       ++  +L SL 
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRPGS----FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258

Query: 104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLH 138
            +NL  N L   +         +LE + L  +  +
Sbjct: 259 EINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 32/142 (22%), Positives = 54/142 (38%), Gaps = 19/142 (13%)

Query: 77  NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLES-- 134
           N ++LNL  N      ++S  HL  L  L L  N +  +I++   +   NL  L L    
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR 123

Query: 135 -SSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDM----RFARIAL 189
            +++              LK L +    +   +    F    SL   D+    R + I+ 
Sbjct: 124 LTTIPNGAFVY----LSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISE 178

Query: 190 NTSFLQIIGESMPSLKYLLLSY 211
              F     E + +L+YL L+ 
Sbjct: 179 GA-F-----EGLSNLRYLNLAM 194

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 39/173 (22%), Positives = 76/173 (43%), Gaps = 19/173 (10%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98
             ASL      ++ LDL+ N ++     +    L+    L++LNLS N         L  
Sbjct: 25  ALASLRQSAWNVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYE--TLDLES 78

Query: 99  LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMS 158
           LS+LR+L+L  N +      +EL    ++E L    ++ +IS +    S     KN+ ++
Sbjct: 79  LSTLRTLDLNNNYV------QELLVGPSIETLHA--ANNNISRVS--CSRGQGKKNIYLA 128

Query: 159 FCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
             ++  +           +++ D++   I    +F ++   S  +L++L L Y
Sbjct: 129 NNKITMLRDLD-EGCRSRVQYLDLKLNEID-TVNFAELAA-SSDTLEHLNLQY 178

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.2 bits (125), Expect = 3e-08
 Identities = 31/173 (17%), Positives = 66/173 (38%), Gaps = 21/173 (12%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98
           ++A+   PF +LE L+L+ N +           L  L+ L+ L+L+ N      +  L  
Sbjct: 49  ISAADLAPFTKLELLNLSSNVL------YETLDLESLSTLRTLDLNNNY-----VQELLV 97

Query: 99  LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMS 158
             S+ +L+   N +   +           + + L ++ + +            ++ L + 
Sbjct: 98  GPSIETLHAANNNIS-RVS---CSRGQGKKNIYLANNKITMLRDLDEGC-RSRVQYLDLK 152

Query: 159 FCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
             E++ V   +      +LEH ++++  I         +      LK L LS 
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFI---YDVKGQV--VFAKLKTLDLSS 200

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 16/137 (11%)

Query: 75  LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLES 134
            N  K+  ++ +S   ++ S      +++ L+L  N L   I   +L  FT LE L L  
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNL-- 65

Query: 135 SSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFL 194
           SS  +     + S   +L+ L ++   V      Q      S+E        I+      
Sbjct: 66  SSNVLYETLDLES-LSTLRTLDLNNNYV------QELLVGPSIETLHAANNNIS------ 112

Query: 195 QIIGESMPSLKYLLLSY 211
           ++        K + L+ 
Sbjct: 113 RVSCSRGQGKKNIYLAN 129

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 29/179 (16%), Positives = 59/179 (32%), Gaps = 16/179 (8%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103
                 +E+L    N I+           SR    K + L+ N             S ++
Sbjct: 95  LLVGPSIETLHAANNNISRV-------SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147

Query: 104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN 163
            L+L  N ++     +   +   LE+L L      I  ++     F  LK L +S  ++ 
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNL--QYNFIYDVKGQVV-FAKLKTLDLSSNKLA 204

Query: 164 GVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL 222
            +  G  F     +    +R  ++      ++       +L++  L  +     + R  
Sbjct: 205 FM--GPEFQSAAGVTWISLRNNKL----VLIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.0 bits (109), Expect = 4e-06
 Identities = 24/180 (13%), Positives = 56/180 (31%), Gaps = 11/180 (6%)

Query: 45  TPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRS 104
             F +L++LDL+ NK+A  +  E          +  ++L  N     I  +L    +L  
Sbjct: 188 VVFAKLKTLDLSSNKLAF-MGPE----FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241

Query: 105 LNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNG 164
            +L  N                ++ +  ++    ++         P+L +     CE   
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCE--- 297

Query: 165 VVRGQGFPHFKSLEHFDMRFARIALNT-SFLQIIGESMPSLKYLLLSYSTLGTNSSRILH 223
            +         +L+  +        +    L+   E+    + +        T   ++  
Sbjct: 298 DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTL 357

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 17/164 (10%), Positives = 53/164 (32%), Gaps = 27/164 (16%)

Query: 48  QQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNL 107
           ++L  L+   N++ G      +        L  LNL+ N       +       + +L+ 
Sbjct: 330 KKLGMLECLYNQLEGK-----LPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSF 384

Query: 108 LWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVR 167
             N+L+   ++ +  + + +  +    + +     ++   + P+                
Sbjct: 385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG------------ 432

Query: 168 GQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
                   ++   ++   +I   + F + +  +   L  + L  
Sbjct: 433 -------INVSSINLSNNQI---SKFPKELFSTGSPLSSINLMG 466

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 23/162 (14%), Positives = 51/162 (31%), Gaps = 15/162 (9%)

Query: 5   TDCCQWER---VECSNTTGRVIALDLSYIY-SGEYSWYLNASLFTPFQQLESLDLTQNKI 60
            +   W     V  ++  GRV  L L     SG     +  ++     +LE L L  +  
Sbjct: 64  KELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGR----VPDAIGQ-LTELEVLALGSHGE 117

Query: 61  AGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT--HLSSLRSLNLLWNRLEGSIDV 118
                  G + +S   + +        +  + +        S L    +  +  + SI  
Sbjct: 118 KVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK- 176

Query: 119 KELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFC 160
           K          +   S+++   + +++  +   L+   M   
Sbjct: 177 KSSRITLKDTQIGQLSNNIT-FVSKAVMRL-TKLRQFYMGNS 216

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 32/197 (16%), Positives = 61/197 (30%), Gaps = 35/197 (17%)

Query: 48  QQLESLDLTQNKIAGCVEN---EGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRS 104
             + ++D + N+I                +  N+  +NLS N  +       +  S L S
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461

Query: 105 LNLLWNRLEG------SIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMS 158
           +NL+ N L          + +   N   L  + L  + L        A+  P L  + +S
Sbjct: 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLS 521

Query: 159 FCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGES------------------ 200
           +   +         +  +L+ F +R  R A     L+   E                   
Sbjct: 522 YNSFSKFPTQPL--NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579

Query: 201 ------MPSLKYLLLSY 211
                  P++  L +  
Sbjct: 580 KVNEKITPNISVLDIKD 596

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 13/146 (8%), Positives = 42/146 (28%), Gaps = 7/146 (4%)

Query: 72  LSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLT 131
           L+    +  L+L G   +  +  ++  L+ L  L L  +  + +  +      +      
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 132 LESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNT 191
                     +    +          S    + +         K      ++  +I   +
Sbjct: 137 Q----KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS 192

Query: 192 SFLQIIGES---MPSLKYLLLSYSTL 214
           + +  + ++   +  L+   +  S  
Sbjct: 193 NNITFVSKAVMRLTKLRQFYMGNSPF 218

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 33/175 (18%), Positives = 54/175 (30%), Gaps = 41/175 (23%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFN-------NSILSSLTHL 99
              + S++L+ N+I+   +       S  + L  +NL GN               +  + 
Sbjct: 432 GINVSSINLSNNQISKFPKEL----FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487

Query: 100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSF 159
             L S++L +N+L    D         L  + L  S    S             N S   
Sbjct: 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL--SYNSFS------KFPTQPLNSS--- 536

Query: 160 CEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGES---MPSLKYLLLSY 211
                           +L+ F +R  R A     L+   E     PSL  L +  
Sbjct: 537 ----------------TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 20/186 (10%), Positives = 56/186 (30%), Gaps = 27/186 (14%)

Query: 48  QQLESLDLTQNKIAGCVENEGIE---------------RLSRLNNLKMLNLSGNSFNNSI 92
            +L    +  +        E  E               +   L +L  + +        +
Sbjct: 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265

Query: 93  LSSLTHLSSLRSLNLLWNRLEGSIDVK-------ELHNFTNLEYLTLESSSLHISLLQSI 145
            + L  L  ++ +N+  NR      +K       +      ++ + +  ++L    +++ 
Sbjct: 266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS 325

Query: 146 ASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLK 205
                 L  L   + ++ G +    F     L   ++ + +I   T            ++
Sbjct: 326 LQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQI---TEIPANFCGFTEQVE 380

Query: 206 YLLLSY 211
            L  ++
Sbjct: 381 NLSFAH 386

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 18/177 (10%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSL 96
           LN   F  F  LE L+L +N +        +E    + L NL+ L L  N      L   
Sbjct: 47  LNQDEFASFPHLEELELNENIV------SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF 100

Query: 97  THLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIA-SIFPSLKNL 155
           T LS+L  L++  N++   +      +  NL+ L +  +   +  +   A S   SL+ L
Sbjct: 101 TGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDN--DLVYISHRAFSGLNSLEQL 157

Query: 156 SMSFCEVNGVVRGQGFPHFKSLEHFDMRFARI-ALNTSFLQIIGESMPSLKYLLLSY 211
           ++  C +   +  +   H   L    +R   I A+         + +  LK L +S+
Sbjct: 158 TLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSF----KRLYRLKVLEISH 209

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 12/173 (6%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98
           +     +    L  L L    I   + +       RL  LK+L +S   + +++  +  +
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNIN-AIRDYS---FKRLYRLKVLEISHWPYLDTMTPNCLY 222

Query: 99  LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIA-SIFPSLKNLSM 157
             +L SL++    L  ++    + +   L +L L  S   IS ++         L+ + +
Sbjct: 223 GLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNL--SYNPISTIEGSMLHELLRLQEIQL 279

Query: 158 SFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLS 210
              ++  V     F     L   ++   ++   T+  + +  S+ +L+ L+L 
Sbjct: 280 VGGQLAVVEPY-AFRGLNYLRVLNVSGNQL---TTLEESVFHSVGNLETLILD 328

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 22/139 (15%), Positives = 49/139 (35%), Gaps = 14/139 (10%)

Query: 77  NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLES-- 134
             ++L+L  N               L  L L  N +  +++    +N  NL  L L S  
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNR 91

Query: 135 -SSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIA-LNTS 192
              + + +   +     +L  L +S  ++  ++    F    +L+  ++    +  ++  
Sbjct: 92  LKLIPLGVFTGL----SNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHR 146

Query: 193 FLQIIGESMPSLKYLLLSY 211
                   + SL+ L L  
Sbjct: 147 AFS----GLNSLEQLTLEK 161

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 38  YLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 97
            +  S+     +L+ + L   ++A  VE         LN L++LN+SGN       S   
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQLA-VVEPYA---FRGLNYLRVLNVSGNQLTTLEESVFH 317

Query: 98  HLSSLRSLNLLWNRL 112
            + +L +L L  N L
Sbjct: 318 SVGNLETLILDSNPL 332

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 55.3 bits (133), Expect = 2e-09
 Identities = 25/142 (17%), Positives = 43/142 (30%), Gaps = 7/142 (4%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFN---NSILSS 95
            +      F  L +LDL+ N   G           +   L++L L             + 
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 96  LTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNL 155
                 L+ L+L  N L  +         + L  L L  + L     Q    +   L  L
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK----QVPKGLPAKLSVL 279

Query: 156 SMSFCEVNGVVRGQGFPHFKSL 177
            +S+  ++        P   +L
Sbjct: 280 DLSYNRLDRNPSPDELPQVGNL 301

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 30/174 (17%), Positives = 56/174 (32%), Gaps = 11/174 (6%)

Query: 43  LFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL 102
           L      L  L+L     A         +      LK+L+++     N     +    +L
Sbjct: 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175

Query: 103 RSLNLLWNRLEGSIDVKE---LHNFTNLEYLTLESSSLHI--SLLQSIASIFPSLKNLSM 157
            +L+L  N   G   +        F  L+ L L ++ +     +  ++A+    L+ L +
Sbjct: 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235

Query: 158 SFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
           S   +              L   ++ F  +       Q+       L  L LSY
Sbjct: 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK------QVPKGLPAKLSVLDLSY 283

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 34/180 (18%), Positives = 57/180 (31%), Gaps = 6/180 (3%)

Query: 49  QLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLL 108
            LE L    +  A   +   I +   L  L +      S        +  +S L+ L L 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 109 WNRLEGSIDVKEL-HNFTNLEYLTLESSSL---HISLLQSIASIFPSLKNLSMSFCEVNG 164
              + G+     L     +L  L L + S       L +    + P LK LS++      
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 165 VVRGQGFPHFKSLEHFDMRFARIALNTSFL-QIIGESMPSLKYLLLSYSTLGTNSSRILH 223
               Q    F +L   D+           +  +     P+L+ L L  + + T S     
Sbjct: 164 FSCEQ-VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.9 bits (132), Expect = 5e-09
 Identities = 31/208 (14%), Positives = 55/208 (26%), Gaps = 37/208 (17%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLN---------------------- 76
           +         Q+E L  + NK+         + +  +                       
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669

Query: 77  ----NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLE------GSIDVKELHNFTN 126
               N   + LS N             S + ++ L  N +                N   
Sbjct: 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729

Query: 127 LEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFAR 186
           L  + L  + L        A+  P L N+ +S+   +         +   L+ F +R  R
Sbjct: 730 LTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL--NSSQLKAFGIRHQR 787

Query: 187 IALNTSFLQIIGES---MPSLKYLLLSY 211
            A     L+         PSL  L +  
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGS 815

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 8e-09
 Identities = 20/172 (11%), Positives = 48/172 (27%), Gaps = 15/172 (8%)

Query: 48  QQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNL 107
            +L  LD   NK+        +E       L  L L  N               +  L  
Sbjct: 573 VKLGLLDCVHNKV------RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF 626

Query: 108 LWNRLEGSIDVKELHNFTNLEYLTLES---SSLHISLLQSIASI-FPSLKNLSMSFCEVN 163
             N+L+   ++    +   +  +        S   ++  S+      +   +++S+ E+ 
Sbjct: 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ 686

Query: 164 GVVRGQGFPHFKSLEHFDMRFARI----ALNTSFLQIIGESMPSLKYLLLSY 211
                  F     +    +    +      +        ++   L  + L +
Sbjct: 687 KFPTEL-FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.8 bits (124), Expect = 6e-08
 Identities = 23/188 (12%), Positives = 59/188 (31%), Gaps = 19/188 (10%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFN---------NSILS 94
           ++  + L  ++L        + +     L  L  L+ LN++ N              +  
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDF----LYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 95  SLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKN 154
                  ++   + +N LE       L     L  L        +  L++  +    L +
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDC--VHNKVRHLEAFGT-NVKLTD 599

Query: 155 LSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTL 214
           L + + ++  +           +E       ++    +      +S+  +  +  SY+ +
Sbjct: 600 LKLDYNQIEEIPEDF-CAFTDQVEGLGFSHNKLKYIPNIFNA--KSVYVMGSVDFSYNKI 656

Query: 215 GTNSSRIL 222
           G+    I 
Sbjct: 657 GSEGRNIS 664

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 19/190 (10%), Positives = 60/190 (31%), Gaps = 9/190 (4%)

Query: 36  SWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSS 95
           +W   +          + +  +  +    +  G++ L     +  L+L+G      +  +
Sbjct: 285 NWRYYSGTINNTIHSLNWNFNKE-LDMWGDQPGVD-LDNNGRVTGLSLAGFGAKGRVPDA 342

Query: 96  LTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNL 155
           +  L+ L+ L+   +    S  +      T  +        + +   +        L   
Sbjct: 343 IGQLTELKVLSFGTHSETVSGRLFGDEELT-PDMSEERKHRIRMHYKKMFLDYDQRLNLS 401

Query: 156 SMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGES---MPSLKYLLLSYS 212
            +     + + R       K      ++  +I   T+ +  I ++   +  L+ +  + S
Sbjct: 402 DLLQ---DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS 458

Query: 213 TLGTNSSRIL 222
               ++  + 
Sbjct: 459 PFTYDNIAVD 468

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.1 bits (117), Expect = 4e-07
 Identities = 21/163 (12%), Positives = 47/163 (28%), Gaps = 7/163 (4%)

Query: 5   TDCCQWERVECS--NTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAG 62
            +   W        +  GRV  L L    +G  +            +L+ L    +    
Sbjct: 306 KELDMWGDQPGVDLDNNGRVTGLSL----AGFGAKGRVPDAIGQLTELKVLSFGTHSETV 361

Query: 63  CVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELH 122
                G E L+   + +  +     +    L     L+    L    NR      +K+  
Sbjct: 362 SGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD- 420

Query: 123 NFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGV 165
           +  +L+   + + +  I+ +         L+ +  +       
Sbjct: 421 SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYD 463

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 28/196 (14%), Positives = 63/196 (32%), Gaps = 16/196 (8%)

Query: 23  IALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLN 82
           +  D+S         +         Q+L   DL Q+ I    E + I++ SR++ LK   
Sbjct: 371 LTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRIS-LKDTQ 429

Query: 83  LSGNSFN-NSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISL 141
           +   +     I  ++  L+ L+ +    +         +  +  +      E+  L  S 
Sbjct: 430 IGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN 489

Query: 142 LQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDM---RFARIALNTSFLQIIG 198
           L         L ++ +  C     +          L+  ++   R    A   +    + 
Sbjct: 490 L-------KDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLA 541

Query: 199 ES---MPSLKYLLLSY 211
           +     P ++   + Y
Sbjct: 542 DDEDTGPKIQIFYMGY 557

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 17/115 (14%), Positives = 34/115 (29%), Gaps = 6/115 (5%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEG-IERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL 102
            T    L ++D++ N  +          +L         +  GN       + +T   SL
Sbjct: 749 ATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808

Query: 103 RSLNLLWNRLEGSIDVKELHNFTNLEYLTLES-SSLHISLLQSIASIFPSLKNLS 156
             L +  N +    +         L  L +    ++ I +      I   +  L 
Sbjct: 809 IQLQIGSNDIRKVDE----KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLL 859

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 32/188 (17%), Positives = 63/188 (33%), Gaps = 29/188 (15%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98
           ++   F     ++ L +  N I     +        +  L +L L  N  ++       +
Sbjct: 84  IDTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHN 139

Query: 99  LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLES---SSLHISLLQSIASIF------ 149
              L +L++  N LE  I+       T+L+ L L S   + + +SL+ S+          
Sbjct: 140 TPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL 198

Query: 150 ------PSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPS 203
                  +++ L  S   +N V           L    ++   +            + P 
Sbjct: 199 STLAIPIAVEELDASHNSINVVRGPV----NVELTILKLQHNNLTDTAWL-----LNYPG 249

Query: 204 LKYLLLSY 211
           L  + LSY
Sbjct: 250 LVEVDLSY 257

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 10/112 (8%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
             +L  L L  N +           L     L  ++LS N     +      +  L  L 
Sbjct: 225 NVELTILKLQHNNL------TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278

Query: 107 LLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMS 158
           +  NRL  +++         L+ L L  S  H+  ++     F  L+NL + 
Sbjct: 279 ISNNRLV-ALN-LYGQPIPTLKVLDL--SHNHLLHVERNQPQFDRLENLYLD 326

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 13/118 (11%)

Query: 42  SLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 101
           +    +  L  +DL+ N++    E        ++  L+ L +S N    ++      + +
Sbjct: 242 AWLLNYPGLVEVDLSYNEL----EKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPT 296

Query: 102 LRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSI-ASIFPSLKNLSMS 158
           L+ L+L  N L   ++ +    F  LE L L+ +S     + ++  S   +LKNL++S
Sbjct: 297 LKVLDLSHNHLL-HVE-RNQPQFDRLENLYLDHNS-----IVTLKLSTHHTLKNLTLS 347

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 32/173 (18%), Positives = 62/173 (35%), Gaps = 13/173 (7%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103
                  + +    + +           L     +++LNL+          +  +  +++
Sbjct: 41  DITLNNQKIVTFKNSTMRKLPAAL----LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 96

Query: 104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN 163
            L + +N +   +      N   L  L LE + L  SL + I    P L  LSMS   + 
Sbjct: 97  KLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE 154

Query: 164 GVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGT 216
             +    F    SL++  +   R+        +    +PSL +  +SY+ L T
Sbjct: 155 -RIEDDTFQATTSLQNLQLSSNRLT------HVDLSLIPSLFHANVSYNLLST 200

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 15/127 (11%)

Query: 38  YLNASLFTPFQQLESLDLTQNKIAGCVENEGIER-LSRLNNLKMLNLSGNSFNNSILSSL 96
            +    F   Q+LE L ++ N++        +      +  LK+L+LS N     +  + 
Sbjct: 262 KIMYHPFVKMQRLERLYISNNRL------VALNLYGQPIPTLKVLDLSHNHL-LHVERNQ 314

Query: 97  THLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLS 156
                L +L L  N +  ++    L     L+ LTL  +    +   S+ ++F ++   +
Sbjct: 315 PQFDRLENLYLDHNSIV-TLK---LSTHHTLKNLTLSHNDWDCN---SLRALFRNVARPA 367

Query: 157 MSFCEVN 163
           +   + +
Sbjct: 368 VDDADQH 374

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.0 bits (127), Expect = 2e-08
 Identities = 34/200 (17%), Positives = 68/200 (34%), Gaps = 10/200 (5%)

Query: 25  LDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERL-SRLNNLKMLNL 83
           LDL      + S +  +     +  L SL+++   +A  V    +ERL +R  NLK L L
Sbjct: 161 LDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC--LASEVSFSALERLVTRCPNLKSLKL 218

Query: 84  SGNSFNNSILSSLTHLSSLRSLNL--LWNRLEGSIDVKELHNFTNLEYLTLESSSLHIS- 140
           +       + + L     L  L        +   +        +  + L   S       
Sbjct: 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP 278

Query: 141 -LLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGE 199
             L ++ S+   L  L++S+  V      +       L+   +      +  + L+++  
Sbjct: 279 AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD---YIEDAGLEVLAS 335

Query: 200 SMPSLKYLLLSYSTLGTNSS 219
           +   L+ L +  S       
Sbjct: 336 TCKDLRELRVFPSEPFVMEP 355

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 40/223 (17%), Positives = 78/223 (34%), Gaps = 28/223 (12%)

Query: 7   CCQWERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVEN 66
           C  W  +E          + +   Y+        A++   F ++ S++L           
Sbjct: 34  CKSWYEIERWCRR----KVFIGNCYA-----VSPATVIRRFPKVRSVELK---------- 74

Query: 67  EGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTN 126
            G    +  N +   +  G      I +  +  + L  + L    +          +F N
Sbjct: 75  -GKPHFADFNLV--PDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKN 131

Query: 127 LEYLTLES-SSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHF----KSLEHFD 181
            + L L S        L +IA+   +LK L +   +V+ V  G    HF     SL   +
Sbjct: 132 FKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVS-GHWLSHFPDTYTSLVSLN 190

Query: 182 MRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRILHQ 224
           +      ++ S L+ +    P+LK L L+ +      + +L +
Sbjct: 191 ISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR 233

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 25/191 (13%), Positives = 60/191 (31%), Gaps = 25/191 (13%)

Query: 41  ASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 100
            ++++   +L +L+L+   +      + ++ L +   L+ L +     +  +    +   
Sbjct: 282 PAVYSVCSRLTTLNLSYATV---QSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCK 338

Query: 101 SLRSLNLLWNRLEGSIDVKEL---------HNFTNLEYLTLESSSLHISLLQSIASIFPS 151
            LR L +  +          L              LE +      +  + L +IA   P+
Sbjct: 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPN 398

Query: 152 LKNLSMSFCEVNGVVRGQGFP----------HFKSLEHFDMRFARIALNTSFLQIIGESM 201
           +    +   E          P          H K L    +      L     + IG   
Sbjct: 399 MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG---LLTDKVFEYIGTYA 455

Query: 202 PSLKYLLLSYS 212
             ++ L ++++
Sbjct: 456 KKMEMLSVAFA 466

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 25/192 (13%), Positives = 67/192 (34%), Gaps = 20/192 (10%)

Query: 48  QQLESLDLTQNKIAGCVEN-----EGIERLSR-LNNLKMLNLSGNSFNNSILSSL-THLS 100
           + L  L +  ++      N     +G+  +S     L+ +        N+ L ++  +  
Sbjct: 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRP 397

Query: 101 SLRSLNLLWNRLEGSIDVKE----------LHNFTNLEYLTLESSSLHISLLQSIASIFP 150
           ++    L     +    +            + +  +L  L+L S  L   + + I +   
Sbjct: 398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL-SGLLTDKVFEYIGTYAK 456

Query: 151 SLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLS 210
            ++ LS++F   + +          SL   ++R          L      + +++ L +S
Sbjct: 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF--GDKALLANASKLETMRSLWMS 514

Query: 211 YSTLGTNSSRIL 222
             ++   + ++L
Sbjct: 515 SCSVSFGACKLL 526

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 16/120 (13%), Positives = 42/120 (35%), Gaps = 7/120 (5%)

Query: 41  ASLFTPFQQLESLDLTQNKIAGCVENEGIERLSR-LNNLKMLNLSGNSFNNSILSSL-TH 98
            ++    + L  L L     +G + ++  E +      ++ML+++    ++  +  + + 
Sbjct: 425 GAIVEHCKDLRRLSL-----SGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSG 479

Query: 99  LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMS 158
             SLR L +          +        +  L + S S+     + +    P L    + 
Sbjct: 480 CDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVID 539

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 38.7 bits (90), Expect = 9e-04
 Identities = 20/129 (15%), Positives = 42/129 (32%), Gaps = 7/129 (5%)

Query: 41  ASLFTPFQQLESLDLTQNKIAGC------VENEGIERLSRLN-NLKMLNLSGNSFNNSIL 93
            ++      +    L   +            + G   +     +L+ L+LSG   +    
Sbjct: 390 ITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFE 449

Query: 94  SSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLK 153
              T+   +  L++ +           L    +L  L +         L + AS   +++
Sbjct: 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR 509

Query: 154 NLSMSFCEV 162
           +L MS C V
Sbjct: 510 SLWMSSCSV 518

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 38/200 (19%), Positives = 65/200 (32%), Gaps = 38/200 (19%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSF---------- 88
           +    F   + L +L L  NKI+           + L  L+ L LS N            
Sbjct: 67  IKDGDFKNLKNLHTLILINNKISKISPGA----FAPLVKLERLYLSKNQLKELPEKMPKT 122

Query: 89  -------NNSILS----SLTHLSSLRSLNLLWNRL-EGSIDVKELHNFTNLEYLTLESSS 136
                   N I          L+ +  + L  N L    I+         L Y+ +  + 
Sbjct: 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT- 181

Query: 137 LHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIAL--NTSFL 194
            +I+ +     + PSL  L +   ++   V         +L    + F  I+   N S  
Sbjct: 182 -NITTIP--QGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSL- 236

Query: 195 QIIGESMPSLKYLLLSYSTL 214
                + P L+ L L+ + L
Sbjct: 237 ----ANTPHLRELHLNNNKL 252

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.8 bits (122), Expect = 8e-08
 Identities = 33/196 (16%), Positives = 66/196 (33%), Gaps = 44/196 (22%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIER--LSRLNNLKMLNLSGNSFNNSI--------LSSL 96
            + L+ L + +N+I        + +   + LN + ++ L  N   +S         +  L
Sbjct: 120 PKTLQELRVHENEI------TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173

Query: 97  THL---------------SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLES---SSLH 138
           +++                SL  L+L  N++   +D   L    NL  L L     S++ 
Sbjct: 174 SYIRIADTNITTIPQGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVD 232

Query: 139 ISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDM---RFARIALNTSFLQ 195
              L +     P L+ L ++  ++  V    G    K ++   +     + I  N     
Sbjct: 233 NGSLANT----PHLRELHLNNNKLVKVPG--GLADHKYIQVVYLHNNNISAIGSNDFCPP 286

Query: 196 IIGESMPSLKYLLLSY 211
                  S   + L  
Sbjct: 287 GYNTKKASYSGVSLFS 302

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 17/122 (13%)

Query: 36  SWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSR--LNNLKMLNLSGNSFNNSIL 93
           S  +    F   ++L  + +    I           + +    +L  L+L GN       
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNI---------TTIPQGLPPSLTELHLDGNKITKVDA 209

Query: 94  SSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLK 153
           +SL  L++L  L L +N +  ++D   L N  +L  L L ++      L  +       K
Sbjct: 210 ASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNK-----LVKVPGGLADHK 263

Query: 154 NL 155
            +
Sbjct: 264 YI 265

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 24/140 (17%), Positives = 51/140 (36%), Gaps = 17/140 (12%)

Query: 77  NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSS 136
           +  +L+L  N           +L +L +L L+ N++   I          LE L L  + 
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQ 111

Query: 137 LHISLLQSI-ASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIAL----NT 191
                L+ +   +  +L+ L +   E+  V +   F     +   ++    +      N 
Sbjct: 112 -----LKELPEKMPKTLQELRVHENEITKVRKSV-FNGLNQMIVVELGTNPLKSSGIENG 165

Query: 192 SFLQIIGESMPSLKYLLLSY 211
           +F     + M  L Y+ ++ 
Sbjct: 166 AF-----QGMKKLSYIRIAD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 27/108 (25%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNS------------------- 87
            +  + L L+ N I      E I  LS + NL++L+L  N                    
Sbjct: 47  LKACKHLALSTNNI------EKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100

Query: 88  FNNSI--LSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLE 133
             N I  LS +  L +LR L +  N++    ++ +L     LE L L 
Sbjct: 101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 16/98 (16%)

Query: 43  LFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNN-SILSSLTHLSS 101
           L      LE L ++ N+I        +  + +L NL++L +S N   N   +  L  L  
Sbjct: 88  LDAVADTLEELWISYNQI------ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141

Query: 102 LRSLNLLWNRLEGSIDVKE---------LHNFTNLEYL 130
           L  L L  N L                 +    NL+ L
Sbjct: 142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 23/165 (13%)

Query: 52  SLDLTQNKIAGCVENEGIER-LSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWN 110
            L      I      E ++  LS L   K L LS N+     +SSL+ + +LR L+L  N
Sbjct: 29  ELHGMIPPI------EKMDATLSTLKACKHLALSTNNI--EKISSLSGMENLRILSLGRN 80

Query: 111 RLEGSIDVKELHNFTN-LEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQ 169
            ++    ++ L    + LE L +  S   I+ L  I     +L+ L MS  ++       
Sbjct: 81  LIK---KIENLDAVADTLEELWI--SYNQIASLSGIEK-LVNLRVLYMSNNKITNWGEID 134

Query: 170 GFPHFKSLEHFDM-------RFARIALNTSFLQIIGESMPSLKYL 207
                  LE   +        +      + +   + + +P+LK L
Sbjct: 135 KLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 29/165 (17%), Positives = 62/165 (37%), Gaps = 23/165 (13%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
                  +L +  +        +     L+ ++  N   ++  +  L+ +   ++L+ L+
Sbjct: 18  LANAVKQNLGKQSV------TDLVSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELH 69

Query: 107 LLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVV 166
           L  N++    D+  L + T LE L++  +   +  L  I S    L  L +   E+    
Sbjct: 70  LSHNQIS---DLSPLKDLTKLEELSV--NRNRLKNLNGIPS--ACLSRLFLDNNELRDT- 121

Query: 167 RGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
                 H K+LE   +R  ++  +   L      +  L+ L L  
Sbjct: 122 --DSLIHLKNLEILSIRNNKLK-SIVML----GFLSKLEVLDLHG 159

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 31/135 (22%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNS-----------------FN 89
           F  L+ L L+ N+I        +  L  L  L+ L+++ N                   N
Sbjct: 62  FTNLKELHLSHNQI------SDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDN 115

Query: 90  NSI--LSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIAS 147
           N +    SL HL +L  L++  N+L+    +  L   + LE L L      I+    +  
Sbjct: 116 NELRDTDSLIHLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDL--HGNEITNTGGLTR 170

Query: 148 IFPSLKNLSMSFCEV 162
               +  + ++  + 
Sbjct: 171 -LKKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 33/165 (20%), Positives = 58/165 (35%), Gaps = 23/165 (13%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
              +++ +   + I      + +  +    NLK L+LS N    S LS L  L+ L  L+
Sbjct: 40  LSGVQNFNGDNSNI------QSLAGMQFFTNLKELHLSHN--QISDLSPLKDLTKLEELS 91

Query: 107 LLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVV 166
           +  NRL+         N   +    L    L  + L+   S+   LKNL +     N + 
Sbjct: 92  VNRNRLK---------NLNGIPSACLSRLFLDNNELRDTDSL-IHLKNLEILSIRNNKLK 141

Query: 167 RGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
                     LE  D+    I             +  + ++ L+ 
Sbjct: 142 SIVMLGFLSKLEVLDLHGNEITNTGGL-----TRLKKVNWIDLTG 181

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 8/95 (8%)

Query: 69  IERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLE 128
           +     L N    NL   S  +  L S   LS +++ N   + ++    +  +  FTNL+
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLK 66

Query: 129 YLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN 163
            L L  S   IS L  +      L+ LS++   + 
Sbjct: 67  ELHL--SHNQISDLSPLKD-LTKLEELSVNRNRLK 98

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 38.5 bits (90), Expect = 9e-04
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 49  QLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLL 108
           +LE LDL  N+I           L+RL  +  ++L+G    N  +     L    ++   
Sbjct: 151 KLEVLDLHGNEI------TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDP 204

Query: 109 WNRLEGSIDVKELHNFTNLE 128
             R      +    ++ +  
Sbjct: 205 DGRWISPYYISNGGSYVDGC 224

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 6e-08
 Identities = 48/247 (19%), Positives = 75/247 (30%), Gaps = 83/247 (33%)

Query: 18  TTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENE---------- 67
           T  + +   LS   +   S   ++   TP    E   L   K   C   +          
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPD---EVKSL-LLKYLDCRPQDLPREVLTTNP 327

Query: 68  ----GI-----ERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS--LRS------------ 104
                I     + L+  +N K +N   +     I SSL  L     R             
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNC--DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385

Query: 105 ------LNLLWNRLEGSID---VKELHNFTNLE-------------YLTL-----ESSSL 137
                 L+L+W  +  S     V +LH ++ +E             YL L        +L
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445

Query: 138 HISLLQS--IASIFP----SLKNLSMSFCEVNGVVRGQGFPHFKSLEH---FDMRFARIA 188
           H S++    I   F         L   F    G        H K++EH     + F  + 
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-------HLKNIEHPERMTL-FRMVF 497

Query: 189 LNTSFLQ 195
           L+  FL+
Sbjct: 498 LDFRFLE 504

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 16/121 (13%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIER--LSRLNNLKMLNLSGNSFNNSI-LSS 95
           + A+ F   + L  L L  N +A       I+    + L  L+ L+LS N+   S+  ++
Sbjct: 47  VPAASFRACRNLTILWLHSNVLA------RIDAAAFTGLALLEQLDLSDNAQLRSVDPAT 100

Query: 96  LTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIAS-IFPSLKN 154
              L  L +L+L    L+  +          L+YL L+ ++     LQ++    F  L N
Sbjct: 101 FHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA-----LQALPDDTFRDLGN 154

Query: 155 L 155
           L
Sbjct: 155 L 155

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 9/172 (5%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98
           ++A+ FT    LE LDL+ N     V+         L  L  L+L               
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPAT---FHGLGRLHTLHLDRCGLQELGPGLFRG 127

Query: 99  LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMS 158
           L++L+ L L  N L+ ++      +  NL +L L  + +  S+ +       SL  L + 
Sbjct: 128 LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLH 185

Query: 159 FCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLS 210
              V  V     F     L    +    +   ++        + +L+YL L+
Sbjct: 186 QNRVAHVHPH-AFRDLGRLMTLYLFANNL---SALPTEALAPLRALQYLRLN 233

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 9/103 (8%)

Query: 38  YLNASLFTPFQQLESLDLTQNKIAGCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSS 95
            ++ + F    +L +L L +  +      + +       L  L+ L L  N+       +
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGL------QELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 96  LTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLH 138
              L +L  L L  NR+  S+  +      +L+ L L  + + 
Sbjct: 149 FRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA 190

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 77  NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSS 136
             + + L GN  ++   +S     +L  L L  N L   ID         LE L L S +
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDL-SDN 90

Query: 137 LHISLLQSIASIFPSLKNL 155
             +  +    + F  L  L
Sbjct: 91  AQLRSVD--PATFHGLGRL 107

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 18/122 (14%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL-- 96
           L +  F  F +L+ LDL++ +I      +G      L++L  L L+GN      + SL  
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQ--TIEDGA--YQSLSHLSTLILTGNP-----IQSLAL 93

Query: 97  ---THLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLK 153
              + LSSL+ L  +   L  S++   + +   L+ L +  +   I   +     F +L 
Sbjct: 94  GAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNV--AHNLIQSFKL-PEYFSNLT 149

Query: 154 NL 155
           NL
Sbjct: 150 NL 151

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 14/118 (11%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98
            + +   P+ +L  L+L + ++        ++    L  L  L+LS N    S+      
Sbjct: 46  FSLATLMPYTRLTQLNLDRAELT------KLQVDGTLPVLGTLDLSHNQL-QSLPLLGQT 98

Query: 99  LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSI-ASIFPSLKNL 155
           L +L  L++ +NRL  S+ +  L     L+ L      L  + L+++   +      L
Sbjct: 99  LPALTVLDVSFNRLT-SLPLGALRGLGELQEL-----YLKGNELKTLPPGLLTPTPKL 150

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 29/120 (24%), Positives = 42/120 (35%), Gaps = 25/120 (20%)

Query: 42  SLFTPFQQLESLDLTQNKIAGCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSL--- 96
            L      L  LD++ N++        +    L  L  L+ L L GN      L +L   
Sbjct: 94  LLGQTLPALTVLDVSFNRL------TSLPLGALRGLGELQELYLKGNE-----LKTLPPG 142

Query: 97  --THLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSI-ASIFPSLK 153
             T    L  L+L  N L   +    L+   NL+ L      L  + L +I    F S  
Sbjct: 143 LLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTL-----LLQENSLYTIPKGFFGSHL 196

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 23/149 (15%), Positives = 48/149 (32%), Gaps = 10/149 (6%)

Query: 38  YLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 97
            +    F     LE L++  + +    E +    L  + N+  L L        +   + 
Sbjct: 164 KIQRKDFAGLTFLEELEIDASDLQ-SYEPKS---LKSIQNVSHLILHMKQHILLLEIFVD 219

Query: 98  HLSSLRSLNLLWNRLEG----SIDVKELHNFTNLEYLT-LESSSLHISLLQSIASIFPSL 152
             SS+  L L    L+      +   E ++         ++ +   +  +  + +    L
Sbjct: 220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL 279

Query: 153 KNLSMSFCEVNGVVRGQGFPHFKSLEHFD 181
             L  S  ++  V  G  F    SL+   
Sbjct: 280 LELEFSRNQLKSVPDGI-FDRLTSLQKIW 307

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 27/201 (13%), Positives = 65/201 (32%), Gaps = 35/201 (17%)

Query: 39  LNASLFTPFQQLESLDLTQNKIA-----------------GCVENEGIERLS-----RLN 76
           L++S F P   L  L+L  N                         +   ++       L 
Sbjct: 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT 174

Query: 77  NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSS 136
            L+ L +  +   +    SL  + ++  L L   +    +    +   +++E L L  + 
Sbjct: 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTD 233

Query: 137 LHISLLQSIASI-------FPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIAL 189
           L       +++          + +N+ ++   +  V++         L   +    ++  
Sbjct: 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK--LLNQISGLLELEFSRNQL-- 289

Query: 190 NTSFLQIIGESMPSLKYLLLS 210
             S    I + + SL+ + L 
Sbjct: 290 -KSVPDGIFDRLTSLQKIWLH 309

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 32/154 (20%), Positives = 56/154 (36%), Gaps = 18/154 (11%)

Query: 77  NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLES-- 134
            +K L+LS N       S L    +L++L L  N +  +I+     +  +LE+L L    
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY 111

Query: 135 -SSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSF 193
            S+L  S  + +     SL  L++       +     F H   L+   +       N   
Sbjct: 112 LSNLSSSWFKPL----SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV------GNMDT 161

Query: 194 LQIIGE----SMPSLKYLLLSYSTLGTNSSRILH 223
              I       +  L+ L +  S L +   + L 
Sbjct: 162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.2 bits (117), Expect = 4e-07
 Identities = 38/208 (18%), Positives = 69/208 (33%), Gaps = 45/208 (21%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVEN--EGIERLSRLN------------------NL 78
           L A+L   F+Q+E L+L   +I             + +L                    L
Sbjct: 66  LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125

Query: 79  KMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLES---S 135
            +L L  N  ++       +   L +L++  N LE  I+       T+L+ L L S   +
Sbjct: 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT 184

Query: 136 SLHISLLQSIASIF------------PSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMR 183
            + +SL+ S+                 +++ L  S   +N V           L    ++
Sbjct: 185 HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV----NVELTILKLQ 240

Query: 184 FARIALNTSFLQIIGESMPSLKYLLLSY 211
              +            + P L  + LSY
Sbjct: 241 HNNLTDTAWL-----LNYPGLVEVDLSY 263

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 13/168 (7%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103
                  + +    + +           L     +++LNL+          +  +  +++
Sbjct: 47  DITLNNQKIVTFKNSTMRKLPAAL----LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 102

Query: 104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN 163
            L + +N +   +      N   L  L LE + L  SL + I    P L  LSMS   + 
Sbjct: 103 KLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE 160

Query: 164 GVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
            +     F    SL++  +   R+        +    +PSL +  +SY
Sbjct: 161 RIEDDT-FQATTSLQNLQLSSNRLT------HVDLSLIPSLFHANVSY 201

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.6 bits (100), Expect = 5e-05
 Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 15/127 (11%)

Query: 38  YLNASLFTPFQQLESLDLTQNKIAGCVENEGIER-LSRLNNLKMLNLSGNSFNNSILSSL 96
            +    F   Q+LE L ++ N++        +      +  LK+L+LS N     +  + 
Sbjct: 268 KIMYHPFVKMQRLERLYISNNRL------VALNLYGQPIPTLKVLDLSHNHL-LHVERNQ 320

Query: 97  THLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLS 156
                L +L L  N +  ++    L     L+ LTL  +    +   S+ ++F ++   +
Sbjct: 321 PQFDRLENLYLDHNSIV-TLK---LSTHHTLKNLTLSHNDWDCN---SLRALFRNVARPA 373

Query: 157 MSFCEVN 163
           +   + +
Sbjct: 374 VDDADQH 380

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.7 bits (116), Expect = 4e-07
 Identities = 41/224 (18%), Positives = 86/224 (38%), Gaps = 35/224 (15%)

Query: 4   ATDCCQWERVEC------SNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQ 57
           A+D   W+ ++        + TGR+++  +              +      +++ +DL+ 
Sbjct: 43  ASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSN 102

Query: 58  NKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSID 117
           + I     +     LS+ + L+ L+L G   ++ I+++L   S+L  LNL          
Sbjct: 103 SVI---EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL---------- 149

Query: 118 VKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCE--VNGVVRGQGFPHFK 175
                  +     +  +       LQ++ S    L  L++S+C       V+       +
Sbjct: 150 -------SGCSGFSEFA-------LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE 195

Query: 176 SLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSS 219
           ++   ++   R  L  S L  +    P+L +L LS S +  N  
Sbjct: 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC 239

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.6 bits (100), Expect = 4e-05
 Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 48  QQLESLDLTQNKIAGCVENEGIERLSR-LNNLKMLNLSGNSF-NNSILSSLTHLSSLRSL 105
           + +  L+L  +     ++   +  L R   NL  L+LS +    N        L+ L+ L
Sbjct: 195 ETITQLNL--SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 252

Query: 106 NLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLK 153
           +L          + EL     L+ L +    +    LQ +    P L+
Sbjct: 253 SLSRCYDIIPETLLELGEIPTLKTLQV-FGIVPDGTLQLLKEALPHLQ 299

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 36/209 (17%), Positives = 74/209 (35%), Gaps = 46/209 (22%)

Query: 42  SLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSF--NNSILSSLTHL 99
            + +   +L++L L   +++    +  +  L++ +NL  LNLSG S     ++ + L+  
Sbjct: 112 GILSQCSKLQNLSLEGLRLS----DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 167

Query: 100 SSLRSLNLLWNRLEGSIDVKEL--HNFTNLEYLTLESSSLHIS----------------- 140
           S L  LNL W        V+    H    +  L L     ++                  
Sbjct: 168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227

Query: 141 -----------LLQSIASIFPSLKNLSMSFCEV---NGVVRGQGFPHFKSLEHFDMRFAR 186
                        Q        L++LS+S C       ++         +L+   +    
Sbjct: 228 DLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLE---LGEIPTLKTLQVFG-- 281

Query: 187 IALNTSFLQIIGESMPSLKYLLLSYSTLG 215
             +    LQ++ E++P L+     ++T+ 
Sbjct: 282 -IVPDGTLQLLKEALPHLQINCSHFTTIA 309

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 15/121 (12%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSL 96
           L  S+F+ F  LE L L QN+I        I+      L +L  LNLS N   +      
Sbjct: 290 LLKSVFSHFTDLEQLTLAQNEI------NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343

Query: 97  THLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSI-ASIFPSLKNL 155
            +L  L  L+L +N +  ++  +      NL+ L     +L  + L+S+   IF  L +L
Sbjct: 344 ENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKEL-----ALDTNQLKSVPDGIFDRLTSL 397

Query: 156 S 156
            
Sbjct: 398 Q 398

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 11/120 (9%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98
           LN + F+  Q L+ L + Q      + N     LS   +L +L L  N F      +   
Sbjct: 45  LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS---SLIILKLDYNQFLQLETGAFNG 101

Query: 99  LSSLRSLNLLWNRLEGS-IDVKELHNFTNLEYLTLESSSLHISLLQSI--ASIFPSLKNL 155
           L++L  L L    L+G+ +        T+LE L      L  + ++ I  AS F +++  
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEML-----VLRDNNIKKIQPASFFLNMRRF 156

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 10/138 (7%)

Query: 77  NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSS 136
           ++  ++LS NS      +S + L  L+ L +        I        ++L  L L+ + 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 137 LHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQG-FPHFKSLEHFDM---RFARIALNTS 192
               L     +   +L+ L+++ C ++G V     F    SLE   +      +I   + 
Sbjct: 91  FL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 193 FLQIIGESMPSLKYLLLS 210
           F      +M     L L+
Sbjct: 150 F-----LNMRRFHVLDLT 162

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 8/123 (6%)

Query: 41  ASLFTPFQQLESLDLTQNKIAGCVENEGIERLS-------RLNNLKMLNLSGNSFNNSIL 93
           AS F   ++   LDLT NK+   +  E +           RL+++ + +++         
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 94  SSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLK 153
            +    +S+ +L+L  N  + S+  +        +  +L  S+ +        + F    
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 154 NLS 156
           N +
Sbjct: 266 NFT 268

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 38/174 (21%), Positives = 64/174 (36%), Gaps = 17/174 (9%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98
           L    F   Q L +L L  NKI+  +  +     S L  L+ L +S N     I  +L  
Sbjct: 69  LRKDDFKGLQHLYALVLVNNKISK-IHEKA---FSPLRKLQKLYISKNHL-VEIPPNL-- 121

Query: 99  LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMS 158
            SSL  L +  NR+   +         N+  + +  + L  S  +  A     L  L +S
Sbjct: 122 PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS 180

Query: 159 FCEVNGVVRGQGFPHFKSLEHFDMRFARI-ALNTSFLQIIGESMPSLKYLLLSY 211
             ++ G+ +       ++L    +   +I A+    L         L  L L +
Sbjct: 181 EAKLTGIPKD----LPETLNELHLDHNKIQAIELEDLL----RYSKLYRLGLGH 226

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 24/135 (17%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGI---ERLSRLN---------------NLKM 80
           +   +F+  + +  +++  N +       G     +L+ L                 L  
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNE 197

Query: 81  LNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHIS 140
           L+L  N      L  L   S L  L L  N++   I+   L     L  L L+++     
Sbjct: 198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNK---- 252

Query: 141 LLQSIASIFPSLKNL 155
            L  + +  P LK L
Sbjct: 253 -LSRVPAGLPDLKLL 266

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 8/135 (5%)

Query: 77  NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSS 136
           +  +L+L  N  +         L  L +L L+ N++   I  K       L+ L +  S 
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYI--SK 111

Query: 137 LHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQI 196
            H+  +    ++  SL  L +    +  V +G  F   +++   +M    +    S  + 
Sbjct: 112 NHLVEIP--PNLPSSLVELRIHDNRIRKVPKGV-FSGLRNMNCIEMGGNPL--ENSGFEP 166

Query: 197 IGESMPSLKYLLLSY 211
                  L YL +S 
Sbjct: 167 GAFDGLKLNYLRISE 181

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.0 bits (115), Expect = 7e-07
 Identities = 29/154 (18%), Positives = 52/154 (33%), Gaps = 22/154 (14%)

Query: 25  LDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRL-----NNLK 79
           L L           + +S       L+ L L+ N +     + G++ L          L+
Sbjct: 90  LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL----GDAGLQLLCEGLLDPQCRLE 145

Query: 80  MLNLSGNSFNN----SILSSLTHLSSLRSLNLLWNRLEGSIDVKEL-----HNFTNLEYL 130
            L L   S +      + S L      + L +  N +     V+ L      +   LE L
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI-NEAGVRVLCQGLKDSPCQLEAL 204

Query: 131 TLESSSLHISLLQSIASIF---PSLKNLSMSFCE 161
            LES  +     + +  I     SL+ L++   +
Sbjct: 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 15/119 (12%)

Query: 48  QQLESLDLTQNKIAGCVENEGIERLSR-LNNLKMLNLSGNSFNN----SILSSLTHLSSL 102
             ++SLD+   ++     +     L   L   +++ L            I S+L    +L
Sbjct: 3   LDIQSLDIQCEEL----SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL 58

Query: 103 RSLNLLWNRLEGSIDVKEL-----HNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLS 156
             LNL  N L G + V  +          ++ L+L++  L  +    ++S   +L  L 
Sbjct: 59  AELNLRSNEL-GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 116

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 22/126 (17%)

Query: 48  QQLESLDLTQNKIAGCVENEGIERLSRL-----NNLKMLNLSGNSFNN----SILSSLTH 98
           + L  L ++ N++    E+ G+  L +      + L++L L+    ++    S+ ++L  
Sbjct: 341 RFLLELQISNNRL----EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396

Query: 99  LSSLRSLNLLWNRLEGSIDVKEL-----HNFTNLEYLTLESSSLH---ISLLQSIASIFP 150
             SLR L+L  N L G   + +L          LE L L            LQ++    P
Sbjct: 397 NHSLRELDLSNNCL-GDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKP 455

Query: 151 SLKNLS 156
           SL+ +S
Sbjct: 456 SLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 33/151 (21%), Positives = 58/151 (38%), Gaps = 22/151 (14%)

Query: 25  LDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRL-----NNLK 79
           + L      E      +S       L  L+L  N++     + G+  + +        ++
Sbjct: 33  VRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL----GDVGVHCVLQGLQTPSCKIQ 88

Query: 80  MLNLSGNSFNN----SILSSLTHLSSLRSLNLLWNRLEGSIDVKEL-----HNFTNLEYL 130
            L+L            + S+L  L +L+ L+L  N L G   ++ L          LE L
Sbjct: 89  KLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL-GDAGLQLLCEGLLDPQCRLEKL 147

Query: 131 TLESSSLHISLLQSIASIF---PSLKNLSMS 158
            LE  SL  +  + +AS+    P  K L++S
Sbjct: 148 QLEYCSLSAASCEPLASVLRAKPDFKELTVS 178

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 32/151 (21%), Positives = 49/151 (32%), Gaps = 22/151 (14%)

Query: 25  LDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRL-----NNLK 79
           L +               +    + L+ L L  N++     +EG   L          L+
Sbjct: 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL----GDEGARLLCETLLEPGCQLE 316

Query: 80  MLNLSGNSFNN----SILSSLTHLSSLRSLNLLWNRLEGSIDVKEL-----HNFTNLEYL 130
            L +   SF         S L     L  L +  NRL     V+EL        + L  L
Sbjct: 317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL-EDAGVRELCQGLGQPGSVLRVL 375

Query: 131 TLESSSLHISLLQSIASIF---PSLKNLSMS 158
            L    +  S   S+A+      SL+ L +S
Sbjct: 376 WLADCDVSDSSCSSLAATLLANHSLRELDLS 406

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 22/136 (16%)

Query: 41  ASLFTPFQQLESLDLTQNKIAGCVENEGIER-----LSRLNNLKMLNLSGNSFNN----S 91
           A  F   + L ++ + QN I      EGIE      L+    LK+L+L  N+F +    +
Sbjct: 180 AKTFQSHRLLHTVKMVQNGI----RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235

Query: 92  ILSSLTHLSSLRSLNLLWNRL--EGSIDVKE---LHNFTNLEYLTLESSSLH----ISLL 142
           +  +L    +LR L L    L   G+  V +         L+ L L+ + +      +L 
Sbjct: 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295

Query: 143 QSIASIFPSLKNLSMS 158
             I    P L  L ++
Sbjct: 296 TVIDEKMPDLLFLELN 311

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 33/203 (16%), Positives = 61/203 (30%), Gaps = 40/203 (19%)

Query: 48  QQLESLDLTQNKI--AGCVENEGI-ERLSRLNNLKMLNLSGNSFNN----------SILS 94
             ++ + L+ N I          + E ++   +L++   S                 +L 
Sbjct: 32  DSVKEIVLSGNTIGTEAA---RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88

Query: 95  SLTHLSSLRSLNLLWNRLEGSIDVKE----LHNFTNLEYLTLE------------SSSLH 138
           +L     L ++ L  N   G    +     L   T LE+L L             + +L 
Sbjct: 89  ALLKCPKLHTVRLSDNAF-GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 147

Query: 139 ISLLQSIASIFPSLKNLSMSFC--EVNGVVR-GQGFPHFKSLEHFDMRFARIALNTSFLQ 195
              +   A   P L+++       E   +    + F   + L    M    I        
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR-PEGIEH 206

Query: 196 IIGE---SMPSLKYLLLSYSTLG 215
           ++ E       LK L L  +T  
Sbjct: 207 LLLEGLAYCQELKVLDLQDNTFT 229

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 36/201 (17%), Positives = 68/201 (33%), Gaps = 36/201 (17%)

Query: 48  QQLESLDLTQNKIAGCVENEGI-------ERLSRLNNLKMLNLSGNSFNN----SILSSL 96
           + LE  + +     G V++E         + L +   L  + LS N+F       ++  L
Sbjct: 60  KDLEIAEFSDIFT-GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFL 118

Query: 97  THLSSLRSLNLLWNR------------LEGSIDVKELHNFTNLEYLTLESSSLHISLLQS 144
           +  + L  L L  N             L+     K+  N   L  +    + L    ++ 
Sbjct: 119 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178

Query: 145 IASIF---PSLKNLSMSFCEVN--GVVR--GQGFPHFKSLEHFDMRFARIALNTSFLQII 197
            A  F     L  + M    +   G+     +G  + + L+  D++        S    +
Sbjct: 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS--SAL 236

Query: 198 GE---SMPSLKYLLLSYSTLG 215
                S P+L+ L L+   L 
Sbjct: 237 AIALKSWPNLRELGLNDCLLS 257

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 34/165 (20%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
              + +L +  N +            +    L+ L +SGN    S+      L  L   +
Sbjct: 60  PAHITTLVIPDNNLT--------SLPALPPELRTLEVSGNQL-TSLPVLPPGLLELSIFS 110

Query: 107 LLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVV 166
                L            + L  L +  + L      S+  + P L+ LS+S  ++  + 
Sbjct: 111 NPLTHLPALP--------SGLCKLWIFGNQLT-----SLPVLPPGLQELSVSDNQLASL- 156

Query: 167 RGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
                     L  ++ +          L  +      L+ L +S 
Sbjct: 157 -PALPSELCKLWAYNNQ----------LTSLPMLPSGLQELSVSD 190

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 32/190 (16%), Positives = 64/190 (33%), Gaps = 22/190 (11%)

Query: 41  ASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 100
             LF    Q+  LDL    +      +    + +  NL++L       +  +     +  
Sbjct: 286 PILFPFAAQIRKLDLLYALL---ETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCK 342

Query: 101 SLRSLNLLWNRLEGSIDVKEL-----------HNFTNLEYLTLESSSLHISLLQSIASIF 149
            L+ L +     E  ++ +E                 LEY+ +  S +    L+SI +  
Sbjct: 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL 402

Query: 150 PSLKNLSMSFCEVNGVVRGQGFP--------HFKSLEHFDMRFARIALNTSFLQIIGESM 201
            +L +  +   +    +                K L  F     +  L    L  IG+  
Sbjct: 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS 462

Query: 202 PSLKYLLLSY 211
           P+++++LL Y
Sbjct: 463 PNVRWMLLGY 472

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 21/183 (11%), Positives = 52/183 (28%), Gaps = 12/183 (6%)

Query: 41  ASLFTPFQQLESLDLTQNKIAGCVENEGIERL-SRLNNLKMLNLSGNSF--NNSILSSLT 97
             L      LE L+    + A  +  + +E +     +L  + +             +  
Sbjct: 185 HELAQHNTSLEVLNFYMTEFAK-ISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA 243

Query: 98  HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLES-SSLHISLLQSIASIFPSLKNLS 156
           +L      +L     E     ++  N      L     S +  + +  +      ++ L 
Sbjct: 244 NLEEFCGGSLN----EDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLD 299

Query: 157 MSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGT 216
           + +  +             +LE  + R     +    L+++ +    LK L +       
Sbjct: 300 LLYALLETEDHCTLIQKCPNLEVLETRN---VIGDRGLEVLAQYCKQLKRLRIERGADEQ 356

Query: 217 NSS 219
              
Sbjct: 357 GME 359

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 28/196 (14%), Positives = 62/196 (31%), Gaps = 21/196 (10%)

Query: 49  QLESLDL-------TQNKIAGCVENEGIERLSR-LNNLKMLNLSGNSFNN----SILSSL 96
           QL+ L +             G V   G+  L++    L+ + +  +   N    SI + L
Sbjct: 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL 402

Query: 97  THLSSLRSLNLLWNRLEGSIDVKE-----LHNFTNLEYLTLESSSLHISL--LQSIASIF 149
            +L   R + L        + +       L     L           ++   L  I    
Sbjct: 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS 462

Query: 150 PSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLL 209
           P+++ + + +   +     +      +L+  +MR      +   +      +PSL+YL +
Sbjct: 463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF--SERAIAAAVTKLPSLRYLWV 520

Query: 210 SYSTLGTNSSRILHQG 225
                      ++   
Sbjct: 521 QGYRASMTGQDLMQMA 536

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.2 bits (99), Expect = 7e-05
 Identities = 33/230 (14%), Positives = 66/230 (28%), Gaps = 50/230 (21%)

Query: 7   CCQWERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQ--------- 57
           C +W +++          + ++  Y+          L   F  L SL L           
Sbjct: 41  CRRWFKIDSETRE----HVTMALCYTA-----TPDRLSRRFPNLRSLKLKGKPRAAMFNL 91

Query: 58  -NKIAGCVENEGIERLSR-LNNLKMLNLSGNSFNNSILSSL--THLSSLRSLNLLWNRLE 113
             +  G      +  +S  L  LK ++      ++  L  L       L +L L      
Sbjct: 92  IPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF 151

Query: 114 GSIDVKEL-HNFTNLEYLTLESSSLH---ISLLQSIASIFPSLKNLSMSFCEVNGVVRGQ 169
            +  +  +  +   ++ L +E SS        L  +A    SL+ L+    E   +    
Sbjct: 152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI---- 207

Query: 170 GFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSS 219
                               +   L+ I  +  SL  + +    +     
Sbjct: 208 --------------------SPKDLETIARNCRSLVSVKVGDFEILELVG 237

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 37/167 (22%)

Query: 8   CQWERVECSN-----------TTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLT 56
           C+   V+CSN                + L+ +     E +      +F    QL  ++ +
Sbjct: 11  CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEAT-----GIFKKLPQLRKINFS 65

Query: 57  QNKIAGCVENEGIER--LSRLNNLKMLNLSGN---SFNNSILSSLTHLSSLRSLNLLWNR 111
            NKI        IE       + +  + L+ N   +  + +   L    SL++L L  NR
Sbjct: 66  NNKI------TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE---SLKTLMLRSNR 116

Query: 112 LEGSIDVKELHNFTNLEYLTLESSSLHISLLQSI-ASIFPSLKNLSM 157
           +   +        +++  L     SL+ + + ++    F +L +LS 
Sbjct: 117 IT-CVGNDSFIGLSSVRLL-----SLYDNQITTVAPGAFDTLHSLST 157

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 19/103 (18%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSL 96
           +    F     +  + LT N++      E ++      L +LK L L  N      ++ +
Sbjct: 72  IEEGAFEGASGVNEILLTSNRL------ENVQHKMFKGLESLKTLMLRSNR-----ITCV 120

Query: 97  -----THLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLES 134
                  LSS+R L+L  N++  ++         +L  L L +
Sbjct: 121 GNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLA 162

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 32/189 (16%), Positives = 65/189 (34%), Gaps = 20/189 (10%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSL 96
           L  S      +L  L ++ N+I      + ++         L+ L+LS N      L  +
Sbjct: 36  LWTSDILSLSKLRILIISHNRI------QYLDISVFKFNQELEYLDLSHNK-----LVKI 84

Query: 97  T--HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKN 154
           +     +L+ L+L +N  +     KE  N + L++L L ++ L     +S       L  
Sbjct: 85  SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE----KSSVLPIAHLNI 140

Query: 155 LSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTL 214
             +           +     +      +       N  F  I+  S+ ++  L LS    
Sbjct: 141 SKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP-TNKEFHFILDVSVKTVANLELSNIKC 199

Query: 215 GTNSSRILH 223
               ++  +
Sbjct: 200 VLEDNKCSY 208

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.2 bits (107), Expect = 6e-06
 Identities = 26/136 (19%), Positives = 57/136 (41%), Gaps = 6/136 (4%)

Query: 24  ALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNL 83
           AL +  + S  +  +  + ++  F  +   + T +              S+++    L+ 
Sbjct: 277 ALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRMVHMLC----PSKISPFLHLDF 331

Query: 84  SGNSFNNSILSSLTHLSSLRSLNLLWNRLEG-SIDVKELHNFTNLEYLTLESSSLHISLL 142
           S N   +++  +  HL+ L +L L  N+L+  S   +      +L+ L +  +S+     
Sbjct: 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391

Query: 143 QSIASIFPSLKNLSMS 158
           +   S   SL +L+MS
Sbjct: 392 KGDCSWTKSLLSLNMS 407

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 5/111 (4%)

Query: 77  NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSS 136
              +LN+S N  +    S +  LS LR L +  NR++  +D+        LEYL L  + 
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNK 80

Query: 137 LHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARI 187
           L             +LK+L +SF   + +   + F +   L+   +    +
Sbjct: 81  LVKISCHP----TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 25/115 (21%)

Query: 41  ASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT--- 97
           A + T  + L+ LD++QN ++    +E     S   +L  LN+S N   ++I   L    
Sbjct: 367 AEMTTQMKSLQQLDISQNSVS---YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRI 423

Query: 98  ------------------HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLES 134
                              L +L+ LN+  N+L+ S+        T+L+ + L +
Sbjct: 424 KVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 16/124 (12%)

Query: 38  YLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLS--RLNNLKMLNLSGNSFNN-SILS 94
           YL+ S+F   Q+LE LDL+ NK+           +S     NLK L+LS N+F+   I  
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVK---------ISCHPTVNLKHLDLSFNAFDALPICK 109

Query: 95  SLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKN 154
              ++S L+ L L    LE S     +    +L    +          +           
Sbjct: 110 EFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT 165

Query: 155 LSMS 158
            S+ 
Sbjct: 166 ESLH 169

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.2 bits (107), Expect = 5e-06
 Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 19/123 (15%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIER--LSRLNNLKMLNLSGN---SFNNSILSSLTH 98
            T    L SL L+ N +        I       + NL+ L+LS N   + +  + S L  
Sbjct: 60  PTRLTNLHSLLLSHNHL------NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ- 112

Query: 99  LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLES---SSLHISLLQSIASIFPSLKNL 155
             +L  L L  N +   +D     +   L+ L L     S   + L++    + P L  L
Sbjct: 113 --ALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKL-PKLMLL 168

Query: 156 SMS 158
            +S
Sbjct: 169 DLS 171

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 12/99 (12%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIER--LSRLNNLKMLNLSGN---SFNNSIL 93
           L+  LF+  Q LE L L  N I        ++R     +  L+ L LS N    F   ++
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHI------VVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 94  SSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTL 132
                L  L  L+L  N+L+  + + +L          L
Sbjct: 157 KDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 22/129 (17%)

Query: 38  YLNASLFTPFQQLESLDLTQNKIAGCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSS 95
           ++++  F P   L  LDL+ N +        ++    S L  L++L L  N      +  
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHL------HTLDEFLFSDLQALEVLLLYNNH-----IVV 126

Query: 96  L-----THLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSI-ASIF 149
           +       ++ L+ L L  N++     V+ + +   L    L    L  + L+ +  +  
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLP--KLMLLDLSSNKLKKLPLTDL 183

Query: 150 PSLKNLSMS 158
             L     +
Sbjct: 184 QKLPAWVKN 192

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 37  WYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL 96
             ++ + F    QL+ L L+QN+I+     E I+  ++L  L +L+LS N      L+ L
Sbjct: 125 VVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL 183

Query: 97  THLSSLRSLNL 107
             L +     L
Sbjct: 184 QKLPAWVKNGL 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 9e-06
 Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 29/127 (22%)

Query: 39  LNASLFTPFQQLESLDLTQNKI----AGCVENEGIERLSRLNNLKMLNLSGNSFNNSILS 94
           L +  F    +L  L L  NK+    AG            L NL+ L ++ N      L 
Sbjct: 52  LPSKAFHRLTKLRLLYLNDNKLQTLPAGI--------FKELKNLETLWVTDNK-----LQ 98

Query: 95  SL-----THLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSI-ASI 148
           +L       L +L  L L  N+L+ S+  +   + T L YL     SL  + LQS+   +
Sbjct: 99  ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYL-----SLGYNELQSLPKGV 152

Query: 149 FPSLKNL 155
           F  L +L
Sbjct: 153 FDKLTSL 159

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 31/164 (18%), Positives = 64/164 (39%), Gaps = 28/164 (17%)

Query: 48  QQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNL 107
             LE L ++ N++      E +  L   + LK++++  NS     L  L    SL  +  
Sbjct: 131 PLLEYLGVSNNQL------EKLPELQNSSFLKIIDVDNNSL--KKLPDL--PPSLEFIAA 180

Query: 108 LWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVR 167
             N+LE   ++ EL N   L  +  +++SL       +  +  SL+++      +  +  
Sbjct: 181 GNNQLE---ELPELQNLPFLTAIYADNNSLK-----KLPDLPLSLESIVAGNNILEELP- 231

Query: 168 GQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
                +   L            + + L+ + +  PSL+ L +  
Sbjct: 232 --ELQNLPFLTTIY-------ADNNLLKTLPDLPPSLEALNVRD 266

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 38/181 (20%), Positives = 68/181 (37%), Gaps = 32/181 (17%)

Query: 42  SLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL-THLS 100
            L      LE +    N++      E +  L  L  L  +    NS     L  L     
Sbjct: 167 KLPDLPPSLEFIAAGNNQL------EELPELQNLPFLTAIYADNNS-----LKKLPDLPL 215

Query: 101 SLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFC 160
           SL S+    N LE   ++ EL N   L  +  +++      L+++  + PSL+ L++   
Sbjct: 216 SLESIVAGNNILE---ELPELQNLPFLTTIYADNNL-----LKTLPDLPPSLEALNVRDN 267

Query: 161 EVNGVVRGQGFPHFKSLEHFDMRFARI--------ALNTSFLQI--IGESMPSLKYLLLS 210
            +  +           L+  +  F+ +         LN S  +I  + +  PSL+ L +S
Sbjct: 268 YLTDLPE--LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVS 325

Query: 211 Y 211
            
Sbjct: 326 N 326

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 32/170 (18%), Positives = 61/170 (35%), Gaps = 32/170 (18%)

