Citrus Sinensis ID: 045901

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG
Secondary Structure (PSIPRED)
ccEEcccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHEEEEccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
masnglmpNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLadscmgrypmigFGCIISLLGMVLLWFtaifpqekppvcdqmrsgcesATASQLMLLYSAFGLmslgggsirasslvfgadqldkgngaknagALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG
Flexible Loop (DISEMBL)
MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG
Low Complexity Region (SEG)
MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG
Disordered region (IsUnstruct)
*******PNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQ****
Disordered Region (DISOPRED)
MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKP**************ASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKG********LQSYFSWYYVSIAAGSMLSATFIVYIQDNLG
Disordered Region (DISEMBL)
MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG
Disordered Region (DISPRO)
MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	171	2.2.26 [Sep-21-2011]
Q9M817	607	Probable peptide transpor	yes	no	1.0	0.281	0.554	6e-49
Q8LPL2	591	Probable peptide/nitrate	no	no	1.0	0.289	0.523	1e-44
Q9LYD5	481	Putative peptide/nitrate	no	no	0.976	0.347	0.465	1e-39
Q9CAR9	555	Putative peptide/nitrate	no	no	0.988	0.304	0.406	1e-33
Q8RX77	620	Nitrate transporter 1.7 O	no	no	0.988	0.272	0.339	3e-26
Q9SX20	596	Probable nitrite transpor	no	no	0.988	0.283	0.397	1e-24
Q9LFX9	576	Nitrate transporter 1.6 O	no	no	0.970	0.288	0.345	2e-23
Q9M9V7	587	Probable peptide/nitrate	no	no	0.941	0.274	0.361	2e-23
Q9M1E1	557	Probable nitrate excretio	no	no	0.959	0.294	0.364	4e-23
Q3E8X3	559	Probable peptide/nitrate	no	no	0.982	0.300	0.345	4e-23

>sp|Q9M817|PTR6_ARATH Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1

 Score =  193 bits (490), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 96/173 (55%), Positives = 120/173 (69%), Gaps = 2/173 (1%)

Query: 1   MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFG 60
           +AS GL+PNMI+YL R+Y       TNVLF+W+AA+NF P+LGAFL+DS +GR+  I   
Sbjct: 40  VASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFTPLLGAFLSDSYLGRFLTISIA 99

Query: 61  CIISLLGMVLLWFTAIFPQEKPPVCDQMRSG--CESATASQLMLLYSAFGLMSLGGGSIR 118
            + S LGMVLLW TA+ PQ KP  CD   +G  C S+TASQL LLYSAF L+S+G G IR
Sbjct: 100 SLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTASQLALLYSAFALISIGSGGIR 159

Query: 119 ASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG 171
             SL FGADQLD     KN   L+S+F WYY S A   +++ T IVYIQ++LG
Sbjct: 160 PCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVLIAFTGIVYIQEHLG 212

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPL2|PTR32_ARATH Probable peptide/nitrate transporter At3g16180 OS=Arabidopsis thaliana GN=At3g16180 PE=2 SV=2

 Score =  179 bits (453), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 90/172 (52%), Positives = 116/172 (67%), Gaps = 1/172 (0%)

Query: 1   MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFG 60
           +AS GL+ NMILYL  +Y +       VLF+W AATNF+P++GAFL+DS +GR+  I   
Sbjct: 42  VASYGLLQNMILYLMSDYRLGLVKGQTVLFMWVAATNFMPLVGAFLSDSYLGRFLTIVIA 101

Query: 61  CIISLLGMVLLWFTAIFPQEKP-PVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRA 119
            + SLLGMV+LW TA+ PQ KP P      + C SAT+SQL LLY+AF L+S+G G IR 
Sbjct: 102 SLSSLLGMVVLWLTAMLPQVKPSPCVATAGTNCSSATSSQLALLYTAFALISIGSGGIRP 161

Query: 120 SSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG 171
            SL FGADQLD     KN   L+S+F WYY S +   +++ T IVYIQD+LG
Sbjct: 162 CSLAFGADQLDNKENPKNERVLESFFGWYYASSSVAVLIAFTVIVYIQDHLG 213

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYD5|PTR48_ARATH Putative peptide/nitrate transporter At5g11570 OS=Arabidopsis thaliana GN=At5g11570 PE=2 SV=1

 Score =  162 bits (409), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 80/172 (46%), Positives = 112/172 (65%), Gaps = 5/172 (2%)

Query: 1   MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFG 60
           +A  GL+PNMIL+L  EY M T  A N+LF+W+AATNF P++GAF+ADS  GR+P+IGFG
Sbjct: 32  LAYFGLVPNMILFLTVEYGMGTAEAANILFLWSAATNFFPLVGAFIADSYTGRFPLIGFG 91

Query: 61  CIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRAS 120
             ISL GMVLLW T I      P CD++ + C+  T  + +LLYS F L ++G G +R+S
Sbjct: 92  SSISLTGMVLLWLTTII----RPECDKLTNVCQPTTLLKSVLLYSFFALTAIGAGGVRSS 147

Query: 121 SLVFGADQLDKGNGAK-NAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG 171
            L F ADQL     ++    +L++ F+WYY S+     LS + +V++Q   G
Sbjct: 148 CLAFAADQLQPNQTSRVTTSSLETLFNWYYFSVMVACFLSQSLLVFVQTTYG 199

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAR9|PTR20_ARATH Putative peptide/nitrate transporter At1g69860 OS=Arabidopsis thaliana GN=At1g69860 PE=5 SV=1

 Score =  142 bits (358), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 108/172 (62%), Gaps = 3/172 (1%)

Query: 1   MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFG 60
           +A+ GLM N ++Y+ REY+M+   A  ++  W+A TNF PI+GAF++DS  G++  I FG
Sbjct: 37  LATFGLMANFMVYMVREYHMDQVQAVTLINTWSALTNFAPIIGAFISDSYTGKFNTIVFG 96

Query: 61  CIISLLGMVLLWFTAIFPQEKPPVC--DQMRSGCESATASQLMLLYSAFGLMSLGGGSIR 118
            I  LLGM++L FT++ P  +PP C  DQ+   C   + SQL +L S   L+S+G G IR
Sbjct: 97  SIAELLGMLVLTFTSLVPNLRPPPCTADQITGQCIPYSYSQLYVLLSGLFLLSVGTGGIR 156

Query: 119 ASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNL 170
           + S+ F  DQ D        G+ +S+FSWYY +     ++S T ++Y+Q+N+
Sbjct: 157 SCSVPFSLDQFDDSTEEGREGS-RSFFSWYYTTHTIVQLVSMTLVLYVQNNI 207

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RX77|PTR21_ARATH Nitrate transporter 1.7 OS=Arabidopsis thaliana GN=NRT1.7 PE=1 SV=1

 Score =  117 bits (294), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 98/171 (57%), Gaps = 2/171 (1%)

Query: 1   MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFG 60
           + S GL+ N ++YL + +++E   A NV+ IW+  TN  P++GA+++D+ +GR+  I F 
Sbjct: 70  LGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFTNLTPLVGAYISDTYVGRFKTIAFA 129

Query: 61  CIISLLGMVLLWFTAIFPQEKPPVCD-QMRSGCESATASQLMLLYSAFGLMSLGGGSIRA 119
              +LLG++ +  TA FPQ  P  C+ Q    C      Q+ +L      +S+G G IR 
Sbjct: 130 SFATLLGLITITLTASFPQLHPASCNSQDPLSCGGPNKLQIGVLLLGLCFLSVGSGGIRP 189

Query: 120 SSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNL 170
            S+ FG DQ D+    +    + S+F+WYY++     +++ T +VYIQD +
Sbjct: 190 CSIPFGVDQFDQ-RTEEGVKGVASFFNWYYMTFTVVLIITQTVVVYIQDQV 239

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1

 Score =  112 bits (280), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/171 (39%), Positives = 97/171 (56%), Gaps = 2/171 (1%)

Query: 1   MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFG 60
           +A  G   NMI YL  + ++  T A N L  +   ++  P+LGAF+ADS  GR+  I F 
Sbjct: 42  LAVVGFHANMISYLTTQLHLPLTKAANTLTNFAGTSSLTPLLGAFIADSFAGRFWTITFA 101

Query: 61  CIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRAS 120
            II  +GM LL  +AI P  +PP C +    C  A  +QL +LY A  L +LG G IR  
Sbjct: 102 SIIYQIGMTLLTISAIIPTLRPPPC-KGEEVCVVADTAQLSILYVALLLGALGSGGIRPC 160

Query: 121 SLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG 171
            + FGADQ D+ +  +      +YF+WYY  + A  +L+ T +V+IQDN+G
Sbjct: 161 VVAFGADQFDESDPNQTTKTW-NYFNWYYFCMGAAVLLAVTVLVWIQDNVG 210

May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFX9|PTR13_ARATH Nitrate transporter 1.6 OS=Arabidopsis thaliana GN=NRT1.6 PE=1 SV=2

 Score =  108 bits (270), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 95/168 (56%), Gaps = 2/168 (1%)

Query: 1   MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFG 60
           + S G+  N +LYL   ++ME   A NV ++W   TNF P+LGA ++D+ +GR+  I + 
Sbjct: 33  LGSIGVSANFMLYLRNVFHMEPVEAFNVYYLWMGLTNFAPLLGALISDAYIGRFKTIAYA 92

Query: 61  CIISLLGMVLLWFTAIFPQ-EKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRA 119
            + S+LG++ +  TA  PQ   PP  +     C+     QL +L+   G +S+G G IR 
Sbjct: 93  SLFSILGLMTVTLTACLPQLHPPPCNNPHPDECDDPNKLQLGILFLGLGFLSIGSGGIRP 152

Query: 120 SSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQ 167
            S+ FG DQ D+    +    + S+F+WYY+++    + S T +VY+Q
Sbjct: 153 CSIPFGVDQFDQ-RTEQGLKGVASFFNWYYLTLTMVLIFSHTVVVYLQ 199

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in delivering nitrate for seed development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9V7|PTR8_ARATH Probable peptide/nitrate transporter At1g18880 OS=Arabidopsis thaliana GN=At1g18880 PE=2 SV=1

 Score =  108 bits (269), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 88/163 (53%), Gaps = 2/163 (1%)

Query: 9   NMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGM 68
           N+++YL   +NM++  A  V+ I+   +NF  I+ AFL DS  GRY  + F  I   LG 
Sbjct: 46  NLVIYLTTVFNMKSITAAKVVNIYGGTSNFGTIVAAFLCDSYFGRYKTLSFAMIACFLGS 105

Query: 69  VLLWFTAIFPQEKPPVC-DQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGAD 127
           V +  TA+     P  C  ++ S C   +  Q+M L  A  L+ +G G IR  +L FGAD
Sbjct: 106 VAMDLTAVIHPLHPAQCAKEIGSVCNGPSIGQIMFLAGAMVLLVIGAGGIRPCNLPFGAD 165

Query: 128 QLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNL 170
           Q D        G ++S+F+WY+ +     M+S T IVY+Q N+
Sbjct: 166 QFDPKTKEGKRG-IESFFNWYFFTFTFAQMVSLTLIVYVQSNV 207

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1E1|PTR38_ARATH Probable nitrate excretion transporter 2 OS=Arabidopsis thaliana GN=At3g45660 PE=2 SV=1

 Score =  107 bits (267), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 99/170 (58%), Gaps = 6/170 (3%)

Query: 1   MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFG 60
           +A+ G + N+I+YL  EYNM++ AA  +L I++  T   P +GA  ADS  G  P+I   
Sbjct: 40  LATLGWLQNLIVYLIEEYNMKSIAAAKILNIFSGFTFMFPAIGAIAADSFFGTIPVILVS 99

Query: 61  CIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRAS 120
             ISL+G+VLL  T +F   +P  C+     C++ T  QL +LY+A  L  +G G +R +
Sbjct: 100 SFISLVGVVLLALTTLFDSLRPQACETASKLCQAPTNIQLGVLYTAITLGCVGAGGLRFT 159

Query: 121 SLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNL 170
               GA+Q +K    K+ G   S+F+W++ +    + +SAT IVY ++N+
Sbjct: 160 LATAGANQYEK---TKDQG---SFFNWFFFTWYLAASISATAIVYAEENI 203

Transporter involved in a passive nitrate efflux.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E8X3|PTR52_ARATH Probable peptide/nitrate transporter At5g28470 OS=Arabidopsis thaliana GN=At5g28470 PE=2 SV=2

 Score =  107 bits (266), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 97/171 (56%), Gaps = 3/171 (1%)

Query: 1   MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFG 60
           +AS  L+ N+ +YL  +YN+      NV+ IW  + N + + GAF++D+ +GR+  +  G
Sbjct: 36  LASMSLIGNLSVYLMTKYNLGGVFLVNVINIWFGSCNILTLAGAFVSDAYLGRFWTLLLG 95

Query: 61  CIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATAS-QLMLLYSAFGLMSLGGGSIRA 119
            I S +GM +   TA  P  +P  C    S C +  A  QL +L+S  GL+++G G +R 
Sbjct: 96  SIASFIGMGIFALTAALPSLRPDACID-PSNCSNQPAKWQLGVLFSGLGLLAIGAGGVRP 154

Query: 120 SSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNL 170
            ++ FGADQ D     K    L+++F+W+Y S     +++ T +VYIQ N+
Sbjct: 155 CNIAFGADQFDTST-KKGKAHLETFFNWWYFSFTVALVIALTGVVYIQTNI 204

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
297743243	622	unnamed protein product [Vitis vinifera]	1.0	0.274	0.555	2e-51
225442569	584	PREDICTED: probable peptide transporter	1.0	0.292	0.555	2e-51
255550992	578	nitrate transporter, putative [Ricinus c	1.0	0.295	0.581	5e-50
356507909	568	PREDICTED: probable peptide transporter	0.982	0.295	0.575	7e-49
297847594	607	proton-dependent oligopeptide transport	1.0	0.281	0.560	2e-47
15218183	607	putative peptide transporter [Arabidopsi	1.0	0.281	0.554	3e-47
21536862	292	unknown [Arabidopsis thaliana]	1.0	0.585	0.554	3e-47
255549914	612	nitrate transporter, putative [Ricinus c	1.0	0.279	0.520	5e-47
224089038	572	predicted protein [Populus trichocarpa]	1.0	0.298	0.526	1e-46
224087732	605	predicted protein [Populus trichocarpa]	1.0	0.282	0.515	5e-46

>gi|297743243|emb|CBI36110.3| unnamed protein product [Vitis vinifera]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 95/171 (55%), Positives = 128/171 (74%)

Query: 1   MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFG 60
           +AS GL+PNMILYL ++Y++     TN+LF+W+AATNF+P++GAFL+DS +GR+  IG G
Sbjct: 35  VASYGLLPNMILYLIQDYHLGVAKGTNILFLWSAATNFLPVVGAFLSDSYLGRFLTIGLG 94

Query: 61  CIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRAS 120
            I SLLGM+LLW TA+ P+ KPP CD +   C++ TA+Q +LLYS+F LMS+G G +R  
Sbjct: 95  SITSLLGMILLWLTAMIPKTKPPHCDLLTQSCKAPTAAQFILLYSSFALMSIGAGGVRPC 154

Query: 121 SLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG 171
           SL FGADQLDK +  KN   L+S+FSWYY S A   +++ T IVYIQ +LG
Sbjct: 155 SLAFGADQLDKRDNPKNERVLESFFSWYYASAALSVVIALTGIVYIQVHLG 205

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442569|ref|XP_002279092.1| PREDICTED: probable peptide transporter At1g52190-like [Vitis vinifera]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 95/171 (55%), Positives = 128/171 (74%)

Query: 1   MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFG 60
           +AS GL+PNMILYL ++Y++     TN+LF+W+AATNF+P++GAFL+DS +GR+  IG G
Sbjct: 35  VASYGLLPNMILYLIQDYHLGVAKGTNILFLWSAATNFLPVVGAFLSDSYLGRFLTIGLG 94

Query: 61  CIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRAS 120
            I SLLGM+LLW TA+ P+ KPP CD +   C++ TA+Q +LLYS+F LMS+G G +R  
Sbjct: 95  SITSLLGMILLWLTAMIPKTKPPHCDLLTQSCKAPTAAQFILLYSSFALMSIGAGGVRPC 154

Query: 121 SLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG 171
           SL FGADQLDK +  KN   L+S+FSWYY S A   +++ T IVYIQ +LG
Sbjct: 155 SLAFGADQLDKRDNPKNERVLESFFSWYYASAALSVVIALTGIVYIQVHLG 205

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550992|ref|XP_002516544.1| nitrate transporter, putative [Ricinus communis] gi|223544364|gb|EEF45885.1| nitrate transporter, putative [Ricinus communis]

 Score =  202 bits (513), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 100/172 (58%), Positives = 127/172 (73%), Gaps = 1/172 (0%)

Query: 1   MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFG 60
           +AS GL PNMILYL REY +E     N++F W+AATNF PILGAF+ADS +GR+ MIGFG
Sbjct: 40  VASFGLTPNMILYLTREYRIEAAKGANIIFFWSAATNFTPILGAFIADSYVGRFRMIGFG 99

Query: 61  CIISLLGMVLLWFTAIFPQEKPPVCDQMRS-GCESATASQLMLLYSAFGLMSLGGGSIRA 119
            I SLLG++LLW TA+ PQ +P  CDQ  S  C+S T  QL+LLYS+FGL+S+G G IR+
Sbjct: 100 SIASLLGIILLWLTAVIPQARPLPCDQFTSDSCQSPTTLQLLLLYSSFGLLSIGAGGIRS 159

Query: 120 SSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG 171
           SSL FGADQL  G   K AG L+ + SWYYV ++  ++++ T IVYIQD +G
Sbjct: 160 SSLAFGADQLGMGQSLKRAGILERFISWYYVLVSVSAVVAMTCIVYIQDAMG 211

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507909|ref|XP_003522705.1| PREDICTED: probable peptide transporter At1g52190-like [Glycine max]

 Score =  198 bits (503), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 99/172 (57%), Positives = 124/172 (72%), Gaps = 4/172 (2%)

Query: 1   MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFG 60
           +AS GLMPNMILYL REY M+T  ATN L +W+AA+NF P +GA L+DS +GRY MI FG
Sbjct: 42  LASLGLMPNMILYLTREYGMQTAGATNFLLLWSAASNFTPFVGAVLSDSYVGRYSMIAFG 101

Query: 61  CIISLLGMVLLWFTAIFPQEKPPVCDQMRSGC-ESATASQLMLLYSAFGLMSLGGGSIRA 119
            I SLLGMVLLW T + P  K P+C+Q  + C  S T   L++L+S+F LMS+G G IR+
Sbjct: 102 SIASLLGMVLLWLTTLIPLSK-PLCNQFTNSCNNSPTTIHLLILHSSFALMSIGAGGIRS 160

Query: 120 SSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG 171
           SSL FG DQL K +  KNAG  +SYFSWYY  +A  S++  T +VYIQDN+G
Sbjct: 161 SSLAFGVDQLSKRD--KNAGIKESYFSWYYAIVAMSSLIGLTVVVYIQDNMG 210

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847594|ref|XP_002891678.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297337520|gb|EFH67937.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 97/173 (56%), Positives = 120/173 (69%), Gaps = 2/173 (1%)

Query: 1   MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFG 60
           +AS GL+PNMI+YL R+Y       TNVLF+W+AA+NF P+LGAFL+DS +GR+  I   
Sbjct: 40  VASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFTPLLGAFLSDSYLGRFLTISIA 99

Query: 61  CIISLLGMVLLWFTAIFPQEKPPVCDQMRSG--CESATASQLMLLYSAFGLMSLGGGSIR 118
            + S LGMVLLW TA+ PQ KP  CD   +G  C SATASQL LLYSAF L+S+G G IR
Sbjct: 100 SLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSATASQLALLYSAFALISIGSGGIR 159

Query: 119 ASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG 171
             SL FGADQLD     KN   L+S+F WYY S A   +++ T IVYIQ++LG
Sbjct: 160 PCSLAFGADQLDNKEKPKNERILESFFGWYYASSAVAVLIAFTGIVYIQEHLG 212

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218183|ref|NP_175630.1| putative peptide transporter [Arabidopsis thaliana] gi|75186219|sp|Q9M817.1|PTR2X_ARATH RecName: Full=Probable peptide transporter At1g52190 gi|6850341|gb|AAF29404.1|AC022354_3 peptide transporter, putative [Arabidopsis thaliana] gi|332194645|gb|AEE32766.1| putative peptide transporter [Arabidopsis thaliana]

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 96/173 (55%), Positives = 120/173 (69%), Gaps = 2/173 (1%)

Query: 1   MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFG 60
           +AS GL+PNMI+YL R+Y       TNVLF+W+AA+NF P+LGAFL+DS +GR+  I   
Sbjct: 40  VASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFTPLLGAFLSDSYLGRFLTISIA 99

Query: 61  CIISLLGMVLLWFTAIFPQEKPPVCDQMRSG--CESATASQLMLLYSAFGLMSLGGGSIR 118
            + S LGMVLLW TA+ PQ KP  CD   +G  C S+TASQL LLYSAF L+S+G G IR
Sbjct: 100 SLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTASQLALLYSAFALISIGSGGIR 159

Query: 119 ASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG 171
             SL FGADQLD     KN   L+S+F WYY S A   +++ T IVYIQ++LG
Sbjct: 160 PCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVLIAFTGIVYIQEHLG 212

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536862|gb|AAM61194.1| unknown [Arabidopsis thaliana]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 96/173 (55%), Positives = 120/173 (69%), Gaps = 2/173 (1%)

Query: 1   MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFG 60
           +AS GL+PNMI+YL R+Y       TNVLF+W+AA+NF P+LGAFL+DS +GR+  I   
Sbjct: 40  VASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFTPLLGAFLSDSYLGRFLTISIA 99

Query: 61  CIISLLGMVLLWFTAIFPQEKPPVCDQMRSG--CESATASQLMLLYSAFGLMSLGGGSIR 118
            + S LGMVLLW TA+ PQ KP  CD   +G  C S+TASQL LLYSAF L+S+G G IR
Sbjct: 100 SLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTASQLALLYSAFALISIGSGGIR 159

Query: 119 ASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG 171
             SL FGADQLD     KN   L+S+F WYY S A   +++ T IVYIQ++LG
Sbjct: 160 PCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVLIAFTGIVYIQEHLG 212

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549914|ref|XP_002516008.1| nitrate transporter, putative [Ricinus communis] gi|223544913|gb|EEF46428.1| nitrate transporter, putative [Ricinus communis]

 Score =  192 bits (487), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 89/171 (52%), Positives = 117/171 (68%)

Query: 1   MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFG 60
           ++S GL+PNMI YL ++Y +      N++F+W AATNF+P+LGAF++DS +GRY  IG G
Sbjct: 47  VSSYGLLPNMIFYLMKDYGLGVAKGANIIFLWNAATNFMPLLGAFISDSYLGRYLTIGLG 106

Query: 61  CIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRAS 120
            I SLLG VLLW T + PQ KPP+CD M   C+S TA Q+ +L S+   +S+G G IR  
Sbjct: 107 SIFSLLGTVLLWLTTMIPQSKPPLCDLMTQNCKSPTAGQITMLLSSMAFISIGAGGIRPC 166

Query: 121 SLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG 171
           SL FGADQLD  +  KN   L+SYF WYY S A   +++ T IVYIQD+ G
Sbjct: 167 SLAFGADQLDNKSNPKNERILESYFGWYYASTAISVLIALTGIVYIQDHHG 217

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089038|ref|XP_002308609.1| predicted protein [Populus trichocarpa] gi|222854585|gb|EEE92132.1| predicted protein [Populus trichocarpa]

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 90/171 (52%), Positives = 118/171 (69%)

Query: 1   MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFG 60
           +AS GLMPNMI YL + Y ME  + + +LF+W+A +N + I GAFL+DS MGRY +I  G
Sbjct: 39  VASYGLMPNMIFYLMKNYRMEAASGSTILFLWSAMSNGLSIFGAFLSDSFMGRYLVISLG 98

Query: 61  CIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRAS 120
              SLLGM+LLW TA+ PQ  PP CD+  + C SATA QL  L+S+FGL+S+G G IR  
Sbjct: 99  SFCSLLGMILLWLTAMIPQLTPPPCDRFTNVCSSATAGQLATLFSSFGLISIGAGCIRPC 158

Query: 121 SLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG 171
           S+ FGADQLD      N   LQS+F+WYY +    ++++ T IVY+QDNLG
Sbjct: 159 SIAFGADQLDNKENPNNESVLQSFFNWYYAATGLSTIIAFTAIVYVQDNLG 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087732|ref|XP_002335129.1| predicted protein [Populus trichocarpa] gi|222832886|gb|EEE71363.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (479), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 100/194 (51%), Positives = 123/194 (63%), Gaps = 23/194 (11%)

Query: 1   MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFG 60
           +AS GL  NMILYL REY M+  +   +LF+++AA NF+PI+GAFLAD+ +GRYPMIGFG
Sbjct: 29  LASFGLSTNMILYLTREYGMDAASGAQILFLYSAAGNFMPIIGAFLADTYVGRYPMIGFG 88

Query: 61  CIISLL----------------------GMVLLWFTAIFPQEKPPVCDQMRSGC-ESATA 97
           CI SLL                      GMVLLW T I P  + P C Q  S C   AT 
Sbjct: 89  CIASLLTTIYVSGQRIYGSVAILSQTKVGMVLLWLTTIIPGARVPSCAQFSSNCTNDATT 148

Query: 98  SQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSM 157
            QL+ LY   GLMS+G G IR+ SL FGADQL K +  K+AG L+S+FSWYYV+ +A   
Sbjct: 149 PQLLFLYFCLGLMSIGAGGIRSCSLAFGADQLSKRDSLKHAGILESFFSWYYVTSSASVF 208

Query: 158 LSATFIVYIQDNLG 171
           +S T IVYIQD +G
Sbjct: 209 ISMTCIVYIQDTMG 222

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
TAIR|locus:2037452	607	AT1G52190 [Arabidopsis thalian	1.0	0.281	0.554	6.9e-47
TAIR|locus:2093442	591	AT3G16180 [Arabidopsis thalian	1.0	0.289	0.523	3.5e-43
TAIR|locus:2144281	481	AT5G11570 [Arabidopsis thalian	0.976	0.347	0.465	6.1e-39
TAIR|locus:2196734	555	AT1G69860 [Arabidopsis thalian	0.988	0.304	0.406	3e-32
TAIR|locus:2205719	576	NRT1.6 "nitrate transporter 1.	0.970	0.288	0.357	3.8e-27
TAIR|locus:2026884	596	AT1G68570 [Arabidopsis thalian	0.988	0.283	0.397	1.9e-26
TAIR|locus:2196800	620	NRT1.7 "nitrate transporter 1.	0.988	0.272	0.339	9.8e-26
TAIR|locus:2147499	559	AT5G28470 [Arabidopsis thalian	0.982	0.300	0.345	5.3e-25
TAIR|locus:2035005	587	NRT1.9 "nitrate transporter 1.	0.964	0.281	0.359	7.6e-24
TAIR|locus:2085662	557	AT3G45660 [Arabidopsis thalian	0.959	0.294	0.364	8.4e-24

TAIR|locus:2037452 AT1G52190 [Arabidopsis thaliana (taxid:3702)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 96/173 (55%), Positives = 120/173 (69%)

Query:     1 MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFG 60
             +AS GL+PNMI+YL R+Y       TNVLF+W+AA+NF P+LGAFL+DS +GR+  I   
Sbjct:    40 VASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFTPLLGAFLSDSYLGRFLTISIA 99

Query:    61 CIISLLGMVLLWFTAIFPQEKPPVCDQMRSG--CESATASQLMLLYSAFGLMSLGGGSIR 118
              + S LGMVLLW TA+ PQ KP  CD   +G  C S+TASQL LLYSAF L+S+G G IR
Sbjct:   100 SLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTASQLALLYSAFALISIGSGGIR 159

Query:   119 ASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG 171
               SL FGADQLD     KN   L+S+F WYY S A   +++ T IVYIQ++LG
Sbjct:   160 PCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVLIAFTGIVYIQEHLG 212

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2093442 AT3G16180 [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 90/172 (52%), Positives = 116/172 (67%)

Query:     1 MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFG 60
             +AS GL+ NMILYL  +Y +       VLF+W AATNF+P++GAFL+DS +GR+  I   
Sbjct:    42 VASYGLLQNMILYLMSDYRLGLVKGQTVLFMWVAATNFMPLVGAFLSDSYLGRFLTIVIA 101