Query: 42  SLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 101
            L      LES+    N +      E +  L  L  L  +       NN + +      S
Sbjct: 209 KLPDLPLSLESIVAGNNIL------EELPELQNLPFLTTIYAD----NNLLKTLPDLPPS 258

Query: 102 LRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCE 161
           L +LN+  N L    ++       +L +L +  +         ++ + P+L  L+ S  E
Sbjct: 259 LEALNVRDNYLTDLPEL-----PQSLTFLDVSENI-----FSGLSELPPNLYYLNASSNE 308

Query: 162 VNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
           +  +          SLE  +       ++ + L  +    P L+ L+ S+
Sbjct: 309 IRSL-----CDLPPSLEELN-------VSNNKLIELPALPPRLERLIASF 346

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 37/188 (19%), Positives = 70/188 (37%), Gaps = 30/188 (15%)

Query: 25  LDLSYIYSGEYSW-YLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRL-----NNL 78
           LDL +      S      +       + SL+L  N +      +  + L ++      N+
Sbjct: 114 LDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL----GIKSSDELIQILAAIPANV 169

Query: 79  KMLNLSGNSFNNS----ILSSLTHL-SSLRSLNLLWNRLEGSIDVKEL-----HNFTNLE 128
             LNL GN+  +     +   L  + +S+ SL+L  N L G     EL         ++ 
Sbjct: 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL-GLKSYAELAYIFSSIPNHVV 228

Query: 129 YLTLESSSLHISLLQSIASIF---PSLKNLSMSFCEVNGVVR------GQGFPHFKSLEH 179
            L L  + LH   L+++  +      L+ + + +  V  + +      G  FP+ + +  
Sbjct: 229 SLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL 288

Query: 180 FDMRFARI 187
            D     I
Sbjct: 289 VDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 18/141 (12%), Positives = 44/141 (31%), Gaps = 23/141 (16%)

Query: 38  YLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRL----NNLKMLNLSGNSFNN--- 90
            L     +    + SL+L  N +        +E L  L     +L+ + L  +   N   
Sbjct: 215 ELAYIFSSIPNHVVSLNLCLNCL----HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSK 270

Query: 91  ----SILSSLTHLSSLRSLNLLWNRL--EGSIDVKEL--HNFTNLEYLTLESSSL----H 138
               ++ ++  ++  +  ++     +    SI +  L        +  +L +  L     
Sbjct: 271 EQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQK 330

Query: 139 ISLLQSIASIFPSLKNLSMSF 159
                   +I   L+    + 
Sbjct: 331 HQTNIEDLNIPDELRESIQTC 351

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 20/119 (16%), Positives = 44/119 (36%), Gaps = 12/119 (10%)

Query: 20  GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLK 79
             V                   +      +++++D T + I     + G + +  L  ++
Sbjct: 36  AMVRYHGQQRWQKDYNHLP---TGPLDKYKIQAIDATDSCI----MSIGFDHMEGLQYVE 88

Query: 80  MLNLSGNSF--NNSI--LSSLTHLS-SLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLE 133
            + L    +  +  +  LS L +L  S+  + ++         +  LH+F NL+YL L 
Sbjct: 89  KIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLS 147

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 25/126 (19%)

Query: 39  LNASLFTPFQQLESLDLTQNKI----AGCVENEGIERLSRLNNLKMLNLSGN---SFNNS 91
           +    F+P+++L  +DL+ N+I                  L +L  L L GN       S
Sbjct: 47  IPPGAFSPYKKLRRIDLSNNQISELAPDA--------FQGLRSLNSLVLYGNKITELPKS 98

Query: 92  ILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIA-SIFP 150
           +   L    SL+ L L  N++   + V    +  NL  L     SL+ + LQ+IA   F 
Sbjct: 99  LFEGLF---SLQLLLLNANKIN-CLRVDAFQDLHNLNLL-----SLYDNKLQTIAKGTFS 149

Query: 151 SLKNLS 156
            L+ + 
Sbjct: 150 PLRAIQ 155

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.4 bits (101), Expect = 3e-05
 Identities = 18/122 (14%), Positives = 41/122 (33%), Gaps = 13/122 (10%)

Query: 47  FQQLESLDL---TQNKI--AGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH--- 98
              LE L L    ++            +    R  NLK L +      N ++        
Sbjct: 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI 277

Query: 99  LSSLRSLNLLWNRLEGSIDVKEL----HNFTNLEYLTLESSSLHISLLQSIASIFPSLKN 154
           L  L ++++    L      + L        +L+++ ++ + L   + + +    P   +
Sbjct: 278 LPQLETMDISAGVL-TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKID 336

Query: 155 LS 156
           +S
Sbjct: 337 VS 338

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 9/114 (7%)

Query: 48  QQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNL 107
           Q L+SL +  + ++          +  L  L+ L+L G +   +        + L+ L L
Sbjct: 206 QNLKSLKIRNSPLSALGPA-----IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260

Query: 108 LW-NRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFC 160
              + L  ++   ++H  T LE L L        L   IA + P+   + +   
Sbjct: 261 KDCSNLL-TLP-LDIHRLTQLEKLDLRGCVNLSRLPSLIAQL-PANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 29/175 (16%)

Query: 48  QQLESLDLTQNKIAGCVENEGI-ERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
             L+ + +    +        + + + +   L+ L L+ N    ++ +S+  L+ LR L+
Sbjct: 104 SHLQHMTIDAAGL------MELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELS 156

Query: 107 LLW-NRLE-------GSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMS 158
           +     L         +    E     NL+ L LE + +  SL  SIA++  +LK+L + 
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANL-QNLKSLKIR 214

Query: 159 FCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGES---MPSLKYLLLS 210
              ++ +  G    H   LE  D+R        + L+           LK L+L 
Sbjct: 215 NSPLSAL--GPAIHHLPKLEELDLR------GCTALRNYPPIFGGRAPLKRLILK 261

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 20/124 (16%)

Query: 47  FQQLESLDLTQNKIAGCVENEGI-ERLSRLNNLKMLNLSGNS---------FNNSILSSL 96
           F  LE+L L +N +        +   ++ LN L+ L++              +       
Sbjct: 126 FAGLETLTLARNPL------RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179

Query: 97  THLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLS 156
             L +L+SL L W  +  S+    + N  NL+ L + +S L  +L  +I  + P L+ L 
Sbjct: 180 QGLVNLQSLRLEWTGIR-SLP-ASIANLQNLKSLKIRNSPLS-ALGPAIHHL-PKLEELD 235

Query: 157 MSFC 160
           +  C
Sbjct: 236 LRGC 239

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 11/101 (10%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL-- 96
           L     +   +L  L L+ N+I     +  +       +L+ L++S N      L ++  
Sbjct: 67  LRMPDISFLSELRVLRLSHNRIRSL--DFHV--FLFNQDLEYLDVSHNR-----LQNISC 117

Query: 97  THLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSL 137
             ++SLR L+L +N  +     KE  N T L +L L ++  
Sbjct: 118 CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 33/173 (19%), Positives = 56/173 (32%), Gaps = 26/173 (15%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98
            +         L SLD   + I        +  + +L  L  L  + N+     LS  T 
Sbjct: 33  TDTISEEQLATLTSLDCHNSSI------TDMTGIEKLTGLTKLICTSNNITTLDLSQNT- 85

Query: 99  LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMS 158
             +L  L    N+L  ++D   +   T L YL  +++ L     +   S  P L  L+ +
Sbjct: 86  --NLTYLACDSNKLT-NLD---VTPLTKLTYLNCDTNKLT----KLDVSQNPLLTYLNCA 135

Query: 159 FCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
              +  +       H   L   D        N    ++       L  L  S+
Sbjct: 136 RNTLTEID----VSHNTQLTELDCHL-----NKKITKLDVTPQTQLTTLDCSF 179

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 35/169 (20%), Positives = 52/169 (30%), Gaps = 29/169 (17%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103
                 L  L  T N I        ++ LS+  NL  L    N   N  ++ LT    L 
Sbjct: 60  IEKLTGLTKLICTSNNI------TTLD-LSQNTNLTYLACDSNKLTNLDVTPLT---KLT 109

Query: 104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSL-HISLLQSIASIFPSLKNLSMSFCEV 162
            LN   N+L   +DV +      L YL    ++L  I +             L+   C +
Sbjct: 110 YLNCDTNKLT-KLDVSQN---PLLTYLNCARNTLTEIDVSH--------NTQLTELDCHL 157

Query: 163 NGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211
           N  +          L   D  F +I       ++       L  L    
Sbjct: 158 NKKITKLDVTPQTQLTTLDCSFNKIT------ELDVSQNKLLNRLNCDT 200

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 20/173 (11%), Positives = 61/173 (35%), Gaps = 41/173 (23%)

Query: 6   DCCQWERVECSNTTGRVI--------ALDLSY--IYSGEYSWYLNASLFTPFQQLESLDL 55
           +C Q E    +    + I         L L    + +      + +  F+    +  + +
Sbjct: 9   ECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRT------IPSHAFSNLPNISRIYV 62

Query: 56  TQNKIAGCVENEGIERLSR-----LNNLKMLNLSGNSFNNSILSSL-----THLSSLRSL 105
           + +          +++L       L+ +  + +     N   L+ +       L  L+ L
Sbjct: 63  SID--------VTLQQLESHSFYNLSKVTHIEIR----NTRNLTYIDPDALKELPLLKFL 110

Query: 106 NLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMS 158
            +    L+   D+ ++++      L + + + +++ +    + F  L N +++
Sbjct: 111 GIFNTGLKMFPDLTKVYSTDIFFILEI-TDNPYMTSIP--VNAFQGLCNETLT 160

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 22/112 (19%)

Query: 51  ESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT-----HLSSLRSL 105
             L L  N+          + LS   +L +++LS N      +S+L+     +++ L +L
Sbjct: 34  TELYLDGNQF-----TLVPKELSNYKHLTLIDLSNNR-----ISTLSNQSFSNMTQLLTL 83

Query: 106 NLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSI-ASIFPSLKNLS 156
            L +NRL   I  +      +L  L     SLH + +  +    F  L  LS
Sbjct: 84  ILSYNRLR-CIPPRTFDGLKSLRLL-----SLHGNDISVVPEGAFNDLSALS 129

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 15/100 (15%), Positives = 42/100 (42%), Gaps = 11/100 (11%)

Query: 39  LNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILS---- 94
           +    F+ F  LE ++++QN +   +E +    L +L+ +++         N++L     
Sbjct: 45  IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK------ANNLLYINPE 98

Query: 95  SLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLES 134
           +  +L +L+ L +    ++  +      +      L ++ 
Sbjct: 99  AFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQD 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.91
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.9
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.86
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.86
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.86
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.85
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.85
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.85
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.84
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.84
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.84
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.84
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.84
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.84
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.84
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.84
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.83
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.83
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.83
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.82
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.82
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.81
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.81
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.81
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.81
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.81
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.8
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.8
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.8
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.8
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.79
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.79
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.79
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.79
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.78
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.78
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.78
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.78
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.77
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.77
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.77
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.77
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.77
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.77
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.76
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.71
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.7
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.7
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.67
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.67
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.6
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.59
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.59
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.57
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.57
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.55
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.54
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.53
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.53
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.53
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.48
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.47
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.47
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.45
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.39
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.39
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.36
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.33
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.33
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.3
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.26
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.13
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.1
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.06
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.0
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.0
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.98
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.96
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.93
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.65
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.6
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.45
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.38
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.35
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.3
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.77
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.6
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.53
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.51
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.45
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.37
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.15
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.43

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=3.8e-28  Score=192.00  Aligned_cols=208  Identities=22%  Similarity=0.326  Sum_probs=144.2

Q ss_pred             CCcccC--CCceeecCCc--CceEEeeccccccccchhHHhhhhhcCCCCccEEEccC-CcccCcchhhHHHHHhcCCCC
Q 045865            4 ATDCCQ--WERVECSNTT--GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQ-NKIAGCVENEGIERLSRLNNL   78 (225)
Q Consensus         4 ~~~~c~--~~~~~~~~~~--~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~~~~l~~L   78 (225)
                      ++|||.  |.|+.|....  ++|+.|+++++.+...  ...+..+.++++|++|++++ |.+.+..|.    .+..+++|
T Consensus        30 ~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~--~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~----~l~~l~~L  103 (313)
T 1ogq_A           30 TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP--YPIPSSLANLPYLNFLYIGGINNLVGPIPP----AIAKLTQL  103 (313)
T ss_dssp             TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSC--EECCGGGGGCTTCSEEEEEEETTEESCCCG----GGGGCTTC
T ss_pred             CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCC--cccChhHhCCCCCCeeeCCCCCcccccCCh----hHhcCCCC
Confidence            568999  9999998544  7999999999998730  03455778888888888884 777766676    57788888


Q ss_pred             CEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCC-CCCEEec
Q 045865           79 KMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFP-SLKNLSM  157 (225)
Q Consensus        79 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~-~L~~L~l  157 (225)
                      ++|++++|.+.+..|..+..+++|++|++++|.+.+..|. .+..+++|++|++++|.+.+..|..+.. ++ +|+.|++
T Consensus       104 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~~L~~L~L  181 (313)
T 1ogq_A          104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRISGAIPDSYGS-FSKLFTSMTI  181 (313)
T ss_dssp             SEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSSCCEEECCGGGGC-CCTTCCEEEC
T ss_pred             CEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh-HHhcCCCCCeEECcCCcccCcCCHHHhh-hhhcCcEEEC
Confidence            8888888888766777777788888888888877655555 6777777777777777776555555555 55 6666666


Q ss_pred             ccccccccccc----------------------CCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCC
Q 045865          158 SFCEVNGVVRG----------------------QGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLG  215 (225)
Q Consensus       158 ~~n~~~~~~~~----------------------~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~  215 (225)
                      ++|.+++..+.                      ..+..+++|+.|++++|++  .+..+. +.. +++|+.|++++|.++
T Consensus       182 ~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~-~~~-l~~L~~L~Ls~N~l~  257 (313)
T 1ogq_A          182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL--AFDLGK-VGL-SKNLNGLDLRNNRIY  257 (313)
T ss_dssp             CSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE--CCBGGG-CCC-CTTCCEEECCSSCCE
T ss_pred             cCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce--eeecCc-ccc-cCCCCEEECcCCccc
Confidence            66665543333                      1455556666666666633  222222 445 667777777777777


Q ss_pred             Cccchhhc
Q 045865          216 TNSSRILH  223 (225)
Q Consensus       216 ~~~~~~~~  223 (225)
                      +.+|..+.
T Consensus       258 ~~~p~~l~  265 (313)
T 1ogq_A          258 GTLPQGLT  265 (313)
T ss_dssp             ECCCGGGG
T ss_pred             CcCChHHh
Confidence            66666553

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=1.9e-25  Score=177.55  Aligned_cols=205  Identities=17%  Similarity=0.171  Sum_probs=146.6

Q ss_pred             CCCCcccCCCceeecC--------CcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHh
Q 045865            2 EGATDCCQWERVECSN--------TTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLS   73 (225)
Q Consensus         2 ~~~~~~c~~~~~~~~~--------~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~   73 (225)
                      ....++|.|.|+.|..        ...+++.|+++++.+.    .++. .+.++++|++|++++|.+. .+|.    .+.
T Consensus        55 ~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~----~lp~-~l~~l~~L~~L~L~~n~l~-~lp~----~~~  124 (328)
T 4fcg_A           55 SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP----QFPD-QAFRLSHLQHMTIDAAGLM-ELPD----TMQ  124 (328)
T ss_dssp             TTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS----SCCS-CGGGGTTCSEEEEESSCCC-CCCS----CGG
T ss_pred             cccccccccCCcchhhhHHHHhcccccceeEEEccCCCch----hcCh-hhhhCCCCCEEECCCCCcc-chhH----HHh
Confidence            3567899999999853        3468888888888876    4444 3455777777777777776 3554    466


Q ss_pred             cCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCC--------------------------------ccchhhh
Q 045865           74 RLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEG--------------------------------SIDVKEL  121 (225)
Q Consensus        74 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~--------------------------------~~~~~~~  121 (225)
                      .+++|++|++++|.+. .+|..+..+++|++|++++|.+.+                                .+|. .+
T Consensus       125 ~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~l  202 (328)
T 4fcg_A          125 QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA-SI  202 (328)
T ss_dssp             GGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG-GG
T ss_pred             ccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchH-hh
Confidence            6777777777777666 345556666666666665544332                                3333 45


Q ss_pred             ccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcC
Q 045865          122 HNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESM  201 (225)
Q Consensus       122 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~  201 (225)
                      ..+++|+.|++++|.+.+ ++..+.. +++|+.|++++|.+.+..+. .+..+++|+.|++++|  ...+.+|..+.. +
T Consensus       203 ~~l~~L~~L~L~~N~l~~-l~~~l~~-l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n--~~~~~~p~~~~~-l  276 (328)
T 4fcg_A          203 ANLQNLKSLKIRNSPLSA-LGPAIHH-LPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDC--SNLLTLPLDIHR-L  276 (328)
T ss_dssp             GGCTTCCEEEEESSCCCC-CCGGGGG-CTTCCEEECTTCTTCCBCCC-CTTCCCCCCEEECTTC--TTCCBCCTTGGG-C
T ss_pred             cCCCCCCEEEccCCCCCc-Cchhhcc-CCCCCEEECcCCcchhhhHH-HhcCCCCCCEEECCCC--Cchhhcchhhhc-C
Confidence            566777777777777763 3445666 88888888888887777776 7888889999999988  445677777888 9


Q ss_pred             CCCcEEEccCCcCCCccchhhcc
Q 045865          202 PSLKYLLLSYSTLGTNSSRILHQ  224 (225)
Q Consensus       202 ~~L~~L~l~~n~l~~~~~~~~~~  224 (225)
                      ++|+.|++++|.+.+.+|+.+..
T Consensus       277 ~~L~~L~L~~n~~~~~iP~~l~~  299 (328)
T 4fcg_A          277 TQLEKLDLRGCVNLSRLPSLIAQ  299 (328)
T ss_dssp             TTCCEEECTTCTTCCCCCGGGGG
T ss_pred             CCCCEEeCCCCCchhhccHHHhh
Confidence            99999999999999999987753

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=4.5e-25  Score=170.84  Aligned_cols=201  Identities=21%  Similarity=0.275  Sum_probs=135.2

Q ss_pred             CCcccCCCceeecCC--------------------cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCc
Q 045865            4 ATDCCQWERVECSNT--------------------TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGC   63 (225)
Q Consensus         4 ~~~~c~~~~~~~~~~--------------------~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~   63 (225)
                      ++++|.|.|..|.-.                    +..+++|++++|++.    .+++..|.++++|++|++++|.+...
T Consensus         1 ~~~~C~~~~~~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~i   76 (270)
T 2o6q_A            1 NEALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLS----SLPSKAFHRLTKLRLLYLNDNKLQTL   76 (270)
T ss_dssp             CCCCBGGGTCSBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCS----CCCTTSSSSCTTCCEEECCSSCCSCC
T ss_pred             CCccCCCCCCCCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCC----eeCHHHhcCCCCCCEEECCCCccCee
Confidence            468999999887521                    123566666666665    45555677777777888877777663


Q ss_pred             chhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHH
Q 045865           64 VENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQ  143 (225)
Q Consensus        64 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~  143 (225)
                      .+.    .+..+++|++|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+....+.
T Consensus        77 ~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  151 (270)
T 2o6q_A           77 PAG----IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKG  151 (270)
T ss_dssp             CTT----TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             Chh----hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHh
Confidence            333    3566777888888877777655666677777888888877776 44433667777788888887777643333


Q ss_pred             HHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCcc
Q 045865          144 SIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNS  218 (225)
Q Consensus       144 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~  218 (225)
                      .+.. +++|+.|++++|.++...+. .+.++++|+.|++++|++.  ...+..+.. +++|+.|++++|++....
T Consensus       152 ~~~~-l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~--~~~~~~~~~-l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          152 VFDK-LTSLKELRLYNNQLKRVPEG-AFDKLTELKTLKLDNNQLK--RVPEGAFDS-LEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             TTTT-CTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSSCCS--CCCTTTTTT-CTTCCEEECCSSCBCCSS
T ss_pred             HccC-CcccceeEecCCcCcEeChh-HhccCCCcCEEECCCCcCC--cCCHHHhcc-ccCCCEEEecCCCeeCCC
Confidence            3455 77788888888877744333 6777788888888888552  222233555 778888888888776543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.91  E-value=4.2e-25  Score=189.87  Aligned_cols=196  Identities=14%  Similarity=0.224  Sum_probs=153.7

Q ss_pred             CCCcccCC---CceeecCCcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcc-------------------
Q 045865            3 GATDCCQW---ERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKI-------------------   60 (225)
Q Consensus         3 ~~~~~c~~---~~~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i-------------------   60 (225)
                      .++|+|.|   .|+.|.. .++|+.|+++++++.+   . .+..+.++++|++|++++|.+                   
T Consensus        62 ~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~g---~-lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~  136 (636)
T 4eco_A           62 FNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASG---R-VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE  136 (636)
T ss_dssp             CSSCGGGTTCCTTEEECT-TCCEEEEECTTSCCEE---E-ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHH
T ss_pred             CCCCcccccCCCCeEEcC-CCCEEEEEecCcccCC---c-CChHHhcCccceEEECcCCccccCCccccccccccCchHH
Confidence            46899999   9999984 4899999999999873   3 446789999999999998854                   


Q ss_pred             -----------------------------------------------------------cCcchhhHHHHHhcCCCCCEE
Q 045865           61 -----------------------------------------------------------AGCVENEGIERLSRLNNLKML   81 (225)
Q Consensus        61 -----------------------------------------------------------~~~~~~~~~~~~~~l~~L~~L   81 (225)
                                                                                 .+ +|.    .++.+++|++|
T Consensus       137 ~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~----~l~~l~~L~~L  211 (636)
T 4eco_A          137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK----AVMRLTKLRQF  211 (636)
T ss_dssp             HHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG----GGGGCTTCCEE
T ss_pred             HHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCH----HHhcccCCCEE
Confidence                                                                       22 444    58899999999


Q ss_pred             ECCCCCCChh-----------------hHHhhh--cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCC-CcH-H
Q 045865           82 NLSGNSFNNS-----------------ILSSLT--HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSS-LHI-S  140 (225)
Q Consensus        82 ~l~~~~l~~~-----------------~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~-~  140 (225)
                      ++++|.+++.                 +|..+.  .+++|++|++++|.+.+.+|. .+..+++|+.|++++|. +.+ .
T Consensus       212 ~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~~l~~~~  290 (636)
T 4eco_A          212 YMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGEQ  290 (636)
T ss_dssp             EEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT-TTTTCSSCCEEECTTCTTSCHHH
T ss_pred             ECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH-HHhcCCCCCEEECcCCCCCcccc
Confidence            9999999885                 788888  999999999999998878886 88999999999999998 887 7


Q ss_pred             HHHHHHhhC------CCCCEEecccccccccccc-CCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCc
Q 045865          141 LLQSIASIF------PSLKNLSMSFCEVNGVVRG-QGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYST  213 (225)
Q Consensus       141 ~~~~~~~~~------~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~  213 (225)
                      +|..+.. +      ++|+.|++++|.++ .+|. ..++++++|+.|++++|++  .+.+| .++. +++|+.|++++|+
T Consensus       291 lp~~~~~-L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l--~g~ip-~~~~-l~~L~~L~L~~N~  364 (636)
T 4eco_A          291 LKDDWQA-LADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQL--EGKLP-AFGS-EIKLASLNLAYNQ  364 (636)
T ss_dssp             HHHHHHH-HHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCC--EEECC-CCEE-EEEESEEECCSSE
T ss_pred             chHHHHh-hhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcC--ccchh-hhCC-CCCCCEEECCCCc
Confidence            8877776 5      88888888888887 4432 2467777788888877744  33444 4444 4555555555555


Q ss_pred             CC
Q 045865          214 LG  215 (225)
Q Consensus       214 l~  215 (225)
                      ++
T Consensus       365 l~  366 (636)
T 4eco_A          365 IT  366 (636)
T ss_dssp             EE
T ss_pred             cc
Confidence            54

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=5.1e-24  Score=166.05  Aligned_cols=190  Identities=19%  Similarity=0.208  Sum_probs=133.5

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCC-CChhhHHhhh
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNS-FNNSILSSLT   97 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~l~   97 (225)
                      ...+++|+++++.+.    .+++..+..+++|++|++++|.+....+.    .+..+++|++|++++|. +....+..+.
T Consensus        31 ~~~l~~L~l~~n~i~----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~l~~~~~~~~~  102 (285)
T 1ozn_A           31 PAASQRIFLHGNRIS----HVPAASFRACRNLTILWLHSNVLARIDAA----AFTGLALLEQLDLSDNAQLRSVDPATFH  102 (285)
T ss_dssp             CTTCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred             CCCceEEEeeCCcCC----ccCHHHcccCCCCCEEECCCCccceeCHh----hcCCccCCCEEeCCCCCCccccCHHHhc
Confidence            457888888888887    56666778888888888888888775555    57778888888888886 6665567777


Q ss_pred             cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCC
Q 045865           98 HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSL  177 (225)
Q Consensus        98 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L  177 (225)
                      .+++|++|++++|.+. ..+...+..+++|+.|++++|.+....+..+.. +++|+.|++++|.+++. +...+..+++|
T Consensus       103 ~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~-~~~~~~~l~~L  179 (285)
T 1ozn_A          103 GLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-LGNLTHLFLHGNRISSV-PERAFRGLHSL  179 (285)
T ss_dssp             TCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCEE-CTTTTTTCTTC
T ss_pred             CCcCCCEEECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhcc-CCCccEEECCCCccccc-CHHHhcCcccc
Confidence            7888888888888776 333336677777888888777776443344555 77777777777777633 33257777777


Q ss_pred             cEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865          178 EHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL  222 (225)
Q Consensus       178 ~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~  222 (225)
                      +.|++++|++  .+..+..+.. +++|+.|++++|.+++..++.+
T Consensus       180 ~~L~l~~n~l--~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~  221 (285)
T 1ozn_A          180 DRLLLHQNRV--AHVHPHAFRD-LGRLMTLYLFANNLSALPTEAL  221 (285)
T ss_dssp             CEEECCSSCC--CEECTTTTTT-CTTCCEEECCSSCCSCCCHHHH
T ss_pred             CEEECCCCcc--cccCHhHccC-cccccEeeCCCCcCCcCCHHHc
Confidence            7777777743  3333555666 7777777777777776655544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.90  E-value=5e-24  Score=186.80  Aligned_cols=189  Identities=23%  Similarity=0.294  Sum_probs=142.6

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL   99 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l   99 (225)
                      ..+++|++++|++.    ...+..+.++++|++|++++|.+.+..|.    .+..+++|++|++++|.+.+..|..+..+
T Consensus       466 ~~L~~L~L~~N~l~----~~~p~~l~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~l  537 (768)
T 3rgz_A          466 KTLETLILDFNDLT----GEIPSGLSNCTNLNWISLSNNRLTGEIPK----WIGRLENLAILKLSNNSFSGNIPAELGDC  537 (768)
T ss_dssp             TTCCEEECCSSCCC----SCCCGGGGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCEEECCGGGGGC
T ss_pred             CCceEEEecCCccc----CcCCHHHhcCCCCCEEEccCCccCCcCCh----HHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence            45666666666665    23445566777777777777777766666    56777777777777777777677777777


Q ss_pred             CCCCEEEcCCCCCCCccchhh-----------------------------------------------------------
Q 045865          100 SSLRSLNLLWNRLEGSIDVKE-----------------------------------------------------------  120 (225)
Q Consensus       100 ~~L~~L~l~~n~~~~~~~~~~-----------------------------------------------------------  120 (225)
                      ++|+.|++++|.+.+.+|...                                                           
T Consensus       538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~  617 (768)
T 3rgz_A          538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS  617 (768)
T ss_dssp             TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred             CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence            888888887777654444311                                                           


Q ss_pred             ----------hccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccc
Q 045865          121 ----------LHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALN  190 (225)
Q Consensus       121 ----------~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~  190 (225)
                                +..+++|+.|++++|.+.+.+|..+.. +++|+.|++++|.+++.+|. .++++++|+.|++++|  .+.
T Consensus       618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~-l~~L~~L~Ls~N~l~g~ip~-~l~~L~~L~~LdLs~N--~l~  693 (768)
T 3rgz_A          618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGSIPD-EVGDLRGLNILDLSSN--KLD  693 (768)
T ss_dssp             CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG-CTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSS--CCE
T ss_pred             ceecccCchhhhccccccEEECcCCcccccCCHHHhc-cccCCEEeCcCCccCCCCCh-HHhCCCCCCEEECCCC--ccc
Confidence                      122456778888888888777888887 88899999999988888888 8888889999999999  556


Q ss_pred             hhHHHHHhhcCCCCcEEEccCCcCCCccchh
Q 045865          191 TSFLQIIGESMPSLKYLLLSYSTLGTNSSRI  221 (225)
Q Consensus       191 ~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~  221 (225)
                      +.+|..++. ++.|+.|++++|+++|.+|+.
T Consensus       694 g~ip~~l~~-l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          694 GRIPQAMSA-LTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             ECCCGGGGG-CCCCSEEECCSSEEEEECCSS
T ss_pred             CcCChHHhC-CCCCCEEECcCCcccccCCCc
Confidence            778888888 889999999999998888864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.90  E-value=1.2e-23  Score=185.29  Aligned_cols=194  Identities=15%  Similarity=0.240  Sum_probs=153.8

Q ss_pred             CceeecCCcCceEEeeccccccccchhHHhhhhhcCCCCccEEEc-cCCcccCc--------------------------
Q 045865           11 ERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDL-TQNKIAGC--------------------------   63 (225)
Q Consensus        11 ~~~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l-~~n~i~~~--------------------------   63 (225)
                      .|+.|.. .++|+.|+|+++++..   . .+..+.++++|+.|++ ++|.+.+.                          
T Consensus       315 ~GV~C~~-~~~V~~L~Ls~~~L~G---~-ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~  389 (876)
T 4ecn_A          315 PGVDLDN-NGRVTGLSLAGFGAKG---R-VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKK  389 (876)
T ss_dssp             TTEEECT-TSCEEEEECTTTCCEE---E-ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHH
T ss_pred             CceEecC-CCCEEEEECccCCCCC---c-CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhh
Confidence            9999984 6899999999999873   3 4467899999999999 66643221                          


Q ss_pred             --------------------------------------------------chhhHHHHHhcCCCCCEEECCCCCCCh---
Q 045865           64 --------------------------------------------------VENEGIERLSRLNNLKMLNLSGNSFNN---   90 (225)
Q Consensus        64 --------------------------------------------------~~~~~~~~~~~l~~L~~L~l~~~~l~~---   90 (225)
                                                                        +|.    .+..+++|+.|++++|.+++   
T Consensus       390 ~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~----~l~~L~~L~~L~Ls~N~Lsg~~i  465 (876)
T 4ecn_A          390 MFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK----AIQRLTKLQIIYFANSPFTYDNI  465 (876)
T ss_dssp             HHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECG----GGGGCTTCCEEEEESCCCCGGGB
T ss_pred             hhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhH----HHhcCCCCCEEECcCCcCCCCcc
Confidence                                                              444    58899999999999999988   


Q ss_pred             --------------hhHHhhh--cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCC-CcH-HHHHHHHhhCC--
Q 045865           91 --------------SILSSLT--HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSS-LHI-SLLQSIASIFP--  150 (225)
Q Consensus        91 --------------~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~-~~~~~~~~~~~--  150 (225)
                                    .+|..+.  .+++|++|++++|.+.+.+|. .+..+++|+.|++++|. +.+ .+|..+.. ++  
T Consensus       466 ~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~-L~~~  543 (876)
T 4ecn_A          466 AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTR-LADD  543 (876)
T ss_dssp             SSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGGGCSSCCEEECTTCTTSCHHHHHHHHHH-HHHC
T ss_pred             cccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH-HHhCCCCCCEEECcCCCCcccccchHHHHh-hhhc
Confidence                          3787776  999999999999998878886 89999999999999998 887 77776665 54  


Q ss_pred             -----CCCEEecccccccccccc-CCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865          151 -----SLKNLSMSFCEVNGVVRG-QGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL  222 (225)
Q Consensus       151 -----~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~  222 (225)
                           +|+.|++++|.++ .+|. ..+.++++|+.|++++|++.   .+| .++. +++|+.|++++|.++ .+|..+
T Consensus       544 ~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~---~lp-~~~~-L~~L~~L~Ls~N~l~-~lp~~l  614 (876)
T 4ecn_A          544 EDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR---HLE-AFGT-NVKLTDLKLDYNQIE-EIPEDF  614 (876)
T ss_dssp             TTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC---BCC-CCCT-TSEESEEECCSSCCS-CCCTTS
T ss_pred             ccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc---cch-hhcC-CCcceEEECcCCccc-cchHHH
Confidence                 8999999999887 4443 25777888888888888552   555 5666 777777777777777 555443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=1.2e-23  Score=161.14  Aligned_cols=192  Identities=18%  Similarity=0.245  Sum_probs=144.6

Q ss_pred             cccCCCceeecCCcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCC
Q 045865            6 DCCQWERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSG   85 (225)
Q Consensus         6 ~~c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~   85 (225)
                      +||.|.|..|..   ..++++++++.+.    .++...   .+.++.|++++|.+....+.    .+..+++|++|++++
T Consensus         3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~----~~p~~~---~~~l~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~   68 (251)
T 3m19_A            3 TCETVTGCTCNE---GKKEVDCQGKSLD----SVPSGI---PADTEKLDLQSTGLATLSDA----TFRGLTKLTWLNLDY   68 (251)
T ss_dssp             -CHHHHSSEEEG---GGTEEECTTCCCS----SCCSCC---CTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTT
T ss_pred             cCCCCCceEcCC---CCeEEecCCCCcc----ccCCCC---CCCCCEEEccCCCcCccCHh----HhcCcccCCEEECCC
Confidence            578888888853   4557888888876    444432   25788888888888876665    578888899999988


Q ss_pred             CCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccc
Q 045865           86 NSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGV  165 (225)
Q Consensus        86 ~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  165 (225)
                      |.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+....+..+.. +++|+.|++++|.+++.
T Consensus        69 n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~  146 (251)
T 3m19_A           69 NQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR-LTKLKELRLNTNQLQSI  146 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCC
T ss_pred             CcCCccCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhcc-CCcccEEECcCCcCCcc
Confidence            8888877777888888999999888887 555446778888889999888887444444555 88888999988888744


Q ss_pred             cccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCc
Q 045865          166 VRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTN  217 (225)
Q Consensus       166 ~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~  217 (225)
                      .+. .+..+++|+.|++++|++  .+..+..+.. +++|+.|++++|+++..
T Consensus       147 ~~~-~~~~l~~L~~L~L~~N~l--~~~~~~~~~~-l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          147 PAG-AFDKLTNLQTLSLSTNQL--QSVPHGAFDR-LGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CTT-TTTTCTTCCEEECCSSCC--SCCCTTTTTT-CTTCCEEECCSCCBCTT
T ss_pred             CHH-HcCcCcCCCEEECCCCcC--CccCHHHHhC-CCCCCEEEeeCCceeCC
Confidence            443 788888899999998855  3333345666 88888999999888876

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=3.2e-24  Score=169.47  Aligned_cols=186  Identities=20%  Similarity=0.238  Sum_probs=127.1

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL   99 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l   99 (225)
                      .+++.|++++|.+.    ...+..+.++++|++|++++|.+.+..|.    .+..+++|++|++++|.+++..|..+..+
T Consensus       101 ~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~l  172 (313)
T 1ogq_A          101 TQLHYLYITHTNVS----GAIPDFLSQIKTLVTLDFSYNALSGTLPP----SISSLPNLVGITFDGNRISGAIPDSYGSF  172 (313)
T ss_dssp             TTCSEEEEEEECCE----EECCGGGGGCTTCCEEECCSSEEESCCCG----GGGGCTTCCEEECCSSCCEEECCGGGGCC
T ss_pred             CCCCEEECcCCeeC----CcCCHHHhCCCCCCEEeCCCCccCCcCCh----HHhcCCCCCeEECcCCcccCcCCHHHhhh
Confidence            34555555555554    22333455566666666666666554554    45566666666666666655555566666


Q ss_pred             C-CCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc
Q 045865          100 S-SLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE  178 (225)
Q Consensus       100 ~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  178 (225)
                      + .|++|++++|.+.+..|. .+..+. |+.|++++|.+.+..+..+.. +++|+.|++++|.+++..+.  +..+++|+
T Consensus       173 ~~~L~~L~L~~N~l~~~~~~-~~~~l~-L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~--~~~l~~L~  247 (313)
T 1ogq_A          173 SKLFTSMTISRNRLTGKIPP-TFANLN-LAFVDLSRNMLEGDASVLFGS-DKNTQKIHLAKNSLAFDLGK--VGLSKNLN  247 (313)
T ss_dssp             CTTCCEEECCSSEEEEECCG-GGGGCC-CSEEECCSSEEEECCGGGCCT-TSCCSEEECCSSEECCBGGG--CCCCTTCC
T ss_pred             hhcCcEEECcCCeeeccCCh-HHhCCc-ccEEECcCCcccCcCCHHHhc-CCCCCEEECCCCceeeecCc--ccccCCCC
Confidence            5 666666666666544443 555554 777777777766555556666 88899999999988755444  78889999


Q ss_pred             EEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchh
Q 045865          179 HFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRI  221 (225)
Q Consensus       179 ~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~  221 (225)
                      +|++++|++  .+.+|..+.. +++|+.|++++|++++.+|..
T Consensus       248 ~L~Ls~N~l--~~~~p~~l~~-l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          248 GLDLRNNRI--YGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EEECCSSCC--EECCCGGGGG-CTTCCEEECCSSEEEEECCCS
T ss_pred             EEECcCCcc--cCcCChHHhc-CcCCCEEECcCCcccccCCCC
Confidence            999999954  5577888888 999999999999999988875

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=5.6e-23  Score=160.16  Aligned_cols=187  Identities=19%  Similarity=0.205  Sum_probs=159.9

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCc-ccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhh
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNK-IAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT   97 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~   97 (225)
                      ..+++.|++++|.+.    .+.+..+..+++|++|++++|. +....+.    .+..+++|++|++++|.+....+..+.
T Consensus        55 ~~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~  126 (285)
T 1ozn_A           55 CRNLTILWLHSNVLA----RIDAAAFTGLALLEQLDLSDNAQLRSVDPA----TFHGLGRLHTLHLDRCGLQELGPGLFR  126 (285)
T ss_dssp             CTTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSCTTCCCCCTT----TTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             CCCCCEEECCCCccc----eeCHhhcCCccCCCEEeCCCCCCccccCHH----HhcCCcCCCEEECCCCcCCEECHhHhh
Confidence            468999999999987    5667788999999999999997 7765555    588999999999999999987788899


Q ss_pred             cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCC
Q 045865           98 HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSL  177 (225)
Q Consensus        98 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L  177 (225)
                      .+++|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+++..+. .+.++++|
T Consensus       127 ~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~-~~~~l~~L  203 (285)
T 1ozn_A          127 GLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG-LHSLDRLLLHQNRVAHVHPH-AFRDLGRL  203 (285)
T ss_dssp             TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECTT-TTTTCTTC
T ss_pred             CCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccCHHHhcC-ccccCEEECCCCcccccCHh-HccCcccc
Confidence            9999999999999997 555546888999999999999988544445666 89999999999999866666 89999999


Q ss_pred             cEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccc
Q 045865          178 EHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSS  219 (225)
Q Consensus       178 ~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~  219 (225)
                      +.|++++|++  .+..+..+.. +++|+.|++++|+++...+
T Consensus       204 ~~L~l~~n~l--~~~~~~~~~~-l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          204 MTLYLFANNL--SALPTEALAP-LRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             CEEECCSSCC--SCCCHHHHTT-CTTCCEEECCSSCEECSGG
T ss_pred             cEeeCCCCcC--CcCCHHHccc-CcccCEEeccCCCccCCCC
Confidence            9999999955  4444566888 9999999999999986544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=2e-23  Score=182.93  Aligned_cols=135  Identities=26%  Similarity=0.317  Sum_probs=82.8

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL   99 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l   99 (225)
                      ..++.|++++|.+.    ...+..+..+++|++|++++|.+.+..|.    .+..+++|++|++++|.+.+..|..+..+
T Consensus       418 ~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~l  489 (768)
T 3rgz_A          418 SELVSLHLSFNYLS----GTIPSSLGSLSKLRDLKLWLNMLEGEIPQ----ELMYVKTLETLILDFNDLTGEIPSGLSNC  489 (768)
T ss_dssp             TTCCEEECCSSEEE----SCCCGGGGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred             CCCCEEECcCCccc----CcccHHHhcCCCCCEEECCCCcccCcCCH----HHcCCCCceEEEecCCcccCcCCHHHhcC
Confidence            46777777777765    23444556666666666666666655555    45666666666666666665556666666


Q ss_pred             CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEecccccccc
Q 045865          100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNG  164 (225)
Q Consensus       100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  164 (225)
                      ++|++|++++|.+.+.+|. .+..+++|+.|++++|.+.+..|..+.. +++|+.|++++|.+++
T Consensus       490 ~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~g  552 (768)
T 3rgz_A          490 TNLNWISLSNNRLTGEIPK-WIGRLENLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNG  552 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCEEECCGGGGG-CTTCCEEECCSSEEES
T ss_pred             CCCCEEEccCCccCCcCCh-HHhcCCCCCEEECCCCcccCcCCHHHcC-CCCCCEEECCCCccCC
Confidence            6666666666666545554 5555666666666666655555555555 5555555555555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.89  E-value=2e-23  Score=164.26  Aligned_cols=201  Identities=20%  Similarity=0.253  Sum_probs=118.7

Q ss_pred             cCCCceeecCC---------cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcc--hhhHHHHHhcCC
Q 045865            8 CQWERVECSNT---------TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCV--ENEGIERLSRLN   76 (225)
Q Consensus         8 c~~~~~~~~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~~~~~l~   76 (225)
                      |.|.++.|...         ...+++|++++|++.    .++...|.++++|++|++++|.+....  +.    .+..++
T Consensus         7 C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~~~~~   78 (306)
T 2z66_A            7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ----SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ----SDFGTT   78 (306)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCEEEEEEH----HHHSCS
T ss_pred             eCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccC----ccCHhHhhccccCCEEECCCCccCcccCccc----cccccc
Confidence            77888888752         257899999999987    677777899999999999999887432  33    355677


Q ss_pred             CCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHH---------------
Q 045865           77 NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISL---------------  141 (225)
Q Consensus        77 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~---------------  141 (225)
                      +|++|++++|.+.. .+..+..+++|++|++++|.+....+...+..+++|+.|++++|.+.+..               
T Consensus        79 ~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  157 (306)
T 2z66_A           79 SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM  157 (306)
T ss_dssp             CCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred             ccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence            88888887777654 33445555666666666665542221123444445555555544443322               


Q ss_pred             ----------HHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccC
Q 045865          142 ----------LQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY  211 (225)
Q Consensus       142 ----------~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~  211 (225)
                                +..+.. +++|+.|++++|.+++..+. .+..+++|+.|++++|++.  +..+..+.. +++|+.|++++
T Consensus       158 ~~n~l~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~--~~~~~~~~~-l~~L~~L~L~~  232 (306)
T 2z66_A          158 AGNSFQENFLPDIFTE-LRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMSHNNFF--SLDTFPYKC-LNSLQVLDYSL  232 (306)
T ss_dssp             TTCEEGGGEECSCCTT-CTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCS--BCCSGGGTT-CTTCCEEECTT
T ss_pred             CCCccccccchhHHhh-CcCCCEEECCCCCcCCcCHH-HhcCCCCCCEEECCCCccC--ccChhhccC-cccCCEeECCC
Confidence                      233333 45555555555555433333 4555555555555555432  111122444 56666666666


Q ss_pred             CcCCCccchhh
Q 045865          212 STLGTNSSRIL  222 (225)
Q Consensus       212 n~l~~~~~~~~  222 (225)
                      |++++..|..+
T Consensus       233 N~l~~~~~~~~  243 (306)
T 2z66_A          233 NHIMTSKKQEL  243 (306)
T ss_dssp             SCCCBCSSSSC
T ss_pred             CCCcccCHHHH
Confidence            66665555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=1.4e-22  Score=156.87  Aligned_cols=183  Identities=20%  Similarity=0.261  Sum_probs=112.7

Q ss_pred             EEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCC
Q 045865           23 IALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL  102 (225)
Q Consensus        23 ~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L  102 (225)
                      +.++++++++.    .++...   .+.+++|++++|.+....+.    .+..+++|++|++++|.++...+..+..+++|
T Consensus        19 ~~l~~~~~~l~----~ip~~~---~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L   87 (270)
T 2o6q_A           19 NSVDCSSKKLT----AIPSNI---PADTKKLDLQSNKLSSLPSK----AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL   87 (270)
T ss_dssp             TEEECTTSCCS----SCCSCC---CTTCSEEECCSSCCSCCCTT----SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTC
T ss_pred             CEEEccCCCCC----ccCCCC---CCCCCEEECcCCCCCeeCHH----HhcCCCCCCEEECCCCccCeeChhhhcCCCCC
Confidence            35666666665    333222   14566777777777664443    46667777777777777766555555667777


Q ss_pred             CEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEc
Q 045865          103 RSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDM  182 (225)
Q Consensus       103 ~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l  182 (225)
                      ++|++++|.+. .++...+..+++|+.|++++|.+....+..+.. +++|+.|++++|.+++. +...+..+++|+.|++
T Consensus        88 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L  164 (270)
T 2o6q_A           88 ETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS-LTKLTYLSLGYNELQSL-PKGVFDKLTSLKELRL  164 (270)
T ss_dssp             CEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEEC
T ss_pred             CEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCc-CcCCCEEECCCCcCCcc-CHhHccCCcccceeEe
Confidence            77777777766 444435666677777777777766443444445 67777777777776633 3325667777777777


Q ss_pred             cCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865          183 RFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL  222 (225)
Q Consensus       183 ~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~  222 (225)
                      ++|++  ....+..+.. +++|+.|++++|++++..+..|
T Consensus       165 ~~n~l--~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~  201 (270)
T 2o6q_A          165 YNNQL--KRVPEGAFDK-LTELKTLKLDNNQLKRVPEGAF  201 (270)
T ss_dssp             CSSCC--SCCCTTTTTT-CTTCCEEECCSSCCSCCCTTTT
T ss_pred             cCCcC--cEeChhHhcc-CCCcCEEECCCCcCCcCCHHHh
Confidence            77744  2222233555 6777777777777776555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.88  E-value=1e-22  Score=163.37  Aligned_cols=202  Identities=25%  Similarity=0.296  Sum_probs=165.8

Q ss_pred             CCcccCCCceeecCC-----------cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHH
Q 045865            4 ATDCCQWERVECSNT-----------TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERL   72 (225)
Q Consensus         4 ~~~~c~~~~~~~~~~-----------~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~   72 (225)
                      ...+|.|.++ |.-.           ...+++|++++|++.    .+++..+.++++|++|++++|.+....+.    .+
T Consensus        26 ~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~   96 (353)
T 2z80_A           26 ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRIT----YISNSDLQRCVNLQALVLTSNGINTIEED----SF   96 (353)
T ss_dssp             -CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTT----TT
T ss_pred             cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCc----ccCHHHhccCCCCCEEECCCCccCccCHh----hc
Confidence            3567888877 4421           247899999999997    66777889999999999999999886565    58


Q ss_pred             hcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccch-hhhccCCCCceeecCCCC-CcHHHHHHHHhhCC
Q 045865           73 SRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDV-KELHNFTNLEYLTLESSS-LHISLLQSIASIFP  150 (225)
Q Consensus        73 ~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~  150 (225)
                      ..+++|++|++++|.++...+..+..+++|++|++++|.+. .++. ..+..+++|+.|++++|. +....+..+.. ++
T Consensus        97 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-l~  174 (353)
T 2z80_A           97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG-LT  174 (353)
T ss_dssp             TTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT-CC
T ss_pred             CCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccC-CC
Confidence            89999999999999999877777899999999999999997 5553 468889999999999984 55444456666 89


Q ss_pred             CCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccch
Q 045865          151 SLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSR  220 (225)
Q Consensus       151 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~  220 (225)
                      +|+.|++++|.+++..+. .+..+++|++|++++|++   ..++..+...+++|+.|++++|.+++..+.
T Consensus       175 ~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l---~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  240 (353)
T 2z80_A          175 FLEELEIDASDLQSYEPK-SLKSIQNVSHLILHMKQH---ILLLEIFVDVTSSVECLELRDTDLDTFHFS  240 (353)
T ss_dssp             EEEEEEEEETTCCEECTT-TTTTCSEEEEEEEECSCS---TTHHHHHHHHTTTEEEEEEESCBCTTCCCC
T ss_pred             CCCEEECCCCCcCccCHH-HHhccccCCeecCCCCcc---ccchhhhhhhcccccEEECCCCcccccccc
Confidence            999999999999866666 899999999999999965   455554433399999999999999986544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=5.6e-22  Score=153.60  Aligned_cols=183  Identities=20%  Similarity=0.285  Sum_probs=141.5

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH   98 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~   98 (225)
                      ...++.|+++++.+.    .+.  .+..+++|++|++++|.+.. .+     .+..+++|++|++++|.+++..+..+..
T Consensus        40 l~~L~~L~l~~~~i~----~~~--~l~~l~~L~~L~l~~n~l~~-~~-----~l~~l~~L~~L~L~~n~l~~~~~~~~~~  107 (272)
T 3rfs_A           40 LNSIDQIIANNSDIK----SVQ--GIQYLPNVRYLALGGNKLHD-IS-----ALKELTNLTYLILTGNQLQSLPNGVFDK  107 (272)
T ss_dssp             HTTCCEEECTTSCCC----CCT--TGGGCTTCCEEECTTSCCCC-CG-----GGTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             ccceeeeeeCCCCcc----ccc--ccccCCCCcEEECCCCCCCC-ch-----hhcCCCCCCEEECCCCccCccChhHhcC
Confidence            457888899888876    222  36778889999999988876 33     3788899999999999888777777788


Q ss_pred             CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc
Q 045865           99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE  178 (225)
Q Consensus        99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  178 (225)
                      +++|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+++..+. .+..+++|+
T Consensus       108 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~  184 (272)
T 3rfs_A          108 LTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK-LTNLTELDLSYNQLQSLPEG-VFDKLTQLK  184 (272)
T ss_dssp             CTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTT-TTTTCTTCC
T ss_pred             CcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhcc-CccCCEEECCCCCcCccCHH-HhcCCccCC
Confidence            899999999999887 444436788888999999998887544444555 88899999999988854444 778888999


Q ss_pred             EEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccc
Q 045865          179 HFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSS  219 (225)
Q Consensus       179 ~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~  219 (225)
                      .|++++|++  .+..+..+.. +++|+.|++++|++.+..|
T Consensus       185 ~L~L~~N~l--~~~~~~~~~~-l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          185 DLRLYQNQL--KSVPDGVFDR-LTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             EEECCSSCC--SCCCTTTTTT-CTTCCEEECCSSCBCCCTT
T ss_pred             EEECCCCcC--CccCHHHHhC-CcCCCEEEccCCCccccCc
Confidence            999999955  3333445666 8899999999998887665

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.87  E-value=5.2e-22  Score=163.70  Aligned_cols=188  Identities=22%  Similarity=0.262  Sum_probs=124.1

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL   99 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l   99 (225)
                      ..++.|++++|++.    .+.+..|.++++|++|++++|.+....+.    .|..+++|++|++++|.++...+..+..+
T Consensus        64 ~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  135 (440)
T 3zyj_A           64 TNTRLLNLHENQIQ----IIKVNSFKHLRHLEILQLSRNHIRTIEIG----AFNGLANLNTLELFDNRLTTIPNGAFVYL  135 (440)
T ss_dssp             TTCSEEECCSCCCC----EECTTTTSSCSSCCEEECCSSCCCEECGG----GGTTCSSCCEEECCSSCCSSCCTTTSCSC
T ss_pred             CCCcEEEccCCcCC----eeCHHHhhCCCCCCEEECCCCcCCccChh----hccCCccCCEEECCCCcCCeeCHhHhhcc
Confidence            46778888888887    56666777888888888888887765444    57777788888888777776555566677


Q ss_pred             CCCCEEEcCCCCCCCccchhhh-------------------------ccCCCCceeecCCCCCcHHHHHHHHhhCCCCCE
Q 045865          100 SSLRSLNLLWNRLEGSIDVKEL-------------------------HNFTNLEYLTLESSSLHISLLQSIASIFPSLKN  154 (225)
Q Consensus       100 ~~L~~L~l~~n~~~~~~~~~~~-------------------------~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~  154 (225)
                      ++|++|++++|.+. .++...+                         ..+++|+.|++++|.+.. ++ .+.. +++|+.
T Consensus       136 ~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~-l~~L~~  211 (440)
T 3zyj_A          136 SKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTP-LIKLDE  211 (440)
T ss_dssp             SSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTT-CSSCCE
T ss_pred             ccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCC-CcccCE
Confidence            77777777777665 3333233                         444555555555555442 12 2333 566666


Q ss_pred             EeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhhc
Q 045865          155 LSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRILH  223 (225)
Q Consensus       155 L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~~  223 (225)
                      |++++|.+++..+. .|.++++|+.|++++|++  .+..+..+.. +++|+.|+|++|+|++..+..|.
T Consensus       212 L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n~l--~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~  276 (440)
T 3zyj_A          212 LDLSGNHLSAIRPG-SFQGLMHLQKLWMIQSQI--QVIERNAFDN-LQSLVEINLAHNNLTLLPHDLFT  276 (440)
T ss_dssp             EECTTSCCCEECTT-TTTTCTTCCEEECTTCCC--CEECTTSSTT-CTTCCEEECTTSCCCCCCTTTTS
T ss_pred             EECCCCccCccChh-hhccCccCCEEECCCCce--eEEChhhhcC-CCCCCEEECCCCCCCccChhHhc
Confidence            77777766644444 677777777777777744  3333445666 78888888888888876665543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=3.1e-22  Score=155.05  Aligned_cols=182  Identities=23%  Similarity=0.210  Sum_probs=155.2

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH   98 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~   98 (225)
                      ...++.|++++|.+..    +  ..+..+++|++|++++|.+....+.    .+..+++|++|++++|.+++..+..+..
T Consensus        62 l~~L~~L~l~~n~l~~----~--~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~  131 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHD----I--SALKELTNLTYLILTGNQLQSLPNG----VFDKLTNLKELVLVENQLQSLPDGVFDK  131 (272)
T ss_dssp             CTTCCEEECTTSCCCC----C--GGGTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             CCCCcEEECCCCCCCC----c--hhhcCCCCCCEEECCCCccCccChh----HhcCCcCCCEEECCCCcCCccCHHHhcc
Confidence            4689999999999873    2  3678999999999999999985555    5789999999999999999877777899


Q ss_pred             CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc
Q 045865           99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE  178 (225)
Q Consensus        99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  178 (225)
                      +++|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+++..+. .+..+++|+
T Consensus       132 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~  208 (272)
T 3rfs_A          132 LTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK-LTQLKDLRLYQNQLKSVPDG-VFDRLTSLQ  208 (272)
T ss_dssp             CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCSCCCTT-TTTTCTTCC
T ss_pred             CCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcC-CccCCEEECCCCcCCccCHH-HHhCCcCCC
Confidence            999999999999998 555446788999999999999998655555566 89999999999999865554 789999999


Q ss_pred             EEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhhc
Q 045865          179 HFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRILH  223 (225)
Q Consensus       179 ~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~~  223 (225)
                      .+++++|++.         +. +++|+.+++..|.++|.+|.++.
T Consensus       209 ~L~l~~N~~~---------~~-~~~l~~l~~~~n~~~g~ip~~~~  243 (272)
T 3rfs_A          209 YIWLHDNPWD---------CT-CPGIRYLSEWINKHSGVVRNSAG  243 (272)
T ss_dssp             EEECCSSCBC---------CC-TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred             EEEccCCCcc---------cc-CcHHHHHHHHHHhCCCcccCccc
Confidence            9999999652         33 78899999999999999998765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.87  E-value=4.6e-22  Score=164.56  Aligned_cols=187  Identities=22%  Similarity=0.212  Sum_probs=125.1

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL   99 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l   99 (225)
                      ..++.|++++|++.    .+.+..|.++++|++|++++|.+....+.    .|..+++|++|++++|.++...+..+..+
T Consensus        75 ~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  146 (452)
T 3zyi_A           75 SNTRYLNLMENNIQ----MIQADTFRHLHHLEVLQLGRNSIRQIEVG----AFNGLASLNTLELFDNWLTVIPSGAFEYL  146 (452)
T ss_dssp             TTCSEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCSBCCTTTSSSC
T ss_pred             CCccEEECcCCcCc----eECHHHcCCCCCCCEEECCCCccCCcChh----hccCcccCCEEECCCCcCCccChhhhccc
Confidence            57899999999987    56677888899999999999988875555    57888888888888888887666677778


Q ss_pred             CCCCEEEcCCCCCCCccchhhhccCCCCcee-------------------------ecCCCCCcHHHHHHHHhhCCCCCE
Q 045865          100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYL-------------------------TLESSSLHISLLQSIASIFPSLKN  154 (225)
Q Consensus       100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l-------------------------~l~~~~~~~~~~~~~~~~~~~L~~  154 (225)
                      ++|++|++++|.+. .++...+..+++|+.|                         ++++|.+.+. + .+.. +++|+.
T Consensus       147 ~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~-l~~L~~  222 (452)
T 3zyi_A          147 SKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTP-LVGLEE  222 (452)
T ss_dssp             TTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTT-CTTCCE
T ss_pred             CCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccc-cccccE
Confidence            88888888888776 4443344444444444                         4444444321 1 2333 455666


Q ss_pred             EeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865          155 LSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL  222 (225)
Q Consensus       155 L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~  222 (225)
                      |++++|.+++..+. .|.++++|+.|++++|++  ....+..+.. +++|+.|++++|+|++..+..|
T Consensus       223 L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n~l--~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~  286 (452)
T 3zyi_A          223 LEMSGNHFPEIRPG-SFHGLSSLKKLWVMNSQV--SLIERNAFDG-LASLVELNLAHNNLSSLPHDLF  286 (452)
T ss_dssp             EECTTSCCSEECGG-GGTTCTTCCEEECTTSCC--CEECTTTTTT-CTTCCEEECCSSCCSCCCTTSS
T ss_pred             EECcCCcCcccCcc-cccCccCCCEEEeCCCcC--ceECHHHhcC-CCCCCEEECCCCcCCccChHHh
Confidence            66666665544344 566666666666666643  2333445555 7777777777777776555544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.86  E-value=5.7e-22  Score=163.88  Aligned_cols=141  Identities=23%  Similarity=0.305  Sum_probs=115.6

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL   99 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l   99 (225)
                      .+++.|++++|.+.    .+.+..+.++++|++|++++|.+....++.   .|..+++|++|++++|.+.+..+..+..+
T Consensus        30 ~~l~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  102 (455)
T 3v47_A           30 AHVNYVDLSLNSIA----ELNETSFSRLQDLQFLKVEQQTPGLVIRNN---TFRGLSSLIILKLDYNQFLQLETGAFNGL  102 (455)
T ss_dssp             TTCCEEECCSSCCC----EECTTTTSSCTTCCEEECCCCSTTCEECTT---TTTTCTTCCEEECTTCTTCEECTTTTTTC
T ss_pred             CccCEEEecCCccC----cCChhHhccCccccEEECcCCcccceECcc---cccccccCCEEeCCCCccCccChhhccCc
Confidence            57899999999997    566778899999999999999887545432   57889999999999999988778889999


Q ss_pred             CCCCEEEcCCCCCCCccch-hhhccCCCCceeecCCCCCcHHHHHH-HHhhCCCCCEEecccccccccccc
Q 045865          100 SSLRSLNLLWNRLEGSIDV-KELHNFTNLEYLTLESSSLHISLLQS-IASIFPSLKNLSMSFCEVNGVVRG  168 (225)
Q Consensus       100 ~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~  168 (225)
                      ++|++|++++|.+.+..+. ..+..+++|+.|++++|.+.+..+.. +.. +++|+.|++++|.+++..+.
T Consensus       103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~  172 (455)
T 3v47_A          103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN-MRRFHVLDLTFNKVKSICEE  172 (455)
T ss_dssp             TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGG-CTTCCEEECTTCCBSCCCTT
T ss_pred             ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCC-CCcccEEeCCCCcccccChh
Confidence            9999999999998754333 13778899999999999987655554 555 89999999999988755443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.86  E-value=7.5e-22  Score=163.29  Aligned_cols=154  Identities=18%  Similarity=0.211  Sum_probs=114.9

Q ss_pred             ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCC
Q 045865           21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS  100 (225)
Q Consensus        21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~  100 (225)
                      ....++.++..+.    .++...   .+.+++|++++|.+....+.    .|..+++|++|++++|.+....+..+..++
T Consensus        55 ~~~~v~c~~~~l~----~iP~~~---~~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  123 (452)
T 3zyi_A           55 QFSKVVCTRRGLS----EVPQGI---PSNTRYLNLMENNIQMIQAD----TFRHLHHLEVLQLGRNSIRQIEVGAFNGLA  123 (452)
T ss_dssp             SSCEEECCSSCCS----SCCSCC---CTTCSEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CCcEEEECCCCcC----ccCCCC---CCCccEEECcCCcCceECHH----HcCCCCCCCEEECCCCccCCcChhhccCcc
Confidence            3456777777776    444422   25789999999999986666    689999999999999999988888999999


Q ss_pred             CCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEE
Q 045865          101 SLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHF  180 (225)
Q Consensus       101 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l  180 (225)
                      +|++|++++|.+. .++...+..+++|+.|++++|.+....+..+.. +++|+.|++++|+..+.++...+.++++|+.|
T Consensus       124 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L  201 (452)
T 3zyi_A          124 SLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR-VPSLMRLDLGELKKLEYISEGAFEGLFNLKYL  201 (452)
T ss_dssp             TCCEEECCSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTT-CTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred             cCCEEECCCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhc-CCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence            9999999999998 666557888999999999999987443334444 67777777776443334443355555555555


Q ss_pred             EccCCcc
Q 045865          181 DMRFARI  187 (225)
Q Consensus       181 ~l~~n~i  187 (225)
                      ++++|++
T Consensus       202 ~L~~n~l  208 (452)
T 3zyi_A          202 NLGMCNI  208 (452)
T ss_dssp             ECTTSCC
T ss_pred             ECCCCcc
Confidence            5555543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.86  E-value=1.9e-22  Score=156.49  Aligned_cols=187  Identities=20%  Similarity=0.259  Sum_probs=125.7

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL   99 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l   99 (225)
                      ..+++|++++|++.    .+++..+.++++|++|++++|.+....+.    .+..+++|++|++++|.+....+..+..+
T Consensus        28 ~~l~~L~ls~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (276)
T 2z62_A           28 FSTKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLALGAFSGL   99 (276)
T ss_dssp             TTCCEEECTTCCCC----EECTTTTTTCTTCSEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred             CCccEEECCCCccc----ccCHhHhccccCCcEEECCCCcCCccCHH----HccCCcCCCEEECCCCccCccChhhhcCC
Confidence            46888888888887    55666777888888888888888765444    46778888888888888877666677777


Q ss_pred             CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHH-HHHHHHhhCCCCCEEecccccccccccc----------
Q 045865          100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHIS-LLQSIASIFPSLKNLSMSFCEVNGVVRG----------  168 (225)
Q Consensus       100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~----------  168 (225)
                      ++|++|++.+|.+. .++...+..+++|+.|++++|.+.+. .+..+.. +++|+.|++++|.+++..+.          
T Consensus       100 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  177 (276)
T 2z62_A          100 SSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDLRVLHQMPL  177 (276)
T ss_dssp             TTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-CTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred             ccccEEECCCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhcc-CCCCCEEECCCCCCCcCCHHHhhhhhhccc
Confidence            77777777777776 33322466667777777777766532 3445555 67777777777766532211          


Q ss_pred             ----------------CCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccc
Q 045865          169 ----------------QGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSS  219 (225)
Q Consensus       169 ----------------~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~  219 (225)
                                      .......+|+.|++++|++  .+..+..+.. +++|+.|++++|+++...|
T Consensus       178 l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~~~~-l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          178 LNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQL--KSVPDGIFDR-LTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCC--SCCCTTTTTT-CCSCCEEECCSSCBCCCTT
T ss_pred             cceeeecCCCcccccCccccCCCcccEEECCCCce--eecCHhHhcc-cccccEEEccCCcccccCC
Confidence                            0112223678888888855  2222233466 8888888888888887665

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.86  E-value=1.2e-21  Score=161.55  Aligned_cols=183  Identities=18%  Similarity=0.200  Sum_probs=131.4

Q ss_pred             ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCC
Q 045865           21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS  100 (225)
Q Consensus        21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~  100 (225)
                      ....++.++..+.    .++...   .+.++.|++++|.+....+.    .|..+++|++|++++|.+....+..|..++
T Consensus        44 ~~~~v~c~~~~l~----~iP~~~---~~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~  112 (440)
T 3zyj_A           44 QFSKVICVRKNLR----EVPDGI---STNTRLLNLHENQIQIIKVN----SFKHLRHLEILQLSRNHIRTIEIGAFNGLA  112 (440)
T ss_dssp             TSCEEECCSCCCS----SCCSCC---CTTCSEEECCSCCCCEECTT----TTSSCSSCCEEECCSSCCCEECGGGGTTCS
T ss_pred             CCCEEEeCCCCcC----cCCCCC---CCCCcEEEccCCcCCeeCHH----HhhCCCCCCEEECCCCcCCccChhhccCCc
Confidence            3456777777776    455433   25788999999999886655    689999999999999999988888999999


Q ss_pred             CCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEE
Q 045865          101 SLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHF  180 (225)
Q Consensus       101 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l  180 (225)
                      +|++|++++|.+. .++...+..+++|+.|++++|.+....+..+.. +++|+.|++++|+....++...|.++++|+.|
T Consensus       113 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~-l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L  190 (440)
T 3zyj_A          113 NLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR-IPSLRRLDLGELKRLSYISEGAFEGLSNLRYL  190 (440)
T ss_dssp             SCCEEECCSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTT-CTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred             cCCEEECCCCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhh-CcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence            9999999999998 666557889999999999999987544444555 77788888877544334444456666666666


Q ss_pred             EccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchh
Q 045865          181 DMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRI  221 (225)
Q Consensus       181 ~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~  221 (225)
                      ++++|++.   .+| .+.. +++|+.|++++|.+++..|..
T Consensus       191 ~L~~n~l~---~~~-~~~~-l~~L~~L~Ls~N~l~~~~~~~  226 (440)
T 3zyj_A          191 NLAMCNLR---EIP-NLTP-LIKLDELDLSGNHLSAIRPGS  226 (440)
T ss_dssp             ECTTSCCS---SCC-CCTT-CSSCCEEECTTSCCCEECTTT
T ss_pred             cCCCCcCc---ccc-ccCC-CcccCEEECCCCccCccChhh
Confidence            66666442   222 1333 555555555555555444443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=1.4e-21  Score=152.80  Aligned_cols=180  Identities=18%  Similarity=0.202  Sum_probs=145.5

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH   98 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~   98 (225)
                      ...++.|++++|.+.    .+.+..+..+++|++|++++|.+.. .+.     ...+++|++|++++|.+.. +|..+..
T Consensus        30 ~~~l~~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~n~l~~-~~~-----~~~l~~L~~L~Ls~N~l~~-l~~~~~~   98 (290)
T 1p9a_G           30 PKDTTILHLSENLLY----TFSLATLMPYTRLTQLNLDRAELTK-LQV-----DGTLPVLGTLDLSHNQLQS-LPLLGQT   98 (290)
T ss_dssp             CTTCCEEECTTSCCS----EEEGGGGTTCTTCCEEECTTSCCCE-EEC-----CSCCTTCCEEECCSSCCSS-CCCCTTT
T ss_pred             CCCCCEEEcCCCcCC----ccCHHHhhcCCCCCEEECCCCccCc-ccC-----CCCCCcCCEEECCCCcCCc-Cchhhcc
Confidence            357889999999887    5667788899999999999999876 333     3678899999999999875 5667778


Q ss_pred             CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc
Q 045865           99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE  178 (225)
Q Consensus        99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  178 (225)
                      +++|++|++++|.+. .++...+..+++|+.|++++|.+....+..+.. +++|+.|++++|.++ ..+...+..+++|+
T Consensus        99 l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~  175 (290)
T 1p9a_G           99 LPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTP-TPKLEKLSLANNNLT-ELPAGLLNGLENLD  175 (290)
T ss_dssp             CTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT-CTTCCEEECTTSCCS-CCCTTTTTTCTTCC
T ss_pred             CCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhccc-ccCCCEEECCCCcCC-ccCHHHhcCcCCCC
Confidence            899999999999987 555447888899999999999887544444555 889999999999988 44544788899999


Q ss_pred             EEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCC
Q 045865          179 HFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGT  216 (225)
Q Consensus       179 ~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~  216 (225)
                      .|++++|++   ..+|..+.. +++|+.+++.+|++.-
T Consensus       176 ~L~L~~N~l---~~ip~~~~~-~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          176 TLLLQENSL---YTIPKGFFG-SHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             EEECCSSCC---CCCCTTTTT-TCCCSEEECCSCCBCC
T ss_pred             EEECCCCcC---CccChhhcc-cccCCeEEeCCCCccC
Confidence            999999976   366777777 8889999999998864

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.85  E-value=4.3e-21  Score=158.63  Aligned_cols=87  Identities=28%  Similarity=0.393  Sum_probs=41.7

Q ss_pred             ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHh-hhcC
Q 045865           21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSS-LTHL   99 (225)
Q Consensus        21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~-l~~l   99 (225)
                      ++++|++++|++.    .+.+..+.++++|++|++++|.+.+..+..  ..+..+++|++|++++|.+.+..|.. +..+
T Consensus        80 ~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l  153 (455)
T 3v47_A           80 SLIILKLDYNQFL----QLETGAFNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQPASFFLNM  153 (455)
T ss_dssp             TCCEEECTTCTTC----EECTTTTTTCTTCCEEECTTSCCBTHHHHS--STTTTCTTCCEEECCSSBCCSCCCCGGGGGC
T ss_pred             cCCEEeCCCCccC----ccChhhccCcccCCEEeCCCCCCCccccCc--ccccCcccCCEEECCCCccCccCcccccCCC
Confidence            4444555554443    333344445555555555555544322210  01445555555555555555443333 4555


Q ss_pred             CCCCEEEcCCCCCC
Q 045865          100 SSLRSLNLLWNRLE  113 (225)
Q Consensus       100 ~~L~~L~l~~n~~~  113 (225)
                      ++|++|++++|.+.
T Consensus       154 ~~L~~L~L~~n~l~  167 (455)
T 3v47_A          154 RRFHVLDLTFNKVK  167 (455)
T ss_dssp             TTCCEEECTTCCBS
T ss_pred             CcccEEeCCCCccc
Confidence            56666666665554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.85  E-value=2.2e-21  Score=163.87  Aligned_cols=196  Identities=23%  Similarity=0.339  Sum_probs=163.4

Q ss_pred             ccCCCceeecCC-----------cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcC
Q 045865            7 CCQWERVECSNT-----------TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRL   75 (225)
Q Consensus         7 ~c~~~~~~~~~~-----------~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l   75 (225)
                      .|.|.++ |+..           ...+++|++++|.+.    .+.+..|.++++|++|++++|.+....+.    .|..+
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l   73 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKIT----YIGHGDLRACANLQVLILKSSRINTIEGD----AFYSL   73 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCC----EECSSTTSSCTTCCEEECTTSCCCEECTT----TTTTC
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccC----ccChhhhhcCCcccEEECCCCCcCccChh----hcccc
Confidence            4888887 6532           247999999999987    56677889999999999999999986665    58999


Q ss_pred             CCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCc-cchhhhccCCCCceeecCCCCCcHHHH-HHHHhhCCCCC
Q 045865           76 NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGS-IDVKELHNFTNLEYLTLESSSLHISLL-QSIASIFPSLK  153 (225)
Q Consensus        76 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~~L~  153 (225)
                      ++|++|++++|.+.+..+..+..+++|++|++++|.+... .+. .+..+++|+.|++++|...+..+ ..+.. +++|+
T Consensus        74 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~-l~~L~  151 (549)
T 2z81_A           74 GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAG-LTSLN  151 (549)
T ss_dssp             TTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTT-CCEEE
T ss_pred             ccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhc-ccccC
Confidence            9999999999999998888899999999999999998742 333 78889999999999998433443 45666 99999


Q ss_pred             EEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCc
Q 045865          154 NLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTN  217 (225)
Q Consensus       154 ~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~  217 (225)
                      +|++++|.+++..+. .+..+++|+.++++.|.+   ..++..+...+++|+.|++++|.+++.
T Consensus       152 ~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~---~~~~~~~~~~l~~L~~L~L~~n~l~~~  211 (549)
T 2z81_A          152 ELEIKALSLRNYQSQ-SLKSIRDIHHLTLHLSES---AFLLEIFADILSSVRYLELRDTNLARF  211 (549)
T ss_dssp             EEEEEETTCCEECTT-TTTTCSEEEEEEEECSBS---TTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred             eeeccCCcccccChh-hhhccccCceEecccCcc---cccchhhHhhcccccEEEccCCccccc
Confidence            999999999877777 899999999999999965   345555443389999999999999874

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.85  E-value=3.8e-21  Score=156.13  Aligned_cols=135  Identities=20%  Similarity=0.193  Sum_probs=101.0

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL   99 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l   99 (225)
                      ..++.++++++.+.    .+++..+..+++|++|++++|.+....+.    .+..+++|++|++++|.+....+..+..+
T Consensus        45 ~~l~~l~l~~~~l~----~l~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  116 (390)
T 3o6n_A           45 NNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNV  116 (390)
T ss_dssp             CCCSEEEEESCEES----EECTHHHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCceEEEecCCchh----hCChhHhcccccCcEEECCCCcccccChh----hccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence            46677888888776    66777778888888888888888765444    47778888888888888877667777788


Q ss_pred             CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEecccccccc
Q 045865          100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNG  164 (225)
Q Consensus       100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  164 (225)
                      ++|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+++
T Consensus       117 ~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          117 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA-TTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSS-CTTCCEEECCSSCCSB
T ss_pred             CCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccC-CCCCCEEECCCCcCCc
Confidence            88888888888876 555535677788888888888776544445555 7778888887777653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.85  E-value=4.7e-22  Score=156.37  Aligned_cols=185  Identities=24%  Similarity=0.257  Sum_probs=145.3

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL   99 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l   99 (225)
                      ..++.|++++|.+.    .++ ..+..+++|++|++++|.+....+..   .+..+++|++|++++|.+....+..+..+
T Consensus        78 ~~L~~L~Ls~n~i~----~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  149 (306)
T 2z66_A           78 TSLKYLDLSFNGVI----TMS-SNFLGLEQLEHLDFQHSNLKQMSEFS---VFLSLRNLIYLDISHTHTRVAFNGIFNGL  149 (306)
T ss_dssp             SCCCEEECCSCSEE----EEE-EEEETCTTCCEEECTTSEEESSTTTT---TTTTCTTCCEEECTTSCCEECSTTTTTTC
T ss_pred             cccCEEECCCCccc----cCh-hhcCCCCCCCEEECCCCcccccccch---hhhhccCCCEEECCCCcCCccchhhcccC
Confidence            34555666665554    222 23667888888888888887644311   47788999999999999887777888889


Q ss_pred             CCCCEEEcCCCCCCC-ccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc
Q 045865          100 SSLRSLNLLWNRLEG-SIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE  178 (225)
Q Consensus       100 ~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  178 (225)
                      ++|++|++++|.+.+ ..+. .+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+++..+. .+..+++|+
T Consensus       150 ~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~  226 (306)
T 2z66_A          150 SSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLSPTAFNS-LSSLQVLNMSHNNFFSLDTF-PYKCLNSLQ  226 (306)
T ss_dssp             TTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTSCCSBCCSG-GGTTCTTCC
T ss_pred             cCCCEEECCCCccccccchh-HHhhCcCCCEEECCCCCcCCcCHHHhcC-CCCCCEEECCCCccCccChh-hccCcccCC
Confidence            999999999998874 2444 7888999999999999998665667777 99999999999999865444 788999999


Q ss_pred             EEEccCCccccchhHHHHHhhcC-CCCcEEEccCCcCCCcc
Q 045865          179 HFDMRFARIALNTSFLQIIGESM-PSLKYLLLSYSTLGTNS  218 (225)
Q Consensus       179 ~l~l~~n~i~~~~~~~~~l~~~~-~~L~~L~l~~n~l~~~~  218 (225)
                      .|++++|++  .+..+..+.. + ++|+.|++++|++++..
T Consensus       227 ~L~L~~N~l--~~~~~~~~~~-~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          227 VLDYSLNHI--MTSKKQELQH-FPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             EEECTTSCC--CBCSSSSCCC-CCTTCCEEECTTCCEECSG
T ss_pred             EeECCCCCC--cccCHHHHHh-hhccCCEEEccCCCeeccc
Confidence            999999954  4555666776 7 49999999999998764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=7.6e-21  Score=145.50  Aligned_cols=190  Identities=22%  Similarity=0.240  Sum_probs=147.3

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH   98 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~   98 (225)
                      +..++.|++++|.+.    .+.+..+.++++|++|++++|.+....+.    .+..+++|++|++++|.++...+..+..
T Consensus        34 ~~~l~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~  105 (251)
T 3m19_A           34 PADTEKLDLQSTGLA----TLSDATFRGLTKLTWLNLDYNQLQTLSAG----VFDDLTELGTLGLANNQLASLPLGVFDH  105 (251)
T ss_dssp             CTTCCEEECTTSCCC----CCCTTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             CCCCCEEEccCCCcC----ccCHhHhcCcccCCEEECCCCcCCccCHh----HhccCCcCCEEECCCCcccccChhHhcc
Confidence            357899999999998    66777889999999999999999986665    5889999999999999999877788899


Q ss_pred             CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc
Q 045865           99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE  178 (225)
Q Consensus        99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  178 (225)
                      +++|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+++..+. .+..+++|+
T Consensus       106 l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~  182 (251)
T 3m19_A          106 LTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK-LTNLQTLSLSTNQLQSVPHG-AFDRLGKLQ  182 (251)
T ss_dssp             CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCSCCCTT-TTTTCTTCC
T ss_pred             cCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCc-CcCCCEEECCCCcCCccCHH-HHhCCCCCC
Confidence            999999999999998 556546788999999999999998554445666 89999999999999855444 889999999


Q ss_pred             EEEccCCccccc-h---hHHHHHhhcCCCCcEEEccCCcCCCccchh
Q 045865          179 HFDMRFARIALN-T---SFLQIIGESMPSLKYLLLSYSTLGTNSSRI  221 (225)
Q Consensus       179 ~l~l~~n~i~~~-~---~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~  221 (225)
                      .+++++|++... .   .++.++.. . ..+..+..++.+.+.++..
T Consensus       183 ~L~l~~N~~~c~~~~~~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~  227 (251)
T 3m19_A          183 TITLFGNQFDCSRCEILYLSQWIRE-N-SNKVKDGTGQNLHESPDGV  227 (251)
T ss_dssp             EEECCSCCBCTTSTTHHHHHHHHHH-S-GGGBCC-------CCGGGC
T ss_pred             EEEeeCCceeCCccccHHHHHHHHh-c-ccceeeccCcccccCCCcC
Confidence            999999976433 1   24444443 1 2233344555555544443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.84  E-value=3.4e-21  Score=152.04  Aligned_cols=184  Identities=20%  Similarity=0.222  Sum_probs=139.8

Q ss_pred             cCceEEeeccccccccchhHHhhhhh-cCCCCccEEEccCCcccCcchhhHHHHHhcC-----CCCCEEECCCCCCChhh
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLF-TPFQQLESLDLTQNKIAGCVENEGIERLSRL-----NNLKMLNLSGNSFNNSI   92 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l-----~~L~~L~l~~~~l~~~~   92 (225)
                      ..++++|++++|++..   .++...+ ..+++|++|++++|.+.+. |.    .+..+     ++|++|++++|.+.+..
T Consensus        94 l~~L~~L~L~~n~l~~---~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~----~~~~l~~~~~~~L~~L~L~~N~l~~~~  165 (312)
T 1wwl_A           94 ISGLQELTLENLEVTG---TAPPPLLEATGPDLNILNLRNVSWATR-DA----WLAELQQWLKPGLKVLSIAQAHSLNFS  165 (312)
T ss_dssp             TSCCCEEEEEEEBCBS---CCCCCSSSCCSCCCSEEEEESCBCSSS-SS----HHHHHHTTCCTTCCEEEEESCSCCCCC
T ss_pred             cCCccEEEccCCcccc---hhHHHHHHhcCCCccEEEccCCCCcch-hH----HHHHHHHhhcCCCcEEEeeCCCCccch
Confidence            4578899999998863   2333332 7889999999999999885 54    34544     89999999999998877


Q ss_pred             HHhhhcCCCCCEEEcCCCCCCCcc--chhhh--ccCCCCceeecCCCCCcH--HHHHHHHhhCCCCCEEecccccccccc
Q 045865           93 LSSLTHLSSLRSLNLLWNRLEGSI--DVKEL--HNFTNLEYLTLESSSLHI--SLLQSIASIFPSLKNLSMSFCEVNGVV  166 (225)
Q Consensus        93 ~~~l~~l~~L~~L~l~~n~~~~~~--~~~~~--~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~~  166 (225)
                      +..+..+++|++|++++|.+.+..  +. .+  ..+++|+.|++++|.+..  ..+..+...+++|+.|++++|.+++..
T Consensus       166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  244 (312)
T 1wwl_A          166 CEQVRVFPALSTLDLSDNPELGERGLIS-ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA  244 (312)
T ss_dssp             TTTCCCCSSCCEEECCSCTTCHHHHHHH-HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred             HHHhccCCCCCEEECCCCCcCcchHHHH-HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence            788899999999999999876432  22 33  678899999999999872  333343333899999999999998766


Q ss_pred             ccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCc
Q 045865          167 RGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTN  217 (225)
Q Consensus       167 ~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~  217 (225)
                      +...+..+++|+.|++++|++.   .+|..+.   ++|+.|++++|+|++.
T Consensus       245 ~~~~~~~l~~L~~L~Ls~N~l~---~ip~~~~---~~L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          245 GAPSCDWPSQLNSLNLSFTGLK---QVPKGLP---AKLSVLDLSYNRLDRN  289 (312)
T ss_dssp             CCSCCCCCTTCCEEECTTSCCS---SCCSSCC---SEEEEEECCSSCCCSC
T ss_pred             chhhhhhcCCCCEEECCCCccC---hhhhhcc---CCceEEECCCCCCCCC
Confidence            4436677889999999999662   4554432   5788889999988876

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.84  E-value=4.6e-21  Score=148.63  Aligned_cols=161  Identities=22%  Similarity=0.228  Sum_probs=118.5

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH   98 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~   98 (225)
                      ...++.|++++|.+.    .+.+..+.++++|++|++++|.+....+.    .+..+++|++|++++|.+....+..+..
T Consensus        51 l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~  122 (276)
T 2z62_A           51 FPELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQKLVAVETNLASLENFPIGH  122 (276)
T ss_dssp             CTTCSEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTSCCCCSTTCCCTT
T ss_pred             ccCCcEEECCCCcCC----ccCHHHccCCcCCCEEECCCCccCccChh----hhcCCccccEEECCCCCccccCchhccc
Confidence            457888899988887    56666788888888899888888775544    5778888888888888887755556777


Q ss_pred             CCCCCEEEcCCCCCCCc-cchhhhccCCCCceeecCCCCCcHHHH---HHHHh-----------------------hCCC
Q 045865           99 LSSLRSLNLLWNRLEGS-IDVKELHNFTNLEYLTLESSSLHISLL---QSIAS-----------------------IFPS  151 (225)
Q Consensus        99 l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~---~~~~~-----------------------~~~~  151 (225)
                      +++|++|++++|.+... +|. .+..+++|+.|++++|.+.+..+   ..+..                       ...+
T Consensus       123 l~~L~~L~l~~n~l~~~~l~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~  201 (276)
T 2z62_A          123 LKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR  201 (276)
T ss_dssp             CTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCC
T ss_pred             CCCCCEEECcCCccceecCch-hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCc
Confidence            88888888888887632 344 77778888888888887653221   11221                       0226


Q ss_pred             CCEEeccccccccccccCCCCCCCCCcEEEccCCcccc
Q 045865          152 LKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIAL  189 (225)
Q Consensus       152 L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~  189 (225)
                      |+.|++++|.+++. +...+..+++|+.+++++|++..
T Consensus       202 L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          202 LKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             EEEEECCSSCCSCC-CTTTTTTCCSCCEEECCSSCBCC
T ss_pred             ccEEECCCCceeec-CHhHhcccccccEEEccCCcccc
Confidence            77888888888744 44378899999999999997643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.84  E-value=1.2e-21  Score=162.94  Aligned_cols=189  Identities=20%  Similarity=0.216  Sum_probs=113.4

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL   99 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l   99 (225)
                      ..++.|++++|++.    .+.+..|.++++|++|++++|.+....+.    .|..+++|++|++++|.+....+..+..+
T Consensus        32 ~~l~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  103 (477)
T 2id5_A           32 TETRLLDLGKNRIK----TLNQDEFASFPHLEELELNENIVSAVEPG----AFNNLFNLRTLGLRSNRLKLIPLGVFTGL  103 (477)
T ss_dssp             TTCSEEECCSSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCSCCTTSSTTC
T ss_pred             CCCcEEECCCCccc----eECHhHccCCCCCCEEECCCCccCEeChh----hhhCCccCCEEECCCCcCCccCcccccCC
Confidence            46788888888877    55666777788888888888777765555    46777777777777777766555556666


Q ss_pred             CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCc------------------------HHHHHHHHhhCCCCCEE
Q 045865          100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLH------------------------ISLLQSIASIFPSLKNL  155 (225)
Q Consensus       100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~------------------------~~~~~~~~~~~~~L~~L  155 (225)
                      ++|++|++++|.+....+ ..+..+++|+.|++.+|.+.                        ...+..+.. +++|+.|
T Consensus       104 ~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L  181 (477)
T 2id5_A          104 SNLTKLDISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH-LHGLIVL  181 (477)
T ss_dssp             TTCCEEECTTSCCCEECT-TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTT-CTTCCEE
T ss_pred             CCCCEEECCCCccccCCh-hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcc-cCCCcEE
Confidence            777777777766652222 24445555555555555443                        322333444 5555555


Q ss_pred             eccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865          156 SMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL  222 (225)
Q Consensus       156 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~  222 (225)
                      ++++|.+.+..+. .+..+++|+.|++++|+  ..+.++..... ..+|+.|++++|.+++..+..+
T Consensus       182 ~l~~n~i~~~~~~-~~~~l~~L~~L~l~~~~--~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~  244 (477)
T 2id5_A          182 RLRHLNINAIRDY-SFKRLYRLKVLEISHWP--YLDTMTPNCLY-GLNLTSLSITHCNLTAVPYLAV  244 (477)
T ss_dssp             EEESCCCCEECTT-CSCSCTTCCEEEEECCT--TCCEECTTTTT-TCCCSEEEEESSCCCSCCHHHH
T ss_pred             eCCCCcCcEeChh-hcccCcccceeeCCCCc--cccccCccccc-CccccEEECcCCcccccCHHHh
Confidence            5555555433222 55566666666666652  22333433333 4467777777777775544433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.84  E-value=4.6e-21  Score=152.46  Aligned_cols=202  Identities=18%  Similarity=0.278  Sum_probs=127.7

Q ss_pred             cCCCceeecCC---------cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCC
Q 045865            8 CQWERVECSNT---------TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNL   78 (225)
Q Consensus         8 c~~~~~~~~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L   78 (225)
                      |.+..+.|...         ...++.|++++|.+.    .+++..+.++++|++|++++|.+....+.    .+..+++|
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L  104 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDIS----ELRKDDFKGLQHLYALVLVNNKISKIHEK----AFSPLRKL  104 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECGG----GSTTCTTC
T ss_pred             ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCC----ccCHhHhhCCCCCcEEECCCCccCccCHh----HhhCcCCC
Confidence            56666666542         247889999999887    56667788899999999999988876566    57888888


Q ss_pred             CEEECCCCCCChhh---------------------HHhhhcCCCCCEEEcCCCCCCC-ccchhhhccC------------
Q 045865           79 KMLNLSGNSFNNSI---------------------LSSLTHLSSLRSLNLLWNRLEG-SIDVKELHNF------------  124 (225)
Q Consensus        79 ~~L~l~~~~l~~~~---------------------~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~l------------  124 (225)
                      ++|++++|.+....                     +..+..+++|+.|++++|.+.. ......+..+            
T Consensus       105 ~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l  184 (332)
T 2ft3_A          105 QKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL  184 (332)
T ss_dssp             CEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBC
T ss_pred             CEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCC
Confidence            88888888776421                     1223444455555555554421 0110011111            


Q ss_pred             --------CCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHH
Q 045865          125 --------TNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQI  196 (225)
Q Consensus       125 --------~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~  196 (225)
                              ++|+.|++++|.+.+..+..+.. +++|+.|++++|.+++..+. .+..+++|+.|++++|++   ..+|..
T Consensus       185 ~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~-l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l---~~lp~~  259 (332)
T 2ft3_A          185 TGIPKDLPETLNELHLDHNKIQAIELEDLLR-YSKLYRLGLGHNQIRMIENG-SLSFLPTLRELHLDNNKL---SRVPAG  259 (332)
T ss_dssp             SSCCSSSCSSCSCCBCCSSCCCCCCTTSSTT-CTTCSCCBCCSSCCCCCCTT-GGGGCTTCCEEECCSSCC---CBCCTT
T ss_pred             CccCccccCCCCEEECCCCcCCccCHHHhcC-CCCCCEEECCCCcCCcCChh-HhhCCCCCCEEECCCCcC---eecChh
Confidence                    23444444444444333334444 66777777777776644333 566777788888888855   255666


Q ss_pred             HhhcCCCCcEEEccCCcCCCccchhhc
Q 045865          197 IGESMPSLKYLLLSYSTLGTNSSRILH  223 (225)
Q Consensus       197 l~~~~~~L~~L~l~~n~l~~~~~~~~~  223 (225)
                      +.. +++|+.|++++|++++..+..|+
T Consensus       260 l~~-l~~L~~L~l~~N~l~~~~~~~~~  285 (332)
T 2ft3_A          260 LPD-LKLLQVVYLHTNNITKVGVNDFC  285 (332)
T ss_dssp             GGG-CTTCCEEECCSSCCCBCCTTSSS
T ss_pred             hhc-CccCCEEECCCCCCCccChhHcc
Confidence            777 88888888888888876665553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.84  E-value=8e-21  Score=158.03  Aligned_cols=189  Identities=22%  Similarity=0.246  Sum_probs=128.6

Q ss_pred             ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCC
Q 045865           21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS  100 (225)
Q Consensus        21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~  100 (225)
                      +++.|++++|.+.    .++...|.++++|++|++++|.+....+.    .+..+++|++|++++|.+....+..+..++
T Consensus        81 ~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  152 (477)
T 2id5_A           81 NLRTLGLRSNRLK----LIPLGVFTGLSNLTKLDISENKIVILLDY----MFQDLYNLKSLEVGDNDLVYISHRAFSGLN  152 (477)
T ss_dssp             TCCEEECCSSCCC----SCCTTSSTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEEECCTTCCEECTTSSTTCT
T ss_pred             cCCEEECCCCcCC----ccCcccccCCCCCCEEECCCCccccCChh----HccccccCCEEECCCCccceeChhhccCCC
Confidence            4444444444444    33444445555555555555555443333    355556666666666666555555666667


Q ss_pred             CCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEE
Q 045865          101 SLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHF  180 (225)
Q Consensus       101 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l  180 (225)
                      +|+.|++++|.+. .++...+..+++|+.|++.+|.+....+..+.. +++|+.|++++|...+..+. ......+|+.|
T Consensus       153 ~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L  229 (477)
T 2id5_A          153 SLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR-LYRLKVLEISHWPYLDTMTP-NCLYGLNLTSL  229 (477)
T ss_dssp             TCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCS-CTTCCEEEEECCTTCCEECT-TTTTTCCCSEE
T ss_pred             CCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhccc-CcccceeeCCCCccccccCc-ccccCccccEE
Confidence            7777777777765 445446778889999999999887554555666 89999999999987777776 45555689999


Q ss_pred             EccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhhc
Q 045865          181 DMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRILH  223 (225)
Q Consensus       181 ~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~~  223 (225)
                      ++++|++  ...-+..+.. +++|+.|++++|.+++..+..|.
T Consensus       230 ~l~~n~l--~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~  269 (477)
T 2id5_A          230 SITHCNL--TAVPYLAVRH-LVYLRFLNLSYNPISTIEGSMLH  269 (477)
T ss_dssp             EEESSCC--CSCCHHHHTT-CTTCCEEECCSSCCCEECTTSCT
T ss_pred             ECcCCcc--cccCHHHhcC-ccccCeeECCCCcCCccChhhcc
Confidence            9999965  3322356777 99999999999999987776553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.84  E-value=9.1e-21  Score=150.59  Aligned_cols=190  Identities=15%  Similarity=0.221  Sum_probs=122.5

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhH------------------HHHHhcCCCCCE
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEG------------------IERLSRLNNLKM   80 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~------------------~~~~~~l~~L~~   80 (225)
                      ...+++|++++|.+.    .+.+..+.++++|++|++++|.+.. .|...                  ...+..+++|++
T Consensus        75 l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  149 (330)
T 1xku_A           75 LKNLHTLILINNKIS----KISPGAFAPLVKLERLYLSKNQLKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV  149 (330)
T ss_dssp             CTTCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSSCCSB-CCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCE
T ss_pred             CCCCCEEECCCCcCC----eeCHHHhcCCCCCCEEECCCCcCCc-cChhhcccccEEECCCCcccccCHhHhcCCccccE
Confidence            357888899988887    5556677888888888888887764 33210                  012344444444


Q ss_pred             EECCCCCCCh--hhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEecc
Q 045865           81 LNLSGNSFNN--SILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMS  158 (225)
Q Consensus        81 L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~  158 (225)
                      |++++|.+..  ..+..+..+++|++|++++|.+. .+|. .+  .++|+.|++++|.+.+..+..+.. +++|+.|+++
T Consensus       150 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~-~~--~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls  224 (330)
T 1xku_A          150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ-GL--PPSLTELHLDGNKITKVDAASLKG-LNNLAKLGLS  224 (330)
T ss_dssp             EECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCS-SC--CTTCSEEECTTSCCCEECTGGGTT-CTTCCEEECC
T ss_pred             EECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCc-cc--cccCCEEECCCCcCCccCHHHhcC-CCCCCEEECC
Confidence            4444444432  22334444455555555555443 2332 11  156667777777766544556666 8888888888


Q ss_pred             ccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhhc
Q 045865          159 FCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRILH  223 (225)
Q Consensus       159 ~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~~  223 (225)
                      +|.+++..+. .+..+++|+.|++++|++   ..+|..+.. +++|+.|++++|++++..+..|+
T Consensus       225 ~n~l~~~~~~-~~~~l~~L~~L~L~~N~l---~~lp~~l~~-l~~L~~L~l~~N~i~~~~~~~f~  284 (330)
T 1xku_A          225 FNSISAVDNG-SLANTPHLRELHLNNNKL---VKVPGGLAD-HKYIQVVYLHNNNISAIGSNDFC  284 (330)
T ss_dssp             SSCCCEECTT-TGGGSTTCCEEECCSSCC---SSCCTTTTT-CSSCCEEECCSSCCCCCCTTSSS
T ss_pred             CCcCceeChh-hccCCCCCCEEECCCCcC---ccCChhhcc-CCCcCEEECCCCcCCccChhhcC
Confidence            8888755444 677888888899888866   356666777 88899999999998877766653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.84  E-value=1.7e-21  Score=156.28  Aligned_cols=137  Identities=23%  Similarity=0.269  Sum_probs=83.0

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhH-Hhhh
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSIL-SSLT   97 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~   97 (225)
                      ..+++.|++++|.+.    .+.+..+.++++|++|++++|.+....+.    .+..+++|++|++++|.+..... ..+.
T Consensus        75 l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~  146 (353)
T 2z80_A           75 CVNLQALVLTSNGIN----TIEEDSFSSLGSLEHLDLSYNYLSNLSSS----WFKPLSSLTFLNLLGNPYKTLGETSLFS  146 (353)
T ss_dssp             CTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCSSCCHH----HHTTCTTCSEEECTTCCCSSSCSSCSCT
T ss_pred             CCCCCEEECCCCccC----ccCHhhcCCCCCCCEEECCCCcCCcCCHh----HhCCCccCCEEECCCCCCcccCchhhhc
Confidence            456778888888776    45566677778888888888877764333    46777888888888777765333 3566


Q ss_pred             cCCCCCEEEcCCCCCCCccchhhhccC------------------------CCCceeecCCCCCcHHHHHHHHhhCCCCC
Q 045865           98 HLSSLRSLNLLWNRLEGSIDVKELHNF------------------------TNLEYLTLESSSLHISLLQSIASIFPSLK  153 (225)
Q Consensus        98 ~l~~L~~L~l~~n~~~~~~~~~~~~~l------------------------~~L~~l~l~~~~~~~~~~~~~~~~~~~L~  153 (225)
                      .+++|++|++++|.....++...+..+                        ++|+.|++++|.+.. .+..+...+++|+
T Consensus       147 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~  225 (353)
T 2z80_A          147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVE  225 (353)
T ss_dssp             TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEE
T ss_pred             cCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc-chhhhhhhccccc
Confidence            667777777776632223332244444                        445555555555432 2322222266666


Q ss_pred             EEecccccccc
Q 045865          154 NLSMSFCEVNG  164 (225)
Q Consensus       154 ~L~l~~n~~~~  164 (225)
                      .|++++|.+++
T Consensus       226 ~L~L~~n~l~~  236 (353)
T 2z80_A          226 CLELRDTDLDT  236 (353)
T ss_dssp             EEEEESCBCTT
T ss_pred             EEECCCCcccc
Confidence            66666666653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.84  E-value=4.6e-21  Score=163.78  Aligned_cols=67  Identities=22%  Similarity=0.480  Sum_probs=30.7

Q ss_pred             CCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccch
Q 045865          149 FPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSR  220 (225)
Q Consensus       149 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~  220 (225)
                      +++|+.|++++|.+++..+. .+.++++|+.|++++|+  +.+..|..+.. ++.| .|++++|++++.+|.
T Consensus       475 l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~--l~~~~~~~l~~-l~~L-~L~L~~N~l~~~~~~  541 (606)
T 3t6q_A          475 LGRLEILVLSFCDLSSIDQH-AFTSLKMMNHVDLSHNR--LTSSSIEALSH-LKGI-YLNLASNHISIILPS  541 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSC--CCGGGGGGGTT-CCSC-EEECCSSCCCCCCGG
T ss_pred             CCCccEEECCCCccCccChh-hhccccCCCEEECCCCc--cCcCChhHhCc-cccc-EEECcCCcccccCHh
Confidence            44444444444444433233 44445555555555552  23333444444 5555 555555555544444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.84  E-value=1.6e-20  Score=152.45  Aligned_cols=62  Identities=24%  Similarity=0.368  Sum_probs=30.5

Q ss_pred             CCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCC
Q 045865          149 FPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLG  215 (225)
Q Consensus       149 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~  215 (225)
                      +++|+.|++++|.+++..+. .+..+++|+.|++++|++.   .++..+.. +++|+.|++++|+++
T Consensus       247 l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~---~~~~~~~~-l~~L~~L~L~~n~l~  308 (390)
T 3o6n_A          247 YPGLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNNRLV---ALNLYGQP-IPTLKVLDLSHNHLL  308 (390)
T ss_dssp             CTTCSEEECCSSCCCEEESG-GGTTCSSCCEEECCSSCCC---EEECSSSC-CTTCCEEECCSSCCC
T ss_pred             CCCccEEECCCCcCCCcChh-HccccccCCEEECCCCcCc---ccCcccCC-CCCCCEEECCCCcce
Confidence            55666666666665544343 5555555555555555431   11222223 444555555555444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.83  E-value=2.2e-20  Score=148.35  Aligned_cols=197  Identities=19%  Similarity=0.259  Sum_probs=125.5

Q ss_pred             cCCCceeecCC---------cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCC
Q 045865            8 CQWERVECSNT---------TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNL   78 (225)
Q Consensus         8 c~~~~~~~~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L   78 (225)
                      |.+..+.|...         ...++.|++++|.+.    .+++..+.++++|++|++++|.+....+.    .+..+++|
T Consensus        31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L  102 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKIT----EIKDGDFKNLKNLHTLILINNKISKISPG----AFAPLVKL  102 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSSCCCCBCTT----TTTTCTTC
T ss_pred             CCCeEEEecCCCccccCccCCCCCeEEECCCCcCC----EeChhhhccCCCCCEEECCCCcCCeeCHH----HhcCCCCC
Confidence            45555666531         357889999999987    56777889999999999999999886676    58899999


Q ss_pred             CEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcH--HHHHHHHhhCCCCC---
Q 045865           79 KMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHI--SLLQSIASIFPSLK---  153 (225)
Q Consensus        79 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~~L~---  153 (225)
                      ++|++++|.++. .|..+.  ++|++|++++|.+. .++...+..+++|+.|++++|.+..  ..+..+.. +++|+   
T Consensus       103 ~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~L~~L~  177 (330)
T 1xku_A          103 ERLYLSKNQLKE-LPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG-MKKLSYIR  177 (330)
T ss_dssp             CEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG-CTTCCEEE
T ss_pred             CEEECCCCcCCc-cChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccC-CCCcCEEE
Confidence            999999988764 222221  45666666666655 3333345555566666666555532  12233333 44444   


Q ss_pred             ------------------EEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCC
Q 045865          154 ------------------NLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLG  215 (225)
Q Consensus       154 ------------------~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~  215 (225)
                                        .|++++|.+++..+. .+..+++|+.|++++|++  .+..+..+.. +++|+.|++++|+++
T Consensus       178 l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~-l~~L~~L~L~~N~l~  253 (330)
T 1xku_A          178 IADTNITTIPQGLPPSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSI--SAVDNGSLAN-TPHLRELHLNNNKLV  253 (330)
T ss_dssp             CCSSCCCSCCSSCCTTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCC--CEECTTTGGG-STTCCEEECCSSCCS
T ss_pred             CCCCccccCCccccccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcC--ceeChhhccC-CCCCCEEECCCCcCc
Confidence                              455555555433333 566667777777777744  2222334555 777777777777777


Q ss_pred             Cccchhh
Q 045865          216 TNSSRIL  222 (225)
Q Consensus       216 ~~~~~~~  222 (225)
                       .+|..+
T Consensus       254 -~lp~~l  259 (330)
T 1xku_A          254 -KVPGGL  259 (330)
T ss_dssp             -SCCTTT
T ss_pred             -cCChhh
Confidence             444443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.83  E-value=1.4e-20  Score=160.82  Aligned_cols=186  Identities=27%  Similarity=0.328  Sum_probs=114.3

Q ss_pred             ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCC
Q 045865           21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS  100 (225)
Q Consensus        21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~  100 (225)
                      .++.+++++|.+.    .+++..|..+++|++|++++|.+.. .|.    .+..+++|++|++++|.+....+..+..++
T Consensus       255 ~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~-lp~----~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~  325 (606)
T 3t6q_A          255 SVESINLQKHYFF----NISSNTFHCFSGLQELDLTATHLSE-LPS----GLVGLSTLKKLVLSANKFENLCQISASNFP  325 (606)
T ss_dssp             EEEEEECTTCCCS----SCCTTTTTTCTTCSEEECTTSCCSC-CCS----SCCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred             ceeEEEeecCccC----ccCHHHhccccCCCEEeccCCccCC-CCh----hhcccccCCEEECccCCcCcCchhhhhccC
Confidence            6788888888876    5666777888888888888888775 555    467788888888888888776677777777


Q ss_pred             CCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHH--HHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc
Q 045865          101 SLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISL--LQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE  178 (225)
Q Consensus       101 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  178 (225)
                      +|++|++++|.+...++...+..+++|+.|++++|.+.+..  +..+.. +++|+.|++++|.+.+..+. .+.++++|+
T Consensus       326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~  403 (606)
T 3t6q_A          326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN-LSHLQSLNLSYNEPLSLKTE-AFKECPQLE  403 (606)
T ss_dssp             TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTT-CTTCCEEECCSCSCEEECTT-TTTTCTTCS
T ss_pred             cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhccc-CCCCCEEECCCCcCCcCCHH-HhcCCccCC
Confidence            77777777777654555434566666666666666655332  333444 55666666666655533333 455555555


Q ss_pred             EEEccCCccccchhHHH-HHhhcCCCCcEEEccCCcCCCccch
Q 045865          179 HFDMRFARIALNTSFLQ-IIGESMPSLKYLLLSYSTLGTNSSR  220 (225)
Q Consensus       179 ~l~l~~n~i~~~~~~~~-~l~~~~~~L~~L~l~~n~l~~~~~~  220 (225)
                      .+++++|++  .+..+. .+.. +++|+.|++++|.+++..|.
T Consensus       404 ~L~l~~n~l--~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~  443 (606)
T 3t6q_A          404 LLDLAFTRL--KVKDAQSPFQN-LHLLKVLNLSHSLLDISSEQ  443 (606)
T ss_dssp             EEECTTCCE--ECCTTCCTTTT-CTTCCEEECTTCCCBTTCTT
T ss_pred             eEECCCCcC--CCcccchhhhC-cccCCEEECCCCccCCcCHH
Confidence            555555532  111111 1333 44444444444444444443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=7.3e-20  Score=148.40  Aligned_cols=196  Identities=18%  Similarity=0.271  Sum_probs=138.2

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcC---------CCCCEEECCCCCCC
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRL---------NNLKMLNLSGNSFN   89 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l---------~~L~~L~l~~~~l~   89 (225)
                      ..+++.|++++|.+...+....+..+..+++|++|++++|.+....+......+..+         ++|++|++++|.++
T Consensus        93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~  172 (386)
T 2ca6_A           93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE  172 (386)
T ss_dssp             CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence            357778888888777544445555667788888888888877643333222234444         78888888888886


Q ss_pred             -hhhH---HhhhcCCCCCEEEcCCCCCCCc----cchhhhccCCCCceeecCCCCCc----HHHHHHHHhhCCCCCEEec
Q 045865           90 -NSIL---SSLTHLSSLRSLNLLWNRLEGS----IDVKELHNFTNLEYLTLESSSLH----ISLLQSIASIFPSLKNLSM  157 (225)
Q Consensus        90 -~~~~---~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~l~l~~~~~~----~~~~~~~~~~~~~L~~L~l  157 (225)
                       ...+   ..+..+++|++|++++|.+...    +....+..+++|+.|++++|.+.    ..++..+.. +++|+.|++
T Consensus       173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~-~~~L~~L~L  251 (386)
T 2ca6_A          173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS-WPNLRELGL  251 (386)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG-CTTCCEEEC
T ss_pred             cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc-CCCcCEEEC
Confidence             2233   4566778888888888877621    11115667788999999998886    345666666 889999999


Q ss_pred             cccccccc----cccCCC--CCCCCCcEEEccCCccccch----hHHHHH-hhcCCCCcEEEccCCcCCCccc
Q 045865          158 SFCEVNGV----VRGQGF--PHFKSLEHFDMRFARIALNT----SFLQII-GESMPSLKYLLLSYSTLGTNSS  219 (225)
Q Consensus       158 ~~n~~~~~----~~~~~~--~~~~~L~~l~l~~n~i~~~~----~~~~~l-~~~~~~L~~L~l~~n~l~~~~~  219 (225)
                      ++|.+++.    ++. .+  +.+++|+.|++++|++  ..    .++..+ .. +++|+.|++++|++++..+
T Consensus       252 ~~n~i~~~~~~~l~~-~l~~~~~~~L~~L~L~~n~i--~~~g~~~l~~~l~~~-l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          252 NDCLLSARGAAAVVD-AFSKLENIGLQTLRLQYNEI--ELDAVRTLKTVIDEK-MPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             TTCCCCHHHHHHHHH-HHHTCSSCCCCEEECCSSCC--BHHHHHHHHHHHHHH-CTTCCEEECTTSBSCTTSH
T ss_pred             CCCCCchhhHHHHHH-HHhhccCCCeEEEECcCCcC--CHHHHHHHHHHHHhc-CCCceEEEccCCcCCcchh
Confidence            99988754    233 34  4488899999999955  34    477777 55 8999999999999998774

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.83  E-value=2.3e-21  Score=154.08  Aligned_cols=180  Identities=19%  Similarity=0.222  Sum_probs=142.9

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHh---------cCCCCCEEECCCCCCCh
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLS---------RLNNLKMLNLSGNSFNN   90 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~---------~l~~L~~L~l~~~~l~~   90 (225)
                      .+++.|++++|.+.    .+ +..+.++++|++|++++|.+.+..|.    .+.         .+++|++|++++|.++ 
T Consensus       127 ~~L~~L~Ls~n~l~----~l-p~~l~~l~~L~~L~L~~n~~~~~~p~----~~~~~~~~~~~~~l~~L~~L~L~~n~l~-  196 (328)
T 4fcg_A          127 AGLETLTLARNPLR----AL-PASIASLNRLRELSIRACPELTELPE----PLASTDASGEHQGLVNLQSLRLEWTGIR-  196 (328)
T ss_dssp             TTCSEEEEESCCCC----CC-CGGGGGCTTCCEEEEEEETTCCCCCS----CSEEEC-CCCEEESTTCCEEEEEEECCC-
T ss_pred             CCCCEEECCCCccc----cC-cHHHhcCcCCCEEECCCCCCccccCh----hHhhccchhhhccCCCCCEEECcCCCcC-
Confidence            45666666666654    23 23456667777777776655554554    232         3777777777777777 


Q ss_pred             hhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCC
Q 045865           91 SILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQG  170 (225)
Q Consensus        91 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  170 (225)
                      .+|..+..+++|++|++++|.+. .++. .+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+.+..|. .
T Consensus       197 ~lp~~l~~l~~L~~L~L~~N~l~-~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-l~~L~~L~L~~n~~~~~~p~-~  272 (328)
T 4fcg_A          197 SLPASIANLQNLKSLKIRNSPLS-ALGP-AIHHLPKLEELDLRGCTALRNYPPIFGG-RAPLKRLILKDCSNLLTLPL-D  272 (328)
T ss_dssp             CCCGGGGGCTTCCEEEEESSCCC-CCCG-GGGGCTTCCEEECTTCTTCCBCCCCTTC-CCCCCEEECTTCTTCCBCCT-T
T ss_pred             cchHhhcCCCCCCEEEccCCCCC-cCch-hhccCCCCCEEECcCCcchhhhHHHhcC-CCCCCEEECCCCCchhhcch-h
Confidence            46777889999999999999998 5666 7889999999999999888777777777 99999999999998888887 7


Q ss_pred             CCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCC
Q 045865          171 FPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGT  216 (225)
Q Consensus       171 ~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~  216 (225)
                      +.++++|+.|++++|  ...+.+|..+++ +++|+.+++..+.+..
T Consensus       273 ~~~l~~L~~L~L~~n--~~~~~iP~~l~~-L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          273 IHRLTQLEKLDLRGC--VNLSRLPSLIAQ-LPANCIILVPPHLQAQ  315 (328)
T ss_dssp             GGGCTTCCEEECTTC--TTCCCCCGGGGG-SCTTCEEECCGGGSCC
T ss_pred             hhcCCCCCEEeCCCC--CchhhccHHHhh-ccCceEEeCCHHHHHH
Confidence            899999999999999  556788999999 9999999999887764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=1.4e-21  Score=148.45  Aligned_cols=186  Identities=11%  Similarity=0.157  Sum_probs=152.8

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCc-ccCcchhhHHHHHhcCCCCCEEECCC-CCCChhhHHhh
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNK-IAGCVENEGIERLSRLNNLKMLNLSG-NSFNNSILSSL   96 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~l   96 (225)
                      +..++.|++++|++.    .+++..|..+++|++|++++|. +....+.    .|..+++|++|++++ |.++...+..+
T Consensus        30 ~~~l~~L~l~~n~l~----~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~l~~~n~l~~i~~~~f  101 (239)
T 2xwt_C           30 PPSTQTLKLIETHLR----TIPSHAFSNLPNISRIYVSIDVTLQQLESH----SFYNLSKVTHIEIRNTRNLTYIDPDAL  101 (239)
T ss_dssp             CTTCCEEEEESCCCS----EECTTTTTTCTTCCEEEEECCSSCCEECTT----TEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred             CCcccEEEEeCCcce----EECHHHccCCCCCcEEeCCCCCCcceeCHh----HcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence            457899999999998    6777789999999999999997 8775444    588999999999998 99988777788


Q ss_pred             hcCCCCCEEEcCCCCCCCccchhhhccCCCCc---eeecCCC-CCcHHHHHHHHhhCCCCC-EEeccccccccccccCCC
Q 045865           97 THLSSLRSLNLLWNRLEGSIDVKELHNFTNLE---YLTLESS-SLHISLLQSIASIFPSLK-NLSMSFCEVNGVVRGQGF  171 (225)
Q Consensus        97 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~---~l~l~~~-~~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~  171 (225)
                      ..+++|++|++++|.+. .+|  .+..+.+|+   .|++++| .+....+..+.. +++|+ .|++++|.++ .++...+
T Consensus       102 ~~l~~L~~L~l~~n~l~-~lp--~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~-l~~L~~~L~l~~n~l~-~i~~~~~  176 (239)
T 2xwt_C          102 KELPLLKFLGIFNTGLK-MFP--DLTKVYSTDIFFILEITDNPYMTSIPVNAFQG-LCNETLTLKLYNNGFT-SVQGYAF  176 (239)
T ss_dssp             ECCTTCCEEEEEEECCC-SCC--CCTTCCBCCSEEEEEEESCTTCCEECTTTTTT-TBSSEEEEECCSCCCC-EECTTTT
T ss_pred             CCCCCCCEEeCCCCCCc-ccc--ccccccccccccEEECCCCcchhhcCcccccc-hhcceeEEEcCCCCCc-ccCHhhc
Confidence            89999999999999987 465  377777787   9999999 887544445666 89999 9999999998 6666456


Q ss_pred             CCCCCCcEEEccCCc-cccchhH-HHHHhhcC-CCCcEEEccCCcCCCccchhh
Q 045865          172 PHFKSLEHFDMRFAR-IALNTSF-LQIIGESM-PSLKYLLLSYSTLGTNSSRIL  222 (225)
Q Consensus       172 ~~~~~L~~l~l~~n~-i~~~~~~-~~~l~~~~-~~L~~L~l~~n~l~~~~~~~~  222 (225)
                      .. ++|+.+++++|+ +.   .+ +..+.. + ++|+.|++++|++++.++..|
T Consensus       177 ~~-~~L~~L~L~~n~~l~---~i~~~~~~~-l~~~L~~L~l~~N~l~~l~~~~~  225 (239)
T 2xwt_C          177 NG-TKLDAVYLNKNKYLT---VIDKDAFGG-VYSGPSLLDVSQTSVTALPSKGL  225 (239)
T ss_dssp             TT-CEEEEEECTTCTTCC---EECTTTTTT-CSBCCSEEECTTCCCCCCCCTTC
T ss_pred             CC-CCCCEEEcCCCCCcc---cCCHHHhhc-cccCCcEEECCCCccccCChhHh
Confidence            66 899999999994 52   33 345666 8 999999999999997665544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=1.2e-20  Score=148.66  Aligned_cols=185  Identities=19%  Similarity=0.142  Sum_probs=140.4

Q ss_pred             ceEEeeccccccccchhHHhhhhh--cCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865           21 RVIALDLSYIYSGEYSWYLNASLF--TPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH   98 (225)
Q Consensus        21 ~v~~l~l~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~   98 (225)
                      ++++|++++|.+.    ...+..+  ..+++|++|++++|.+....+......+..+++|++|++++|.+....+..+..
T Consensus        92 ~L~~L~l~~n~l~----~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  167 (310)
T 4glp_A           92 RLKELTLEDLKIT----GTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA  167 (310)
T ss_dssp             CCCEEEEESCCCB----SCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred             ceeEEEeeCCEec----cchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence            4888899998876    3344444  788999999999999886544222124567999999999999998877888889


Q ss_pred             CCCCCEEEcCCCCCCCc--cch-hhhccCCCCceeecCCCCCcH--HHHHH-HHhhCCCCCEEeccccccccccccCCCC
Q 045865           99 LSSLRSLNLLWNRLEGS--IDV-KELHNFTNLEYLTLESSSLHI--SLLQS-IASIFPSLKNLSMSFCEVNGVVRGQGFP  172 (225)
Q Consensus        99 l~~L~~L~l~~n~~~~~--~~~-~~~~~l~~L~~l~l~~~~~~~--~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~  172 (225)
                      +++|++|++++|.+.+.  ++. ..+..+++|++|++++|.+..  ..+.. +.. +++|++|++++|.+++..|. .+.
T Consensus       168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~-l~~L~~L~Ls~N~l~~~~p~-~~~  245 (310)
T 4glp_A          168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA-GVQPHSLDLSHNSLRATVNP-SAP  245 (310)
T ss_dssp             CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH-TCCCSSEECTTSCCCCCCCS-CCS
T ss_pred             CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc-CCCCCEEECCCCCCCccchh-hHH
Confidence            99999999999987532  221 123578899999999999872  22233 345 89999999999999876565 555


Q ss_pred             CC---CCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCc
Q 045865          173 HF---KSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTN  217 (225)
Q Consensus       173 ~~---~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~  217 (225)
                      .+   ++|++|++++|++.   .+|..+   .++|+.|++++|+|++.
T Consensus       246 ~~~~~~~L~~L~Ls~N~l~---~lp~~~---~~~L~~L~Ls~N~l~~~  287 (310)
T 4glp_A          246 RCMWSSALNSLNLSFAGLE---QVPKGL---PAKLRVLDLSSNRLNRA  287 (310)
T ss_dssp             SCCCCTTCCCEECCSSCCC---SCCSCC---CSCCSCEECCSCCCCSC
T ss_pred             hccCcCcCCEEECCCCCCC---chhhhh---cCCCCEEECCCCcCCCC
Confidence            55   69999999999663   555544   46899999999999873

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=3e-20  Score=158.72  Aligned_cols=108  Identities=20%  Similarity=0.200  Sum_probs=57.6

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL   99 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l   99 (225)
                      ..++.|++++|.+.    .+++..|..+++|++|++++|.+....+.    .|..+++|++|++++|.++...+..+..+
T Consensus        75 ~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l  146 (597)
T 3oja_B           75 RQVELLNLNDLQIE----EIDTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNT  146 (597)
T ss_dssp             CCCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCcEEECCCCCCC----CCChHHhcCCCCCCEEECCCCcCCCCCHH----HHcCCCCCCEEEeeCCCCCCCCHHHhccC
Confidence            35666666666665    44444556666666666666666554443    34555666666666665554434444555


Q ss_pred             CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCC
Q 045865          100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSS  136 (225)
Q Consensus       100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~  136 (225)
                      ++|++|++++|.+.+..+ ..+..+++|+.|++++|.
T Consensus       147 ~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~  182 (597)
T 3oja_B          147 PKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNR  182 (597)
T ss_dssp             TTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECTTSC
T ss_pred             CCCCEEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCC
Confidence            555555555555542222 234444444444444443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.83  E-value=1.8e-20  Score=146.45  Aligned_cols=181  Identities=18%  Similarity=0.189  Sum_probs=148.3

Q ss_pred             CcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhh
Q 045865           18 TTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT   97 (225)
Q Consensus        18 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~   97 (225)
                      ....+++++++++++.    .++...   .+.++.|++++|.+....+.    .+..+++|++|++++|.++...+  ..
T Consensus         8 ~l~~l~~l~~~~~~l~----~ip~~~---~~~l~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~--~~   74 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLT----ALPPDL---PKDTTILHLSENLLYTFSLA----TLMPYTRLTQLNLDRAELTKLQV--DG   74 (290)
T ss_dssp             CSTTCCEEECTTSCCS----SCCSCC---CTTCCEEECTTSCCSEEEGG----GGTTCTTCCEEECTTSCCCEEEC--CS
T ss_pred             ccCCccEEECCCCCCC----cCCCCC---CCCCCEEEcCCCcCCccCHH----HhhcCCCCCEEECCCCccCcccC--CC
Confidence            3457899999999987    555433   26789999999999886665    68999999999999999987433  26


Q ss_pred             cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCC
Q 045865           98 HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSL  177 (225)
Q Consensus        98 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L  177 (225)
                      .+++|++|++++|.+. .+|. .+..+++|+.|++++|.+....+..+.. +++|+.|++++|.++...+. .|..+++|
T Consensus        75 ~l~~L~~L~Ls~N~l~-~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~-~~~~l~~L  150 (290)
T 1p9a_G           75 TLPVLGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRG-LGELQELYLKGNELKTLPPG-LLTPTPKL  150 (290)
T ss_dssp             CCTTCCEEECCSSCCS-SCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTT-CTTCCEEECTTSCCCCCCTT-TTTTCTTC
T ss_pred             CCCcCCEEECCCCcCC-cCch-hhccCCCCCEEECCCCcCcccCHHHHcC-CCCCCEEECCCCCCCccChh-hcccccCC
Confidence            8899999999999997 6775 7788999999999999998554456666 99999999999999854444 88999999


Q ss_pred             cEEEccCCccccchhHHH-HHhhcCCCCcEEEccCCcCCCccc
Q 045865          178 EHFDMRFARIALNTSFLQ-IIGESMPSLKYLLLSYSTLGTNSS  219 (225)
Q Consensus       178 ~~l~l~~n~i~~~~~~~~-~l~~~~~~L~~L~l~~n~l~~~~~  219 (225)
                      +.|++++|++.   .++. .+.. +++|+.|++++|+|+..++
T Consensus       151 ~~L~L~~N~l~---~l~~~~~~~-l~~L~~L~L~~N~l~~ip~  189 (290)
T 1p9a_G          151 EKLSLANNNLT---ELPAGLLNG-LENLDTLLLQENSLYTIPK  189 (290)
T ss_dssp             CEEECTTSCCS---CCCTTTTTT-CTTCCEEECCSSCCCCCCT
T ss_pred             CEEECCCCcCC---ccCHHHhcC-cCCCCEEECCCCcCCccCh
Confidence            99999999663   3443 4566 9999999999999995443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=1.7e-20  Score=160.21  Aligned_cols=134  Identities=20%  Similarity=0.198  Sum_probs=90.9

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL   99 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l   99 (225)
                      ..++.++++++.+.    .+++..+..+++|++|++++|.+....+.    .|..+++|++|++++|.+.+..+..+..+
T Consensus        51 ~~l~~l~l~~~~l~----~lp~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  122 (597)
T 3oja_B           51 NNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNV  122 (597)
T ss_dssp             CCCSEEEESSCEES----EECTHHHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCceEEEeeCCCCC----CcCHHHHccCCCCcEEECCCCCCCCCChH----HhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence            34566777777665    56666677777777777777777765444    46777777777777777777666666777


Q ss_pred             CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccc
Q 045865          100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN  163 (225)
Q Consensus       100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  163 (225)
                      ++|++|++++|.+. .+|...+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|.++
T Consensus       123 ~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          123 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA-TTSLQNLQLSSNRLT  184 (597)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT-CTTCCEEECTTSCCS
T ss_pred             CCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhc-CCcCcEEECcCCCCC
Confidence            77777777777776 555435567777777777777766544445555 666666666666554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=1.2e-20  Score=140.44  Aligned_cols=160  Identities=23%  Similarity=0.241  Sum_probs=119.3

Q ss_pred             CCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCC
Q 045865           47 FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTN  126 (225)
Q Consensus        47 l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  126 (225)
                      .+++++|++++|.+....+.    .+..+++|++|++++|.++...+..+..+++|++|++++|.+. .++...+..+++
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~  101 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNG----VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQ  101 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred             CCCCcEEEcCCCccCcCChh----hhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccC
Confidence            34678888888888764444    4677888888888888887765666777888888888888877 445435677888


Q ss_pred             CceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcE
Q 045865          127 LEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKY  206 (225)
Q Consensus       127 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~  206 (225)
                      |+.|++++|.+.+..+..+.. +++|+.|++++|.+++..+. .+..+++|+.+++++|++  .       +. +++|+.
T Consensus       102 L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~~--~-------~~-~~~l~~  169 (208)
T 2o6s_A          102 LKELALNTNQLQSLPDGVFDK-LTQLKDLRLYQNQLKSVPDG-VFDRLTSLQYIWLHDNPW--D-------CT-CPGIRY  169 (208)
T ss_dssp             CCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSCCB--C-------CC-TTTTHH
T ss_pred             CCEEEcCCCcCcccCHhHhcc-CCcCCEEECCCCccceeCHH-HhccCCCccEEEecCCCe--e-------cC-CCCHHH
Confidence            888888888877544444555 88888888888888744333 678888889999888854  2       23 777888


Q ss_pred             EEccCCcCCCccchhhc
Q 045865          207 LLLSYSTLGTNSSRILH  223 (225)
Q Consensus       207 L~l~~n~l~~~~~~~~~  223 (225)
                      |+++.|.++|.+|+.+.
T Consensus       170 L~~~~n~~~g~ip~~~~  186 (208)
T 2o6s_A          170 LSEWINKHSGVVRNSAG  186 (208)
T ss_dssp             HHHHHHHCTTTBBCTTS
T ss_pred             HHHHHHhCCceeeccCc
Confidence            88888888888887654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=4.1e-21  Score=142.93  Aligned_cols=191  Identities=19%  Similarity=0.199  Sum_probs=153.2

Q ss_pred             ccCCCceeecCC---------cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCC
Q 045865            7 CCQWERVECSNT---------TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNN   77 (225)
Q Consensus         7 ~c~~~~~~~~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~   77 (225)
                      .|.|.++.|...         ..+++.|++++|++.    .+++..+..+++|++|++++|.+....+.    .+..+++
T Consensus         6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~   77 (208)
T 2o6s_A            6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLK----SLPNGVFDELTSLTQLYLGGNKLQSLPNG----VFNKLTS   77 (208)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCTT----TTTTCTT
T ss_pred             EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccC----cCChhhhcccccCcEEECCCCccCccChh----hcCCCCC
Confidence            477888888753         346899999999997    66777889999999999999999875444    4788999


Q ss_pred             CCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEec
Q 045865           78 LKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSM  157 (225)
Q Consensus        78 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l  157 (225)
                      |++|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+.. +++|+.|++
T Consensus        78 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-l~~L~~L~l  155 (208)
T 2o6s_A           78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR-LTSLQYIWL  155 (208)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT-CTTCCEEEC
T ss_pred             cCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhcc-CCCccEEEe
Confidence            999999999999876777889999999999999998 555546888999999999999988544444666 899999999


Q ss_pred             cccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865          158 SFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL  222 (225)
Q Consensus       158 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~  222 (225)
                      ++|.+.        +.+++|+.++++.|  ...+.+|..++. ++.    ++..|...+..+..+
T Consensus       156 ~~N~~~--------~~~~~l~~L~~~~n--~~~g~ip~~~~~-l~~----~~~~C~~~~~~~~~~  205 (208)
T 2o6s_A          156 HDNPWD--------CTCPGIRYLSEWIN--KHSGVVRNSAGS-VAP----DSAKCSGSGKPVRSI  205 (208)
T ss_dssp             CSCCBC--------CCTTTTHHHHHHHH--HCTTTBBCTTSS-BCT----TCSBBTTTCCBGGGC
T ss_pred             cCCCee--------cCCCCHHHHHHHHH--hCCceeeccCcc-ccC----CccccccCCCcceee
Confidence            999765        34567899999999  556777877766 554    556666665555543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.82  E-value=8.7e-21  Score=162.07  Aligned_cols=163  Identities=22%  Similarity=0.310  Sum_probs=79.8

Q ss_pred             hcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCc-cchhhhc
Q 045865           44 FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGS-IDVKELH  122 (225)
Q Consensus        44 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~  122 (225)
                      +..+++|++|++++|.+.+..+..   .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+. .+.
T Consensus       395 ~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~  470 (606)
T 3vq2_A          395 FMGLEELQHLDFQHSTLKRVTEFS---AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN-VFA  470 (606)
T ss_dssp             CTTCTTCCEEECTTSEEESTTTTT---TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS-CCT
T ss_pred             ccCCCCCCeeECCCCccCCccChh---hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH-hhc
Confidence            344444444444444444433211   244455555555555555444444455555555555555554432 222 444


Q ss_pred             cCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCC
Q 045865          123 NFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMP  202 (225)
Q Consensus       123 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~  202 (225)
                      .+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+++..+. .+.++++|+.|++++|++   ..+|..+.. ++
T Consensus       471 ~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~l~~N~l---~~~p~~~~~-l~  544 (606)
T 3vq2_A          471 NTTNLTFLDLSKCQLEQISWGVFDT-LHRLQLLNMSHNNLLFLDSS-HYNQLYSLSTLDCSFNRI---ETSKGILQH-FP  544 (606)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCSCEEGG-GTTTCTTCCEEECTTSCC---CCEESCGGG-SC
T ss_pred             cCCCCCEEECCCCcCCccChhhhcc-cccCCEEECCCCcCCCcCHH-HccCCCcCCEEECCCCcC---cccCHhHhh-hc
Confidence            5555555555555554433344444 55555555555555544444 555555555555555543   133333444 44


Q ss_pred             -CCcEEEccCCcCCC
Q 045865          203 -SLKYLLLSYSTLGT  216 (225)
Q Consensus       203 -~L~~L~l~~n~l~~  216 (225)
                       +|+.|++++|++..
T Consensus       545 ~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          545 KSLAFFNLTNNSVAC  559 (606)
T ss_dssp             TTCCEEECCSCCCCC
T ss_pred             ccCcEEEccCCCccc
Confidence             35555555555554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=3e-19  Score=141.97  Aligned_cols=185  Identities=24%  Similarity=0.310  Sum_probs=136.3

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCC-CCChh-hHHhhh
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGN-SFNNS-ILSSLT   97 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~-~~~~l~   97 (225)
                      .+++.|++++|.+..   ...+..+..+++|++|++++|.+....+.    .+..+++|++|++++| .+++. .+..+.
T Consensus        93 ~~L~~L~L~~~~l~~---~~~~~~~~~~~~L~~L~L~~~~l~~~~~~----~l~~~~~L~~L~L~~~~~l~~~~l~~~~~  165 (336)
T 2ast_B           93 FRVQHMDLSNSVIEV---STLHGILSQCSKLQNLSLEGLRLSDPIVN----TLAKNSNLVRLNLSGCSGFSEFALQTLLS  165 (336)
T ss_dssp             BCCCEEECTTCEECH---HHHHHHHTTBCCCSEEECTTCBCCHHHHH----HHTTCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred             CCCCEEEccCCCcCH---HHHHHHHhhCCCCCEEeCcCcccCHHHHH----HHhcCCCCCEEECCCCCCCCHHHHHHHHh
Confidence            577888888887753   22445677888899999998887654554    5778899999999988 67753 566677


Q ss_pred             cCCCCCEEEcCCC-CCCCc-cchhhhccCC-CCceeecCCC--CCc-HHHHHHHHhhCCCCCEEeccccc-cccccccCC
Q 045865           98 HLSSLRSLNLLWN-RLEGS-IDVKELHNFT-NLEYLTLESS--SLH-ISLLQSIASIFPSLKNLSMSFCE-VNGVVRGQG  170 (225)
Q Consensus        98 ~l~~L~~L~l~~n-~~~~~-~~~~~~~~l~-~L~~l~l~~~--~~~-~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~  170 (225)
                      .+++|++|++++| .+.+. ++. .+..++ +|+.|++++|  .++ ..++..+.. +++|+.|++++|. +++..+. .
T Consensus       166 ~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~-~  242 (336)
T 2ast_B          166 SCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNLQKSDLSTLVRR-CPNLVHLDLSDSVMLKNDCFQ-E  242 (336)
T ss_dssp             HCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH-CTTCSEEECTTCTTCCGGGGG-G
T ss_pred             cCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEeCCCcccCCHHHHHHHHhh-CCCCCEEeCCCCCcCCHHHHH-H
Confidence            8889999999988 77633 333 677788 8999999888  455 344555666 8999999999988 6655555 6


Q ss_pred             CCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCc
Q 045865          171 FPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTN  217 (225)
Q Consensus       171 ~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~  217 (225)
                      +.++++|+.|++++|. .........+++ +++|+.|++++| ++..
T Consensus       243 l~~l~~L~~L~l~~~~-~~~~~~~~~l~~-~~~L~~L~l~~~-i~~~  286 (336)
T 2ast_B          243 FFQLNYLQHLSLSRCY-DIIPETLLELGE-IPTLKTLQVFGI-VPDG  286 (336)
T ss_dssp             GGGCTTCCEEECTTCT-TCCGGGGGGGGG-CTTCCEEECTTS-SCTT
T ss_pred             HhCCCCCCEeeCCCCC-CCCHHHHHHHhc-CCCCCEEeccCc-cCHH
Confidence            7788889999999884 223333345677 888888888888 5543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.82  E-value=2.6e-19  Score=144.01  Aligned_cols=202  Identities=23%  Similarity=0.250  Sum_probs=148.3

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCC-CccEEEccCCcccCcchhhHHHHHhcC-CCCCEEECCCCCCChhhHHh-
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQ-QLESLDLTQNKIAGCVENEGIERLSRL-NNLKMLNLSGNSFNNSILSS-   95 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~~~~~~~-   95 (225)
                      ...+++|++++|.+...........+..++ +|++|++++|.+....+......+... ++|++|++++|.++...+.. 
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            456999999999988543333447788888 899999999999886666433344444 99999999999997655554 


Q ss_pred             ---hhcC-CCCCEEEcCCCCCCCccchhhh----cc-CCCCceeecCCCCCcH----HHHHHHHhhCC-CCCEEeccccc
Q 045865           96 ---LTHL-SSLRSLNLLWNRLEGSIDVKEL----HN-FTNLEYLTLESSSLHI----SLLQSIASIFP-SLKNLSMSFCE  161 (225)
Q Consensus        96 ---l~~l-~~L~~L~l~~n~~~~~~~~~~~----~~-l~~L~~l~l~~~~~~~----~~~~~~~~~~~-~L~~L~l~~n~  161 (225)
                         +..+ ++|++|++++|.+. ..+...+    .. ..+|+.|++++|.+.+    .++..+.. ++ +|+.|++++|.
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~-~~~~L~~L~Ls~n~  178 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFS-SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAA-IPANVNSLNLRGNN  178 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGG-GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHT-SCTTCCEEECTTSC
T ss_pred             HHHHHhCCCCccEEECcCCcCC-cHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhc-CCccccEeeecCCC
Confidence               4444 89999999999987 3333233    33 3589999999999874    34455555 55 99999999999


Q ss_pred             ccccccc---CCCCCC-CCCcEEEccCCccccc--hhHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865          162 VNGVVRG---QGFPHF-KSLEHFDMRFARIALN--TSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL  222 (225)
Q Consensus       162 ~~~~~~~---~~~~~~-~~L~~l~l~~n~i~~~--~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~  222 (225)
                      +++..+.   ..+..+ ++|+.|++++|++...  ..++..+....++|+.|++++|.+++..++.+
T Consensus       179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  245 (362)
T 3goz_A          179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL  245 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHH
T ss_pred             CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHH
Confidence            8755442   123345 5899999999976332  13677777624599999999999998776443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.81  E-value=8.9e-21  Score=162.03  Aligned_cols=189  Identities=20%  Similarity=0.188  Sum_probs=133.9

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhH-Hhhhc
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSIL-SSLTH   98 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~   98 (225)
                      ..++.|++++|.+...  ...+..+..++.|++|++++|.+.. .+.    .+..+++|++|++++|.+.+..+ ..+..
T Consensus       350 ~~L~~L~ls~n~l~~~--~~~~~~~~~~~~L~~L~L~~n~l~~-~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  422 (606)
T 3vq2_A          350 PSLSYLDLSRNALSFS--GCCSYSDLGTNSLRHLDLSFNGAII-MSA----NFMGLEELQHLDFQHSTLKRVTEFSAFLS  422 (606)
T ss_dssp             TTCCEEECCSSCEEEE--EECCHHHHCCSCCCEEECCSCSEEE-ECC----CCTTCTTCCEEECTTSEEESTTTTTTTTT
T ss_pred             CCCCEEECcCCccCCC--cchhhhhccCCcccEeECCCCcccc-chh----hccCCCCCCeeECCCCccCCccChhhhhc
Confidence            4566777777766521  1113455667777777777777665 333    46777888888888887766555 56777