Query:    61 CIISLLGMVLLWFTAIFPQEKPPVCDQMR-SGCESATASQLMLLYSAFGLMSLGGGSIRA 119
              + SLLGMV+LW TA+ PQ KP  C     + C SAT+SQL LLY+AF L+S+G G IR 
Sbjct:   102 SLSSLLGMVVLWLTAMLPQVKPSPCVATAGTNCSSATSSQLALLYTAFALISIGSGGIRP 161

Query:   120 SSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG 171
              SL FGADQLD     KN   L+S+F WYY S +   +++ T IVYIQD+LG
Sbjct:   162 CSLAFGADQLDNKENPKNERVLESFFGWYYASSSVAVLIAFTVIVYIQDHLG 213

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2144281 AT5G11570 [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 80/172 (46%), Positives = 112/172 (65%)

Query:     1 MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFG 60
             +A  GL+PNMIL+L  EY M T  A N+LF+W+AATNF P++GAF+ADS  GR+P+IGFG
Sbjct:    32 LAYFGLVPNMILFLTVEYGMGTAEAANILFLWSAATNFFPLVGAFIADSYTGRFPLIGFG 91

Query:    61 CIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRAS 120
               ISL GMVLLW T I      P CD++ + C+  T  + +LLYS F L ++G G +R+S
Sbjct:    92 SSISLTGMVLLWLTTIIR----PECDKLTNVCQPTTLLKSVLLYSFFALTAIGAGGVRSS 147

Query:   121 SLVFGADQLDKGNGAK-NAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG 171
              L F ADQL     ++    +L++ F+WYY S+     LS + +V++Q   G
Sbjct:   148 CLAFAADQLQPNQTSRVTTSSLETLFNWYYFSVMVACFLSQSLLVFVQTTYG 199

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2196734 AT1G69860 [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 3.0e-32, P = 3.0e-32
 Identities = 70/172 (40%), Positives = 108/172 (62%)

Query:     1 MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFG 60
             +A+ GLM N ++Y+ REY+M+   A  ++  W+A TNF PI+GAF++DS  G++  I FG
Sbjct:    37 LATFGLMANFMVYMVREYHMDQVQAVTLINTWSALTNFAPIIGAFISDSYTGKFNTIVFG 96

Query:    61 CIISLLGMVLLWFTAIFPQEKPPVC--DQMRSGCESATASQLMLLYSAFGLMSLGGGSIR 118
              I  LLGM++L FT++ P  +PP C  DQ+   C   + SQL +L S   L+S+G G IR
Sbjct:    97 SIAELLGMLVLTFTSLVPNLRPPPCTADQITGQCIPYSYSQLYVLLSGLFLLSVGTGGIR 156

Query:   119 ASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNL 170
             + S+ F  DQ D        G+ +S+FSWYY +     ++S T ++Y+Q+N+
Sbjct:   157 SCSVPFSLDQFDDSTEEGREGS-RSFFSWYYTTHTIVQLVSMTLVLYVQNNI 207

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2205719 NRT1.6 "nitrate transporter 1.6" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 3.8e-27, P = 3.8e-27
 Identities = 60/168 (35%), Positives = 96/168 (57%)

Query:     1 MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFG 60
             + S G+  N +LYL   ++ME   A NV ++W   TNF P+LGA ++D+ +GR+  I + 
Sbjct:    33 LGSIGVSANFMLYLRNVFHMEPVEAFNVYYLWMGLTNFAPLLGALISDAYIGRFKTIAYA 92

Query:    61 CIISLLGMVLLWFTAIFPQEKPPVCDQMRSG-CESATASQLMLLYSAFGLMSLGGGSIRA 119
              + S+LG++ +  TA  PQ  PP C+      C+     QL +L+   G +S+G G IR 
Sbjct:    93 SLFSILGLMTVTLTACLPQLHPPPCNNPHPDECDDPNKLQLGILFLGLGFLSIGSGGIRP 152

Query:   120 SSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQ 167
              S+ FG DQ D+       G + S+F+WYY+++    + S T +VY+Q
Sbjct:   153 CSIPFGVDQFDQRTEQGLKG-VASFFNWYYLTLTMVLIFSHTVVVYLQ 199

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0010098 "suspensor development" evidence=IMP

GO:0043562 "cellular response to nitrogen levels" evidence=IEP

GO:0048316 "seed development" evidence=IMP

GO:0080054 "low affinity nitrate transmembrane transporter activity" evidence=IDA

GO:0080055 "low affinity nitrate transport" evidence=IDA

TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 68/171 (39%), Positives = 97/171 (56%)

Query:     1 MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFG 60
             +A  G   NMI YL  + ++  T A N L  +   ++  P+LGAF+ADS  GR+  I F 
Sbjct:    42 LAVVGFHANMISYLTTQLHLPLTKAANTLTNFAGTSSLTPLLGAFIADSFAGRFWTITFA 101

Query:    61 CIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRAS 120
              II  +GM LL  +AI P  +PP C +    C  A  +QL +LY A  L +LG G IR  
Sbjct:   102 SIIYQIGMTLLTISAIIPTLRPPPC-KGEEVCVVADTAQLSILYVALLLGALGSGGIRPC 160

Query:   121 SLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG 171
              + FGADQ D+ +  +      +YF+WYY  + A  +L+ T +V+IQDN+G
Sbjct:   161 VVAFGADQFDESDPNQTTKTW-NYFNWYYFCMGAAVLLAVTVLVWIQDNVG 210

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2196800 NRT1.7 "nitrate transporter 1.7" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 9.8e-26, P = 9.8e-26
 Identities = 58/171 (33%), Positives = 98/171 (57%)

Query:     1 MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFG 60
             + S GL+ N ++YL + +++E   A NV+ IW+  TN  P++GA+++D+ +GR+  I F 
Sbjct:    70 LGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFTNLTPLVGAYISDTYVGRFKTIAFA 129

Query:    61 CIISLLGMVLLWFTAIFPQEKPPVCD-QMRSGCESATASQLMLLYSAFGLMSLGGGSIRA 119
                +LLG++ +  TA FPQ  P  C+ Q    C      Q+ +L      +S+G G IR 
Sbjct:   130 SFATLLGLITITLTASFPQLHPASCNSQDPLSCGGPNKLQIGVLLLGLCFLSVGSGGIRP 189

Query:   120 SSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNL 170
              S+ FG DQ D+    +    + S+F+WYY++     +++ T +VYIQD +
Sbjct:   190 CSIPFGVDQFDQRT-EEGVKGVASFFNWYYMTFTVVLIITQTVVVYIQDQV 239

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0015706 "nitrate transport" evidence=IMP

GO:0080054 "low affinity nitrate transmembrane transporter activity" evidence=IDA

GO:0080055 "low affinity nitrate transport" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2147499 AT5G28470 [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 5.3e-25, P = 5.3e-25
 Identities = 59/171 (34%), Positives = 97/171 (56%)

Query:     1 MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFG 60
             +AS  L+ N+ +YL  +YN+      NV+ IW  + N + + GAF++D+ +GR+  +  G
Sbjct:    36 LASMSLIGNLSVYLMTKYNLGGVFLVNVINIWFGSCNILTLAGAFVSDAYLGRFWTLLLG 95

Query:    61 CIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATAS-QLMLLYSAFGLMSLGGGSIRA 119
              I S +GM +   TA  P  +P  C    S C +  A  QL +L+S  GL+++G G +R 
Sbjct:    96 SIASFIGMGIFALTAALPSLRPDACIDP-SNCSNQPAKWQLGVLFSGLGLLAIGAGGVRP 154

Query:   120 SSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNL 170
              ++ FGADQ D     K    L+++F+W+Y S     +++ T +VYIQ N+
Sbjct:   155 CNIAFGADQFDTST-KKGKAHLETFFNWWYFSFTVALVIALTGVVYIQTNI 204

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IEP

TAIR|locus:2035005 NRT1.9 "nitrate transporter 1.9" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 7.6e-24, P = 7.6e-24
 Identities = 60/167 (35%), Positives = 89/167 (53%)

Query:     5 GLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIIS 64
             G   N+++YL   +NM++  A  V+ I+   +NF  I+ AFL DS  GRY  + F  I  
Sbjct:    42 GSSSNLVIYLTTVFNMKSITAAKVVNIYGGTSNFGTIVAAFLCDSYFGRYKTLSFAMIAC 101

Query:    65 LLGMVLLWFTAIFPQEKPPVC-DQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLV 123
              LG V +  TA+     P  C  ++ S C   +  Q+M L  A  L+ +G G IR  +L 
Sbjct:   102 FLGSVAMDLTAVIHPLHPAQCAKEIGSVCNGPSIGQIMFLAGAMVLLVIGAGGIRPCNLP 161

Query:   124 FGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNL 170
             FGADQ D        G ++S+F+WY+ +     M+S T IVY+Q N+
Sbjct:   162 FGADQFDPKTKEGKRG-IESFFNWYFFTFTFAQMVSLTLIVYVQSNV 207

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0010233 "phloem transport" evidence=IMP

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0090408 "phloem nitrate loading" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2085662 AT3G45660 [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 8.4e-24, P = 8.4e-24
 Identities = 62/170 (36%), Positives = 99/170 (58%)

Query:     1 MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFG 60
             +A+ G + N+I+YL  EYNM++ AA  +L I++  T   P +GA  ADS  G  P+I   
Sbjct:    40 LATLGWLQNLIVYLIEEYNMKSIAAAKILNIFSGFTFMFPAIGAIAADSFFGTIPVILVS 99

Query:    61 CIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRAS 120
               ISL+G+VLL  T +F   +P  C+     C++ T  QL +LY+A  L  +G G +R +
Sbjct:   100 SFISLVGVVLLALTTLFDSLRPQACETASKLCQAPTNIQLGVLYTAITLGCVGAGGLRFT 159

Query:   121 SLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNL 170
                 GA+Q +K    K+ G   S+F+W++ +    + +SAT IVY ++N+
Sbjct:   160 LATAGANQYEK---TKDQG---SFFNWFFFTWYLAASISATAIVYAEENI 203

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	171
pfam00854	372	pfam00854, PTR2, POT family	2e-13
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	6e-09
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	3e-05

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score = 66.2 bits (162), Expect = 2e-13
 Identities = 38/115 (33%), Positives = 53/115 (46%), Gaps = 19/115 (16%)

Query: 57  IGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGS 116
           I  G II  +G VLL   AI                 S +  Q+ L Y    L++LG G 
Sbjct: 4   ILLGSIIYAIGHVLLTLGAI---------------PPSLSPVQVALFYIGLYLIALGTGG 48

Query: 117 IRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG 171
           I+ +   FGADQ D+            +FSW+Y SI AGS+++     Y+Q N+G
Sbjct: 49  IKPNVSAFGADQFDETQ----DPRRDGFFSWFYFSINAGSLIATIITPYLQQNVG 99

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 53.6 bits (129), Expect = 6e-09
 Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 19/153 (12%)

Query: 10  MILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMV 69
           ++LYL          ATN+   +T      P++GA +ADS +G++  I +  ++ ++G  
Sbjct: 10  LVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYVVGHA 69

Query: 70  LLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQL 129
           L    A+     P              A  L+ L     L++LG G I+     FG DQ 
Sbjct: 70  LASLGAVPSLGHPLH-----------DALSLVGLA----LIALGTGGIKPCVSAFGGDQF 114

Query: 130 DKGNGAKNAGALQSYFSWYYVSIAAGSMLSATF 162
           ++            +FS++Y +I AGS+ S   
Sbjct: 115 EER----QLSLRFRFFSFFYFAINAGSLFSTII 143

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 30/166 (18%)

Query: 10  MILYLCREY----NMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISL 65
           +ILYL  +       + T AT +   + +     PI+G +LAD  +G    I  G I+  
Sbjct: 44  LILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMA 103

Query: 66  LGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFG 125
           +G ++L                      S +      LY    L+ +G G  + +     
Sbjct: 104 IGHLVL-------------------AISSVSG--PGGLYIGLALIIVGTGLFKPNISSLL 142

Query: 126 ADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG 171
            +   K +  ++ G     F+ +Y+ I  GS+++      +  N G
Sbjct: 143 GELYPKDDPRRDGG-----FTLFYMGINIGSLIAPIITGLLAINYG 183

Length = 498

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.91
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	99.9
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.89
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.88
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.85
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.84
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.79
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.59
PRK12382	392	putative transporter; Provisional	99.59
PRK10054	395	putative transporter; Provisional	99.58
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.57
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.56
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.56
PRK05122	399	major facilitator superfamily transporter; Provisi	99.56
TIGR00891	405	2A0112 putative sialic acid transporter.	99.55
TIGR00893	399	2A0114 d-galactonate transporter.	99.55
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.54
PRK12307	426	putative sialic acid transporter; Provisional	99.54
PRK03545	390	putative arabinose transporter; Provisional	99.53
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.53
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.53
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.51
TIGR00900	365	2A0121 H+ Antiporter protein.	99.51
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.51
PRK03633	381	putative MFS family transporter protein; Provision	99.51
PRK09705	393	cynX putative cyanate transporter; Provisional	99.5
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.5
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.5
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.49
TIGR00895	398	2A0115 benzoate transport.	99.48
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.48
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.48
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.48
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.47
PRK11663	434	regulatory protein UhpC; Provisional	99.47
PRK03893	496	putative sialic acid transporter; Provisional	99.47
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.47
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.47
PRK10504	471	putative transporter; Provisional	99.47
PRK11043	401	putative transporter; Provisional	99.46
PRK10091	382	MFS transport protein AraJ; Provisional	99.46
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.45
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.44
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.44
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.44
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.42
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.41
PRK10133	438	L-fucose transporter; Provisional	99.41
PRK03699	394	putative transporter; Provisional	99.41
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.4
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.39
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.39
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.39
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.39
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.37
PRK09874	408	drug efflux system protein MdtG; Provisional	99.36
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.36
TIGR00898	505	2A0119 cation transport protein.	99.36
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.34
TIGR00891	405	2A0112 putative sialic acid transporter.	99.33
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.32
PRK10642	490	proline/glycine betaine transporter; Provisional	99.31
PRK03699	394	putative transporter; Provisional	99.31
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.31
TIGR00900	365	2A0121 H+ Antiporter protein.	99.3
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.3
PLN00028	476	nitrate transmembrane transporter; Provisional	99.29
PRK15011	393	sugar efflux transporter B; Provisional	99.29
PRK15075	434	citrate-proton symporter; Provisional	99.28
PRK03893	496	putative sialic acid transporter; Provisional	99.28
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.27
PRK10642	490	proline/glycine betaine transporter; Provisional	99.27
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.26
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.26
TIGR00805	633	oat sodium-independent organic anion transporter.	99.26
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.26
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.26
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.25
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.25
PRK10489	417	enterobactin exporter EntS; Provisional	99.25
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.24
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.24
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.23
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.23
KOG0254	513	consensus Predicted transporter (major facilitator	99.23
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.22
PRK09705	393	cynX putative cyanate transporter; Provisional	99.22
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.21
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.21
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.21
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.21
PRK15011	393	sugar efflux transporter B; Provisional	99.21
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.21
PRK09952	438	shikimate transporter; Provisional	99.19
PRK10489	417	enterobactin exporter EntS; Provisional	99.18
PRK09952	438	shikimate transporter; Provisional	99.18
PRK09528	420	lacY galactoside permease; Reviewed	99.17
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.17
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.17
PRK15075	434	citrate-proton symporter; Provisional	99.16
PRK03545	390	putative arabinose transporter; Provisional	99.16
TIGR00893	399	2A0114 d-galactonate transporter.	99.14
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.14
TIGR00901	356	2A0125 AmpG-related permease.	99.14
PRK03633	381	putative MFS family transporter protein; Provision	99.14
TIGR00895	398	2A0115 benzoate transport.	99.14
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.14
KOG2532	466	consensus Permease of the major facilitator superf	99.13
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.13
PRK05122	399	major facilitator superfamily transporter; Provisi	99.13
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.12
PRK12307	426	putative sialic acid transporter; Provisional	99.12
PRK12382	392	putative transporter; Provisional	99.12
PF13347	428	MFS_2: MFS/sugar transport protein	99.11
PTZ00207	591	hypothetical protein; Provisional	99.11
PRK09848	448	glucuronide transporter; Provisional	99.09
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.09
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.07
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.06
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.06
PRK10504	471	putative transporter; Provisional	99.05
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.05
KOG2615	451	consensus Permease of the major facilitator superf	99.04
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.04
PRK09874	408	drug efflux system protein MdtG; Provisional	99.03
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.03
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.02
PRK09528	420	lacY galactoside permease; Reviewed	99.02
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.01
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.01
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.0
TIGR00901	356	2A0125 AmpG-related permease.	99.0
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.99
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.99
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.98
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.98
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.97
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.97
PRK09669	444	putative symporter YagG; Provisional	98.96
PRK09669	444	putative symporter YagG; Provisional	98.96
PRK10429	473	melibiose:sodium symporter; Provisional	98.95
PRK11010	491	ampG muropeptide transporter; Validated	98.95
PRK11663	434	regulatory protein UhpC; Provisional	98.94
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.93
PRK11902	402	ampG muropeptide transporter; Reviewed	98.93
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.93
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.92
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.92
PRK10091	382	MFS transport protein AraJ; Provisional	98.91
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.91
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.91
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.91
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.89
PRK10133	438	L-fucose transporter; Provisional	98.89
KOG0569	485	consensus Permease of the major facilitator superf	98.89
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.88
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.85
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.85
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.85
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.82
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.81
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.8
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.79
PRK10429	473	melibiose:sodium symporter; Provisional	98.78
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.78
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.76
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.74
PRK09848	448	glucuronide transporter; Provisional	98.73
PRK11010	491	ampG muropeptide transporter; Validated	98.73
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.73
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.72
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.71
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.7
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.69
PLN00028	476	nitrate transmembrane transporter; Provisional	98.67
PRK11902	402	ampG muropeptide transporter; Reviewed	98.66
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.66
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.65
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.63
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.63
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.62
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.61
PRK11462	460	putative transporter; Provisional	98.6
PRK10054	395	putative transporter; Provisional	98.6
PRK11043	401	putative transporter; Provisional	98.58
PRK11462	460	putative transporter; Provisional	98.58
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.52
PF13347	428	MFS_2: MFS/sugar transport protein	98.51
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.5
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.49
COG2211	467	MelB Na+/melibiose symporter and related transport	98.48
PF12832	77	MFS_1_like: MFS_1 like family	98.47
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.45
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.41
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.35
KOG2533	495	consensus Permease of the major facilitator superf	98.35
COG0477	338	ProP Permeases of the major facilitator superfamil	98.34
TIGR00898	505	2A0119 cation transport protein.	98.33
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.31
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.3
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.27
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.25
KOG0569	485	consensus Permease of the major facilitator superf	98.25
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.23
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.2
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.1
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.09
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.03
COG2211	467	MelB Na+/melibiose symporter and related transport	97.98
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.95
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.9
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.88
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.85
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.82
KOG3764	464	consensus Vesicular amine transporter [Intracellul	97.75
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.69
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.62
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	97.6
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.58
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.58
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.57
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.55
KOG2532	466	consensus Permease of the major facilitator superf	97.43
KOG2563	480	consensus Permease of the major facilitator superf	97.42
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.42
KOG3626	735	consensus Organic anion transporter [Secondary met	97.4
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.38
KOG3762	618	consensus Predicted transporter [General function	97.29
PTZ00207	591	hypothetical protein; Provisional	97.27
KOG0637	498	consensus Sucrose transporter and related proteins	97.2
KOG2533	495	consensus Permease of the major facilitator superf	97.13
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	97.11
TIGR00805	633	oat sodium-independent organic anion transporter.	97.11
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.1
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	96.94
COG2270	438	Permeases of the major facilitator superfamily [Ge	96.93
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.78
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	96.43
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	96.27
KOG0254	513	consensus Predicted transporter (major facilitator	96.26
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	96.07
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	96.05
KOG2615	451	consensus Permease of the major facilitator superf	95.82
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.67
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	95.58
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.24
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.16
PRK03612	521	spermidine synthase; Provisional	94.8
PRK15462	493	dipeptide/tripeptide permease D; Provisional	94.43
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	94.2
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	93.68
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	93.45
KOG1330	493	consensus Sugar transporter/spinster transmembrane	93.42
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	91.44
KOG3098	461	consensus Uncharacterized conserved protein [Funct	91.05
KOG3762	618	consensus Predicted transporter [General function	88.91
KOG3626	735	consensus Organic anion transporter [Secondary met	88.58
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	87.54
KOG3098	461	consensus Uncharacterized conserved protein [Funct	87.34
KOG2563	480	consensus Permease of the major facilitator superf	84.34

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.91  E-value=4.2e-25  Score=187.44  Aligned_cols=145  Identities=23%  Similarity=0.411  Sum_probs=134.9

Q ss_pred             CceeccHHHHHHHhhHhhC----CChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhh
Q 045901            1 MASNGLMPNMILYLCREYN----METTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAI   76 (171)
Q Consensus         1 ~~~~gv~~~l~~yl~~~lg----~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~   76 (171)
                      |+|||+...+..|++.+++    +|+++|..+.+.|....++++++|||+|||++|+||++..|.++..+|.++++.+. 
T Consensus        35 FsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~-  113 (498)
T COG3104          35 FSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS-  113 (498)
T ss_pred             HhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc-
Confidence            5899999999999999988    99999999999999999999999999999999999999999999999999887652 


Q ss_pred             cCCCCCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 045901           77 FPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGS  156 (171)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~  156 (171)
                                          ......+++++.++.+|.|+++|++.++++|+++++||+     |+..|+++|++.|+|+
T Consensus       114 --------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr-----rD~gFt~fY~~iNiGs  168 (498)
T COG3104         114 --------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR-----RDGGFTLFYMGINIGS  168 (498)
T ss_pred             --------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc-----cCCCccEEEEEeehHH
Confidence                                013567899999999999999999999999999998884     7899999999999999


Q ss_pred             HHHhHHHHhhccccC
Q 045901          157 MLSATFIVYIQDNLG  171 (171)
Q Consensus       157 ~i~~~~~~~i~~~~g  171 (171)
                      ++++.+.+++++++|
T Consensus       169 l~~p~i~~~~~~~~g  183 (498)
T COG3104         169 LIAPIITGLLAINYG  183 (498)
T ss_pred             HHHHHHHHHHHHhhC
Confidence            999999999999876

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=99.90  E-value=2.6e-23  Score=181.80  Aligned_cols=170  Identities=41%  Similarity=0.700  Sum_probs=155.1

Q ss_pred             CceeccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCC
Q 045901            1 MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQE   80 (171)
Q Consensus         1 ~~~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~   80 (171)
                      +++||+..|+..|++++++.+..+++..++.|.+.+.+.|+++++++|.|+||++++.++.+++.+|.++++.+...|.+
T Consensus        51 ~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l  130 (571)
T KOG1237|consen   51 LAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPAL  130 (571)
T ss_pred             HhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999998889998


Q ss_pred             CCCcc--cccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 045901           81 KPPVC--DQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSML  158 (171)
Q Consensus        81 ~~~~~--~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i  158 (171)
                      .|+.|  ......|+.++..+...++.++.++++|.|+.+|+..++++||+++.+++++ +.+.++|||+|+..|+|.++
T Consensus       131 ~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~-~~~~~fFnW~yf~~~~g~l~  209 (571)
T KOG1237|consen  131 LPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEV-KGIPSFFNWFYFSQNGGALL  209 (571)
T ss_pred             CCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchh-hCcccchhHHHHHHHHHHHH
Confidence            88876  3334468888878888999999999999999999999999999997666554 34669999999999999999


Q ss_pred             HhHHHHhhccccC
Q 045901          159 SATFIVYIQDNLG  171 (171)
Q Consensus       159 ~~~~~~~i~~~~g  171 (171)
                      +.++..|+|+++|
T Consensus       210 a~t~~vyiq~~~~  222 (571)
T KOG1237|consen  210 AQTVLVYIQDNVG  222 (571)
T ss_pred             HHHHHHhhhhccc
Confidence            9999999999875

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.89  E-value=2.1e-22  Score=178.62  Aligned_cols=151  Identities=25%  Similarity=0.496  Sum_probs=133.0

Q ss_pred             CceeccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCC
Q 045901            1 MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQE   80 (171)
Q Consensus         1 ~~~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~   80 (171)
                      ++|||+..++.+|+++++|+++.++..+.+.|.....+.|+++|+++|+++||+|++.++.++..+|..++++++. |..
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~~~   79 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-PSS   79 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-ccc
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999887652 211


Q ss_pred             CCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 045901           81 KPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSA  160 (171)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~  160 (171)
                      .+              ..+....++++.++++|.|+++|+..++++||++++++    +++.++|+|+|+++|+|+++++
T Consensus        80 ~~--------------~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~----~~~~s~F~~fY~~iNiGSlis~  141 (654)
T TIGR00926        80 GH--------------PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL----SLRSRFFSFFYFAINAGSLIST  141 (654)
T ss_pred             cc--------------chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch----hHHHHHHHHHHHHHHHHHHHHH
Confidence            10              11345577999999999999999999999999976433    3589999999999999999999


Q ss_pred             HHHHhhcccc
Q 045901          161 TFIVYIQDNL  170 (171)
Q Consensus       161 ~~~~~i~~~~  170 (171)
                      .+.+++++++
T Consensus       142 ~i~~~l~~~~  151 (654)
T TIGR00926       142 IITPILRGDV  151 (654)
T ss_pred             HHHHHHHHhh
Confidence            9999998653

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.88  E-value=7.8e-22  Score=170.18  Aligned_cols=144  Identities=19%  Similarity=0.362  Sum_probs=128.3

Q ss_pred             CceeccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCC
Q 045901            1 MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQE   80 (171)
Q Consensus         1 ~~~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~   80 (171)
                      ++||++..++++|+++++|+++.+++.+.+.+.....+.++++||++||++||||++.++.++..+|++++.++..    
T Consensus        28 ~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~----  103 (489)
T PRK10207         28 FGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLL----  103 (489)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhcc----
Confidence            4789999999999999999999999999999999999999999999999559999999999999999998877541    


Q ss_pred             CCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 045901           81 KPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSA  160 (171)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~  160 (171)
                                        ....+++++.++++|.|..+|+..++++|+++++++     +|++.++++|+..|+|+++++
T Consensus       104 ------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~-----~~~~~~~~~~~~~nig~~~g~  160 (489)
T PRK10207        104 ------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDP-----RLDGAFTLFYMSINIGSLISL  160 (489)
T ss_pred             ------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCch-----hhhcchhHHHHHHHHHHHHHH
Confidence                              123456789999999999999999999999976543     367899999999999999999


Q ss_pred             HHHHhhccccC
Q 045901          161 TFIVYIQDNLG  171 (171)
Q Consensus       161 ~~~~~i~~~~g  171 (171)
                      .+++++.+++|
T Consensus       161 ~l~g~l~~~~g  171 (489)
T PRK10207        161 SLAPVIADKFG  171 (489)
T ss_pred             HHHHHHHHhhC
Confidence            99999998764

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.85  E-value=7.7e-21  Score=163.32  Aligned_cols=144  Identities=20%  Similarity=0.383  Sum_probs=128.5

Q ss_pred             CceeccHHHHHHHhhHh--hCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcC
Q 045901            1 MASNGLMPNMILYLCRE--YNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFP   78 (171)
Q Consensus         1 ~~~~gv~~~l~~yl~~~--lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~   78 (171)
                      ++||++.+++++|++++  +|+++.+++.+.+.+.....++++++|+++||++||||++.++.++..++.+++.+++   
T Consensus        24 ~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~---  100 (475)
T TIGR00924        24 FSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSI---  100 (475)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcc---
Confidence            46899999999999988  9999999999999999999999999999999955999999999999999998877643   


Q ss_pred             CCCCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 045901           79 QEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSML  158 (171)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i  158 (171)
                                          +.+.+++++.+.++|.|..+|+..++++|++++++++    +|+++++++|+..|+|.++
T Consensus       101 --------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~----~r~~~~~~~~~~~niG~~i  156 (475)
T TIGR00924       101 --------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP----RRDGGFTLFYMSINIGSFI  156 (475)
T ss_pred             --------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc----cccceehhHHHHHHHHHHH
Confidence                                3456778889999999999999999999999865532    3688999999999999999


Q ss_pred             HhHHHHhhccccC
Q 045901          159 SATFIVYIQDNLG  171 (171)
Q Consensus       159 ~~~~~~~i~~~~g  171 (171)
                      ++.+.++++++.|
T Consensus       157 g~~l~g~l~~~~g  169 (475)
T TIGR00924       157 SPLLAGVIAENYG  169 (475)
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999988654

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.84  E-value=4.2e-20  Score=159.37  Aligned_cols=144  Identities=22%  Similarity=0.379  Sum_probs=125.1

Q ss_pred             CceeccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCC
Q 045901            1 MASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQE   80 (171)
Q Consensus         1 ~~~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~   80 (171)
                      ++||++...++.|+++++|+++.+++.+...+.....++++++||++||++||||++.++.++..+|.+++.....    
T Consensus        23 fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~----   98 (493)
T PRK15462         23 FSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEI----   98 (493)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhc----
Confidence            3689999999999999999999999999999999999999999999999889999999999999999876653210    


Q ss_pred             CCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 045901           81 KPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSA  160 (171)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~  160 (171)
                                        ....+.+++.+..+|.|..+|+.+++++|+++++++     +|.+.++++|...|+|+.+++
T Consensus        99 ------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~-----~R~sgf~i~Y~~~nlG~~iap  155 (493)
T PRK15462         99 ------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP-----RRDGGFSLMYAAGNVGSIIAP  155 (493)
T ss_pred             ------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc-----cccceehHHHHHHHHHHHHHH
Confidence                              112355667778899999999999999999987654     378899999999999999999


Q ss_pred             HHHHhhccccC
Q 045901          161 TFIVYIQDNLG  171 (171)
Q Consensus       161 ~~~~~i~~~~g  171 (171)
                      .+.+++.++.|
T Consensus       156 ~l~g~L~~~~G  166 (493)
T PRK15462        156 IACGYAQEEYS  166 (493)
T ss_pred             HHHHHHHhhhC
Confidence            99999987654

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.79  E-value=1.9e-18  Score=149.46  Aligned_cols=143  Identities=22%  Similarity=0.410  Sum_probs=124.2

Q ss_pred             ceeccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 045901            2 ASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEK   81 (171)
Q Consensus         2 ~~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~   81 (171)
                      +||++..+++.|+++++|+++.+++.+.+.+.......++++||++||++|||+++.++.++..++..++.++.      
T Consensus        36 ~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~------  109 (500)
T PRK09584         36 GYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG------  109 (500)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc------
Confidence            57899999999999999999999999999888888888889999999955999999999999999988877643      


Q ss_pred             CCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhH
Q 045901           82 PPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSAT  161 (171)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~  161 (171)
                                      .....+++++.++++|.|...|+..++++|+++++++     ++++.++++|+..|+|+++++.
T Consensus       110 ----------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~-----~~~~~~~~~~~~~~iG~~~gp~  168 (500)
T PRK09584        110 ----------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP-----RLDGAFTMYYMSINIGSFFSML  168 (500)
T ss_pred             ----------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch-----hhhhcchHHHHHHHHHHHHHHH
Confidence                            1234567888899999999999999999999975432     3567899999999999999999


Q ss_pred             HHHhhccccC
Q 045901          162 FIVYIQDNLG  171 (171)
Q Consensus       162 ~~~~i~~~~g  171 (171)
                      +.+++.++.|
T Consensus       169 i~g~l~~~~g  178 (500)
T PRK09584        169 ATPWLAAKYG  178 (500)
T ss_pred             HHHHHHHhhC
Confidence            9999988654

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.59  E-value=1.3e-14  Score=117.49  Aligned_cols=133  Identities=21%  Similarity=0.322  Sum_probs=114.3

Q ss_pred             HHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 045901            7 MPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCD   86 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~   86 (171)
                      ...++.++.+++|.++.+.+.+.+.+.....++.++.|+++||+ ||||.+.++.++..++.+++.++.           
T Consensus        16 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~-----------   83 (352)
T PF07690_consen   16 SPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLAFAS-----------   83 (352)
T ss_dssp             HHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhhhhh-----------
Confidence            34455588889999999999999999999999999999999998 999999999999999965555432           


Q ss_pred             ccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901           87 QMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI  166 (171)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i  166 (171)
                                  +.+.+++++++.|++.+...+...+++.|.+++++       |++.+++.....++|.++++.+.+++
T Consensus        84 ------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~g~~~g~~l~~~l  144 (352)
T PF07690_consen   84 ------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE-------RGRAFGILSAGFSLGSILGPLLGGFL  144 (352)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC-------HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ------------hHHHHhhhccccccccccccccccccccccchhhh-------hhhccccccchhhhhhhcccchhhhh
Confidence                        34578899999999999999999999999987632       68899999999999999999999988


Q ss_pred             cccc
Q 045901          167 QDNL  170 (171)
Q Consensus       167 ~~~~  170 (171)
                      .++.
T Consensus       145 ~~~~  148 (352)
T PF07690_consen  145 ISYF  148 (352)
T ss_dssp             CCHC
T ss_pred             hhcc
Confidence            7643

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK12382 putative transporter; Provisional

Probab=99.59  E-value=1.5e-14  Score=120.26  Aligned_cols=143  Identities=17%  Similarity=0.207  Sum_probs=114.5

Q ss_pred             cHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 045901            6 LMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVC   85 (171)
Q Consensus         6 v~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~   85 (171)
                      ..+.++.|+++++|+|+.+.+.+.+.+.....++.++.|+++||+ ||||.+.++.++..++.+........+...    
T Consensus        34 ~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~----  108 (392)
T PRK12382         34 PLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGLAGLAYLLAAILPVSA----  108 (392)
T ss_pred             HhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHHHHHHHHhhhccccch----
Confidence            345677789999999999999999999999999999999999998 999999999988877655433332111100    


Q ss_pred             cccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 045901           86 DQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVY  165 (171)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~  165 (171)
                                 ..+...+++++.+.|+|.+...+...+.+.|..+++       +|+++.+++..+.++|.++++.+.++
T Consensus       109 -----------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~-------~r~~a~~~~~~~~~~g~~~g~~~~~~  170 (392)
T PRK12382        109 -----------PFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPK-------HSGKVMSWNGMAMYGALAAGAPLGLL  170 (392)
T ss_pred             -----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc-------ccchhhhHHHHHHHHHHHHHHHHHHH
Confidence                       125677889999999999998888888888987532       26788888888999999999998888


Q ss_pred             hccccC
Q 045901          166 IQDNLG  171 (171)
Q Consensus       166 i~~~~g  171 (171)
                      +.+..|
T Consensus       171 l~~~~g  176 (392)
T PRK12382        171 LHSHFG  176 (392)
T ss_pred             HHhccC
Confidence            776543

>PRK10054 putative transporter; Provisional

Probab=99.58  E-value=2.8e-14  Score=119.68  Aligned_cols=135  Identities=16%  Similarity=0.185  Sum_probs=114.2

Q ss_pred             eeccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 045901            3 SNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKP   82 (171)
Q Consensus         3 ~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~   82 (171)
                      ++.+.++++.|+++++|+++.+++.+.+.+.....+..++.|+++||+ ||||.+.++.++..++.+++.+.+       
T Consensus        23 ~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~~~~~~~~~~~~-------   94 (395)
T PRK10054         23 RGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAFASGFIAIPLVN-------   94 (395)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHHHHHHHHHHHHh-------
Confidence            455678899999999999999999999999999999999999999997 999999999999988887776653       


Q ss_pred             CcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHH
Q 045901           83 PVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATF  162 (171)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~  162 (171)
                                      +.+.+++.+.+.+.+.+...+...+...|..+++       +|++.+++.+...|+|.++++.+
T Consensus        95 ----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~lg~~igp~l  151 (395)
T PRK10054         95 ----------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSST-------SKTKIFSLNYTMLNIGWTVGPPL  151 (395)
T ss_pred             ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHh-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence                            3455666667777777777888888888887532       37889999999999999999999


Q ss_pred             HHhhcc
Q 045901          163 IVYIQD  168 (171)
Q Consensus       163 ~~~i~~  168 (171)
                      .+++.+
T Consensus       152 ~~~l~~  157 (395)
T PRK10054        152 GTLLVM  157 (395)
T ss_pred             HHHHHH
Confidence            888754

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.57  E-value=3.6e-14  Score=119.18  Aligned_cols=135  Identities=17%  Similarity=0.217  Sum_probs=118.5

Q ss_pred             ceeccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 045901            2 ASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEK   81 (171)
Q Consensus         2 ~~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~   81 (171)
                      +++.+.+.++.|+++++|+|+.+.+.+.+.......+..+++|+++||+ ||||.+.++.++..++.+++...+      
T Consensus        25 ~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~~~~~~~------   97 (400)
T PRK11646         25 GFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFATMAIAH------   97 (400)
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHHHHHHhc------
Confidence            4567788899999999999999999999999999999999999999998 999999999999999988776543      


Q ss_pred             CCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhH
Q 045901           82 PPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSAT  161 (171)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~  161 (171)
                                       +.+.+++.+.+.+++.+...|...+.+.|..+++       +|+++.++.+...++|..+++.
T Consensus        98 -----------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-------~~~~a~~~~~~~~~~g~~ig~~  153 (400)
T PRK11646         98 -----------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPH-------QRGRFFSLLMMQDSAGAVIGAL  153 (400)
T ss_pred             -----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence                             4566788889999999989999999998887532       3788999999999999999999


Q ss_pred             HHHhhc
Q 045901          162 FIVYIQ  167 (171)
Q Consensus       162 ~~~~i~  167 (171)
                      +.+++.
T Consensus       154 l~g~l~  159 (400)
T PRK11646        154 LGSWLL  159 (400)
T ss_pred             HHHHHH
Confidence            988876

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.56  E-value=2.3e-15  Score=127.29  Aligned_cols=122  Identities=17%  Similarity=0.224  Sum_probs=112.9

Q ss_pred             HhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCc
Q 045901           16 REYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESA   95 (171)
Q Consensus        16 ~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~   95 (171)
                      +.+|.++...+.+-++|.+...+..++.|+++||| .||+++.+|..++.++.+...++.                    
T Consensus        61 ~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~iW~~Av~~~~fs~--------------------  119 (493)
T KOG1330|consen   61 TYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFIWTLAVFASGFSN--------------------  119 (493)
T ss_pred             HhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHHHHHHHHHHHHHH--------------------
Confidence            46899999999999999999999999999999999 999999999999999999888764                    


Q ss_pred             cchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 045901           96 TASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQD  168 (171)
Q Consensus        96 ~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~  168 (171)
                         ++|.+.+.|.+.|+|.+...|.++++++|.++++       +|++.+.|||+++++|+.+|+.+++++.+
T Consensus       120 ---~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~-------~Rs~~~~ify~~ipvGsglG~vvgs~va~  182 (493)
T KOG1330|consen  120 ---HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDD-------KRSRVLGIFYFAIPVGSGLGYVVGSVVAS  182 (493)
T ss_pred             ---HHHHHHHHHHHhccchhhhcccchhHhhhcCcch-------hhhHHHHHhhhhcccccceeEEeeeeecc
Confidence               6899999999999999999999999999999753       38999999999999999999888777655

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.56  E-value=9.5e-15  Score=121.71  Aligned_cols=100  Identities=42%  Similarity=0.745  Sum_probs=81.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCC
Q 045901           54 YPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGN  133 (171)
Q Consensus        54 ~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~  133 (171)
                      +|+++++.+++.+|.+++++++..+.. +             ++.+...+++|+.++++|.|+++|++.++++||+++++
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~~~~~~-~-------------~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~   66 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSAIPPSL-P-------------SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD   66 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHTSSSC--------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT
T ss_pred             CHhhhHHHHHHHHHHHHhHHHHhcchh-h-------------hhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc
Confidence            589999999999999999888733322 1             13356789999999999999999999999999999764


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhccccC
Q 045901          134 GAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG  171 (171)
Q Consensus       134 ~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~~g  171 (171)
                      +    ++++++|+|||+++|+|++++..+.+|+++++|
T Consensus        67 ~----~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~  100 (372)
T PF00854_consen   67 D----SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYG  100 (372)
T ss_dssp             T----THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-
T ss_pred             h----hhhhhhHHHHHHHHhhhhHhhcccchhhccccc
Confidence            3    258999999999999999999999999998765

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.56  E-value=3.6e-14  Score=118.14  Aligned_cols=142  Identities=16%  Similarity=0.146  Sum_probs=115.7

Q ss_pred             cHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 045901            6 LMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVC   85 (171)
Q Consensus         6 v~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~   85 (171)
                      ..+.++.|+++++|.|+.+.+.+.+.+.....++.++.|+++||+ ||||++.++.++..++.+.+.++......     
T Consensus        34 ~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~-----  107 (399)
T PRK05122         34 PLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCALSGLLYLLAGLLAAW-----  107 (399)
T ss_pred             HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHHHHHHHHHHhhhhhcc-----
Confidence            456788899999999999999999999999999999999999998 99999999999998887766554311100     


Q ss_pred             cccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 045901           86 DQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVY  165 (171)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~  165 (171)
                                ...+...+++.+++.|+|.+...+.....+.|..+++       +|++..+++....++|..+++.+.++
T Consensus       108 ----------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~l~~~  170 (399)
T PRK05122        108 ----------PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGAL-------HTGRVISWNGIATYGALAIGAPLGVL  170 (399)
T ss_pred             ----------chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChh-------hhccchhhhhhhhhHHHHHHHHHHHH
Confidence                      0113557888999999999999999999888987542       26778888888888998899888888


Q ss_pred             hcccc
Q 045901          166 IQDNL  170 (171)
Q Consensus       166 i~~~~  170 (171)
                      +.+..
T Consensus       171 l~~~~  175 (399)
T PRK05122        171 LYHWG  175 (399)
T ss_pred             HHHcc
Confidence            76644

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.55  E-value=1.3e-13  Score=113.65  Aligned_cols=131  Identities=14%  Similarity=0.147  Sum_probs=113.0

Q ss_pred             HHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 045901            8 PNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQ   87 (171)
Q Consensus         8 ~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~   87 (171)
                      ......+++++|+++.+.+.+.+.+.....++.++.|+++||+ ||||.+.++.++..++.+++.++.            
T Consensus        32 ~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------   98 (405)
T TIGR00891        32 ALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSIVLFSAGTLACGFAP------------   98 (405)
T ss_pred             HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc------------
Confidence            4445667789999999999999999999999999999999998 999999999999999988776543            


Q ss_pred             cccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 045901           88 MRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQ  167 (171)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~  167 (171)
                                 +++.+++.+++.|++.+...+...+++.|.++++       +|+++.+++....++|..+++.+.+.+.
T Consensus        99 -----------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~l~~~l~  160 (405)
T TIGR00891        99 -----------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH-------LRNKASGLLISGYAVGAVVAAQVYSLVV  160 (405)
T ss_pred             -----------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       4667888999999999999999999999988642       3688899999999999999988877765


Q ss_pred             cc
Q 045901          168 DN  169 (171)
Q Consensus       168 ~~  169 (171)
                      +.
T Consensus       161 ~~  162 (405)
T TIGR00891       161 PV  162 (405)
T ss_pred             Hh
Confidence            43

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.55  E-value=6.8e-14  Score=113.93  Aligned_cols=133  Identities=12%  Similarity=0.103  Sum_probs=116.1

Q ss_pred             HHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 045901            7 MPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCD   86 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~   86 (171)
                      .+...+++.+++|.++.+.+.+.+.+.....++.++.|+++||+ ||||.+.++.++..++.+++.++.           
T Consensus        13 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~-----------   80 (399)
T TIGR00893        13 LSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAG-----------   80 (399)
T ss_pred             hhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHc-----------
Confidence            34455678889999999999999999999999999999999998 999999999999999988776653           


Q ss_pred             ccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901           87 QMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI  166 (171)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i  166 (171)
                                  +.+.+++++++.|++.+...+...+++.|.+++       ++|++.+++.....++|.++++.+.+++
T Consensus        81 ------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l  141 (399)
T TIGR00893        81 ------------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPA-------SERATAVSIFNSAQGLGGIIGGPLVGWI  141 (399)
T ss_pred             ------------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCH-------HHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence                        467788999999999999999999999998753       2378899999999999999999988887


Q ss_pred             cccc
Q 045901          167 QDNL  170 (171)
Q Consensus       167 ~~~~  170 (171)
                      .++.
T Consensus       142 ~~~~  145 (399)
T TIGR00893       142 LIHF  145 (399)
T ss_pred             HHhC
Confidence            6543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.54  E-value=1.4e-13  Score=115.49  Aligned_cols=133  Identities=11%  Similarity=0.161  Sum_probs=115.0

Q ss_pred             HHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 045901            7 MPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCD   86 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~   86 (171)
                      .+.++. +.+++|+++.+.+...+.+.....++.++.|+++||+ ||||.+..+.++..++.+++.++.           
T Consensus        40 ~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~-----------  106 (394)
T PRK10213         40 VSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFAVLLTLSCLLVSFAN-----------  106 (394)
T ss_pred             HhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHHHHHHHHHHHHHHHC-----------
Confidence            334444 4468999999999999999999999999999999998 999999999999999888776543           


Q ss_pred             ccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901           87 QMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI  166 (171)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i  166 (171)
                                  +.+.+++.+.+.|++.|...|...+++.|.++++       +|+++..+.....++|.++++.+.+++
T Consensus       107 ------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~-------~~~~a~~~~~~~~~~g~~ig~~l~~~l  167 (394)
T PRK10213        107 ------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPR-------TVPKALSVIFGAVSIALVIAAPLGSFL  167 (394)
T ss_pred             ------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        5778899999999999999999999999988532       378899999999999999999999988


Q ss_pred             ccccC
Q 045901          167 QDNLG  171 (171)
Q Consensus       167 ~~~~g  171 (171)
                      .+..|
T Consensus       168 ~~~~g  172 (394)
T PRK10213        168 GELIG  172 (394)
T ss_pred             HhhcC
Confidence            77543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.54  E-value=2e-13  Score=114.48  Aligned_cols=132  Identities=13%  Similarity=0.172  Sum_probs=114.3

Q ss_pred             HHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 045901            8 PNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQ   87 (171)
Q Consensus         8 ~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~   87 (171)
                      ..+..++.+++|.|+.+.+.+.+.+.++..++.++.|+++||+ |||+++.++.++..++.+++.++.            
T Consensus        38 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~------------  104 (426)
T PRK12307         38 FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAYSVGTGLSGLAS------------  104 (426)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHh------------
Confidence            3444566789999999999999999999999999999999998 999999999999999998777654            


Q ss_pred             cccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 045901           88 MRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQ  167 (171)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~  167 (171)
                                 +.+.+++++.+.|+|.|...+....++.|.++++       +|+++.+++..+..+|.++++.+.+++.
T Consensus       105 -----------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~lg~~~~~~l~~~l~  166 (426)
T PRK12307        105 -----------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKH-------LKSKASAFLVSGFGIGNIIAAYFMPSFA  166 (426)
T ss_pred             -----------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHh-------HhhHhhhHHHHHHhHHHHHHHHHHHHHc
Confidence                       5678889999999999999999999999987542       3688888888999999999988888776


Q ss_pred             ccc
Q 045901          168 DNL  170 (171)
Q Consensus       168 ~~~  170 (171)
                      +..
T Consensus       167 ~~~  169 (426)
T PRK12307        167 EAY  169 (426)
T ss_pred             ccC
Confidence            643

>PRK03545 putative arabinose transporter; Provisional

Probab=99.53  E-value=1.3e-13  Score=114.76  Aligned_cols=128  Identities=12%  Similarity=0.072  Sum_probs=111.7

Q ss_pred             HHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccC
Q 045901           12 LYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSG   91 (171)
Q Consensus        12 ~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~   91 (171)
                      +.+.+++|.++.+.+.+.+.+.....++.++.|+++||+ ||||.+.++.++..++.+.+.+++                
T Consensus        33 ~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~----------------   95 (390)
T PRK03545         33 SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFIASHVLSALAW----------------   95 (390)
T ss_pred             HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHhc----------------
Confidence            456679999999999999999999999999999999998 999999999999999988776653                


Q ss_pred             CCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhcccc
Q 045901           92 CESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNL  170 (171)
Q Consensus        92 ~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~~  170 (171)
                             +.+.+++++++.|++.+...|...+++.|.++++       +|+++.+++....++|.++++.+.+.+.++.
T Consensus        96 -------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~  160 (390)
T PRK03545         96 -------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAG-------KKAQALSLLATGTALAMVLGLPLGRVIGQYL  160 (390)
T ss_pred             -------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh-------hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence                   5677889999999999999999999999987632       3788999999999999999998888876654

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.53  E-value=1.7e-13  Score=118.14  Aligned_cols=131  Identities=11%  Similarity=0.054  Sum_probs=114.1

Q ss_pred             HHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccc
Q 045901           11 ILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRS   90 (171)
Q Consensus        11 ~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~   90 (171)
                      .+.+.+++|.+..+.+++.+.+..+..++.++.|+++||+ ||||.+.++.++..++.+++..++               
T Consensus        29 ~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~~~~~~~~~a~---------------   92 (495)
T PRK14995         29 APTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFGLASLAAAFSP---------------   92 (495)
T ss_pred             HHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHcC---------------
Confidence            3455679999999999999999999999999999999998 999999999999999999887654               


Q ss_pred             CCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhcccc
Q 045901           91 GCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNL  170 (171)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~~  170 (171)
                              +.+.+++++.+.|+|.|+..|.....+.+.+.++      ++|+++++++....++|..+++.+.+++.++.
T Consensus        93 --------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~------~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~  158 (495)
T PRK14995         93 --------TASWLIATRALLAIGAAMIVPATLAGIRATFTEE------KQRNMALGVWAAVGSGGAAFGPLVGGILLEHF  158 (495)
T ss_pred             --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence                    4677899999999999999888887777766431      24889999999999999999999999998765


Q ss_pred             C
Q 045901          171 G  171 (171)
Q Consensus       171 g  171 (171)
                      |
T Consensus       159 g  159 (495)
T PRK14995        159 Y  159 (495)
T ss_pred             C
Confidence            4

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.53  E-value=1.7e-13  Score=115.56  Aligned_cols=129  Identities=12%  Similarity=0.021  Sum_probs=113.4

Q ss_pred             HHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 045901            8 PNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQ   87 (171)
Q Consensus         8 ~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~   87 (171)
                      ....+.+++++|+++.+.+.+.+.+..+..++.++.|+++||+ ||||.+..+.++..++.+++.++.            
T Consensus        28 ~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~------------   94 (412)
T TIGR02332        28 GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLWGIASTATMFAT------------   94 (412)
T ss_pred             HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHhc------------
Confidence            3455678899999999999999999999999999999999998 999999999999999998887754            


Q ss_pred             cccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 045901           88 MRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQ  167 (171)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~  167 (171)
                                 +.+.+++.+.+.|++.|...|....+++|.+++       ++|++..+++....++|.++++.+.+++.
T Consensus        95 -----------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~rg~~~~~~~~~~~~g~~~~~~~~~~l~  156 (412)
T TIGR02332        95 -----------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPA-------YFRARANALFMIAMPVTMALGLILSGYIL  156 (412)
T ss_pred             -----------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       456788999999999999999888888998863       23788889998999999999998888774

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.51  E-value=1.5e-13  Score=116.77  Aligned_cols=134  Identities=15%  Similarity=0.131  Sum_probs=116.2

Q ss_pred             HHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 045901            7 MPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCD   86 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~   86 (171)
                      .....+.+.+++|.++.+.+++.+.+..+..++.++.|+++||+ ||||.+.++.++..++.+++..+.           
T Consensus        21 ~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~-----------   88 (485)
T TIGR00711        21 VNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGSLLCGVAP-----------   88 (485)
T ss_pred             HHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHHHHHhCcC-----------
Confidence            33445666778999999999999999999999999999999998 999999999999999988776543           


Q ss_pred             ccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901           87 QMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI  166 (171)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i  166 (171)
                                  +...+.+++++.|++.|...+...+++.|.++++       +|+++++++....++|..+++.+.+++
T Consensus        89 ------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~~~~~l  149 (485)
T TIGR00711        89 ------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPE-------KRGRAMAIWGLTVLVAPALGPTLGGWI  149 (485)
T ss_pred             ------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHH-------HHHHHHHHHHHHHHHHhhhhhccHhHh
Confidence                        4667889999999999999999999999998532       378899999999999999999999988


Q ss_pred             ccccC
Q 045901          167 QDNLG  171 (171)
Q Consensus       167 ~~~~g  171 (171)
                      .++.|
T Consensus       150 ~~~~~  154 (485)
T TIGR00711       150 IENYH  154 (485)
T ss_pred             ccCcC
Confidence            77543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.51  E-value=2.6e-13  Score=110.09  Aligned_cols=137  Identities=12%  Similarity=0.057  Sum_probs=114.9

Q ss_pred             HHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 045901            7 MPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCD   86 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~   86 (171)
                      ...++.|.. +++.++.+.+.+.+.+.....++.++.|+++||+ ||||.+.++.++..++.+++......+        
T Consensus        19 ~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~--------   88 (365)
T TIGR00900        19 QVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVLPFVALLG--------   88 (365)
T ss_pred             HHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHHHHHHHcC--------
Confidence            345566665 6899999999999999999999999999999998 999999999999888887776654211        


Q ss_pred             ccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901           87 QMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI  166 (171)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i  166 (171)
                                +.+.+.+++++.+.+++.+...|...++++|.++++       +|++.++++....++|.++++.+.+++
T Consensus        89 ----------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~g~~l~~~l  151 (365)
T TIGR00900        89 ----------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE-------QLTQANSLSQAVRSLFYIVGPGIGGLM  151 (365)
T ss_pred             ----------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence                      114677888999999999999999999999988542       378899999999999999999988887


Q ss_pred             cccc
Q 045901          167 QDNL  170 (171)
Q Consensus       167 ~~~~  170 (171)
                      .+..
T Consensus       152 ~~~~  155 (365)
T TIGR00900       152 YATL  155 (365)
T ss_pred             HHHh
Confidence            6543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.51  E-value=4.8e-13  Score=107.50  Aligned_cols=133  Identities=20%  Similarity=0.331  Sum_probs=115.0

Q ss_pred             ccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 045901            5 GLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPV   84 (171)
Q Consensus         5 gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~   84 (171)
                      .....++.|. +++|.++.+.+.+.........++.++.|+++||+ ||||.+.++.++..++.+++....         
T Consensus        17 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~~~~~~---------   85 (352)
T cd06174          17 LLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLLLAFAS---------   85 (352)
T ss_pred             hhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHHHHHhc---------
Confidence            3445556665 46799999999999999999999999999999998 999999999999999988776643         


Q ss_pred             ccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045901           85 CDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIV  164 (171)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~  164 (171)
                                    +.+.+++.+.+.+++.+...+...++..|.++++       +|++.+++.+...++|..+++.+.+
T Consensus        86 --------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~  144 (352)
T cd06174          86 --------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK-------ERGRALGLFSAGFGLGALLGPLLGG  144 (352)
T ss_pred             --------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCcc-------chhhhhhHHHHHHHHHHHHHHHHHH
Confidence                          4677888999999999999999999999998652       2688899999999999999999988


Q ss_pred             hhccc
Q 045901          165 YIQDN  169 (171)
Q Consensus       165 ~i~~~  169 (171)
                      ++.++
T Consensus       145 ~~~~~  149 (352)
T cd06174         145 LLAES  149 (352)
T ss_pred             HHHHH
Confidence            88764

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.51  E-value=2.4e-13  Score=112.95  Aligned_cols=132  Identities=11%  Similarity=0.022  Sum_probs=112.5

Q ss_pred             ccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 045901            5 GLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPV   84 (171)
Q Consensus         5 gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~   84 (171)
                      .+.+.+|.|++ ++|.|+.+++.+.+.+..+..++.++.|+++||+ ||||.+.++.++..++...+.+++         
T Consensus        24 ~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~~~~~~~~~~~---------   92 (381)
T PRK03633         24 VLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFAAGCAGLGLMV---------   92 (381)
T ss_pred             hHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence            34566777776 7899999999999999999999999999999998 999999999999999988776643         


Q ss_pred             ccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045901           85 CDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIV  164 (171)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~  164 (171)
                                    +.+.+++.+++.|++.+...|...+.+.|..++       ++|++.++++....++|..+++.+.+
T Consensus        93 --------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~g~~~~~  151 (381)
T PRK03633         93 --------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTS-------RNRGRLLAAYMMVYYLGTVLGQLLVS  151 (381)
T ss_pred             --------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                          467788899999999999888887777776542       13688889999999999999999888


Q ss_pred             hhcc
Q 045901          165 YIQD  168 (171)
Q Consensus       165 ~i~~  168 (171)
                      ++.+
T Consensus       152 ~l~~  155 (381)
T PRK03633        152 KVST  155 (381)
T ss_pred             cccc
Confidence            8765