Q ss_pred             CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHH-HHHHHHhhCCCCCEEeccccccccccccCCCCCCCCC
Q 045865           99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHIS-LLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSL  177 (225)
Q Consensus        99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L  177 (225)
                      +++|++|++++|.+....+. .+..+++|+.|++++|.+.+. .+..+.. +++|+.|++++|.+++..+. .+.++++|
T Consensus       423 l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L  499 (606)
T 3vq2_A          423 LEKLLYLDISYTNTKIDFDG-IFLGLTSLNTLKMAGNSFKDNTLSNVFAN-TTNLTFLDLSKCQLEQISWG-VFDTLHRL  499 (606)
T ss_dssp             CTTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTT-CTTCCEEECTTSCCCEECTT-TTTTCTTC
T ss_pred             cccCCEEECcCCCCCccchh-hhcCCCCCCEEECCCCcCCCcchHHhhcc-CCCCCEEECCCCcCCccChh-hhcccccC
Confidence            88888888888887644444 677788888888888887653 4555566 78888888888888765555 78888888


Q ss_pred             cEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865          178 EHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL  222 (225)
Q Consensus       178 ~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~  222 (225)
                      +.|++++|++  .+..|..+.. +++|+.|++++|+++ .+|..+
T Consensus       500 ~~L~Ls~N~l--~~~~~~~~~~-l~~L~~L~l~~N~l~-~~p~~~  540 (606)
T 3vq2_A          500 QLLNMSHNNL--LFLDSSHYNQ-LYSLSTLDCSFNRIE-TSKGIL  540 (606)
T ss_dssp             CEEECCSSCC--SCEEGGGTTT-CTTCCEEECTTSCCC-CEESCG
T ss_pred             CEEECCCCcC--CCcCHHHccC-CCcCCEEECCCCcCc-ccCHhH
Confidence            8888888844  4445667777 888888888888888 444433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.81  E-value=1e-20  Score=149.33  Aligned_cols=181  Identities=20%  Similarity=0.221  Sum_probs=143.6

Q ss_pred             CcCceEEeeccccccccchhHHhhhhhcCC-----CCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChh-
Q 045865           18 TTGRVIALDLSYIYSGEYSWYLNASLFTPF-----QQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNS-   91 (225)
Q Consensus        18 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-   91 (225)
                      ....++.|++++|++..    + +..+..+     ++|++|++++|.+.+..+.    .+..+++|++|++++|.+.+. 
T Consensus       119 ~l~~L~~L~Ls~N~l~~----~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~  189 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWAT----R-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE----QVRVFPALSTLDLSDNPELGER  189 (312)
T ss_dssp             CSCCCSEEEEESCBCSS----S-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT----TCCCCSSCCEEECCSCTTCHHH
T ss_pred             cCCCccEEEccCCCCcc----h-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH----HhccCCCCCEEECCCCCcCcch
Confidence            35689999999999974    3 3344444     8999999999999986656    588999999999999998764 


Q ss_pred             -hHHhh--hcCCCCCEEEcCCCCCCC--ccchhhhccCCCCceeecCCCCCcHHHH-HHHHhhCCCCCEEeccccccccc
Q 045865           92 -ILSSL--THLSSLRSLNLLWNRLEG--SIDVKELHNFTNLEYLTLESSSLHISLL-QSIASIFPSLKNLSMSFCEVNGV  165 (225)
Q Consensus        92 -~~~~l--~~l~~L~~L~l~~n~~~~--~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~  165 (225)
                       .+..+  ..+++|++|++++|.+..  ..+...+..+++|+.|++++|.+.+..+ ..+.. +++|+.|++++|.++ .
T Consensus       190 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-l~~L~~L~Ls~N~l~-~  267 (312)
T 1wwl_A          190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW-PSQLNSLNLSFTGLK-Q  267 (312)
T ss_dssp             HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC-CTTCCEEECTTSCCS-S
T ss_pred             HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh-cCCCCEEECCCCccC-h
Confidence             34444  789999999999999872  2222244577899999999999886543 23334 789999999999998 6


Q ss_pred             cccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCc
Q 045865          166 VRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTN  217 (225)
Q Consensus       166 ~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~  217 (225)
                      +|. .+.  ++|+.|++++|++..   +|. +.. +++|+.|++++|++++.
T Consensus       268 ip~-~~~--~~L~~L~Ls~N~l~~---~p~-~~~-l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          268 VPK-GLP--AKLSVLDLSYNRLDR---NPS-PDE-LPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CCS-SCC--SEEEEEECCSSCCCS---CCC-TTT-SCEEEEEECTTCTTTCC
T ss_pred             hhh-hcc--CCceEEECCCCCCCC---Chh-Hhh-CCCCCEEeccCCCCCCC
Confidence            666 444  899999999997632   254 777 99999999999999864

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=2.6e-19  Score=141.01  Aligned_cols=169  Identities=20%  Similarity=0.315  Sum_probs=95.4

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL   99 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l   99 (225)
                      .+++.|++++|.+.    .+++  +..+++|++|++++|.+.. .+     .+..+++|++|++++|.+....  .+..+
T Consensus        63 ~~L~~L~L~~n~i~----~~~~--~~~l~~L~~L~L~~n~l~~-~~-----~~~~l~~L~~L~l~~n~l~~~~--~l~~l  128 (308)
T 1h6u_A           63 NNLIGLELKDNQIT----DLAP--LKNLTKITELELSGNPLKN-VS-----AIAGLQSIKTLDLTSTQITDVT--PLAGL  128 (308)
T ss_dssp             TTCCEEECCSSCCC----CCGG--GTTCCSCCEEECCSCCCSC-CG-----GGTTCTTCCEEECTTSCCCCCG--GGTTC
T ss_pred             CCCCEEEccCCcCC----CChh--HccCCCCCEEEccCCcCCC-ch-----hhcCCCCCCEEECCCCCCCCch--hhcCC
Confidence            45566666666554    2232  5556666666666666554 22     2556666666666666665532  25566


Q ss_pred             CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcE
Q 045865          100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEH  179 (225)
Q Consensus       100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  179 (225)
                      ++|++|++++|.+. .++  .+..+++|+.|++++|.+.+..+  +.. +++|+.|++++|.+++. +.  +..+++|+.
T Consensus       129 ~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~-l~~L~~L~l~~n~l~~~-~~--l~~l~~L~~  199 (308)
T 1h6u_A          129 SNLQVLYLDLNQIT-NIS--PLAGLTNLQYLSIGNAQVSDLTP--LAN-LSKLTTLKADDNKISDI-SP--LASLPNLIE  199 (308)
T ss_dssp             TTCCEEECCSSCCC-CCG--GGGGCTTCCEEECCSSCCCCCGG--GTT-CTTCCEEECCSSCCCCC-GG--GGGCTTCCE
T ss_pred             CCCCEEECCCCccC-cCc--cccCCCCccEEEccCCcCCCChh--hcC-CCCCCEEECCCCccCcC-hh--hcCCCCCCE
Confidence            66666666666655 333  25556666666666666553222  444 66666666666666532 21  455666666


Q ss_pred             EEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCC
Q 045865          180 FDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGT  216 (225)
Q Consensus       180 l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~  216 (225)
                      |++++|++...   + .+.. +++|+.|++++|++++
T Consensus       200 L~L~~N~l~~~---~-~l~~-l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          200 VHLKNNQISDV---S-PLAN-TSNLFIVTLTNQTITN  231 (308)
T ss_dssp             EECTTSCCCBC---G-GGTT-CTTCCEEEEEEEEEEC
T ss_pred             EEccCCccCcc---c-cccC-CCCCCEEEccCCeeec
Confidence            66666654222   1 2455 6666666666666654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.81  E-value=3.2e-19  Score=144.64  Aligned_cols=196  Identities=17%  Similarity=0.180  Sum_probs=129.0

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCccc---CcchhhH---HHHHhcCCCCCEEECCCCCCCh--
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIA---GCVENEG---IERLSRLNNLKMLNLSGNSFNN--   90 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~---~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~--   90 (225)
                      ...++.|++++|++........+..+..+++|++|++++|.+.   +..|...   ...+..+++|++|++++|.+..  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            3568889999888875433334455778888888888886543   2233321   2234678888888888888876  


Q ss_pred             --hhHHhhhcCCCCCEEEcCCCCCCCccch---hhhccC---------CCCceeecCCCCCcH-HHH---HHHHhhCCCC
Q 045865           91 --SILSSLTHLSSLRSLNLLWNRLEGSIDV---KELHNF---------TNLEYLTLESSSLHI-SLL---QSIASIFPSL  152 (225)
Q Consensus        91 --~~~~~l~~l~~L~~L~l~~n~~~~~~~~---~~~~~l---------~~L~~l~l~~~~~~~-~~~---~~~~~~~~~L  152 (225)
                        .++..+..+++|++|++++|.+....+.   ..+..+         ++|+.|++++|.+.. ..+   ..+.. +++|
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L  189 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS-HRLL  189 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH-CTTC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh-CCCc
Confidence              4666777888888888888877522111   022223         678888888887762 222   34555 7788


Q ss_pred             CEEecccccccc-----ccccCCCCCCCCCcEEEccCCccccc--hhHHHHHhhcCCCCcEEEccCCcCCCc
Q 045865          153 KNLSMSFCEVNG-----VVRGQGFPHFKSLEHFDMRFARIALN--TSFLQIIGESMPSLKYLLLSYSTLGTN  217 (225)
Q Consensus       153 ~~L~l~~n~~~~-----~~~~~~~~~~~~L~~l~l~~n~i~~~--~~~~~~l~~~~~~L~~L~l~~n~l~~~  217 (225)
                      +.|++++|.++.     ..+. .+.++++|+.|++++|.+...  ..++..+.. +++|+.|++++|.+++.
T Consensus       190 ~~L~L~~n~l~~~g~~~l~~~-~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~-~~~L~~L~L~~n~i~~~  259 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIEHLLLE-GLAYCQELKVLDLQDNTFTHLGSSALAIALKS-WPNLRELGLNDCLLSAR  259 (386)
T ss_dssp             CEEECCSSCCCHHHHHHHHHT-TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG-CTTCCEEECTTCCCCHH
T ss_pred             CEEECcCCCCCHhHHHHHHHH-HhhcCCCccEEECcCCCCCcHHHHHHHHHHcc-CCCcCEEECCCCCCchh
Confidence            888888887762     1222 566777788888888744211  445666676 77777777777777765

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.81  E-value=9.2e-21  Score=167.71  Aligned_cols=200  Identities=20%  Similarity=0.213  Sum_probs=160.7

Q ss_pred             CCCceeecCCcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcc-hhhHHHHHhcCCCCCEEECCCCC
Q 045865            9 QWERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCV-ENEGIERLSRLNNLKMLNLSGNS   87 (225)
Q Consensus         9 ~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~~~~~l~~L~~L~l~~~~   87 (225)
                      ++..+..  .+..++.|++++|.+.    .+.+..|.++++|++|++++|.+...+ +.    .|..+++|++|++++|.
T Consensus        15 ~L~~vP~--lp~~l~~LdLs~N~i~----~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~----~f~~L~~L~~L~Ls~N~   84 (844)
T 3j0a_A           15 NLTQVPQ--VLNTTERLLLSFNYIR----TVTASSFPFLEQLQLLELGSQYTPLTIDKE----AFRNLPNLRILDLGSSK   84 (844)
T ss_dssp             CSSCCCS--SCTTCCEEEEESCCCC----EECSSSCSSCCSCSEEEECTTCCCCEECTT----TTSSCTTCCEEECTTCC
T ss_pred             CCCCCCC--CCCCcCEEECCCCcCC----ccChhHCcccccCeEEeCCCCCCccccCHH----HhcCCCCCCEEECCCCc
Confidence            3444444  4578999999999997    677788999999999999999665545 44    68999999999999999


Q ss_pred             CChhhHHhhhcCCCCCEEEcCCCCCCCccch-hhhccCCCCceeecCCCCCcHHHH-HHHHhhCCCCCEEeccccccccc
Q 045865           88 FNNSILSSLTHLSSLRSLNLLWNRLEGSIDV-KELHNFTNLEYLTLESSSLHISLL-QSIASIFPSLKNLSMSFCEVNGV  165 (225)
Q Consensus        88 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~  165 (225)
                      +....|..+..+++|++|++++|.+.+..+. ..+..+++|+.|++++|.+.+..+ ..+.. +++|+.|++++|.+++.
T Consensus        85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~-L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A           85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK-LNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT-CSSCCEEEEESSCCCCC
T ss_pred             CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhh-CCCCCEEECCCCcCCee
Confidence            9998899999999999999999999854543 238889999999999999875443 45666 99999999999999866


Q ss_pred             cccCCCCCC--CCCcEEEccCCccccchhHHHHHhhcCCC------CcEEEccCCcCCCccchhhc
Q 045865          166 VRGQGFPHF--KSLEHFDMRFARIALNTSFLQIIGESMPS------LKYLLLSYSTLGTNSSRILH  223 (225)
Q Consensus       166 ~~~~~~~~~--~~L~~l~l~~n~i~~~~~~~~~l~~~~~~------L~~L~l~~n~l~~~~~~~~~  223 (225)
                      .+. .+..+  ++|+.++++.|.+  .+..+..++. +++      |+.|++++|.+++..|..+.
T Consensus       164 ~~~-~l~~l~~~~L~~L~L~~n~l--~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  225 (844)
T 3j0a_A          164 CEH-ELEPLQGKTLSFFSLAANSL--YSRVSVDWGK-CMNPFRNMVLEILDVSGNGWTVDITGNFS  225 (844)
T ss_dssp             CSG-GGHHHHHCSSCCCEECCSBS--CCCCCCCCCS-SSCTTTTCCBSEEBCSSCCSSTTTTSGGG
T ss_pred             CHH-HcccccCCccceEECCCCcc--ccccccchhh-cCCccccCceeEEecCCCcCchhHHHHHH
Confidence            555 66666  7899999999954  3444443444 444      99999999999988877664

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.81  E-value=5.3e-20  Score=146.34  Aligned_cols=161  Identities=20%  Similarity=0.230  Sum_probs=112.6

Q ss_pred             hcCCCCccEEEccCCcccCc-chhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCC-CCCCc-cchhh
Q 045865           44 FTPFQQLESLDLTQNKIAGC-VENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWN-RLEGS-IDVKE  120 (225)
Q Consensus        44 ~~~l~~L~~L~l~~n~i~~~-~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~~  120 (225)
                      +..+++|++|++++|.+... .+.    .+..+++|++|++++|.+++..+..+..+++|++|++++| .+.+. ++. .
T Consensus        89 ~~~~~~L~~L~L~~~~l~~~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~  163 (336)
T 2ast_B           89 HFSPFRVQHMDLSNSVIEVSTLHG----ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-L  163 (336)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHH----HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-H
T ss_pred             hccCCCCCEEEccCCCcCHHHHHH----HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-H
Confidence            34567788888888876543 333    4677888888888888887777777778888888888888 45432 332 5


Q ss_pred             hccCCCCceeecCCC-CCcHH-HHHHHHhhCC-CCCEEecccc--ccc-cccccCCCCCCCCCcEEEccCCccccchhHH
Q 045865          121 LHNFTNLEYLTLESS-SLHIS-LLQSIASIFP-SLKNLSMSFC--EVN-GVVRGQGFPHFKSLEHFDMRFARIALNTSFL  194 (225)
Q Consensus       121 ~~~l~~L~~l~l~~~-~~~~~-~~~~~~~~~~-~L~~L~l~~n--~~~-~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~  194 (225)
                      +..+++|+.|++++| .+.+. .+..+.. ++ +|+.|++++|  .++ +..+. .+.++++|+.|++++|.. .++..+
T Consensus       164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-l~~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~-l~~~~~  240 (336)
T 2ast_B          164 LSSCSRLDELNLSWCFDFTEKHVQVAVAH-VSETITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLDLSDSVM-LKNDCF  240 (336)
T ss_dssp             HHHCTTCCEEECCCCTTCCHHHHHHHHHH-SCTTCCEEECCSCGGGSCHHHHHH-HHHHCTTCSEEECTTCTT-CCGGGG
T ss_pred             HhcCCCCCEEcCCCCCCcChHHHHHHHHh-cccCCCEEEeCCCcccCCHHHHHH-HHhhCCCCCEEeCCCCCc-CCHHHH
Confidence            667788888888888 77754 3455555 77 8888888888  344 23333 556778888888888841 344555


Q ss_pred             HHHhhcCCCCcEEEccCCc
Q 045865          195 QIIGESMPSLKYLLLSYST  213 (225)
Q Consensus       195 ~~l~~~~~~L~~L~l~~n~  213 (225)
                      ..+++ +++|+.|++++|.
T Consensus       241 ~~l~~-l~~L~~L~l~~~~  258 (336)
T 2ast_B          241 QEFFQ-LNYLQHLSLSRCY  258 (336)
T ss_dssp             GGGGG-CTTCCEEECTTCT
T ss_pred             HHHhC-CCCCCEeeCCCCC
Confidence            56777 8888888888884

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=1.5e-18  Score=136.56  Aligned_cols=173  Identities=20%  Similarity=0.292  Sum_probs=144.3

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH   98 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~   98 (225)
                      ..+++.|+++++.+.    .++  .+..+++|++|++++|.+.. .+.     +..+++|++|++++|.+...  ..+..
T Consensus        40 l~~L~~L~l~~~~i~----~l~--~~~~l~~L~~L~L~~n~i~~-~~~-----~~~l~~L~~L~L~~n~l~~~--~~~~~  105 (308)
T 1h6u_A           40 LDGITTLSAFGTGVT----TIE--GVQYLNNLIGLELKDNQITD-LAP-----LKNLTKITELELSGNPLKNV--SAIAG  105 (308)
T ss_dssp             HHTCCEEECTTSCCC----CCT--TGGGCTTCCEEECCSSCCCC-CGG-----GTTCCSCCEEECCSCCCSCC--GGGTT
T ss_pred             cCCcCEEEeeCCCcc----Cch--hhhccCCCCEEEccCCcCCC-Chh-----HccCCCCCEEEccCCcCCCc--hhhcC
Confidence            457899999999887    333  47889999999999999987 333     78899999999999999874  36888


Q ss_pred             CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc
Q 045865           99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE  178 (225)
Q Consensus        99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  178 (225)
                      +++|++|++++|.+. .++  .+..+++|+.|++++|.+.+..+  +.. +++|+.|++++|.+++. +.  +..+++|+
T Consensus       106 l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~-l~~L~~L~l~~n~l~~~-~~--l~~l~~L~  176 (308)
T 1h6u_A          106 LQSIKTLDLTSTQIT-DVT--PLAGLSNLQVLYLDLNQITNISP--LAG-LTNLQYLSIGNAQVSDL-TP--LANLSKLT  176 (308)
T ss_dssp             CTTCCEEECTTSCCC-CCG--GGTTCTTCCEEECCSSCCCCCGG--GGG-CTTCCEEECCSSCCCCC-GG--GTTCTTCC
T ss_pred             CCCCCEEECCCCCCC-Cch--hhcCCCCCCEEECCCCccCcCcc--ccC-CCCccEEEccCCcCCCC-hh--hcCCCCCC
Confidence            999999999999997 454  58889999999999999875433  666 99999999999999853 33  78899999


Q ss_pred             EEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccc
Q 045865          179 HFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSS  219 (225)
Q Consensus       179 ~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~  219 (225)
                      .|++++|++...   +. +.. +++|+.|++++|++++..|
T Consensus       177 ~L~l~~n~l~~~---~~-l~~-l~~L~~L~L~~N~l~~~~~  212 (308)
T 1h6u_A          177 TLKADDNKISDI---SP-LAS-LPNLIEVHLKNNQISDVSP  212 (308)
T ss_dssp             EEECCSSCCCCC---GG-GGG-CTTCCEEECTTSCCCBCGG
T ss_pred             EEECCCCccCcC---hh-hcC-CCCCCEEEccCCccCcccc
Confidence            999999976332   22 677 9999999999999997664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.80  E-value=1e-20  Score=162.71  Aligned_cols=192  Identities=13%  Similarity=0.214  Sum_probs=145.3

Q ss_pred             cCceEEeeccccccccc-------------hhHHhhhhhc--CCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEEC
Q 045865           19 TGRVIALDLSYIYSGEY-------------SWYLNASLFT--PFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNL   83 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~-------------~~~~~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l   83 (225)
                      ..+++.|++++|.+...             .....+..+.  ++++|++|++++|.+.+..|.    .+..+++|++|++
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~L  280 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT----FLKALPEMQLINV  280 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT----TTTTCSSCCEEEC
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH----HHhcCCCCCEEEC
Confidence            46889999999998730             0001445666  899999999999998887887    6889999999999


Q ss_pred             CCCC-CCh-hhHHhhhcC------CCCCEEEcCCCCCCCccch-hhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCE
Q 045865           84 SGNS-FNN-SILSSLTHL------SSLRSLNLLWNRLEGSIDV-KELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKN  154 (225)
Q Consensus        84 ~~~~-l~~-~~~~~l~~l------~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~  154 (225)
                      ++|. +++ ..|..+..+      ++|++|++++|.+. .+|. ..+..+++|+.|++++|.+.+.+| .+.. +++|+.
T Consensus       281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~-l~~L~~  357 (636)
T 4eco_A          281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS-EIKLAS  357 (636)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE-EEEESE
T ss_pred             cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCC-CCCCCE
Confidence            9998 887 788888776      89999999999987 6663 257888899999999998876666 5555 778888


Q ss_pred             EeccccccccccccCCCCCCCC-CcEEEccCCccccchhHHHHHhhcCC--CCcEEEccCCcCCCccchhhc
Q 045865          155 LSMSFCEVNGVVRGQGFPHFKS-LEHFDMRFARIALNTSFLQIIGESMP--SLKYLLLSYSTLGTNSSRILH  223 (225)
Q Consensus       155 L~l~~n~~~~~~~~~~~~~~~~-L~~l~l~~n~i~~~~~~~~~l~~~~~--~L~~L~l~~n~l~~~~~~~~~  223 (225)
                      |++++|.++ .+|. .+.++++ |+.|++++|++  . .+|..+.. ++  +|+.|++++|.+++.+|+.+.
T Consensus       358 L~L~~N~l~-~lp~-~l~~l~~~L~~L~Ls~N~l--~-~lp~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~  423 (636)
T 4eco_A          358 LNLAYNQIT-EIPA-NFCGFTEQVENLSFAHNKL--K-YIPNIFDA-KSVSVMSAIDFSYNEIGSVDGKNFD  423 (636)
T ss_dssp             EECCSSEEE-ECCT-TSEEECTTCCEEECCSSCC--S-SCCSCCCT-TCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred             EECCCCccc-cccH-hhhhhcccCcEEEccCCcC--c-ccchhhhh-cccCccCEEECcCCcCCCcchhhhc
Confidence            888888777 5565 6777777 88888888754  2 45554443 33  677777777777776666554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.80  E-value=6.3e-20  Score=158.76  Aligned_cols=157  Identities=23%  Similarity=0.268  Sum_probs=110.0

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH   98 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~   98 (225)
                      +.+++.|++++|.+.    .+++..|.++++|++|++++|.+.+..+.    .+..+++|++|++++|.+....+..+..
T Consensus        24 ~~~l~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~   95 (680)
T 1ziw_A           24 PTNITVLNLTHNQLR----RLPAANFTRYSQLTSLDVGFNTISKLEPE----LCQKLPMLKVLNLQHNELSQLSDKTFAF   95 (680)
T ss_dssp             CTTCSEEECCSSCCC----CCCGGGGGGGTTCSEEECCSSCCCCCCTT----HHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCCcEEECCCCCCC----CcCHHHHhCCCcCcEEECCCCccCccCHH----HHhcccCcCEEECCCCccCccChhhhcc
Confidence            357899999999887    56777788888899999988888876666    5778888888888888887755556778


Q ss_pred             CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCC--CCCCC
Q 045865           99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGF--PHFKS  176 (225)
Q Consensus        99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~~  176 (225)
                      +++|++|++++|.+. .+++..+..+++|++|++++|.+.+..+..+.. +++|++|++++|.+++..+. .+  ..+++
T Consensus        96 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~  172 (680)
T 1ziw_A           96 CTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSE-ELDIFANSS  172 (680)
T ss_dssp             CTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSC-CTTCCEEECCSSCCCCBCHH-HHGGGTTCE
T ss_pred             CCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcc-cccCCEEEccCCcccccCHH-Hhhcccccc
Confidence            888888888888776 444336677777777777777665444444444 66677777777666543322 22  23455


Q ss_pred             CcEEEccCCc
Q 045865          177 LEHFDMRFAR  186 (225)
Q Consensus       177 L~~l~l~~n~  186 (225)
                      |+.|++++|+
T Consensus       173 L~~L~L~~n~  182 (680)
T 1ziw_A          173 LKKLELSSNQ  182 (680)
T ss_dssp             ESEEECTTCC
T ss_pred             ccEEECCCCc
Confidence            5566665553

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=3.4e-19  Score=139.26  Aligned_cols=174  Identities=20%  Similarity=0.232  Sum_probs=144.2

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH   98 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~   98 (225)
                      ..+++.|+++++.+.    .++  .+..+++|++|++++|.+.. .++     +..+++|++|++++|.+...  ..+..
T Consensus        45 l~~L~~L~l~~~~i~----~~~--~~~~l~~L~~L~L~~n~l~~-~~~-----l~~l~~L~~L~l~~n~l~~~--~~l~~  110 (291)
T 1h6t_A           45 LNSIDQIIANNSDIK----SVQ--GIQYLPNVTKLFLNGNKLTD-IKP-----LANLKNLGWLFLDENKVKDL--SSLKD  110 (291)
T ss_dssp             HHTCCEEECTTSCCC----CCT--TGGGCTTCCEEECCSSCCCC-CGG-----GTTCTTCCEEECCSSCCCCG--GGGTT
T ss_pred             cCcccEEEccCCCcc----cCh--hHhcCCCCCEEEccCCccCC-Ccc-----cccCCCCCEEECCCCcCCCC--hhhcc
Confidence            357899999999887    332  37889999999999999987 333     68899999999999999873  34889


Q ss_pred             CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc
Q 045865           99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE  178 (225)
Q Consensus        99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  178 (225)
                      +++|++|++++|.+. .++  .+..+++|+.|++++|.+.+.  ..+.. +++|+.|++++|.+++..+   +..+++|+
T Consensus       111 l~~L~~L~L~~n~i~-~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~-l~~L~~L~L~~N~l~~~~~---l~~l~~L~  181 (291)
T 1h6t_A          111 LKKLKSLSLEHNGIS-DIN--GLVHLPQLESLYLGNNKITDI--TVLSR-LTKLDTLSLEDNQISDIVP---LAGLTKLQ  181 (291)
T ss_dssp             CTTCCEEECTTSCCC-CCG--GGGGCTTCCEEECCSSCCCCC--GGGGG-CTTCSEEECCSSCCCCCGG---GTTCTTCC
T ss_pred             CCCCCEEECCCCcCC-CCh--hhcCCCCCCEEEccCCcCCcc--hhhcc-CCCCCEEEccCCccccchh---hcCCCccC
Confidence            999999999999987 443  688899999999999998754  45666 9999999999999985432   78899999


Q ss_pred             EEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccch
Q 045865          179 HFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSR  220 (225)
Q Consensus       179 ~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~  220 (225)
                      .|++++|++..   ++ .+.. +++|+.|++++|+++.....
T Consensus       182 ~L~L~~N~i~~---l~-~l~~-l~~L~~L~l~~n~i~~~~~~  218 (291)
T 1h6t_A          182 NLYLSKNHISD---LR-ALAG-LKNLDVLELFSQECLNKPIN  218 (291)
T ss_dssp             EEECCSSCCCB---CG-GGTT-CTTCSEEEEEEEEEECCCEE
T ss_pred             EEECCCCcCCC---Ch-hhcc-CCCCCEEECcCCcccCCccc
Confidence            99999997743   33 3777 99999999999999865443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.80  E-value=3.4e-20  Score=154.66  Aligned_cols=183  Identities=20%  Similarity=0.281  Sum_probs=126.2

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHH-----
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILS-----   94 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-----   94 (225)
                      .+++.|++++|.+.    .+++..|..+++|++|++++|.+.+..+      +..+++|++|++++|.+++..+.     
T Consensus        34 ~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l~~~~~L~~  103 (487)
T 3oja_A           34 WNVKELDLSGNPLS----QISAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQELLVGPSIET  103 (487)
T ss_dssp             GGCCEEECCSSCCC----CCCGGGGTTCTTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEEEEEECTTCCE
T ss_pred             CCccEEEeeCCcCC----CCCHHHHhCCCCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCCCCCCCCCcCE
Confidence            37888888888887    5666778888888888888888875332      56677777777777765432110     


Q ss_pred             -----------hhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccc
Q 045865           95 -----------SLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN  163 (225)
Q Consensus        95 -----------~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  163 (225)
                                 ....+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+.+..+..+...+++|+.|++++|.++
T Consensus       104 L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          104 LHAANNNISRVSCSRGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             EECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             EECcCCcCCCCCccccCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence                       011345677777777777644343 66777888888888888876556555522788888888888887


Q ss_pred             cccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchh
Q 045865          164 GVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRI  221 (225)
Q Consensus       164 ~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~  221 (225)
                      +. +.  ...+++|+.|++++|++.   .+|..+.. +++|+.|++++|.|++ +|..
T Consensus       183 ~~-~~--~~~l~~L~~L~Ls~N~l~---~~~~~~~~-l~~L~~L~Ls~N~l~~-lp~~  232 (487)
T 3oja_A          183 DV-KG--QVVFAKLKTLDLSSNKLA---FMGPEFQS-AAGVTWISLRNNKLVL-IEKA  232 (487)
T ss_dssp             EE-EC--CCCCTTCCEEECCSSCCC---EECGGGGG-GTTCSEEECTTSCCCE-ECTT
T ss_pred             cc-cc--cccCCCCCEEECCCCCCC---CCCHhHcC-CCCccEEEecCCcCcc-cchh
Confidence            44 22  345788888888888652   34444666 8888888888888885 4443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.80  E-value=2.1e-19  Score=155.52  Aligned_cols=143  Identities=19%  Similarity=0.249  Sum_probs=83.1

Q ss_pred             hcCCCCCEEECCCCCCC--hhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHH-------
Q 045865           73 SRLNNLKMLNLSGNSFN--NSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQ-------  143 (225)
Q Consensus        73 ~~l~~L~~L~l~~~~l~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~-------  143 (225)
                      ..++.|+.|++.+|.+.  +..|..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+.+....       
T Consensus       451 ~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  529 (680)
T 1ziw_A          451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI  529 (680)
T ss_dssp             TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCC
T ss_pred             hcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC-cCChhhhccccccCEEeCCCCCccccchhhccCCcc
Confidence            33444444444444332  234455566667777777777766 44433566677777777777766532111       


Q ss_pred             -HHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHH-HHhhcCCCCcEEEccCCcCCCccchh
Q 045865          144 -SIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQ-IIGESMPSLKYLLLSYSTLGTNSSRI  221 (225)
Q Consensus       144 -~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~-~l~~~~~~L~~L~l~~n~l~~~~~~~  221 (225)
                       .+.. +++|+.|++++|.++ .++...|.++++|+.+++++|++.   .++. .+.. +++|+.|++++|++++..|..
T Consensus       530 ~~~~~-l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~---~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~~  603 (680)
T 1ziw_A          530 YFLKG-LSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLN---TLPASVFNN-QVSLKSLNLQKNLITSVEKKV  603 (680)
T ss_dssp             CTTTT-CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTT-CTTCCEEECTTSCCCBCCHHH
T ss_pred             hhhcC-CCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCC---cCCHhHhCC-CCCCCEEECCCCcCCccChhH
Confidence             1334 667777777777766 444435677777777777777542   2332 3344 677777777777777666654


Q ss_pred             h
Q 045865          222 L  222 (225)
Q Consensus       222 ~  222 (225)
                      +
T Consensus       604 ~  604 (680)
T 1ziw_A          604 F  604 (680)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.80  E-value=9.6e-21  Score=149.76  Aligned_cols=183  Identities=20%  Similarity=0.276  Sum_probs=113.5

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHH-----
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILS-----   94 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-----   94 (225)
                      .++++|++++|.+.    .+.+..+.++++|++|++++|.+.+.. +     +..+++|++|++++|.+++..+.     
T Consensus        34 ~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~-----~~~l~~L~~L~Ls~n~l~~l~~~~~L~~  103 (317)
T 3o53_A           34 WNVKELDLSGNPLS----QISAADLAPFTKLELLNLSSNVLYETL-D-----LESLSTLRTLDLNNNYVQELLVGPSIET  103 (317)
T ss_dssp             GGCSEEECTTSCCC----CCCHHHHTTCTTCCEEECTTSCCEEEE-E-----ETTCTTCCEEECCSSEEEEEEECTTCCE
T ss_pred             CCCCEEECcCCccC----cCCHHHhhCCCcCCEEECCCCcCCcch-h-----hhhcCCCCEEECcCCccccccCCCCcCE
Confidence            36777888888776    455566777777777777777776522 2     45666777776666655431100     


Q ss_pred             -----------hhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccc
Q 045865           95 -----------SLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN  163 (225)
Q Consensus        95 -----------~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  163 (225)
                                 ....+++|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+...+++|+.|++++|.++
T Consensus       104 L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          104 LHAANNNISRVSCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             EECCSSCCSEEEECCCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             EECCCCccCCcCccccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence                       0112455666666666665 3333356667778888888887775544444322677888888888776


Q ss_pred             cccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchh
Q 045865          164 GVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRI  221 (225)
Q Consensus       164 ~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~  221 (225)
                      +. +.  ...+++|+.|++++|++.   .++..+.. +++|+.|++++|++++ +|..
T Consensus       183 ~~-~~--~~~l~~L~~L~Ls~N~l~---~l~~~~~~-l~~L~~L~L~~N~l~~-l~~~  232 (317)
T 3o53_A          183 DV-KG--QVVFAKLKTLDLSSNKLA---FMGPEFQS-AAGVTWISLRNNKLVL-IEKA  232 (317)
T ss_dssp             EE-EC--CCCCTTCCEEECCSSCCC---EECGGGGG-GTTCSEEECTTSCCCE-ECTT
T ss_pred             cc-cc--ccccccCCEEECCCCcCC---cchhhhcc-cCcccEEECcCCcccc-hhhH
Confidence            43 22  334677777777777552   33334555 7777777777777773 3433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.80  E-value=4.3e-20  Score=156.54  Aligned_cols=189  Identities=18%  Similarity=0.185  Sum_probs=126.8

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhH-Hhhh
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSIL-SSLT   97 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~   97 (225)
                      ...++.|++++|.+...  ...+..+..+++|++|++++|.+... +.    .+..+++|++|++++|.+.+..+ ..+.
T Consensus       346 ~~~L~~L~l~~n~l~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~-~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~  418 (570)
T 2z63_A          346 LPSLEFLDLSRNGLSFK--GCCSQSDFGTTSLKYLDLSFNGVITM-SS----NFLGLEQLEHLDFQHSNLKQMSEFSVFL  418 (570)
T ss_dssp             CTTCCEEECCSSCCBEE--EEEEHHHHTCSCCCEEECCSCSEEEE-EE----EEETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred             CCCCCEEeCcCCccCcc--ccccccccccCccCEEECCCCccccc-cc----cccccCCCCEEEccCCccccccchhhhh
Confidence            34666777777766521  01134456677777777777776653 22    25667777777777777655433 3566


Q ss_pred             cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCc-HHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCC
Q 045865           98 HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLH-ISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKS  176 (225)
Q Consensus        98 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  176 (225)
                      .+++|++|++++|.+....+. .+..+++|+.|++.+|.+. +..|..+.. +++|+.|++++|.+++..+. .+.++++
T Consensus       419 ~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~p~~~~~-l~~L~~L~l~~n~l~~~~~~-~~~~l~~  495 (570)
T 2z63_A          419 SLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTE-LRNLTFLDLSQCQLEQLSPT-AFNSLSS  495 (570)
T ss_dssp             TCTTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTT-CTTCCEEECTTSCCCEECTT-TTTTCTT
T ss_pred             cCCCCCEEeCcCCcccccchh-hhhcCCcCcEEECcCCcCccccchhhhhc-ccCCCEEECCCCccccCChh-hhhcccC
Confidence            777788888888877644443 6677778888888888765 334555555 78888888888887755555 7778888


Q ss_pred             CcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccch
Q 045865          177 LEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSR  220 (225)
Q Consensus       177 L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~  220 (225)
                      |+.|++++|++  .+..+..+.. +++|+.|++++|++++..|.
T Consensus       496 L~~L~l~~n~l--~~~~~~~~~~-l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          496 LQVLNMASNQL--KSVPDGIFDR-LTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CCEEECCSSCC--SCCCTTTTTT-CTTCCEEECCSSCBCCCTTT
T ss_pred             CCEEeCCCCcC--CCCCHHHhhc-ccCCcEEEecCCcccCCCcc
Confidence            88888888854  3333445666 88888888888888877663

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.79  E-value=4.6e-18  Score=135.76  Aligned_cols=174  Identities=17%  Similarity=0.293  Sum_probs=118.8

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL   99 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l   99 (225)
                      ..++.|+++++.+..    +.+  +..+++|++|++++|.+.. .+.     +..+++|+.|++++|.+....+  +..+
T Consensus       155 ~~L~~L~l~~~~~~~----~~~--~~~l~~L~~L~l~~n~l~~-~~~-----~~~l~~L~~L~l~~n~l~~~~~--~~~~  220 (347)
T 4fmz_A          155 TGLNYLTVTESKVKD----VTP--IANLTDLYSLSLNYNQIED-ISP-----LASLTSLHYFTAYVNQITDITP--VANM  220 (347)
T ss_dssp             TTCCEEECCSSCCCC----CGG--GGGCTTCSEEECTTSCCCC-CGG-----GGGCTTCCEEECCSSCCCCCGG--GGGC
T ss_pred             CCCcEEEecCCCcCC----chh--hccCCCCCEEEccCCcccc-ccc-----ccCCCccceeecccCCCCCCch--hhcC
Confidence            345555555555442    111  4556666666666666654 222     4566666666666666655333  6677


Q ss_pred             CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcE
Q 045865          100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEH  179 (225)
Q Consensus       100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  179 (225)
                      ++|++|++++|.+. ..+  .+..+++|+.|++++|.+.+.  ..+.. +++|+.|++++|.+++.  . .+..+++|+.
T Consensus       221 ~~L~~L~l~~n~l~-~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~-l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~  291 (347)
T 4fmz_A          221 TRLNSLKIGNNKIT-DLS--PLANLSQLTWLEIGTNQISDI--NAVKD-LTKLKMLNVGSNQISDI--S-VLNNLSQLNS  291 (347)
T ss_dssp             TTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCCCCC--GGGTT-CTTCCEEECCSSCCCCC--G-GGGGCTTCSE
T ss_pred             CcCCEEEccCCccC-CCc--chhcCCCCCEEECCCCccCCC--hhHhc-CCCcCEEEccCCccCCC--h-hhcCCCCCCE
Confidence            78888888888776 444  266778888888888877642  34555 78888888888888743  2 5778888999


Q ss_pred             EEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccc
Q 045865          180 FDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSS  219 (225)
Q Consensus       180 l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~  219 (225)
                      |++++|+  ..+..+..++. +++|+.|++++|++++..|
T Consensus       292 L~L~~n~--l~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          292 LFLNNNQ--LGNEDMEVIGG-LTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             EECCSSC--CCGGGHHHHHT-CTTCSEEECCSSSCCCCGG
T ss_pred             EECcCCc--CCCcChhHhhc-cccCCEEEccCCccccccC
Confidence            9999994  45566777888 9999999999999988766

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.79  E-value=2e-18  Score=144.93  Aligned_cols=71  Identities=15%  Similarity=0.203  Sum_probs=53.6

Q ss_pred             CCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchh
Q 045865          149 FPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRI  221 (225)
Q Consensus       149 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~  221 (225)
                      +++|+.|++++|.+++..+. .+.++++|+.|++++|++.....+|..++. +++|+.|++++|.+++.+|..
T Consensus       323 l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~-l~~L~~L~Ls~N~l~~~l~~~  393 (520)
T 2z7x_B          323 ISPFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQLKELSKIAEMTTQ-MKSLQQLDISQNSVSYDEKKG  393 (520)
T ss_dssp             CCCCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTT-CTTCCEEECCSSCCBCCGGGC
T ss_pred             CCcccEEEeECCccChhhhh-hhccCCCCCEEEccCCccCccccchHHHhh-CCCCCEEECCCCcCCcccccc
Confidence            56677777777777755555 777888888888888866443467777888 899999999999998755543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.79  E-value=5e-20  Score=145.16  Aligned_cols=184  Identities=18%  Similarity=0.169  Sum_probs=143.6

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChh--hH--H
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNS--IL--S   94 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~--~~--~   94 (225)
                      ...+++|++++|.+......+....+..+++|++|++++|.+....+.    .+..+++|++|++++|.+.+.  .+  .
T Consensus       116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  191 (310)
T 4glp_A          116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCE----QVRAFPALTSLDLSDNPGLGERGLMAAL  191 (310)
T ss_dssp             CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTT----SCCCCTTCCEEECCSCTTCHHHHHHTTS
T ss_pred             CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHH----HhccCCCCCEEECCCCCCccchhhhHHH
Confidence            457899999999987532223445556899999999999999886665    588999999999999998653  22  2


Q ss_pred             hhhcCCCCCEEEcCCCCCCCccchh---hhccCCCCceeecCCCCCcHHHHHHHHhhC---CCCCEEecccccccccccc
Q 045865           95 SLTHLSSLRSLNLLWNRLEGSIDVK---ELHNFTNLEYLTLESSSLHISLLQSIASIF---PSLKNLSMSFCEVNGVVRG  168 (225)
Q Consensus        95 ~l~~l~~L~~L~l~~n~~~~~~~~~---~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~  168 (225)
                      .+..+++|++|++++|.+. .++..   .+..+++|+.|++++|.+.+..|..+.. +   ++|+.|++++|.++ .+|.
T Consensus       192 ~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~-~~~~~~L~~L~Ls~N~l~-~lp~  268 (310)
T 4glp_A          192 CPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR-CMWSSALNSLNLSFAGLE-QVPK  268 (310)
T ss_dssp             CTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS-CCCCTTCCCEECCSSCCC-SCCS
T ss_pred             hhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh-ccCcCcCCEEECCCCCCC-chhh
Confidence            2357899999999999996 44321   2467899999999999998665555555 5   69999999999998 6666


Q ss_pred             CCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCc
Q 045865          169 QGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTN  217 (225)
Q Consensus       169 ~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~  217 (225)
                       .+.  ++|+.|++++|++.   .+|. +.. +++|+.|++++|+++++
T Consensus       269 -~~~--~~L~~L~Ls~N~l~---~~~~-~~~-l~~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          269 -GLP--AKLRVLDLSSNRLN---RAPQ-PDE-LPEVDNLTLDGNPFLVP  309 (310)
T ss_dssp             -CCC--SCCSCEECCSCCCC---SCCC-TTS-CCCCSCEECSSTTTSCC
T ss_pred             -hhc--CCCCEEECCCCcCC---CCch-hhh-CCCccEEECcCCCCCCC
Confidence             443  79999999999763   2232 456 99999999999999864

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.79  E-value=5.8e-19  Score=148.24  Aligned_cols=162  Identities=17%  Similarity=0.229  Sum_probs=136.4

Q ss_pred             cCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCCh--hhHHhhhcCCCCCEEEcCCCCCCCccchhhhc
Q 045865           45 TPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNN--SILSSLTHLSSLRSLNLLWNRLEGSIDVKELH  122 (225)
Q Consensus        45 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  122 (225)
                      ..+++|++|++++|.+.+..+.    .+..+++|++|++++|.+.+  ..|..+..+++|++|++++|.+.+.+|...+.
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~  396 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFE----NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS  396 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTT----TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred             hhCCcccEEEeECCccChhhhh----hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence            6789999999999999886676    58899999999999999986  45678899999999999999998557765678


Q ss_pred             cCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHH-HhhcC
Q 045865          123 NFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQI-IGESM  201 (225)
Q Consensus       123 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~-l~~~~  201 (225)
                      .+++|+.|++++|.+.+..+..+   .++|+.|++++|.++ .+|. .+..+++|+.+++++|++.   .+|.. +.. +
T Consensus       397 ~l~~L~~L~Ls~N~l~~~~~~~l---~~~L~~L~Ls~N~l~-~ip~-~~~~l~~L~~L~L~~N~l~---~l~~~~~~~-l  467 (520)
T 2z7x_B          397 WTKSLLSLNMSSNILTDTIFRCL---PPRIKVLDLHSNKIK-SIPK-QVVKLEALQELNVASNQLK---SVPDGIFDR-L  467 (520)
T ss_dssp             CCTTCCEEECCSSCCCGGGGGSC---CTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCC---CCCTTTTTT-C
T ss_pred             cCccCCEEECcCCCCCcchhhhh---cccCCEEECCCCccc-ccch-hhhcCCCCCEEECCCCcCC---ccCHHHhcc-C
Confidence            88999999999999976554322   268999999999998 6676 5569999999999999763   45554 677 9


Q ss_pred             CCCcEEEccCCcCCCccc
Q 045865          202 PSLKYLLLSYSTLGTNSS  219 (225)
Q Consensus       202 ~~L~~L~l~~n~l~~~~~  219 (225)
                      ++|+.|++++|+++...+
T Consensus       468 ~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          468 TSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             TTCCEEECCSSCBCCCHH
T ss_pred             CcccEEECcCCCCcccCC
Confidence            999999999999998765

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.78  E-value=1.4e-18  Score=138.81  Aligned_cols=172  Identities=14%  Similarity=0.202  Sum_probs=141.8

Q ss_pred             CcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhh
Q 045865           18 TTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT   97 (225)
Q Consensus        18 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~   97 (225)
                      ....+++|++++|.+.    .+.+  +..+++|+.|++++|.+... +.     +..+++|++|++++|.++...+  +.
T Consensus       175 ~l~~L~~L~l~~n~l~----~~~~--~~~l~~L~~L~l~~n~l~~~-~~-----~~~~~~L~~L~l~~n~l~~~~~--~~  240 (347)
T 4fmz_A          175 NLTDLYSLSLNYNQIE----DISP--LASLTSLHYFTAYVNQITDI-TP-----VANMTRLNSLKIGNNKITDLSP--LA  240 (347)
T ss_dssp             GCTTCSEEECTTSCCC----CCGG--GGGCTTCCEEECCSSCCCCC-GG-----GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred             cCCCCCEEEccCCccc----cccc--ccCCCccceeecccCCCCCC-ch-----hhcCCcCCEEEccCCccCCCcc--hh
Confidence            3468999999999987    3333  78899999999999998863 32     6789999999999999987544  88


Q ss_pred             cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCC
Q 045865           98 HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSL  177 (225)
Q Consensus        98 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L  177 (225)
                      .+++|++|++++|.+. .++  .+..+++|+.|++++|.+.+.  ..+.. +++|+.|++++|.+++..+. .+..+++|
T Consensus       241 ~l~~L~~L~l~~n~l~-~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~-l~~L~~L~L~~n~l~~~~~~-~l~~l~~L  313 (347)
T 4fmz_A          241 NLSQLTWLEIGTNQIS-DIN--AVKDLTKLKMLNVGSNQISDI--SVLNN-LSQLNSLFLNNNQLGNEDME-VIGGLTNL  313 (347)
T ss_dssp             TCTTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCCCCC--GGGGG-CTTCSEEECCSSCCCGGGHH-HHHTCTTC
T ss_pred             cCCCCCEEECCCCccC-CCh--hHhcCCCcCEEEccCCccCCC--hhhcC-CCCCCEEECcCCcCCCcChh-HhhccccC
Confidence            9999999999999987 443  688899999999999998753  34566 99999999999999866666 78899999


Q ss_pred             cEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCC
Q 045865          178 EHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLG  215 (225)
Q Consensus       178 ~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~  215 (225)
                      +.+++++|++  .+..|  +.. +++|+.|++++|+|+
T Consensus       314 ~~L~L~~n~l--~~~~~--~~~-l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          314 TTLFLSQNHI--TDIRP--LAS-LSKMDSADFANQVIK  346 (347)
T ss_dssp             SEEECCSSSC--CCCGG--GGG-CTTCSEESSSCC---
T ss_pred             CEEEccCCcc--ccccC--hhh-hhccceeehhhhccc
Confidence            9999999965  33333  777 999999999999986

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.78  E-value=1.2e-19  Score=153.90  Aligned_cols=169  Identities=19%  Similarity=0.232  Sum_probs=138.7

Q ss_pred             cCCCCccEEEccCCcccCcc--hhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhc
Q 045865           45 TPFQQLESLDLTQNKIAGCV--ENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELH  122 (225)
Q Consensus        45 ~~l~~L~~L~l~~n~i~~~~--~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  122 (225)
                      ..+++|++|++++|.+....  +.    .+..+++|++|++++|.+....+. +..+++|++|++++|.+.+..+...+.
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~  418 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQ----SDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFL  418 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEH----HHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred             ccCCCCCEEeCcCCccCccccccc----cccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhh
Confidence            56788889999988887643  34    578899999999999988774444 888999999999999887554434678


Q ss_pred             cCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccc-cccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcC
Q 045865          123 NFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN-GVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESM  201 (225)
Q Consensus       123 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~  201 (225)
                      .+++|+.|++++|.+.+..+..+.. +++|+.|++++|.++ +..|. .+..+++|+.|++++|++  .+..|..+.. +
T Consensus       419 ~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~l--~~~~~~~~~~-l  493 (570)
T 2z63_A          419 SLRNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQL--EQLSPTAFNS-L  493 (570)
T ss_dssp             TCTTCCEEECTTSCCEECCTTTTTT-CTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSCC--CEECTTTTTT-C
T ss_pred             cCCCCCEEeCcCCcccccchhhhhc-CCcCcEEECcCCcCccccchh-hhhcccCCCEEECCCCcc--ccCChhhhhc-c
Confidence            8899999999999987666666777 999999999999987 45666 899999999999999954  4555777888 9


Q ss_pred             CCCcEEEccCCcCCCccchhhc
Q 045865          202 PSLKYLLLSYSTLGTNSSRILH  223 (225)
Q Consensus       202 ~~L~~L~l~~n~l~~~~~~~~~  223 (225)
                      ++|+.|++++|++++.+|..|.
T Consensus       494 ~~L~~L~l~~n~l~~~~~~~~~  515 (570)
T 2z63_A          494 SSLQVLNMASNQLKSVPDGIFD  515 (570)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTT
T ss_pred             cCCCEEeCCCCcCCCCCHHHhh
Confidence            9999999999999998887664

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.78  E-value=1.1e-19  Score=160.09  Aligned_cols=188  Identities=14%  Similarity=0.259  Sum_probs=144.2

Q ss_pred             cCceEEeeccccccccch----h---------HHhhhhhc--CCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEEC
Q 045865           19 TGRVIALDLSYIYSGEYS----W---------YLNASLFT--PFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNL   83 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~----~---------~~~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l   83 (225)
                      ..+++.|++++|.+....    |         ...+..+.  ++++|++|++++|.+.+..|.    .+..+++|+.|++
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~----~l~~L~~L~~L~L  522 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD----FLYDLPELQSLNI  522 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG----GGGGCSSCCEEEC
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH----HHhCCCCCCEEEC
Confidence            467899999999987310    0         01334444  899999999999998887887    6899999999999


Q ss_pred             CCCC-CCh-hhHHhhhcCC-------CCCEEEcCCCCCCCccch-hhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCC
Q 045865           84 SGNS-FNN-SILSSLTHLS-------SLRSLNLLWNRLEGSIDV-KELHNFTNLEYLTLESSSLHISLLQSIASIFPSLK  153 (225)
Q Consensus        84 ~~~~-l~~-~~~~~l~~l~-------~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~  153 (225)
                      ++|. +++ .+|..+..+.       +|+.|++++|.+. .+|. ..+..+++|+.|++++|.+. .+| .+.. +++|+
T Consensus       523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~-L~~L~  598 (876)
T 4ecn_A          523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGT-NVKLT  598 (876)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCT-TSEES
T ss_pred             cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcC-CCcce
Confidence            9998 887 6777666554       9999999999987 6663 36788899999999999887 555 5666 88899


Q ss_pred             EEeccccccccccccCCCCCCCC-CcEEEccCCccccchhHHHHHhhcCC--CCcEEEccCCcCCCccch
Q 045865          154 NLSMSFCEVNGVVRGQGFPHFKS-LEHFDMRFARIALNTSFLQIIGESMP--SLKYLLLSYSTLGTNSSR  220 (225)
Q Consensus       154 ~L~l~~n~~~~~~~~~~~~~~~~-L~~l~l~~n~i~~~~~~~~~l~~~~~--~L~~L~l~~n~l~~~~~~  220 (225)
                      .|++++|.++ .+|. .+.++++ |+.|++++|++.   .+|..+.. ++  +|+.|++++|++++.+|.
T Consensus       599 ~L~Ls~N~l~-~lp~-~l~~l~~~L~~L~Ls~N~L~---~lp~~~~~-~~~~~L~~L~Ls~N~l~g~ip~  662 (876)
T 4ecn_A          599 DLKLDYNQIE-EIPE-DFCAFTDQVEGLGFSHNKLK---YIPNIFNA-KSVYVMGSVDFSYNKIGSEGRN  662 (876)
T ss_dssp             EEECCSSCCS-CCCT-TSCEECTTCCEEECCSSCCC---SCCSCCCT-TCSSCEEEEECCSSCTTTTSSS
T ss_pred             EEECcCCccc-cchH-HHhhccccCCEEECcCCCCC---cCchhhhc-cccCCCCEEECcCCcCCCcccc
Confidence            9999999887 6676 6888888 999999988652   55554444 43  377777777777776554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.78  E-value=9.7e-19  Score=144.68  Aligned_cols=198  Identities=20%  Similarity=0.094  Sum_probs=115.4

Q ss_pred             ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHH-hcCCCCCEEECCCCCCChh----hHHh
Q 045865           21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERL-SRLNNLKMLNLSGNSFNNS----ILSS   95 (225)
Q Consensus        21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~~----~~~~   95 (225)
                      .+++|++++|.+...++...+..+..+++|++|++++|.+...........+ ..+++|++|++++|.++..    ++..
T Consensus       200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  279 (461)
T 1z7x_W          200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV  279 (461)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence            4555555555554332233344455566666666666655432221111111 2356666777766666553    3445


Q ss_pred             hhcCCCCCEEEcCCCCCCCccchhhhc-----cCCCCceeecCCCCCcHH----HHHHHHhhCCCCCEEecccccccccc
Q 045865           96 LTHLSSLRSLNLLWNRLEGSIDVKELH-----NFTNLEYLTLESSSLHIS----LLQSIASIFPSLKNLSMSFCEVNGVV  166 (225)
Q Consensus        96 l~~l~~L~~L~l~~n~~~~~~~~~~~~-----~l~~L~~l~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~  166 (225)
                      +..+++|++|++++|.+.+..+. .+.     ..++|+.|++++|.+.+.    ++..+.. +++|+.|++++|.+++..
T Consensus       280 l~~~~~L~~L~Ls~n~i~~~~~~-~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~  357 (461)
T 1z7x_W          280 LRAKESLKELSLAGNELGDEGAR-LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ-NRFLLELQISNNRLEDAG  357 (461)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHH-HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH-CSSCCEEECCSSBCHHHH
T ss_pred             HhhCCCcceEECCCCCCchHHHH-HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhh-CCCccEEEccCCcccccc
Confidence            55567777777777766422111 221     124677777777776643    3455555 788888888888776443


Q ss_pred             cc---CCCC-CCCCCcEEEccCCccccc--hhHHHHHhhcCCCCcEEEccCCcCCCccchh
Q 045865          167 RG---QGFP-HFKSLEHFDMRFARIALN--TSFLQIIGESMPSLKYLLLSYSTLGTNSSRI  221 (225)
Q Consensus       167 ~~---~~~~-~~~~L~~l~l~~n~i~~~--~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~  221 (225)
                      +.   ..+. ..++|+.|++++|++...  ..++..+.. +++|+.|++++|++++.....
T Consensus       358 ~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~l~~N~i~~~~~~~  417 (461)
T 1z7x_W          358 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA-NHSLRELDLSNNCLGDAGILQ  417 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CCCCCEEECCSSSCCHHHHHH
T ss_pred             HHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHh-CCCccEEECCCCCCCHHHHHH
Confidence            32   0122 256888888888855221  166777888 889999999999888764433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.77  E-value=8.5e-19  Score=148.68  Aligned_cols=161  Identities=20%  Similarity=0.267  Sum_probs=134.2

Q ss_pred             cCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCCh--hhHHhhhcCCCCCEEEcCCCCCCCccchhhhc
Q 045865           45 TPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNN--SILSSLTHLSSLRSLNLLWNRLEGSIDVKELH  122 (225)
Q Consensus        45 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  122 (225)
                      ..+++|++|++++|.+.+..+.    .+..+++|++|++++|.+++  ..+..+..+++|++|++++|.+.+.++...+.
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  425 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQ----GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA  425 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTT----TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC
T ss_pred             cCCCCceEEECCCCccccchhh----hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc
Confidence            5778999999999999886666    58899999999999999986  34677889999999999999998547765678


Q ss_pred             cCCCCceeecCCCCCcHHHHHHHHhhC-CCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHH-Hhhc
Q 045865          123 NFTNLEYLTLESSSLHISLLQSIASIF-PSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQI-IGES  200 (225)
Q Consensus       123 ~l~~L~~l~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~-l~~~  200 (225)
                      .+++|+.|++++|.+.+..+..    + ++|+.|++++|.++ .+|. .+.++++|+.|++++|++.   .+|.. +.. 
T Consensus       426 ~l~~L~~L~l~~n~l~~~~~~~----l~~~L~~L~L~~N~l~-~ip~-~~~~l~~L~~L~L~~N~l~---~l~~~~~~~-  495 (562)
T 3a79_B          426 WAESILVLNLSSNMLTGSVFRC----LPPKVKVLDLHNNRIM-SIPK-DVTHLQALQELNVASNQLK---SVPDGVFDR-  495 (562)
T ss_dssp             CCTTCCEEECCSSCCCGGGGSS----CCTTCSEEECCSSCCC-CCCT-TTTSSCCCSEEECCSSCCC---CCCTTSTTT-
T ss_pred             CcccCCEEECCCCCCCcchhhh----hcCcCCEEECCCCcCc-ccCh-hhcCCCCCCEEECCCCCCC---CCCHHHHhc-
Confidence            8899999999999987654432    4 68999999999998 6676 5559999999999999663   45655 777 


Q ss_pred             CCCCcEEEccCCcCCCccc
Q 045865          201 MPSLKYLLLSYSTLGTNSS  219 (225)
Q Consensus       201 ~~~L~~L~l~~n~l~~~~~  219 (225)
                      +++|+.|++++|++++..+
T Consensus       496 l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          496 LTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CTTCCCEECCSCCBCCCHH
T ss_pred             CCCCCEEEecCCCcCCCcc
Confidence            9999999999999998665

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=1.5e-18  Score=147.96  Aligned_cols=174  Identities=20%  Similarity=0.242  Sum_probs=145.6

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH   98 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~   98 (225)
                      ...++.|+++++.+.    .++  .+..+++|+.|++++|.+.. .++     +..+++|+.|++++|.+...  ..+..
T Consensus        42 L~~L~~L~l~~n~i~----~l~--~l~~l~~L~~L~Ls~N~l~~-~~~-----l~~l~~L~~L~Ls~N~l~~l--~~l~~  107 (605)
T 1m9s_A           42 LNSIDQIIANNSDIK----SVQ--GIQYLPNVTKLFLNGNKLTD-IKP-----LTNLKNLGWLFLDENKIKDL--SSLKD  107 (605)
T ss_dssp             HTTCCCCBCTTCCCC----CCT--TGGGCTTCCEEECTTSCCCC-CGG-----GGGCTTCCEEECCSSCCCCC--TTSTT
T ss_pred             CCCCCEEECcCCCCC----CCh--HHccCCCCCEEEeeCCCCCC-Chh-----hccCCCCCEEECcCCCCCCC--hhhcc
Confidence            467899999999987    343  47889999999999999987 333     78999999999999999773  36888


Q ss_pred             CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc
Q 045865           99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE  178 (225)
Q Consensus        99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  178 (225)
                      +++|+.|++++|.+. .++  .+..+++|+.|+|++|.+.+.  ..+.. +++|+.|++++|.+.+..+   +..+++|+
T Consensus       108 l~~L~~L~Ls~N~l~-~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~-l~~L~~L~Ls~N~l~~~~~---l~~l~~L~  178 (605)
T 1m9s_A          108 LKKLKSLSLEHNGIS-DIN--GLVHLPQLESLYLGNNKITDI--TVLSR-LTKLDTLSLEDNQISDIVP---LAGLTKLQ  178 (605)
T ss_dssp             CTTCCEEECTTSCCC-CCG--GGGGCTTCSEEECCSSCCCCC--GGGGS-CTTCSEEECCSSCCCCCGG---GTTCTTCC
T ss_pred             CCCCCEEEecCCCCC-CCc--cccCCCccCEEECCCCccCCc--hhhcc-cCCCCEEECcCCcCCCchh---hccCCCCC
Confidence            999999999999997 443  688899999999999998754  45666 9999999999999985543   78899999


Q ss_pred             EEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccch
Q 045865          179 HFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSR  220 (225)
Q Consensus       179 ~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~  220 (225)
                      .|++++|+|..   + ..+.. +++|+.|+|++|++++.+..
T Consensus       179 ~L~Ls~N~i~~---l-~~l~~-l~~L~~L~L~~N~l~~~p~~  215 (605)
T 1m9s_A          179 NLYLSKNHISD---L-RALAG-LKNLDVLELFSQECLNKPIN  215 (605)
T ss_dssp             EEECCSSCCCB---C-GGGTT-CTTCSEEECCSEEEECCCCC
T ss_pred             EEECcCCCCCC---C-hHHcc-CCCCCEEEccCCcCcCCccc
Confidence            99999997643   3 34777 99999999999999876443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.77  E-value=2.9e-18  Score=145.44  Aligned_cols=105  Identities=28%  Similarity=0.324  Sum_probs=71.0

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL   99 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l   99 (225)
                      ..+++|++++|.+.    .+++..|.++++|++|++++|.+....+.    .|..+++|++|++++|.++. +|..  .+
T Consensus        52 ~~L~~L~Ls~N~i~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~-lp~~--~l  120 (562)
T 3a79_B           52 PRTKALSLSQNSIS----ELRMPDISFLSELRVLRLSHNRIRSLDFH----VFLFNQDLEYLDVSHNRLQN-ISCC--PM  120 (562)
T ss_dssp             TTCCEEECCSSCCC----CCCGGGTTTCTTCCEEECCSCCCCEECTT----TTTTCTTCCEEECTTSCCCE-ECSC--CC
T ss_pred             CCcCEEECCCCCcc----ccChhhhccCCCccEEECCCCCCCcCCHH----HhCCCCCCCEEECCCCcCCc-cCcc--cc
Confidence            57888889888887    56667788888888888888888875555    57778888888888887764 3332  56


Q ss_pred             CCCCEEEcCCCCCCCc-cchhhhccCCCCceeecCCCC
Q 045865          100 SSLRSLNLLWNRLEGS-IDVKELHNFTNLEYLTLESSS  136 (225)
Q Consensus       100 ~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~l~l~~~~  136 (225)
                      ++|++|++++|.+... .|. .+..+++|+.|++++|.
T Consensus       121 ~~L~~L~Ls~N~l~~l~~p~-~~~~l~~L~~L~L~~n~  157 (562)
T 3a79_B          121 ASLRHLDLSFNDFDVLPVCK-EFGNLTKLTFLGLSAAK  157 (562)
T ss_dssp             TTCSEEECCSSCCSBCCCCG-GGGGCTTCCEEEEECSB
T ss_pred             ccCCEEECCCCCccccCchH-hhcccCcccEEecCCCc
Confidence            6666666666666521 122 45555555555544443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.77  E-value=1.4e-18  Score=128.20  Aligned_cols=154  Identities=18%  Similarity=0.333  Sum_probs=126.4

Q ss_pred             cCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccC
Q 045865           45 TPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNF  124 (225)
Q Consensus        45 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l  124 (225)
                      ..+++|+.|++++|.+.. .+.     +..+++|++|++++|.++.  +..+..+++|++|++++|.+.+..+. .+..+
T Consensus        41 ~~l~~L~~L~l~~n~i~~-l~~-----l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l  111 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTD-LTG-----IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIP-NLSGL  111 (197)
T ss_dssp             HHHHTCCEEEEESSCCSC-CTT-----GGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSC-CCTTC
T ss_pred             hhcCCccEEeccCCCccC-hHH-----HhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccCh-hhcCC
Confidence            446789999999999985 443     7889999999999997765  34788899999999999999754554 78889


Q ss_pred             CCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccc-cccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCC
Q 045865          125 TNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCE-VNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPS  203 (225)
Q Consensus       125 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~  203 (225)
                      ++|+.|++++|.+.+..+..+.. +++|+.|++++|. ++ ..+  .+.++++|+.|++++|++..   ++ .+.. +++
T Consensus       112 ~~L~~L~Ls~n~i~~~~~~~l~~-l~~L~~L~L~~n~~i~-~~~--~l~~l~~L~~L~l~~n~i~~---~~-~l~~-l~~  182 (197)
T 4ezg_A          112 TSLTLLDISHSAHDDSILTKINT-LPKVNSIDLSYNGAIT-DIM--PLKTLPELKSLNIQFDGVHD---YR-GIED-FPK  182 (197)
T ss_dssp             TTCCEEECCSSBCBGGGHHHHTT-CSSCCEEECCSCTBCC-CCG--GGGGCSSCCEEECTTBCCCC---CT-TGGG-CSS
T ss_pred             CCCCEEEecCCccCcHhHHHHhh-CCCCCEEEccCCCCcc-ccH--hhcCCCCCCEEECCCCCCcC---hH-Hhcc-CCC
Confidence            99999999999998777888888 9999999999998 65 443  58889999999999997633   33 5777 999


Q ss_pred             CcEEEccCCcCCC
Q 045865          204 LKYLLLSYSTLGT  216 (225)
Q Consensus       204 L~~L~l~~n~l~~  216 (225)
                      |+.|++++|++.+
T Consensus       183 L~~L~l~~N~i~~  195 (197)
T 4ezg_A          183 LNQLYAFSQTIGG  195 (197)
T ss_dssp             CCEEEECBC----
T ss_pred             CCEEEeeCcccCC
Confidence            9999999999874

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.77  E-value=8.3e-19  Score=138.62  Aligned_cols=183  Identities=21%  Similarity=0.171  Sum_probs=142.1

Q ss_pred             ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCC
Q 045865           21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS  100 (225)
Q Consensus        21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~  100 (225)
                      .++..+++.+.+.    +.....+..+++|++|++++|.+....+.    .+..+++|++|++++|.+++..+  +..++
T Consensus        11 ~l~i~~ls~~~l~----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~   80 (317)
T 3o53_A           11 RYKIEKVTDSSLK----QALASLRQSAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYETLD--LESLS   80 (317)
T ss_dssp             EEEEESCCTTTHH----HHHHHHHTTGGGCSEEECTTSCCCCCCHH----HHTTCTTCCEEECTTSCCEEEEE--ETTCT
T ss_pred             ceeEeeccccchh----hhHHHHhccCCCCCEEECcCCccCcCCHH----HhhCCCcCCEEECCCCcCCcchh--hhhcC
Confidence            4566778887776    66777778889999999999999986666    68999999999999999976544  78889