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.50  E-value=3.9e-13  Score=112.54  Aligned_cols=127  Identities=14%  Similarity=0.152  Sum_probs=109.9

Q ss_pred             HHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccc
Q 045901           11 ILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRS   90 (171)
Q Consensus        11 ~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~   90 (171)
                      .+.+.+++|+|+.+.+.+.+.+..+..++.++.|+++||+ ||||++..+..+..++.+++.+++               
T Consensus        32 lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a~---------------   95 (393)
T PRK09705         32 LPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELYP---------------   95 (393)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHCc---------------
Confidence            3456679999999999999999999999999999999998 999999999999999999888764               


Q ss_pred             CCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 045901           91 GCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDN  169 (171)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~  169 (171)
                              +.+.+++++++.|+|.|...+..+..+.|.++ +       +|+++.+.+..+.++|..+++.+.+++.++
T Consensus        96 --------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~-------~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~  158 (393)
T PRK09705         96 --------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-Q-------RTPLVMGLWSAALMGGGGLGAAITPWLVQH  158 (393)
T ss_pred             --------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-c-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                    45678889999999999999999988888764 1       257888888888888888888888876653

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.50  E-value=3.7e-13  Score=110.61  Aligned_cols=128  Identities=16%  Similarity=0.127  Sum_probs=111.7

Q ss_pred             HHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccC
Q 045901           12 LYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSG   91 (171)
Q Consensus        12 ~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~   91 (171)
                      +.+.+++|.|+.+.+.+.+.+..+..++.++.|+++||+ ||||.+.++.++..++.+++..++                
T Consensus        29 p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~----------------   91 (385)
T TIGR00710        29 PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFALSSLGLALSN----------------   91 (385)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHHHHHHHHHHHc----------------
Confidence            446678999999999999999999999999999999998 999999999999999988776653                


Q ss_pred             CCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhcccc
Q 045901           92 CESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNL  170 (171)
Q Consensus        92 ~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~~  170 (171)
                             +.+.+++.+++.+++.+...+...+++.|.++++       +|++.+++.+...++|..+++.+.+++.+..
T Consensus        92 -------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  156 (385)
T TIGR00710        92 -------NIETLLVLRFVQAFGASAGSVISQALVRDIYPGE-------ELSRIYSILMPVLALAPAVAPLLGGYILVWL  156 (385)
T ss_pred             -------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                   4567888899999999999999999999988632       3788999999999999999999888876643

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.50  E-value=1.6e-13  Score=111.75  Aligned_cols=129  Identities=14%  Similarity=0.162  Sum_probs=110.3

Q ss_pred             HHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccc
Q 045901            9 NMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQM   88 (171)
Q Consensus         9 ~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~   88 (171)
                      ...+++.+++|+++.+.+.+.+.+.....++.++.|+++||+ ||||.+.++.++..++.+++.++.             
T Consensus        16 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~-------------   81 (379)
T TIGR00881        16 LAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST-------------   81 (379)
T ss_pred             hhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh-------------
Confidence            445678889999999999999999999999999999999998 999999999999999988877654             


Q ss_pred             ccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHh-HHHHhhc
Q 045901           89 RSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSA-TFIVYIQ  167 (171)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~-~~~~~i~  167 (171)
                                +.+.+++.+++.+++.|...+...+++.|.++++       +|++..++.....++|..+++ .+...+.
T Consensus        82 ----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  144 (379)
T TIGR00881        82 ----------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRS-------ERGTWVSFWNCSHNVGGGLLPPLVLFGIA  144 (379)
T ss_pred             ----------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHh-------hheeeEeehhccchhHHHHHHHHHHHHHH
Confidence                      4677888999999999999999999999998642       267788888888889988888 4555444


Q ss_pred             c
Q 045901          168 D  168 (171)
Q Consensus       168 ~  168 (171)
                      +
T Consensus       145 ~  145 (379)
T TIGR00881       145 E  145 (379)
T ss_pred             h
Confidence            3

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.49  E-value=8.2e-13  Score=111.66  Aligned_cols=135  Identities=13%  Similarity=0.118  Sum_probs=111.7

Q ss_pred             ccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 045901            5 GLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPV   84 (171)
Q Consensus         5 gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~   84 (171)
                      ++...+.+.+++++|+++.+++.+.+.+..+..++.++.|++.||+ ||||++.++.++..++.+++..+..        
T Consensus        20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~~l~~~~~~--------   90 (410)
T TIGR00885        20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGAFLFWPAAE--------   90 (410)
T ss_pred             HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHh--------
Confidence            3444556777889999999999999999999999999999999998 9999999999999999887654431        


Q ss_pred             ccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045901           85 CDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIV  164 (171)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~  164 (171)
                                  ..+++.+++++++.|+|.|...+..++++.+..+++       ++++..++.....++|..+++.+.+
T Consensus        91 ------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~lG~~~g~~i~~  151 (410)
T TIGR00885        91 ------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPES-------TATRRLNLAQSFNPFGSIIGMVVAQ  151 (410)
T ss_pred             ------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHh-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        115678889999999999999999999999875432       2455677777788899888888777


Q ss_pred             hhc
Q 045901          165 YIQ  167 (171)
Q Consensus       165 ~i~  167 (171)
                      .+.
T Consensus       152 ~l~  154 (410)
T TIGR00885       152 QLI  154 (410)
T ss_pred             HHH
Confidence            663

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00895 2A0115 benzoate transport

Probab=99.48  E-value=5e-13  Score=109.64  Aligned_cols=132  Identities=11%  Similarity=0.080  Sum_probs=112.8

Q ss_pred             HHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 045901            8 PNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQ   87 (171)
Q Consensus         8 ~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~   87 (171)
                      ....+++.+++|+++.+++.+.+.......++.++.|+++||+ |||+.+..+.++..++.+++....            
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~------------  103 (398)
T TIGR00895        37 GFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLFSVFTLLCALAT------------  103 (398)
T ss_pred             HhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHcc------------
Confidence            3445666778999999999999999999999999999999998 999999999999998887765542            


Q ss_pred             cccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 045901           88 MRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQ  167 (171)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~  167 (171)
                                 +.+.+++.+++.+++.+...+...++++|.++++       +|++..+++....++|..+++.+.+++.
T Consensus       104 -----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~l~  165 (398)
T TIGR00895       104 -----------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKR-------FRGTAVGLMFCGYPIGAAVGGFLAGWLI  165 (398)
T ss_pred             -----------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHH-------hhchhHhhHhhHHHHHHHHHHHHHHHHh
Confidence                       4566788899999999999999999999987532       3688888988999999999999988887


Q ss_pred             ccc
Q 045901          168 DNL  170 (171)
Q Consensus       168 ~~~  170 (171)
                      ++.
T Consensus       166 ~~~  168 (398)
T TIGR00895       166 PVF  168 (398)
T ss_pred             hcc
Confidence            654

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.48  E-value=6.9e-13  Score=107.93  Aligned_cols=129  Identities=19%  Similarity=0.190  Sum_probs=107.3

Q ss_pred             HHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 045901            7 MPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCD   86 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~   86 (171)
                      ...+.+++.+++|+|+.+.+.+.+.+.++..++.++.|+++||+ ||||.+.++.++..++.+++.++.           
T Consensus        22 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~-----------   89 (377)
T TIGR00890        22 WTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIAD-----------   89 (377)
T ss_pred             hhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHHH-----------
Confidence            34567888889999999999999999999999999999999998 999999999999999998887764           


Q ss_pred             ccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901           87 QMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI  166 (171)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i  166 (171)
                                  +.+.+++++.+.|++.|...+...+...|.+++        +|+++.+++....++|.++++.+.+.+
T Consensus        90 ------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~~~~~~~~  149 (377)
T TIGR00890        90 ------------SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD--------KRGLASGIIIGGYGLGSFILSPLITSV  149 (377)
T ss_pred             ------------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc--------ccHHHHHHHHHhcchhHhHHHHHHHHH
Confidence                        567788888999999998877777777776632        257788888888888887655555444


Q ss_pred             c
Q 045901          167 Q  167 (171)
Q Consensus       167 ~  167 (171)
                      .
T Consensus       150 ~  150 (377)
T TIGR00890       150 I  150 (377)
T ss_pred             H
Confidence            3

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.48  E-value=9e-13  Score=109.83  Aligned_cols=129  Identities=15%  Similarity=0.099  Sum_probs=110.2

Q ss_pred             HHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccc
Q 045901           10 MILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMR   89 (171)
Q Consensus        10 l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~   89 (171)
                      ..+.+.+++|+++.+.+.+.+.+.++..++.++.|+++||+ ||||.+..+.++..++.+++.++.              
T Consensus        37 ~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~--------------  101 (406)
T PRK11551         37 AAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVALFGLFSLATAQAW--------------  101 (406)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHHhc--------------
Confidence            33456678999999999999999999999999999999998 999999999999888877665543              


Q ss_pred             cCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 045901           90 SGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDN  169 (171)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~  169 (171)
                               +.+.+++.+++.|++.+...+...+++.|.++++       +|++..++++...++|.++++.+...+.+.
T Consensus       102 ---------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  165 (406)
T PRK11551        102 ---------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPR-------LRGTAVSLMYCGVPFGGALASVIGVLAAGD  165 (406)
T ss_pred             ---------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence                     4567888899999999999999999999988532       378899999999999999998887766554

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.48  E-value=7.1e-13  Score=119.52  Aligned_cols=129  Identities=13%  Similarity=0.059  Sum_probs=110.8

Q ss_pred             HHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 045901            7 MPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCD   86 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~   86 (171)
                      ...+.+.+.+++|+++.+.+.+.+++.++..++.+++|+++||+ |||+.+++++++..++.+++.++.           
T Consensus       186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa~-----------  253 (742)
T TIGR01299       186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFVQ-----------  253 (742)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence            44566777789999999999999999999999999999999998 999999999999999988777654           


Q ss_pred             ccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901           87 QMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI  166 (171)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i  166 (171)
                                  +.+.+++++++.|+|.|+..|....+++|.+++       +.|++.+++......+|.++++.+..++
T Consensus       254 ------------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~-------~~Rg~~~g~~~~~~~iG~ila~~la~~i  314 (742)
T TIGR01299       254 ------------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQ-------EKRGEHLSWLCMFWMIGGIYAAAMAWAI  314 (742)
T ss_pred             ------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        467788999999999999999999999998853       2378888888888888888887655444

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.47  E-value=9.7e-13  Score=109.85  Aligned_cols=133  Identities=11%  Similarity=0.036  Sum_probs=103.3

Q ss_pred             HHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 045901            7 MPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCD   86 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~   86 (171)
                      .....+.+++++|+|+.+.+.+.+.+..+..++.++.|+++||+ |||+++..+......+.+ .....           
T Consensus        10 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~-~~~~~-----------   76 (368)
T TIGR00903        10 FSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAG-RLLDP-----------   76 (368)
T ss_pred             HHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH-HHHHh-----------
Confidence            34455666779999999999999999999999999999999998 999987666555544432 22221           


Q ss_pred             ccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901           87 QMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI  166 (171)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i  166 (171)
                                 .+...+++.|++.|+|.|.. ++.....+|.+++       ++|+++.++...+.++|.++++.+.+++
T Consensus        77 -----------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~-------~~r~~a~~~~~~~~~lG~~l~~~~~~~l  137 (368)
T TIGR00903        77 -----------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIRE-------ERRDLVISLLSFAMYLGIIFALAAGLKI  137 (368)
T ss_pred             -----------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       14678999999999999864 4555556787753       2378999999999999999999999988


Q ss_pred             ccccC
Q 045901          167 QDNLG  171 (171)
Q Consensus       167 ~~~~g  171 (171)
                      .++.|
T Consensus       138 ~~~~g  142 (368)
T TIGR00903       138 YTAGG  142 (368)
T ss_pred             HHccc
Confidence            76543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.47  E-value=1.2e-12  Score=110.88  Aligned_cols=129  Identities=10%  Similarity=0.104  Sum_probs=110.7

Q ss_pred             HHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccC
Q 045901           12 LYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSG   91 (171)
Q Consensus        12 ~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~   91 (171)
                      +.+.+++|+|+.+++.+.+.+.++..++.+++|+++||+ |||+.+.++.++..++.+++.++.                
T Consensus        47 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~----------------  109 (434)
T PRK11663         47 PEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIINILFGFSS----------------  109 (434)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHHHHHHHHh----------------
Confidence            344457999999999999999999999999999999998 999999999999999988776653                


Q ss_pred             CCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhccccC
Q 045901           92 CESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG  171 (171)
Q Consensus        92 ~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~~g  171 (171)
                             +.+.+++.+++.+++.|...+.....+.|.++++       +|++..++++...++|..+++.+.+++.+..|
T Consensus       110 -------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~-------~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g  175 (434)
T PRK11663        110 -------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRT-------ERGGWWAIWNTAHNVGGALIPLVVGAIALHYG  175 (434)
T ss_pred             -------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence                   4566777788899999988899999999988532       37889999999999999999998888876543

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.47  E-value=1e-12  Score=112.25  Aligned_cols=132  Identities=14%  Similarity=0.140  Sum_probs=114.4

Q ss_pred             HHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 045901            8 PNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQ   87 (171)
Q Consensus         8 ~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~   87 (171)
                      ..+..++.+++|+++.+++.+.+.+.++..++.+++|+++||+ ||||.+.++.++..++.+++.++.            
T Consensus        40 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------  106 (496)
T PRK03893         40 TLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVLFSVGTLACGFAP------------  106 (496)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHh------------
Confidence            3445667789999999999999999999999999999999998 999999999999999988877653            


Q ss_pred             cccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 045901           88 MRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQ  167 (171)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~  167 (171)
                                 +.+.+++.+.+.|++.+...+...+++.|.+++       ++|++..++++...++|.++++.+.+++.
T Consensus       107 -----------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  168 (496)
T PRK03893        107 -----------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPK-------HLRNKASGFLISGFSIGAVVAAQVYSLVV  168 (496)
T ss_pred             -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                       467788899999999999999999999998853       23788888888999999999999888876


Q ss_pred             ccc
Q 045901          168 DNL  170 (171)
Q Consensus       168 ~~~  170 (171)
                      ++.
T Consensus       169 ~~~  171 (496)
T PRK03893        169 PVW  171 (496)
T ss_pred             ccC
Confidence            644

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.47  E-value=9.5e-13  Score=107.76  Aligned_cols=132  Identities=14%  Similarity=0.105  Sum_probs=105.6

Q ss_pred             ccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 045901            5 GLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPV   84 (171)
Q Consensus         5 gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~   84 (171)
                      ...+.+|.++++++|+|+.+.+.+.+.+.....++.++.|+++||+ ||||.+.++.++..++.+++.++.         
T Consensus        19 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~~~~~~~~---------   88 (366)
T TIGR00886        19 AFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPCLWAGLAV---------   88 (366)
T ss_pred             HhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHh---------
Confidence            3444555578899999999999999999999999999999999998 999999999999999988776653         


Q ss_pred             ccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045901           85 CDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIV  164 (171)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~  164 (171)
                                   .+.+.+++++++.|++.+.. +...++++|.++++       +|++..+++....++|..+++.+.+
T Consensus        89 -------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~i~~  147 (366)
T TIGR00886        89 -------------QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKK-------IQGTALGLAAGWGNMGGGVAQFVMP  147 (366)
T ss_pred             -------------hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHh-------hhhHHHHHHHHHhHHHHHHHHHHHH
Confidence                         03567788899999986654 56788889987542       2677888877777777777766655


Q ss_pred             hhc
Q 045901          165 YIQ  167 (171)
Q Consensus       165 ~i~  167 (171)
                      .+.
T Consensus       148 ~l~  150 (366)
T TIGR00886       148 PII  150 (366)
T ss_pred             HHH
Confidence            543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.47  E-value=8.3e-13  Score=108.79  Aligned_cols=132  Identities=14%  Similarity=0.153  Sum_probs=112.8

Q ss_pred             HHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 045901            7 MPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCD   86 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~   86 (171)
                      .+.++.+. +++|+++.+++.+.+.+.....++.+++|+++||+ |||+.+..+.++..++..++..+.           
T Consensus        11 ~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~-----------   77 (377)
T PRK11102         11 LPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQ-----------   77 (377)
T ss_pred             hccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHc-----------
Confidence            35566666 47999999999999999999999999999999998 999999999999999988776643           


Q ss_pred             ccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901           87 QMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI  166 (171)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i  166 (171)
                                  +.+.+++.+++.+++.+...+...+++.|.++++       +|++..++.+...++|..+++.+.+++
T Consensus        78 ------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~l  138 (377)
T PRK11102         78 ------------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKE-------EFSRMMSFVTLVMTIAPLLAPIIGGWL  138 (377)
T ss_pred             ------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        3566788889999999999999999999987532       378889999999999999999988887


Q ss_pred             cccc
Q 045901          167 QDNL  170 (171)
Q Consensus       167 ~~~~  170 (171)
                      .+..
T Consensus       139 ~~~~  142 (377)
T PRK11102        139 LVWF  142 (377)
T ss_pred             HHHc
Confidence            6643

>PRK10504 putative transporter; Provisional

Probab=99.47  E-value=6.4e-13  Score=113.08  Aligned_cols=135  Identities=11%  Similarity=0.082  Sum_probs=113.4

Q ss_pred             eccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 045901            4 NGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPP   83 (171)
Q Consensus         4 ~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~   83 (171)
                      +.+.+.+|.|.+ ++|.++.+.+.+.+.+.++..++.++.|+++||+ ||||.+..+.++..++.+++.++.        
T Consensus        27 ~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~--------   96 (471)
T PRK10504         27 TIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFTLGSLFCALSG--------   96 (471)
T ss_pred             HHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHhC--------
Confidence            344556666664 7999999999999999999999999999999998 999999999999988887665432        


Q ss_pred             cccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 045901           84 VCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFI  163 (171)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~  163 (171)
                                     +.+.+++++++.|+|.|...|.....+.|.+++       +++.+.+++.....++|..+++.+.
T Consensus        97 ---------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~g~~~~  154 (471)
T PRK10504         97 ---------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPR-------EQYMAAMTFVTLPGQVGPLLGPALG  154 (471)
T ss_pred             ---------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHhhhHHH
Confidence                           356678889999999999999999999998742       2378889999999999999999999


Q ss_pred             Hhhcccc
Q 045901          164 VYIQDNL  170 (171)
Q Consensus       164 ~~i~~~~  170 (171)
                      +++.++.
T Consensus       155 g~l~~~~  161 (471)
T PRK10504        155 GLLVEYA  161 (471)
T ss_pred             HHHHhhc
Confidence            8887654

>PRK11043 putative transporter; Provisional

Probab=99.46  E-value=1.1e-12  Score=109.50  Aligned_cols=127  Identities=16%  Similarity=0.167  Sum_probs=105.9

Q ss_pred             hhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCC
Q 045901           14 LCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCE   93 (171)
Q Consensus        14 l~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~   93 (171)
                      +++++|.++.+++.+.+.+..+..++.++.|+++||+ ||||.+..+.++..++.+++.++.                  
T Consensus        32 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------------   92 (401)
T PRK11043         32 IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVE------------------   92 (401)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhc------------------
Confidence            6679999999999999999999999999999999998 999999999999998887776543                  


Q ss_pred             CccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhccccC
Q 045901           94 SATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG  171 (171)
Q Consensus        94 ~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~~g  171 (171)
                           +.+.+++.+.+.|++.+...+...+++.|.++++       ++.+.++......++|..+++.+.+++.+..|
T Consensus        93 -----~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g  158 (401)
T PRK11043         93 -----SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ-------KANRVFATIMPLVALSPALAPLLGAWLLNHFG  158 (401)
T ss_pred             -----CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                 4567788889999998888888888888887532       25666777777788888899988888876543

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.46  E-value=8.5e-13  Score=109.83  Aligned_cols=128  Identities=9%  Similarity=0.153  Sum_probs=108.8

Q ss_pred             HHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccC
Q 045901           12 LYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSG   91 (171)
Q Consensus        12 ~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~   91 (171)
                      +.+.+++|.++.+.+.+.+.+..+..++.++.|+++||+ ||||.+.++.++..++.+++.++.                
T Consensus        27 ~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~l~~~~~----------------   89 (382)
T PRK10091         27 TELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVIGNAMFTLSS----------------   89 (382)
T ss_pred             HHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHHHHHHHHHhC----------------
Confidence            456678999999999999999999999999999999998 999999999999999998776653                


Q ss_pred             CCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhcccc
Q 045901           92 CESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNL  170 (171)
Q Consensus        92 ~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~~  170 (171)
                             +.+.+++.+++.|++.|...+.....+.|.++++       +|++..+++....++|..+++.+.+++.+..
T Consensus        90 -------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~  154 (382)
T PRK10091         90 -------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPG-------KVTAAVAGMVSGMTVANLLGIPLGTYLSQEF  154 (382)
T ss_pred             -------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChH-------HhhHHHHHHHHHHHHHHHHhccHHHHHhhhc
Confidence                   4677889999999999988888888888876431       2567788888888899999888888776644

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.45  E-value=1.6e-12  Score=109.72  Aligned_cols=126  Identities=14%  Similarity=0.120  Sum_probs=106.9

Q ss_pred             hhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCC
Q 045901           14 LCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCE   93 (171)
Q Consensus        14 l~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~   93 (171)
                      +.++++.+..+++..++.+..+..++.++.|+++||+ ||||++..+.++..++.+++..++                  
T Consensus        42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~------------------  102 (413)
T PRK15403         42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTT------------------  102 (413)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcC------------------
Confidence            4568999999999999999999999999999999998 999999999999999988776653                  


Q ss_pred             CccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhcccc
Q 045901           94 SATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNL  170 (171)
Q Consensus        94 ~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~~  170 (171)
                           +...+++++++.|++.+...+.....+.|.++++       ++.+..+++....++|..+++.+++++.+..
T Consensus       103 -----~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~  167 (413)
T PRK15403        103 -----SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQT-------KGIKLMAIITSIVLVAPIIGPLSGAALMHFV  167 (413)
T ss_pred             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                 4677889999999998877677777788877532       2677788888899999999998888877643

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.44  E-value=1.5e-12  Score=109.19  Aligned_cols=122  Identities=19%  Similarity=0.199  Sum_probs=105.9

Q ss_pred             HhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCC
Q 045901           13 YLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGC   92 (171)
Q Consensus        13 yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~   92 (171)
                      .+..+++.++.+.+++.+.+.....+..+++|+++||+ ||||++.++.++..++.+++..+.                 
T Consensus        28 ~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~~~~~~~~~-----------------   89 (393)
T PRK11195         28 ALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLGCLLMLFGI-----------------   89 (393)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHHHHHHHHHH-----------------
Confidence            34568899999999999999999999999999999998 999999999999998887665432                 


Q ss_pred             CCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 045901           93 ESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQD  168 (171)
Q Consensus        93 ~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~  168 (171)
                            +   .++.++++|++.+...|...+++.|.++++       +|.++.++.....++|.++|+.+++++.+
T Consensus        90 ------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~-------~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~  149 (393)
T PRK11195         90 ------H---PLLAYGLVGIGAAAYSPAKYGILTELLPGE-------KLVKANGWMEGSTIAAILLGTVLGGALAD  149 (393)
T ss_pred             ------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  2   256778999999999999999999998642       47899999999999999999999888765

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.44  E-value=1.7e-12  Score=106.40  Aligned_cols=138  Identities=14%  Similarity=0.123  Sum_probs=101.9

Q ss_pred             eccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHH-HHHHHHHHHHHHHHhhhcCCCCC
Q 045901            4 NGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGF-GCIISLLGMVLLWFTAIFPQEKP   82 (171)
Q Consensus         4 ~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~-~~~l~~lg~~ll~~~~~~~~~~~   82 (171)
                      ....+.+++|+++++|.|+.+.+.+.+.+.+...+..++.|+++||+ ||||.+.+ +.++..++.+++..++       
T Consensus        14 ~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~-------   85 (375)
T TIGR00899        14 ALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLFAWNR-------   85 (375)
T ss_pred             HHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHHHhcc-------
Confidence            34567888999999999999999999999999999999999999998 99887654 5555555655554432       


Q ss_pred             CcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHH
Q 045901           83 PVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATF  162 (171)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~  162 (171)
                                      +++.+++.+.+.+.+.+...|...++..|..++++     +.+....++.....++|..+++.+
T Consensus        86 ----------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~ig~~~  144 (375)
T TIGR00899        86 ----------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG-----REAVMFSSVMRAQISLAWVIGPPL  144 (375)
T ss_pred             ----------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc-----hhhHHHHHHHHHHHhHHHHHhhhH
Confidence                            45566666777777777777777777777653211     112233566677788999999998


Q ss_pred             HHhhcccc
Q 045901          163 IVYIQDNL  170 (171)
Q Consensus       163 ~~~i~~~~  170 (171)
                      .+++.+..
T Consensus       145 ~~~l~~~~  152 (375)
T TIGR00899       145 AFWLALGF  152 (375)
T ss_pred             HHHHHHhc
Confidence            88887644

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.44  E-value=2.6e-12  Score=106.80  Aligned_cols=128  Identities=15%  Similarity=0.147  Sum_probs=108.1

Q ss_pred             HHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccC
Q 045901           12 LYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSG   91 (171)
Q Consensus        12 ~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~   91 (171)
                      +.+.+++|.|+.+.+.+.+.+.....++.++.|+++||+ ||||.+.++.++..++.+++..+.                
T Consensus        27 p~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~~~~~~----------------   89 (392)
T PRK10473         27 PRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLLCSLAE----------------   89 (392)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHHHHHhC----------------
Confidence            445578999999999999999999999999999999998 999999999999999987776543                


Q ss_pred             CCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhcccc
Q 045901           92 CESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNL  170 (171)
Q Consensus        92 ~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~~  170 (171)
                             +...+++++.+.+++.+...+...+++.|.++++       +|.+..++.+...++|..+++.+.+++.+..
T Consensus        90 -------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~  154 (392)
T PRK10473         90 -------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDR-------RRAKVLSLLNGITCIIPVLAPVLGHLIMLKF  154 (392)
T ss_pred             -------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence                   3556778889999999998898999999987532       3788888888899999999998888776543

>TIGR00896 CynX cyanate transporter

Probab=99.42  E-value=3.7e-12  Score=104.62  Aligned_cols=129  Identities=14%  Similarity=0.179  Sum_probs=105.6

Q ss_pred             HHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 045901            7 MPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCD   86 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~   86 (171)
                      ...+.+.+.+++|+|+.+++.+.+.+..+..++.++.|+++||+ ||||.+.++.++..++.+.. .+.           
T Consensus        19 ~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~~-----------   85 (355)
T TIGR00896        19 VGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SAP-----------   85 (355)
T ss_pred             CcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hhc-----------
Confidence            33445566779999999999999999999999999999999998 99999999999888877655 221           


Q ss_pred             ccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901           87 QMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI  166 (171)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i  166 (171)
                                  +.+.+++.+++.++|.+...+..+....|.+++        +|++..+++....++|..+++.+.+++
T Consensus        86 ------------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~i~~~~~~~l  145 (355)
T TIGR00896        86 ------------GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ--------RVGLMTGLYSMALMGGAALAAAATVPL  145 (355)
T ss_pred             ------------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc--------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        345677889999999999888888888776531        267888888889999999988877776


Q ss_pred             cc
Q 045901          167 QD  168 (171)
Q Consensus       167 ~~  168 (171)
                      .+
T Consensus       146 ~~  147 (355)
T TIGR00896       146 AQ  147 (355)
T ss_pred             HH
Confidence            54

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.41  E-value=5.2e-12  Score=106.87  Aligned_cols=138  Identities=17%  Similarity=0.144  Sum_probs=100.7

Q ss_pred             cHHHHHHHhhHhhC---CChHHHHHH---HHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCC
Q 045901            6 LMPNMILYLCREYN---METTAATNV---LFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQ   79 (171)
Q Consensus         6 v~~~l~~yl~~~lg---~s~~~a~~~---~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~   79 (171)
                      +.+.+.+++.++++   .++.+.+..   .....++..++.+++|+++||+ ||||++.++.++..++.+++.++..+..
T Consensus        40 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~  118 (432)
T PRK10406         40 VYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVCMMCFGSLVIACLPGYET  118 (432)
T ss_pred             HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHhhcCCchh
Confidence            35566678888874   555544333   3344455558899999999998 9999999999999999988876541100


Q ss_pred             CCCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 045901           80 EKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLS  159 (171)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~  159 (171)
                      .               ...+...+++.|++.|+|.|+..|...++++|..+++       +|+++.++.+...+.|.+++
T Consensus       119 ~---------------~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~-------~rg~~~~~~~~~~~~G~~~~  176 (432)
T PRK10406        119 I---------------GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEG-------RKGFYASFQYVTLIGGQLLA  176 (432)
T ss_pred             H---------------HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCC-------cccHHHHHHHHHHHHHHHHH
Confidence            0               0113456888999999999999999999999988643       25777788778888888887


Q ss_pred             hHHHHhh
Q 045901          160 ATFIVYI  166 (171)
Q Consensus       160 ~~~~~~i  166 (171)
                      +.+...+
T Consensus       177 ~~~~~~~  183 (432)
T PRK10406        177 LLVVVVL  183 (432)
T ss_pred             HHHHHHH
Confidence            7654443

>PRK10133 L-fucose transporter; Provisional

Probab=99.41  E-value=5.9e-12  Score=107.30  Aligned_cols=130  Identities=13%  Similarity=0.134  Sum_probs=103.7

Q ss_pred             HHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccc
Q 045901            9 NMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQM   88 (171)
Q Consensus         9 ~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~   88 (171)
                      .+.+.+++++|.|+.+++.+.+.+..+..++.++.|++.||+ ||||++.++.+++.++.+++..+..            
T Consensus        47 ~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~~~~~l~~~~~~------------  113 (438)
T PRK10133         47 ILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAALFWPAAE------------  113 (438)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHh------------
Confidence            344556889999999999999999999999999999999998 9999999999999999987643221            


Q ss_pred             ccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901           89 RSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI  166 (171)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i  166 (171)
                              ..+++.++++++++|+|.|...+..+++++|..++ +      ++....+.+.....+|..+++.+.+.+
T Consensus       114 --------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~-~------~~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        114 --------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-S------SGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             --------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCh-h------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    11567889999999999999999999999985322 1      133345566667778888877765543

>PRK03699 putative transporter; Provisional

Probab=99.41  E-value=8.5e-12  Score=104.21  Aligned_cols=126  Identities=14%  Similarity=0.161  Sum_probs=105.8

Q ss_pred             HHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccc
Q 045901           11 ILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRS   90 (171)
Q Consensus        11 ~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~   90 (171)
                      .+.+.+++|+|+.+.+.+.+.+.++..++.+++|+++||+ ||||.+..+.++..++.+++.+++               
T Consensus        30 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~~l~~~~~---------------   93 (394)
T PRK03699         30 MGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFALMILAVAGLMFSH---------------   93 (394)
T ss_pred             hHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHcc---------------
Confidence            3445678999999999999999999999999999999998 999999999999999988776643               


Q ss_pred             CCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 045901           91 GCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQ  167 (171)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~  167 (171)
                              +.+.+++.+.+.+++.|...+...+.+.|.++++       +|++..+..+...++|..+++.+.+++.
T Consensus        94 --------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~l~  155 (394)
T PRK03699         94 --------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGK-------QRGSRLLFTDSFFSMAGMIFPIIAAYLL  155 (394)
T ss_pred             --------hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    4667888899999999999999999999988532       2567777777777888888887777654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.40  E-value=5.1e-12  Score=105.12  Aligned_cols=128  Identities=20%  Similarity=0.263  Sum_probs=106.2

Q ss_pred             HHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccC
Q 045901           12 LYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSG   91 (171)
Q Consensus        12 ~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~   91 (171)
                      +++.+++|.|+.+.+.+.+.+.....++.++.|+++||+ ||||.+.++.++..++.+++..+.                
T Consensus        32 ~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~----------------   94 (394)
T PRK11652         32 ADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIFILGTLVALFAH----------------   94 (394)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHHHHHHHHHHHc----------------
Confidence            445678999999999999999999999999999999998 999999999999999888776543                


Q ss_pred             CCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhcccc
Q 045901           92 CESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNL  170 (171)
Q Consensus        92 ~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~~  170 (171)
                             +.+.+++.+.+.|++.+...+....+..|.++++       ++++...+...+..++.++++.+.+++.+..
T Consensus        95 -------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~  159 (394)
T PRK11652         95 -------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGT-------QLRHANSLLNMGILVSPLLAPLIGGLLTTLF  159 (394)
T ss_pred             -------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                   4667888899999999888777777777876431       2667777777888888888888888776643

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.39  E-value=4.5e-12  Score=105.99  Aligned_cols=116  Identities=18%  Similarity=0.231  Sum_probs=100.2

Q ss_pred             CChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCccchh
Q 045901           20 METTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQ   99 (171)
Q Consensus        20 ~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (171)
                      .+..+.+.+.+.+.++..++.++.|+++||+ ||||.+.++.++..++.+++.....                    ..+
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~--------------------~~~  126 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAF--------------------ALS  126 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcc--------------------ccc
Confidence            3389999999999999999999999999998 9999999999999999887765431                    113


Q ss_pred             HHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 045901          100 LMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFI  163 (171)
Q Consensus       100 ~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~  163 (171)
                      .+.+++++++.|+|.|...+...++++|.++++       +|++..++++...++|.++++.+.
T Consensus       127 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       127 VEMLIVGRVLLGIGVGIASALVPMYLSEIAPKA-------LRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             hHHHHHHHHHHHhhhhHHHhHHHHHHHccCChh-------hhhhhhhHHHHHHHHHHHHHHHHH
Confidence            457889999999999999999999999988643       268888898999999999999877

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.39  E-value=8.5e-12  Score=106.08  Aligned_cols=129  Identities=10%  Similarity=0.039  Sum_probs=103.0

Q ss_pred             hCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhc-CCCCCCcccccccCCCCcc
Q 045901           18 YNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIF-PQEKPPVCDQMRSGCESAT   96 (171)
Q Consensus        18 lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~-~~~~~~~~~~~~~~~~~~~   96 (171)
                      ++.++.+.+.+.+.+.++..++.++.|+++||+ ||||++.++.++..++.+.+.++... +...+            ++
T Consensus        50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~------------~~  116 (479)
T PRK10077         50 ESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFTSIGP------------DN  116 (479)
T ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhccccccccc------------cc
Confidence            389999999999999999999999999999998 99999999999999988777654210 00000            01


Q ss_pred             chhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901           97 ASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI  166 (171)
Q Consensus        97 ~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i  166 (171)
                      ......++++|++.|++.|...|...++++|.++++       +|+++.+++.....+|.++++.+...+
T Consensus       117 ~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~-------~rg~~~~~~~~~~~~G~~~~~~~~~~~  179 (479)
T PRK10077        117 TGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH-------IRGKLVSFNQFAIIFGQLVVYFVNYFI  179 (479)
T ss_pred             hhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh-------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            123466789999999999999999999999998642       368888888888889988887655443

>TIGR00897 2A0118 polyol permease family

Probab=99.39  E-value=7.8e-12  Score=104.81  Aligned_cols=139  Identities=13%  Similarity=0.234  Sum_probs=108.0

Q ss_pred             eccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 045901            4 NGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPP   83 (171)
Q Consensus         4 ~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~   83 (171)
                      +.....+++++ +++|.++.+++.+.+.+.....++.++.|+++||+ ||||.+..+.++..++.+++.... ..     
T Consensus        30 ~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~~~~~~~~~~~~~~-~~-----  101 (402)
T TIGR00897        30 GLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLLLWCVGHAAFIVFG-LG-----  101 (402)
T ss_pred             hhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHHHHHh-cc-----
Confidence            34455677888 57899999999999999999999999999999998 999999999999998876553221 00     


Q ss_pred             cccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHH-HHHhHH
Q 045901           84 VCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGS-MLSATF  162 (171)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~-~i~~~~  162 (171)
                                   ..+.+.+++.+.+.|+|.+...+...+.+.|..++       ++|+++.+++....++|. ++++.+
T Consensus       102 -------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~~~~g~~~  161 (402)
T TIGR00897       102 -------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ-------DNLSSAVGWFWAVYSIGIGVFGSYY  161 (402)
T ss_pred             -------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         01355667778888988887777777777776643       237889999989999986 578887


Q ss_pred             HHhhcccc
Q 045901          163 IVYIQDNL  170 (171)
Q Consensus       163 ~~~i~~~~  170 (171)
                      .+++.+..
T Consensus       162 ~~~l~~~~  169 (402)
T TIGR00897       162 SSYAIPAF  169 (402)
T ss_pred             HHhccccc
Confidence            77776543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.39  E-value=8e-12  Score=104.45  Aligned_cols=126  Identities=13%  Similarity=0.105  Sum_probs=104.7

Q ss_pred             hhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCC
Q 045901           14 LCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCE   93 (171)
Q Consensus        14 l~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~   93 (171)
                      +.+++|.|+.+.+...+.+.++..++.++.|+++||+ ||||.+.++.++..++.+++..+.                  
T Consensus        39 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~------------------   99 (406)
T PRK15402         39 VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLAQ------------------   99 (406)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHc------------------
Confidence            4578999999999999999999999999999999998 999999999999998887765543                  


Q ss_pred             CccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhcccc
Q 045901           94 SATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNL  170 (171)
Q Consensus        94 ~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~~  170 (171)
                           +.+.+++.+.+.|++.+...+...+.+.|.++++       ++.+..++......++..+++.+.+++.++.
T Consensus       100 -----~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~  164 (406)
T PRK15402        100 -----SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEA-------DAIKITALMANVALLAPLLGPLVGAALIHVL  164 (406)
T ss_pred             -----cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence                 3566788899999999988888889999987542       2456667776777788888888888776643

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.37  E-value=1.9e-12  Score=110.68  Aligned_cols=131  Identities=12%  Similarity=0.075  Sum_probs=107.5

Q ss_pred             HHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccc
Q 045901           11 ILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRS   90 (171)
Q Consensus        11 ~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~   90 (171)
                      .+.+.+++|+++.+.+++.+.+..+..++.+++|+++||+ ||||.+.++.++..++.+++.....  ..          
T Consensus        52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~--~~----------  118 (467)
T PRK09556         52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLG--SG----------  118 (467)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHh--cc----------
Confidence            4556789999999999999999999999999999999998 9999999999988888776654310  00          


Q ss_pred             CCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 045901           91 GCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQ  167 (171)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~  167 (171)
                            ..+...+++.+.+.|++.|...|.....++|.+++++       |+++.+++....++|.++++.+..++.
T Consensus       119 ------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~-------rg~a~gi~~~~~~lG~~l~~~i~~~~~  182 (467)
T PRK09556        119 ------SVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK-------RGRFLGFWNISHNLGGAGAGGVALWGA  182 (467)
T ss_pred             ------cchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc-------eeeeEEeeecccchhhhHHHHHHHHHH
Confidence                  1256788889999999999999999999999987532       577888888888888888877665543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.36  E-value=1.2e-11  Score=102.71  Aligned_cols=133  Identities=18%  Similarity=0.124  Sum_probs=104.9

Q ss_pred             eccHHHHHHHhhHhhCCChHH-----HHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcC
Q 045901            4 NGLMPNMILYLCREYNMETTA-----ATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFP   78 (171)
Q Consensus         4 ~gv~~~l~~yl~~~lg~s~~~-----a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~   78 (171)
                      ....+.++.|++ ++|.+..+     ++.+.+.+.+...++.++.|+++||+ ||||.+..+.++..++.+++....   
T Consensus        31 ~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~---  105 (408)
T PRK09874         31 SLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSALGMGIVMVLMGLAQ---  105 (408)
T ss_pred             HHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHHHHHHHHHHHHHHHh---
Confidence            345567778875 68888655     47888889999999999999999998 999999999999998887765543   


Q ss_pred             CCCCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 045901           79 QEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSML  158 (171)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i  158 (171)
                                          +.+.+++.+.+.+++.+ ..+...+.+.|..+++       +|++..++.....++|.++
T Consensus       106 --------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~  157 (408)
T PRK09874        106 --------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPRN-------KSGWALGTLSTGGVSGALL  157 (408)
T ss_pred             --------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHh-------hhhHHHHHHHHHHHHHHHH
Confidence                                46677888888888755 4577777778876432       3678888888889999999


Q ss_pred             HhHHHHhhccc
Q 045901          159 SATFIVYIQDN  169 (171)
Q Consensus       159 ~~~~~~~i~~~  169 (171)
                      ++.+.+++.+.
T Consensus       158 ~~~~~~~l~~~  168 (408)
T PRK09874        158 GPLAGGLLADS  168 (408)
T ss_pred             HHHHHHHHHHH
Confidence            99888887654

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.36  E-value=1.3e-11  Score=105.92  Aligned_cols=129  Identities=11%  Similarity=0.041  Sum_probs=116.2

Q ss_pred             cHHHHHHHhhHhhCCChHH-HHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 045901            6 LMPNMILYLCREYNMETTA-ATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPV   84 (171)
Q Consensus         6 v~~~l~~yl~~~lg~s~~~-a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~   84 (171)
                      ..++..+|+.+++|+++.+ .+.+..+|..+..++.+++|+++||+ |.||.+.++.+...+..+++.++.         
T Consensus        44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa~---------  113 (511)
T TIGR00806        44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLGT---------  113 (511)
T ss_pred             hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHH---------
Confidence            3566778999999999999 99999999999999999999999998 999999999999999999888764         


Q ss_pred             ccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045901           85 CDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIV  164 (171)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~  164 (171)
                                    +...+.+.+++.|++.|... +...+++..+++       ++|+++.+++..+.++|.++++.+++
T Consensus       114 --------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~-------kER~ratsi~~sg~~vG~~Ia~~L~q  171 (511)
T TIGR00806       114 --------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPP-------SRYQRAAAYSRAAVLLGVFLSSVLGQ  171 (511)
T ss_pred             --------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          56788999999999999998 999999999863       23788999999999999999998888


Q ss_pred             hh
Q 045901          165 YI  166 (171)
Q Consensus       165 ~i  166 (171)
                      ++
T Consensus       172 ll  173 (511)
T TIGR00806       172 LL  173 (511)
T ss_pred             HH
Confidence            73

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00898 2A0119 cation transport protein

Probab=99.36  E-value=7.2e-12  Score=107.52  Aligned_cols=124  Identities=15%  Similarity=0.185  Sum_probs=105.6

Q ss_pred             HhhHhhCCC---hHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccc
Q 045901           13 YLCREYNME---TTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMR   89 (171)
Q Consensus        13 yl~~~lg~s---~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~   89 (171)
                      -+.++++++   +.+.+.+.+.+.++..++.++.|+++||+ ||||.+.++.++..++.+++.++.              
T Consensus       114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~--------------  178 (505)
T TIGR00898       114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSP--------------  178 (505)
T ss_pred             cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHcc--------------
Confidence            345688998   99999999999999999999999999998 999999999999999988776653              


Q ss_pred             cCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 045901           90 SGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQ  167 (171)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~  167 (171)
                               +++.+++.+++.|++.|...+....++.|.++++       +|++...+......+|.++++.+..++.
T Consensus       179 ---------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~~~  240 (505)
T TIGR00898       179 ---------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKK-------QRAIVGTLIQVFFSLGLVLLPLVAYFIP  240 (505)
T ss_pred             ---------cHHHHHHHHHHHHhhccchHHHHHHHhheecChh-------hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                     4677889999999999999999999999998643       2677777777788888888887665543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.34  E-value=1.4e-11  Score=104.92  Aligned_cols=124  Identities=11%  Similarity=0.077  Sum_probs=108.1

Q ss_pred             hhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCcc
Q 045901           17 EYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESAT   96 (171)
Q Consensus        17 ~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~   96 (171)
                      ++++++.+.+.+.+.+..+..++.+++|+++||+ |||+.+.++.++..++.+++..+..                    
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~--------------------  128 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG--------------------  128 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence            6889999999999999999999999999999998 9999999999999988877654421                    


Q ss_pred             chhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 045901           97 ASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDN  169 (171)
Q Consensus        97 ~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~  169 (171)
                       .+...+++.+++.|++.|...|....+++|.++++       +|+++.+++..+.++|.++++.+.+++.+.
T Consensus       129 -~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~  193 (465)
T TIGR00894       129 -GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPK-------ERSRLLGMSTSGFQLGTFIFLPISGWLCES  193 (465)
T ss_pred             -cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             13456888899999999999999999999987532       378999999999999999999999988765

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.33  E-value=3.4e-11  Score=99.27  Aligned_cols=136  Identities=11%  Similarity=0.076  Sum_probs=105.1

Q ss_pred             cHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 045901            6 LMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVC   85 (171)
Q Consensus         6 v~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~   85 (171)
                      +...++.|+++++|+++.+++.+.....++..++.++.|+++||+ ||||.+.++.++..+..+.+....          
T Consensus       257 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~----------  325 (405)
T TIGR00891       257 IQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPVFAIG----------  325 (405)
T ss_pred             hhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHHHHhC----------
Confidence            445678899999999999999999999999999999999999997 999999988776543322221111          


Q ss_pred             cccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 045901           86 DQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVY  165 (171)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~  165 (171)
                                  .+.+.+.++.++.+...+...+..++++.|.++++       +|++.+++.+...++|..+++.+.++
T Consensus       326 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~~g~~~g~~~~g~  386 (405)
T TIGR00891       326 ------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTD-------QRAAGLGFTYQLGNLGGALAPIIGAL  386 (405)
T ss_pred             ------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcc-------hhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence                        02344455556666666677778888888877532       37889999999999999999999999


Q ss_pred             hccccC
Q 045901          166 IQDNLG  171 (171)
Q Consensus       166 i~~~~g  171 (171)
                      +.|+.|
T Consensus       387 l~~~~g  392 (405)
T TIGR00891       387 LAQRLD  392 (405)
T ss_pred             HHHhcc
Confidence            998754

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.32  E-value=4.1e-11  Score=97.47  Aligned_cols=134  Identities=13%  Similarity=0.117  Sum_probs=106.1

Q ss_pred             HHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 045901            8 PNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQ   87 (171)
Q Consensus         8 ~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~   87 (171)
                      ...+.|. ++++.++.+++.+...+.....++.++.|+++||+ |||+.+.++.++..++.+++.....           
T Consensus       226 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~-----------  292 (377)
T TIGR00890       226 GLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGMAAMLFIPM-----------  292 (377)
T ss_pred             HHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHHccc-----------
Confidence            3455564 56899999999999999999999999999999998 9999999999998888776654320           


Q ss_pred             cccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 045901           88 MRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQ  167 (171)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~  167 (171)
                                .....+.....+.+++.|...+..+++..|.++++       ++++.+++++...++|..+++.+.+++.
T Consensus       293 ----------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~~g~~~~~~~~g~l~  355 (377)
T TIGR00890       293 ----------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPA-------NSAANYGFLYTAKAVAGIFGGLIASHAL  355 (377)
T ss_pred             ----------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhh-------hhhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence                      01233445556778888888888888889987642       3688899999999999999999999887


Q ss_pred             cccC
Q 045901          168 DNLG  171 (171)
Q Consensus       168 ~~~g  171 (171)
                      ++.|
T Consensus       356 ~~~g  359 (377)
T TIGR00890       356 TEIG  359 (377)
T ss_pred             hhhc
Confidence            7654

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.31  E-value=3.4e-11  Score=103.69  Aligned_cols=138  Identities=14%  Similarity=0.108  Sum_probs=98.9

Q ss_pred             ccHHHHHHHhhHhhCCChHH-HHH-----HHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcC
Q 045901            5 GLMPNMILYLCREYNMETTA-ATN-----VLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFP   78 (171)
Q Consensus         5 gv~~~l~~yl~~~lg~s~~~-a~~-----~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~   78 (171)
                      ++.....+++.++++.+..+ .+.     +.+....+..++.++.|+++||+ ||||++.++.++..++.+++.+++.+.
T Consensus        33 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~~~l~~i~~~~~a~~~~~~  111 (490)
T PRK10642         33 GVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAITIVIMSISTFCIGLIPSYA  111 (490)
T ss_pred             HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHhcccHH
Confidence            34455666777777533321 111     23566678889999999999998 999999999999999999887764211


Q ss_pred             CCCCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 045901           79 QEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSML  158 (171)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i  158 (171)
                      ...               ......+++.|++.|+|.|+..+...++++|.+++++       |+++..+...+.++|.++
T Consensus       112 ~~g---------------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~-------Rg~~~~~~~~~~~~G~~l  169 (490)
T PRK10642        112 TIG---------------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK-------RGFMGSWLDFGSIAGFVL  169 (490)
T ss_pred             HHH---------------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC-------CcHHHHHHHHHHHHHHHH
Confidence            000               0011247889999999999999999999999986532       566777777777777777


Q ss_pred             HhHHHHh
Q 045901          159 SATFIVY  165 (171)
Q Consensus       159 ~~~~~~~  165 (171)
                      +..+...
T Consensus       170 g~~~~~~  176 (490)
T PRK10642        170 GAGVVVL  176 (490)
T ss_pred             HHHHHHH
Confidence            7654433

>PRK03699 putative transporter; Provisional

Probab=99.31  E-value=3.3e-11  Score=100.70  Aligned_cols=137  Identities=15%  Similarity=0.102  Sum_probs=104.2

Q ss_pred             eeccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 045901            3 SNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKP   82 (171)
Q Consensus         3 ~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~   82 (171)
                      ++++..++|.|+++++|+|+.+++.+.+.+..+..++.+++|+++||+ +|||.+.....+..+...++....       
T Consensus       221 ~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~~~~-------  292 (394)
T PRK03699        221 QLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVLMYLFVNTD-------  292 (394)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHHHHHHHHcC-------
Confidence            356677899999999999999999999999999999999999999998 999999888777666554443321       


Q ss_pred             CcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHH
Q 045901           83 PVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATF  162 (171)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~  162 (171)
                                      +.....+..++.|++.+...+...+...|+.+++        +++..++.+...++|..+++.+
T Consensus       293 ----------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~--------~~~~~g~~~~~~~~g~~i~p~~  348 (394)
T PRK03699        293 ----------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA--------SPKLVNFILTCGTIGTMLTFVV  348 (394)
T ss_pred             ----------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--------CHHHHHHHHHhhhHHHHHHHHH
Confidence                            1223444556677777777777777777765422        1334566777888999999999


Q ss_pred             HHhhccccC
Q 045901          163 IVYIQDNLG  171 (171)
Q Consensus       163 ~~~i~~~~g  171 (171)
                      .+++.|..|
T Consensus       349 ~G~l~~~~g  357 (394)
T PRK03699        349 TSPIVAHFG  357 (394)
T ss_pred             HHHHHHHhC
Confidence            999987654

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.31  E-value=6.7e-11  Score=95.02  Aligned_cols=136  Identities=22%  Similarity=0.305  Sum_probs=116.8

Q ss_pred             eccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchh-HHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 045901            4 NGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYP-MIGFGCIISLLGMVLLWFTAIFPQEKP   82 (171)
Q Consensus         4 ~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~-~i~~~~~l~~lg~~ll~~~~~~~~~~~   82 (171)
                      ......++.|+.+.+|.++.+.+.+.........++.++.|+++||+ |||+ .+.++.++..++.+.+....       
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~-------  263 (352)
T cd06174         192 YGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAALGLLLLALAP-------  263 (352)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHhc-------
Confidence            34556778888877899999999999999999999999999999998 9999 99999999999887776543       


Q ss_pred             CcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHH
Q 045901           83 PVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATF  162 (171)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~  162 (171)
                                      +.+...+...+.+++.+...+....+..|..+++       +|++.++......++|..+++.+
T Consensus       264 ----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~i  320 (352)
T cd06174         264 ----------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPE-------ARGTASGLFNTFGSLGGALGPLL  320 (352)
T ss_pred             ----------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence                            3456777888999999999999999999987542       37889999999999999999999


Q ss_pred             HHhhcccc
Q 045901          163 IVYIQDNL  170 (171)
Q Consensus       163 ~~~i~~~~  170 (171)
                      .+++.++.
T Consensus       321 ~g~l~~~~  328 (352)
T cd06174         321 AGLLLDTG  328 (352)
T ss_pred             HHHHhccc
Confidence            99987654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.30  E-value=4e-11  Score=97.24  Aligned_cols=134  Identities=14%  Similarity=0.104  Sum_probs=111.7

Q ss_pred             HHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 045901            8 PNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQ   87 (171)
Q Consensus         8 ~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~   87 (171)
                      ..+|.|.++.+|.++.+.+.+.....++..++.++.|++.||+ |||+.+..+.++..++..++....            
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------------  298 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGLAILVVGLTP------------  298 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHHHhhc------------
Confidence            5567777777999999999999999999999999999999998 999999988777777665554432            


Q ss_pred             cccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 045901           88 MRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQ  167 (171)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~  167 (171)
                               + +.+.+.+..++.+++.+...+...+++.|..++       +.|++.++++....++|..+++.+.+++.
T Consensus       299 ---------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~~~~~~~~~~~g~~~~g~l~  361 (365)
T TIGR00900       299 ---------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPA-------ELLGRVFGAQFSLSHAAWPLGLILAGPLA  361 (365)
T ss_pred             ---------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     1 245567777889999999999999999998753       23789999999999999999999999999


Q ss_pred             cccC
Q 045901          168 DNLG  171 (171)
Q Consensus       168 ~~~g  171 (171)
                      |+.|
T Consensus       362 ~~~g  365 (365)
T TIGR00900       362 DHLG  365 (365)
T ss_pred             HHcC
Confidence            8876

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.30  E-value=6.5e-11  Score=102.13  Aligned_cols=123  Identities=16%  Similarity=0.104  Sum_probs=102.1

Q ss_pred             CCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCccch
Q 045901           19 NMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATAS   98 (171)
Q Consensus        19 g~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (171)
                      +.++.+.+.+...+.++..++.++.|+++||+ |||+.+.++.++..++.+++.++...   .+              ..
T Consensus        52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~~~~~v~~~~~~~~~~~---~~--------------~~  113 (502)
T TIGR00887        52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMELIIMIIATVASGLSPGS---SP--------------KS  113 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHccCc---cc--------------ch
Confidence            46677888999999999999999999999998 99999999999999998877664310   00              11


Q ss_pred             hHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901           99 QLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI  166 (171)
Q Consensus        99 ~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i  166 (171)
                      +...+++++++.|++.|+..+..+.+++|.++++       .|++..++.+....+|.++++.+..++
T Consensus       114 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~-------~Rg~~~~~~~~~~~~g~~~g~~~~~~~  174 (502)
T TIGR00887       114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKK-------WRGAMMAAVFAMQGFGILAGAIVALIV  174 (502)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChh-------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567889999999999999999999999998643       378888999899999988888766544

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.29  E-value=8.6e-11  Score=101.01  Aligned_cols=124  Identities=6%  Similarity=-0.013  Sum_probs=97.3

Q ss_pred             HHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccc
Q 045901           11 ILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRS   90 (171)
Q Consensus        11 ~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~   90 (171)
                      .+++.+++|++..+.+.+...+..+..++.+++|+++||+ |||+.+..+.++..++.+++.++.               
T Consensus        59 ~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~---------------  122 (476)
T PLN00028         59 LPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLTAPAVFCMSLVS---------------  122 (476)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHhc---------------
Confidence            3467789999999999999999999999999999999998 999999999999998887776653               


Q ss_pred             CCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901           91 GCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI  166 (171)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i  166 (171)
                              +...+++.+++.|++.+... .....++|.++++       +|+++.++.....++|..+++.+.+.+
T Consensus       123 --------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~-------~rg~a~g~~~~~~~~g~~~~~~~~~~i  182 (476)
T PLN00028        123 --------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGK-------IVGTANGIAAGWGNLGGGVTQLLMPLV  182 (476)
T ss_pred             --------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChh-------heeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    35567778888898887654 3455678888542       367788887777777777776555544

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.29  E-value=8.3e-11  Score=98.31  Aligned_cols=132  Identities=11%  Similarity=0.115  Sum_probs=97.5

Q ss_pred             HHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 045901            7 MPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCD   86 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~   86 (171)
                      ..+++.|+++++|+++.+++.+.....+...++.+++|+++||+ ||||.+..+.+...+....+....           
T Consensus       236 ~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~-----------  303 (393)
T PRK15011        236 IINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVCFYAGMLMAH-----------  303 (393)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence            45688899999999999999988887788888899999999998 999988877766555433332221           


Q ss_pred             ccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901           87 QMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI  166 (171)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i  166 (171)
                                  +.+.+.+.+.+.+++.|...+..++...|..+++        ++++.+++....++|..+++.+.+++
T Consensus       304 ------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~--------~g~~~~~~~~~~~lg~~~g~~l~G~i  363 (393)
T PRK15011        304 ------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ--------AGSATTLYTNTSRVGWIIAGSLAGIV  363 (393)
T ss_pred             ------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--------cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        2334455556666666666666666677766421        46677777778899999999999998