Q ss_pred             CCCEEEcCCCCCCCccch-h---------------hhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEecccccccc
Q 045865          101 SLRSLNLLWNRLEGSIDV-K---------------ELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNG  164 (225)
Q Consensus       101 ~L~~L~l~~n~~~~~~~~-~---------------~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  164 (225)
                      +|++|++++|.+. .++. .               ....+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+++
T Consensus        81 ~L~~L~Ls~n~l~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~  158 (317)
T 3o53_A           81 TLRTLDLNNNYVQ-ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDT  158 (317)
T ss_dssp             TCCEEECCSSEEE-EEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGG-GSSEEEEECTTSCCCE
T ss_pred             CCCEEECcCCccc-cccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhc-cCCCCEEECCCCCCCc
Confidence            9999999988775 2221 0               1123567888899999887655556666 8999999999999986


Q ss_pred             ccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccch
Q 045865          165 VVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSR  220 (225)
Q Consensus       165 ~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~  220 (225)
                      ..+...+..+++|+.|++++|++...   + .... +++|+.|++++|++++.++.
T Consensus       159 ~~~~~~~~~l~~L~~L~L~~N~l~~~---~-~~~~-l~~L~~L~Ls~N~l~~l~~~  209 (317)
T 3o53_A          159 VNFAELAASSDTLEHLNLQYNFIYDV---K-GQVV-FAKLKTLDLSSNKLAFMGPE  209 (317)
T ss_dssp             EEGGGGGGGTTTCCEEECTTSCCCEE---E-CCCC-CTTCCEEECCSSCCCEECGG
T ss_pred             ccHHHHhhccCcCCEEECCCCcCccc---c-cccc-cccCCEEECCCCcCCcchhh
Confidence            65552335789999999999976332   2 2334 89999999999999976554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.77  E-value=1.5e-18  Score=146.56  Aligned_cols=185  Identities=18%  Similarity=0.200  Sum_probs=104.3

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhH--Hhhh
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSIL--SSLT   97 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~--~~l~   97 (225)
                      +.+++|++++|.+.    .++...+.++++|++|++++|.+.+..+.. ...+..+++|++|++++|.++...+  ..+.
T Consensus       310 ~~L~~L~l~~n~l~----~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  384 (549)
T 2z81_A          310 EKVKRITVENSKVF----LVPCSFSQHLKSLEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRSMQKTGEILL  384 (549)
T ss_dssp             TTCCEEEEESSCCC----CCCHHHHHHCTTCCEEECCSSCCCHHHHHH-HTCTTSSTTCCEEECTTSCCCCHHHHHHHGG
T ss_pred             ccceEEEeccCccc----cCCHHHHhcCccccEEEccCCccccccccc-hhhhhccccCcEEEccCCcccccccchhhhh
Confidence            35666677766665    445555556777777777777776533320 0024566777777777777765432  4466


Q ss_pred             cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHH------------------HhhCCCCCEEeccc
Q 045865           98 HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSI------------------ASIFPSLKNLSMSF  159 (225)
Q Consensus        98 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~------------------~~~~~~L~~L~l~~  159 (225)
                      .+++|++|++++|.+. .+|. .+..+++|+.|++++|.+.. ++..+                  .. +++|+.|++++
T Consensus       385 ~l~~L~~L~Ls~N~l~-~lp~-~~~~~~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~-l~~L~~L~Ls~  460 (549)
T 2z81_A          385 TLKNLTSLDISRNTFH-PMPD-SCQWPEKMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLF-LPRLQELYISR  460 (549)
T ss_dssp             GCTTCCEEECTTCCCC-CCCS-CCCCCTTCCEEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCC-CTTCCEEECCS
T ss_pred             cCCCCCEEECCCCCCc-cCCh-hhcccccccEEECCCCCccc-ccchhcCCceEEECCCCChhhhccc-CChhcEEECCC
Confidence            6777777777777765 5554 45555666666666665542 11110                  12 45555555555


Q ss_pred             cccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccc
Q 045865          160 CEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSS  219 (225)
Q Consensus       160 n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~  219 (225)
                      |.++ .+|.  ...+++|+.|++++|++  .+..+..+.. +++|+.|++++|++++..|
T Consensus       461 N~l~-~ip~--~~~l~~L~~L~Ls~N~l--~~~~~~~~~~-l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          461 NKLK-TLPD--ASLFPVLLVMKISRNQL--KSVPDGIFDR-LTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             SCCS-SCCC--GGGCTTCCEEECCSSCC--CCCCTTGGGG-CTTCCEEECCSSCBCCCHH
T ss_pred             CccC-cCCC--cccCccCCEEecCCCcc--CCcCHHHHhc-CcccCEEEecCCCccCCCc
Confidence            5554 3333  23455566666666633  2333334555 6666666666666665555

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.77  E-value=3.4e-19  Score=157.68  Aligned_cols=68  Identities=25%  Similarity=0.305  Sum_probs=36.3

Q ss_pred             CCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865          151 SLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL  222 (225)
Q Consensus       151 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~  222 (225)
                      +|+.|++++|.+.+..+. .+..+++|+.|++++|++  .+..+..+.. +++|+.|++++|.+++..|..|
T Consensus       267 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~i--~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~  334 (844)
T 3j0a_A          267 SVRHLDLSHGFVFSLNSR-VFETLKDLKVLNLAYNKI--NKIADEAFYG-LDNLQVLNLSYNLLGELYSSNF  334 (844)
T ss_dssp             CCCEEECTTCCCCEECSC-CSSSCCCCCEEEEESCCC--CEECTTTTTT-CSSCCEEEEESCCCSCCCSCSC
T ss_pred             CccEEECCCCcccccChh-hhhcCCCCCEEECCCCcC--CCCChHHhcC-CCCCCEEECCCCCCCccCHHHh
Confidence            455555555554433333 555666666666666643  2233344555 6666666666666665555443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.77  E-value=4.7e-18  Score=140.57  Aligned_cols=198  Identities=21%  Similarity=0.171  Sum_probs=108.8

Q ss_pred             ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHH-hcCCCCCEEECCCCCCChh----hHHh
Q 045865           21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERL-SRLNNLKMLNLSGNSFNNS----ILSS   95 (225)
Q Consensus        21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~~----~~~~   95 (225)
                      ++++|++++|++...++...+..+..+++|++|++++|.+....+......+ ...++|++|++++|.++..    ++..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            4666666666666444444555666666777777776666543333211111 1244566666666666542    2444


Q ss_pred             hhcCCCCCEEEcCCCCCCCccchhhhc-----cCCCCceeecCCCCCcHH----HHHHHHhhCCCCCEEecccccccccc
Q 045865           96 LTHLSSLRSLNLLWNRLEGSIDVKELH-----NFTNLEYLTLESSSLHIS----LLQSIASIFPSLKNLSMSFCEVNGVV  166 (225)
Q Consensus        96 l~~l~~L~~L~l~~n~~~~~~~~~~~~-----~l~~L~~l~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~  166 (225)
                      +..+++|++|++++|.+.+..+. .+.     ..++|+.|++++|.+.+.    ++..+.. +++|++|++++|.+++..
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~-~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~~~  243 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVR-VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS-KASLRELALGSNKLGDVG  243 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHH-HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHH-CTTCCEEECCSSBCHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHH-HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHh-CCCccEEeccCCcCChHH
Confidence            55566677777766665422111 221     234666777776666542    3445555 677777777777665321


Q ss_pred             c----cCCCCCCCCCcEEEccCCccccch--hHHHHHhhcCCCCcEEEccCCcCCCccchh
Q 045865          167 R----GQGFPHFKSLEHFDMRFARIALNT--SFLQIIGESMPSLKYLLLSYSTLGTNSSRI  221 (225)
Q Consensus       167 ~----~~~~~~~~~L~~l~l~~n~i~~~~--~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~  221 (225)
                      .    ...+..+++|+.|++++|++...+  .++..+.. +++|+.|++++|.+++..+..
T Consensus       244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~  303 (461)
T 1z7x_W          244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA-KESLKELSLAGNELGDEGARL  303 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CTTCCEEECTTCCCHHHHHHH
T ss_pred             HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhh-CCCcceEECCCCCCchHHHHH
Confidence            1    112334666777777777442211  15556666 777777777777766544433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.77  E-value=2.2e-19  Score=153.70  Aligned_cols=139  Identities=23%  Similarity=0.307  Sum_probs=113.5

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH   98 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~   98 (225)
                      +..+++|+|++|++.    .+++..|.++++|++|++++|.|....+.    .|..+++|++|++++|.++...+..|..
T Consensus        51 p~~~~~LdLs~N~i~----~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~----~f~~L~~L~~L~Ls~N~l~~l~~~~f~~  122 (635)
T 4g8a_A           51 PFSTKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLALGAFSG  122 (635)
T ss_dssp             CTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred             CcCCCEEEeeCCCCC----CCCHHHHhCCCCCCEEECCCCcCCCcChh----HhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence            357889999999987    77888889999999999999998875555    5888999999999999998877778889


Q ss_pred             CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHH-HHHHHHhhCCCCCEEeccccccccccc
Q 045865           99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHIS-LLQSIASIFPSLKNLSMSFCEVNGVVR  167 (225)
Q Consensus        99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~  167 (225)
                      +.+|++|++++|.+. .++...+..+++|+.|++++|.+... .+..+.. +++|+.|++++|.+++..+
T Consensus       123 L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~  190 (635)
T 4g8a_A          123 LSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYC  190 (635)
T ss_dssp             CTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-CTTCCEEECCSSCCCEECG
T ss_pred             CCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhcc-chhhhhhcccCcccccccc
Confidence            999999999999887 55544688889999999999887642 3455666 8899999999998875433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.76  E-value=1.7e-17  Score=137.64  Aligned_cols=106  Identities=22%  Similarity=0.291  Sum_probs=49.5

Q ss_pred             hcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCC
Q 045865           97 THLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKS  176 (225)
Q Consensus        97 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  176 (225)
                      ..+++|+.|++++|.+. .++  .+..+++|+.|++++|.+.+..+  +.. +++|+.|++++|.+++.  . .+.++++
T Consensus       284 ~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~L~~n~l~~~~~--~~~-l~~L~~L~l~~n~l~~~--~-~l~~l~~  354 (466)
T 1o6v_A          284 AGLTALTNLELNENQLE-DIS--PISNLKNLTYLTLYFNNISDISP--VSS-LTKLQRLFFYNNKVSDV--S-SLANLTN  354 (466)
T ss_dssp             TTCTTCSEEECCSSCCS-CCG--GGGGCTTCSEEECCSSCCSCCGG--GGG-CTTCCEEECCSSCCCCC--G-GGTTCTT
T ss_pred             cCCCccCeEEcCCCccc-Cch--hhcCCCCCCEEECcCCcCCCchh--hcc-CccCCEeECCCCccCCc--h-hhccCCC
Confidence            33444444444444433 121  13344445555555554443322  233 45555555555554432  1 3455555


Q ss_pred             CcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCC
Q 045865          177 LEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGT  216 (225)
Q Consensus       177 L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~  216 (225)
                      |+.+++++|++  .+..|  +.. +++|+.|++++|++++
T Consensus       355 L~~L~l~~n~l--~~~~~--~~~-l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          355 INWLSAGHNQI--SDLTP--LAN-LTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CCEEECCSSCC--CBCGG--GTT-CTTCCEEECCCEEEEC
T ss_pred             CCEEeCCCCcc--Cccch--hhc-CCCCCEEeccCCcccC
Confidence            66666666633  22222  444 6666666666666655

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=1.7e-18  Score=129.88  Aligned_cols=153  Identities=17%  Similarity=0.233  Sum_probs=128.2

Q ss_pred             EEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCC
Q 045865           23 IALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL  102 (225)
Q Consensus        23 ~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L  102 (225)
                      +.++.+++++.    .++...   .+.+++|++++|.+....+.    .|..+++|++|++++|.+....+..|..+++|
T Consensus        14 ~~v~c~~~~l~----~iP~~l---~~~l~~L~l~~n~i~~i~~~----~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L   82 (220)
T 2v9t_B           14 NIVDCRGKGLT----EIPTNL---PETITEIRLEQNTIKVIPPG----AFSPYKKLRRIDLSNNQISELAPDAFQGLRSL   82 (220)
T ss_dssp             TEEECTTSCCS----SCCSSC---CTTCCEEECCSSCCCEECTT----SSTTCTTCCEEECCSSCCCEECTTTTTTCSSC
T ss_pred             CEEEcCCCCcC----cCCCcc---CcCCCEEECCCCcCCCcCHh----HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC
Confidence            46788888776    444432   25789999999999875554    58889999999999999998888999999999


Q ss_pred             CEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEc
Q 045865          103 RSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDM  182 (225)
Q Consensus       103 ~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l  182 (225)
                      ++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+++..+. .+..+++|+.+++
T Consensus        83 ~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L  159 (220)
T 2v9t_B           83 NSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQD-LHNLNLLSLYDNKLQTIAKG-TFSPLRAIQTMHL  159 (220)
T ss_dssp             CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEEC
T ss_pred             CEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCC-CCCCCEEECCCCcCCEECHH-HHhCCCCCCEEEe
Confidence            99999999998 666656788999999999999998666666777 99999999999999855544 7899999999999


Q ss_pred             cCCcccc
Q 045865          183 RFARIAL  189 (225)
Q Consensus       183 ~~n~i~~  189 (225)
                      ++|++..
T Consensus       160 ~~N~~~c  166 (220)
T 2v9t_B          160 AQNPFIC  166 (220)
T ss_dssp             CSSCEEC
T ss_pred             CCCCcCC
Confidence            9997644

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.76  E-value=4e-19  Score=148.20  Aligned_cols=188  Identities=18%  Similarity=0.119  Sum_probs=137.1

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHH------------HHHhcCCCCCEEECCCC
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGI------------ERLSRLNNLKMLNLSGN   86 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~------------~~~~~l~~L~~L~l~~~   86 (225)
                      ...++.|++++|.+..    .++  +..+++|++|++++|.+.+..+..-.            .....+++|+.|++++|
T Consensus        57 l~~L~~L~Ls~N~l~~----~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N  130 (487)
T 3oja_A           57 FTKLELLNLSSNVLYE----TLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN  130 (487)
T ss_dssp             CTTCCEEECTTSCCEE----EEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSS
T ss_pred             CCCCCEEEeeCCCCCC----Ccc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCC
Confidence            4567778888877752    222  56667777777766665432110000            00123578889999999


Q ss_pred             CCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhc-cCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccc
Q 045865           87 SFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELH-NFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGV  165 (225)
Q Consensus        87 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  165 (225)
                      .+++..+..+..+++|+.|++++|.+.+..+. .+. .+++|+.|++++|.+.+. + .... +++|+.|++++|.+++ 
T Consensus       131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~-l~~L~~L~Ls~N~l~~-  205 (487)
T 3oja_A          131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-ELAASSDTLEHLNLQYNFIYDV-K-GQVV-FAKLKTLDLSSNKLAF-  205 (487)
T ss_dssp             CCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG-GGGGGTTTCCEEECTTSCCCEE-E-CCCC-CTTCCEEECCSSCCCE-
T ss_pred             CCCCCCchhhcCCCCCCEEECCCCCCCCcChH-HHhhhCCcccEEecCCCccccc-c-cccc-CCCCCEEECCCCCCCC-
Confidence            99887787888899999999999999855554 554 789999999999998754 2 2234 7899999999999985 


Q ss_pred             cccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCC-Cccchhh
Q 045865          166 VRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLG-TNSSRIL  222 (225)
Q Consensus       166 ~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~-~~~~~~~  222 (225)
                      .+. .+..+++|+.|++++|++.   .+|..++. +++|+.|++++|+++ +.+|.++
T Consensus       206 ~~~-~~~~l~~L~~L~Ls~N~l~---~lp~~l~~-l~~L~~L~l~~N~l~c~~~~~~~  258 (487)
T 3oja_A          206 MGP-EFQSAAGVTWISLRNNKLV---LIEKALRF-SQNLEHFDLRGNGFHCGTLRDFF  258 (487)
T ss_dssp             ECG-GGGGGTTCSEEECTTSCCC---EECTTCCC-CTTCCEEECTTCCBCHHHHHHHH
T ss_pred             CCH-hHcCCCCccEEEecCCcCc---ccchhhcc-CCCCCEEEcCCCCCcCcchHHHH
Confidence            455 4888999999999999663   46767777 899999999999998 5555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.76  E-value=1.2e-17  Score=138.48  Aligned_cols=174  Identities=18%  Similarity=0.271  Sum_probs=145.4

Q ss_pred             CcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhh
Q 045865           18 TTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT   97 (225)
Q Consensus        18 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~   97 (225)
                      ....++.|++++|.+..    +.+  +..+++|++|++++|.+... +     .+..+++|++|++++|.+.+..+  +.
T Consensus       197 ~l~~L~~L~l~~n~l~~----~~~--~~~l~~L~~L~l~~n~l~~~-~-----~l~~l~~L~~L~l~~n~l~~~~~--~~  262 (466)
T 1o6v_A          197 KLTNLESLIATNNQISD----ITP--LGILTNLDELSLNGNQLKDI-G-----TLASLTNLTDLDLANNQISNLAP--LS  262 (466)
T ss_dssp             GCTTCSEEECCSSCCCC----CGG--GGGCTTCCEEECCSSCCCCC-G-----GGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred             cCCCCCEEEecCCcccc----ccc--ccccCCCCEEECCCCCcccc-h-----hhhcCCCCCEEECCCCccccchh--hh
Confidence            45689999999999873    333  67799999999999998873 3     37899999999999999987544  88


Q ss_pred             cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCC
Q 045865           98 HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSL  177 (225)
Q Consensus        98 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L  177 (225)
                      .+++|+.|++++|.+. ..+  .+..+++|+.|++++|.+.+..+  +.. +++|+.|++++|.+++..+   +..+++|
T Consensus       263 ~l~~L~~L~l~~n~l~-~~~--~~~~l~~L~~L~L~~n~l~~~~~--~~~-l~~L~~L~L~~n~l~~~~~---~~~l~~L  333 (466)
T 1o6v_A          263 GLTKLTELKLGANQIS-NIS--PLAGLTALTNLELNENQLEDISP--ISN-LKNLTYLTLYFNNISDISP---VSSLTKL  333 (466)
T ss_dssp             TCTTCSEEECCSSCCC-CCG--GGTTCTTCSEEECCSSCCSCCGG--GGG-CTTCSEEECCSSCCSCCGG---GGGCTTC
T ss_pred             cCCCCCEEECCCCccC-ccc--cccCCCccCeEEcCCCcccCchh--hcC-CCCCCEEECcCCcCCCchh---hccCccC
Confidence            8999999999999987 444  37788999999999999875433  566 9999999999999986543   6789999


Q ss_pred             cEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccc
Q 045865          178 EHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSS  219 (225)
Q Consensus       178 ~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~  219 (225)
                      +.|++++|++...    ..+.. +++|+.|++++|++++..|
T Consensus       334 ~~L~l~~n~l~~~----~~l~~-l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          334 QRLFFYNNKVSDV----SSLAN-LTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             CEEECCSSCCCCC----GGGTT-CTTCCEEECCSSCCCBCGG
T ss_pred             CEeECCCCccCCc----hhhcc-CCCCCEEeCCCCccCccch
Confidence            9999999976332    35777 9999999999999998877

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=2.7e-18  Score=129.61  Aligned_cols=158  Identities=20%  Similarity=0.243  Sum_probs=125.1

Q ss_pred             CCcccCCCceeecCCcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEEC
Q 045865            4 ATDCCQWERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNL   83 (225)
Q Consensus         4 ~~~~c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l   83 (225)
                      .++.|.|.++.|.            ++++.    .++...   .++|++|++++|.+....+.    .+..+++|++|++
T Consensus        15 ~~~~Cs~~~v~c~------------~~~l~----~ip~~~---~~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L   71 (229)
T 3e6j_A           15 SQCSCSGTTVDCR------------SKRHA----SVPAGI---PTNAQILYLHDNQITKLEPG----VFDSLINLKELYL   71 (229)
T ss_dssp             TTCEEETTEEECT------------TSCCS----SCCSCC---CTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEEC
T ss_pred             CCCEEeCCEeEcc------------CCCcC----ccCCCC---CCCCCEEEcCCCccCccCHH----HhhCccCCcEEEC
Confidence            4556666666665            44444    333322   26788999999999886666    5888999999999


Q ss_pred             CCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccc
Q 045865           84 SGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN  163 (225)
Q Consensus        84 ~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  163 (225)
                      ++|.+....+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+. .+|..+.. +++|+.|++++|.++
T Consensus        72 ~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A           72 GSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIER-LTHLTHLALDQNQLK  148 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGG-CTTCSEEECCSSCCC
T ss_pred             CCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCccc-ccCccccc-CCCCCEEECCCCcCC
Confidence            999998766677888999999999999987 555546788999999999999987 55666676 999999999999998


Q ss_pred             cccccCCCCCCCCCcEEEccCCccc
Q 045865          164 GVVRGQGFPHFKSLEHFDMRFARIA  188 (225)
Q Consensus       164 ~~~~~~~~~~~~~L~~l~l~~n~i~  188 (225)
                      .. +...+..+++|+.+++++|++.
T Consensus       149 ~~-~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          149 SI-PHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CC-CTTTTTTCTTCCEEECTTSCBC
T ss_pred             cc-CHHHHhCCCCCCEEEeeCCCcc
Confidence            44 4337899999999999999764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=3.4e-18  Score=128.24  Aligned_cols=154  Identities=20%  Similarity=0.235  Sum_probs=128.3

Q ss_pred             EEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCC
Q 045865           23 IALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL  102 (225)
Q Consensus        23 ~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L  102 (225)
                      +.++++++.+.    .++...   .+.+++|++++|.+....+..   .+..+++|++|++++|.++...+..+..+++|
T Consensus        14 ~~l~~s~n~l~----~iP~~~---~~~~~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L   83 (220)
T 2v70_A           14 TTVDCSNQKLN----KIPEHI---PQYTAELRLNNNEFTVLEATG---IFKKLPQLRKINFSNNKITDIEEGAFEGASGV   83 (220)
T ss_dssp             TEEECCSSCCS----SCCSCC---CTTCSEEECCSSCCCEECCCC---CGGGCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             CEeEeCCCCcc----cCccCC---CCCCCEEEcCCCcCCccCchh---hhccCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence            47899999887    454432   235689999999998754432   47889999999999999998777789999999


Q ss_pred             CEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEc
Q 045865          103 RSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDM  182 (225)
Q Consensus       103 ~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l  182 (225)
                      ++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+++..+. .+..+++|+.+++
T Consensus        84 ~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L  160 (220)
T 2v70_A           84 NEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIG-LSSVRLLSLYDNQITTVAPG-AFDTLHSLSTLNL  160 (220)
T ss_dssp             CEEECCSSCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTT-CTTCSEEECTTSCCCCBCTT-TTTTCTTCCEEEC
T ss_pred             CEEECCCCccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCC-CccCCEEECCCCcCCEECHH-HhcCCCCCCEEEe
Confidence            99999999997 555547889999999999999998666666777 99999999999999866666 8999999999999


Q ss_pred             cCCcccc
Q 045865          183 RFARIAL  189 (225)
Q Consensus       183 ~~n~i~~  189 (225)
                      ++|++..
T Consensus       161 ~~N~l~c  167 (220)
T 2v70_A          161 LANPFNC  167 (220)
T ss_dssp             CSCCEEC
T ss_pred             cCcCCcC
Confidence            9997643

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.75  E-value=5.2e-18  Score=136.40  Aligned_cols=191  Identities=19%  Similarity=0.177  Sum_probs=140.8

Q ss_pred             eeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCC-CCCEEECCCCCCChhhHHhhhcC----
Q 045865           25 LDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLN-NLKMLNLSGNSFNNSILSSLTHL----   99 (225)
Q Consensus        25 l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~l~~l----   99 (225)
                      ..++++++.    ...+..+...++|++|++++|.+....+...++.+..++ +|++|++++|.+....+..+..+    
T Consensus         3 ~~ls~n~~~----~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~   78 (362)
T 3goz_A            3 YKLTLHPGS----NPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI   78 (362)
T ss_dssp             EECCCCTTC----CHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred             cccccccch----HHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence            567788776    455556666777999999999999877655555788898 99999999999987666666654    


Q ss_pred             -CCCCEEEcCCCCCCCccchh---hhccC-CCCceeecCCCCCcHHHHHHHHhh----CCCCCEEecccccccccccc--
Q 045865          100 -SSLRSLNLLWNRLEGSIDVK---ELHNF-TNLEYLTLESSSLHISLLQSIASI----FPSLKNLSMSFCEVNGVVRG--  168 (225)
Q Consensus       100 -~~L~~L~l~~n~~~~~~~~~---~~~~l-~~L~~l~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~n~~~~~~~~--  168 (225)
                       ++|++|++++|.+.+..+..   .+..+ ++|+.|++++|.+.+..+..+...    .++|+.|++++|.+++....  
T Consensus        79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  158 (362)
T 3goz_A           79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL  158 (362)
T ss_dssp             CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred             CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence             89999999999987433321   23344 799999999999886555444331    25999999999998743322  


Q ss_pred             -CCCCCCC-CCcEEEccCCccccch--hHHHHHhhcC-CCCcEEEccCCcCCCccch
Q 045865          169 -QGFPHFK-SLEHFDMRFARIALNT--SFLQIIGESM-PSLKYLLLSYSTLGTNSSR  220 (225)
Q Consensus       169 -~~~~~~~-~L~~l~l~~n~i~~~~--~~~~~l~~~~-~~L~~L~l~~n~l~~~~~~  220 (225)
                       ..+...+ +|+.|++++|++...+  .+...+.. + ++|+.|++++|.+++....
T Consensus       159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~~L~~L~Ls~N~i~~~~~~  214 (362)
T 3goz_A          159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS-IPASVTSLDLSANLLGLKSYA  214 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHT-SCTTCCEEECTTSCGGGSCHH
T ss_pred             HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHh-CCCCCCEEECCCCCCChhHHH
Confidence             1334454 8999999999663322  33445555 6 5999999999999975443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=3.8e-18  Score=128.00  Aligned_cols=157  Identities=18%  Similarity=0.209  Sum_probs=130.4

Q ss_pred             ccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhH-HhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCc
Q 045865           50 LESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSIL-SSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLE  128 (225)
Q Consensus        50 L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  128 (225)
                      -++++++++.+.. +|.    .+  .+.+++|++++|.++...+ ..+..+++|++|++++|.+. .++...+..+++|+
T Consensus        13 ~~~l~~s~n~l~~-iP~----~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~   84 (220)
T 2v70_A           13 GTTVDCSNQKLNK-IPE----HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVN   84 (220)
T ss_dssp             TTEEECCSSCCSS-CCS----CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCC
T ss_pred             CCEeEeCCCCccc-Ccc----CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCC
Confidence            3589999999877 554    22  4577999999999988644 45789999999999999998 55555889999999


Q ss_pred             eeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEE
Q 045865          129 YLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLL  208 (225)
Q Consensus       129 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~  208 (225)
                      .|++++|.+.+..+..+.. +++|+.|++++|.+++..+. .+..+++|+.|++++|++  .+..|..+.. +++|+.|+
T Consensus        85 ~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l--~~~~~~~~~~-l~~L~~L~  159 (220)
T 2v70_A           85 EILLTSNRLENVQHKMFKG-LESLKTLMLRSNRITCVGND-SFIGLSSVRLLSLYDNQI--TTVAPGAFDT-LHSLSTLN  159 (220)
T ss_dssp             EEECCSSCCCCCCGGGGTT-CSSCCEEECTTSCCCCBCTT-SSTTCTTCSEEECTTSCC--CCBCTTTTTT-CTTCCEEE
T ss_pred             EEECCCCccCccCHhHhcC-CcCCCEEECCCCcCCeECHh-HcCCCccCCEEECCCCcC--CEECHHHhcC-CCCCCEEE
Confidence            9999999998665566666 99999999999999966666 899999999999999955  4444677888 99999999


Q ss_pred             ccCCcCCCccc
Q 045865          209 LSYSTLGTNSS  219 (225)
Q Consensus       209 l~~n~l~~~~~  219 (225)
                      +++|+++...+
T Consensus       160 L~~N~l~c~c~  170 (220)
T 2v70_A          160 LLANPFNCNCY  170 (220)
T ss_dssp             CCSCCEECSGG
T ss_pred             ecCcCCcCCCc
Confidence            99999987654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.75  E-value=1e-18  Score=138.84  Aligned_cols=181  Identities=16%  Similarity=0.172  Sum_probs=120.6

Q ss_pred             ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCC
Q 045865           21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS  100 (225)
Q Consensus        21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~  100 (225)
                      +++.++++++.+.    .++...   .+++++|++++|.+....+.    .+..+++|++|++++|.++...+..+..++
T Consensus        34 ~l~~l~~~~~~l~----~ip~~~---~~~l~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  102 (332)
T 2ft3_A           34 HLRVVQCSDLGLK----AVPKEI---SPDTTLLDLQNNDISELRKD----DFKGLQHLYALVLVNNKISKIHEKAFSPLR  102 (332)
T ss_dssp             ETTEEECCSSCCS----SCCSCC---CTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECGGGSTTCT
T ss_pred             cCCEEECCCCCcc----ccCCCC---CCCCeEEECCCCcCCccCHh----HhhCCCCCcEEECCCCccCccCHhHhhCcC
Confidence            5678999999886    455433   36899999999999876565    589999999999999999988788999999


Q ss_pred             CCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEecccccc------------------
Q 045865          101 SLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEV------------------  162 (225)
Q Consensus       101 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~------------------  162 (225)
                      +|++|++++|.+. .+|. .+.  ++|++|++++|.+....+..+.. +++|+.|++++|.+                  
T Consensus       103 ~L~~L~L~~n~l~-~l~~-~~~--~~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L  177 (332)
T 2ft3_A          103 KLQKLYISKNHLV-EIPP-NLP--SSLVELRIHDNRIRKVPKGVFSG-LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYL  177 (332)
T ss_dssp             TCCEEECCSSCCC-SCCS-SCC--TTCCEEECCSSCCCCCCSGGGSS-CSSCCEEECCSCCCBGGGSCTTSSCSCCCSCC
T ss_pred             CCCEEECCCCcCC-ccCc-ccc--ccCCEEECCCCccCccCHhHhCC-CccCCEEECCCCccccCCCCcccccCCccCEE
Confidence            9999999999886 4443 111  44555555555544222222333 44444444444443                  


Q ss_pred             ----------------------------ccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcC
Q 045865          163 ----------------------------NGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTL  214 (225)
Q Consensus       163 ----------------------------~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l  214 (225)
                                                  ++..+. .+..+++|+.|++++|++  .+..+..+.. +++|+.|++++|++
T Consensus       178 ~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~L~~N~l--~~~~~~~~~~-l~~L~~L~L~~N~l  253 (332)
T 2ft3_A          178 RISEAKLTGIPKDLPETLNELHLDHNKIQAIELE-DLLRYSKLYRLGLGHNQI--RMIENGSLSF-LPTLRELHLDNNKL  253 (332)
T ss_dssp             BCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTT-SSTTCTTCSCCBCCSSCC--CCCCTTGGGG-CTTCCEEECCSSCC
T ss_pred             ECcCCCCCccCccccCCCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcC--CcCChhHhhC-CCCCCEEECCCCcC
Confidence                                        322222 455666777777777744  2222334566 77788888888877


Q ss_pred             CCccchhh
Q 045865          215 GTNSSRIL  222 (225)
Q Consensus       215 ~~~~~~~~  222 (225)
                      + .+|..+
T Consensus       254 ~-~lp~~l  260 (332)
T 2ft3_A          254 S-RVPAGL  260 (332)
T ss_dssp             C-BCCTTG
T ss_pred             e-ecChhh
Confidence            7 455444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=1.5e-18  Score=139.62  Aligned_cols=178  Identities=21%  Similarity=0.212  Sum_probs=134.9

Q ss_pred             EEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHh-cCCCCCEEECCCCCCChhhHHhhhcCCC
Q 045865           23 IALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLS-RLNNLKMLNLSGNSFNNSILSSLTHLSS  101 (225)
Q Consensus        23 ~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~l~~l~~  101 (225)
                      +.++.+++++.    .++...   .+.++.|++++|.+....+.    .+. .+++|++|++++|.+....+..|..+++
T Consensus        21 ~~l~c~~~~l~----~iP~~~---~~~l~~L~Ls~N~l~~l~~~----~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~   89 (361)
T 2xot_A           21 NILSCSKQQLP----NVPQSL---PSYTALLDLSHNNLSRLRAE----WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN   89 (361)
T ss_dssp             TEEECCSSCCS----SCCSSC---CTTCSEEECCSSCCCEECTT----SSSSCCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             CEEEeCCCCcC----ccCccC---CCCCCEEECCCCCCCccChh----hhhhcccccCEEECCCCcCCccChhhccCCCC
Confidence            46888888876    444432   23578899999998875554    455 8899999999999998877778888999


Q ss_pred             CCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCC---CCCCCCc
Q 045865          102 LRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGF---PHFKSLE  178 (225)
Q Consensus       102 L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~---~~~~~L~  178 (225)
                      |++|++++|.+. .++...+..+++|+.|++++|.+....+..+.. +++|+.|++++|.++. ++...+   ..+++|+
T Consensus        90 L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~-l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~  166 (361)
T 2xot_A           90 LRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED-MAQLQKLYLSQNQISR-FPVELIKDGNKLPKLM  166 (361)
T ss_dssp             CCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCS-CCGGGTC----CTTCC
T ss_pred             CCEEECCCCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCC-cccCCEEECCCCcCCe-eCHHHhcCcccCCcCC
Confidence            999999999987 555547888899999999999987655666766 8999999999999884 444255   5688999


Q ss_pred             EEEccCCccccchhHHHHHhhcCCC--CcEEEccCCcCCCc
Q 045865          179 HFDMRFARIALNTSFLQIIGESMPS--LKYLLLSYSTLGTN  217 (225)
Q Consensus       179 ~l~l~~n~i~~~~~~~~~l~~~~~~--L~~L~l~~n~l~~~  217 (225)
                      .|++++|+|.  ..-+..+.. ++.  ++.|++.+|++.-.
T Consensus       167 ~L~L~~N~l~--~l~~~~~~~-l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          167 LLDLSSNKLK--KLPLTDLQK-LPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             EEECCSSCCC--CCCHHHHHH-SCHHHHTTEECCSSCEECC
T ss_pred             EEECCCCCCC--ccCHHHhhh-ccHhhcceEEecCCCccCC
Confidence            9999999663  222345666 766  47899999988643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.74  E-value=5.8e-19  Score=133.99  Aligned_cols=175  Identities=15%  Similarity=0.167  Sum_probs=143.1

Q ss_pred             cCceEEeeccccc-cccchhHHhhhhhcCCCCccEEEccC-CcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhh
Q 045865           19 TGRVIALDLSYIY-SGEYSWYLNASLFTPFQQLESLDLTQ-NKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL   96 (225)
Q Consensus        19 ~~~v~~l~l~~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l   96 (225)
                      ..+++.|++++|. +.    .+++..|.++++|++|++++ |.+....+.    .|..+++|++|++++|.+++ .|. +
T Consensus        54 l~~L~~L~l~~n~~l~----~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~----~f~~l~~L~~L~l~~n~l~~-lp~-~  123 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQ----QLESHSFYNLSKVTHIEIRNTRNLTYIDPD----ALKELPLLKFLGIFNTGLKM-FPD-L  123 (239)
T ss_dssp             CTTCCEEEEECCSSCC----EECTTTEESCTTCCEEEEEEETTCCEECTT----SEECCTTCCEEEEEEECCCS-CCC-C
T ss_pred             CCCCcEEeCCCCCCcc----eeCHhHcCCCcCCcEEECCCCCCeeEcCHH----HhCCCCCCCEEeCCCCCCcc-ccc-c
Confidence            4689999999997 76    67777899999999999998 999875544    57899999999999999987 444 7


Q ss_pred             hcCCCCC---EEEcCCC-CCCCccchhhhccCCCCc-eeecCCCCCcHHHHHHHHhhCCCCCEEeccccc-cccccccCC
Q 045865           97 THLSSLR---SLNLLWN-RLEGSIDVKELHNFTNLE-YLTLESSSLHISLLQSIASIFPSLKNLSMSFCE-VNGVVRGQG  170 (225)
Q Consensus        97 ~~l~~L~---~L~l~~n-~~~~~~~~~~~~~l~~L~-~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~  170 (225)
                      ..+++|+   +|++++| .+. .++...+..+++|+ .+++++|.+. .++..... .++|+.|++++|. ++ .++...
T Consensus       124 ~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~-~~~L~~L~L~~n~~l~-~i~~~~  199 (239)
T 2xwt_C          124 TKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFN-GTKLDAVYLNKNKYLT-VIDKDA  199 (239)
T ss_dssp             TTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCC-EECTTTTT-TCEEEEEECTTCTTCC-EECTTT
T ss_pred             ccccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCc-ccCHhhcC-CCCCCEEEcCCCCCcc-cCCHHH
Confidence            7888888   9999999 886 66655788999999 9999999987 45555555 5789999999995 87 444448


Q ss_pred             CCCC-CCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCc
Q 045865          171 FPHF-KSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYST  213 (225)
Q Consensus       171 ~~~~-~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~  213 (225)
                      |..+ ++|+.+++++|++.   .+|..  . +++|+.|++.++.
T Consensus       200 ~~~l~~~L~~L~l~~N~l~---~l~~~--~-~~~L~~L~l~~~~  237 (239)
T 2xwt_C          200 FGGVYSGPSLLDVSQTSVT---ALPSK--G-LEHLKELIARNTW  237 (239)
T ss_dssp             TTTCSBCCSEEECTTCCCC---CCCCT--T-CTTCSEEECTTC-
T ss_pred             hhccccCCcEEECCCCccc---cCChh--H-hccCceeeccCcc
Confidence            8999 99999999999763   33432  3 8899999998863

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=1.3e-17  Score=125.81  Aligned_cols=156  Identities=19%  Similarity=0.205  Sum_probs=117.2

Q ss_pred             ccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCce
Q 045865           50 LESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEY  129 (225)
Q Consensus        50 L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  129 (225)
                      .+.++.+++.+.. +|.      .-.++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.
T Consensus        21 ~~~v~c~~~~l~~-ip~------~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~   92 (229)
T 3e6j_A           21 GTTVDCRSKRHAS-VPA------GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTV   92 (229)
T ss_dssp             TTEEECTTSCCSS-CCS------CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             CCEeEccCCCcCc-cCC------CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCE
Confidence            4567888777765 444      22378888899888888877778888888899999888886 555546778888888


Q ss_pred             eecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEc
Q 045865          130 LTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLL  209 (225)
Q Consensus       130 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l  209 (225)
                      |++++|.+....+..+.. +++|+.|++++|.++ .+|. .+..+++|+.|++++|++.  ...+..+.. +++|+.|++
T Consensus        93 L~Ls~N~l~~l~~~~~~~-l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~--~~~~~~~~~-l~~L~~L~l  166 (229)
T 3e6j_A           93 LDLGTNQLTVLPSAVFDR-LVHLKELFMCCNKLT-ELPR-GIERLTHLTHLALDQNQLK--SIPHGAFDR-LSSLTHAYL  166 (229)
T ss_dssp             EECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCC-SCCT-TGGGCTTCSEEECCSSCCC--CCCTTTTTT-CTTCCEEEC
T ss_pred             EECCCCcCCccChhHhCc-chhhCeEeccCCccc-ccCc-ccccCCCCCEEECCCCcCC--ccCHHHHhC-CCCCCEEEe
Confidence            889888887544444555 888888998888887 5666 6788888889999888653  222244666 888888999


Q ss_pred             cCCcCCCccc
Q 045865          210 SYSTLGTNSS  219 (225)
Q Consensus       210 ~~n~l~~~~~  219 (225)
                      .+|+++...+
T Consensus       167 ~~N~~~c~c~  176 (229)
T 3e6j_A          167 FGNPWDCECR  176 (229)
T ss_dssp             TTSCBCTTBG
T ss_pred             eCCCccCCcc
Confidence            8888887654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.74  E-value=1.8e-18  Score=133.23  Aligned_cols=170  Identities=18%  Similarity=0.224  Sum_probs=130.3

Q ss_pred             ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCC
Q 045865           21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS  100 (225)
Q Consensus        21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~  100 (225)
                      .++.++++++.+.    .+.  .+..+++|++|++++|.+.. .+.     +..+++|++|++++|.+++..+  +..++
T Consensus        20 ~l~~l~l~~~~i~----~~~--~~~~l~~L~~L~l~~n~i~~-l~~-----l~~l~~L~~L~L~~N~i~~~~~--l~~l~   85 (263)
T 1xeu_A           20 NAVKQNLGKQSVT----DLV--SQKELSGVQNFNGDNSNIQS-LAG-----MQFFTNLKELHLSHNQISDLSP--LKDLT   85 (263)
T ss_dssp             HHHHHHHTCSCTT----SEE--CHHHHTTCSEEECTTSCCCC-CTT-----GGGCTTCCEEECCSSCCCCCGG--GTTCS
T ss_pred             HHHHHHhcCCCcc----ccc--chhhcCcCcEEECcCCCccc-chH-----HhhCCCCCEEECCCCccCCChh--hccCC
Confidence            3455677777765    233  35678889999999998876 343     7888999999999999987544  88899


Q ss_pred             CCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEE
Q 045865          101 SLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHF  180 (225)
Q Consensus       101 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l  180 (225)
                      +|++|++++|.+. .++.  +.. .+|+.|++++|.+.+.  ..+.. +++|+.|++++|.+++. +  .+..+++|+.|
T Consensus        86 ~L~~L~L~~N~l~-~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~-l~~L~~L~Ls~N~i~~~-~--~l~~l~~L~~L  155 (263)
T 1xeu_A           86 KLEELSVNRNRLK-NLNG--IPS-ACLSRLFLDNNELRDT--DSLIH-LKNLEILSIRNNKLKSI-V--MLGFLSKLEVL  155 (263)
T ss_dssp             SCCEEECCSSCCS-CCTT--CCC-SSCCEEECCSSCCSBS--GGGTT-CTTCCEEECTTSCCCBC-G--GGGGCTTCCEE
T ss_pred             CCCEEECCCCccC-CcCc--ccc-CcccEEEccCCccCCC--hhhcC-cccccEEECCCCcCCCC-h--HHccCCCCCEE
Confidence            9999999999887 4442  223 8899999999988753  34566 89999999999998754 2  57788999999


Q ss_pred             EccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccc
Q 045865          181 DMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSS  219 (225)
Q Consensus       181 ~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~  219 (225)
                      ++++|++...    ..+.. +++|+.|++++|+++....
T Consensus       156 ~L~~N~i~~~----~~l~~-l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          156 DLHGNEITNT----GGLTR-LKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             ECTTSCCCBC----TTSTT-CCCCCEEEEEEEEEECCCE
T ss_pred             ECCCCcCcch----HHhcc-CCCCCEEeCCCCcccCCcc
Confidence            9999966333    45677 8999999999999886643

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.72  E-value=9.2e-18  Score=125.91  Aligned_cols=154  Identities=12%  Similarity=0.185  Sum_probs=126.6

Q ss_pred             cEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCcee
Q 045865           51 ESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYL  130 (225)
Q Consensus        51 ~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l  130 (225)
                      +.++.+++.+.. +|.    .+  .++++.|++++|.+....+..+..+++|+.|++++|.+. .+.+..+..+++|+.|
T Consensus        14 ~~v~c~~~~l~~-iP~----~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L   85 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPT----NL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSL   85 (220)
T ss_dssp             TEEECTTSCCSS-CCS----SC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEE
T ss_pred             CEEEcCCCCcCc-CCC----cc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEE
Confidence            578888888876 454    22  378999999999999877778999999999999999998 5444489999999999


Q ss_pred             ecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEcc
Q 045865          131 TLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLS  210 (225)
Q Consensus       131 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~  210 (225)
                      ++++|.+....+..+.. +++|+.|++++|.+++..+. .|..+++|+.|++++|++  .+..+..+.. +++|+.|+++
T Consensus        86 ~Ls~N~l~~l~~~~f~~-l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l--~~~~~~~~~~-l~~L~~L~L~  160 (220)
T 2v9t_B           86 VLYGNKITELPKSLFEG-LFSLQLLLLNANKINCLRVD-AFQDLHNLNLLSLYDNKL--QTIAKGTFSP-LRAIQTMHLA  160 (220)
T ss_dssp             ECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCC--SCCCTTTTTT-CTTCCEEECC
T ss_pred             ECCCCcCCccCHhHccC-CCCCCEEECCCCCCCEeCHH-HcCCCCCCCEEECCCCcC--CEECHHHHhC-CCCCCEEEeC
Confidence            99999998443344555 99999999999999866566 899999999999999966  3333445777 9999999999


Q ss_pred             CCcCCCc
Q 045865          211 YSTLGTN  217 (225)
Q Consensus       211 ~n~l~~~  217 (225)
                      +|++...
T Consensus       161 ~N~~~c~  167 (220)
T 2v9t_B          161 QNPFICD  167 (220)
T ss_dssp             SSCEECS
T ss_pred             CCCcCCC
Confidence            9998653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=1.3e-17  Score=122.89  Aligned_cols=150  Identities=19%  Similarity=0.321  Sum_probs=125.4

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH   98 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~   98 (225)
                      ..+++.|+++++.+.    .++  .+..+++|++|++++|.+.. .+     .+..+++|++|++++|.++...+..+..
T Consensus        43 l~~L~~L~l~~n~i~----~l~--~l~~l~~L~~L~l~~n~~~~-~~-----~l~~l~~L~~L~l~~n~l~~~~~~~l~~  110 (197)
T 4ezg_A           43 MNSLTYITLANINVT----DLT--GIEYAHNIKDLTINNIHATN-YN-----PISGLSNLERLRIMGKDVTSDKIPNLSG  110 (197)
T ss_dssp             HHTCCEEEEESSCCS----CCT--TGGGCTTCSEEEEESCCCSC-CG-----GGTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred             cCCccEEeccCCCcc----ChH--HHhcCCCCCEEEccCCCCCc-ch-----hhhcCCCCCEEEeECCccCcccChhhcC
Confidence            347899999999987    344  47889999999999997765 33     3788999999999999998877888999


Q ss_pred             CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCC-CcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCC
Q 045865           99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSS-LHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSL  177 (225)
Q Consensus        99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L  177 (225)
                      +++|++|++++|.+.+..+. .+..+++|+.|++++|. +.. .+ .+.. +++|+.|++++|.+++. +  .+..+++|
T Consensus       111 l~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~~i~~-~~-~l~~-l~~L~~L~l~~n~i~~~-~--~l~~l~~L  183 (197)
T 4ezg_A          111 LTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITD-IM-PLKT-LPELKSLNIQFDGVHDY-R--GIEDFPKL  183 (197)
T ss_dssp             CTTCCEEECCSSBCBGGGHH-HHTTCSSCCEEECCSCTBCCC-CG-GGGG-CSSCCEEECTTBCCCCC-T--TGGGCSSC
T ss_pred             CCCCCEEEecCCccCcHhHH-HHhhCCCCCEEEccCCCCccc-cH-hhcC-CCCCCEEECCCCCCcCh-H--HhccCCCC
Confidence            99999999999999854554 88899999999999998 664 33 5666 99999999999999853 2  57889999


Q ss_pred             cEEEccCCcc
Q 045865          178 EHFDMRFARI  187 (225)
Q Consensus       178 ~~l~l~~n~i  187 (225)
                      +.|++++|+|
T Consensus       184 ~~L~l~~N~i  193 (197)
T 4ezg_A          184 NQLYAFSQTI  193 (197)
T ss_dssp             CEEEECBC--
T ss_pred             CEEEeeCccc
Confidence            9999999965

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.72  E-value=6.6e-18  Score=144.53  Aligned_cols=169  Identities=19%  Similarity=0.192  Sum_probs=131.6

Q ss_pred             CCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCC
Q 045865           48 QQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNL  127 (225)
Q Consensus        48 ~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  127 (225)
                      +.+++|++++|.|....+.    .|..+++|++|++++|.++...+..|..+++|++|++++|.+. .++...+..+++|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~----~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L  126 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSL  126 (635)
T ss_dssp             TTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTC
T ss_pred             cCCCEEEeeCCCCCCCCHH----HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCC
Confidence            3689999999999885555    6899999999999999999877888999999999999999997 6676578999999


Q ss_pred             ceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccc-hhHHHHHhhcCCCCcE
Q 045865          128 EYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALN-TSFLQIIGESMPSLKY  206 (225)
Q Consensus       128 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~-~~~~~~l~~~~~~L~~  206 (225)
                      ++|++++|.+.+..+..+.. +++|+.|++++|.++.......+..+++|++|++++|++... ......+.+.......
T Consensus       127 ~~L~Ls~N~l~~l~~~~~~~-L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~  205 (635)
T 4g8a_A          127 QKLVAVETNLASLENFPIGH-LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS  205 (635)
T ss_dssp             CEEECTTSCCCCSTTCCCTT-CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCE
T ss_pred             CEEECCCCcCCCCChhhhhc-CcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhh
Confidence            99999999987544445666 999999999999987543233778899999999999966321 1112233331223457


Q ss_pred             EEccCCcCCCccchhh
Q 045865          207 LLLSYSTLGTNSSRIL  222 (225)
Q Consensus       207 L~l~~n~l~~~~~~~~  222 (225)
                      ++++.|.++...+..+
T Consensus       206 ~~ls~n~l~~i~~~~~  221 (635)
T 4g8a_A          206 LDLSLNPMNFIQPGAF  221 (635)
T ss_dssp             EECTTCCCCEECTTTT
T ss_pred             hhcccCcccccCcccc
Confidence            8899998886655443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=4.1e-17  Score=127.42  Aligned_cols=151  Identities=18%  Similarity=0.309  Sum_probs=127.7

Q ss_pred             cCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccC
Q 045865           45 TPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNF  124 (225)
Q Consensus        45 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l  124 (225)
                      ..+++|++|++++|.+... +.     +..+++|++|++++|.+++..+  +..+++|++|++++|.+. .++  .+..+
T Consensus        43 ~~l~~L~~L~l~~~~i~~~-~~-----~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~--~l~~l  111 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV-QG-----IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLS--SLKDL  111 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC-TT-----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGG--GGTTC
T ss_pred             hhcCcccEEEccCCCcccC-hh-----HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CCh--hhccC
Confidence            4577899999999999863 43     7889999999999999988544  889999999999999987 444  58889


Q ss_pred             CCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCC
Q 045865          125 TNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSL  204 (225)
Q Consensus       125 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L  204 (225)
                      ++|+.|++++|.+.+.  ..+.. +++|+.|++++|.+++.  . .+..+++|+.|++++|++...   +. +.. +++|
T Consensus       112 ~~L~~L~L~~n~i~~~--~~l~~-l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~N~l~~~---~~-l~~-l~~L  180 (291)
T 1h6t_A          112 KKLKSLSLEHNGISDI--NGLVH-LPQLESLYLGNNKITDI--T-VLSRLTKLDTLSLEDNQISDI---VP-LAG-LTKL  180 (291)
T ss_dssp             TTCCEEECTTSCCCCC--GGGGG-CTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCCC---GG-GTT-CTTC
T ss_pred             CCCCEEECCCCcCCCC--hhhcC-CCCCCEEEccCCcCCcc--h-hhccCCCCCEEEccCCccccc---hh-hcC-CCcc
Confidence            9999999999998753  45666 99999999999999854  3 688999999999999976332   22 777 9999


Q ss_pred             cEEEccCCcCCCc
Q 045865          205 KYLLLSYSTLGTN  217 (225)
Q Consensus       205 ~~L~l~~n~l~~~  217 (225)
                      +.|++++|.+++.
T Consensus       181 ~~L~L~~N~i~~l  193 (291)
T 1h6t_A          181 QNLYLSKNHISDL  193 (291)
T ss_dssp             CEEECCSSCCCBC
T ss_pred             CEEECCCCcCCCC
Confidence            9999999999964

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.71  E-value=1.8e-18  Score=138.49  Aligned_cols=201  Identities=13%  Similarity=0.140  Sum_probs=144.9

Q ss_pred             cCCCceeecCC---------cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCC
Q 045865            8 CQWERVECSNT---------TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNL   78 (225)
Q Consensus         8 c~~~~~~~~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L   78 (225)
                      |++..+.|...         +..+++|++++|++.    .+++.+|.++++|++|++++|.+.+.++..   .|..++++
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~----~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~---~f~~L~~l   81 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR----VIQKGAFSGFGDLEKIEISQNDVLEVIEAD---VFSNLPKL   81 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS----EECTTSSTTCTTCCEEEEECCTTCCEECTT---SBCSCTTC
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC----CcCHHHHcCCCCCCEEECcCCCCCCccChh---Hhhcchhh
Confidence            66777888642         256899999999998    788889999999999999999987655543   46788888


Q ss_pred             CE-EECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCC-CCCcHHHHHHHHhhCCCCCEEe
Q 045865           79 KM-LNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLES-SSLHISLLQSIASIFPSLKNLS  156 (225)
Q Consensus        79 ~~-L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~~~~~L~~L~  156 (225)
                      ++ +.+..|.+....+..|..+++|++|++++|.+. .++...+.....+..+++.+ +.+.......+......++.|+
T Consensus        82 ~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~  160 (350)
T 4ay9_X           82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW  160 (350)
T ss_dssp             CEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEE
T ss_pred             hhhhcccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhc
Confidence            76 556678898877888999999999999999987 44433555556677777755 3444222223333124678888


Q ss_pred             ccccccccccccCCCCCCCCCcEEEccC-CccccchhHHH-HHhhcCCCCcEEEccCCcCCCccchhh
Q 045865          157 MSFCEVNGVVRGQGFPHFKSLEHFDMRF-ARIALNTSFLQ-IIGESMPSLKYLLLSYSTLGTNSSRIL  222 (225)
Q Consensus       157 l~~n~~~~~~~~~~~~~~~~L~~l~l~~-n~i~~~~~~~~-~l~~~~~~L~~L~l~~n~l~~~~~~~~  222 (225)
                      +++|.++ .++. ......+|+.++++. |.+   ..+|. ++.. +++|+.|++++|+|+..++..|
T Consensus       161 L~~N~i~-~i~~-~~f~~~~L~~l~l~~~n~l---~~i~~~~f~~-l~~L~~LdLs~N~l~~lp~~~~  222 (350)
T 4ay9_X          161 LNKNGIQ-EIHN-SAFNGTQLDELNLSDNNNL---EELPNDVFHG-ASGPVILDISRTRIHSLPSYGL  222 (350)
T ss_dssp             CCSSCCC-EECT-TSSTTEEEEEEECTTCTTC---CCCCTTTTTT-EECCSEEECTTSCCCCCCSSSC
T ss_pred             ccccccc-CCCh-hhccccchhHHhhccCCcc---cCCCHHHhcc-CcccchhhcCCCCcCccChhhh
Confidence            9998887 4555 333456788888875 433   44443 4566 8888999999998886655444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.70  E-value=3.7e-17  Score=131.41  Aligned_cols=159  Identities=24%  Similarity=0.263  Sum_probs=128.9

Q ss_pred             ccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhh-cCCCCCEEEcCCCCCCCccchhhhccCCCCc
Q 045865           50 LESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT-HLSSLRSLNLLWNRLEGSIDVKELHNFTNLE  128 (225)
Q Consensus        50 L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  128 (225)
                      -+.++++++.+.. +|.    .+  .+.++.|++++|.++...+..+. .+++|+.|++++|.+. .++...+..+++|+
T Consensus        20 ~~~l~c~~~~l~~-iP~----~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~   91 (361)
T 2xot_A           20 SNILSCSKQQLPN-VPQ----SL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLR   91 (361)
T ss_dssp             TTEEECCSSCCSS-CCS----SC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCC
T ss_pred             CCEEEeCCCCcCc-cCc----cC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCC
Confidence            3578999998877 554    12  45799999999999987777777 8999999999999998 55554789999999


Q ss_pred             eeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHH----hhcCCCC
Q 045865          129 YLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQII----GESMPSL  204 (225)
Q Consensus       129 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l----~~~~~~L  204 (225)
                      .|++++|.+....+..+.. +++|+.|++++|.++...+. .|.++++|+.|++++|++.   .+|..+    .. +++|
T Consensus        92 ~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~L~~N~l~---~l~~~~~~~~~~-l~~L  165 (361)
T 2xot_A           92 YLDLSSNHLHTLDEFLFSD-LQALEVLLLYNNHIVVVDRN-AFEDMAQLQKLYLSQNQIS---RFPVELIKDGNK-LPKL  165 (361)
T ss_dssp             EEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCC---SCCGGGTC-----CTTC
T ss_pred             EEECCCCcCCcCCHHHhCC-CcCCCEEECCCCcccEECHH-HhCCcccCCEEECCCCcCC---eeCHHHhcCccc-CCcC
Confidence            9999999998554455666 99999999999999865555 8999999999999999763   333332    45 8999


Q ss_pred             cEEEccCCcCCCccchhh
Q 045865          205 KYLLLSYSTLGTNSSRIL  222 (225)
Q Consensus       205 ~~L~l~~n~l~~~~~~~~  222 (225)
                      +.|+|++|+|++..+..+
T Consensus       166 ~~L~L~~N~l~~l~~~~~  183 (361)
T 2xot_A          166 MLLDLSSNKLKKLPLTDL  183 (361)
T ss_dssp             CEEECCSSCCCCCCHHHH
T ss_pred             CEEECCCCCCCccCHHHh
Confidence            999999999997765544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.70  E-value=1.7e-16  Score=131.36  Aligned_cols=171  Identities=18%  Similarity=0.166  Sum_probs=106.4

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH   98 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~   98 (225)
                      ...++.|++++|.+..    ++   +..+++|++|++++|.+.+.  +     +..+++|++|++++|.+++. +  +..
T Consensus        63 l~~L~~L~Ls~n~l~~----~~---~~~l~~L~~L~Ls~N~l~~~--~-----~~~l~~L~~L~L~~N~l~~l-~--~~~  125 (457)
T 3bz5_A           63 LTGLTKLICTSNNITT----LD---LSQNTNLTYLACDSNKLTNL--D-----VTPLTKLTYLNCDTNKLTKL-D--VSQ  125 (457)
T ss_dssp             CTTCSEEECCSSCCSC----CC---CTTCTTCSEEECCSSCCSCC--C-----CTTCTTCCEEECCSSCCSCC-C--CTT
T ss_pred             cCCCCEEEccCCcCCe----Ec---cccCCCCCEEECcCCCCcee--e-----cCCCCcCCEEECCCCcCCee-c--CCC
Confidence            3467777777777652    21   56667777777777766652  1     45666667777766666552 2  555


Q ss_pred             CCCCCEEEcCCCCCCCccchh-------------------hhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccc
Q 045865           99 LSSLRSLNLLWNRLEGSIDVK-------------------ELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSF  159 (225)
Q Consensus        99 l~~L~~L~l~~n~~~~~~~~~-------------------~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  159 (225)
                      +++|++|++++|.+.+ ++..                   .+..+++|+.|++++|.+.+. +  +.. +++|+.|++++
T Consensus       126 l~~L~~L~l~~N~l~~-l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l-~--l~~-l~~L~~L~l~~  200 (457)
T 3bz5_A          126 NPLLTYLNCARNTLTE-IDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL-D--VSQ-NKLLNRLNCDT  200 (457)
T ss_dssp             CTTCCEEECTTSCCSC-CCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC-C--CTT-CTTCCEEECCS
T ss_pred             CCcCCEEECCCCccce-eccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee-c--ccc-CCCCCEEECcC
Confidence            6666666666666542 2100                   233455666666666666542 2  444 66777777777


Q ss_pred             cccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchh
Q 045865          160 CEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRI  221 (225)
Q Consensus       160 n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~  221 (225)
                      |.+++.    .+..+++|+.|++++|++.  + +|  ++. +++|+.|++++|++++..+..
T Consensus       201 N~l~~~----~l~~l~~L~~L~Ls~N~l~--~-ip--~~~-l~~L~~L~l~~N~l~~~~~~~  252 (457)
T 3bz5_A          201 NNITKL----DLNQNIQLTFLDCSSNKLT--E-ID--VTP-LTQLTYFDCSVNPLTELDVST  252 (457)
T ss_dssp             SCCSCC----CCTTCTTCSEEECCSSCCS--C-CC--CTT-CTTCSEEECCSSCCSCCCCTT
T ss_pred             CcCCee----ccccCCCCCEEECcCCccc--c-cC--ccc-cCCCCEEEeeCCcCCCcCHHH
Confidence            766643    3667788888888888552  2 44  666 888888888888888765543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.67  E-value=3.4e-16  Score=129.54  Aligned_cols=169  Identities=21%  Similarity=0.163  Sum_probs=118.0

Q ss_pred             CcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhh
Q 045865           18 TTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT   97 (225)
Q Consensus        18 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~   97 (225)
                      ...+++.|+++++.+.    .++  .+..+++|++|++++|.+.+. +      +..+++|++|++++|.+++. +  +.
T Consensus        40 ~l~~L~~L~Ls~n~l~----~~~--~l~~l~~L~~L~Ls~n~l~~~-~------~~~l~~L~~L~Ls~N~l~~~-~--~~  103 (457)
T 3bz5_A           40 QLATLTSLDCHNSSIT----DMT--GIEKLTGLTKLICTSNNITTL-D------LSQNTNLTYLACDSNKLTNL-D--VT  103 (457)
T ss_dssp             HHTTCCEEECCSSCCC----CCT--TGGGCTTCSEEECCSSCCSCC-C------CTTCTTCSEEECCSSCCSCC-C--CT
T ss_pred             HcCCCCEEEccCCCcc----cCh--hhcccCCCCEEEccCCcCCeE-c------cccCCCCCEEECcCCCCcee-e--cC
Confidence            3468999999999987    333  578899999999999999873 2      67899999999999999874 2  88


Q ss_pred             cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEecccccccccccc---------
Q 045865           98 HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRG---------  168 (225)
Q Consensus        98 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~---------  168 (225)
                      .+++|++|++++|.+.+ ++   +..+++|+.|++++|.+.+. +  +.. +++|+.|++++|...+..+.         
T Consensus       104 ~l~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l-~--l~~-l~~L~~L~l~~n~~~~~~~~~~l~~L~~L  175 (457)
T 3bz5_A          104 PLTKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI-D--VSH-NTQLTELDCHLNKKITKLDVTPQTQLTTL  175 (457)
T ss_dssp             TCTTCCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC-C--CTT-CTTCCEEECTTCSCCCCCCCTTCTTCCEE
T ss_pred             CCCcCCEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee-c--ccc-CCcCCEEECCCCCcccccccccCCcCCEE
Confidence            89999999999999873 43   67788899999998887653 1  344 66666666666632222200         


Q ss_pred             ---------CCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCC
Q 045865          169 ---------QGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGT  216 (225)
Q Consensus       169 ---------~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~  216 (225)
                               ..+..+++|+.+++++|++...     .++. +++|+.|++++|++++
T Consensus       176 ~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~-----~l~~-l~~L~~L~Ls~N~l~~  226 (457)
T 3bz5_A          176 DCSFNKITELDVSQNKLLNRLNCDTNNITKL-----DLNQ-NIQLTFLDCSSNKLTE  226 (457)
T ss_dssp             ECCSSCCCCCCCTTCTTCCEEECCSSCCSCC-----CCTT-CTTCSEEECCSSCCSC
T ss_pred             ECCCCccceeccccCCCCCEEECcCCcCCee-----cccc-CCCCCEEECcCCcccc
Confidence                     0133444555555555533211     1444 6666666666666665

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.67  E-value=6.6e-17  Score=136.67  Aligned_cols=177  Identities=22%  Similarity=0.234  Sum_probs=99.1

Q ss_pred             CCCce-eecCCcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCC
Q 045865            9 QWERV-ECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNS   87 (225)
Q Consensus         9 ~~~~~-~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~   87 (225)
                      .|.++ .|.  ..+++.|++++|.+.    .++...   .++|++|++++|.+.. +|       ..+++|+.|++++|.
T Consensus        49 ~~~~l~~C~--~~~L~~L~Ls~n~L~----~lp~~l---~~~L~~L~Ls~N~l~~-ip-------~~l~~L~~L~Ls~N~  111 (571)
T 3cvr_A           49 AVSLLKECL--INQFSELQLNRLNLS----SLPDNL---PPQITVLEITQNALIS-LP-------ELPASLEYLDACDNR  111 (571)
T ss_dssp             HHHHHHHHH--HTTCSEEECCSSCCS----CCCSCC---CTTCSEEECCSSCCSC-CC-------CCCTTCCEEECCSSC
T ss_pred             hhhhccccc--cCCccEEEeCCCCCC----ccCHhH---cCCCCEEECcCCCCcc-cc-------cccCCCCEEEccCCC
Confidence            35555 454  236677777777665    333322   2456666666666553 22       124555555555555


Q ss_pred             CChhhHHhhh------------------cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhC
Q 045865           88 FNNSILSSLT------------------HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIF  149 (225)
Q Consensus        88 l~~~~~~~l~------------------~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~  149 (225)
                      +++ +|. +.                  .+++|+.|++++|.+. .+|.    .+++|+.|++++|.+.+ +|. +   .
T Consensus       112 l~~-ip~-l~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-l---~  179 (571)
T 3cvr_A          112 LST-LPE-LPASLKHLDVDNNQLTMLPELPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-L---P  179 (571)
T ss_dssp             CSC-CCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-C---C
T ss_pred             CCC-cch-hhcCCCEEECCCCcCCCCCCcCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-cch-h---h
Confidence            544 222 22                  2344444555544444 2332    33455555665555543 222 1   2


Q ss_pred             CCCCEEeccccccccccccCCCCCCCCC-------cEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865          150 PSLKNLSMSFCEVNGVVRGQGFPHFKSL-------EHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL  222 (225)
Q Consensus       150 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L-------~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~  222 (225)
                      ++|+.|++++|.++ .+|.  +..  +|       +.|++++|+|   ..+|..+.. +++|+.|++++|+|++.+|..+
T Consensus       180 ~~L~~L~Ls~N~L~-~lp~--~~~--~L~~~~~~L~~L~Ls~N~l---~~lp~~l~~-l~~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          180 ESLEALDVSTNLLE-SLPA--VPV--RNHHSEETEIFFRCRENRI---THIPENILS-LDPTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             TTCCEEECCSSCCS-SCCC--CC----------CCEEEECCSSCC---CCCCGGGGG-SCTTEEEECCSSSCCHHHHHHH
T ss_pred             CCCCEEECcCCCCC-chhh--HHH--hhhcccccceEEecCCCcc---eecCHHHhc-CCCCCEEEeeCCcCCCcCHHHH
Confidence            55666666666665 3333  222  55       8888888865   356777888 9999999999999998888766


Q ss_pred             c
Q 045865          223 H  223 (225)
Q Consensus       223 ~  223 (225)
                      .
T Consensus       251 ~  251 (571)
T 3cvr_A          251 S  251 (571)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.67  E-value=3.2e-16  Score=133.60  Aligned_cols=152  Identities=19%  Similarity=0.317  Sum_probs=128.4

Q ss_pred             hcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhcc
Q 045865           44 FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHN  123 (225)
Q Consensus        44 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  123 (225)
                      +..+++|+.|++++|.+.. .+.     +..+++|+.|+|++|.+.+..+  +..+++|+.|++++|.+. .++  .+..
T Consensus        39 ~~~L~~L~~L~l~~n~i~~-l~~-----l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~--~l~~  107 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKS-VQG-----IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS--SLKD  107 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCC-CTT-----GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT--TSTT
T ss_pred             hhcCCCCCEEECcCCCCCC-ChH-----HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh--hhcc
Confidence            3457788999999999876 343     7899999999999999988554  889999999999999987 444  6888


Q ss_pred             CCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCC
Q 045865          124 FTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPS  203 (225)
Q Consensus       124 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~  203 (225)
                      +++|+.|+|++|.+.+.  ..+.. +++|+.|++++|.+++.  . .+..+++|+.|++++|++  .+..+  +.. +++
T Consensus       108 l~~L~~L~Ls~N~l~~l--~~l~~-l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~l--~~~~~--l~~-l~~  176 (605)
T 1m9s_A          108 LKKLKSLSLEHNGISDI--NGLVH-LPQLESLYLGNNKITDI--T-VLSRLTKLDTLSLEDNQI--SDIVP--LAG-LTK  176 (605)
T ss_dssp             CTTCCEEECTTSCCCCC--GGGGG-CTTCSEEECCSSCCCCC--G-GGGSCTTCSEEECCSSCC--CCCGG--GTT-CTT
T ss_pred             CCCCCEEEecCCCCCCC--ccccC-CCccCEEECCCCccCCc--h-hhcccCCCCEEECcCCcC--CCchh--hcc-CCC
Confidence            99999999999998753  34666 99999999999999854  3 688999999999999965  33333  777 999