Q ss_pred             cccc
Q 045901          167 QDNL  170 (171)
Q Consensus       167 ~~~~  170 (171)
                      .|..
T Consensus       364 ~~~~  367 (393)
T PRK15011        364 AEIW  367 (393)
T ss_pred             HHHh
Confidence            8754

>PRK15075 citrate-proton symporter; Provisional

Probab=99.28  E-value=7.6e-11  Score=99.82  Aligned_cols=137  Identities=14%  Similarity=0.099  Sum_probs=96.7

Q ss_pred             HHHHHHHhhHhhCCChHHHHHHH-HHHHH-----HHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCC
Q 045901            7 MPNMILYLCREYNMETTAATNVL-FIWTA-----ATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQE   80 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~~a~~~~-~~~~~-----~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~   80 (171)
                      .....+.+.++++.++.+.+... +....     ...++.++.|+++||+ ||||.+..+.++..++.+++.+++..+.+
T Consensus        34 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~l~~~~~~~~~~  112 (434)
T PRK15075         34 FGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIVTLSIMASGTLLIAFVPGYATI  112 (434)
T ss_pred             HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            34556677889998887755443 22221     1235678999999998 99999999999999999888775411100


Q ss_pred             CCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 045901           81 KPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSA  160 (171)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~  160 (171)
                      .               ......++++|++.|++.|...++...+++|.+++++       |++..+++....++|..+++
T Consensus       113 ~---------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~-------rg~~~~~~~~~~~~g~~~g~  170 (434)
T PRK15075        113 G---------------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR-------KGFYTSWQSASQQVAVVFAA  170 (434)
T ss_pred             H---------------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc-------chHHHHHHHHHHHHHHHHHH
Confidence            0               0001246888999999999999999999999986532       67777777777777766666


Q ss_pred             HHHHhh
Q 045901          161 TFIVYI  166 (171)
Q Consensus       161 ~~~~~i  166 (171)
                      .+.+.+
T Consensus       171 ~~g~~l  176 (434)
T PRK15075        171 LLGYLL  176 (434)
T ss_pred             HHHHHH
Confidence            555544

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.28  E-value=6.7e-11  Score=101.12  Aligned_cols=137  Identities=18%  Similarity=0.174  Sum_probs=101.3

Q ss_pred             cHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 045901            6 LMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVC   85 (171)
Q Consensus         6 v~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~   85 (171)
                      +..++|.|+++++|+++.+++.+.....++..++.+++||++||+ ||||.+.++.++..++.+++....          
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~----------  362 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIG----------  362 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhcc----------
Confidence            456789999989999999999999999999999999999999997 999999888777666554332211          


Q ss_pred             cccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 045901           86 DQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVY  165 (171)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~  165 (171)
                                 ....+.....+.+.+....+..+..++.+.|.++++       ++++.+++++...++|..+++.+.++
T Consensus       363 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~g~~lgp~l~g~  424 (496)
T PRK03893        363 -----------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTE-------QRAAGLGFTYNVGALGGALAPILGAL  424 (496)
T ss_pred             -----------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHH-------HhhcccchhhhhhhHHHHHHHHHHHH
Confidence                       012222223233322222234566777778877532       37889999999999999999999999


Q ss_pred             hccccC
Q 045901          166 IQDNLG  171 (171)
Q Consensus       166 i~~~~g  171 (171)
                      +.|+.|
T Consensus       425 l~~~~g  430 (496)
T PRK03893        425 IAQRLD  430 (496)
T ss_pred             HhccCC
Confidence            988654

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=1e-11  Score=103.86  Aligned_cols=125  Identities=19%  Similarity=0.159  Sum_probs=115.4

Q ss_pred             hhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCcc
Q 045901           17 EYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESAT   96 (171)
Q Consensus        17 ~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~   96 (171)
                      +++-++.+.|++..++...+.+..++.|.+.||. |+|--+++|+.+..+.++++++..                     
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~---------------------  157 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGN---------------------  157 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcc---------------------
Confidence            4677889999999999999999999999999997 999999999999999999998875                     


Q ss_pred             chhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhccccC
Q 045901           97 ASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG  171 (171)
Q Consensus        97 ~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~~g  171 (171)
                        +++.+.++|.++|+|.+...++..++++|.++++++      |+++.++......+|.++||-+++.++|..|
T Consensus       158 --sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e------r~~vmGialgfislG~lvgPpfGGilYe~~G  224 (464)
T KOG3764|consen  158 --SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE------RGSVMGIALGFISLGVLVGPPFGGILYEFAG  224 (464)
T ss_pred             --hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh------hhHHHHHHHHHHhccceecCCcccchHhhcC
Confidence              578899999999999999999999999999987543      7899999999999999999999999998765

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.27  E-value=9.1e-11  Score=101.03  Aligned_cols=139  Identities=12%  Similarity=0.132  Sum_probs=100.9

Q ss_pred             ceeccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 045901            2 ASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEK   81 (171)
Q Consensus         2 ~~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~   81 (171)
                      ++|++..++|.|+++++|+++.++........++..++.+++|+++||+ |||+.+.++.++..++...+.....     
T Consensus       265 ~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~-----  338 (490)
T PRK10642        265 TYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVALFVLAIPAFILIN-----  338 (490)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence            4677888899999989999999888888888888999999999999998 9999998887755544333221110     


Q ss_pred             CCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhH
Q 045901           82 PPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSAT  161 (171)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~  161 (171)
                                     ..+...+++++++.+++.+...+...+...|.++++       .|++..++.|...++++.+++.
T Consensus       339 ---------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~-------~Rg~~~g~~~~~~~~~g~~~p~  396 (490)
T PRK10642        339 ---------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTH-------IRYSALAAAFNISVLVAGLTPT  396 (490)
T ss_pred             ---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc-------cchHHHHHHHHHHHHHHHHHHH
Confidence                           012445667777777777666677777788887643       2677777755555666667777


Q ss_pred             HHHhhcc
Q 045901          162 FIVYIQD  168 (171)
Q Consensus       162 ~~~~i~~  168 (171)
                      +.+++.+
T Consensus       397 i~g~l~~  403 (490)
T PRK10642        397 LAAWLVE  403 (490)
T ss_pred             HHHHHHH
Confidence            7877655

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.26  E-value=1.2e-10  Score=95.45  Aligned_cols=133  Identities=12%  Similarity=0.074  Sum_probs=101.6

Q ss_pred             HHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 045901            7 MPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCD   86 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~   86 (171)
                      ...++.|+++++|.++.+++.+.....+...++.+++|+++||+ ||||.+.++.++..+....+...+           
T Consensus       219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~-----------  286 (375)
T TIGR00899       219 IINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAADN-----------  286 (375)
T ss_pred             HhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHH-----------
Confidence            34578899889999999999988877777788888999999998 999999888776655544333321           


Q ss_pred             ccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901           87 QMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI  166 (171)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i  166 (171)
                                  +.+.+.+...+.+++.|...+....+..|..++        ++++..++++...++|..+++.+.+++
T Consensus       287 ------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~g~~~~g~~  346 (375)
T TIGR00899       287 ------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG--------RAGAATTLYTNTGRVGWIIAGSVGGIL  346 (375)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc--------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        344455556677888887777777777776532        145788888899999999999999988


Q ss_pred             ccccC
Q 045901          167 QDNLG  171 (171)
Q Consensus       167 ~~~~g  171 (171)
                      .+..|
T Consensus       347 ~~~~g  351 (375)
T TIGR00899       347 AERWS  351 (375)
T ss_pred             HHhcc
Confidence            77543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.26  E-value=8.2e-11  Score=99.76  Aligned_cols=128  Identities=13%  Similarity=0.107  Sum_probs=103.8

Q ss_pred             HHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccc
Q 045901           10 MILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMR   89 (171)
Q Consensus        10 l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~   89 (171)
                      ..+++++ +|+++.+.+.+.+.+..+..++.++.|+++||+ ||||.+.++.++..++.+++.....   .         
T Consensus        49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~---~---------  114 (438)
T TIGR00712        49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPW---A---------  114 (438)
T ss_pred             hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhcccc---c---------
Confidence            4456665 599999999999999999999999999999998 9999999999999988876654321   0         


Q ss_pred             cCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 045901           90 SGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVY  165 (171)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~  165 (171)
                             ..+...+.+.+.+.+++.|...+.....+.|.++++       +|+++.++++...++|..+++.+.+.
T Consensus       115 -------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~-------~rg~~~~~~~~~~~~g~~~~~~l~~~  176 (438)
T TIGR00712       115 -------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQS-------ERGTIVSIWNCAHNIGGGIPPLLVLL  176 (438)
T ss_pred             -------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcc-------cchhHHHHHHHHHHhHhHHHHHHHHH
Confidence                   013456677888999999999898889999988643       26889999888999998888766554

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.26  E-value=1e-11  Score=110.59  Aligned_cols=155  Identities=15%  Similarity=0.221  Sum_probs=119.5

Q ss_pred             cHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCC------
Q 045901            6 LMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQ------   79 (171)
Q Consensus         6 v~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~------   79 (171)
                      .......-++++++++..+.+.+.+.+.++..+..++.|+++||+ ||||.+.++.++..+|.+++++.+.+..      
T Consensus        51 ~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~  129 (633)
T TIGR00805        51 LVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYST  129 (633)
T ss_pred             HHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHHHHHHHHHHhChHHhcCCccccc
Confidence            334444566678999999999999999999999999999999997 9999999999999999999877652110      


Q ss_pred             ----------CCCCccccc----------ccCCCCcc--chhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcch
Q 045901           80 ----------EKPPVCDQM----------RSGCESAT--ASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKN  137 (171)
Q Consensus        80 ----------~~~~~~~~~----------~~~~~~~~--~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~  137 (171)
                                ..++-|...          ...|+..+  ...+..+++++++.|+|.+...+...+++.|.++++     
T Consensus       130 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~-----  204 (633)
T TIGR00805       130 TVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSK-----  204 (633)
T ss_pred             cccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCcc-----
Confidence                      000112100          01222211  113567789999999999999999999999988653     


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 045901          138 AGALQSYFSWYYVSIAAGSMLSATFIVYIQD  168 (171)
Q Consensus       138 ~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~  168 (171)
                        +|+.+.++++....+|.++|+.+++++.+
T Consensus       205 --~~~~~~~i~~~~~~iG~~lG~llgg~l~~  233 (633)
T TIGR00805       205 --NSPLYIGILESIAVFGPAFGYLLGSFCLQ  233 (633)
T ss_pred             --ccHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence              26889999999999999999999888764

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.26  E-value=9.4e-11  Score=100.20  Aligned_cols=128  Identities=17%  Similarity=0.113  Sum_probs=103.0

Q ss_pred             HHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccC
Q 045901           12 LYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSG   91 (171)
Q Consensus        12 ~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~   91 (171)
                      ..+.+++|.++.+++.+.+.+.....++.+++|+++||+ ||||.++.+.++..++.+++.++.                
T Consensus        43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~----------------  105 (455)
T TIGR00892        43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSS----------------  105 (455)
T ss_pred             HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhh----------------
Confidence            345578999999999999999999999999999999998 999999999999999888776653                


Q ss_pred             CCCccchhHHHHHH-HHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhcccc
Q 045901           92 CESATASQLMLLYS-AFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNL  170 (171)
Q Consensus        92 ~~~~~~~~~~~~~~-~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~~  170 (171)
                             +.+.+++ .+++.|++.|...+...+.+.|.++        ++|+++.++.+...++|..+++.+.+++.+..
T Consensus       106 -------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~--------~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~  170 (455)
T TIGR00892       106 -------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY--------RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF  170 (455)
T ss_pred             -------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH--------hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence                   2344443 4577899988766666677778762        13788999999999999999988888877654


Q ss_pred             C
Q 045901          171 G  171 (171)
Q Consensus       171 g  171 (171)
                      |
T Consensus       171 g  171 (455)
T TIGR00892       171 G  171 (455)
T ss_pred             C
Confidence            3

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.26  E-value=1.4e-10  Score=98.81  Aligned_cols=125  Identities=12%  Similarity=0.060  Sum_probs=101.2

Q ss_pred             HHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccc
Q 045901            9 NMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQM   88 (171)
Q Consensus         9 ~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~   88 (171)
                      ...+|++++ |+++.+.+.+.+.+.+...++.+++|+++||+ ||||.+.++.++..++.+++.++...           
T Consensus        50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~~-----------  116 (452)
T PRK11273         50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWA-----------  116 (452)
T ss_pred             HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhcc-----------
Confidence            345677877 99999999999999999999999999999998 99999999999999998877664310           


Q ss_pred             ccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHH-HHHhH
Q 045901           89 RSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGS-MLSAT  161 (171)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~-~i~~~  161 (171)
                              ..+.+.+++.+.+.|++.|...|.......|.++++       +|++..++++.+.++|. ++++.
T Consensus       117 --------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~l  175 (452)
T PRK11273        117 --------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK-------ERGGIVSVWNCAHNVGGGLPPLL  175 (452)
T ss_pred             --------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChH-------HHHHHHHHHHHHHHhhhhHHHHH
Confidence                    113556778888999999998888888888887532       37888888888888875 44554

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.25  E-value=8.1e-11  Score=109.84  Aligned_cols=133  Identities=10%  Similarity=0.069  Sum_probs=107.2

Q ss_pred             HHHHHhhHhhCCCh--HHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 045901            9 NMILYLCREYNMET--TAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCD   86 (171)
Q Consensus         9 ~l~~yl~~~lg~s~--~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~   86 (171)
                      .+..++...++.+.  ...+++.+++.+...++.+++|+++||+ ||||+++++.++..++.+++.++..          
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~~~~~~~~~~~~~----------   99 (1146)
T PRK08633         31 LIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFEVGLTLLIVLAYY----------   99 (1146)
T ss_pred             HHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence            34455555556554  3468888999999999999999999998 9999999999887777766555431          


Q ss_pred             ccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901           87 QMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI  166 (171)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i  166 (171)
                                ..+.+.+++.+++.|++.|...|...++++|.++++       +|+++++++....++|.++++.+++++
T Consensus       100 ----------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~ig~~lg~~l~~~l  162 (1146)
T PRK08633        100 ----------LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKE-------NLSRANGLLEAFTIVAILAGTALFSFL  162 (1146)
T ss_pred             ----------HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcc-------cchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence                      114677889999999999999999999999998643       268899999999999999999988887


Q ss_pred             ccc
Q 045901          167 QDN  169 (171)
Q Consensus       167 ~~~  169 (171)
                      .+.
T Consensus       163 ~~~  165 (1146)
T PRK08633        163 FES  165 (1146)
T ss_pred             HHh
Confidence            653

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.25  E-value=8.6e-11  Score=98.04  Aligned_cols=140  Identities=9%  Similarity=-0.038  Sum_probs=99.7

Q ss_pred             eccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 045901            4 NGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPP   83 (171)
Q Consensus         4 ~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~   83 (171)
                      ....++++.|+++++|+++.+.+.+.+.+.+...++.++.|+++||+ ||||.+..+.+...++..........+..   
T Consensus        19 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~---   94 (396)
T TIGR00882        19 SAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLVLFAPFFIYVFGPLL---   94 (396)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHhhhHH---
Confidence            34567889999999999999999999999999999999999999998 99999998877776554432211100000   


Q ss_pred             cccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 045901           84 VCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFI  163 (171)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~  163 (171)
                                  .......+.++.++.+++.+...|....+..|.-++         ++..+++.....++|.++++.+.
T Consensus        95 ------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---------~~~~~g~~~~~~~~g~~~g~~~~  153 (396)
T TIGR00882        95 ------------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN---------SNFEYGKARMFGCVGWALCASIA  153 (396)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh---------cccccchhhhhcccHHHHHHHHH
Confidence                        000123345566778888888888887776663211         12345556667789999998888


Q ss_pred             Hhhcc
Q 045901          164 VYIQD  168 (171)
Q Consensus       164 ~~i~~  168 (171)
                      +.+.+
T Consensus       154 g~l~~  158 (396)
T TIGR00882       154 GILFS  158 (396)
T ss_pred             hhhhc
Confidence            87654

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.25  E-value=3.8e-11  Score=100.83  Aligned_cols=132  Identities=16%  Similarity=0.076  Sum_probs=104.6

Q ss_pred             HHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccC
Q 045901           12 LYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSG   91 (171)
Q Consensus        12 ~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~   91 (171)
                      +.+.++++.++.+++.+.+.+.....++.++.|+++||+ ||||.+.++.++..++.+++.......             
T Consensus        41 ~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~~~~~~~~~-------------  106 (417)
T PRK10489         41 PVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIGLALNAFLP-------------  106 (417)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHHHHHHHHcC-------------
Confidence            344457788999999999999999999999999999998 999999999988888776654322110             


Q ss_pred             CCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 045901           92 CESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDN  169 (171)
Q Consensus        92 ~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~  169 (171)
                           ..+.+.+++.+++.+++.+...++..+.+.|..+++       ++++...+.+...++|..+++.+.+++.+.
T Consensus       107 -----~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~  172 (417)
T PRK10489        107 -----EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRE-------NLMQAGAITMLTVRLGSVISPALGGLLIAA  172 (417)
T ss_pred             -----CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHH-------HHHHHHHHHHHHHhHHHHhHHHHHHHHHHH
Confidence                 114566777888889988888888888888876532       367788888889999999999988877653

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.24  E-value=1e-10  Score=100.89  Aligned_cols=138  Identities=14%  Similarity=0.036  Sum_probs=109.8

Q ss_pred             eeccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 045901            3 SNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKP   82 (171)
Q Consensus         3 ~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~   82 (171)
                      +++....++.|+++.+|+|+.+++...........++.++.|++.||+ |||+.+..+.++..++.+++.....      
T Consensus       275 ~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~~~~~l~~~~~------  347 (495)
T PRK14995        275 LVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSALSFYGLAMTDF------  347 (495)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHhcC------
Confidence            345566788999999999999999999999999999999999999998 9999999999988888766544320      


Q ss_pred             CcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHH
Q 045901           83 PVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATF  162 (171)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~  162 (171)
                                    ..+.+......++.|+|.|...+.......+..+++       +++....++....++|..+|..+
T Consensus       348 --------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~lG~~~G~ai  406 (495)
T PRK14995        348 --------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPE-------KAAAAGAIETMAYELGAGLGIAI  406 (495)
T ss_pred             --------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHH-------hcchHHHHHHHHHHHHHHHHHHH
Confidence                          012334455677889999998888887777765432       25778888889999999999988


Q ss_pred             HHhhcc
Q 045901          163 IVYIQD  168 (171)
Q Consensus       163 ~~~i~~  168 (171)
                      .+.+.+
T Consensus       407 ~g~i~~  412 (495)
T PRK14995        407 FGLLLS  412 (495)
T ss_pred             HHHHHH
Confidence            887755

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.24  E-value=1.6e-10  Score=98.83  Aligned_cols=136  Identities=13%  Similarity=0.027  Sum_probs=95.8

Q ss_pred             eccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 045901            4 NGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPP   83 (171)
Q Consensus         4 ~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~   83 (171)
                      +++..++|.|+++++|+|+.+++........+..++.+++|+++||+ ||||.+.+...+..++..++....        
T Consensus       275 ~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~~~~~~~~~~--------  345 (467)
T PRK09556        275 IGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALIIFTLGVYQH--------  345 (467)
T ss_pred             HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHHHHHHHHh--------
Confidence            45667899999999999999999999999999999999999999998 999987766555444432222211        


Q ss_pred             cccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHH-HHHHHhHH
Q 045901           84 VCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAA-GSMLSATF  162 (171)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~ni-G~~i~~~~  162 (171)
                                   ..+.....+.+++.|+..............|.++++       .++++.++.....++ |..+++.+
T Consensus       346 -------------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~-------~~g~a~gi~~~~g~l~g~~~~~~~  405 (467)
T PRK09556        346 -------------ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKK-------AIGVANGIKGTFAYLFGDSFAKVG  405 (467)
T ss_pred             -------------cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchh-------hHHHHHHHHHHHHHHHhHHHHhhh
Confidence                         002233444555555433222222234556766532       378999998888886 77899999


Q ss_pred             HHhhcc
Q 045901          163 IVYIQD  168 (171)
Q Consensus       163 ~~~i~~  168 (171)
                      .+++.|
T Consensus       406 ~G~i~~  411 (467)
T PRK09556        406 LGMIAD  411 (467)
T ss_pred             HHHHhc
Confidence            999988

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.23  E-value=1.9e-10  Score=96.34  Aligned_cols=134  Identities=13%  Similarity=0.126  Sum_probs=112.1

Q ss_pred             HHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 045901            7 MPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCD   86 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~   86 (171)
                      ...+.+.+++.++++..+++.+-.++..+..+.++..|++.+|+ |+|+.++.++.++.+|..+..-++.          
T Consensus        32 ~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa~----------  100 (422)
T COG0738          32 NDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAAS----------  100 (422)
T ss_pred             chhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhhh----------
Confidence            34577888899999999999999999999999999999999998 9999999999999999988854431          


Q ss_pred             ccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901           87 QMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI  166 (171)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i  166 (171)
                                .+.+..|++++++.+.|.|..++..+|++++..++++..   + |   .|.-...+.+|+.++|.+++++
T Consensus       101 ----------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~---~-r---lnl~q~fn~lGa~~gp~~g~~l  163 (422)
T COG0738         101 ----------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAA---F-R---LNLAQAFNGLGAILGPLLGSSL  163 (422)
T ss_pred             ----------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHH---H-H---HHHHHHhhhhHHHHHHHHHHHH
Confidence                      246788999999999999999999999999998764322   1 2   2233345679999999888877


Q ss_pred             cc
Q 045901          167 QD  168 (171)
Q Consensus       167 ~~  168 (171)
                      ..
T Consensus       164 il  165 (422)
T COG0738         164 IL  165 (422)
T ss_pred             HH
Confidence            55

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.23  E-value=1.2e-10  Score=99.04  Aligned_cols=139  Identities=14%  Similarity=0.116  Sum_probs=110.4

Q ss_pred             eeccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 045901            3 SNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKP   82 (171)
Q Consensus         3 ~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~   82 (171)
                      +++....+|.|+++.+|+++.+++.......+...++.++.|++.||+ |||+.+.++..+..++..++.... .+    
T Consensus       271 ~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~~~~~~~~~~-~~----  344 (485)
T TIGR00711       271 LYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAVGFYWRAFTF-TP----  344 (485)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHHHHHhccC-CC----
Confidence            455667789999999999999999999999999999999999999997 999999999998888887665221 01    


Q ss_pred             CcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHH
Q 045901           83 PVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATF  162 (171)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~  162 (171)
                                    ..+.+.+.....+.++|.|...+.......+..++       ++++++.+++....++|..+++.+
T Consensus       345 --------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~~~~~~~g~~ig~~i  403 (485)
T TIGR00711       345 --------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPP-------HKIARGSSLSNFTRQLGGSIGTAL  403 (485)
T ss_pred             --------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-------HHHhHHHHHHHHHHHHHHHHHHHH
Confidence                          11344455567788999988877777666665532       237889999999999999999988


Q ss_pred             HHhhcc
Q 045901          163 IVYIQD  168 (171)
Q Consensus       163 ~~~i~~  168 (171)
                      .+.+.+
T Consensus       404 ~g~~~~  409 (485)
T TIGR00711       404 ITTILT  409 (485)
T ss_pred             HHHHHH
Confidence            887765

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.23  E-value=1.7e-10  Score=100.06  Aligned_cols=113  Identities=17%  Similarity=0.164  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCccchhHHHH
Q 045901           24 AATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLL  103 (171)
Q Consensus        24 ~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (171)
                      +.+++.+.+.+++.++.++.|+++|++ |||++++++.+++.+|.+++.++.                       +...+
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~-----------------------~~~~l  145 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAP-----------------------SWYQL  145 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhh-----------------------hHHHH
Confidence            458999999999999999999999998 999999999999999999998875                       57789


Q ss_pred             HHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 045901          104 YSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQ  167 (171)
Q Consensus       104 ~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~  167 (171)
                      ++||++.|+|.|+....++.+++|.-+++       .|+.....+.+..++|.+++........
T Consensus       146 ~~GR~l~G~g~G~~~~~~piy~sEiap~~-------~RG~l~~~~~l~~~~Gi~~~~~~~~~~~  202 (513)
T KOG0254|consen  146 IVGRILTGLGVGGASVLAPVYISEIAPAH-------IRGTLVSLYQLFITIGILLGYCINYGTS  202 (513)
T ss_pred             HHHHHHhccchhhhhhcchhhHhhcCChh-------hhHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            99999999999999999999999986532       3788888889999999999866554443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.22  E-value=1.1e-10  Score=95.46  Aligned_cols=141  Identities=16%  Similarity=0.092  Sum_probs=102.8

Q ss_pred             eccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 045901            4 NGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPP   83 (171)
Q Consensus         4 ~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~   83 (171)
                      +.+..+++.|+++++|+++.+++.+.....+...++.+++|+++||+ |||+.+..+..+..+...+..... ..     
T Consensus       236 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~-~~-----  308 (394)
T TIGR00883       236 YLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAALLAVPLLMAL-LD-----  308 (394)
T ss_pred             HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHH-hc-----
Confidence            44566789999889999999999999999999999999999999998 999988766555444332111111 00     


Q ss_pred             cccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHH-HHHHHHHHHHHhHH
Q 045901           84 VCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWY-YVSIAAGSMLSATF  162 (171)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~-y~~~niG~~i~~~~  162 (171)
                                   ..+.+.+.....+.+++.+...+...+++.|.+++++       |++.++.. .....+|..+++.+
T Consensus       309 -------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~-------~~~~~~~~~~~~~~~g~~~~p~~  368 (394)
T TIGR00883       309 -------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV-------RYTGASLAYNLAGAIFGGFAPYI  368 (394)
T ss_pred             -------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc-------eeeEeeehhHhHHHHHhhHHHHH
Confidence                         0123455566678888888899999999999987532       45566653 34556788899999


Q ss_pred             HHhhccccC
Q 045901          163 IVYIQDNLG  171 (171)
Q Consensus       163 ~~~i~~~~g  171 (171)
                      .+++.|+.|
T Consensus       369 ~g~l~~~~g  377 (394)
T TIGR00883       369 AAALVAMTG  377 (394)
T ss_pred             HHHHHHHcC
Confidence            998877543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.22  E-value=1.6e-10  Score=96.68  Aligned_cols=138  Identities=14%  Similarity=0.114  Sum_probs=107.0

Q ss_pred             ceeccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 045901            2 ASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEK   81 (171)
Q Consensus         2 ~~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~   81 (171)
                      +++++..+++.|+++ +|++..+++.....+.++..++.++.|+++||+ |||+.+.++..+..++..++...+   .  
T Consensus       220 ~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~~~~~~~~~---~--  292 (393)
T PRK09705        220 GYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVGFCGFIWLP---L--  292 (393)
T ss_pred             HHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHHHHcc---c--
Confidence            345677789999975 799999999999999999999999999999997 999999999888888776543221   0  


Q ss_pred             CCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhH
Q 045901           82 PPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSAT  161 (171)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~  161 (171)
                                       +.....  .++.+++.|...|.......|..+++      +.+++.+++.+...+++..+++.
T Consensus       293 -----------------~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~------~~~g~~~g~~~~~~~~~~~~gp~  347 (393)
T PRK09705        293 -----------------QLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQP------AIAGKLVAFMQGIGFIIAGLAPW  347 (393)
T ss_pred             -----------------hHHHHH--HHHHHHhccchHHHHHHHHHhhcCCH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence                             111121  24567888888887776667766421      13688899999999999999999


Q ss_pred             HHHhhccccC
Q 045901          162 FIVYIQDNLG  171 (171)
Q Consensus       162 ~~~~i~~~~g  171 (171)
                      +.+++.|..|
T Consensus       348 ~~G~l~~~~g  357 (393)
T PRK09705        348 FSGVLRSISG  357 (393)
T ss_pred             HHHHHHHHhC
Confidence            9999988643

>TIGR00896 CynX cyanate transporter

Probab=99.21  E-value=2.5e-10  Score=93.74  Aligned_cols=138  Identities=14%  Similarity=0.095  Sum_probs=103.6