Q ss_pred             CcEEEccCCcCCCc
Q 045865          204 LKYLLLSYSTLGTN  217 (225)
Q Consensus       204 L~~L~l~~n~l~~~  217 (225)
                      |+.|+|++|+|++.
T Consensus       177 L~~L~Ls~N~i~~l  190 (605)
T 1m9s_A          177 LQNLYLSKNHISDL  190 (605)
T ss_dssp             CCEEECCSSCCCBC
T ss_pred             CCEEECcCCCCCCC
Confidence            99999999999975

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=2.9e-17  Score=142.94  Aligned_cols=193  Identities=21%  Similarity=0.156  Sum_probs=114.8

Q ss_pred             cCCCceeecCCcCceEEeeccccccccchhHHhhhhhcCCCCccE-----EEccCCcccCcchhhHHHHHhcCCCCCEEE
Q 045865            8 CQWERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLES-----LDLTQNKIAGCVENEGIERLSRLNNLKMLN   82 (225)
Q Consensus         8 c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~-----L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~   82 (225)
                      ..|.+..+.  .++++.|++.++.+..    .....+. ...|..     +++..|.+.. .+.    .+..++.|+.|+
T Consensus       163 ~~~~~~~~s--~~~~~~l~L~~n~~~~----~~~~~l~-~l~Ls~~~i~~~~~~~n~~~~-~~~----~~~~l~~L~~L~  230 (727)
T 4b8c_D          163 GTATNSAVS--TPLTPKIELFANGKDE----ANQALLQ-HKKLSQYSIDEDDDIENRMVM-PKD----SKYDDQLWHALD  230 (727)
T ss_dssp             -----------------------------------------------------------------------CCCCCCEEE
T ss_pred             ccCCCceec--CCccceEEeeCCCCCc----chhhHhh-cCccCcccccCccccccceec-Chh----hhccCCCCcEEE
Confidence            344444443  3578999999988763    2222222 122222     3333333331 233    578899999999


Q ss_pred             CCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEecccccc
Q 045865           83 LSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEV  162 (225)
Q Consensus        83 l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~  162 (225)
                      |++|.+.. ++..+..++.|++|++++|.+. .+|. .+..+++|+.|+|++|.+. .+|..+.. +++|+.|++++|.+
T Consensus       231 Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~N~l  305 (727)
T 4b8c_D          231 LSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPA-EIKNLSNLRVLDLSHNRLT-SLPAELGS-CFQLKYFYFFDNMV  305 (727)
T ss_dssp             CTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCG-GGGGGTTCCEEECTTSCCS-SCCSSGGG-GTTCSEEECCSSCC
T ss_pred             CCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccCh-hhhCCCCCCEEeCcCCcCC-ccChhhcC-CCCCCEEECCCCCC
Confidence            99999985 5666679999999999999998 7886 7899999999999999998 66777877 99999999999999


Q ss_pred             ccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCC-CCcEEEccCCcCCCccchhh
Q 045865          163 NGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMP-SLKYLLLSYSTLGTNSSRIL  222 (225)
Q Consensus       163 ~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~-~L~~L~l~~n~l~~~~~~~~  222 (225)
                      + .+|. .|+.+++|+.|+|++|+  +.+..|..+.. +. .+..+++.+|.+++.+|..+
T Consensus       306 ~-~lp~-~~~~l~~L~~L~L~~N~--l~~~~p~~~~~-~~~~~~~l~l~~N~l~~~~p~~l  361 (727)
T 4b8c_D          306 T-TLPW-EFGNLCNLQFLGVEGNP--LEKQFLKILTE-KSVTGLIFYLRDNRPEIPLPHER  361 (727)
T ss_dssp             C-CCCS-STTSCTTCCCEECTTSC--CCSHHHHHHHH-HHHHHHHHHHHHCCCCCCCCCC-
T ss_pred             C-ccCh-hhhcCCCccEEeCCCCc--cCCCChHHHhh-cchhhhHHhhccCcccCcCcccc
Confidence            7 7777 69999999999999995  45666666644 21 12246778888888777654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.65  E-value=2.3e-16  Score=113.24  Aligned_cols=138  Identities=17%  Similarity=0.190  Sum_probs=97.1

Q ss_pred             CCCCCEEECCCCCCC-hhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCC
Q 045865           75 LNNLKMLNLSGNSFN-NSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLK  153 (225)
Q Consensus        75 l~~L~~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~  153 (225)
                      .++|++|++++|.+. +.+|..+..+++|++|++++|.+. .+ . .+..+++|+.|++++|.+.+..+..+.. +++|+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~   98 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-S-NLPKLPKLKKLELSENRIFGGLDMLAEK-LPNLT   98 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-S-SCCCCSSCCEEEEESCCCCSCCCHHHHH-CTTCC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-h-hhccCCCCCEEECcCCcCchHHHHHHhh-CCCCC
Confidence            356666666666665 334555566677777777777765 33 2 6667778888888888777545566666 89999


Q ss_pred             EEeccccccccccccCCCCCCCCCcEEEccCCccccchhHH-HHHhhcCCCCcEEEccCCcCCCc
Q 045865          154 NLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFL-QIIGESMPSLKYLLLSYSTLGTN  217 (225)
Q Consensus       154 ~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~-~~l~~~~~~L~~L~l~~n~l~~~  217 (225)
                      .|++++|.+++......+..+++|+.|++++|++.....+. ..+.. +++|+.|++++|.+...
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKL-LPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTT-CSSCCEETTEETTSCBC
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHh-CccCcEecCCCCChhhc
Confidence            99999998875432137888999999999999663222211 36777 99999999999998743

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.62  E-value=2.1e-15  Score=115.97  Aligned_cols=145  Identities=23%  Similarity=0.312  Sum_probs=121.9

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH   98 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~   98 (225)
                      ...++.|++++|.+.    .++  .+..+++|++|++++|.+.. .++     +..+++|++|++++|.+.+. +. +..
T Consensus        40 l~~L~~L~l~~n~i~----~l~--~l~~l~~L~~L~L~~N~i~~-~~~-----l~~l~~L~~L~L~~N~l~~l-~~-~~~  105 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQ----SLA--GMQFFTNLKELHLSHNQISD-LSP-----LKDLTKLEELSVNRNRLKNL-NG-IPS  105 (263)
T ss_dssp             HTTCSEEECTTSCCC----CCT--TGGGCTTCCEEECCSSCCCC-CGG-----GTTCSSCCEEECCSSCCSCC-TT-CCC
T ss_pred             cCcCcEEECcCCCcc----cch--HHhhCCCCCEEECCCCccCC-Chh-----hccCCCCCEEECCCCccCCc-Cc-ccc
Confidence            468899999999987    443  57889999999999999987 343     78899999999999999873 32 223


Q ss_pred             CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc
Q 045865           99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE  178 (225)
Q Consensus        99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  178 (225)
                       ++|++|++++|.+. .++  .+..+++|+.|++++|.+.+. + .+.. +++|+.|++++|.+++.  . .+..+++|+
T Consensus       106 -~~L~~L~L~~N~l~-~~~--~l~~l~~L~~L~Ls~N~i~~~-~-~l~~-l~~L~~L~L~~N~i~~~--~-~l~~l~~L~  175 (263)
T 1xeu_A          106 -ACLSRLFLDNNELR-DTD--SLIHLKNLEILSIRNNKLKSI-V-MLGF-LSKLEVLDLHGNEITNT--G-GLTRLKKVN  175 (263)
T ss_dssp             -SSCCEEECCSSCCS-BSG--GGTTCTTCCEEECTTSCCCBC-G-GGGG-CTTCCEEECTTSCCCBC--T-TSTTCCCCC
T ss_pred             -CcccEEEccCCccC-CCh--hhcCcccccEEECCCCcCCCC-h-HHcc-CCCCCEEECCCCcCcch--H-HhccCCCCC
Confidence             89999999999997 444  688899999999999999854 2 5666 99999999999999855  3 789999999


Q ss_pred             EEEccCCcc
Q 045865          179 HFDMRFARI  187 (225)
Q Consensus       179 ~l~l~~n~i  187 (225)
                      .+++++|++
T Consensus       176 ~L~l~~N~~  184 (263)
T 1xeu_A          176 WIDLTGQKC  184 (263)
T ss_dssp             EEEEEEEEE
T ss_pred             EEeCCCCcc
Confidence            999999965

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=1.4e-15  Score=106.88  Aligned_cols=130  Identities=18%  Similarity=0.224  Sum_probs=84.8

Q ss_pred             CCCCEEECCCCCCC-hhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCE
Q 045865           76 NNLKMLNLSGNSFN-NSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKN  154 (225)
Q Consensus        76 ~~L~~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~  154 (225)
                      ++|+.|++++|.+. +..+..+..+++|++|++++|.+.+ +  ..+..+++|+.|++++|.+.+..+..+.. +++|+.
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~   92 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-CPNLTH   92 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-CTTCCE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c--hhhhcCCCCCEEECCCCcccchHHHHhhh-CCCCCE
Confidence            45566666666554 3344455566666666666666652 2  25666777777777777776545666666 788888


Q ss_pred             Eecccccccccc-ccCCCCCCCCCcEEEccCCccccchhHH-HHHhhcCCCCcEEEccC
Q 045865          155 LSMSFCEVNGVV-RGQGFPHFKSLEHFDMRFARIALNTSFL-QIIGESMPSLKYLLLSY  211 (225)
Q Consensus       155 L~l~~n~~~~~~-~~~~~~~~~~L~~l~l~~n~i~~~~~~~-~~l~~~~~~L~~L~l~~  211 (225)
                      |++++|.+++.. +. .+..+++|+.+++++|++.....++ ..+.. +++|+.|++++
T Consensus        93 L~ls~N~i~~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDLSTIE-PLKKLENLKSLDLFNCEVTNLNDYRENVFKL-LPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSHHHHG-GGGGCTTCCEEECTTCGGGGSTTHHHHHHHH-CTTCCEETTBC
T ss_pred             EECCCCcCCChHHHH-HHhhCCCCCEEeCcCCcccchHHHHHHHHHH-CCCcccccCCC
Confidence            888888877532 24 6778888888888888653322221 35666 88888888763

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.61  E-value=8.7e-16  Score=112.69  Aligned_cols=129  Identities=18%  Similarity=0.227  Sum_probs=104.4

Q ss_pred             cEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHH-hhhcCCCCCEEEcCCCCCCCccchhhhccCCCCce
Q 045865           51 ESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILS-SLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEY  129 (225)
Q Consensus        51 ~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  129 (225)
                      ++++++++.+.. +|.    .+  .+++++|++++|.+....+. .+..+++|++|++++|.+.+..+. .+..+++|+.
T Consensus        11 ~~l~~s~~~l~~-ip~----~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~   82 (192)
T 1w8a_A           11 TTVDCTGRGLKE-IPR----DI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN-AFEGASHIQE   82 (192)
T ss_dssp             TEEECTTSCCSS-CCS----CC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT-TTTTCTTCCE
T ss_pred             CEEEcCCCCcCc-Ccc----CC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh-HcCCcccCCE
Confidence            688999998866 554    23  34899999999999875553 478899999999999999844444 8888999999


Q ss_pred             eecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCcccc
Q 045865          130 LTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIAL  189 (225)
Q Consensus       130 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~  189 (225)
                      |++++|.+.+..+..+.. +++|+.|++++|.+++..+. .+..+++|+.+++++|++..
T Consensus        83 L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           83 LQLGENKIKEISNKMFLG-LHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             EECCSCCCCEECSSSSTT-CTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCBCC
T ss_pred             EECCCCcCCccCHHHhcC-CCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCCccC
Confidence            999999988655555666 89999999999999876666 88899999999999996643

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=1.3e-15  Score=107.16  Aligned_cols=89  Identities=26%  Similarity=0.340  Sum_probs=39.4

Q ss_pred             hcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhcc
Q 045865           44 FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHN  123 (225)
Q Consensus        44 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  123 (225)
                      +..+++|++|++++|.+...  .    .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+......+..
T Consensus        38 ~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~  111 (149)
T 2je0_A           38 TDEFEELEFLSTINVGLTSI--A----NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKK  111 (149)
T ss_dssp             CTTCTTCCEEECTTSCCCCC--T----TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGG
T ss_pred             HhhcCCCcEEECcCCCCCCc--h----hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhh
Confidence            34444455555555444432  1    24444455555555554444344444444445555555544432111113444


Q ss_pred             CCCCceeecCCCCCc
Q 045865          124 FTNLEYLTLESSSLH  138 (225)
Q Consensus       124 l~~L~~l~l~~~~~~  138 (225)
                      +++|+.|++++|.+.
T Consensus       112 l~~L~~L~l~~N~l~  126 (149)
T 2je0_A          112 LENLKSLDLFNCEVT  126 (149)
T ss_dssp             CTTCCEEECTTCGGG
T ss_pred             CCCCCEEeCcCCccc
Confidence            444444444444443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.60  E-value=1.8e-15  Score=129.27  Aligned_cols=85  Identities=15%  Similarity=0.095  Sum_probs=62.0

Q ss_pred             CCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCC
Q 045865          125 TNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSL  204 (225)
Q Consensus       125 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L  204 (225)
                      ++|+.|++++|.+.+ ++   .. +++|+.|++++|.++ .++.    .+++|+.|++++|++.   .+|..+.. +++|
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~-l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~---~lp~~l~~-l~~L  286 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VL-PSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT---RLPESLIH-LSSE  286 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CC-CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC---SCCGGGGG-SCTT
T ss_pred             CCCCEEEccCCccCc-CC---CC-CCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC---cCCHHHhh-cccc
Confidence            456677777776653 22   22 677777777777776 3333    4678999999999663   66777888 9999


Q ss_pred             cEEEccCCcCCCccchhhc
Q 045865          205 KYLLLSYSTLGTNSSRILH  223 (225)
Q Consensus       205 ~~L~l~~n~l~~~~~~~~~  223 (225)
                      +.|++++|++++..|..+.
T Consensus       287 ~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          287 TTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             CEEECCSCCCCHHHHHHHH
T ss_pred             CEEEecCCCCCCcCHHHHH
Confidence            9999999999988877653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.60  E-value=1.6e-15  Score=128.20  Aligned_cols=113  Identities=19%  Similarity=0.260  Sum_probs=77.3

Q ss_pred             CCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCC
Q 045865           48 QQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNL  127 (225)
Q Consensus        48 ~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  127 (225)
                      .+++.|++++|.+.+ +|.    .+  +++|++|++++|.++. +|   ..+++|++|++++|.+. .+|.  +..  +|
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~----~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~-~ip~--l~~--~L  122 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPD----NL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLS-TLPE--LPA--SL  122 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCS----CC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC--CCT--TC
T ss_pred             CCccEEEeCCCCCCc-cCH----hH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCC-Ccch--hhc--CC
Confidence            389999999999987 555    23  4899999999999985 44   45788999999999887 4553  322  67


Q ss_pred             ceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCc
Q 045865          128 EYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFAR  186 (225)
Q Consensus       128 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~  186 (225)
                      +.|++++|.+.+ +|.   . +++|+.|++++|.+++ ++.    .+++|+.|++++|+
T Consensus       123 ~~L~Ls~N~l~~-lp~---~-l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~  171 (571)
T 3cvr_A          123 KHLDVDNNQLTM-LPE---L-PALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQ  171 (571)
T ss_dssp             CEEECCSSCCSC-CCC---C-CTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSC
T ss_pred             CEEECCCCcCCC-CCC---c-CccccEEeCCCCccCc-CCC----cCCCcCEEECCCCC
Confidence            777777777664 333   3 5666666666666653 222    23445555555553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=1.5e-15  Score=108.94  Aligned_cols=133  Identities=25%  Similarity=0.208  Sum_probs=59.5

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL   99 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l   99 (225)
                      ..+++|++++|.+..+  .+ +..+..+++|++|++++|.+...  .    .+..+++|++|++++|.+....+..+..+
T Consensus        24 ~~L~~L~l~~n~l~~~--~i-~~~~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l   94 (168)
T 2ell_A           24 AAVRELVLDNCKSNDG--KI-EGLTAEFVNLEFLSLINVGLISV--S----NLPKLPKLKKLELSENRIFGGLDMLAEKL   94 (168)
T ss_dssp             TSCSEEECCSCBCBTT--BC-SSCCGGGGGCCEEEEESSCCCCC--S----SCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred             ccCCEEECCCCCCChh--hH-HHHHHhCCCCCEEeCcCCCCCCh--h----hhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence            3455555555554311  11 22234445555555555554442  1    24445555555555555544344444445


Q ss_pred             CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHH---HHHHhhCCCCCEEecccccc
Q 045865          100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLL---QSIASIFPSLKNLSMSFCEV  162 (225)
Q Consensus       100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~n~~  162 (225)
                      ++|++|++++|.+.+......+..+++|+.|++++|.+.+..+   ..+.. +++|+.|++++|.+
T Consensus        95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-l~~L~~L~l~~n~~  159 (168)
T 2ell_A           95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKL-LPQLTYLDGYDRED  159 (168)
T ss_dssp             TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTT-CSSCCEETTEETTS
T ss_pred             CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHh-CccCcEecCCCCCh
Confidence            5555555555554421111244444555555555554442211   12333 45555555555444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.59  E-value=1.2e-15  Score=112.01  Aligned_cols=131  Identities=18%  Similarity=0.180  Sum_probs=99.3

Q ss_pred             EEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCC
Q 045865           23 IALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL  102 (225)
Q Consensus        23 ~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L  102 (225)
                      +.++++++++.    +++....   ..+++|++++|.+....+..   .+..+++|++|++++|.+++..+..+..+++|
T Consensus        11 ~~l~~s~~~l~----~ip~~~~---~~l~~L~l~~n~i~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   80 (192)
T 1w8a_A           11 TTVDCTGRGLK----EIPRDIP---LHTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASHI   80 (192)
T ss_dssp             TEEECTTSCCS----SCCSCCC---TTCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             CEEEcCCCCcC----cCccCCC---CCCCEEECCCCcCCccCCcc---ccccCCCCCEEECCCCCCCCcCHhHcCCcccC
Confidence            57788888776    4444332   27788888888887754431   26788888888888888888778888888888


Q ss_pred             CEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccc
Q 045865          103 RSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGV  165 (225)
Q Consensus       103 ~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  165 (225)
                      ++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+.+.
T Consensus        81 ~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           81 QELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH-LNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CEEECCSCCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTT-CTTCCEEECTTCCBCCS
T ss_pred             CEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhc-CCCCCEEEeCCCCccCc
Confidence            88888888887 444436778888888888888887665666666 88888888888887643

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.59  E-value=5.3e-15  Score=119.20  Aligned_cols=171  Identities=19%  Similarity=0.270  Sum_probs=105.2

Q ss_pred             CCccEEEccCCcccCcchhhHHHHHhc-CCCCCEEECCCCCCChhhHHhhh-cCCCCCEEEcCCCCCCCccchhhh----
Q 045865           48 QQLESLDLTQNKIAGCVENEGIERLSR-LNNLKMLNLSGNSFNNSILSSLT-HLSSLRSLNLLWNRLEGSIDVKEL----  121 (225)
Q Consensus        48 ~~L~~L~l~~n~i~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~----  121 (225)
                      +.|+.|++++|.+...........+.. .++|++|++++|.++......+. .+.+|+.|++++|.+.+. ....+    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~-~~~~L~~~L  150 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPE-ACKDLRDLL  150 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHH-HHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHH-HHHHHHHHH
Confidence            456777888877765433322223332 25788888888877654443333 345778888888877522 22122    


Q ss_pred             -ccCCCCceeecCCCCCcHHH----HHHHHhhCCCCCEEecccccccccc----ccCCCCCCCCCcEEEccCCccccch-
Q 045865          122 -HNFTNLEYLTLESSSLHISL----LQSIASIFPSLKNLSMSFCEVNGVV----RGQGFPHFKSLEHFDMRFARIALNT-  191 (225)
Q Consensus       122 -~~l~~L~~l~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~~L~~l~l~~n~i~~~~-  191 (225)
                       ...++|+.|++++|.+.+..    +..+.. +++|++|++++|.+.+..    .. .+..+++|+.|++++|.|...+ 
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~-~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~~~g~  228 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAG-NTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYNGAGDTAA  228 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHT-CSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSSCCCHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhc-CCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCCCCCHHHH
Confidence             23467888888888776432    333455 677888888888776322    22 4555667888888888553322 


Q ss_pred             -hHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865          192 -SFLQIIGESMPSLKYLLLSYSTLGTNSSRIL  222 (225)
Q Consensus       192 -~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~  222 (225)
                       .+...+.. +++|+.|+|++|.|++.....+
T Consensus       229 ~~l~~~L~~-~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          229 LALARAARE-HPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             HHHHHHHHH-CSSCCEEECTTSSCCHHHHHHH
T ss_pred             HHHHHHHHh-CCCCCEEeccCCCCCHHHHHHH
Confidence             34455556 7788888888888876655544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.58  E-value=1.1e-14  Score=124.01  Aligned_cols=147  Identities=15%  Similarity=0.184  Sum_probs=100.7

Q ss_pred             hcCCCCCEEECCCCCCChhhHHhhhc-CCCCCEEEcC----CCCCCCc-----cchhhhccCCCCceeecCCC--CCcHH
Q 045865           73 SRLNNLKMLNLSGNSFNNSILSSLTH-LSSLRSLNLL----WNRLEGS-----IDVKELHNFTNLEYLTLESS--SLHIS  140 (225)
Q Consensus        73 ~~l~~L~~L~l~~~~l~~~~~~~l~~-l~~L~~L~l~----~n~~~~~-----~~~~~~~~l~~L~~l~l~~~--~~~~~  140 (225)
                      ..+++|++|+++.+.+++..+..+.. +++|+.|++.    .+.+.+.     ++. .+..+++|+.|+++.|  .+.+.
T Consensus       375 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~-~~~~~~~L~~L~L~~~~~~l~~~  453 (592)
T 3ogk_B          375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS-LLIGCKKLRRFAFYLRQGGLTDL  453 (592)
T ss_dssp             HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH-HHHHCTTCCEEEEECCGGGCCHH
T ss_pred             hhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH-HHHhCCCCCEEEEecCCCCccHH
Confidence            34666666666666666555555544 6777777775    4444421     111 3556788888888643  36666


Q ss_pred             HHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchh-HHHHHhhcCCCCcEEEccCCcCCCccc
Q 045865          141 LLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTS-FLQIIGESMPSLKYLLLSYSTLGTNSS  219 (225)
Q Consensus       141 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~-~~~~l~~~~~~L~~L~l~~n~l~~~~~  219 (225)
                      .+..+...+++|+.|++++|.+++......+.++++|++|++++|++  .+. ++..+.. +++|+.|++++|++++...
T Consensus       454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~~~-l~~L~~L~ls~n~it~~~~  530 (592)
T 3ogk_B          454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF--SERAIAAAVTK-LPSLRYLWVQGYRASMTGQ  530 (592)
T ss_dssp             HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC--BHHHHHHHHHH-CSSCCEEEEESCBCCTTCT
T ss_pred             HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC--cHHHHHHHHHh-cCccCeeECcCCcCCHHHH
Confidence            66666655889999999999887543332567889999999999964  433 4444556 9999999999999998755


Q ss_pred             hhhc
Q 045865          220 RILH  223 (225)
Q Consensus       220 ~~~~  223 (225)
                      +.++
T Consensus       531 ~~l~  534 (592)
T 3ogk_B          531 DLMQ  534 (592)
T ss_dssp             TGGG
T ss_pred             HHHH
Confidence            5544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.57  E-value=7.7e-16  Score=130.42  Aligned_cols=182  Identities=19%  Similarity=0.223  Sum_probs=123.4

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCc-------------ccCcchhhHHHHHhcCCCCCEEE-CC
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNK-------------IAGCVENEGIERLSRLNNLKMLN-LS   84 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-------------i~~~~~~~~~~~~~~l~~L~~L~-l~   84 (225)
                      ...++.|++++|++.    .+ +..+..+++|++|++++|.             +.+..|.    .+..+++|+.|+ ++
T Consensus       348 ~~~L~~L~Ls~n~L~----~L-p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~----~l~~l~~L~~L~~l~  418 (567)
T 1dce_A          348 DEQLFRCELSVEKST----VL-QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE----TLQYFSTLKAVDPMR  418 (567)
T ss_dssp             TTTSSSCCCCHHHHH----HH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHH----HHHHHHHHHHHCGGG
T ss_pred             CccceeccCChhhHH----hh-HHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHH----HHHHHHhcccCcchh
Confidence            346678889999885    44 4566888899999886653             2232333    456666777776 44


Q ss_pred             CCCCChhhH-----Hhhhc--CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEec
Q 045865           85 GNSFNNSIL-----SSLTH--LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSM  157 (225)
Q Consensus        85 ~~~l~~~~~-----~~l~~--l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l  157 (225)
                      .+.+.....     ..+..  ...|+.|++++|.+. .+|  .+..+++|+.|++++|.+. .+|..+.. +++|+.|++
T Consensus       419 ~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp--~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L  493 (567)
T 1dce_A          419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLC--HLEQLLLVTHLDLSHNRLR-ALPPALAA-LRCLEVLQA  493 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCC--CGGGGTTCCEEECCSSCCC-CCCGGGGG-CTTCCEEEC
T ss_pred             hcccchhhhhhhhcccccccCccCceEEEecCCCCC-CCc--CccccccCcEeecCccccc-ccchhhhc-CCCCCEEEC
Confidence            443321100     01111  135788888888886 455  3777888888888888877 55666776 888888888


Q ss_pred             cccccccccccCCCCCCCCCcEEEccCCccccchhH-HHHHhhcCCCCcEEEccCCcCCCccch
Q 045865          158 SFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSF-LQIIGESMPSLKYLLLSYSTLGTNSSR  220 (225)
Q Consensus       158 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~-~~~l~~~~~~L~~L~l~~n~l~~~~~~  220 (225)
                      ++|.+++ +|  .++++++|+.|++++|++  .+.. |..++. +++|+.|++++|+|++.+|.
T Consensus       494 s~N~l~~-lp--~l~~l~~L~~L~Ls~N~l--~~~~~p~~l~~-l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          494 SDNALEN-VD--GVANLPRLQELLLCNNRL--QQSAAIQPLVS-CPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             CSSCCCC-CG--GGTTCSSCCEEECCSSCC--CSSSTTGGGGG-CTTCCEEECTTSGGGGSSSC
T ss_pred             CCCCCCC-Cc--ccCCCCCCcEEECCCCCC--CCCCCcHHHhc-CCCCCEEEecCCcCCCCccH
Confidence            8888874 44  577888888888888855  3332 667777 88888888888888876553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.57  E-value=9.7e-16  Score=133.40  Aligned_cols=160  Identities=18%  Similarity=0.171  Sum_probs=104.0

Q ss_pred             CCccEEEccCCcccCcchhhHHHHHhcCCCCCEEEC-----CCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhc
Q 045865           48 QQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNL-----SGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELH  122 (225)
Q Consensus        48 ~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l-----~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  122 (225)
                      +.++.|++..+.+.. .+.    .+.....|+.+.+     ..+.+. ..+..+..+..|+.|++++|.+. .++. .+.
T Consensus       173 ~~~~~l~L~~n~~~~-~~~----~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~-~~~  244 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQ----ALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISA-NIF  244 (727)
T ss_dssp             -------------------------------------------------------CCCCCCEEECTTSCCS-CCCG-GGG
T ss_pred             CccceEEeeCCCCCc-chh----hHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCCh-hhc
Confidence            456778888877765 232    1222233333332     223332 35677888999999999999997 7776 566


Q ss_pred             cCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCC
Q 045865          123 NFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMP  202 (225)
Q Consensus       123 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~  202 (225)
                      .+++|+.|+|++|.+. .+|..+.. +++|+.|++++|.++ .+|. .++++++|++|+|++|.|   ..+|..++. ++
T Consensus       245 ~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~N~l---~~lp~~~~~-l~  316 (727)
T 4b8c_D          245 KYDFLTRLYLNGNSLT-ELPAEIKN-LSNLRVLDLSHNRLT-SLPA-ELGSCFQLKYFYFFDNMV---TTLPWEFGN-LC  316 (727)
T ss_dssp             GCCSCSCCBCTTSCCS-CCCGGGGG-GTTCCEEECTTSCCS-SCCS-SGGGGTTCSEEECCSSCC---CCCCSSTTS-CT
T ss_pred             CCCCCCEEEeeCCcCc-ccChhhhC-CCCCCEEeCcCCcCC-ccCh-hhcCCCCCCEEECCCCCC---CccChhhhc-CC
Confidence            8999999999999998 67777777 999999999999998 6777 899999999999999976   467877888 99


Q ss_pred             CCcEEEccCCcCCCccchhhc
Q 045865          203 SLKYLLLSYSTLGTNSSRILH  223 (225)
Q Consensus       203 ~L~~L~l~~n~l~~~~~~~~~  223 (225)
                      +|+.|+|++|.|++.+|.++.
T Consensus       317 ~L~~L~L~~N~l~~~~p~~~~  337 (727)
T 4b8c_D          317 NLQFLGVEGNPLEKQFLKILT  337 (727)
T ss_dssp             TCCCEECTTSCCCSHHHHHHH
T ss_pred             CccEEeCCCCccCCCChHHHh
Confidence            999999999999999998763

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.55  E-value=2.4e-14  Score=121.83  Aligned_cols=96  Identities=14%  Similarity=0.102  Sum_probs=49.9

Q ss_pred             hccCCCCceeecCCCCCcHHHHHH-HHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEcc-----------CCccc
Q 045865          121 LHNFTNLEYLTLESSSLHISLLQS-IASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMR-----------FARIA  188 (225)
Q Consensus       121 ~~~l~~L~~l~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~-----------~n~i~  188 (225)
                      +..+++|+.|++++|.+.+..... +.. +++|+.|++. +.+.+......+..+++|+.|+++           ++.+ 
T Consensus       289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~-~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~-  365 (592)
T 3ogk_B          289 FPFAAQIRKLDLLYALLETEDHCTLIQK-CPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV-  365 (592)
T ss_dssp             GGGGGGCCEEEETTCCCCHHHHHHHHTT-CTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC-
T ss_pred             HhhcCCCcEEecCCCcCCHHHHHHHHHh-CcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCcc-
Confidence            445667888888877766554433 344 7777777776 333222222133445566666666           2322 


Q ss_pred             cchh-HHHHHhhcCCCCcEEEccCCcCCCccchh
Q 045865          189 LNTS-FLQIIGESMPSLKYLLLSYSTLGTNSSRI  221 (225)
Q Consensus       189 ~~~~-~~~~l~~~~~~L~~L~l~~n~l~~~~~~~  221 (225)
                       .+. +...... +++|+.|++..|.+++..+..
T Consensus       366 -~~~~~~~l~~~-~~~L~~L~l~~~~l~~~~~~~  397 (592)
T 3ogk_B          366 -SQRGLIALAQG-CQELEYMAVYVSDITNESLES  397 (592)
T ss_dssp             -CHHHHHHHHHH-CTTCSEEEEEESCCCHHHHHH
T ss_pred             -CHHHHHHHHhh-CccCeEEEeecCCccHHHHHH
Confidence             222 2222233 666666666556665544433

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.54  E-value=1.1e-14  Score=117.32  Aligned_cols=191  Identities=14%  Similarity=0.141  Sum_probs=131.9

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCC-CCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhh
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPF-QQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT   97 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~   97 (225)
                      ...++.|++++|.+....+...+..+... +.|++|++++|.+........   ...+++|++|++++|.++......+.
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l---~~~L~~L~~L~Ls~n~l~~~~~~~L~  147 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL---LPVFLRARKLGLQLNSLGPEACKDLR  147 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT---HHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH---HHHHHhccHhhcCCCCCCHHHHHHHH
Confidence            35789999999999865445555555543 799999999999865433321   23456899999999999875555442


Q ss_pred             -----cCCCCCEEEcCCCCCCCc----cchhhhccCCCCceeecCCCCCcHHH----HHHHHhhCCCCCEEecccccccc
Q 045865           98 -----HLSSLRSLNLLWNRLEGS----IDVKELHNFTNLEYLTLESSSLHISL----LQSIASIFPSLKNLSMSFCEVNG  164 (225)
Q Consensus        98 -----~l~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~l~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~  164 (225)
                           ..+.|+.|++++|.+.+.    ++. .+...++|++|++++|.+.+..    ...+.. +++|+.|++++|.+++
T Consensus       148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~-~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          148 DLLLHDQCQITTLRLSNNPLTAAGVAVLME-GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR-NRQLQELNVAYNGAGD  225 (372)
T ss_dssp             HHHHSTTCCCCEEECCSSCCHHHHHHHHHH-HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGG-CSCCCEEECCSSCCCH
T ss_pred             HHHHhcCCccceeeCCCCCCChHHHHHHHH-HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhc-CCCcCeEECCCCCCCH
Confidence                 468899999999998632    222 4467889999999999998654    344455 7899999999999975


Q ss_pred             cccc---CCCCCCCCCcEEEccCCccccchhHHHHHhhcCCC-----CcEEE--ccCCcCCCc
Q 045865          165 VVRG---QGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPS-----LKYLL--LSYSTLGTN  217 (225)
Q Consensus       165 ~~~~---~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~-----L~~L~--l~~n~l~~~  217 (225)
                      ....   ..+..+++|+.|++++|.|  .+.-...+.. +..     |+.+.  +..+.++..
T Consensus       226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i--~~~g~~~L~~-~~~~~~~~L~~l~~ll~~~~~~~~  285 (372)
T 3un9_A          226 TAALALARAAREHPSLELLHLYFNEL--SSEGRQVLRD-LGGAAEGGARVVVSLTEGTAVSEY  285 (372)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECTTSSC--CHHHHHHHHH-CC------CEEECCCC----CHHH
T ss_pred             HHHHHHHHHHHhCCCCCEEeccCCCC--CHHHHHHHHH-HhcCCCccchhhHhhhcCCccCHH
Confidence            3222   1445678899999999965  3444445544 321     66666  666666543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=1.2e-14  Score=106.60  Aligned_cols=102  Identities=23%  Similarity=0.320  Sum_probs=53.1

Q ss_pred             EeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCC
Q 045865           24 ALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR  103 (225)
Q Consensus        24 ~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~  103 (225)
                      .++++++++.    .++...   .+.+++|++++|.+.. +|.    .+..+++|+.|++++|.++...+..|..+++|+
T Consensus        14 ~l~~~~~~l~----~ip~~~---~~~l~~L~L~~n~i~~-ip~----~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~   81 (193)
T 2wfh_A           14 VVRCSNKGLK----VLPKGI---PRDVTELYLDGNQFTL-VPK----ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL   81 (193)
T ss_dssp             EEECTTSCCS----SCCSCC---CTTCCEEECCSSCCCS-CCG----GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             EEEcCCCCCC----cCCCCC---CCCCCEEECCCCcCch-hHH----HhhcccCCCEEECCCCcCCEeCHhHccCCCCCC
Confidence            4566666555    333322   1356666666666654 333    356666666666666666555455555556666


Q ss_pred             EEEcCCCCCCCccchhhhccCCCCceeecCCCCCc
Q 045865          104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLH  138 (225)
Q Consensus       104 ~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~  138 (225)
                      +|++++|.+. .++...+..+++|+.|++++|.+.
T Consensus        82 ~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L~~N~l~  115 (193)
T 2wfh_A           82 TLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS  115 (193)
T ss_dssp             EEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             EEECCCCccC-EeCHHHhCCCCCCCEEECCCCCCC
Confidence            6666666554 333223444444444444444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=9e-14  Score=100.46  Aligned_cols=108  Identities=19%  Similarity=0.232  Sum_probs=56.9

Q ss_pred             CCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEe
Q 045865           77 NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLS  156 (225)
Q Consensus        77 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~  156 (225)
                      +|++|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+.. +++|+.|+
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-l~~L~~L~  106 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDK-LTQLKELA  106 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEE
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECCCCCccccCHHHhhC-CcccCEEE
Confidence            4444444444444333333444444555555555444 333223445555555555555554322223344 67777777


Q ss_pred             ccccccccccccCCCCCCCCCcEEEccCCcc
Q 045865          157 MSFCEVNGVVRGQGFPHFKSLEHFDMRFARI  187 (225)
Q Consensus       157 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i  187 (225)
                      +++|.+++ .+...+..+++|+.+++++|++
T Consensus       107 l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A          107 LDTNQLKS-VPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             CCSSCCSC-CCTTTTTTCTTCCEEECCSSCB
T ss_pred             CcCCcceE-eCHHHhcCCcccCEEEecCCCe
Confidence            77777763 3333567777777777777754

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=3.1e-14  Score=102.93  Aligned_cols=111  Identities=22%  Similarity=0.246  Sum_probs=62.0

Q ss_pred             CCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCC
Q 045865           48 QQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNL  127 (225)
Q Consensus        48 ~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  127 (225)
                      +.+++|++++|.+....+.    .+..+++|++|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L  102 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQL  102 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             CCCcEEEeCCCcccEeCHH----HhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc-ccCHHHhhCCccc
Confidence            4556666666666553333    3455666666666666665544445556666666666666665 3333245556666


Q ss_pred             ceeecCCCCCcHHHHHHHHhhCCCCCEEecccccccc
Q 045865          128 EYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNG  164 (225)
Q Consensus       128 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  164 (225)
                      +.|++++|.+....+..+.. +++|+.|++++|.+.+
T Consensus       103 ~~L~l~~N~l~~~~~~~~~~-l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A          103 KELALDTNQLKSVPDGIFDR-LTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CEEECCSSCCSCCCTTTTTT-CTTCCEEECCSSCBCC
T ss_pred             CEEECcCCcceEeCHHHhcC-CcccCEEEecCCCeec
Confidence            66666666655322222333 5666666666666553

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.53  E-value=5.2e-14  Score=103.28  Aligned_cols=128  Identities=19%  Similarity=0.273  Sum_probs=107.1

Q ss_pred             cEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCcee
Q 045865           51 ESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYL  130 (225)
Q Consensus        51 ~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l  130 (225)
                      ++++++++.+.. +|.    .+  .++|++|++++|.++. +|..+..+++|+.|++++|.+. .++...+..+++|+.|
T Consensus        13 ~~l~~~~~~l~~-ip~----~~--~~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L   83 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPK----GI--PRDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTL   83 (193)
T ss_dssp             TEEECTTSCCSS-CCS----CC--CTTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CEEEcCCCCCCc-CCC----CC--CCCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEE
Confidence            578999998876 554    12  4689999999999985 5688999999999999999998 5554478999999999


Q ss_pred             ecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCcccc
Q 045865          131 TLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIAL  189 (225)
Q Consensus       131 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~  189 (225)
                      ++++|.+....+..+.. +++|+.|++++|.++. ++...|..+++|+.+++++|++..
T Consensus        84 ~Ls~N~l~~i~~~~f~~-l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           84 ILSYNRLRCIPPRTFDG-LKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             ECCSSCCCBCCTTTTTT-CTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ECCCCccCEeCHHHhCC-CCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCCCCeec
Confidence            99999998665666777 9999999999999984 444478999999999999997643

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.53  E-value=2.4e-14  Score=118.35  Aligned_cols=118  Identities=19%  Similarity=0.191  Sum_probs=54.8

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL   99 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l   99 (225)
                      ..++.|++++|.+.    .++.    .+++|++|++++|.+.+ .+.       ..++|++|++++|.+++ +| .+..+
T Consensus        91 ~~L~~L~l~~n~l~----~lp~----~~~~L~~L~l~~n~l~~-l~~-------~~~~L~~L~L~~n~l~~-lp-~~~~l  152 (454)
T 1jl5_A           91 PHLESLVASCNSLT----ELPE----LPQSLKSLLVDNNNLKA-LSD-------LPPLLEYLGVSNNQLEK-LP-ELQNS  152 (454)
T ss_dssp             TTCSEEECCSSCCS----SCCC----CCTTCCEEECCSSCCSC-CCS-------CCTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred             CCCCEEEccCCcCC----cccc----ccCCCcEEECCCCccCc-ccC-------CCCCCCEEECcCCCCCC-Cc-ccCCC
Confidence            45666666666665    2221    12445555555555443 111       01355555555555554 33 35555


Q ss_pred             CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccc
Q 045865          100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN  163 (225)
Q Consensus       100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  163 (225)
                      ++|++|++++|.+. .+|. .   ..+|+.|++++|.+.+ ++ .+.. +++|+.|++++|.++
T Consensus       153 ~~L~~L~l~~N~l~-~lp~-~---~~~L~~L~L~~n~l~~-l~-~~~~-l~~L~~L~l~~N~l~  208 (454)
T 1jl5_A          153 SFLKIIDVDNNSLK-KLPD-L---PPSLEFIAAGNNQLEE-LP-ELQN-LPFLTAIYADNNSLK  208 (454)
T ss_dssp             TTCCEEECCSSCCS-CCCC-C---CTTCCEEECCSSCCSS-CC-CCTT-CTTCCEEECCSSCCS
T ss_pred             CCCCEEECCCCcCc-ccCC-C---cccccEEECcCCcCCc-Cc-cccC-CCCCCEEECCCCcCC
Confidence            55555555555554 2332 1   1245555555554442 22 2333 444444444444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.53  E-value=2.8e-14  Score=117.94  Aligned_cols=119  Identities=16%  Similarity=0.147  Sum_probs=59.7

Q ss_pred             ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCC
Q 045865           21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS  100 (225)
Q Consensus        21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~  100 (225)
                      .+++|++++|.+.    .++  .+.++++|++|++++|.+.+ .|.       ..++|++|++++|.+++ .| .+..++
T Consensus       132 ~L~~L~L~~n~l~----~lp--~~~~l~~L~~L~l~~N~l~~-lp~-------~~~~L~~L~L~~n~l~~-l~-~~~~l~  195 (454)
T 1jl5_A          132 LLEYLGVSNNQLE----KLP--ELQNSSFLKIIDVDNNSLKK-LPD-------LPPSLEFIAAGNNQLEE-LP-ELQNLP  195 (454)
T ss_dssp             TCCEEECCSSCCS----SCC--CCTTCTTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred             CCCEEECcCCCCC----CCc--ccCCCCCCCEEECCCCcCcc-cCC-------CcccccEEECcCCcCCc-Cc-cccCCC
Confidence            4555555555554    222  25556666666666665554 222       12355666666655554 22 355556


Q ss_pred             CCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccc
Q 045865          101 SLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN  163 (225)
Q Consensus       101 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  163 (225)
                      +|++|++++|.+. .+|.    ...+|+.|++++|.+. .++ .+.. +++|+.|++++|.++
T Consensus       196 ~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~n~l~-~lp-~~~~-l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          196 FLTAIYADNNSLK-KLPD----LPLSLESIVAGNNILE-ELP-ELQN-LPFLTTIYADNNLLK  250 (454)
T ss_dssp             TCCEEECCSSCCS-SCCC----CCTTCCEEECCSSCCS-SCC-CCTT-CTTCCEEECCSSCCS
T ss_pred             CCCEEECCCCcCC-cCCC----CcCcccEEECcCCcCC-ccc-ccCC-CCCCCEEECCCCcCC
Confidence            6666666665554 2221    1134555555555544 222 2333 555555555555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=1.9e-14  Score=104.00  Aligned_cols=132  Identities=23%  Similarity=0.231  Sum_probs=89.6

Q ss_pred             hhcCCCCccEEEccCCcccCcchhhHHHHHhcC-CCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhh
Q 045865           43 LFTPFQQLESLDLTQNKIAGCVENEGIERLSRL-NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKEL  121 (225)
Q Consensus        43 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  121 (225)
                      .+..+++|++|++++|.+.. .+.     +..+ ++|+.|++++|.+++.  ..+..+++|++|++++|.+. .++...+
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~~-----~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~   84 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IEN-----LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLD   84 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCC-----GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHH
T ss_pred             hcCCcCCceEEEeeCCCCch-hHH-----hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchh
Confidence            45667888888888888875 343     3443 4888888888888764  56677788888888888876 4554244


Q ss_pred             ccCCCCceeecCCCCCcHHHHH--HHHhhCCCCCEEeccccccccccccC---CCCCCCCCcEEEccCCc
Q 045865          122 HNFTNLEYLTLESSSLHISLLQ--SIASIFPSLKNLSMSFCEVNGVVRGQ---GFPHFKSLEHFDMRFAR  186 (225)
Q Consensus       122 ~~l~~L~~l~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~~~~~L~~l~l~~n~  186 (225)
                      ..+++|+.|++++|.+.. ++.  .+.. +++|+.|++++|.+. ..+..   .+..+++|+.++++.|.
T Consensus        85 ~~l~~L~~L~L~~N~i~~-~~~~~~l~~-l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           85 QALPDLTELILTNNSLVE-LGDLDPLAS-LKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             HHCTTCCEEECCSCCCCC-GGGGGGGGG-CTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             hcCCCCCEEECCCCcCCc-chhhHhhhc-CCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence            677777777777777753 332  4555 777777777777775 33331   25566777777777774

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=9.8e-14  Score=100.22  Aligned_cols=132  Identities=20%  Similarity=0.223  Sum_probs=106.5

Q ss_pred             CcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhh
Q 045865           18 TTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT   97 (225)
Q Consensus        18 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~   97 (225)
                      ....+++|++++|.+.    .+ +......++|+.|++++|.+... +     .+..+++|++|++++|.++...+..+.
T Consensus        17 ~~~~L~~L~l~~n~l~----~i-~~~~~~~~~L~~L~Ls~N~l~~~-~-----~l~~l~~L~~L~Ls~N~l~~~~~~~~~   85 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIP----VI-ENLGATLDQFDAIDFSDNEIRKL-D-----GFPLLRRLKTLLVNNNRICRIGEGLDQ   85 (176)
T ss_dssp             CTTSCEEEECTTSCCC----SC-CCGGGGTTCCSEEECCSSCCCEE-C-----CCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred             CcCCceEEEeeCCCCc----hh-HHhhhcCCCCCEEECCCCCCCcc-c-----ccccCCCCCEEECCCCcccccCcchhh
Confidence            3568999999999987    34 22323334999999999999874 3     488999999999999999886556668


Q ss_pred             cCCCCCEEEcCCCCCCCccch-hhhccCCCCceeecCCCCCcHHHHH----HHHhhCCCCCEEeccccccc
Q 045865           98 HLSSLRSLNLLWNRLEGSIDV-KELHNFTNLEYLTLESSSLHISLLQ----SIASIFPSLKNLSMSFCEVN  163 (225)
Q Consensus        98 ~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~----~~~~~~~~L~~L~l~~n~~~  163 (225)
                      .+++|++|++++|.+. .++. ..+..+++|+.|++++|.+.. .+.    .+.. +++|+.|+++.|...
T Consensus        86 ~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~-l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           86 ALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYK-VPQVRVLDFQKVKLK  153 (176)
T ss_dssp             HCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHH-CTTCSEETTEECCHH
T ss_pred             cCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHH-CCccceeCCCcCCHH
Confidence            9999999999999996 5553 367789999999999999863 333    3666 999999999999865

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.48  E-value=2.7e-15  Score=127.08  Aligned_cols=163  Identities=16%  Similarity=0.219  Sum_probs=126.0

Q ss_pred             cCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCC-------------CChhhHHhhhcCCCCCEEE-cCCC
Q 045865           45 TPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNS-------------FNNSILSSLTHLSSLRSLN-LLWN  110 (225)
Q Consensus        45 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------l~~~~~~~l~~l~~L~~L~-l~~n  110 (225)
                      ..+++|+.|++++|.+.. +|.    .++.+++|+.|++++|.             ..+..|..+..+++|+.|+ +..|
T Consensus       346 ~~~~~L~~L~Ls~n~L~~-Lp~----~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n  420 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTV-LQS----ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA  420 (567)
T ss_dssp             STTTTSSSCCCCHHHHHH-HHH----HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred             ccCccceeccCChhhHHh-hHH----HHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc
Confidence            567889999999999875 676    58889999999987764             4455677777788888887 5555


Q ss_pred             CCCCccch-----hhhcc--CCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEcc
Q 045865          111 RLEGSIDV-----KELHN--FTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMR  183 (225)
Q Consensus       111 ~~~~~~~~-----~~~~~--l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~  183 (225)
                      .+. .++.     ..+..  ...|+.|++++|.+.+ +|. +.. +++|+.|++++|.++ .+|. .++++++|+.|+++
T Consensus       421 ~~~-~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~-l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls  494 (567)
T 1dce_A          421 YLD-DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQ-LLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQAS  494 (567)
T ss_dssp             HHH-HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGG-GTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECC
T ss_pred             ccc-hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccc-cccCcEeecCccccc-ccch-hhhcCCCCCEEECC
Confidence            432 2211     01111  1358999999999885 454 776 999999999999998 7777 89999999999999


Q ss_pred             CCccccchhHHHHHhhcCCCCcEEEccCCcCCCcc-chhhc
Q 045865          184 FARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNS-SRILH  223 (225)
Q Consensus       184 ~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~-~~~~~  223 (225)
                      +|++.   .+| .++. +++|+.|++++|+|++.. |..+.
T Consensus       495 ~N~l~---~lp-~l~~-l~~L~~L~Ls~N~l~~~~~p~~l~  530 (567)
T 1dce_A          495 DNALE---NVD-GVAN-LPRLQELLLCNNRLQQSAAIQPLV  530 (567)
T ss_dssp             SSCCC---CCG-GGTT-CSSCCEEECCSSCCCSSSTTGGGG
T ss_pred             CCCCC---CCc-ccCC-CCCCcEEECCCCCCCCCCCcHHHh
Confidence            99763   356 7888 999999999999999886 77664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.47  E-value=9.4e-14  Score=118.69  Aligned_cols=21  Identities=19%  Similarity=0.056  Sum_probs=11.6

Q ss_pred             CCCCcEEEccCCcCCCccchhh
Q 045865          201 MPSLKYLLLSYSTLGTNSSRIL  222 (225)
Q Consensus       201 ~~~L~~L~l~~n~l~~~~~~~~  222 (225)
                      +++|+.|++++|.|+ .+|..+
T Consensus       260 ~~~L~~L~Ls~N~L~-~lp~~l  280 (622)
T 3g06_A          260 PSGLLSLSVYRNQLT-RLPESL  280 (622)
T ss_dssp             CTTCCEEECCSSCCC-SCCGGG
T ss_pred             cccCcEEeCCCCCCC-cCCHHH
Confidence            555666666666666 334433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.47  E-value=6.5e-16  Score=113.88  Aligned_cols=160  Identities=21%  Similarity=0.211  Sum_probs=114.4

Q ss_pred             cCCCCccEEEccCCcccCcchh--hHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhc
Q 045865           45 TPFQQLESLDLTQNKIAGCVEN--EGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELH  122 (225)
Q Consensus        45 ~~l~~L~~L~l~~n~i~~~~~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  122 (225)
                      .....++.+++..+.+.+..+.  .....+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+. .+|. .+.
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~-~~~   90 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN-LDA   90 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSS-HHH
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccc-hhh
Confidence            3444555555555554443321  000047888999999999998877 44 7778899999999999887 6665 666


Q ss_pred             cCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHH--------
Q 045865          123 NFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFL--------  194 (225)
Q Consensus       123 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~--------  194 (225)
                      .+++|+.|++++|.+.+ ++ .+.. +++|+.|++++|.++.......+..+++|+.+++++|++  .+..|        
T Consensus        91 ~~~~L~~L~L~~N~l~~-l~-~~~~-l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l--~~~~~~~~~~~~~  165 (198)
T 1ds9_A           91 VADTLEELWISYNQIAS-LS-GIEK-LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL--YNDYKENNATSEY  165 (198)
T ss_dssp             HHHHCSEEEEEEEECCC-HH-HHHH-HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH--HHHHHTTTTHHHH
T ss_pred             cCCcCCEEECcCCcCCc-CC-cccc-CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc--ccccccccchHHH
Confidence            67889999999998875 34 5666 889999999999987533312578899999999999955  33322        


Q ss_pred             --HHHhhcCCCCcEEEccCCcCCC
Q 045865          195 --QIIGESMPSLKYLLLSYSTLGT  216 (225)
Q Consensus       195 --~~l~~~~~~L~~L~l~~n~l~~  216 (225)
                        ..+.. +++|+.|+  ++.++.
T Consensus       166 ~~~~~~~-l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          166 RIEVVKR-LPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHHHHHH-CSSCSEEC--CGGGTT
T ss_pred             HHHHHHh-CCCcEEEC--CcccCH
Confidence              23677 99999987  777764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.47  E-value=6.9e-15  Score=117.67  Aligned_cols=178  Identities=17%  Similarity=0.128  Sum_probs=128.7

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccE-EEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhh
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLES-LDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT   97 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~-L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~   97 (225)
                      ..++++|++++|++.+   .+++..|.+++.+.+ +.+..|.+....+.    .|..+++|++|++++|.+....+..+.
T Consensus        53 l~~L~~L~Ls~N~i~~---~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~----~f~~l~~L~~L~l~~n~l~~~~~~~~~  125 (350)
T 4ay9_X           53 FGDLEKIEISQNDVLE---VIEADVFSNLPKLHEIRIEKANNLLYINPE----AFQNLPNLQYLLISNTGIKHLPDVHKI  125 (350)
T ss_dssp             CTTCCEEEEECCTTCC---EECTTSBCSCTTCCEEEEEEETTCCEECTT----SBCCCTTCCEEEEEEECCSSCCCCTTC
T ss_pred             CCCCCEEECcCCCCCC---ccChhHhhcchhhhhhhcccCCcccccCch----hhhhccccccccccccccccCCchhhc
Confidence            4689999999999763   567778899988776 55567888875555    588999999999999999875555555


Q ss_pred             cCCCCCEEEcCCC-CCCCccchhhhccCC-CCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCC
Q 045865           98 HLSSLRSLNLLWN-RLEGSIDVKELHNFT-NLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFK  175 (225)
Q Consensus        98 ~l~~L~~L~l~~n-~~~~~~~~~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  175 (225)
                      ...++..+++.++ .+. .++...+..+. .++.|++++|.+.. ++...+. ..+|+.+.+.+++....++...|.+++
T Consensus       126 ~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~  202 (350)
T 4ay9_X          126 HSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQE-IHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGAS  202 (350)
T ss_dssp             CBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCCE-ECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEE
T ss_pred             ccchhhhhhhccccccc-cccccchhhcchhhhhhccccccccC-CChhhcc-ccchhHHhhccCCcccCCCHHHhccCc
Confidence            6667888888664 454 55554566554 58889999998873 4444444 677889988764433366665788999


Q ss_pred             CCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCC
Q 045865          176 SLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYS  212 (225)
Q Consensus       176 ~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n  212 (225)
                      +|+.|++++|+|   ..+|..  . +.+|+.|.+.++
T Consensus       203 ~L~~LdLs~N~l---~~lp~~--~-~~~L~~L~~l~~  233 (350)
T 4ay9_X          203 GPVILDISRTRI---HSLPSY--G-LENLKKLRARST  233 (350)
T ss_dssp             CCSEEECTTSCC---CCCCSS--S-CTTCCEEECTTC
T ss_pred             ccchhhcCCCCc---CccChh--h-hccchHhhhccC
Confidence            999999999976   334432  2 556777766555

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.45  E-value=2.2e-13  Score=115.89  Aligned_cols=188  Identities=16%  Similarity=0.202  Sum_probs=100.3

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEEC----------------
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNL----------------   83 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l----------------   83 (225)
                      .+++.|++++|.+..   ......+..+++|++|++.+| +......   .....+++|++|++                
T Consensus       289 ~~L~~L~L~~~~l~~---~~l~~~~~~~~~L~~L~l~~~-~~~~~l~---~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~  361 (594)
T 2p1m_B          289 SRLTTLNLSYATVQS---YDLVKLLCQCPKLQRLWVLDY-IEDAGLE---VLASTCKDLRELRVFPSEPFVMEPNVALTE  361 (594)
T ss_dssp             TTCCEEECTTCCCCH---HHHHHHHTTCTTCCEEEEEGG-GHHHHHH---HHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred             CCCCEEEccCCCCCH---HHHHHHHhcCCCcCEEeCcCc-cCHHHHH---HHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence            578888888887653   223334556666666666655 2211100   01123445555544                


Q ss_pred             ------------------CCCCCChhhHHhhh-cCCCCCEEEcC--C----CCCCCccch-----hhhccCCCCceeecC
Q 045865           84 ------------------SGNSFNNSILSSLT-HLSSLRSLNLL--W----NRLEGSIDV-----KELHNFTNLEYLTLE  133 (225)
Q Consensus        84 ------------------~~~~l~~~~~~~l~-~l~~L~~L~l~--~----n~~~~~~~~-----~~~~~l~~L~~l~l~  133 (225)
                                        ..+.++......+. .+++|+.|++.  +    +.+. ..+.     ..+..+++|+.|+++
T Consensus       362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~  440 (594)
T 2p1m_B          362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLS  440 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECC
T ss_pred             HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeec
Confidence                              44444443333333 35666666666  2    2232 1110     024455667777775


Q ss_pred             CCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCc
Q 045865          134 SSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYST  213 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~  213 (225)
                      + .+.+..+..+...+++|+.|++++|.+++........++++|+.|++++|++  .+..+..+...+++|+.|++++|+
T Consensus       441 ~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~--~~~~~~~~~~~l~~L~~L~l~~~~  517 (594)
T 2p1m_B          441 G-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF--GDKALLANASKLETMRSLWMSSCS  517 (594)
T ss_dssp             S-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC--CHHHHHHTGGGGGGSSEEEEESSC
T ss_pred             C-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC--cHHHHHHHHHhCCCCCEEeeeCCC
Confidence            5 5555555555444677777777777765443331224567777777777754  333333232227777777777777


Q ss_pred             CCCcc
Q 045865          214 LGTNS  218 (225)
Q Consensus       214 l~~~~  218 (225)
                      ++...
T Consensus       518 ~~~~~  522 (594)
T 2p1m_B          518 VSFGA  522 (594)
T ss_dssp             CBHHH
T ss_pred             CCHHH
Confidence            75443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.39  E-value=2.9e-13  Score=107.27  Aligned_cols=194  Identities=15%  Similarity=0.162  Sum_probs=132.5

Q ss_pred             cCceEEeeccccccc--cc-----h---------hHHhhhhhcC--------CCCccEEEccCCcccCcchhhHHHHHhc
Q 045865           19 TGRVIALDLSYIYSG--EY-----S---------WYLNASLFTP--------FQQLESLDLTQNKIAGCVENEGIERLSR   74 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~--~~-----~---------~~~~~~~~~~--------l~~L~~L~l~~n~i~~~~~~~~~~~~~~   74 (225)
                      ..+++.|||++|++.  .+     .         ..++..+|.+        +++|++|.+.+ .+......    +|..
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~----aF~~  122 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDA----AFKG  122 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTT----TTTT
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHH----Hhhc
Confidence            357889999999887  11     0         0345667888        99999999988 77764444    6889


Q ss_pred             CCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCC-------C-------------------Cccchh---------
Q 045865           75 LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRL-------E-------------------GSIDVK---------  119 (225)
Q Consensus        75 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~-------~-------------------~~~~~~---------  119 (225)
                      +++|+.+++..+.+....+..|..+.++..+.......       .                   +.++..         
T Consensus       123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~  202 (329)
T 3sb4_A          123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPR  202 (329)
T ss_dssp             CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGG
T ss_pred             CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcc
Confidence            99999999999988766666676666666665544211       0                   000000         


Q ss_pred             -----------------h-hccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc-EE
Q 045865          120 -----------------E-LHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE-HF  180 (225)
Q Consensus       120 -----------------~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~-~l  180 (225)
                                       . ...+++|+.+++.+|.+.......+.. +.+|+.+.+..| ++ .++..+|.++.+|+ .+
T Consensus       203 ~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~-~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l  279 (329)
T 3sb4_A          203 DINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQ-KKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTL  279 (329)
T ss_dssp             GCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTT-CTTCCEEECCTT-CC-EECTTTTTTCTTCCEEE
T ss_pred             ccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhC-CCCCCEEECCcc-cc-eehHHHhhCChhccEEE
Confidence                             0 012678899999988877443445555 889999999887 55 45555899999998 99


Q ss_pred             EccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhhcc
Q 045865          181 DMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRILHQ  224 (225)
Q Consensus       181 ~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~~~  224 (225)
                      ++..+ +...+  +.++.. |++|+.+++.+|.++...+..|..
T Consensus       280 ~l~~~-l~~I~--~~aF~~-c~~L~~l~l~~n~i~~I~~~aF~~  319 (329)
T 3sb4_A          280 ELPAS-VTAIE--FGAFMG-CDNLRYVLATGDKITTLGDELFGN  319 (329)
T ss_dssp             EECTT-CCEEC--TTTTTT-CTTEEEEEECSSCCCEECTTTTCT
T ss_pred             EEccc-ceEEc--hhhhhC-CccCCEEEeCCCccCccchhhhcC
Confidence            88873 32111  345666 899999999999888777666653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.39  E-value=2.6e-12  Score=109.29  Aligned_cols=38  Identities=18%  Similarity=0.140  Sum_probs=23.1

Q ss_pred             cCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEecccc
Q 045865          123 NFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFC  160 (225)
Q Consensus       123 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n  160 (225)
                      .+++|+.|++++|.+.+.....+...+++|+.|++.+|
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            35677777777777665444333322677777777666

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.36  E-value=1.7e-12  Score=93.22  Aligned_cols=105  Identities=22%  Similarity=0.202  Sum_probs=87.8

Q ss_pred             eEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCC
Q 045865           22 VIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS  101 (225)
Q Consensus        22 v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~  101 (225)
                      .++++++++++.    .++...   .+.+++|++++|.+.+..+.    .|..+++|++|++++|.++...+..+..+++
T Consensus        11 ~~~l~~s~n~l~----~ip~~~---~~~l~~L~L~~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~   79 (170)
T 3g39_A           11 GTTVDCSGKSLA----SVPTGI---PTTTQVLYLYDNQITKLEPG----VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ   79 (170)
T ss_dssp             TTEEECTTSCCS----SCCSCC---CTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCEEEeCCCCcC----ccCccC---CCCCcEEEcCCCcCCccChh----hhcCcccCCEEECCCCCcCccChhhccCCCC
Confidence            357899999887    455433   37889999999999986666    5889999999999999999877777889999


Q ss_pred             CCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCc
Q 045865          102 LRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLH  138 (225)
Q Consensus       102 L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~  138 (225)
                      |++|++++|.+. .++...+..+++|+.|++.+|.+.
T Consensus        80 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           80 LTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCEEECCCCccC-EeCHHHhcCCCCCCEEEeCCCCCC
Confidence            999999999998 555546888999999999999875

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.33  E-value=4.4e-15  Score=109.40  Aligned_cols=140  Identities=19%  Similarity=0.244  Sum_probs=110.0

Q ss_pred             HHhcCCCCCEEECCCCCCChhhH------HhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHH
Q 045865           71 RLSRLNNLKMLNLSGNSFNNSIL------SSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQS  144 (225)
Q Consensus        71 ~~~~l~~L~~L~l~~~~l~~~~~------~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~  144 (225)
                      .+.....++.+++..+.+.+..+      ..+..+++|++|++++|.+. .++  .+..+++|+.|++++|.+. .++..
T Consensus        13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~n~l~-~l~~~   88 (198)
T 1ds9_A           13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIK-KIENL   88 (198)
T ss_dssp             HHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEEEEEC-SCSSH
T ss_pred             HHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCCCCcc-cccch
Confidence            45666677666666666655444      48899999999999999987 465  7888999999999999987 45555


Q ss_pred             HHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccch
Q 045865          145 IASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSR  220 (225)
Q Consensus       145 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~  220 (225)
                      +.. +++|+.|++++|.+++ .+  .+..+++|+.|++++|++..... ...+.. +++|+.|++++|++++.+|.
T Consensus        89 ~~~-~~~L~~L~L~~N~l~~-l~--~~~~l~~L~~L~l~~N~i~~~~~-~~~l~~-l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A           89 DAV-ADTLEELWISYNQIAS-LS--GIEKLVNLRVLYMSNNKITNWGE-IDKLAA-LDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHH-HHHCSEEEEEEEECCC-HH--HHHHHHHSSEEEESEEECCCHHH-HHHHTT-TTTCSEEEECSCHHHHHHHT
T ss_pred             hhc-CCcCCEEECcCCcCCc-CC--ccccCCCCCEEECCCCcCCchhH-HHHHhc-CCCCCEEEecCCcccccccc
Confidence            555 7899999999999985 33  47788999999999997632222 246788 99999999999999877654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.33  E-value=3.3e-12  Score=92.01  Aligned_cols=104  Identities=21%  Similarity=0.222  Sum_probs=87.3

Q ss_pred             EEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCC
Q 045865           23 IALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL  102 (225)
Q Consensus        23 ~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L  102 (225)
                      +.++++++++.    .++...   .+.|++|++++|.+.+..+.    .|..+++|++|++++|.++...+..+..+++|
T Consensus        15 ~~l~~~~n~l~----~iP~~~---~~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L   83 (174)
T 2r9u_A           15 TLVNCQNIRLA----SVPAGI---PTDKQRLWLNNNQITKLEPG----VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQL   83 (174)
T ss_dssp             SEEECCSSCCS----SCCSCC---CTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cEEEeCCCCCC----ccCCCc---CCCCcEEEeCCCCccccCHH----HhcCCcCCCEEECCCCCCCccChhHhCCcchh
Confidence            67899999887    555533   27889999999999986666    58899999999999999988666677889999


Q ss_pred             CEEEcCCCCCCCccchhhhccCCCCceeecCCCCCc
Q 045865          103 RSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLH  138 (225)
Q Consensus       103 ~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~  138 (225)
                      ++|++++|.+. .++...+..+++|+.|++.+|.+.
T Consensus        84 ~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           84 TQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             hEEECCCCccc-eeCHHHhccccCCCEEEeCCCCcc
Confidence            99999999998 566546888999999999999875

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.30  E-value=3.9e-12  Score=91.32  Aligned_cols=121  Identities=20%  Similarity=0.293  Sum_probs=89.9

Q ss_pred             CCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEe
Q 045865           77 NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLS  156 (225)
Q Consensus        77 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~  156 (225)
                      ..+.++++++.++. +|..+  ...+++|++++|.+. .++...+..+++|+.|++++|.+....+..+.. +++|+.|+
T Consensus        10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~-l~~L~~L~   84 (170)
T 3g39_A           10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK-LTQLTQLS   84 (170)
T ss_dssp             ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT-CTTCCEEE
T ss_pred             CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccC-CCCCCEEE
Confidence            46789999998876 44433  378999999999998 444337888999999999999988544444556 89999999


Q ss_pred             ccccccccccccCCCCCCCCCcEEEccCCccccc----hhHHHHHhhcCCCC
Q 045865          157 MSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALN----TSFLQIIGESMPSL  204 (225)
Q Consensus       157 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~----~~~~~~l~~~~~~L  204 (225)
                      +++|.+++..+. .|.++++|+.|++++|++...    ..+..++.. .+.+
T Consensus        85 L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~-~~~~  134 (170)
T 3g39_A           85 LNDNQLKSIPRG-AFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQ-HPGL  134 (170)
T ss_dssp             CCSSCCCCCCTT-TTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHH-CGGG
T ss_pred             CCCCccCEeCHH-HhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHh-Ccce
Confidence            999999854444 788999999999999966432    234455555 4433

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.26  E-value=7.9e-12  Score=90.05  Aligned_cols=106  Identities=15%  Similarity=0.220  Sum_probs=82.5

Q ss_pred             CCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEe
Q 045865           77 NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLS  156 (225)
Q Consensus        77 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~  156 (225)
                      .-+.++++++.+.. +|..+.  +.|++|++++|.+. .+++..+..+++|+.|++++|.+.+..+..+.. +++|+.|+
T Consensus        13 ~~~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~-l~~L~~L~   87 (174)
T 2r9u_A           13 DQTLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK-LTQLTQLD   87 (174)
T ss_dssp             CSSEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEE
T ss_pred             CCcEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCC-cchhhEEE
Confidence            34788999998865 444332  78999999999998 444347888999999999999987543334455 89999999