Q ss_pred             eeccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 045901            3 SNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKP   82 (171)
Q Consensus         3 ~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~   82 (171)
                      ++++..++|.|+++ .|+++.+++.+.+...++..++.++.|+++||+.+||+.+.++.++..++.+.+....       
T Consensus       213 ~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-------  284 (355)
T TIGR00896       213 YYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP-------  284 (355)
T ss_pred             HHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh-------
Confidence            45566778889975 7999999999999999999999999999999974566677788888888876665432       


Q ss_pred             CcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHH
Q 045901           83 PVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATF  162 (171)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~  162 (171)
                                    . +....  ...+.+++.|...|...+...+..++  +    ++++..+++.+...+++..+++.+
T Consensus       285 --------------~-~~~~~--~~~l~g~~~g~~~~~~~~~~~~~~~~--~----~~~g~~~~~~~~~~~~~~~~gp~~  341 (355)
T TIGR00896       285 --------------M-HGLWA--WALVLGLGQGGAFPLALTLIGLRSRQ--A----AQAAALSAMAQSIGYLLAALGPLF  341 (355)
T ss_pred             --------------h-hHHHH--HHHHHHHhhhhHhHHHHHHHHHhccC--H----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          0 11111  34578899999888877776665432  1    125667777777788888999999


Q ss_pred             HHhhccccC
Q 045901          163 IVYIQDNLG  171 (171)
Q Consensus       163 ~~~i~~~~g  171 (171)
                      .+++.|..|
T Consensus       342 ~G~l~~~~g  350 (355)
T TIGR00896       342 VGVLHDISG  350 (355)
T ss_pred             HHHHHHHhc
Confidence            999988654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.21  E-value=3.8e-10  Score=97.07  Aligned_cols=129  Identities=14%  Similarity=0.040  Sum_probs=103.3

Q ss_pred             HHHHhhH-hhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccc
Q 045901           10 MILYLCR-EYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQM   88 (171)
Q Consensus        10 l~~yl~~-~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~   88 (171)
                      +.+.+.+ ++|+|+.|.+.+.+++.....+..++.|++.||+ |+||.+.++.++..+..+++.++...+          
T Consensus        56 l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~i~~~~~~~a~~~~----------  124 (462)
T PRK15034         56 VTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILIIPCVWLGIAVQNP----------  124 (462)
T ss_pred             HHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHccc----------
Confidence            3455544 7999999999999999999999999999999998 999999999999999988777652100          


Q ss_pred             ccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 045901           89 RSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVY  165 (171)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~  165 (171)
                              ..++..+++.+++.|++ |...+.....+++.++++       +++++.+++....|+|..+++.+.+.
T Consensus       125 --------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~-------~rG~A~Gi~~g~G~~G~~l~~~l~p~  185 (462)
T PRK15034        125 --------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKA-------KQGSALGINGGLGNLGVSVMQLVAPL  185 (462)
T ss_pred             --------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHh-------HhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence                    11577888999999998 667788999999998642       37889998877778887766555543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.21  E-value=5.2e-10  Score=91.48  Aligned_cols=136  Identities=14%  Similarity=0.110  Sum_probs=96.8

Q ss_pred             HHHHHHhhHhhC--CChHHHHHHHHHH-----HHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCC
Q 045901            8 PNMILYLCREYN--METTAATNVLFIW-----TAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQE   80 (171)
Q Consensus         8 ~~l~~yl~~~lg--~s~~~a~~~~~~~-----~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~   80 (171)
                      ..+..++.++..  .++++.+...+..     .+...++.++.|+++||+ ||||.+.++.++..++.+++.++...+..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~   91 (394)
T TIGR00883        13 GFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYATI   91 (394)
T ss_pred             HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhhh
Confidence            345666766654  3445554444322     223346788999999998 99999999999999998887765421100


Q ss_pred             CCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 045901           81 KPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSA  160 (171)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~  160 (171)
                                     .......+++++++.|++.|...+..+++++|.++++       +|++...+.....++|.++++
T Consensus        92 ---------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~G~~i~~  149 (394)
T TIGR00883        92 ---------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPG-------KRGFYGSFQQVGAPVGLLLAA  149 (394)
T ss_pred             ---------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcc-------cchHHHHHHHHHHHHHHHHHH
Confidence                           0011235778899999999999999999999987643       267788888888889988888


Q ss_pred             HHHHhh
Q 045901          161 TFIVYI  166 (171)
Q Consensus       161 ~~~~~i  166 (171)
                      .+...+
T Consensus       150 ~~~~~~  155 (394)
T TIGR00883       150 LTVLLL  155 (394)
T ss_pred             HHHHHH
Confidence            766554

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.21  E-value=2e-10  Score=95.71  Aligned_cols=134  Identities=10%  Similarity=-0.110  Sum_probs=104.4

Q ss_pred             eccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 045901            4 NGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPP   83 (171)
Q Consensus         4 ~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~   83 (171)
                      +.+..++|.|+++ .|+++.+++.+...+.+...++.++.|+++||+ |||+.+..+.+...++.+++....        
T Consensus       237 ~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~--------  306 (406)
T PRK11551        237 YFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAALAAAP--------  306 (406)
T ss_pred             HHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhcC--------
Confidence            3445567788864 799999999999999999999999999999998 999999887776666655443221        


Q ss_pred             cccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 045901           84 VCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFI  163 (171)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~  163 (171)
                                     +.+.+.+..++.+++.++..+...++..|.++++       .|++..++.+...++|..+++.+.
T Consensus       307 ---------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~-------~~g~~~g~~~~~~~~g~~~g~~~~  364 (406)
T PRK11551        307 ---------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQ-------VRGTGVGAAVAVGRLGSMAGPLLA  364 (406)
T ss_pred             ---------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchh-------hhhhhhhHHHHhhhHHHHHHhhhH
Confidence                           2233444556677777777888888888887542       268889999999999999999999


Q ss_pred             Hhhccc
Q 045901          164 VYIQDN  169 (171)
Q Consensus       164 ~~i~~~  169 (171)
                      +++.++
T Consensus       365 g~l~~~  370 (406)
T PRK11551        365 GQLLAL  370 (406)
T ss_pred             hhhhcc
Confidence            998764

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.21  E-value=3.3e-10  Score=94.73  Aligned_cols=136  Identities=13%  Similarity=0.197  Sum_probs=91.7

Q ss_pred             ccHHHHHHHhhHhhCCChHHHHHHHHHH-HHHHhhhhhhhHHHhhhccCchhHH-HHHHHHHHHHHHHHHHhhhcCCCCC
Q 045901            5 GLMPNMILYLCREYNMETTAATNVLFIW-TAATNFVPILGAFLADSCMGRYPMI-GFGCIISLLGMVLLWFTAIFPQEKP   82 (171)
Q Consensus         5 gv~~~l~~yl~~~lg~s~~~a~~~~~~~-~~~~~i~~~~~G~laDr~~Gr~~~i-~~~~~l~~lg~~ll~~~~~~~~~~~   82 (171)
                      .+.+.++.|+++++|.|+.+.+...+.. .....++++++|+ +||+ ||||.+ ..+.++..++..+..+++       
T Consensus        33 ~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~-------  103 (393)
T PRK15011         33 LQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGVLACTLFAWNR-------  103 (393)
T ss_pred             HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHHHHHHHHHHhh-------
Confidence            3567889999999999999999997655 4566667777777 9998 998875 455555556655554443       


Q ss_pred             CcccccccCCCCccchhHHHHH-HHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhH
Q 045901           83 PVCDQMRSGCESATASQLMLLY-SAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSAT  161 (171)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~-~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~  161 (171)
                                      +.+.++ .++.+.+.+ +...|....+..|..++++     +....+.++.....++|.++++.
T Consensus       104 ----------------~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lg~~~g~~  161 (393)
T PRK15011        104 ----------------NYFVLLFVGVFLSSFG-STANPQMFALAREHADKTG-----REAVMFSSFLRAQVSLAWVIGPP  161 (393)
T ss_pred             ----------------HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhhcc-----chHHHHHHHHHHHHHHHHHHhhH
Confidence                            344443 334444443 4556666666666543211     11334456777888999999999


Q ss_pred             HHHhhccccC
Q 045901          162 FIVYIQDNLG  171 (171)
Q Consensus       162 ~~~~i~~~~g  171 (171)
                      +.+++.++.|
T Consensus       162 i~~~l~~~~g  171 (393)
T PRK15011        162 LAYALAMGFS  171 (393)
T ss_pred             HHHHHHHhcC
Confidence            9999877544

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.21  E-value=2.7e-10  Score=95.84  Aligned_cols=129  Identities=12%  Similarity=0.153  Sum_probs=117.1

Q ss_pred             HHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccC
Q 045901           12 LYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSG   91 (171)
Q Consensus        12 ~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~   91 (171)
                      +-+.+++|.|..++|.+++.|.....++.++-..+.||+ .|||.++..+.++.++.++.+++.                
T Consensus        37 p~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~lFi~~n~l~alAp----------------   99 (394)
T COG2814          37 PPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLALFIVSNLLSALAP----------------   99 (394)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHHHHHhc----------------
Confidence            344569999999999999999999999999999999997 999999999999999999999875                


Q ss_pred             CCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhccccC
Q 045901           92 CESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG  171 (171)
Q Consensus        92 ~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~~g  171 (171)
                             ++..++++|++.++.-|.+.+...+..+|..+++       ||+++......+..+..++|.-++.++.|.+|
T Consensus       100 -------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~-------~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G  165 (394)
T COG2814         100 -------SFAVLLLARALAGLAHGVFWSIAAALAARLVPPG-------KRGRALALVFTGLTLATVLGVPLGTFLGQLFG  165 (394)
T ss_pred             -------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc-------chhhHHHHHHHHHHHHHHHhccHHHHHHHHhh
Confidence                   6889999999999999999999999999998753       36889999889999999999888888888665

>PRK09952 shikimate transporter; Provisional

Probab=99.19  E-value=5.1e-10  Score=95.12  Aligned_cols=131  Identities=15%  Similarity=0.145  Sum_probs=92.6

Q ss_pred             HHhhHhh--CCChHHHHHHH-----HHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 045901           12 LYLCREY--NMETTAATNVL-----FIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPV   84 (171)
Q Consensus        12 ~yl~~~l--g~s~~~a~~~~-----~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~   84 (171)
                      .+..+++  +.++.+ +.+.     ....++..++.++.|+++||+ ||||.+.++.++..++.+++.+++.+...    
T Consensus        47 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~----  120 (438)
T PRK09952         47 LVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRMLMLTVWMMGIATALIGLLPSFSTI----  120 (438)
T ss_pred             HHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHhcCCcHHHH----
Confidence            3455554  666663 4332     223345667788899999998 99999999999999999888776421100    


Q ss_pred             ccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045901           85 CDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIV  164 (171)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~  164 (171)
                                 .......+++.|++.|++.|+..|....++.|.+++++       |++..+....+..+|.+++..+..
T Consensus       121 -----------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~-------rg~~~~~~~~g~~~G~~l~~~~~~  182 (438)
T PRK09952        121 -----------GWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK-------KAFYSSGVQVGYGVGLLLSTGLVS  182 (438)
T ss_pred             -----------HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC-------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence                       00112357788999999999999999999999876432       566777777788888887766555


Q ss_pred             hh
Q 045901          165 YI  166 (171)
Q Consensus       165 ~i  166 (171)
                      ++
T Consensus       183 ~l  184 (438)
T PRK09952        183 LI  184 (438)
T ss_pred             HH
Confidence            44

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.18  E-value=2.1e-10  Score=96.27  Aligned_cols=136  Identities=10%  Similarity=0.028  Sum_probs=108.9

Q ss_pred             ccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 045901            5 GLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPV   84 (171)
Q Consensus         5 gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~   84 (171)
                      ++...+|.|+++.+|+++.+.+.+.....++..++.++.++++||. ++++.+..+.++..++.+++.+..         
T Consensus       241 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~---------  310 (417)
T PRK10489        241 AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLMP---------  310 (417)
T ss_pred             hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHccc---------
Confidence            4455678899887999999999999999999999999999999996 888888888888887766554321         


Q ss_pred             ccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045901           85 CDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIV  164 (171)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~  164 (171)
                                    +.....+..++.+++.+...+...+++.|..++       +.|++.+++++...++|..+++.+.+
T Consensus       311 --------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~g~~~g~~l~G  369 (417)
T PRK10489        311 --------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPD-------EMLGRINGLWTAQNVTGDAIGAALLG  369 (417)
T ss_pred             --------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-------HHHHHHHHHHHHHHhhhHhHHHHHHH
Confidence                          344456667778888877777777777777642       24789999999999999999999999


Q ss_pred             hhccccC
Q 045901          165 YIQDNLG  171 (171)
Q Consensus       165 ~i~~~~g  171 (171)
                      ++.+..|
T Consensus       370 ~l~~~~g  376 (417)
T PRK10489        370 GLGAMMT  376 (417)
T ss_pred             HHHHHhc
Confidence            9988654

>PRK09952 shikimate transporter; Provisional

Probab=99.18  E-value=5.8e-10  Score=94.79  Aligned_cols=140  Identities=11%  Similarity=0.067  Sum_probs=100.1

Q ss_pred             ceeccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 045901            2 ASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEK   81 (171)
Q Consensus         2 ~~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~   81 (171)
                      ++|.+..+++.|+++++|+++.....+.........++.++.|+++||+ ||||.+..+.++..++.+.+.....  .  
T Consensus       265 ~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~~--~--  339 (438)
T PRK09952        265 TMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIGTLSAFPFFMALE--A--  339 (438)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHH--c--
Confidence            3566777889999999999998766666666677788888999999997 9999999887776655443332210  0  


Q ss_pred             CCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHH-HHHHHHHHh
Q 045901           82 PPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVS-IAAGSMLSA  160 (171)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~-~niG~~i~~  160 (171)
                                     ......+.+..++.+++.+...+...++.+|.++.+       .|.+..++-|.. ..+|+.++|
T Consensus       340 ---------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~-------~r~tg~g~~~~~~~~lgg~~~p  397 (438)
T PRK09952        340 ---------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGAS-------YRYSGAGVGYQVASVVGGGFTP  397 (438)
T ss_pred             ---------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcc-------hhHHHHhHHHHHHHHHHHHHHH
Confidence                           012333444556667888888888899999998752       256677765443 457888889


Q ss_pred             HHHHhhcc
Q 045901          161 TFIVYIQD  168 (171)
Q Consensus       161 ~~~~~i~~  168 (171)
                      .+.+++.+
T Consensus       398 ~i~g~l~~  405 (438)
T PRK09952        398 FIAAALVT  405 (438)
T ss_pred             HHHHHHHH
Confidence            88888865

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.17  E-value=1.6e-10  Score=97.23  Aligned_cols=65  Identities=9%  Similarity=-0.020  Sum_probs=57.9

Q ss_pred             eccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHH
Q 045901            4 NGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMV   69 (171)
Q Consensus         4 ~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~   69 (171)
                      ....++++.|+++++|+|+.+.+.+.+.+.+...+++++.|+++||+ ||||.+.++..+..++..
T Consensus        27 ~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~   91 (420)
T PRK09528         27 SSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLVLFG   91 (420)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHH
Confidence            44678899999999999999999999999999999999999999998 999999887776665543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.17  E-value=8.8e-11  Score=82.43  Aligned_cols=109  Identities=18%  Similarity=0.199  Sum_probs=89.1

Q ss_pred             HHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCccchhHHHHHHHHHHH
Q 045901           31 IWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLM  110 (171)
Q Consensus        31 ~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~  110 (171)
                      .+..+..++.++.|+++||+ ||||.+..+..+..++.+++....                       +.+.+.+.+.+.
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~   61 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSS-----------------------NITVLIIARFLQ   61 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhc-----------------------cHHHHHHHHHHH
Confidence            44567788899999999998 999999999999988877665432                       355677778899


Q ss_pred             HHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhcccc
Q 045901          111 SLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNL  170 (171)
Q Consensus       111 g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~~  170 (171)
                      +++.+...+...++..|.++++       +|++..++.....++|..+++.+.+++.+..
T Consensus        62 g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  114 (141)
T TIGR00880        62 GFGAAFALVAGAALIADIYPPE-------ERGVALGLMSAGIALGPLLGPPLGGVLAQFL  114 (141)
T ss_pred             HHHHHHHHHhHHHHHHHHCChh-------hhhHHHHHHHHhHHHHHHHhHHhHHHHhccc
Confidence            9999999999999999987643       2678888888899999999999888887643

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.17  E-value=3.3e-10  Score=95.17  Aligned_cols=138  Identities=12%  Similarity=0.167  Sum_probs=102.1

Q ss_pred             cHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhc---cCchh-HHHHHHHHHHHHHHHHHHhhhcCCCC
Q 045901            6 LMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSC---MGRYP-MIGFGCIISLLGMVLLWFTAIFPQEK   81 (171)
Q Consensus         6 v~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~---~Gr~~-~i~~~~~l~~lg~~ll~~~~~~~~~~   81 (171)
                      +..+++.|+++++|+++.+++.+.+...+...+..++.|+++||.   +|||| .+.++.+...++.+++....   ...
T Consensus        18 ~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~---~~~   94 (437)
T TIGR00792        18 VSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTP---DFS   94 (437)
T ss_pred             HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCC---CCC
Confidence            446788999999999999999999999999999999999999983   38855 57778888887776664432   110


Q ss_pred             CCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhH
Q 045901           82 PPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSAT  161 (171)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~  161 (171)
                                    ...+...+++...+.+++.+...++..++..|..++  ++    +|++...+.....++|.+++..
T Consensus        95 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~--~~----~R~~~~~~~~~~~~~g~~l~~~  154 (437)
T TIGR00792        95 --------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLD--PR----ERESLSTFRRFGATLGGLLVAV  154 (437)
T ss_pred             --------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCC--HH----HHHHHHHHHHHHHHHHHHHHHH
Confidence                          011344555666778888888888888888887643  22    3677788877788888776655


Q ss_pred             HHHhh
Q 045901          162 FIVYI  166 (171)
Q Consensus       162 ~~~~i  166 (171)
                      +.+.+
T Consensus       155 ~~~~l  159 (437)
T TIGR00792       155 IVLPL  159 (437)
T ss_pred             HHHHH
Confidence            54433

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.16  E-value=5.2e-10  Score=94.74  Aligned_cols=141  Identities=12%  Similarity=0.052  Sum_probs=96.0

Q ss_pred             eeccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHH-HHHhhhcCCCC
Q 045901            3 SNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVL-LWFTAIFPQEK   81 (171)
Q Consensus         3 ~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~l-l~~~~~~~~~~   81 (171)
                      ++++..++|.|+++.+|+++.+++.+.........++.+++|+++||+ ||||.+..+.++..+...+ .....  +  .
T Consensus       254 ~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~--~--~  328 (434)
T PRK15075        254 FYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPALSWLV--A--A  328 (434)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHH--c--C
Confidence            456677899999988999999999888888899999999999999998 9999988765554332211 11111  0  0


Q ss_pred             CCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHH-HHHHHHh
Q 045901           82 PPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIA-AGSMLSA  160 (171)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~n-iG~~i~~  160 (171)
                                     + ......+...+.+++.|...+...++..|.++++.       |++..++.+...+ +++.+++
T Consensus       329 ---------------~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~-------rg~~~g~~~~~~~~~~g~~~p  385 (434)
T PRK15075        329 ---------------P-SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV-------RTAGFSLAYSLATAIFGGFTP  385 (434)
T ss_pred             ---------------C-chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc-------cchheeHHHHHHHHHHhhhHH
Confidence                           0 12223333445566777777777788899886532       5667776443333 3466688


Q ss_pred             HHHHhhccccC
Q 045901          161 TFIVYIQDNLG  171 (171)
Q Consensus       161 ~~~~~i~~~~g  171 (171)
                      .+.+++.|..|
T Consensus       386 ~~~g~i~~~~g  396 (434)
T PRK15075        386 AISTWLIHVTG  396 (434)
T ss_pred             HHHHHHHHhcC
Confidence            88888877543

>PRK03545 putative arabinose transporter; Provisional

Probab=99.16  E-value=1.1e-09  Score=91.16  Aligned_cols=136  Identities=13%  Similarity=-0.004  Sum_probs=100.1

Q ss_pred             eccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 045901            4 NGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPP   83 (171)
Q Consensus         4 ~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~   83 (171)
                      ++...+++.|++++.|+++.+++.+...+.....++.++.|+++||+ |||+. ..+..+..++..++....        
T Consensus       222 ~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~-~~~~~~~~~~~~~l~~~~--------  291 (390)
T PRK03545        222 FTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFL-LIAIALLLVCLLLLLPAA--------  291 (390)
T ss_pred             HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHH-HHHHHHHHHHHHHHHHHh--------
Confidence            34456678888888999999999999999999999999999999997 88764 445554444443332211        


Q ss_pred             cccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 045901           84 VCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFI  163 (171)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~  163 (171)
                                    .+.+.+.+...+.|++.+...+...+.+.|..+    +    +++++.+++....++|..+|+.+.
T Consensus       292 --------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~----~----~~~~~~g~~~~~~~~g~~~G~~~~  349 (390)
T PRK03545        292 --------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP----D----ATDVAMALFSGIFNIGIGAGALLG  349 (390)
T ss_pred             --------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC----C----cHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          134455566667788877777777766666432    1    257788888888899999999999


Q ss_pred             HhhccccC
Q 045901          164 VYIQDNLG  171 (171)
Q Consensus       164 ~~i~~~~g  171 (171)
                      +++.|+.|
T Consensus       350 G~~~~~~g  357 (390)
T PRK03545        350 NQVSLHLG  357 (390)
T ss_pred             HHHHhccC
Confidence            99988764

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.14  E-value=7.3e-10  Score=90.16  Aligned_cols=143  Identities=15%  Similarity=0.033  Sum_probs=95.7

Q ss_pred             eccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhH-HHHHHHHHHHHHHHHHHhhhcCCCCC
Q 045901            4 NGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPM-IGFGCIISLLGMVLLWFTAIFPQEKP   82 (171)
Q Consensus         4 ~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~-i~~~~~l~~lg~~ll~~~~~~~~~~~   82 (171)
                      +....+++.|+++++|+++.+++.+.....+...++.+++|+++||+ |||+. +........++.++..........  
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  308 (399)
T TIGR00893       232 GFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAIIAGLVLSLLMFATNY--  308 (399)
T ss_pred             HHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHHHHHHHHHHHHHHhcc--
Confidence            44566788999999999999999999999999999999999999998 88861 111111122221111111100000  


Q ss_pred             CcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHH
Q 045901           83 PVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATF  162 (171)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~  162 (171)
                                    ............+...+.+ ..+...++.+|..+++       .|++.+++.....++|..+++.+
T Consensus       309 --------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~g~~~~~~i  366 (399)
T TIGR00893       309 --------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGN-------IAGLTGGLINSLGNLGGIVGPIV  366 (399)
T ss_pred             --------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChh-------HHHHHHHHHHHHHHHhhhhhhHH
Confidence                          0012222222223333333 7888888999987642       37889999999999999999999


Q ss_pred             HHhhccccC
Q 045901          163 IVYIQDNLG  171 (171)
Q Consensus       163 ~~~i~~~~g  171 (171)
                      .+++.+..|
T Consensus       367 ~g~l~~~~g  375 (399)
T TIGR00893       367 IGAIAATTG  375 (399)
T ss_pred             hhhhccCCC
Confidence            999988654

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.14  E-value=2.3e-10  Score=96.08  Aligned_cols=137  Identities=19%  Similarity=0.207  Sum_probs=103.5

Q ss_pred             HHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccc
Q 045901           11 ILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRS   90 (171)
Q Consensus        11 ~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~   90 (171)
                      +.|++..++ ++.+.+.+.....+...++.++.++++||+ ||||++.++.++..++.+++.+..               
T Consensus       246 ~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~---------------  308 (437)
T TIGR00792       246 VYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVLGYLIFFFAG---------------  308 (437)
T ss_pred             heeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHcc---------------
Confidence            344444455 466677777778888999999999999998 999999999998888877664421               


Q ss_pred             CCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhcccc
Q 045901           91 GCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNL  170 (171)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~~  170 (171)
                             ++.+.+.+..++.+++.+...+...++++|..+.++.+..++.++.+++.+.+..++|..+++.+.+++.+..
T Consensus       309 -------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~  381 (437)
T TIGR00792       309 -------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII  381 (437)
T ss_pred             -------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                   1334556666788899999999999999998765432111123688899999999999999999999887654


Q ss_pred             C
Q 045901          171 G  171 (171)
Q Consensus       171 g  171 (171)
                      |
T Consensus       382 G  382 (437)
T TIGR00792       382 G  382 (437)
T ss_pred             C
Confidence            3

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.14  E-value=1e-09  Score=90.00  Aligned_cols=137  Identities=20%  Similarity=0.230  Sum_probs=97.6

Q ss_pred             ccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhc----cCchhH-HHHHHHHHHHHHHHHHHhhhcCC
Q 045901            5 GLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSC----MGRYPM-IGFGCIISLLGMVLLWFTAIFPQ   79 (171)
Q Consensus         5 gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~----~Gr~~~-i~~~~~l~~lg~~ll~~~~~~~~   79 (171)
                      ++.....+.+.+++|+|.++.+..... .....+ .++.|+++||+    +||||. ++.+.++..+....+.+..  + 
T Consensus         5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~--~-   79 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV--P-   79 (356)
T ss_pred             hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC--c-
Confidence            344444444455889999999999755 333344 77999999997    489997 4667777776655554432  0 


Q ss_pred             CCCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 045901           80 EKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLS  159 (171)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~  159 (171)
                                       ..+.+.+....++.+++.+...+...+++.|.++++       +|+++.++...+.++|.+++
T Consensus        80 -----------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~r~~~~~~~~~~~~~G~~~~  135 (356)
T TIGR00901        80 -----------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDE-------ELGYGSTIYIVGYRAGMLLS  135 (356)
T ss_pred             -----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh-------hhchHHHHHHHHHHHHHHHH
Confidence                             113444555555677888888999999999988532       37888899999999999999


Q ss_pred             hHHHHhhcccc
Q 045901          160 ATFIVYIQDNL  170 (171)
Q Consensus       160 ~~~~~~i~~~~  170 (171)
                      +.+.+++.+..
T Consensus       136 ~~l~~~l~~~~  146 (356)
T TIGR00901       136 GSLALVLASPE  146 (356)
T ss_pred             HHHHHHHhhhc
Confidence            98887776543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.14  E-value=8.1e-10  Score=91.82  Aligned_cols=131  Identities=18%  Similarity=0.255  Sum_probs=98.6

Q ss_pred             cHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 045901            6 LMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVC   85 (171)
Q Consensus         6 v~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~   85 (171)
                      ...++|.|+++ .|.++.+++.+.........++.++.|+++||+ |||+.+..+..+..++...+. ..          
T Consensus       219 ~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~~----------  285 (381)
T PRK03633        219 LYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-SQ----------  285 (381)
T ss_pred             HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-hh----------
Confidence            34567888875 699999999999999999999999999999998 999999999888887765432 11          


Q ss_pred             cccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 045901           86 DQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVY  165 (171)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~  165 (171)
                                     ......+.+.+++.+...|...+.+.|..+++       +++.....+....++|.++++.+.++
T Consensus       286 ---------------~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~-------~~~~~~~~~~~~~~lG~~igp~~~G~  343 (381)
T PRK03633        286 ---------------AAMAPALFILGAAGFTLYPVAMAWACEKVEHH-------ELVAMNQALLLSYTVGSLLGPSFTAM  343 (381)
T ss_pred             ---------------HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           11233445666666667788777777765321       24556666677889999999999999


Q ss_pred             hccccC
Q 045901          166 IQDNLG  171 (171)
Q Consensus       166 i~~~~g  171 (171)
                      +.|+.|
T Consensus       344 l~~~~g  349 (381)
T PRK03633        344 LMQNYS  349 (381)
T ss_pred             HHHHhC
Confidence            987653

>TIGR00895 2A0115 benzoate transport

Probab=99.14  E-value=7.1e-10  Score=90.93  Aligned_cols=130  Identities=12%  Similarity=-0.010  Sum_probs=98.4

Q ss_pred             ccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 045901            5 GLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPV   84 (171)
Q Consensus         5 gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~   84 (171)
                      .+..+++ ++.+++|+++.+++.......++..++.+++|+++||+ |||+.+....+......++.....         
T Consensus       268 ~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------  336 (398)
T TIGR00895       268 FLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVFAVLVGSTLF---------  336 (398)
T ss_pred             HHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHHHHHhh---------
Confidence            3444555 66678899999999999999999999999999999998 998655544444333332222111         