Q ss_pred             ccccccccccccCCCCCCCCCcEEEccCCccc
Q 045865          157 MSFCEVNGVVRGQGFPHFKSLEHFDMRFARIA  188 (225)
Q Consensus       157 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~  188 (225)
                      +++|.++. ++...+..+++|+.|++++|++.
T Consensus        88 L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           88 LNDNHLKS-IPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCSSCCCC-CCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CCCCccce-eCHHHhccccCCCEEEeCCCCcc
Confidence            99999984 44436889999999999999764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.25  E-value=1.8e-11  Score=97.00  Aligned_cols=188  Identities=16%  Similarity=0.151  Sum_probs=130.2

Q ss_pred             CceEEeeccccccccchhHHhhhhhcC-CCCccEEEccCCcccC-------------------cchhhHHHHHhc-----
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTP-FQQLESLDLTQNKIAG-------------------CVENEGIERLSR-----   74 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~n~i~~-------------------~~~~~~~~~~~~-----   74 (225)
                      .++++|.++++--.     .....+.. +++|++|++++|.+..                   .++..   .|..     
T Consensus        25 ~~l~~L~l~g~i~~-----~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~---aF~~~~~~~   96 (329)
T 3sb4_A           25 NSITHLTLTGKLNA-----EDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAY---AFSNVVNGV   96 (329)
T ss_dssp             HHCSEEEEEEEECH-----HHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTT---TTEEEETTE
T ss_pred             CceeEEEEeccccH-----HHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHH---Hhccccccc
Confidence            35778888875321     11222333 8889999999998871                   12222   4677     


Q ss_pred             ---CCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCC---------------
Q 045865           75 ---LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSS---------------  136 (225)
Q Consensus        75 ---l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~---------------  136 (225)
                         +++|+++++.. .+.......|..+.+|+.+++..|.+. .++...|..+.++..+......               
T Consensus        97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~  174 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE  174 (329)
T ss_dssp             EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred             ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence               99999999999 888877888999999999999999876 5555466665555555443310               


Q ss_pred             --------------------------------------CcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc
Q 045865          137 --------------------------------------LHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE  178 (225)
Q Consensus       137 --------------------------------------~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  178 (225)
                                                            +.......+...+++|+.+++++|.++ .++...|.++.+|+
T Consensus       175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~  253 (329)
T 3sb4_A          175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLL  253 (329)
T ss_dssp             SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCC
T ss_pred             ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCC
Confidence                                                  111111222223899999999999988 66666999999999


Q ss_pred             EEEccCCccccchhHHHHHhhcCCCCc-EEEccCCcCCCccchhhc
Q 045865          179 HFDMRFARIALNTSFLQIIGESMPSLK-YLLLSYSTLGTNSSRILH  223 (225)
Q Consensus       179 ~l~l~~n~i~~~~~~~~~l~~~~~~L~-~L~l~~n~l~~~~~~~~~  223 (225)
                      .+++..| +...  -..++.. +++|+ .+++.+ .++...+..|.
T Consensus       254 ~l~l~~n-i~~I--~~~aF~~-~~~L~~~l~l~~-~l~~I~~~aF~  294 (329)
T 3sb4_A          254 KIKLPHN-LKTI--GQRVFSN-CGRLAGTLELPA-SVTAIEFGAFM  294 (329)
T ss_dssp             EEECCTT-CCEE--CTTTTTT-CTTCCEEEEECT-TCCEECTTTTT
T ss_pred             EEECCcc-ccee--hHHHhhC-ChhccEEEEEcc-cceEEchhhhh
Confidence            9999998 4221  1345666 99999 999998 77766666654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.13  E-value=1.6e-10  Score=92.08  Aligned_cols=102  Identities=22%  Similarity=0.269  Sum_probs=84.3

Q ss_pred             eecccc-ccccchhHHhhhhhcCCCCccEEEccC-CcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCC
Q 045865           25 LDLSYI-YSGEYSWYLNASLFTPFQQLESLDLTQ-NKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL  102 (225)
Q Consensus        25 l~l~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L  102 (225)
                      ++.+++ ++.    .++.  +..+++|++|+|++ |.+....+.    .|..+++|+.|+|++|.+++..+..|..+++|
T Consensus        13 v~~~~~n~l~----~ip~--l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L   82 (347)
T 2ifg_A           13 LRCTRDGALD----SLHH--LPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL   82 (347)
T ss_dssp             EECCSSCCCT----TTTT--SCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEECTTGGGSCSCC
T ss_pred             EEcCCCCCCC----ccCC--CCCCCCeeEEEccCCCCCCCcChh----HhccccCCCEEECCCCccceeCHHHhcCCcCC
Confidence            455555 665    5555  88899999999996 999885555    68899999999999999999888899999999


Q ss_pred             CEEEcCCCCCCCccchhhhccCCCCceeecCCCCCc
Q 045865          103 RSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLH  138 (225)
Q Consensus       103 ~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~  138 (225)
                      +.|++++|.+. .++...+..+. |+.|++.+|.+.
T Consensus        83 ~~L~l~~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           83 SRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CEEECCSSCCS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CEEeCCCCccc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence            99999999998 56654555555 999999999876

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.10  E-value=1.4e-09  Score=78.93  Aligned_cols=102  Identities=24%  Similarity=0.190  Sum_probs=57.6

Q ss_pred             HHhhhhhcCCCCccEEEccCC-cccCcchhhHHHHHhcCCCCCEEECCCCCCChhh----HHhhhcCCCCCEEEcCCCCC
Q 045865           38 YLNASLFTPFQQLESLDLTQN-KIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSI----LSSLTHLSSLRSLNLLWNRL  112 (225)
Q Consensus        38 ~~~~~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~----~~~l~~l~~L~~L~l~~n~~  112 (225)
                      +..+..+...+.|++|++++| .+...........+...++|++|++++|.+....    ...+...+.|++|++++|.+
T Consensus        26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence            445556667777777777777 6665444434445566677777777777775432    33344445666666666665


Q ss_pred             CCccc---hhhhccCCCCceeec--CCCCCcH
Q 045865          113 EGSID---VKELHNFTNLEYLTL--ESSSLHI  139 (225)
Q Consensus       113 ~~~~~---~~~~~~l~~L~~l~l--~~~~~~~  139 (225)
                      .+.-.   ...+...++|+.|++  ++|.+.+
T Consensus       106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A          106 SGSGILALVEALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             CHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence            52210   113334445566666  5555553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.06  E-value=7.3e-10  Score=80.48  Aligned_cols=121  Identities=17%  Similarity=0.125  Sum_probs=95.3

Q ss_pred             cCceEEeecccc-ccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChh----hH
Q 045865           19 TGRVIALDLSYI-YSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNS----IL   93 (225)
Q Consensus        19 ~~~v~~l~l~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~----~~   93 (225)
                      ...+++|++++| .+...+.......+...+.|++|++++|.+.........+.+...++|++|++++|.+...    +.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            468999999999 9987666777778888999999999999998655555555677889999999999999864    35


Q ss_pred             HhhhcCCCCCEEEc--CCCCCCCccch---hhhccCCCCceeecCCCCCcH
Q 045865           94 SSLTHLSSLRSLNL--LWNRLEGSIDV---KELHNFTNLEYLTLESSSLHI  139 (225)
Q Consensus        94 ~~l~~l~~L~~L~l--~~n~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~  139 (225)
                      ..+...+.|++|++  ++|.+.+....   ..+...++|+.|++++|.+..
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence            56667789999999  88988733211   244556788888888888753

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.00  E-value=4.7e-10  Score=91.16  Aligned_cols=180  Identities=11%  Similarity=0.125  Sum_probs=100.6

Q ss_pred             ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCC
Q 045865           21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS  100 (225)
Q Consensus        21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~  100 (225)
                      .++++.+.. .+.    .+...+|.++++|+.+++..|.+......    .|. +.+|+.+.+..+ +.......|..+.
T Consensus       158 ~L~~i~lp~-~l~----~I~~~aF~~c~~L~~l~l~~n~l~~I~~~----aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~  226 (401)
T 4fdw_A          158 TVQEIVFPS-TLE----QLKEDIFYYCYNLKKADLSKTKITKLPAS----TFV-YAGIEEVLLPVT-LKEIGSQAFLKTS  226 (401)
T ss_dssp             CCCEEECCT-TCC----EECSSTTTTCTTCCEEECTTSCCSEECTT----TTT-TCCCSEEECCTT-CCEECTTTTTTCT
T ss_pred             CceEEEeCC-Ccc----EehHHHhhCcccCCeeecCCCcceEechh----hEe-ecccCEEEeCCc-hheehhhHhhCCC
Confidence            355566654 333    55556677777777777776665543222    233 355555555532 4333344444555


Q ss_pred             CCCEEEcCCC---------------------CCCCccchhhhccCCCCceeecCCCCCc-----HHHHHHHHhhCCCCCE
Q 045865          101 SLRSLNLLWN---------------------RLEGSIDVKELHNFTNLEYLTLESSSLH-----ISLLQSIASIFPSLKN  154 (225)
Q Consensus       101 ~L~~L~l~~n---------------------~~~~~~~~~~~~~l~~L~~l~l~~~~~~-----~~~~~~~~~~~~~L~~  154 (225)
                      +|+.+.+..+                     .+. .++...|..+.+|+.+.+.++.+.     ......+.. |++|+.
T Consensus       227 ~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~-c~~L~~  304 (401)
T 4fdw_A          227 QLKTIEIPENVSTIGQEAFRESGITTVKLPNGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG-CPKLAR  304 (401)
T ss_dssp             TCCCEECCTTCCEECTTTTTTCCCSEEEEETTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT-CTTCCE
T ss_pred             CCCEEecCCCccCccccccccCCccEEEeCCCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC-CccCCe
Confidence            5555554432                     122 344446666777777777665432     112234444 777777


Q ss_pred             EeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccch
Q 045865          155 LSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSR  220 (225)
Q Consensus       155 L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~  220 (225)
                      +.+.. .++ .+....|.+|.+|+.+.+..+ +..  --..++.. + +|+.+++.+|.+....+.
T Consensus       305 l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~--I~~~aF~~-~-~L~~l~l~~n~~~~l~~~  363 (401)
T 4fdw_A          305 FEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQ--INFSAFNN-T-GIKEVKVEGTTPPQVFEK  363 (401)
T ss_dssp             ECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCE--ECTTSSSS-S-CCCEEEECCSSCCBCCCS
T ss_pred             EEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccE--EcHHhCCC-C-CCCEEEEcCCCCcccccc
Confidence            77773 354 344447778888888888655 211  11234555 7 888888888877654443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.00  E-value=6.9e-10  Score=88.35  Aligned_cols=88  Identities=18%  Similarity=0.290  Sum_probs=40.0

Q ss_pred             hhcCCCCCEEEcCC-CCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCC
Q 045865           96 LTHLSSLRSLNLLW-NRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHF  174 (225)
Q Consensus        96 l~~l~~L~~L~l~~-n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  174 (225)
                      +..+.+|+.|++++ |.+. .++...+..+.+|+.|+|++|.+.+..+..+.. +++|+.|+|++|.+++ ++...+..+
T Consensus        27 l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-l~~L~~L~l~~N~l~~-~~~~~~~~~  103 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF-TPRLSRLNLSFNALES-LSWKTVQGL  103 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGS-CSCCCEEECCSSCCSC-CCSTTTCSC
T ss_pred             CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcC-CcCCCEEeCCCCccce-eCHHHcccC
Confidence            44444444455443 4443 333224444445555555555444333333343 5555555555555542 222133333


Q ss_pred             CCCcEEEccCCcc
Q 045865          175 KSLEHFDMRFARI  187 (225)
Q Consensus       175 ~~L~~l~l~~n~i  187 (225)
                      . |+.|++.+|++
T Consensus       104 ~-L~~l~l~~N~~  115 (347)
T 2ifg_A          104 S-LQELVLSGNPL  115 (347)
T ss_dssp             C-CCEEECCSSCC
T ss_pred             C-ceEEEeeCCCc
Confidence            3 55555555544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.98  E-value=2.9e-09  Score=85.27  Aligned_cols=193  Identities=19%  Similarity=0.207  Sum_probs=98.0

Q ss_pred             CceEEeeccccccc-cchhHHh---hhhhcCCCCccEEEccCCccc---------CcchhhHHHHHhcCCCCCEEECCCC
Q 045865           20 GRVIALDLSYIYSG-EYSWYLN---ASLFTPFQQLESLDLTQNKIA---------GCVENEGIERLSRLNNLKMLNLSGN   86 (225)
Q Consensus        20 ~~v~~l~l~~~~~~-~~~~~~~---~~~~~~l~~L~~L~l~~n~i~---------~~~~~~~~~~~~~l~~L~~L~l~~~   86 (225)
                      .+|+.|.+....+. ...+...   .....++++|+.|.+.+....         .....    .+..+|+|+.|.+.++
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~----ll~~~P~L~~L~L~g~  182 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSP----VLDAMPLLNNLKIKGT  182 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHH----HHHTCTTCCEEEEECC
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHH----HHhcCCCCcEEEEeCC
Confidence            35666666644433 1111221   222445667777776543221         01122    4566778888887766


Q ss_pred             CCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhc--cCCCCceeecCC--CC------CcHHHHHHHH-hhCCCCCEE
Q 045865           87 SFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELH--NFTNLEYLTLES--SS------LHISLLQSIA-SIFPSLKNL  155 (225)
Q Consensus        87 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~--~l~~L~~l~l~~--~~------~~~~~~~~~~-~~~~~L~~L  155 (225)
                      .-.. ++. + .+++|++|++..+.+...... .+.  .+++|+.|+|+.  +.      +.. +...+. ..+++|+.|
T Consensus       183 ~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~-~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~-l~~~l~~~~~p~Lr~L  257 (362)
T 2ra8_A          183 NNLS-IGK-K-PRPNLKSLEIISGGLPDSVVE-DILGSDLPNLEKLVLYVGVEDYGFDGDMNV-FRPLFSKDRFPNLKWL  257 (362)
T ss_dssp             BTCB-CCS-C-BCTTCSEEEEECSBCCHHHHH-HHHHSBCTTCCEEEEECBCGGGTCCSCGGG-TGGGSCTTTCTTCCEE
T ss_pred             CCce-ecc-c-cCCCCcEEEEecCCCChHHHH-HHHHccCCCCcEEEEeccccccccchhHHH-HHHHHhcCCCCCcCEE
Confidence            2111 111 2 367777777777766422211 332  567777777642  11      100 011111 116777888


Q ss_pred             ecccccccccccc--CCCCCCCCCcEEEccCCccccch--hHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865          156 SMSFCEVNGVVRG--QGFPHFKSLEHFDMRFARIALNT--SFLQIIGESMPSLKYLLLSYSTLGTNSSRIL  222 (225)
Q Consensus       156 ~l~~n~~~~~~~~--~~~~~~~~L~~l~l~~n~i~~~~--~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~  222 (225)
                      .+.+|.+.+....  .....+++|++|+++.|.+...+  .++..+.. +++|+.|+++.|.+++...+.+
T Consensus       258 ~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~-l~~L~~L~L~~n~i~d~~~~~l  327 (362)
T 2ra8_A          258 GIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDK-IKHLKFINMKYNYLSDEMKKEL  327 (362)
T ss_dssp             EEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHH-HTTCSEEECCSBBCCHHHHHHH
T ss_pred             eCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhccc-CCcceEEECCCCcCCHHHHHHH
Confidence            7777776532221  01134667788888777443221  12333344 6778888888777776554444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.96  E-value=9e-09  Score=82.41  Aligned_cols=169  Identities=19%  Similarity=0.220  Sum_probs=110.7

Q ss_pred             CCccEEEccCCcccC-cc---hhhHHHHHhcCCCCCEEECCCCCCC---------hhhHHhhhcCCCCCEEEcCCCCCCC
Q 045865           48 QQLESLDLTQNKIAG-CV---ENEGIERLSRLNNLKMLNLSGNSFN---------NSILSSLTHLSSLRSLNLLWNRLEG  114 (225)
Q Consensus        48 ~~L~~L~l~~n~i~~-~~---~~~~~~~~~~l~~L~~L~l~~~~l~---------~~~~~~l~~l~~L~~L~l~~n~~~~  114 (225)
                      ..++.|.+..+.+.+ ..   -....+.+..+++|+.|.+......         ..+...+..+|+|+.|++.++.-. 
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence            456788887555431 11   1111223557899999999765331         124566778899999999887322 


Q ss_pred             ccchhhhccCCCCceeecCCCCCcHHHHHHHHh-hCCCCCEEeccc--cccccc-----cccCCC--CCCCCCcEEEccC
Q 045865          115 SIDVKELHNFTNLEYLTLESSSLHISLLQSIAS-IFPSLKNLSMSF--CEVNGV-----VRGQGF--PHFKSLEHFDMRF  184 (225)
Q Consensus       115 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~--n~~~~~-----~~~~~~--~~~~~L~~l~l~~  184 (225)
                      .++  .+ .+++|+.|++..+.+.......+.. .+|+|+.|+++.  +...+.     +.. .+  ..+++|+.|+++.
T Consensus       186 ~l~--~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~L~~  261 (362)
T 2ra8_A          186 SIG--KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLGIVD  261 (362)
T ss_dssp             BCC--SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEEEES
T ss_pred             eec--cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEeCCC
Confidence            233  23 3789999999999988766666652 289999999863  221111     111 22  3588999999999


Q ss_pred             CccccchhHHHHHhh--cCCCCcEEEccCCcCCCccchhhc
Q 045865          185 ARIALNTSFLQIIGE--SMPSLKYLLLSYSTLGTNSSRILH  223 (225)
Q Consensus       185 n~i~~~~~~~~~l~~--~~~~L~~L~l~~n~l~~~~~~~~~  223 (225)
                      |.+  .+..+..+..  .+++|+.|+|+.|.+++..+..+.
T Consensus       262 ~~i--~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~  300 (362)
T 2ra8_A          262 AEE--QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL  300 (362)
T ss_dssp             CTT--HHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHH
T ss_pred             CCC--chHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHH
Confidence            954  3444444542  378999999999999986655443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.93  E-value=1.5e-09  Score=88.26  Aligned_cols=101  Identities=13%  Similarity=0.140  Sum_probs=77.2

Q ss_pred             ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCC
Q 045865           21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS  100 (225)
Q Consensus        21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~  100 (225)
                      .++.+.+..+ +.    .+...+|.++ .|+.+.+.. .+......    .|..+++|+.+++..+.++......|. ..
T Consensus       136 ~L~~i~l~~~-i~----~I~~~aF~~~-~L~~i~lp~-~l~~I~~~----aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~  203 (401)
T 4fdw_A          136 QIAKVVLNEG-LK----SIGDMAFFNS-TVQEIVFPS-TLEQLKED----IFYYCYNLKKADLSKTKITKLPASTFV-YA  203 (401)
T ss_dssp             CCSEEECCTT-CC----EECTTTTTTC-CCCEEECCT-TCCEECSS----TTTTCTTCCEEECTTSCCSEECTTTTT-TC
T ss_pred             CccEEEeCCC-cc----EECHHhcCCC-CceEEEeCC-CccEehHH----HhhCcccCCeeecCCCcceEechhhEe-ec
Confidence            4677777665 43    6677788874 699999986 56554444    689999999999999999876666665 68


Q ss_pred             CCCEEEcCCCCCCCccchhhhccCCCCceeecCCC
Q 045865          101 SLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESS  135 (225)
Q Consensus       101 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~  135 (225)
                      +|+.+.+..+ +. .++...|..+.+|+.+.+..+
T Consensus       204 ~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~  236 (401)
T 4fdw_A          204 GIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN  236 (401)
T ss_dssp             CCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT
T ss_pred             ccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC
Confidence            9999999865 44 666668888888988888764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.65  E-value=2.4e-08  Score=76.37  Aligned_cols=82  Identities=28%  Similarity=0.368  Sum_probs=57.1

Q ss_pred             hcCCCCCEEECCCCCCCh--hhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHH-------HH
Q 045865           73 SRLNNLKMLNLSGNSFNN--SILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISL-------LQ  143 (225)
Q Consensus        73 ~~l~~L~~L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-------~~  143 (225)
                      ..+++|+.|+|++|.+++  .++..+..+++|+.|++++|.+.+......+..+ +|+.|++.+|.+.+..       ..
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            468889999999998876  3445667888999999999988733122233333 8888899888876421       12


Q ss_pred             HHHhhCCCCCEEe
Q 045865          144 SIASIFPSLKNLS  156 (225)
Q Consensus       144 ~~~~~~~~L~~L~  156 (225)
                      .+.. +++|+.|+
T Consensus       246 il~~-~P~L~~LD  257 (267)
T 3rw6_A          246 IRER-FPKLLRLD  257 (267)
T ss_dssp             HHHH-CTTCCEES
T ss_pred             HHHH-CcccCeEC
Confidence            3444 88888875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.60  E-value=6.9e-08  Score=68.92  Aligned_cols=102  Identities=16%  Similarity=0.254  Sum_probs=54.2

Q ss_pred             CCCEEEcCCCCCCCccchhhhccCCCCceeecCCCC-CcHHHHHHHHhhC----CCCCEEeccccc-cccccccCCCCCC
Q 045865          101 SLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSS-LHISLLQSIASIF----PSLKNLSMSFCE-VNGVVRGQGFPHF  174 (225)
Q Consensus       101 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~~----~~L~~L~l~~n~-~~~~~~~~~~~~~  174 (225)
                      .|+.|+++++.++ ......+..+++|+.|+|++|. +++.....+.. +    ++|++|++++|. +++.... .+.++
T Consensus        62 ~L~~LDLs~~~It-d~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~-~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~  138 (176)
T 3e4g_A           62 KIQAIDATDSCIM-SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQ-LENLQKSMLEMEIISCGNVTDKGII-ALHHF  138 (176)
T ss_dssp             CEEEEEEESCCCC-GGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHT-CHHHHHHCCEEEEESCTTCCHHHHH-HGGGC
T ss_pred             eEeEEeCcCCCcc-HHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHh-cccccCCCCEEEcCCCCcCCHHHHH-HHhcC
Confidence            4555555555544 2222244556666666666653 55555555544 2    357777777764 5543333 45566


Q ss_pred             CCCcEEEccCCc-cccchhHHHHHhhcCCCCc
Q 045865          175 KSLEHFDMRFAR-IALNTSFLQIIGESMPSLK  205 (225)
Q Consensus       175 ~~L~~l~l~~n~-i~~~~~~~~~l~~~~~~L~  205 (225)
                      ++|+.|++++|. +...+.....+.+.+|+++
T Consensus       139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~  170 (176)
T 3e4g_A          139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE  170 (176)
T ss_dssp             TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred             CCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence            777777777763 3222223333444366654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.45  E-value=2.2e-07  Score=66.36  Aligned_cols=83  Identities=20%  Similarity=0.360  Sum_probs=42.8

Q ss_pred             CccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCC-CChhhHHhhhcC----CCCCEEEcCCCC-CCCccchhhhc
Q 045865           49 QLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNS-FNNSILSSLTHL----SSLRSLNLLWNR-LEGSIDVKELH  122 (225)
Q Consensus        49 ~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l----~~L~~L~l~~n~-~~~~~~~~~~~  122 (225)
                      .|+.|+++++.+....-.    .+..+++|++|+|++|. +++.....+..+    ++|++|++++|. ++ ......+.
T Consensus        62 ~L~~LDLs~~~Itd~GL~----~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT-D~Gl~~L~  136 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFD----HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT-DKGIIALH  136 (176)
T ss_dssp             CEEEEEEESCCCCGGGGG----GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC-HHHHHHGG
T ss_pred             eEeEEeCcCCCccHHHHH----HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC-HHHHHHHh
Confidence            466666666655443222    35566666666666653 555444444443    245666665553 33 22222444


Q ss_pred             cCCCCceeecCCCC
Q 045865          123 NFTNLEYLTLESSS  136 (225)
Q Consensus       123 ~l~~L~~l~l~~~~  136 (225)
                      .+++|+.|++.++.
T Consensus       137 ~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          137 HFRNLKYLFLSDLP  150 (176)
T ss_dssp             GCTTCCEEEEESCT
T ss_pred             cCCCCCEEECCCCC
Confidence            55555555555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.38  E-value=6.1e-06  Score=59.93  Aligned_cols=76  Identities=17%  Similarity=0.164  Sum_probs=45.5

Q ss_pred             HHhhhhhcCCCCccEEEccCC-cccCcchhhHHHHHhcCCCCCEEECCCCCCChhh----HHhhhcCCCCCEEEcCCCCC
Q 045865           38 YLNASLFTPFQQLESLDLTQN-KIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSI----LSSLTHLSSLRSLNLLWNRL  112 (225)
Q Consensus        38 ~~~~~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~----~~~l~~l~~L~~L~l~~n~~  112 (225)
                      ......+.+-+.|++|+++++ .|.......+++.+..-++|+.|+|++|.+....    ...+..-..|++|++++|.+
T Consensus        31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I  110 (197)
T 1pgv_A           31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL  110 (197)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence            344455566677777777764 6654444444556666677777777777775432    33333445566666666665


Q ss_pred             C
Q 045865          113 E  113 (225)
Q Consensus       113 ~  113 (225)
                      .
T Consensus       111 g  111 (197)
T 1pgv_A          111 T  111 (197)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.35  E-value=2.7e-06  Score=61.85  Aligned_cols=118  Identities=13%  Similarity=0.113  Sum_probs=86.0

Q ss_pred             cCceEEeecccc-ccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhH----
Q 045865           19 TGRVIALDLSYI-YSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSIL----   93 (225)
Q Consensus        19 ~~~v~~l~l~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~----   93 (225)
                      ...+++|+|+++ ++...+.+..+..+..-+.|+.|+|++|.|.......+.+.+..-+.|++|+|+.|.|.....    
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            467899999985 888766677788888899999999999999876666666778889999999999999986433    


Q ss_pred             HhhhcCCCCCEEEcCCCCC---CCc----cchhhhccCCCCceeecCCCCC
Q 045865           94 SSLTHLSSLRSLNLLWNRL---EGS----IDVKELHNFTNLEYLTLESSSL  137 (225)
Q Consensus        94 ~~l~~l~~L~~L~l~~n~~---~~~----~~~~~~~~l~~L~~l~l~~~~~  137 (225)
                      ..+..-..|+.|++.++..   ...    +. +.+..-++|+.|++..+.+
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia-~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMM-MAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHH-HHHHHCSSCCEEECCCCCH
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHH-HHHHhCCCcCeEeccCCCc
Confidence            3444556788888875532   211    11 1344445677777765543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.30  E-value=1.9e-06  Score=65.84  Aligned_cols=83  Identities=29%  Similarity=0.329  Sum_probs=63.0

Q ss_pred             cCCCCccEEEccCCcccCc--chhhHHHHHhcCCCCCEEECCCCCCChh-hHHhhhcCCCCCEEEcCCCCCCCccch---
Q 045865           45 TPFQQLESLDLTQNKIAGC--VENEGIERLSRLNNLKMLNLSGNSFNNS-ILSSLTHLSSLRSLNLLWNRLEGSIDV---  118 (225)
Q Consensus        45 ~~l~~L~~L~l~~n~i~~~--~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~---  118 (225)
                      .++++|++|++++|.+...  ++.    .+..+++|+.|+|++|.+.+. ....+..+ +|+.|++.+|.+.+..+.   
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~----~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~  241 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSS----IVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQST  241 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTT----HHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchh----HHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchh
Confidence            5689999999999999873  234    467899999999999999864 22333344 999999999998754431   


Q ss_pred             ---hhhccCCCCceeec
Q 045865          119 ---KELHNFTNLEYLTL  132 (225)
Q Consensus       119 ---~~~~~l~~L~~l~l  132 (225)
                         ..+..+++|+.|+-
T Consensus       242 y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          242 YISAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHHHHCTTCCEESS
T ss_pred             HHHHHHHHCcccCeECC
Confidence               24667888888764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.77  E-value=3.7e-05  Score=62.09  Aligned_cols=85  Identities=18%  Similarity=0.208  Sum_probs=40.3

Q ss_pred             hhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCC
Q 045865           95 SLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHF  174 (225)
Q Consensus        95 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  174 (225)
                      .+..+.+|+.+.+..+ +. .++..++..+.+|+.+.+..+ +......++.. |.+|+.+.+..+ ++ .+...+|.+|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~-c~~L~~i~lp~~-l~-~I~~~aF~~C  365 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRG-CTSLSNINFPLS-LR-KIGANAFQGC  365 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTT-CTTCCEECCCTT-CC-EECTTTBTTC
T ss_pred             cccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccC-CCCCCEEEECcc-cc-EehHHHhhCC
Confidence            3444555555555443 22 333335555555665555432 22111233333 556666655544 33 2333355566


Q ss_pred             CCCcEEEccCC
Q 045865          175 KSLEHFDMRFA  185 (225)
Q Consensus       175 ~~L~~l~l~~n  185 (225)
                      .+|+.+.+..+
T Consensus       366 ~~L~~i~lp~~  376 (394)
T 4fs7_A          366 INLKKVELPKR  376 (394)
T ss_dssp             TTCCEEEEEGG
T ss_pred             CCCCEEEECCC
Confidence            66666655443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.60  E-value=0.00011  Score=59.37  Aligned_cols=131  Identities=10%  Similarity=0.163  Sum_probs=76.3

Q ss_pred             HHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCC
Q 045865           71 RLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFP  150 (225)
Q Consensus        71 ~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~  150 (225)
                      +|..+..|+.+.+.... .......|..+..|+.+.+... +. .++...|..+.+|+.+.+..+ +......++.. |.
T Consensus       260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~-C~  334 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSSR-IT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAG-CE  334 (394)
T ss_dssp             TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CT
T ss_pred             eeeecccccEEeccccc-ceecCcccccccccccccCCCc-cc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhC-CC
Confidence            46667777777776543 2334456667778888887643 33 555557777888888888654 33222344555 78


Q ss_pred             CCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcC
Q 045865          151 SLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTL  214 (225)
Q Consensus       151 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l  214 (225)
                      +|+.+.+..+ ++ .+...+|.+|.+|+.+++.++..     ....+.. +..|+.+.+..+.+
T Consensus       335 ~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~-----~~~~~~~-~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          335 QLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRS-----QWNAIST-DSGLQNLPVAPGSI  390 (394)
T ss_dssp             TCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHH-----HHHTCBC-CCCC----------
T ss_pred             CCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCcee-----ehhhhhc-cCCCCEEEeCCCCE
Confidence            8888888654 44 33444788888888888887732     1234555 77788877766544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.53  E-value=9.1e-05  Score=59.77  Aligned_cols=102  Identities=16%  Similarity=0.148  Sum_probs=74.8

Q ss_pred             HHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCC
Q 045865           71 RLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFP  150 (225)
Q Consensus        71 ~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~  150 (225)
                      .+..+.+|+.+.+..+ +.......|..+.+|+.+++..+ +. .++..+|..+.+|+.+.+..+ +......++.. |.
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~-C~  366 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG-CI  366 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTT-CT
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhC-CC
Confidence            4677888888888754 55555677889999999999765 44 666668999999999999766 44233345666 99


Q ss_pred             CCCEEeccccccccccccCCCCCCCCCcEE
Q 045865          151 SLKNLSMSFCEVNGVVRGQGFPHFKSLEHF  180 (225)
Q Consensus       151 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l  180 (225)
                      +|+.+.+..+- + .... .|.++++|+.+
T Consensus       367 ~L~~i~lp~~~-~-~~~~-~F~~c~~L~~I  393 (394)
T 4fs7_A          367 NLKKVELPKRL-E-QYRY-DFEDTTKFKWI  393 (394)
T ss_dssp             TCCEEEEEGGG-G-GGGG-GBCTTCEEEEE
T ss_pred             CCCEEEECCCC-E-Ehhh-eecCCCCCcEE
Confidence            99999997653 2 2233 68888888764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.51  E-value=0.00014  Score=58.63  Aligned_cols=135  Identities=13%  Similarity=0.138  Sum_probs=92.8

Q ss_pred             HHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccc
Q 045865           38 YLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSID  117 (225)
Q Consensus        38 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  117 (225)
                      .+...+|..++.|+.+.+.++-. .....    .|..+..|+.+.+.. .+.......|..+.+|+.+.+..+ +. .+.
T Consensus       255 ~i~~~aF~~c~~L~~i~lp~~~~-~I~~~----aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~  326 (394)
T 4gt6_A          255 RIETHAFDSCAYLASVKMPDSVV-SIGTG----AFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QIL  326 (394)
T ss_dssp             EECTTTTTTCSSCCEEECCTTCC-EECTT----TTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EEC
T ss_pred             EcccceeeecccccEEecccccc-eecCc----ccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-Eeh
Confidence            44556788999999999876543 22333    588899999999974 466556678889999999999876 43 566


Q ss_pred             hhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCc
Q 045865          118 VKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFAR  186 (225)
Q Consensus       118 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~  186 (225)
                      ..+|..+.+|+.+.+..+ +......++.. |.+|+.+.+.++....   . .+..+.+|+.+.+..+.
T Consensus       327 ~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~-C~~L~~i~~~~~~~~~---~-~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          327 DDAFAGCEQLERIAIPSS-VTKIPESAFSN-CTALNNIEYSGSRSQW---N-AISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             TTTTTTCTTCCEEEECTT-CCBCCGGGGTT-CTTCCEEEESSCHHHH---H-TCBCCCCC---------
T ss_pred             HhHhhCCCCCCEEEECcc-cCEEhHhHhhC-CCCCCEEEECCceeeh---h-hhhccCCCCEEEeCCCC
Confidence            668999999999999654 33223355666 9999999998876431   2 56778888888877663

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.45  E-value=0.00018  Score=57.66  Aligned_cols=135  Identities=13%  Similarity=0.184  Sum_probs=81.9

Q ss_pred             hhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchh
Q 045865           40 NASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVK  119 (225)
Q Consensus        40 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  119 (225)
                      ....+..+..++.+.+..+ +......    .+..+..|+.+.+..+ ++......+..+..|+.+.+..+ +. .++..
T Consensus       209 ~~~~f~~~~~l~~i~~~~~-~~~i~~~----~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~  280 (379)
T 4h09_A          209 TAYGFSYGKNLKKITITSG-VTTLGDG----AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYL  280 (379)
T ss_dssp             CTTTTTTCSSCSEEECCTT-CCEECTT----TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTT
T ss_pred             eecccccccccceeeeccc-eeEEccc----cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccc
Confidence            3445566677777776543 2222222    4666777777777654 44444556666777777777654 32 44444


Q ss_pred             hhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCC
Q 045865          120 ELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFA  185 (225)
Q Consensus       120 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n  185 (225)
                      .+..+.+|+.+.+..+.+.......+.. |.+|+.+.+..+ ++ .+...+|.+|.+|+.+.+..+
T Consensus       281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~-c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          281 LCSGCSNLTKVVMDNSAIETLEPRVFMD-CVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TTTTCTTCCEEEECCTTCCEECTTTTTT-CTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT
T ss_pred             ccccccccccccccccccceehhhhhcC-CCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc
Confidence            6777777777777766554333344555 777888877654 43 334447777777777777544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.37  E-value=0.00034  Score=55.97  Aligned_cols=154  Identities=13%  Similarity=0.117  Sum_probs=100.8

Q ss_pred             hcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhcc
Q 045865           44 FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHN  123 (225)
Q Consensus        44 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  123 (225)
                      +.....+..+.+..... .....    .+..+..|+.+.+..+ +.......+..+..|+.+.+..+ +. .+....+..
T Consensus       190 ~~~~~~~~~~~~~~~~~-~i~~~----~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~  261 (379)
T 4h09_A          190 YPAAKTGTEFTIPSTVK-TVTAY----GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQN  261 (379)
T ss_dssp             CCTTCCCSEEECCTTCC-EECTT----TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTT
T ss_pred             cccccccccccccccee-EEeec----ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccce
Confidence            33445556665544322 11222    4667888999888654 44445567778889999998776 33 455557778


Q ss_pred             CCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCC
Q 045865          124 FTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPS  203 (225)
Q Consensus       124 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~  203 (225)
                      +.+|+.+.+..+ +.......+.. +.+|+.+.+..+.++ .+....|.+|.+|+.+.+..+ +...+  ..++.. |.+
T Consensus       262 ~~~l~~i~l~~~-i~~i~~~aF~~-c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~--~~aF~~-C~~  334 (379)
T 4h09_A          262 CTALKTLNFYAK-VKTVPYLLCSG-CSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQ--VYAFKN-CKA  334 (379)
T ss_dssp             CTTCCEEEECCC-CSEECTTTTTT-CTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEEC--TTTTTT-CTT
T ss_pred             eehhcccccccc-ceecccccccc-ccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEH--HHHhhC-CCC
Confidence            888998888654 32222234455 899999999888776 455558999999999998755 22111  235666 888


Q ss_pred             CcEEEccCC
Q 045865          204 LKYLLLSYS  212 (225)
Q Consensus       204 L~~L~l~~n  212 (225)
                      |+.+.+..+
T Consensus       335 L~~i~ip~~  343 (379)
T 4h09_A          335 LSTISYPKS  343 (379)
T ss_dssp             CCCCCCCTT
T ss_pred             CCEEEECCc
Confidence            998887544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.15  E-value=0.011  Score=39.77  Aligned_cols=35  Identities=26%  Similarity=0.323  Sum_probs=14.4

Q ss_pred             ccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCC
Q 045865           50 LESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSF   88 (225)
Q Consensus        50 L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l   88 (225)
                      ++.|+|++|.|....+.    .|..+++|+.|+|.+|.+
T Consensus        33 l~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPG----LLDALPALRTAHLGANPW   67 (130)
T ss_dssp             CSEEECTTSCCSSCCTT----TGGGCTTCCEEECCSSCC
T ss_pred             CCEEECCCCcCCccChh----hhhhccccCEEEecCCCe
Confidence            44444444444432222    233444444444444433

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.43  E-value=0.0074  Score=40.61  Aligned_cols=39  Identities=18%  Similarity=0.081  Sum_probs=35.1

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCccc
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIA   61 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~   61 (225)
                      +..++.|+|++|++.    .++...|..+++|++|+|.+|++.
T Consensus        30 p~~l~~L~Ls~N~l~----~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           30 PVDTTELVLTGNNLT----ALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             CTTCSEEECTTSCCS----SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CcCCCEEECCCCcCC----ccChhhhhhccccCEEEecCCCee
Confidence            346899999999998    788899999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	225
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 6e-08
 Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 11/110 (10%)

Query: 25  LDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLS 84
           L          +   + S  +  + L  L L  N I        I  +S L  L+ L  +
Sbjct: 284 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI------SDISPVSSLTKLQRLFFA 337

Query: 85  GNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLES 134
            N    S +SSL +L+++  L+   N++        L N T +  L L  
Sbjct: 338 NNKV--SDVSSLANLTNINWLSAGHNQISDLT---PLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 8/123 (6%)

Query: 36  SWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSS 95
              L A+  +    L  L    N      + E I  +S L NL  L L  N+ ++  +S 
Sbjct: 267 ELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISP 324

Query: 96  LTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNL 155
           ++ L+ L+ L    N++     V  L N TN+ +L+       IS L  +A+    +  L
Sbjct: 325 VSSLTKLQRLFFANNKVSD---VSSLANLTNINWLSA--GHNQISDLTPLAN-LTRITQL 378

Query: 156 SMS 158
            ++
Sbjct: 379 GLN 381

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 37/182 (20%), Positives = 68/182 (37%), Gaps = 34/182 (18%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
              L+ L L  N++      + I  L+ L NL  L+L+ N  +N  L+ L+ L+ L  L 
Sbjct: 218 LTNLDELSLNGNQL------KDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELK 269

Query: 107 LLWNRLEGSIDVKELHNFTNLEY-----------------LTLESSSLHISLLQSIASIF 149
           L  N++     +  L   TNLE                    L     +IS +  ++S  
Sbjct: 270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSS-L 328

Query: 150 PSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLL 209
             L+ L  +  +V+ V       +  ++        +I+  T        ++  +  L L
Sbjct: 329 TKLQRLFFANNKVSDV---SSLANLTNINWLSAGHNQISDLTPL-----ANLTRITQLGL 380

Query: 210 SY 211
           + 
Sbjct: 381 ND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 7e-04
 Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 8/83 (9%)

Query: 47  FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 106
             +     L +  +   V        + L+ +  L        +  +  + +L++L  +N
Sbjct: 21  LAEKMKTVLGKTNVTDTVS------QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 72

Query: 107 LLWNRLEGSIDVKELHNFTNLEY 129
              N+L     +K L    ++  
Sbjct: 73  FSNNQLTDITPLKNLTKLVDILM 95

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 1e-06
 Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 7/130 (5%)

Query: 79  KMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLH 138
           ++L+L+      ++L  L  L  +  L+L  NRL              L  L +  +S +
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-----ALAALRCLEVLQASDN 53

Query: 139 ISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIG 198
                   +  P L+ L +    +      Q       L   +++   +       + + 
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 113

Query: 199 ESMPSLKYLL 208
           E +PS+  +L
Sbjct: 114 EMLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 6e-05
 Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 9/114 (7%)

Query: 44  FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103
                 +  LDL+ N++           L+ L  L++L    +      +  + +L  L+
Sbjct: 16  LEQLLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQ--ASDNALENVDGVANLPRLQ 68

Query: 104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLH--ISLLQSIASIFPSLKNL 155
            L L  NRL+ S  ++ L +   L  L L+ +SL     + + +A + PS+ ++
Sbjct: 69  ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 9e-06
 Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 13/94 (13%)

Query: 50  LESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNN----SILSSLTHLSSLRSL 105
           ++SLD+   +++   +    E L  L   +++ L            I S+L    +L  L
Sbjct: 4   IQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 106 NLLWNRLEGSIDVKEL-----HNFTNLEYLTLES 134
           NL  N L G + V  +          ++ L+L++
Sbjct: 61  NLRSNEL-GDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 1e-04
 Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 10/113 (8%)

Query: 77  NLKMLNLSGNSFNNSILSSL-THLSSLRSLNLLWNRLEGSIDVKE----LHNFTNLEYLT 131
           +++ L++     +++  + L   L   + + L    L      K+    L     L  L 
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAELN 61

Query: 132 LESSSLH----ISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHF 180
           L S+ L       +LQ + +    ++ LS+  C + G   G      ++L   
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTL 114

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 3e-04
 Identities = 16/93 (17%), Positives = 27/93 (29%), Gaps = 5/93 (5%)

Query: 29  YIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSF 88
                     L   L  P   L  L L    ++    +     L   ++L+ L+LS N  
Sbjct: 350 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409

Query: 89  NNSILSSL-----THLSSLRSLNLLWNRLEGSI 116
            ++ +  L          L  L L        +
Sbjct: 410 GDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM 442

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 3e-04
 Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 3/90 (3%)

Query: 25  LDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLS 84
           LD+      +  W   A L    QQ + + L    +      +    L     L  LNL 
Sbjct: 7   LDIQCEELSDARW---AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 85  GNSFNNSILSSLTHLSSLRSLNLLWNRLEG 114
            N   +  +  +       S  +    L+ 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 41.7 bits (96), Expect = 3e-05
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 82  NLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLE 133
           +L  N    ++   LT L  L SLN+ +N L G I   +  N    +     
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI--PQGGNLQRFDVSAYA 299

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 36/175 (20%), Positives = 59/175 (33%), Gaps = 14/175 (8%)

Query: 50  LESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLW 109
              LDL  NKI    + +       L NL  L L  N  +     +   L  L  L L  
Sbjct: 33  TALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 110 NRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQ 169
           N+L+  +  K       L     E + +  S+   +      +  L  +  + +G+  G 
Sbjct: 89  NQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSSGIENGA 145

Query: 170 GFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRILHQ 224
            F   K L +  +       +T+   I     PSL  L L  + +    +  L  
Sbjct: 146 -FQGMKKLSYIRIA------DTNITTIPQGLPPSLTELHLDGNKITKVDAASLKG 193

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 16/104 (15%), Positives = 43/104 (41%), Gaps = 4/104 (3%)

Query: 81  LNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHIS 140
           L+L+G + +  +   L     + +     + ++  +   E  +   ++++ L +S + +S
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLA--EHFSPFRVQHMDLSNSVIEVS 61

Query: 141 LLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRF 184
            L  I S    L+NLS+    ++  +         +L   ++  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPI-VNTLAKNSNLVRLNLSG 104

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 29  YIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSF 88
              S   +   + +      +L +L    NKI        I  L+ L NL  ++L  N  
Sbjct: 154 QYLSIGNAQVSDLTPLANLSKLTTLKADDNKI------SDISPLASLPNLIEVHLKNNQI 207

Query: 89  NNSILSSLTHLSSLRSLNL 107
           ++  +S L + S+L  + L
Sbjct: 208 SD--VSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 70  ERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEY 129
             L+ L+ L  L    N  ++  +S L  L +L  ++L  N++        L N +NL  
Sbjct: 167 TPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVS---PLANTSNLFI 221

Query: 130 LTLE 133
           +TL 
Sbjct: 222 VTLT 225

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 35.2 bits (79), Expect = 0.004
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 14/96 (14%)

Query: 63  CVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELH 122
              NE         +L+ LN+S    NN ++        L  L   +N L    +V EL 
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVS----NNKLIELPALPPRLERLIASFNHLA---EVPEL- 322

Query: 123 NFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMS 158
              NL+ L +E +      L+    I  S+++L M+
Sbjct: 323 -PQNLKQLHVEYNP-----LREFPDIPESVEDLRMN 352

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	225
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.83
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.81
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.79
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.77
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.71
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.64
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.61
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.61
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.6
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.59
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.58
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.58
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.57
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.55
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.29
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.26
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.24
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.1
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.09
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.09
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.63
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.61
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.49
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.43
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.35
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.27
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.13

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=9.5e-27  Score=182.01  Aligned_cols=207  Identities=22%  Similarity=0.318  Sum_probs=154.1

Q ss_pred             CCCcccC--CCceeecCCc--CceEEeeccccccccchhHHhhhhhcCCCCccEEEccC-CcccCcchhhHHHHHhcCCC
Q 045865            3 GATDCCQ--WERVECSNTT--GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQ-NKIAGCVENEGIERLSRLNN   77 (225)
Q Consensus         3 ~~~~~c~--~~~~~~~~~~--~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~~~~l~~   77 (225)
                      .++|||.  |.|+.|+...  .+|++|+++++.+...  .-.+..+.++++|++|++++ |.+.+.+|+    .+.++++
T Consensus        29 ~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~--~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~----~i~~L~~  102 (313)
T d1ogqa_          29 PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP--YPIPSSLANLPYLNFLYIGGINNLVGPIPP----AIAKLTQ  102 (313)
T ss_dssp             TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSC--EECCGGGGGCTTCSEEEEEEETTEESCCCG----GGGGCTT
T ss_pred             CCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCC--CCCChHHhcCcccccccccccccccccccc----ccccccc
Confidence            4679994  9999998643  4899999999988632  12345788999999999986 788877887    6899999


Q ss_pred             CCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHh----------
Q 045865           78 LKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIAS----------  147 (225)
Q Consensus        78 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~----------  147 (225)
                      |++|++++|.+.+..+..+..+..|+.++++.|.+...+|. .+..++.++.+++.+|.+.+.+|..+..          
T Consensus       103 L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~-~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~  181 (313)
T d1ogqa_         103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI  181 (313)
T ss_dssp             CSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEEC
T ss_pred             cchhhhccccccccccccccchhhhcccccccccccccCch-hhccCcccceeecccccccccccccccccccccccccc
Confidence            99999999998876677777777888888888776655555 6667777777777776655433333333          


Q ss_pred             -------------------------------------hCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccc
Q 045865          148 -------------------------------------IFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALN  190 (225)
Q Consensus       148 -------------------------------------~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~  190 (225)
                                                           .+++++.+++++|.+.+.. . .+..+++|+.|++++|  ++.
T Consensus       182 ~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~-~~~~~~~L~~L~Ls~N--~l~  257 (313)
T d1ogqa_         182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-G-KVGLSKNLNGLDLRNN--RIY  257 (313)
T ss_dssp             CSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG-G-GCCCCTTCCEEECCSS--CCE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c-ccccccccccccCccC--eec
Confidence                                                 0334444444444444332 2 3667788999999999  556


Q ss_pred             hhHHHHHhhcCCCCcEEEccCCcCCCccchh
Q 045865          191 TSFLQIIGESMPSLKYLLLSYSTLGTNSSRI  221 (225)
Q Consensus       191 ~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~  221 (225)
                      +.+|..+++ +++|+.|+|++|+|+|.+|+.
T Consensus       258 g~iP~~l~~-L~~L~~L~Ls~N~l~g~iP~~  287 (313)
T d1ogqa_         258 GTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             ECCCGGGGG-CTTCCEEECCSSEEEEECCCS
T ss_pred             ccCChHHhC-CCCCCEEECcCCcccccCCCc
Confidence            678888998 999999999999999988864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.3e-22  Score=151.90  Aligned_cols=180  Identities=18%  Similarity=0.215  Sum_probs=151.1

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH   98 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~   98 (225)
                      +..++.|+|++|.+.    .+++..|.++++|++|++++|.+.. ++.     +..+++|++|++++|.+.. .+..+..
T Consensus        30 p~~l~~L~Ls~N~i~----~l~~~~f~~l~~L~~L~L~~N~l~~-l~~-----~~~l~~L~~L~Ls~N~l~~-~~~~~~~   98 (266)
T d1p9ag_          30 PKDTTILHLSENLLY----TFSLATLMPYTRLTQLNLDRAELTK-LQV-----DGTLPVLGTLDLSHNQLQS-LPLLGQT   98 (266)
T ss_dssp             CTTCCEEECTTSCCS----EEEGGGGTTCTTCCEEECTTSCCCE-EEC-----CSCCTTCCEEECCSSCCSS-CCCCTTT
T ss_pred             CcCCCEEECcCCcCC----CcCHHHhhccccccccccccccccc-ccc-----ccccccccccccccccccc-ccccccc
Confidence            357899999999998    6788889999999999999999976 443     5789999999999999976 4567788


Q ss_pred             CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc
Q 045865           99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE  178 (225)
Q Consensus        99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  178 (225)
                      +++|+.|+++.+.+. .++...+..+.+++.+++.+|.+....+..+.. +++++.+++++|.+++..+. .+..+++|+
T Consensus        99 l~~L~~L~l~~~~~~-~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~-l~~l~~l~l~~N~l~~~~~~-~~~~l~~L~  175 (266)
T d1p9ag_          99 LPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTP-TPKLEKLSLANNNLTELPAG-LLNGLENLD  175 (266)
T ss_dssp             CTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT-CTTCCEEECTTSCCSCCCTT-TTTTCTTCC
T ss_pred             ccccccccccccccc-eeeccccccccccccccccccccceeccccccc-cccchhcccccccccccCcc-ccccccccc
Confidence            999999999999987 444447788899999999999987544444555 89999999999999855445 889999999


Q ss_pred             EEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCC
Q 045865          179 HFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGT  216 (225)
Q Consensus       179 ~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~  216 (225)
                      +|++++|+|   ..+|..+.. +++|+.|+|++|++.-
T Consensus       176 ~L~Ls~N~L---~~lp~~~~~-~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         176 TLLLQENSL---YTIPKGFFG-SHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             EEECCSSCC---CCCCTTTTT-TCCCSEEECCSCCBCC
T ss_pred             eeecccCCC---cccChhHCC-CCCCCEEEecCCCCCC
Confidence            999999966   367777777 9999999999998863

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2e-20  Score=143.78  Aligned_cols=190  Identities=17%  Similarity=0.137  Sum_probs=128.2

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhH---------------------HHHHhcCCC
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEG---------------------IERLSRLNN   77 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~---------------------~~~~~~l~~   77 (225)
                      +..+++|+|++|++.    .+++..|.+++.|+.|++++|.+....+...                     ...+..+++
T Consensus        31 p~~~~~L~Ls~N~i~----~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~  106 (284)
T d1ozna_          31 PAASQRIFLHGNRIS----HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR  106 (284)
T ss_dssp             CTTCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred             CCCCCEEECcCCcCC----CCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhccccc
Confidence            346789999999997    7888889999999999999987654322200                     013555666


Q ss_pred             CCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEec
Q 045865           78 LKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSM  157 (225)
Q Consensus        78 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l  157 (225)
                      |++|++++|.+....+..+....+|+.+++.+|.+. .++...+..+.+|+.|++.+|.+....+..+.. +++|+.+++
T Consensus       107 L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~-l~~L~~l~l  184 (284)
T d1ozna_         107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG-LHSLDRLLL  184 (284)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEEC
T ss_pred             CCEEecCCcccccccccccchhcccchhhhcccccc-ccChhHhccccchhhcccccCcccccchhhhcc-ccccchhhh
Confidence            777777776665544555556666777777777665 444435666677777777777766444444555 677777777


Q ss_pred             cccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCcc
Q 045865          158 SFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNS  218 (225)
Q Consensus       158 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~  218 (225)
                      ++|.+++..+. .|.++++|+.++++.|++  .+..+..++. +++|+.|++++|++....
T Consensus       185 ~~N~l~~i~~~-~f~~l~~L~~L~l~~N~i--~~~~~~~~~~-~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         185 HQNRVAHVHPH-AFRDLGRLMTLYLFANNL--SALPTEALAP-LRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             CSSCCCEECTT-TTTTCTTCCEEECCSSCC--SCCCHHHHTT-CTTCCEEECCSSCEECSG
T ss_pred             hhccccccChh-Hhhhhhhccccccccccc--cccccccccc-ccccCEEEecCCCCCCCc
Confidence            77777655455 677777777777777744  3344556666 777777777777776543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.81  E-value=4.1e-20  Score=143.38  Aligned_cols=197  Identities=18%  Similarity=0.245  Sum_probs=130.3

Q ss_pred             cCCCceeecCC---------cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCC
Q 045865            8 CQWERVECSNT---------TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNL   78 (225)
Q Consensus         8 c~~~~~~~~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L   78 (225)
                      |.+..+.|...         +..++.|++++|++.    ++++..|.++++|++|++++|.+....+.    .|..+++|
T Consensus        10 c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~----~l~~~~f~~l~~L~~L~l~~n~~~~i~~~----~f~~l~~L   81 (305)
T d1xkua_          10 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKIT----EIKDGDFKNLKNLHTLILINNKISKISPG----AFAPLVKL   81 (305)
T ss_dssp             EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSSCCCCBCTT----TTTTCTTC
T ss_pred             ecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCC----CcChhHhhccccccccccccccccccchh----hhhCCCcc
Confidence            55667777642         367899999999998    78888899999999999999999986666    58899999


Q ss_pred             CEEECCCCCCChhhH---------------------H--------------------------hhhcCCCCCEEEcCCCC
Q 045865           79 KMLNLSGNSFNNSIL---------------------S--------------------------SLTHLSSLRSLNLLWNR  111 (225)
Q Consensus        79 ~~L~l~~~~l~~~~~---------------------~--------------------------~l~~l~~L~~L~l~~n~  111 (225)
                      ++|++++|.++....                     .                          .+..+++|+.+++.+|.
T Consensus        82 ~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~  161 (305)
T d1xkua_          82 ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  161 (305)
T ss_dssp             CEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             CEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC
Confidence            999998886643111                     0                          12233444555555544


Q ss_pred             CCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccch
Q 045865          112 LEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNT  191 (225)
Q Consensus       112 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~  191 (225)
                      +. .++.   ..+++++.+++.+|......+..+.. ++.++.|++++|.+++..+. .+.++++|++|++++|+|   .
T Consensus       162 l~-~l~~---~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~l~~L~~s~n~l~~~~~~-~~~~l~~L~~L~L~~N~L---~  232 (305)
T d1xkua_         162 IT-TIPQ---GLPPSLTELHLDGNKITKVDAASLKG-LNNLAKLGLSFNSISAVDNG-SLANTPHLRELHLNNNKL---V  232 (305)
T ss_dssp             CC-SCCS---SCCTTCSEEECTTSCCCEECTGGGTT-CTTCCEEECCSSCCCEECTT-TGGGSTTCCEEECCSSCC---S
T ss_pred             cc-ccCc---ccCCccCEEECCCCcCCCCChhHhhc-cccccccccccccccccccc-cccccccceeeecccccc---c
Confidence            43 2221   12345566666665554443444454 66777777777777644343 667777777777777755   3


Q ss_pred             hHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865          192 SFLQIIGESMPSLKYLLLSYSTLGTNSSRIL  222 (225)
Q Consensus       192 ~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~  222 (225)
                      .+|.++.. +++|+.|++++|+|+......|
T Consensus       233 ~lp~~l~~-l~~L~~L~Ls~N~i~~i~~~~f  262 (305)
T d1xkua_         233 KVPGGLAD-HKYIQVVYLHNNNISAIGSNDF  262 (305)
T ss_dssp             SCCTTTTT-CSSCCEEECCSSCCCCCCTTSS
T ss_pred             cccccccc-ccCCCEEECCCCccCccChhhc
Confidence            44556666 7777777777777776544433

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.5e-19  Score=136.42  Aligned_cols=183  Identities=17%  Similarity=0.153  Sum_probs=143.9

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH   98 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~   98 (225)
                      .....+++-+++++.    ++++...   +.+++|++++|.|....+.    .|..+++|++|++++|.++.. + .+..
T Consensus         9 ~~~~~~v~C~~~~L~----~iP~~lp---~~l~~L~Ls~N~i~~l~~~----~f~~l~~L~~L~L~~N~l~~l-~-~~~~   75 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT----ALPPDLP---KDTTILHLSENLLYTFSLA----TLMPYTRLTQLNLDRAELTKL-Q-VDGT   75 (266)
T ss_dssp             STTCCEEECTTSCCS----SCCSCCC---TTCCEEECTTSCCSEEEGG----GGTTCTTCCEEECTTSCCCEE-E-CCSC
T ss_pred             cCCCeEEEccCCCCC----eeCcCcC---cCCCEEECcCCcCCCcCHH----Hhhcccccccccccccccccc-c-cccc
Confidence            344556789998887    5544321   4789999999999885444    688999999999999999863 2 3567


Q ss_pred             CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc
Q 045865           99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE  178 (225)
Q Consensus        99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  178 (225)
                      +++|++|++++|.+. ..+. .+..+++|+.+++..+.+.......+.. +.+++.|++++|.+... +...+..++.++
T Consensus        76 l~~L~~L~Ls~N~l~-~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~l~~L~l~~n~l~~l-~~~~~~~l~~l~  151 (266)
T d1p9ag_          76 LPVLGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRG-LGELQELYLKGNELKTL-PPGLLTPTPKLE  151 (266)
T ss_dssp             CTTCCEEECCSSCCS-SCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTT-CTTCCEEECTTSCCCCC-CTTTTTTCTTCC
T ss_pred             ccccccccccccccc-cccc-ccccccccccccccccccceeecccccc-cccccccccccccccee-ccccccccccch
Confidence            899999999999997 4454 7888999999999999877544444555 89999999999999844 444888999999


Q ss_pred             EEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865          179 HFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL  222 (225)
Q Consensus       179 ~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~  222 (225)
                      .+++++|++  ....+..+.. +++|+.|+|++|+|+ .+|+.+
T Consensus       152 ~l~l~~N~l--~~~~~~~~~~-l~~L~~L~Ls~N~L~-~lp~~~  191 (266)
T d1p9ag_         152 KLSLANNNL--TELPAGLLNG-LENLDTLLLQENSLY-TIPKGF  191 (266)
T ss_dssp             EEECTTSCC--SCCCTTTTTT-CTTCCEEECCSSCCC-CCCTTT
T ss_pred             hcccccccc--cccCcccccc-ccccceeecccCCCc-ccChhH
Confidence            999999965  3333455677 999999999999999 555543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.1e-18  Score=133.91  Aligned_cols=145  Identities=15%  Similarity=0.204  Sum_probs=124.6

Q ss_pred             HHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccc
Q 045865           38 YLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSID  117 (225)
Q Consensus        38 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  117 (225)
                      .+++..|.++++|++|+++.|.+....+.    .+..+++|+.+++++|.++...+..+..++.|++|++.+|.+. .++
T Consensus        95 ~l~~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~-~l~  169 (284)
T d1ozna_          95 SVDPATFHGLGRLHTLHLDRCGLQELGPG----LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVP  169 (284)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EEC
T ss_pred             cccchhhcccccCCEEecCCccccccccc----ccchhcccchhhhccccccccChhHhccccchhhcccccCccc-ccc
Confidence            34455788899999999999998765444    5778999999999999999877788889999999999999997 666


Q ss_pred             hhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCcccc
Q 045865          118 VKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIAL  189 (225)
Q Consensus       118 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~  189 (225)
                      ...+..+++|+.+++..|.+.+..+..+.. +++|++|++++|.+.+..+. .|..+++|+++++++|++..
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~-l~~L~~L~l~~N~i~~~~~~-~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRD-LGRLMTLYLFANNLSALPTE-ALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCSCCCHH-HHTTCTTCCEEECCSSCEEC
T ss_pred             hhhhccccccchhhhhhccccccChhHhhh-hhhccccccccccccccccc-ccccccccCEEEecCCCCCC
Confidence            558889999999999999998766777777 99999999999999866555 89999999999999997643

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=4.3e-17  Score=119.57  Aligned_cols=164  Identities=20%  Similarity=0.258  Sum_probs=120.5

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL   99 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l   99 (225)
                      ..++.|+++++.+.    .+.+  +..+++|++|++++|.+.. .++     +..+++|+.|++++|.++.. + .+..+
T Consensus        46 ~~L~~L~l~~~~i~----~l~~--l~~l~~L~~L~L~~n~i~~-l~~-----~~~l~~L~~L~l~~n~i~~l-~-~l~~l  111 (210)
T d1h6ta2          46 NSIDQIIANNSDIK----SVQG--IQYLPNVTKLFLNGNKLTD-IKP-----LANLKNLGWLFLDENKVKDL-S-SLKDL  111 (210)
T ss_dssp             HTCCEEECTTSCCC----CCTT--GGGCTTCCEEECCSSCCCC-CGG-----GTTCTTCCEEECCSSCCCCG-G-GGTTC
T ss_pred             cCccEEECcCCCCC----Cchh--HhhCCCCCEEeCCCccccC-ccc-----cccCcccccccccccccccc-c-ccccc
Confidence            35778888888876    3332  5678888888888888876 333     57788888888888888763 3 47778


Q ss_pred             CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcE
Q 045865          100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEH  179 (225)
Q Consensus       100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  179 (225)
                      ++|+.+++.++.+. .++  .+..++.++.+++.+|.+.+.  ..... +++|+.+++++|.+++. +  .+.++++|+.
T Consensus       112 ~~L~~L~l~~~~~~-~~~--~l~~l~~l~~l~~~~n~l~~~--~~~~~-l~~L~~l~l~~n~l~~i-~--~l~~l~~L~~  182 (210)
T d1h6ta2         112 KKLKSLSLEHNGIS-DIN--GLVHLPQLESLYLGNNKITDI--TVLSR-LTKLDTLSLEDNQISDI-V--PLAGLTKLQN  182 (210)
T ss_dssp             TTCCEEECTTSCCC-CCG--GGGGCTTCCEEECCSSCCCCC--GGGGG-CTTCSEEECCSSCCCCC-G--GGTTCTTCCE
T ss_pred             cccccccccccccc-ccc--ccccccccccccccccccccc--ccccc-ccccccccccccccccc-c--cccCCCCCCE
Confidence            88888888888775 443  567778888888888887632  23445 78888888888888743 2  3678888888


Q ss_pred             EEccCCccccchhHHHHHhhcCCCCcEEEccC
Q 045865          180 FDMRFARIALNTSFLQIIGESMPSLKYLLLSY  211 (225)
Q Consensus       180 l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~  211 (225)
                      |++++|+|.   .++ .+.. +++|+.|+|++
T Consensus       183 L~Ls~N~i~---~l~-~l~~-l~~L~~L~Ls~  209 (210)
T d1h6ta2         183 LYLSKNHIS---DLR-ALAG-LKNLDVLELFS  209 (210)
T ss_dssp             EECCSSCCC---BCG-GGTT-CTTCSEEEEEE
T ss_pred             EECCCCCCC---CCh-hhcC-CCCCCEEEccC
Confidence            888888663   333 4676 88888888864

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.71  E-value=6.2e-19  Score=137.15  Aligned_cols=183  Identities=19%  Similarity=0.255  Sum_probs=124.1

Q ss_pred             CceEEeeccc-cccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865           20 GRVIALDLSY-IYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH   98 (225)
Q Consensus        20 ~~v~~l~l~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~   98 (225)
                      ..++.|++++ |++.+   .+ +..+.++++|++|++++|.+.+..+.    .+..++.|+.++++.|.+....|..+..
T Consensus        76 ~~L~~L~Ls~~N~l~g---~i-P~~i~~L~~L~~L~Ls~N~l~~~~~~----~~~~~~~L~~l~l~~N~~~~~~p~~l~~  147 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVG---PI-PPAIAKLTQLHYLYITHTNVSGAIPD----FLSQIKTLVTLDFSYNALSGTLPPSISS  147 (313)
T ss_dssp             TTCSEEEEEEETTEES---CC-CGGGGGCTTCSEEEEEEECCEEECCG----GGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred             cccccccccccccccc---cc-ccccccccccchhhhccccccccccc----cccchhhhcccccccccccccCchhhcc
Confidence            4677777776 55542   23 34567777777777777777664444    3555666666666666555555555556


Q ss_pred             CCCCCEEEcCCCCCCCccch-----------------------------------------------hhhccCCCCceee
Q 045865           99 LSSLRSLNLLWNRLEGSIDV-----------------------------------------------KELHNFTNLEYLT  131 (225)
Q Consensus        99 l~~L~~L~l~~n~~~~~~~~-----------------------------------------------~~~~~l~~L~~l~  131 (225)
                      ++.++.+++.+|.+.+.+|.                                               ..+..+.+++.++
T Consensus       148 l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~  227 (313)
T d1ogqa_         148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH  227 (313)
T ss_dssp             CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred             Ccccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            66666666665554432222                                               0122345666677


Q ss_pred             cCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccC
Q 045865          132 LESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY  211 (225)
Q Consensus       132 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~  211 (225)
                      +..+.+.+.. ..+.. +++|+.|++++|.+++.+|. .++++++|++|++++|+  +.+.+|. +++ +++|+.+++.+
T Consensus       228 ~~~~~l~~~~-~~~~~-~~~L~~L~Ls~N~l~g~iP~-~l~~L~~L~~L~Ls~N~--l~g~iP~-~~~-L~~L~~l~l~~  300 (313)
T d1ogqa_         228 LAKNSLAFDL-GKVGL-SKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNN--LCGEIPQ-GGN-LQRFDVSAYAN  300 (313)
T ss_dssp             CCSSEECCBG-GGCCC-CTTCCEEECCSSCCEECCCG-GGGGCTTCCEEECCSSE--EEEECCC-STT-GGGSCGGGTCS
T ss_pred             cccccccccc-ccccc-ccccccccCccCeecccCCh-HHhCCCCCCEEECcCCc--ccccCCC-ccc-CCCCCHHHhCC
Confidence            7766665433 34555 88999999999999988888 89999999999999994  4567774 566 88999999999


Q ss_pred             Cc-CCCc
Q 045865          212 ST-LGTN  217 (225)
Q Consensus       212 n~-l~~~  217 (225)
                      |+ +.|.
T Consensus       301 N~~l~g~  307 (313)
T d1ogqa_         301 NKCLCGS  307 (313)
T ss_dssp             SSEEEST
T ss_pred             CccccCC
Confidence            97 6665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.4e-16  Score=122.04  Aligned_cols=189  Identities=23%  Similarity=0.261  Sum_probs=138.6

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCC-CCChhh-HHhh
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGN-SFNNSI-LSSL   96 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~-~~~l   96 (225)
                      ..+++.|+++++.+..   ......+.++++|++|++.++.+......    .+..+++|++|++++| .++... ...+
T Consensus        45 ~~~L~~LdLs~~~i~~---~~l~~l~~~c~~L~~L~L~~~~l~~~~~~----~l~~~~~L~~L~Ls~c~~itd~~l~~l~  117 (284)
T d2astb2          45 PFRVQHMDLSNSVIEV---STLHGILSQCSKLQNLSLEGLRLSDPIVN----TLAKNSNLVRLNLSGCSGFSEFALQTLL  117 (284)
T ss_dssp             CBCCCEEECTTCEECH---HHHHHHHTTBCCCSEEECTTCBCCHHHHH----HHTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred             CCCCCEEECCCCccCH---HHHHHHHHhCCCcccccccccCCCcHHHH----HHhcCCCCcCccccccccccccccchhh
Confidence            4578999999998864   33445678899999999999987654444    6888999999999996 566533 3344


Q ss_pred             hcCCCCCEEEcCCCC-CCCccchhhhcc-CCCCceeecCCC--CCcHHHHHHHHhhCCCCCEEeccccc-cccccccCCC
Q 045865           97 THLSSLRSLNLLWNR-LEGSIDVKELHN-FTNLEYLTLESS--SLHISLLQSIASIFPSLKNLSMSFCE-VNGVVRGQGF  171 (225)
Q Consensus        97 ~~l~~L~~L~l~~n~-~~~~~~~~~~~~-l~~L~~l~l~~~--~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~  171 (225)
                      ..+++|++|+++++. +.+......+.. .+.|+.|++.++  .+++.....+...+++|++|++++|. +++.... .+
T Consensus       118 ~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~-~l  196 (284)
T d2astb2         118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EF  196 (284)
T ss_dssp             HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GG
T ss_pred             HHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhh-hh
Confidence            578999999999974 332211113333 468999999875  35555454444449999999999975 6655555 77


Q ss_pred             CCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCcc
Q 045865          172 PHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNS  218 (225)
Q Consensus       172 ~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~  218 (225)
                      .++++|++|++++|. ..++.....+++ +++|+.|++.++ +++..
T Consensus       197 ~~~~~L~~L~L~~C~-~i~~~~l~~L~~-~~~L~~L~l~~~-~~d~~  240 (284)
T d2astb2         197 FQLNYLQHLSLSRCY-DIIPETLLELGE-IPTLKTLQVFGI-VPDGT  240 (284)
T ss_dssp             GGCTTCCEEECTTCT-TCCGGGGGGGGG-CTTCCEEECTTS-SCTTC
T ss_pred             cccCcCCEEECCCCC-CCChHHHHHHhc-CCCCCEEeeeCC-CCHHH
Confidence            889999999999974 334555566888 999999999998 55433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.7e-16  Score=115.42  Aligned_cols=148  Identities=21%  Similarity=0.333  Sum_probs=99.5

Q ss_pred             CCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCC
Q 045865           47 FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTN  126 (225)
Q Consensus        47 l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  126 (225)
                      ++.+++|+++++.+.. ..     .+..+++|++|++++|.++...+  +..+++|++|++++|.+. .++  .+..++.
T Consensus        39 l~~l~~L~l~~~~i~~-l~-----~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~  107 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS-ID-----GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT--PLANLTN  107 (199)
T ss_dssp             HTTCCEEECTTSCCCC-CT-----TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG--GGTTCTT
T ss_pred             hcCCCEEECCCCCCCC-cc-----ccccCCCcCcCccccccccCccc--ccCCcccccccccccccc-ccc--ccccccc
Confidence            5567777777777765 22     25677788888888877766332  667777888888777765 444  4667777


Q ss_pred             CceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcE
Q 045865          127 LEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKY  206 (225)
Q Consensus       127 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~  206 (225)
                      |+.+++.++.....  ..+.. +++|+.+++++|.+.. .+  .+..+++|+.+++.+|++..   ++ .++. +++|+.
T Consensus       108 L~~L~l~~~~~~~~--~~~~~-l~~L~~L~l~~n~l~~-~~--~l~~~~~L~~L~l~~n~l~~---l~-~l~~-l~~L~~  176 (199)
T d2omxa2         108 LTGLTLFNNQITDI--DPLKN-LTNLNRLELSSNTISD-IS--ALSGLTSLQQLNFSSNQVTD---LK-PLAN-LTTLER  176 (199)
T ss_dssp             CSEEECCSSCCCCC--GGGTT-CTTCSEEECCSSCCCC-CG--GGTTCTTCSEEECCSSCCCC---CG-GGTT-CTTCCE
T ss_pred             cccccccccccccc--cccch-hhhhHHhhhhhhhhcc-cc--cccccccccccccccccccC---Cc-cccC-CCCCCE
Confidence            77888877765532  22444 7778888888777652 22  36677778888888875532   22 2566 778888


Q ss_pred             EEccCCcCCC
Q 045865          207 LLLSYSTLGT  216 (225)
Q Consensus       207 L~l~~n~l~~  216 (225)
                      |++++|++++
T Consensus       177 L~ls~N~i~~  186 (199)
T d2omxa2         177 LDISSNKVSD  186 (199)
T ss_dssp             EECCSSCCCC
T ss_pred             EECCCCCCCC
Confidence            8888888775

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=8.4e-16  Score=113.88  Aligned_cols=172  Identities=20%  Similarity=0.303  Sum_probs=133.8

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL   99 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l   99 (225)
                      ..++.|++.++++.    .+.  .+.++++|++|++++|.+... .+     +..+++++.+++++|.++..  ..+..+
T Consensus        41 ~~L~~L~l~~~~i~----~l~--~l~~l~~L~~L~ls~n~i~~~-~~-----l~~l~~l~~l~~~~n~~~~i--~~l~~l  106 (227)
T d1h6ua2          41 DGITTLSAFGTGVT----TIE--GVQYLNNLIGLELKDNQITDL-AP-----LKNLTKITELELSGNPLKNV--SAIAGL  106 (227)
T ss_dssp             HTCCEEECTTSCCC----CCT--TGGGCTTCCEEECCSSCCCCC-GG-----GTTCCSCCEEECCSCCCSCC--GGGTTC
T ss_pred             CCcCEEECCCCCCC----cch--hHhcCCCCcEeecCCceeecc-cc-----cccccccccccccccccccc--cccccc
Confidence            47889999999887    442  378899999999999998763 33     78899999999999988753  357789


Q ss_pred             CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcE
Q 045865          100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEH  179 (225)
Q Consensus       100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  179 (225)
                      +.|+.++++++... ...  .+.....++.+.+..+.+...  ..+.. +++|+.|++++|.+.+..   .+.++++|+.
T Consensus       107 ~~L~~l~l~~~~~~-~~~--~~~~~~~~~~l~~~~~~~~~~--~~~~~-~~~L~~L~l~~n~~~~~~---~l~~l~~L~~  177 (227)
T d1h6ua2         107 QSIKTLDLTSTQIT-DVT--PLAGLSNLQVLYLDLNQITNI--SPLAG-LTNLQYLSIGNAQVSDLT---PLANLSKLTT  177 (227)
T ss_dssp             TTCCEEECTTSCCC-CCG--GGTTCTTCCEEECCSSCCCCC--GGGGG-CTTCCEEECCSSCCCCCG---GGTTCTTCCE
T ss_pred             cccccccccccccc-ccc--hhccccchhhhhchhhhhchh--hhhcc-ccccccccccccccccch---hhccccccee
Confidence            99999999998775 332  455667888888888776532  22455 889999999999886432   4788999999


Q ss_pred             EEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccc
Q 045865          180 FDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSS  219 (225)
Q Consensus       180 l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~  219 (225)
                      |++++|++..   ++ .++. +++|+.|++++|++++..|
T Consensus       178 L~Ls~n~l~~---l~-~l~~-l~~L~~L~Ls~N~lt~i~~  212 (227)
T d1h6ua2         178 LKADDNKISD---IS-PLAS-LPNLIEVHLKNNQISDVSP  212 (227)
T ss_dssp             EECCSSCCCC---CG-GGGG-CTTCCEEECTTSCCCBCGG
T ss_pred             cccCCCccCC---Ch-hhcC-CCCCCEEECcCCcCCCCcc
Confidence            9999996632   22 3677 9999999999999996544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=1.1e-15  Score=110.94  Aligned_cols=161  Identities=21%  Similarity=0.380  Sum_probs=130.1

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH   98 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~   98 (225)
                      ...++.|+++++.+.    .+.  .++.+++|++|++++|.+.. .++     +..+++|++|++++|.+....  .+..
T Consensus        39 l~~l~~L~l~~~~i~----~l~--~l~~l~nL~~L~Ls~N~l~~-~~~-----l~~l~~L~~L~l~~n~~~~~~--~l~~  104 (199)
T d2omxa2          39 LDQVTTLQADRLGIK----SID--GVEYLNNLTQINFSNNQLTD-ITP-----LKNLTKLVDILMNNNQIADIT--PLAN  104 (199)
T ss_dssp             HTTCCEEECTTSCCC----CCT--TGGGCTTCCEEECCSSCCCC-CGG-----GTTCTTCCEEECCSSCCCCCG--GGTT
T ss_pred             hcCCCEEECCCCCCC----Ccc--ccccCCCcCcCccccccccC-ccc-----ccCCccccccccccccccccc--cccc
Confidence            358899999999987    333  36789999999999999987 333     789999999999999887632  4788


Q ss_pred             CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc
Q 045865           99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE  178 (225)
Q Consensus        99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  178 (225)
                      ++.|+.++++++... ..+  .+..+++|+.+++++|.+...  ..+.. +++++.|++.+|.+++. +  .+.++++|+
T Consensus       105 l~~L~~L~l~~~~~~-~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~-~~~L~~L~l~~n~l~~l-~--~l~~l~~L~  175 (199)
T d2omxa2         105 LTNLTGLTLFNNQIT-DID--PLKNLTNLNRLELSSNTISDI--SALSG-LTSLQQLNFSSNQVTDL-K--PLANLTTLE  175 (199)
T ss_dssp             CTTCSEEECCSSCCC-CCG--GGTTCTTCSEEECCSSCCCCC--GGGTT-CTTCSEEECCSSCCCCC-G--GGTTCTTCC
T ss_pred             ccccccccccccccc-ccc--ccchhhhhHHhhhhhhhhccc--ccccc-cccccccccccccccCC-c--cccCCCCCC
Confidence            999999999999876 433  577889999999999988632  34566 89999999999998743 2  478999999


Q ss_pred             EEEccCCccccchhHHHHHhhcCCCCcEE
Q 045865          179 HFDMRFARIALNTSFLQIIGESMPSLKYL  207 (225)
Q Consensus       179 ~l~l~~n~i~~~~~~~~~l~~~~~~L~~L  207 (225)
                      +|++++|++..   ++ .++. +++|+.|
T Consensus       176 ~L~ls~N~i~~---i~-~l~~-L~~L~~L  199 (199)
T d2omxa2         176 RLDISSNKVSD---IS-VLAK-LTNLESL  199 (199)
T ss_dssp             EEECCSSCCCC---CG-GGGG-CTTCSEE
T ss_pred             EEECCCCCCCC---Cc-cccC-CCCCCcC
Confidence            99999997633   33 4677 9999876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.7e-15  Score=120.16  Aligned_cols=172  Identities=19%  Similarity=0.300  Sum_probs=99.2

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL   99 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l   99 (225)
                      ...+.++++++.+..    +.+  +..++.|++|++++|.+.. .+     .+..+++|+.|++++|.+++..  .+..+
T Consensus       197 ~~~~~l~l~~n~i~~----~~~--~~~~~~L~~L~l~~n~l~~-~~-----~l~~l~~L~~L~l~~n~l~~~~--~~~~~  262 (384)
T d2omza2         197 TNLESLIATNNQISD----ITP--LGILTNLDELSLNGNQLKD-IG-----TLASLTNLTDLDLANNQISNLA--PLSGL  262 (384)
T ss_dssp             TTCSEEECCSSCCCC----CGG--GGGCTTCCEEECCSSCCCC-CG-----GGGGCTTCSEEECCSSCCCCCG--GGTTC
T ss_pred             cccceeeccCCccCC----CCc--ccccCCCCEEECCCCCCCC-cc-----hhhcccccchhccccCccCCCC--ccccc
Confidence            455666777766652    222  2445667777777776665 22     2566677777777777766532  25566


Q ss_pred             CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcE
Q 045865          100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEH  179 (225)
Q Consensus       100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  179 (225)
                      ++|+.++++++.+. .++  .+..+..++.+.+..|.+.+.  ..+.. +++++.+++++|.+++..   .+..+++|++
T Consensus       263 ~~L~~L~l~~~~l~-~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~-~~~l~~L~ls~n~l~~l~---~l~~l~~L~~  333 (384)
T d2omza2         263 TKLTELKLGANQIS-NIS--PLAGLTALTNLELNENQLEDI--SPISN-LKNLTYLTLYFNNISDIS---PVSSLTKLQR  333 (384)
T ss_dssp             TTCSEEECCSSCCC-CCG--GGTTCTTCSEEECCSSCCSCC--GGGGG-CTTCSEEECCSSCCSCCG---GGGGCTTCCE
T ss_pred             ccCCEeeccCcccC-CCC--ccccccccccccccccccccc--cccch-hcccCeEECCCCCCCCCc---ccccCCCCCE
Confidence            77777777777665 332  344555666666666665431  22333 566666666666665321   2455666666


Q ss_pred             EEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccc
Q 045865          180 FDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSS  219 (225)
Q Consensus       180 l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~  219 (225)
                      |++++|++..   ++ .++. +++|+.|++++|+|++..|
T Consensus       334 L~L~~n~l~~---l~-~l~~-l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         334 LFFANNKVSD---VS-SLAN-LTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             EECCSSCCCC---CG-GGGG-CTTCCEEECCSSCCCBCGG
T ss_pred             EECCCCCCCC---Ch-hHcC-CCCCCEEECCCCcCCCChh
Confidence            6666664422   22 3555 6666666666666665443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.61  E-value=1.1e-15  Score=118.15  Aligned_cols=181  Identities=20%  Similarity=0.252  Sum_probs=130.3

Q ss_pred             eEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCC
Q 045865           22 VIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS  101 (225)
Q Consensus        22 v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~  101 (225)
                      .++++=++.++.    ++|+..   .+.+++|++++|.|....+.    .|..+++|++|++++|.+....+..|..++.
T Consensus        12 ~~~~~C~~~~L~----~lP~~l---~~~l~~L~Ls~N~i~~l~~~----~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~   80 (305)
T d1xkua_          12 LRVVQCSDLGLE----KVPKDL---PPDTALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKISKISPGAFAPLVK   80 (305)
T ss_dssp             TTEEECTTSCCC----SCCCSC---CTTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred             CCEEEecCCCCC----ccCCCC---CCCCCEEECcCCcCCCcChh----HhhccccccccccccccccccchhhhhCCCc
Confidence            356777777776    555533   25789999999999885544    5889999999999999999877888999999


Q ss_pred             CCEEEcCCCCCCCccch-----------------------------------------------hhhccCCCCceeecCC
Q 045865          102 LRSLNLLWNRLEGSIDV-----------------------------------------------KELHNFTNLEYLTLES  134 (225)
Q Consensus       102 L~~L~l~~n~~~~~~~~-----------------------------------------------~~~~~l~~L~~l~l~~  134 (225)
                      |+.|++.+|.+. .++.                                               ..+..+++|+.+++.+
T Consensus        81 L~~L~l~~n~l~-~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~  159 (305)
T d1xkua_          81 LERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD  159 (305)
T ss_dssp             CCEEECCSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred             cCEecccCCccC-cCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCcccccc
Confidence            999999998775 3222                                               1223345566666666


Q ss_pred             CCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcC
Q 045865          135 SSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTL  214 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l  214 (225)
                      |.+.. ++..  . .++|+.|++++|.++...+. .+.+++.++.|++++|++  .+..+..+.. +++|++|++++|.|
T Consensus       160 n~l~~-l~~~--~-~~~L~~L~l~~n~~~~~~~~-~~~~~~~l~~L~~s~n~l--~~~~~~~~~~-l~~L~~L~L~~N~L  231 (305)
T d1xkua_         160 TNITT-IPQG--L-PPSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSI--SAVDNGSLAN-TPHLRELHLNNNKL  231 (305)
T ss_dssp             SCCCS-CCSS--C-CTTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCC--CEECTTTGGG-STTCCEEECCSSCC
T ss_pred             CCccc-cCcc--c-CCccCEEECCCCcCCCCChh-Hhhccccccccccccccc--cccccccccc-cccceeeecccccc
Confidence            65542 2211  1 56677777777776655455 778888999999999955  3333556677 99999999999999


Q ss_pred             CCccchhhc
Q 045865          215 GTNSSRILH  223 (225)
Q Consensus       215 ~~~~~~~~~  223 (225)
                      +. +|+.|.
T Consensus       232 ~~-lp~~l~  239 (305)
T d1xkua_         232 VK-VPGGLA  239 (305)
T ss_dssp             SS-CCTTTT
T ss_pred             cc-cccccc
Confidence            84 455553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.61  E-value=1.7e-16  Score=114.81  Aligned_cols=128  Identities=19%  Similarity=0.197  Sum_probs=73.0

Q ss_pred             EeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCC
Q 045865           24 ALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR  103 (225)
Q Consensus        24 ~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~  103 (225)
                      +++.+++++.    ++++...   +.+++|++++|.|....+..   .|..+++|++|++++|.+....+..+..++.|+
T Consensus        12 ~v~Cs~~~L~----~iP~~lp---~~l~~L~Ls~N~i~~~~~~~---~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~   81 (192)
T d1w8aa_          12 TVDCTGRGLK----EIPRDIP---LHTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ   81 (192)
T ss_dssp             EEECTTSCCS----SCCSCCC---TTCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             EEEEeCCCcC----ccCCCCC---CCCCEEEeCCCCCccccccc---ccCCCceEeeeeccccccccccccccccccccc
Confidence            4555555554    3333221   35566666666665433221   355666666666666666665556666666666


Q ss_pred             EEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccc
Q 045865          104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN  163 (225)
Q Consensus       104 ~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  163 (225)
                      +|++++|.+. .++...|..+++|+.|+|.+|.++...+..+.. +++|+++++++|.+.
T Consensus        82 ~L~Ls~N~l~-~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~-l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          82 ELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH-LNSLTSLNLASNPFN  139 (192)
T ss_dssp             EEECCSCCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTT-CTTCCEEECTTCCBC
T ss_pred             eeeecccccc-ccCHHHHhCCCcccccccCCccccccCHHHhcC-Ccccccccccccccc
Confidence            6666666665 444435666666666666666665433344444 666666666666654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=8.5e-15  Score=116.05  Aligned_cols=168  Identities=24%  Similarity=0.342  Sum_probs=136.6

Q ss_pred             CcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhh
Q 045865           18 TTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT   97 (225)
Q Consensus        18 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~   97 (225)
                      ....++++++++|.+..    +  ..+..+++|+.|++.+|.+.+ .++     +..+++|++|+++++.+.+..  .+.
T Consensus       217 ~~~~L~~L~l~~n~l~~----~--~~l~~l~~L~~L~l~~n~l~~-~~~-----~~~~~~L~~L~l~~~~l~~~~--~~~  282 (384)
T d2omza2         217 ILTNLDELSLNGNQLKD----I--GTLASLTNLTDLDLANNQISN-LAP-----LSGLTKLTELKLGANQISNIS--PLA  282 (384)
T ss_dssp             GCTTCCEEECCSSCCCC----C--GGGGGCTTCSEEECCSSCCCC-CGG-----GTTCTTCSEEECCSSCCCCCG--GGT
T ss_pred             ccCCCCEEECCCCCCCC----c--chhhcccccchhccccCccCC-CCc-----ccccccCCEeeccCcccCCCC--ccc
Confidence            35688999999998873    2  246788999999999999887 333     688999999999999987642  467


Q ss_pred             cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCC
Q 045865           98 HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSL  177 (225)
Q Consensus        98 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L  177 (225)
                      .++.++.+.+..|.+. .++  .+..+++++.+++++|.+.+..  .+.. +++|+.|++++|.+++ .+  .+.++++|
T Consensus       283 ~~~~l~~l~~~~n~l~-~~~--~~~~~~~l~~L~ls~n~l~~l~--~l~~-l~~L~~L~L~~n~l~~-l~--~l~~l~~L  353 (384)
T d2omza2         283 GLTALTNLELNENQLE-DIS--PISNLKNLTYLTLYFNNISDIS--PVSS-LTKLQRLFFANNKVSD-VS--SLANLTNI  353 (384)
T ss_dssp             TCTTCSEEECCSSCCS-CCG--GGGGCTTCSEEECCSSCCSCCG--GGGG-CTTCCEEECCSSCCCC-CG--GGGGCTTC
T ss_pred             cccccccccccccccc-ccc--ccchhcccCeEECCCCCCCCCc--cccc-CCCCCEEECCCCCCCC-Ch--hHcCCCCC
Confidence            8899999999999886 433  5778899999999999988543  2566 9999999999999874 32  47889999


Q ss_pred             cEEEccCCccccchhHHHHHhhcCCCCcEEEccCCc
Q 045865          178 EHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYST  213 (225)
Q Consensus       178 ~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~  213 (225)
                      ++|++++|++  .+ ++. +.. +++|+.|+|++|+
T Consensus       354 ~~L~l~~N~l--~~-l~~-l~~-l~~L~~L~L~~Na  384 (384)
T d2omza2         354 NWLSAGHNQI--SD-LTP-LAN-LTRITQLGLNDQA  384 (384)
T ss_dssp             CEEECCSSCC--CB-CGG-GTT-CTTCSEEECCCEE
T ss_pred             CEEECCCCcC--CC-Chh-hcc-CCCCCEeeCCCCc
Confidence            9999999965  33 232 777 9999999999984

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=3.9e-15  Score=108.98  Aligned_cols=149  Identities=19%  Similarity=0.340  Sum_probs=121.4

Q ss_pred             CCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCC
Q 045865           47 FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTN  126 (225)
Q Consensus        47 l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  126 (225)
                      +..++.|+++++.+.. .+.     +..+++|++|++++|.+++..  .+..+++|++|++++|.+. .++  .+..+++
T Consensus        45 L~~L~~L~l~~~~i~~-l~~-----l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~  113 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKS-VQG-----IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK-DLS--SLKDLKK  113 (210)
T ss_dssp             HHTCCEEECTTSCCCC-CTT-----GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CGG--GGTTCTT
T ss_pred             hcCccEEECcCCCCCC-chh-----HhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc-ccc--ccccccc
Confidence            5678899999999876 332     688999999999999998743  3678999999999999987 555  5778899


Q ss_pred             CceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcE
Q 045865          127 LEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKY  206 (225)
Q Consensus       127 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~  206 (225)
                      |+.+++.+|.+...  ..+.. +++++.+++++|.+++.  . .+..+++|+++++++|++.   .++ .++. +++|+.
T Consensus       114 L~~L~l~~~~~~~~--~~l~~-l~~l~~l~~~~n~l~~~--~-~~~~l~~L~~l~l~~n~l~---~i~-~l~~-l~~L~~  182 (210)
T d1h6ta2         114 LKSLSLEHNGISDI--NGLVH-LPQLESLYLGNNKITDI--T-VLSRLTKLDTLSLEDNQIS---DIV-PLAG-LTKLQN  182 (210)
T ss_dssp             CCEEECTTSCCCCC--GGGGG-CTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCC---CCG-GGTT-CTTCCE
T ss_pred             cccccccccccccc--ccccc-ccccccccccccccccc--c-ccccccccccccccccccc---ccc-cccC-CCCCCE
Confidence            99999999987632  34566 89999999999998743  2 4677899999999999663   233 3777 999999


Q ss_pred             EEccCCcCCCc
Q 045865          207 LLLSYSTLGTN  217 (225)
Q Consensus       207 L~l~~n~l~~~  217 (225)
                      |++++|+|++.
T Consensus       183 L~Ls~N~i~~l  193 (210)
T d1h6ta2         183 LYLSKNHISDL  193 (210)
T ss_dssp             EECCSSCCCBC
T ss_pred             EECCCCCCCCC
Confidence            99999999853

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.9e-16  Score=116.67  Aligned_cols=189  Identities=15%  Similarity=0.173  Sum_probs=130.0

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECC-CCCCChhhHHhhhc
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLS-GNSFNNSILSSLTH   98 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~-~~~l~~~~~~~l~~   98 (225)
                      ..+++|++++|.+.    .++...|.++++|++|++++|.+....+..   .|..++.++++.+. .+.+....+..+..
T Consensus        29 ~~l~~L~Ls~n~i~----~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~---~f~~l~~l~~l~~~~~n~l~~~~~~~~~~  101 (242)
T d1xwdc1          29 RNAIELRFVLTKLR----VIQKGAFSGFGDLEKIEISQNDVLEVIEAD---VFSNLPKLHEIRIEKANNLLYINPEAFQN  101 (242)
T ss_dssp             SCCSEEEEESCCCC----EECTTTTTTCTTCCEEEEESCTTCCEECSS---SEESCTTCCEEEEECCTTCCEECTTSEEC
T ss_pred             CCCCEEECcCCcCC----ccChhHhhccchhhhhhhccccccceeecc---ccccccccccccccccccccccccccccc
Confidence            46899999999997    677888999999999999999887654443   47789999999875 46777767788889


Q ss_pred             CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhC-CCCCEEeccccccccccccCCCCCCCCC
Q 045865           99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIF-PSLKNLSMSFCEVNGVVRGQGFPHFKSL  177 (225)
Q Consensus        99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~L  177 (225)
                      +++|+++++.++.+....+......+..+..+....+.+.......+.. + ..+..+++.+|.++ .++...+. ..++
T Consensus       102 l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~-~~~~l~~L~l~~n~l~-~i~~~~~~-~~~l  178 (242)
T d1xwdc1         102 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG-LSFESVILWLNKNGIQ-EIHNCAFN-GTQL  178 (242)
T ss_dssp             CTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTT-SBSSCEEEECCSSCCC-EECTTTTT-TCCE
T ss_pred             cccccccccchhhhccccccccccccccccccccccccccccccccccc-ccccceeeeccccccc-cccccccc-chhh
Confidence            9999999999998863322213334455555555555554322233333 3 36778888888887 44442443 3444


Q ss_pred             cEE-EccCCccccchhHHH-HHhhcCCCCcEEEccCCcCCCccchhh
Q 045865          178 EHF-DMRFARIALNTSFLQ-IIGESMPSLKYLLLSYSTLGTNSSRIL  222 (225)
Q Consensus       178 ~~l-~l~~n~i~~~~~~~~-~l~~~~~~L~~L~l~~n~l~~~~~~~~  222 (225)
                      ..+ ++.+|++   ..++. .+.. +++|+.|++++|+|+...+..|
T Consensus       179 ~~~~~l~~n~l---~~l~~~~f~~-l~~L~~L~Ls~N~l~~l~~~~~  221 (242)
T d1xwdc1         179 DELNLSDNNNL---EELPNDVFHG-ASGPVILDISRTRIHSLPSYGL  221 (242)
T ss_dssp             EEEECTTCTTC---CCCCTTTTTT-SCCCSEEECTTSCCCCCCSSSC
T ss_pred             hcccccccccc---ccccHHHhcC-CCCCCEEECCCCcCCccCHHHH
Confidence            444 4566655   23333 3555 8899999999999885544443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=1.2e-14  Score=107.61  Aligned_cols=166  Identities=20%  Similarity=0.328  Sum_probs=132.0

Q ss_pred             CcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhh
Q 045865           18 TTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT   97 (225)
Q Consensus        18 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~   97 (225)
                      ...+++.|++++|.+.    .+.+  +..++.++.+++++|.+.. .+.     +..+++|+.+.++++.....  ..+.
T Consensus        61 ~l~~L~~L~ls~n~i~----~~~~--l~~l~~l~~l~~~~n~~~~-i~~-----l~~l~~L~~l~l~~~~~~~~--~~~~  126 (227)
T d1h6ua2          61 YLNNLIGLELKDNQIT----DLAP--LKNLTKITELELSGNPLKN-VSA-----IAGLQSIKTLDLTSTQITDV--TPLA  126 (227)
T ss_dssp             GCTTCCEEECCSSCCC----CCGG--GTTCCSCCEEECCSCCCSC-CGG-----GTTCTTCCEEECTTSCCCCC--GGGT
T ss_pred             cCCCCcEeecCCceee----cccc--ccccccccccccccccccc-ccc-----cccccccccccccccccccc--chhc
Confidence            3568999999999987    3333  7889999999999998875 443     78899999999999987653  3466


Q ss_pred             cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCC
Q 045865           98 HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSL  177 (225)
Q Consensus        98 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L  177 (225)
                      ..+.++.+.+..+.+. ...  .+...++|+.+++.+|.+.+..  .+.. +++|+.|++++|.+++ ++  .+.++++|
T Consensus       127 ~~~~~~~l~~~~~~~~-~~~--~~~~~~~L~~L~l~~n~~~~~~--~l~~-l~~L~~L~Ls~n~l~~-l~--~l~~l~~L  197 (227)
T d1h6ua2         127 GLSNLQVLYLDLNQIT-NIS--PLAGLTNLQYLSIGNAQVSDLT--PLAN-LSKLTTLKADDNKISD-IS--PLASLPNL  197 (227)
T ss_dssp             TCTTCCEEECCSSCCC-CCG--GGGGCTTCCEEECCSSCCCCCG--GGTT-CTTCCEEECCSSCCCC-CG--GGGGCTTC
T ss_pred             cccchhhhhchhhhhc-hhh--hhccccccccccccccccccch--hhcc-cccceecccCCCccCC-Ch--hhcCCCCC
Confidence            7889999999988876 332  5677889999999999876432  2556 9999999999999874 33  37889999


Q ss_pred             cEEEccCCccccchhHHHHHhhcCCCCcEEEccC
Q 045865          178 EHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY  211 (225)
Q Consensus       178 ~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~  211 (225)
                      ++|++++|++.   .++ .++. +++|+.|++++
T Consensus       198 ~~L~Ls~N~lt---~i~-~l~~-l~~L~~L~lsn  226 (227)
T d1h6ua2         198 IEVHLKNNQIS---DVS-PLAN-TSNLFIVTLTN  226 (227)
T ss_dssp             CEEECTTSCCC---BCG-GGTT-CTTCCEEEEEE
T ss_pred             CEEECcCCcCC---CCc-cccc-CCCCCEEEeeC
Confidence            99999999763   333 3777 99999999863

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.58  E-value=3e-14  Score=111.72  Aligned_cols=202  Identities=16%  Similarity=0.136  Sum_probs=130.3

Q ss_pred             cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcc---hh---hHHHHHhcCCCCCEEECCCCCCChh-
Q 045865           19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCV---EN---EGIERLSRLNNLKMLNLSGNSFNNS-   91 (225)
Q Consensus        19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~---~~---~~~~~~~~l~~L~~L~l~~~~l~~~-   91 (225)
                      ...+++|++++|.+...++......+...+.|+.++++++......   +.   ..++.+..+++|++|++++|.+... 
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            4578899999999887666777778888899999999877544321   11   1244567788999999999988653 


Q ss_pred             ---hHHhhhcCCCCCEEEcCCCCCCCccch---h---------hhccCCCCceeecCCCCCcHH----HHHHHHhhCCCC
Q 045865           92 ---ILSSLTHLSSLRSLNLLWNRLEGSIDV---K---------ELHNFTNLEYLTLESSSLHIS----LLQSIASIFPSL  152 (225)
Q Consensus        92 ---~~~~l~~l~~L~~L~l~~n~~~~~~~~---~---------~~~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~~L  152 (225)
                         +...+...++|++|++++|.+......   .         .....+.|+.+.+++|.+...    +...+.. ++.|
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~-~~~L  188 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS-HRLL  188 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH-CTTC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhh-hhhh
Confidence               344556778899999998876421100   0         012345677777777766532    2334445 6777


Q ss_pred             CEEecccccccccc----ccCCCCCCCCCcEEEccCCccccc--hhHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865          153 KNLSMSFCEVNGVV----RGQGFPHFKSLEHFDMRFARIALN--TSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL  222 (225)
Q Consensus       153 ~~L~l~~n~~~~~~----~~~~~~~~~~L~~l~l~~n~i~~~--~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~  222 (225)
                      +.|++++|.+....    ....+..+++|+.|++++|.+...  ..+...+.. +++|+.|++++|.|++.....+
T Consensus       189 ~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~-~~~L~~L~Ls~n~i~~~g~~~l  263 (344)
T d2ca6a1         189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS-WPNLRELGLNDCLLSARGAAAV  263 (344)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG-CTTCCEEECTTCCCCHHHHHHH
T ss_pred             cccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccc-cccchhhhhhcCccCchhhHHH
Confidence            77777777765321    112456667777777777754222  124455566 7777777777777776544443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.57  E-value=2.5e-15  Score=108.51  Aligned_cols=130  Identities=18%  Similarity=0.236  Sum_probs=107.2

Q ss_pred             ccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCCh-hhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCc
Q 045865           50 LESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNN-SILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLE  128 (225)
Q Consensus        50 L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  128 (225)
                      .++++.+++++.. +|.    .+  .+++++|++++|.++. ..+..|..+++|++|++++|.+. .++...+..+++|+
T Consensus        10 ~~~v~Cs~~~L~~-iP~----~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~L~   81 (192)
T d1w8aa_          10 GTTVDCTGRGLKE-IPR----DI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQ   81 (192)
T ss_dssp             TTEEECTTSCCSS-CCS----CC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCC
T ss_pred             CCEEEEeCCCcCc-cCC----CC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc-cccccccccccccc
Confidence            4578889988876 565    23  3689999999999975 44667788999999999999998 55555888999999


Q ss_pred             eeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCcccc
Q 045865          129 YLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIAL  189 (225)
Q Consensus       129 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~  189 (225)
                      .|++++|++....+..+.. +++|+.|++++|.++...+. .|..+++|+++++++|.+..
T Consensus        82 ~L~Ls~N~l~~l~~~~F~~-l~~L~~L~L~~N~l~~i~~~-~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          82 ELQLGENKIKEISNKMFLG-LHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             EEECCSCCCCEECSSSSTT-CTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCBCC
T ss_pred             eeeeccccccccCHHHHhC-CCcccccccCCccccccCHH-HhcCCccccccccccccccc
Confidence            9999999998655556666 99999999999999854444 89999999999999997643

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.57  E-value=3.9e-14  Score=111.09  Aligned_cols=197  Identities=16%  Similarity=0.228  Sum_probs=131.0

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHH---------HhcCCCCCEEECCCCCCCh
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIER---------LSRLNNLKMLNLSGNSFNN   90 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~---------~~~l~~L~~L~l~~~~l~~   90 (225)
                      .+++.|++++|.+....+......+...++|+.|++++|.+...........         ....+.|+.+.++++.+..
T Consensus        93 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~  172 (344)
T d2ca6a1          93 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  172 (344)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccc
Confidence            4677788888877654444455566667788888888777643221111111         2346778888888887753


Q ss_pred             h----hHHhhhcCCCCCEEEcCCCCCCCcc----chhhhccCCCCceeecCCCCCcHHH----HHHHHhhCCCCCEEecc
Q 045865           91 S----ILSSLTHLSSLRSLNLLWNRLEGSI----DVKELHNFTNLEYLTLESSSLHISL----LQSIASIFPSLKNLSMS  158 (225)
Q Consensus        91 ~----~~~~l~~l~~L~~L~l~~n~~~~~~----~~~~~~~l~~L~~l~l~~~~~~~~~----~~~~~~~~~~L~~L~l~  158 (225)
                      .    +...+..++.++.+++++|.+....    ....+...++|+.|++++|.+....    ...+.. +++|++|+++
T Consensus       173 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~-~~~L~~L~Ls  251 (344)
T d2ca6a1         173 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS-WPNLRELGLN  251 (344)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG-CTTCCEEECT
T ss_pred             cccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccc-cccchhhhhh
Confidence            2    3344566788999999999876321    1124566788999999999886543    344455 8899999999


Q ss_pred             cccccccccc---CCCC--CCCCCcEEEccCCccccch--hHHHHHh-hcCCCCcEEEccCCcCCCcc
Q 045865          159 FCEVNGVVRG---QGFP--HFKSLEHFDMRFARIALNT--SFLQIIG-ESMPSLKYLLLSYSTLGTNS  218 (225)
Q Consensus       159 ~n~~~~~~~~---~~~~--~~~~L~~l~l~~n~i~~~~--~~~~~l~-~~~~~L~~L~l~~n~l~~~~  218 (225)
                      +|.+++....   ..+.  ....|+.|++++|+|...+  .+...+. + ++.|+.|++++|+++.+.
T Consensus       252 ~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~-~~~L~~L~l~~N~~~~~~  318 (344)
T d2ca6a1         252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK-MPDLLFLELNGNRFSEED  318 (344)
T ss_dssp             TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHH-CTTCCEEECTTSBSCTTS
T ss_pred             cCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHcc-CCCCCEEECCCCcCCCcc
Confidence            9988743222   0222  3467999999999663322  3455554 5 889999999999997643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6.7e-15  Score=103.24  Aligned_cols=126  Identities=14%  Similarity=0.152  Sum_probs=57.5

Q ss_pred             CCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEe
Q 045865           77 NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLS  156 (225)
Q Consensus        77 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~  156 (225)
                      .+++|++++|.++.. +..+..+++|++|++++|.+. .++  .+..+++|+.|++++|.+....+..+.. +++|+.|+
T Consensus        19 ~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~-~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~-l~~L~~L~   93 (162)
T d1a9na_          19 RDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIR-KLD--GFPLLRRLKTLLVNNNRICRIGEGLDQA-LPDLTELI   93 (162)
T ss_dssp             SCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCC-EEC--CCCCCSSCCEEECCSSCCCEECSCHHHH-CTTCCEEE
T ss_pred             cCcEEECCCCCCCcc-CccccccccCCEEECCCCCCC-ccC--CcccCcchhhhhcccccccCCCcccccc-ccccccce
Confidence            344444444444332 222233444444444444443 222  3444445555555555544222222233 56666666


Q ss_pred             ccccccccccccCCCCCCCCCcEEEccCCccccchhH-HHHHhhcCCCCcEEE
Q 045865          157 MSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSF-LQIIGESMPSLKYLL  208 (225)
Q Consensus       157 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~-~~~l~~~~~~L~~L~  208 (225)
                      +++|.+........+..+++|+.+++++|++.....+ +..++. +++|+.||
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~-lp~L~~LD  145 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYK-VPQVRVLD  145 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHH-CTTCSEET
T ss_pred             eccccccccccccccccccccchhhcCCCccccccchHHHHHHH-CCCcCeeC
Confidence            6666554321112455566666666666644222211 233555 77777665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.3e-14  Score=100.44  Aligned_cols=109  Identities=26%  Similarity=0.229  Sum_probs=46.4

Q ss_pred             CCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCC
Q 045865           46 PFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFT  125 (225)
Q Consensus        46 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  125 (225)
                      +...+++|++++|.|... +.    .+..+++|+.|++++|.+...  +.+..+++|++|++++|.+. .++...+..++
T Consensus        16 n~~~lr~L~L~~n~I~~i-~~----~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~   87 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVI-EN----LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALP   87 (162)
T ss_dssp             CTTSCEEEECTTSCCCSC-CC----GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCT
T ss_pred             CcCcCcEEECCCCCCCcc-Cc----cccccccCCEEECCCCCCCcc--CCcccCcchhhhhccccccc-CCCcccccccc
Confidence            333444444444444432 22    123344445555555444432  22344444555555555443 33322233444


Q ss_pred             CCceeecCCCCCcHHH-HHHHHhhCCCCCEEeccccccc
Q 045865          126 NLEYLTLESSSLHISL-LQSIASIFPSLKNLSMSFCEVN  163 (225)
Q Consensus       126 ~L~~l~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~  163 (225)
                      +|+.|++.+|.+.... ...+.. +++|+.+++++|+++
T Consensus        88 ~L~~L~L~~N~i~~~~~l~~l~~-l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          88 DLTELILTNNSLVELGDLDPLAS-LKSLTYLCILRNPVT  125 (162)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGG-CTTCCEEECCSSGGG
T ss_pred             ccccceecccccccccccccccc-ccccchhhcCCCccc
Confidence            4555555554443211 122333 455555555555443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.4e-14  Score=108.61  Aligned_cols=172  Identities=19%  Similarity=0.164  Sum_probs=125.9

Q ss_pred             CCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCC-CCCccchhhhccCC
Q 045865           47 FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNR-LEGSIDVKELHNFT  125 (225)
Q Consensus        47 l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~  125 (225)
                      ...|++|+++++.+......   ..+..+++|++|+++++.+++..+..+..+++|++|+++++. +++..-......++
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~---~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLH---GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHH---HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             CCCCCEEECCCCccCHHHHH---HHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHH
Confidence            45789999999887543222   246789999999999999988888889999999999999964 44221111345688


Q ss_pred             CCceeecCCC-CCcHHH-HHHHHhhCCCCCEEecccc--ccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcC
Q 045865          126 NLEYLTLESS-SLHISL-LQSIASIFPSLKNLSMSFC--EVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESM  201 (225)
Q Consensus       126 ~L~~l~l~~~-~~~~~~-~~~~~~~~~~L~~L~l~~n--~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~  201 (225)
                      +|+.|+++++ .+++.. ...+...+++|+.|+++++  .+++......+.++++|++|++++|. ..++..+..+++ +
T Consensus       122 ~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~-~itd~~~~~l~~-~  199 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV-MLKNDCFQEFFQ-L  199 (284)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT-TCCGGGGGGGGG-C
T ss_pred             hccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccccccc-CCCchhhhhhcc-c
Confidence            9999999986 455443 3445553578999999876  34433222244678999999999874 345566777888 9


Q ss_pred             CCCcEEEccCC-cCCCccchhhc
Q 045865          202 PSLKYLLLSYS-TLGTNSSRILH  223 (225)
Q Consensus       202 ~~L~~L~l~~n-~l~~~~~~~~~  223 (225)
                      ++|+.|++++| .+++.....++
T Consensus       200 ~~L~~L~L~~C~~i~~~~l~~L~  222 (284)
T d2astb2         200 NYLQHLSLSRCYDIIPETLLELG  222 (284)
T ss_dssp             TTCCEEECTTCTTCCGGGGGGGG
T ss_pred             CcCCEEECCCCCCCChHHHHHHh
Confidence            99999999996 78876665554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=1.5e-14  Score=96.77  Aligned_cols=106  Identities=19%  Similarity=0.249  Sum_probs=45.5

Q ss_pred             hcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCC
Q 045865           97 THLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKS  176 (225)
Q Consensus        97 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  176 (225)
                      ..++.|++|++++|.+. .+|. .+..+++|+.|++++|.+... + .+.. +++|+.|++++|.++.......+..+++
T Consensus        17 ~~l~~L~~L~ls~N~l~-~lp~-~~~~l~~L~~L~l~~N~i~~l-~-~~~~-l~~L~~L~l~~N~i~~~~~~~~l~~~~~   91 (124)
T d1dcea3          17 EQLLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDNALENV-D-GVAN-LPRLQELLLCNNRLQQSAAIQPLVSCPR   91 (124)
T ss_dssp             GGGTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCCCC-G-GGTT-CSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred             ccCCCCCEEECCCCccC-cchh-hhhhhhccccccccccccccc-C-cccc-ccccCeEECCCCccCCCCCchhhcCCCC
Confidence            33444444444444443 3332 344444444444444444321 1 2333 5555555555555542211113445555


Q ss_pred             CcEEEccCCccccchhHHHHHhhcCCCCcEE
Q 045865          177 LEHFDMRFARIALNTSFLQIIGESMPSLKYL  207 (225)
Q Consensus       177 L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L  207 (225)
                      |+.+++++|++.....++..+...+|+|+.|
T Consensus        92 L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          92 LVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            6666666654422222222222225666554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=9.3e-14  Score=92.88  Aligned_cols=120  Identities=26%  Similarity=0.357  Sum_probs=76.4

Q ss_pred             EEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCC
Q 045865           23 IALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL  102 (225)
Q Consensus        23 ~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L  102 (225)
                      +.|++++|++.    .++  .+..+++|++|++++|.+.. .|+    .+..+++|+.|++++|.++.. + .+..+++|
T Consensus         1 R~L~Ls~n~l~----~l~--~l~~l~~L~~L~ls~N~l~~-lp~----~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L   67 (124)
T d1dcea3           1 RVLHLAHKDLT----VLC--HLEQLLLVTHLDLSHNRLRA-LPP----ALAALRCLEVLQASDNALENV-D-GVANLPRL   67 (124)
T ss_dssp             SEEECTTSCCS----SCC--CGGGGTTCCEEECCSSCCCC-CCG----GGGGCTTCCEEECCSSCCCCC-G-GGTTCSSC
T ss_pred             CEEEcCCCCCC----CCc--ccccCCCCCEEECCCCccCc-chh----hhhhhhccccccccccccccc-C-cccccccc
Confidence            35777777776    332  25677778888888887765 454    467778888888888877653 2 46677778


Q ss_pred             CEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHH--HHHHHHhhCCCCCEE
Q 045865          103 RSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHIS--LLQSIASIFPSLKNL  155 (225)
Q Consensus       103 ~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~L~~L  155 (225)
                      +++++++|.+........+..+++|+.+++.+|.+...  .+..+...+|+|+.+
T Consensus        68 ~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          68 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            88888887776222223566677777777777766421  122222226666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.1e-13  Score=108.89  Aligned_cols=94  Identities=19%  Similarity=0.146  Sum_probs=69.0

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHh-cCCCCCEEECCCCCCChh----hHH
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLS-RLNNLKMLNLSGNSFNNS----ILS   94 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~~----~~~   94 (225)
                      .+++.|+|++|.+...+.+..+..+..+++|++|++++|.|.........+.+. ..++|++|++++|.++..    ++.
T Consensus        27 ~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~  106 (460)
T d1z7xw1          27 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS  106 (460)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccc
Confidence            467889999998876555666777888999999999999885422222122222 235799999999999753    455


Q ss_pred             hhhcCCCCCEEEcCCCCCC
Q 045865           95 SLTHLSSLRSLNLLWNRLE  113 (225)
Q Consensus        95 ~l~~l~~L~~L~l~~n~~~  113 (225)
                      .+..+++|++|++++|.+.
T Consensus       107 ~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         107 TLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HTTSCTTCCEEECCSSBCH
T ss_pred             hhhccccccccccccccch
Confidence            6777899999999998764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.29  E-value=1e-13  Score=100.30  Aligned_cols=135  Identities=23%  Similarity=0.215  Sum_probs=88.4

Q ss_pred             HHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCC
Q 045865           71 RLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFP  150 (225)
Q Consensus        71 ~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~  150 (225)
                      .+..+++|++|++++|.++..  ..+..+++|+.|++++|.+. .++. ....+++|+.|++.+|.+...  ..+.. ++
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~-~i~~-~~~~~~~L~~L~l~~N~i~~l--~~~~~-l~  115 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KIEN-LDAVADTLEELWISYNQIASL--SGIEK-LV  115 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEEC-SCSS-HHHHHHHCCEEECSEEECCCH--HHHHH-HH
T ss_pred             HHhcccccceeECcccCCCCc--ccccCCccccChhhcccccc-cccc-ccccccccccccccccccccc--ccccc-cc
Confidence            467778888888888777653  24667778888888888776 4443 334455688888888877642  33555 77


Q ss_pred             CCCEEeccccccccccccCCCCCCCCCcEEEccCCccccch----hH----HHHHhhcCCCCcEEEccCCcCC
Q 045865          151 SLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNT----SF----LQIIGESMPSLKYLLLSYSTLG  215 (225)
Q Consensus       151 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~----~~----~~~l~~~~~~L~~L~l~~n~l~  215 (225)
                      +|+.|++++|.++.......+..+++|+.|++++|++....    ..    ...+.. +|+|+.||  +..++
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~-lp~L~~LD--~~~I~  185 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR-LPNLKKLD--GMPVD  185 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHH-CSSCCEES--SGGGT
T ss_pred             cccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHH-CCCcCEeC--CccCC
Confidence            88888888888764322125677888888888888542110    01    123566 89998875  55554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.26  E-value=4.4e-14  Score=102.27  Aligned_cols=129  Identities=19%  Similarity=0.311  Sum_probs=100.4

Q ss_pred             hhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhh
Q 045865           42 SLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKEL  121 (225)
Q Consensus        42 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  121 (225)
                      ..+..+++|++|++++|.|.. ++.     +..+++|+.|++++|.+.. ++.....++.|++|++.+|.+. .++  .+
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~-i~~-----l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~-~l~--~~  111 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEK-ISS-----LSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIA-SLS--GI  111 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESC-CCC-----HHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECC-CHH--HH
T ss_pred             hHHhcccccceeECcccCCCC-ccc-----ccCCccccChhhccccccc-cccccccccccccccccccccc-ccc--cc
Confidence            356789999999999999986 443     7889999999999998875 3444445568999999999987 543  57


Q ss_pred             ccCCCCceeecCCCCCcHHH-HHHHHhhCCCCCEEeccccccccccccC---------CCCCCCCCcEEE
Q 045865          122 HNFTNLEYLTLESSSLHISL-LQSIASIFPSLKNLSMSFCEVNGVVRGQ---------GFPHFKSLEHFD  181 (225)
Q Consensus       122 ~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~---------~~~~~~~L~~l~  181 (225)
                      ..+++|+.|++++|.+.... ...+.. +++|+.|++++|++....+..         .+..+++|+.||
T Consensus       112 ~~l~~L~~L~L~~N~i~~~~~~~~l~~-l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         112 EKLVNLRVLYMSNNKITNWGEIDKLAA-LDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHSSEEEESEEECCCHHHHHHHTT-TTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccccccchhccccccccccC-CCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            78889999999999987432 245666 999999999999886433321         145688899887

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3e-11  Score=97.06  Aligned_cols=203  Identities=17%  Similarity=0.099  Sum_probs=117.4

Q ss_pred             CceEEeeccccccccc-hhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhh--
Q 045865           20 GRVIALDLSYIYSGEY-SWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL--   96 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l--   96 (225)
                      ...+.+++.++.+... ..............++.+++++|.+........+..+...+.++.+++++|.+.......+  
T Consensus       226 ~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~  305 (460)
T d1z7xw1         226 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE  305 (460)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             ccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhc
Confidence            3456677776655431 1123334445566777888887777643333333455667788888888887754333222  


Q ss_pred             --h-cCCCCCEEEcCCCCCCCccch---hhhccCCCCceeecCCCCCcHHHHH----HHHhhCCCCCEEecccccccccc
Q 045865           97 --T-HLSSLRSLNLLWNRLEGSIDV---KELHNFTNLEYLTLESSSLHISLLQ----SIASIFPSLKNLSMSFCEVNGVV  166 (225)
Q Consensus        97 --~-~l~~L~~L~l~~n~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~~  166 (225)
                        . ....|+.++++.+.+......   ..+....+|+.|++++|.+.+....    .+....+.|+.|++++|.+++..
T Consensus       306 ~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~  385 (460)
T d1z7xw1         306 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS  385 (460)
T ss_dssp             HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred             cccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHH
Confidence              1 235688888888776532111   1233445788888888877654332    33222456888888888776431


Q ss_pred             cc---CCCCCCCCCcEEEccCCccccch--hHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865          167 RG---QGFPHFKSLEHFDMRFARIALNT--SFLQIIGESMPSLKYLLLSYSTLGTNSSRIL  222 (225)
Q Consensus       167 ~~---~~~~~~~~L~~l~l~~n~i~~~~--~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~  222 (225)
                      ..   ..+..+++|++|++++|+|...+  .+.+.+.+....|+.|++.++.+.....+.+
T Consensus       386 ~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l  446 (460)
T d1z7xw1         386 CSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL  446 (460)
T ss_dssp             HHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHH
Confidence            11   13455677888888888553321  2223333313368888888888776555443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.8e-12  Score=96.35  Aligned_cols=183  Identities=13%  Similarity=0.111  Sum_probs=121.9

Q ss_pred             EeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChh-hHHhhhcCCCC
Q 045865           24 ALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNS-ILSSLTHLSSL  102 (225)
Q Consensus        24 ~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~l~~l~~L  102 (225)
                      .++.++..+.    ++++..+   +.+++|++++|.|....+.    .|.++++|++|++++|.+... .+..+..++.+
T Consensus        12 ~i~c~~~~l~----~iP~~l~---~~l~~L~Ls~n~i~~l~~~----~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l   80 (242)
T d1xwdc1          12 VFLCQESKVT----EIPSDLP---RNAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL   80 (242)
T ss_dssp             EEEEESCSCS----SCCSCSC---SCCSEEEEESCCCCEECTT----TTTTCTTCCEEEEESCTTCCEECSSSEESCTTC
T ss_pred             EEEEeCCCCC----CcCCCCC---CCCCEEECcCCcCCccChh----Hhhccchhhhhhhccccccceeecccccccccc
Confidence            4555555555    4444332   4688999999999874444    588999999999999988653 34567889999


Q ss_pred             CEEEcCC-CCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCC-CCcEE
Q 045865          103 RSLNLLW-NRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFK-SLEHF  180 (225)
Q Consensus       103 ~~L~l~~-n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~L~~l  180 (225)
                      +++.+.. +.+. ..+...+..+++|+.+++.++.+....+......+..+..+....+.+. .++...+..++ .+..+
T Consensus        81 ~~l~~~~~n~l~-~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~-~i~~~~~~~~~~~l~~L  158 (242)
T d1xwdc1          81 HEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVIL  158 (242)
T ss_dssp             CEEEEECCTTCC-EECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEE
T ss_pred             cccccccccccc-ccccccccccccccccccchhhhcccccccccccccccccccccccccc-cccccccccccccceee
Confidence            9999865 4555 5555478899999999999998763322111111444555555555665 33333666654 78999


Q ss_pred             EccCCccccchhHHHHHhhcCCCCcEE-EccCCcCCCccchhhc
Q 045865          181 DMRFARIALNTSFLQIIGESMPSLKYL-LLSYSTLGTNSSRILH  223 (225)
Q Consensus       181 ~l~~n~i~~~~~~~~~l~~~~~~L~~L-~l~~n~l~~~~~~~~~  223 (225)
                      ++++|++.   .++..... ..+++.+ .+.+|.++...+..|.
T Consensus       159 ~l~~n~l~---~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~  198 (242)
T d1xwdc1         159 WLNKNGIQ---EIHNCAFN-GTQLDELNLSDNNNLEELPNDVFH  198 (242)
T ss_dssp             ECCSSCCC---EECTTTTT-TCCEEEEECTTCTTCCCCCTTTTT
T ss_pred             eccccccc---cccccccc-chhhhccccccccccccccHHHhc
Confidence            99999662   33333344 5566555 5688889865555443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.9e-10  Score=79.58  Aligned_cols=104  Identities=20%  Similarity=0.194  Sum_probs=81.4

Q ss_pred             EeeccccccccchhHHhhhhhcCCCCccEEEccCCc-ccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCC
Q 045865           24 ALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNK-IAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL  102 (225)
Q Consensus        24 ~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L  102 (225)
                      +++.+++++.    .. +..+..+++|++|++.+++ +....+.    .|..+++|+.|++++|.+....+..|..+++|
T Consensus        12 ~l~c~~~~~~----~~-p~~l~~l~~l~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L   82 (156)
T d2ifga3          12 GLRCTRDGAL----DS-LHHLPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL   82 (156)
T ss_dssp             CEECCSSCCC----TT-TTTSCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEECTTGGGSCSCC
T ss_pred             eEEecCCCCc----cC-cccccCccccCeeecCCCccccccCch----hhccccccCcceeeccccCCcccccccccccc
Confidence            4555666554    22 2346778899999997664 7764444    68899999999999999998888889999999


Q ss_pred             CEEEcCCCCCCCccchhhhccCCCCceeecCCCCCc
Q 045865          103 RSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLH  138 (225)
Q Consensus       103 ~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~  138 (225)
                      ++|++++|.+. .++...+. ..+|+.|++.+|.+.
T Consensus        83 ~~L~Ls~N~l~-~l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          83 SRLNLSFNALE-SLSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             CEEECCSSCCS-CCCSTTTC-SCCCCEEECCSSCCC
T ss_pred             cceeccCCCCc-ccChhhhc-cccccccccCCCccc
Confidence            99999999998 77764554 447999999999874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.09  E-value=1.2e-10  Score=90.54  Aligned_cols=75  Identities=27%  Similarity=0.207  Sum_probs=44.7

Q ss_pred             CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcC-CCCCEEECCCCCCChhhHHhhhc
Q 045865           20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRL-NNLKMLNLSGNSFNNSILSSLTH   98 (225)
Q Consensus        20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~~~~~~~l~~   98 (225)
                      +++++|++++|++.    .++.    .+.+|+.|++.+|.+..         +..+ +.|++|++++|.+... | .+..
T Consensus        58 ~~L~~L~Ls~N~l~----~lp~----~~~~L~~L~l~~n~l~~---------l~~lp~~L~~L~L~~n~l~~l-p-~~~~  118 (353)
T d1jl5a_          58 PHLESLVASCNSLT----ELPE----LPQSLKSLLVDNNNLKA---------LSDLPPLLEYLGVSNNQLEKL-P-ELQN  118 (353)
T ss_dssp             TTCSEEECCSSCCS----SCCC----CCTTCCEEECCSSCCSC---------CCSCCTTCCEEECCSSCCSSC-C-CCTT
T ss_pred             CCCCEEECCCCCCc----cccc----chhhhhhhhhhhcccch---------hhhhccccccccccccccccc-c-chhh
Confidence            35566666666554    3322    13455666666665543         1222 3578888888877653 3 2456


Q ss_pred             CCCCCEEEcCCCCCC
Q 045865           99 LSSLRSLNLLWNRLE  113 (225)
Q Consensus        99 l~~L~~L~l~~n~~~  113 (225)
                      ++.|+.+++.++.+.
T Consensus       119 l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         119 SSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CTTCCEEECCSSCCS
T ss_pred             hccceeecccccccc
Confidence            788888888777654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.1e-10  Score=80.77  Aligned_cols=89  Identities=19%  Similarity=0.292  Sum_probs=44.7

Q ss_pred             hhhcCCCCCEEEcCCCC-CCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCC
Q 045865           95 SLTHLSSLRSLNLLWNR-LEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPH  173 (225)
Q Consensus        95 ~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  173 (225)
                      .+..+++|++|++.++. +. .++...|..+++|+.|++++|++....+..+.. +++|+.|++++|.++ .++...+..
T Consensus        26 ~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~-l~~L~~L~Ls~N~l~-~l~~~~~~~  102 (156)
T d2ifga3          26 HLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF-TPRLSRLNLSFNALE-SLSWKTVQG  102 (156)
T ss_dssp             TSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGS-CSCCCEEECCSSCCS-CCCSTTTCS
T ss_pred             cccCccccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCcccccccc-cccccceeccCCCCc-ccChhhhcc
Confidence            33444455555554332 33 343334555555555555555554333333444 566666666666665 333323433


Q ss_pred             CCCCcEEEccCCcc
Q 045865          174 FKSLEHFDMRFARI  187 (225)
Q Consensus       174 ~~~L~~l~l~~n~i  187 (225)
                      . +|+.|++++|++
T Consensus       103 ~-~l~~L~L~~Np~  115 (156)
T d2ifga3         103 L-SLQELVLSGNPL  115 (156)
T ss_dssp             C-CCCEEECCSSCC
T ss_pred             c-cccccccCCCcc
Confidence            3 466667766654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.63  E-value=1.7e-07  Score=64.97  Aligned_cols=116  Identities=15%  Similarity=0.191  Sum_probs=53.9

Q ss_pred             cCCCCccEEEccCC-cccCcchhhHHHHHhcCCCCCEEECCCCCCChh----hHHhhhcCCCCCEEEcCCCCCCCccch-
Q 045865           45 TPFQQLESLDLTQN-KIAGCVENEGIERLSRLNNLKMLNLSGNSFNNS----ILSSLTHLSSLRSLNLLWNRLEGSIDV-  118 (225)
Q Consensus        45 ~~l~~L~~L~l~~n-~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~-  118 (225)
                      .+.+.|++|+++++ .+....-...+..+...++|++|++++|.+...    +...+...+.|++|++++|.+.+.-.. 
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34455555555542 343322222333444555555555555555421    223333445555555555555421110 


Q ss_pred             --hhhccCCCCceeecCCCCCc---H----HHHHHHHhhCCCCCEEeccccc
Q 045865          119 --KELHNFTNLEYLTLESSSLH---I----SLLQSIASIFPSLKNLSMSFCE  161 (225)
Q Consensus       119 --~~~~~l~~L~~l~l~~~~~~---~----~~~~~~~~~~~~L~~L~l~~n~  161 (225)
                        ..+...++|+.|++.+|.+.   .    .+...+.. .+.|+.|+++.+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~-n~sL~~l~l~~~~  142 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEE-NESLLRVGISFAS  142 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHH-CSSCCEEECCCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHh-CCCccEeeCcCCC
Confidence              12334455666666555322   1    13344444 5667777665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.61  E-value=3.4e-07  Score=63.43  Aligned_cols=116  Identities=13%  Similarity=0.119  Sum_probs=59.9

Q ss_pred             CceEEeecccc-ccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhh----HH
Q 045865           20 GRVIALDLSYI-YSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSI----LS   94 (225)
Q Consensus        20 ~~v~~l~l~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~----~~   94 (225)
                      +.+++|+++++ .+...++......+...+.|++|++++|.+.........+.+...+.|++|++++|.+....    ..
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            45666666653 35444334444555556666666666666554333333334555666666666666665422    23


Q ss_pred             hhhcCCCCCEEEcCCCCCCCccc-------hhhhccCCCCceeecCCCC
Q 045865           95 SLTHLSSLRSLNLLWNRLEGSID-------VKELHNFTNLEYLTLESSS  136 (225)
Q Consensus        95 ~l~~l~~L~~L~l~~n~~~~~~~-------~~~~~~l~~L~~l~l~~~~  136 (225)
                      .+...+.|++|++.+|... .+.       ...+...++|+.+++..+.
T Consensus        95 aL~~n~sL~~L~l~~n~~~-~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQS-VLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSC-CCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHhCCcCCEEECCCCcCC-CccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            3444556666666665443 111       0123334556666665543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.49  E-value=3.2e-07  Score=70.58  Aligned_cols=135  Identities=21%  Similarity=0.202  Sum_probs=82.4

Q ss_pred             ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC-
Q 045865           21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL-   99 (225)
Q Consensus        21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l-   99 (225)
                      ++++|+++++.+.    +++.    -.++|++|++++|.+.. +|.       ...+|+.|++.+|.++..     ..+ 
T Consensus        39 ~l~~LdLs~~~L~----~lp~----~~~~L~~L~Ls~N~l~~-lp~-------~~~~L~~L~l~~n~l~~l-----~~lp   97 (353)
T d1jl5a_          39 QAHELELNNLGLS----SLPE----LPPHLESLVASCNSLTE-LPE-------LPQSLKSLLVDNNNLKAL-----SDLP   97 (353)
T ss_dssp             TCSEEECTTSCCS----CCCS----CCTTCSEEECCSSCCSS-CCC-------CCTTCCEEECCSSCCSCC-----CSCC
T ss_pred             CCCEEEeCCCCCC----CCCC----CCCCCCEEECCCCCCcc-ccc-------chhhhhhhhhhhcccchh-----hhhc
Confidence            4667777777765    4432    24567777777777765 343       245777777777776542     122 


Q ss_pred             CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcE
Q 045865          100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEH  179 (225)
Q Consensus       100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  179 (225)
                      +.|++|++++|.+. .+|  .+..+++|+.+++.++.+... +   .. ...+..+.+..+....  .. .+..++.++.
T Consensus        98 ~~L~~L~L~~n~l~-~lp--~~~~l~~L~~L~l~~~~~~~~-~---~~-~~~l~~l~~~~~~~~~--~~-~l~~l~~l~~  166 (353)
T d1jl5a_          98 PLLEYLGVSNNQLE-KLP--ELQNSSFLKIIDVDNNSLKKL-P---DL-PPSLEFIAAGNNQLEE--LP-ELQNLPFLTA  166 (353)
T ss_dssp             TTCCEEECCSSCCS-SCC--CCTTCTTCCEEECCSSCCSCC-C---CC-CTTCCEEECCSSCCSS--CC-CCTTCTTCCE
T ss_pred             cccccccccccccc-ccc--chhhhccceeecccccccccc-c---cc-cccccchhhccccccc--cc-ccccccccee
Confidence            35777777777775 555  345667777777777665421 1   11 3556666665554431  12 4566777788


Q ss_pred             EEccCCcc
Q 045865          180 FDMRFARI  187 (225)
Q Consensus       180 l~l~~n~i  187 (225)
                      ++++.|.+
T Consensus       167 L~l~~n~~  174 (353)
T d1jl5a_         167 IYADNNSL  174 (353)
T ss_dssp             EECCSSCC
T ss_pred             cccccccc
Confidence            88877743

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.43  E-value=2.1e-06  Score=59.18  Aligned_cols=122  Identities=20%  Similarity=0.196  Sum_probs=67.9

Q ss_pred             HHhhhhhcCCCCccEEEccC-CcccCcchhhHHHHHhcCCCCCEEECCCCCCChhh----HHhhhcCCCCCEEEcCCCCC
Q 045865           38 YLNASLFTPFQQLESLDLTQ-NKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSI----LSSLTHLSSLRSLNLLWNRL  112 (225)
Q Consensus        38 ~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~----~~~l~~l~~L~~L~l~~n~~  112 (225)
                      ++......+.+.|++|++++ +.+....-...+..+...++|++|++++|.++...    ...+.....++.+++.++.+
T Consensus         7 ~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_           7 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            33444555667777887776 34544333334455667777888888877776432    23444556777777777666


Q ss_pred             CCccch---hhhccCCCCceeec--CCCCCcHH----HHHHHHhhCCCCCEEecccc
Q 045865          113 EGSIDV---KELHNFTNLEYLTL--ESSSLHIS----LLQSIASIFPSLKNLSMSFC  160 (225)
Q Consensus       113 ~~~~~~---~~~~~l~~L~~l~l--~~~~~~~~----~~~~~~~~~~~L~~L~l~~n  160 (225)
                      .+....   ..+...++|+.+++  +.|.+.+.    +...+.. .+.|+.|++..+
T Consensus        87 ~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~-n~~L~~L~l~~~  142 (166)
T d1io0a_          87 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEK-NTTLLKFGYHFT  142 (166)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHH-CSSCCEEECCCS
T ss_pred             cchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHh-CCCcCEEeCcCC
Confidence            522111   13344556665444  34555543    2333444 566666666544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.35  E-value=1.1e-06  Score=60.66  Aligned_cols=119  Identities=18%  Similarity=0.118  Sum_probs=91.0

Q ss_pred             CcCceEEeeccc-cccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChh----h
Q 045865           18 TTGRVIALDLSY-IYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNS----I   92 (225)
Q Consensus        18 ~~~~v~~l~l~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~----~   92 (225)
                      ..+.+++|++++ +.+....+......+...++|++|++++|.+.......+...+...+.++.+++.++.+...    +
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            346899999998 56877666777788889999999999999987766665666788899999999999999753    3


Q ss_pred             HHhhhcCCCCCEEEcC--CCCCCCc----cchhhhccCCCCceeecCCCCC
Q 045865           93 LSSLTHLSSLRSLNLL--WNRLEGS----IDVKELHNFTNLEYLTLESSSL  137 (225)
Q Consensus        93 ~~~l~~l~~L~~L~l~--~n~~~~~----~~~~~~~~l~~L~~l~l~~~~~  137 (225)
                      ...+...+.|+.+++.  .|.+.+.    +. ..+...++|+.|++..+..
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La-~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIA-NMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHH-HHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHH-HHHHhCCCcCEEeCcCCCC
Confidence            3556677889987664  5556422    22 2456778999999987654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.4e-07  Score=65.07  Aligned_cols=40  Identities=33%  Similarity=0.365  Sum_probs=18.0

Q ss_pred             cCCCCCEEECCCCCCChh--hHHhhhcCCCCCEEEcCCCCCC
Q 045865           74 RLNNLKMLNLSGNSFNNS--ILSSLTHLSSLRSLNLLWNRLE  113 (225)
Q Consensus        74 ~l~~L~~L~l~~~~l~~~--~~~~l~~l~~L~~L~l~~n~~~  113 (225)
                      .+++|++|++++|.++..  .+..+..+++|+.|++++|.+.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence            344555555555544431  1233334444445555554444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=8.3e-07  Score=61.07  Aligned_cols=71  Identities=27%  Similarity=0.246  Sum_probs=52.3

Q ss_pred             hhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCC
Q 045865           41 ASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLE  113 (225)
Q Consensus        41 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~  113 (225)
                      ...+.++++|++|++++|.+....+-.  ..+..+++|+.|++++|.+.............|+.+++.+|.+.
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~--~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMS--SIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGG--THHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhH--HHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            445567999999999999998643210  04678999999999999998744433334556788888888775