Q ss_pred             ccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045901           85 CDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIV  164 (171)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~  164 (171)
                                    +.....+..++.+++.+...+...+...|.++++       .|++.+++.....++|..+++.+.+
T Consensus       337 --------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~g~~~g~~~~~~~~g~~~g~~~~G  395 (398)
T TIGR00895       337 --------------SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTA-------IRATGVGWAIGIGRLGAIIGPILAG  395 (398)
T ss_pred             --------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHH-------HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence                          2344566667888999999999999999987532       3788999999999999999999988


Q ss_pred             hh
Q 045901          165 YI  166 (171)
Q Consensus       165 ~i  166 (171)
                      ++
T Consensus       396 ~l  397 (398)
T TIGR00895       396 YL  397 (398)
T ss_pred             hc
Confidence            75

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.14  E-value=4.6e-10  Score=97.12  Aligned_cols=121  Identities=12%  Similarity=0.033  Sum_probs=104.5

Q ss_pred             HhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCc
Q 045901           16 REYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESA   95 (171)
Q Consensus        16 ~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~   95 (171)
                      +....+........+++.++..+++++.|+++||+ |||++++.++++..++.+..+++.                    
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a~--------------------  169 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFAP--------------------  169 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHhC--------------------
Confidence            45667888999999999999999999999999995 999999999999999998887765                    


Q ss_pred             cchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 045901           96 TASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQD  168 (171)
Q Consensus        96 ~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~  168 (171)
                         +++.+++.|++.|++.++...+...+++|.++++.       |+....+ +.....+..+++.+.+|+.+
T Consensus       170 ---~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~-------R~~~~~~-~~~~~~~~~~~~~~~a~~~~  231 (521)
T KOG0255|consen  170 ---NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ-------RGLALTL-GGFFFVGGLMLPAGAAYITR  231 (521)
T ss_pred             ---cHHHHHHHHHHHHhhccchhHHhHhhheeecCcch-------hhHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence               57889999999999999999999999999987532       6777777 66777777777777777655

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.13  E-value=4.5e-10  Score=96.78  Aligned_cols=128  Identities=19%  Similarity=0.176  Sum_probs=114.1

Q ss_pred             hHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCC
Q 045901           15 CREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCES   94 (171)
Q Consensus        15 ~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~   94 (171)
                      +.++++++.+.+.+.+.+..+..++.+.+|+++||+ |-||++..+.++..+++++...+..                  
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~------------------  125 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS------------------  125 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence            347899999999999999999999999999999998 9999999999999999999988762                  


Q ss_pred             ccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhccc-cC
Q 045901           95 ATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDN-LG  171 (171)
Q Consensus        95 ~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~-~g  171 (171)
                         .+.+.+++.|+++|++.|...|+...+.+...|+++       |+++....+.+..+|.+++..+++++.++ +|
T Consensus       126 ---~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E-------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~G  193 (466)
T KOG2532|consen  126 ---IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE-------RSTFIAILTAGSQLGTIITMPVSGLLCESSLG  193 (466)
T ss_pred             ---hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH-------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC
Confidence               234567899999999999999999999999987432       78899999999999999999999999887 54

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.13  E-value=8.2e-10  Score=95.41  Aligned_cols=147  Identities=14%  Similarity=0.166  Sum_probs=105.1

Q ss_pred             HHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhh----ccCchhHHHHH-HHHHHHHHHHHHHhhhcCCCC
Q 045901            7 MPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADS----CMGRYPMIGFG-CIISLLGMVLLWFTAIFPQEK   81 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr----~~Gr~~~i~~~-~~l~~lg~~ll~~~~~~~~~~   81 (171)
                      .+++++|+ +++|.++..++.+..+..+...+..++.|+++||    + ||||.++++ .+...++.+++..+..+....
T Consensus        24 ~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~  101 (477)
T TIGR01301        24 LSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAALVAFAVILIGFAADIGHLF  101 (477)
T ss_pred             HHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHHHHHHHHHHHHhCchhhhhc
Confidence            45667776 5899999999999999999999999999999995    6 999998875 666666666555543211000


Q ss_pred             CCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhH
Q 045901           82 PPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSAT  161 (171)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~  161 (171)
                      -+      .............+.+++.+.-+.....+++..++++|..+++++     +++.++.|+.+..++|.++++.
T Consensus       102 ~~------~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~-----~~~~a~~~~~~~~~lG~ilg~~  170 (477)
T TIGR01301       102 GD------NLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR-----RTRIANAYFSFFMAIGNVLGYA  170 (477)
T ss_pred             cc------cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            00      000000011123455666677788888899999999999976432     2467999999999999999998


Q ss_pred             HHHhh
Q 045901          162 FIVYI  166 (171)
Q Consensus       162 ~~~~i  166 (171)
                      +.++.
T Consensus       171 ~g~~~  175 (477)
T TIGR01301       171 AGAYS  175 (477)
T ss_pred             HHHHH
Confidence            87764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.13  E-value=7.3e-10  Score=92.22  Aligned_cols=134  Identities=14%  Similarity=0.174  Sum_probs=100.7

Q ss_pred             eccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 045901            4 NGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPP   83 (171)
Q Consensus         4 ~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~   83 (171)
                      ..+..+++.|+.+ .|++  +++.....+.++..++.++.|++.||+ ||||.+..+.++..++.+++....        
T Consensus       233 ~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~--------  300 (399)
T PRK05122        233 GTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLAP--------  300 (399)
T ss_pred             HHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc--------
Confidence            3455677788764 4663  445666777788888999999999997 999999999888888876665432        


Q ss_pred             cccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 045901           84 VCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFI  163 (171)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~  163 (171)
                                     +.+.+.+..++.+++.+...|.......|..++       +++++.+++++...++|..+++.+.
T Consensus       301 ---------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~~~~~~~~  358 (399)
T PRK05122        301 ---------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPP-------QNRGAALGAYSVFLDLSLGITGPLA  358 (399)
T ss_pred             ---------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           234556677889999888877777666665532       2378999999999999998888888


Q ss_pred             HhhccccC
Q 045901          164 VYIQDNLG  171 (171)
Q Consensus       164 ~~i~~~~g  171 (171)
                      +++.+..|
T Consensus       359 g~l~~~~g  366 (399)
T PRK05122        359 GLVASWFG  366 (399)
T ss_pred             HHHHHHcC
Confidence            88876543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.12  E-value=1.4e-09  Score=90.53  Aligned_cols=135  Identities=12%  Similarity=0.086  Sum_probs=110.1

Q ss_pred             eccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 045901            4 NGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPP   83 (171)
Q Consensus         4 ~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~   83 (171)
                      .....+.++|++ ++|.++.+++.+.........+..++.+++.||+ |+|+.+.++.++..+..+++.+.+        
T Consensus       222 ~~~~~~~~~~l~-~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~~~~~~~~~~--------  291 (382)
T TIGR00902       222 AAYYGFSAIYWQ-AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVGRWAIIGAIE--------  291 (382)
T ss_pred             HHHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHHHHHHHHhHh--------
Confidence            445668889996 4899999999999998899999999999999998 999999999999999988776543        


Q ss_pred             cccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHH-HHHHHHHHHHhHH
Q 045901           84 VCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYY-VSIAAGSMLSATF  162 (171)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y-~~~niG~~i~~~~  162 (171)
                                     +.+.++....+.++..|...+....++.|. +++       ++.++.+.+. ....+|..+++.+
T Consensus       292 ---------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~-------~~~~~q~~~~~~~~g~g~~~g~~~  348 (382)
T TIGR00902       292 ---------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGS-------EIAKLQALYNALAMGGLIAIFTAF  348 (382)
T ss_pred             ---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHh-------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           456667777899999999999988888764 321       2466666654 4567999999999


Q ss_pred             HHhhccccC
Q 045901          163 IVYIQDNLG  171 (171)
Q Consensus       163 ~~~i~~~~g  171 (171)
                      +|++.|+.|
T Consensus       349 ~G~l~~~~g  357 (382)
T TIGR00902       349 AGFIYPTLG  357 (382)
T ss_pred             HHHHHHhcc
Confidence            999998754

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.12  E-value=1.6e-09  Score=90.82  Aligned_cols=134  Identities=16%  Similarity=0.134  Sum_probs=97.2

Q ss_pred             cHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 045901            6 LMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVC   85 (171)
Q Consensus         6 v~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~   85 (171)
                      +...++.|+++ .|+++.+++.+.....++..++.++.|+++||+ |||+.+..+.++..++.+++....   .      
T Consensus       250 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~---~------  318 (426)
T PRK12307        250 IFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIP---Q------  318 (426)
T ss_pred             HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHc---c------
Confidence            45677888875 699999999999999999999999999999998 999999999888776654443221   0      


Q ss_pred             cccccCCCCccchhHHHHHHHHHHHHH--hccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 045901           86 DQMRSGCESATASQLMLLYSAFGLMSL--GGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFI  163 (171)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~l~g~--g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~  163 (171)
                                 . ...  ....++.++  ...+..+..+..+.|.++++       ++++..++.+...++|..+++.+.
T Consensus       319 -----------~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~g~~~g~~~~~~~~~~~~gp~~~  377 (426)
T PRK12307        319 -----------D-NYL--LLGACLFGLMATNVGVGGLVPKFLYDYFPLE-------VRGLGTGLIYNLAATSGTFNSMAA  377 (426)
T ss_pred             -----------c-cHH--HHHHHHHHHHHhcccHhHHHHHHHHHhCcHH-------HHhhhhhHHHHHHhHHHHHHHHHH
Confidence                       0 111  122223333  22333455666777877532       378899998899999999999999


Q ss_pred             HhhccccC
Q 045901          164 VYIQDNLG  171 (171)
Q Consensus       164 ~~i~~~~g  171 (171)
                      +++.+..|
T Consensus       378 g~l~~~~g  385 (426)
T PRK12307        378 TWLGITMG  385 (426)
T ss_pred             HHHHHccc
Confidence            99887654

>PRK12382 putative transporter; Provisional

Probab=99.12  E-value=7.5e-10  Score=92.06  Aligned_cols=134  Identities=14%  Similarity=0.159  Sum_probs=102.3

Q ss_pred             eccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 045901            4 NGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPP   83 (171)
Q Consensus         4 ~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~   83 (171)
                      ..+..+++.|+++ .++++  ++.....+..+..++.++.|++.||+ ||||.+..+..+..++.+++....        
T Consensus       233 ~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~--------  300 (392)
T PRK12382        233 AVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLAP--------  300 (392)
T ss_pred             hHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHcc--------
Confidence            3455567778764 46654  45566667777888999999999997 999999999998888876654432        


Q ss_pred             cccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 045901           84 VCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFI  163 (171)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~  163 (171)
                                     +.+...+...+.+++.+...|.......|.+++       ++|++.+++++...++|..+++.+.
T Consensus       301 ---------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~~ig~~~~  358 (392)
T PRK12382        301 ---------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPS-------QVRGTALGGYAAFQDIAYGVSGPLA  358 (392)
T ss_pred             ---------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           234556677788888888888777777776542       2478999999999999999999999


Q ss_pred             HhhccccC
Q 045901          164 VYIQDNLG  171 (171)
Q Consensus       164 ~~i~~~~g  171 (171)
                      +++.|+.|
T Consensus       359 g~l~~~~g  366 (392)
T PRK12382        359 GMLATSFG  366 (392)
T ss_pred             HHHHHHhC
Confidence            99887654

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.11  E-value=7.2e-10  Score=93.73  Aligned_cols=142  Identities=19%  Similarity=0.206  Sum_probs=114.4

Q ss_pred             cHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 045901            6 LMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVC   85 (171)
Q Consensus         6 v~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~   85 (171)
                      ....++.|.+..+|.+ ...+.+.....+.+.++.++.++++||+ ||||++..+.++..++.+++.+...         
T Consensus       244 ~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~~~~~~~~~---------  312 (428)
T PF13347_consen  244 MNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAALGFLLLFFLGP---------  312 (428)
T ss_pred             hhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHHHHHHHHHHHh---------
Confidence            3445667777777777 5667777788889999999999999998 9999999999999999988776541         


Q ss_pred             cccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 045901           86 DQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVY  165 (171)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~  165 (171)
                                  ++.+.+++...+.+++.|...+...++.+|..+.++.+.++++.+..++.+.+...++..++..+.+.
T Consensus       313 ------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~  380 (428)
T PF13347_consen  313 ------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGL  380 (428)
T ss_pred             ------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHH
Confidence                        24677888888999999999999999999998865433222345788888889999999999988887


Q ss_pred             hcccc
Q 045901          166 IQDNL  170 (171)
Q Consensus       166 i~~~~  170 (171)
                      +.+..
T Consensus       381 ~l~~~  385 (428)
T PF13347_consen  381 LLALV  385 (428)
T ss_pred             HHHHh
Confidence            76543

>PTZ00207 hypothetical protein; Provisional

Probab=99.11  E-value=1.5e-09  Score=95.83  Aligned_cols=132  Identities=15%  Similarity=0.159  Sum_probs=103.2

Q ss_pred             HHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccc
Q 045901            9 NMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQM   88 (171)
Q Consensus         9 ~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~   88 (171)
                      .....+++++|++..+.+.+.+..... .+..+++|+++||+ |||+++.++.++..+|++++.++.. ...        
T Consensus        48 v~s~~L~~~lgls~~~l~~i~svg~~~-g~~~lp~G~L~Dr~-G~R~vllig~ll~~iG~ll~ala~~-~~i--------  116 (591)
T PTZ00207         48 LISGAMQARYNLTQRDLSTITTVGIAV-GYFLLPYSFIYDYL-GPRPIFVLSMTVFCLGTLLFALTFQ-EVI--------  116 (591)
T ss_pred             HHHHHHHHHhCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhc-ccc--------
Confidence            344567889999999999988774444 34566789999998 9999999999999999999887631 000        


Q ss_pred             ccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHH-HhHHHHhhc
Q 045901           89 RSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSML-SATFIVYIQ  167 (171)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i-~~~~~~~i~  167 (171)
                              ..+.+.+++.+.+.|+|.+...+.....+.+.+++        +|+++.++.....++|+++ ++....++.
T Consensus       117 --------~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~--------~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~  180 (591)
T PTZ00207        117 --------EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS--------NRGAVVAIMKTFTGLGSAILGSIQLAFFS  180 (591)
T ss_pred             --------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    12577888999999999999999889899998852        2688999999999999864 555554443

>PRK09848 glucuronide transporter; Provisional

Probab=99.09  E-value=4.1e-10  Score=95.68  Aligned_cols=140  Identities=15%  Similarity=0.181  Sum_probs=104.7

Q ss_pred             HHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 045901            8 PNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQ   87 (171)
Q Consensus         8 ~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~   87 (171)
                      ...+.|+++.+|.++...+...........++.++.++++||+ |+||.+.++.++..++.+++.+..            
T Consensus       249 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i~~~~~~~~~------------  315 (448)
T PRK09848        249 ASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTCGYLLFFWVS------------  315 (448)
T ss_pred             hhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHcC------------
Confidence            3455677777888777666555554566778889999999998 999999999999998887665421            


Q ss_pred             cccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 045901           88 MRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQ  167 (171)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~  167 (171)
                               ..+.+.+++...+.++|.+...+...++.+|..+.++-+..+++.+.+++.+.+...+|..++..+.+++.
T Consensus       316 ---------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l  386 (448)
T PRK09848        316 ---------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL  386 (448)
T ss_pred             ---------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     11345566777889999999999999999998765432111123577888888999999999988888765


Q ss_pred             cc
Q 045901          168 DN  169 (171)
Q Consensus       168 ~~  169 (171)
                      +.
T Consensus       387 ~~  388 (448)
T PRK09848        387 GL  388 (448)
T ss_pred             HH
Confidence            43

>TIGR00889 2A0110 nucleoside transporter

Probab=99.09  E-value=1.8e-09  Score=91.46  Aligned_cols=135  Identities=12%  Similarity=0.051  Sum_probs=104.0

Q ss_pred             HHHHHHhhHhhCCCh--------HHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCC
Q 045901            8 PNMILYLCREYNMET--------TAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQ   79 (171)
Q Consensus         8 ~~l~~yl~~~lg~s~--------~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~   79 (171)
                      .+++.|++ +.|.++        .+.+...+...+...++.++.|+++||+ ||||++.++.++..++..++.....   
T Consensus       229 ~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~~~~~v~~~l~~~~~~---  303 (418)
T TIGR00889       229 IFGNGFLH-EFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSLVAWALRFGFFAYGDP---  303 (418)
T ss_pred             HhHHHHHH-HhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHcCc---
Confidence            34456665 455444        5668888888889999999999999998 9999999999999888766654210   


Q ss_pred             CCCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHH-HHHHHHHHH
Q 045901           80 EKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYY-VSIAAGSML  158 (171)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y-~~~niG~~i  158 (171)
                                      .....+.+++..++.+++.+...+....+++|.+++       ++|++.+++.+ ....+|..+
T Consensus       304 ----------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~-------~~~g~~~g~~~~~~~~lg~~i  360 (418)
T TIGR00889       304 ----------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPV-------HIRASAQGLFTLMCNGFGSLL  360 (418)
T ss_pred             ----------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHhhHHHH
Confidence                            001234566777889999998889989999998753       24789999986 567899999


Q ss_pred             HhHHHHhhcccc
Q 045901          159 SATFIVYIQDNL  170 (171)
Q Consensus       159 ~~~~~~~i~~~~  170 (171)
                      ++.+.+++.|+.
T Consensus       361 Gp~l~G~l~~~~  372 (418)
T TIGR00889       361 GYILSGVMVEKM  372 (418)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.07  E-value=2.1e-09  Score=87.88  Aligned_cols=133  Identities=10%  Similarity=0.054  Sum_probs=102.4

Q ss_pred             ccHHHHHHHhhHh--hCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 045901            5 GLMPNMILYLCRE--YNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKP   82 (171)
Q Consensus         5 gv~~~l~~yl~~~--lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~   82 (171)
                      ++..+++.|++++  +|+++.+++.....+.....++.++++++.||+ |+||.+.++.++..++.++....+       
T Consensus       158 ~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~~~~~~l~~~~~-------  229 (310)
T TIGR01272       158 SAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLAVLLSIGAALTH-------  229 (310)
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHcC-------
Confidence            3556799999864  799999999999999999999999999999997 999999999888887765443321       


Q ss_pred             CcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHH
Q 045901           83 PVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATF  162 (171)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~  162 (171)
                                      ... ...+..+.+++.+.+.|...+...+.++++.      +..+.  +. ....+|.++.|.+
T Consensus       230 ----------------~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~------~~asa--i~-~~~~~Gg~i~P~l  283 (310)
T TIGR01272       230 ----------------GYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT------SQGSG--IL-CLAIVGGAIVPLL  283 (310)
T ss_pred             ----------------CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhhHH--HH-HHHHhcchHHHHH
Confidence                            111 2235568899999999999988888775422      12333  32 4566889999999


Q ss_pred             HHhhccccC
Q 045901          163 IVYIQDNLG  171 (171)
Q Consensus       163 ~~~i~~~~g  171 (171)
                      .+++.|..|
T Consensus       284 ~G~lad~~g  292 (310)
T TIGR01272       284 QGSLADCLG  292 (310)
T ss_pred             HHHHHHhcc
Confidence            999988654

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.06  E-value=1.8e-09  Score=101.31  Aligned_cols=118  Identities=14%  Similarity=0.073  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHH--HHHHHHHHHhhhcCCCCCCcccccccCCCCccchhH
Q 045901           23 TAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIIS--LLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQL  100 (171)
Q Consensus        23 ~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~--~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (171)
                      ...++...++.+...++.+++|+++||+ ||||++.....+.  .....+..+..                      .++
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~----------------------~s~  108 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL----------------------NSV  108 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH----------------------hhH
Confidence            4567778889999999999999999998 9999864422222  21211122111                      157


Q ss_pred             HHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhcccc
Q 045901          101 MLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNL  170 (171)
Q Consensus       101 ~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~~  170 (171)
                      +.+++.++++|++.++..|...+++.|.++++       ++.++.+++.++.++|.++++.+++++.+..
T Consensus       109 ~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~-------~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~  171 (1140)
T PRK06814        109 PLLFAALFLMGIHSALFGPIKYSILPDHLNKD-------ELLGANALVEAGTFIAILLGTIIGGLATISG  171 (1140)
T ss_pred             HHHHHHHHHHHHHHHhhchHHHHhhHhhcCcc-------ccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            78899999999999999999999999999753       2688999999999999999999999987643

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.06  E-value=2e-09  Score=92.01  Aligned_cols=137  Identities=12%  Similarity=0.010  Sum_probs=102.8

Q ss_pred             eeccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhcc-CchhHHHHHH--HHHHHHHHHHHHhhhcCC
Q 045901            3 SNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCM-GRYPMIGFGC--IISLLGMVLLWFTAIFPQ   79 (171)
Q Consensus         3 ~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~-Gr~~~i~~~~--~l~~lg~~ll~~~~~~~~   79 (171)
                      +++...+++.|+++ +|+++.+++.+.+...++..++.+++|+++||.. ++|+...++.  ++..++.+++....    
T Consensus       257 ~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~----  331 (455)
T TIGR00892       257 FFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAG----  331 (455)
T ss_pred             ccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence            45666788899864 7999999999999999999999999999999841 3344333333  33333333322221    


Q ss_pred             CCCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 045901           80 EKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLS  159 (171)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~  159 (171)
                                         +.+.+++..++.+++.+...++..+.+.|..+++       ++++.++++....++|.+++
T Consensus       332 -------------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~-------~~g~~~g~~~~~~~lg~~ig  385 (455)
T TIGR00892       332 -------------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQ-------RFSSAVGLVTIVECCAVLIG  385 (455)
T ss_pred             -------------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHH-------HHhhHHhHHHHHHHHHHHcc
Confidence                               3455667778899999999999999999987532       36888999999999999999


Q ss_pred             hHHHHhhcccc
Q 045901          160 ATFIVYIQDNL  170 (171)
Q Consensus       160 ~~~~~~i~~~~  170 (171)
                      +.+.+++.+..
T Consensus       386 p~i~G~l~~~~  396 (455)
T TIGR00892       386 PPLAGRLVDAT  396 (455)
T ss_pred             ccceeeeehhc
Confidence            99999887754

>PRK10504 putative transporter; Provisional

Probab=99.05  E-value=2.2e-09  Score=91.45  Aligned_cols=134  Identities=10%  Similarity=-0.042  Sum_probs=103.8

Q ss_pred             HHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 045901            8 PNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQ   87 (171)
Q Consensus         8 ~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~   87 (171)
                      ...+.|++..+|.++.+++.+.....+...++.++.|+++||+ |||+.+.++.++..++.+++....   .        
T Consensus       282 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~---~--------  349 (471)
T PRK10504        282 FMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALVSLLFMLVA---L--------  349 (471)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHhcc---c--------
Confidence            4567788878999999999999999898888889999999998 999999999998887766554421   0        


Q ss_pred             cccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 045901           88 MRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQ  167 (171)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~  167 (171)
                               ....+.+.+..++.+++.+...+..+....+..+++       .++..++++....++|..+++.+.+.+.
T Consensus       350 ---------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~g~~ig~~i~g~ll  413 (471)
T PRK10504        350 ---------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDN-------LASSGNSLLSMIMQLSMSIGVTIAGLLL  413 (471)
T ss_pred             ---------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-------hccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     012233445566778888888888888888876542       2577888888999999999988888775


Q ss_pred             cc
Q 045901          168 DN  169 (171)
Q Consensus       168 ~~  169 (171)
                      +.
T Consensus       414 ~~  415 (471)
T PRK10504        414 GL  415 (471)
T ss_pred             HH
Confidence            54

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.05  E-value=2.4e-09  Score=89.07  Aligned_cols=130  Identities=12%  Similarity=0.113  Sum_probs=93.1

Q ss_pred             cHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCch----hHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 045901            6 LMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRY----PMIGFGCIISLLGMVLLWFTAIFPQEK   81 (171)
Q Consensus         6 v~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~----~~i~~~~~l~~lg~~ll~~~~~~~~~~   81 (171)
                      +.++++.|++ ++|.|+.+++.+.+.+.....++.++.|.++||+ ||+    |.+.+...+..+   .....       
T Consensus        23 ~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~---~~~~~-------   90 (382)
T PRK11128         23 FLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLFAV---AFWFG-------   90 (382)
T ss_pred             HhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHHHH---HHHHh-------
Confidence            4557778885 6799999999999999999999999999999998 984    333332222211   11111       


Q ss_pred             CCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhH
Q 045901           82 PPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSAT  161 (171)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~  161 (171)
                                     .++.+.+++.+.+.+++.+...|...++..|..+         ++++.+++.....++|..+++.
T Consensus        91 ---------------~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~---------~~~~a~~~~~~~~~lg~~igp~  146 (382)
T PRK11128         91 ---------------AHSFWLLFVAIGLFNLFFSPLVPLTDALANTWQK---------QIGLDYGKVRLWGSIAFVIGSA  146 (382)
T ss_pred             ---------------cccHHHHHHHHHHHHHHHcccccHHHHHHHHHHh---------hccCCcchHHHHHHHHHHHHHH
Confidence                           1246777788888999999999988888777521         1344444555566889999999


Q ss_pred             HHHhhccccC
Q 045901          162 FIVYIQDNLG  171 (171)
Q Consensus       162 ~~~~i~~~~g  171 (171)
                      +++++.+++|
T Consensus       147 lgg~l~~~~g  156 (382)
T PRK11128        147 LTGKLVSWFG  156 (382)
T ss_pred             HHHHHHHHcC
Confidence            9988877543

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.04  E-value=8.9e-10  Score=91.89  Aligned_cols=117  Identities=15%  Similarity=0.044  Sum_probs=98.2

Q ss_pred             CChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCccchh
Q 045901           20 METTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQ   99 (171)
Q Consensus        20 ~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (171)
                      -+..-+|.+-+.|.+.+.++++..|-+|||| |||+++.+|++...+.+++...+.                       +
T Consensus        65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~-----------------------~  120 (451)
T KOG2615|consen   65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSR-----------------------N  120 (451)
T ss_pred             ccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHH-----------------------H
Confidence            3556788999999999999999999999999 999999999999999888777765                       4


Q ss_pred             HHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 045901          100 LMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQD  168 (171)
Q Consensus       100 ~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~  168 (171)
                      +..+.++|++.|+-.|-. ..+-++++|..++++       |...+.....+..+|.++||++++|+.+
T Consensus       121 F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~-------r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  121 FAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY-------RPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh-------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence            556777799999988765 556788999987643       4667777778899999999999999876

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.04  E-value=5e-09  Score=87.19  Aligned_cols=134  Identities=10%  Similarity=0.063  Sum_probs=102.6

Q ss_pred             ccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 045901            5 GLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPV   84 (171)
Q Consensus         5 gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~   84 (171)
                      +....++.|++ +.|+++.+.+.+.........+..++.|++.||+ |+|+.+.++.++..++.+++...+         
T Consensus       223 ~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~~~~~~~~~---------  291 (382)
T PRK11128        223 AYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVRWGLMGSTT---------  291 (382)
T ss_pred             hHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHhhh---------
Confidence            45667788885 5899999999999988888888889999999998 999999999998888776554432         


Q ss_pred             ccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHH-HHHHHHHHHHhHHH
Q 045901           85 CDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYY-VSIAAGSMLSATFI  163 (171)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y-~~~niG~~i~~~~~  163 (171)
                                    +.+.+++..++.+++.+...+....+..++ +   ++    ++++..+++. ....+|..+++.+.
T Consensus       292 --------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~---~~----~~~~~~~~~~~~~~~~g~~ig~~i~  349 (382)
T PRK11128        292 --------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-P---GS----EVIRLQALYSALAMGGSIAIMTVLS  349 (382)
T ss_pred             --------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C---Hh----hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          355566777888888888877777666553 2   21    2456666654 45567888999999


Q ss_pred             HhhccccC
Q 045901          164 VYIQDNLG  171 (171)
Q Consensus       164 ~~i~~~~g  171 (171)
                      +++.|..|
T Consensus       350 G~l~~~~g  357 (382)
T PRK11128        350 GFLYQHLG  357 (382)
T ss_pred             HHHHHhcc
Confidence            99988654

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.03  E-value=4.2e-09  Score=87.52  Aligned_cols=134  Identities=15%  Similarity=0.079  Sum_probs=98.0

Q ss_pred             HHHHHHHhhHhhCCChH---HHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 045901            7 MPNMILYLCREYNMETT---AATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPP   83 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~---~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~   83 (171)
                      .+.++.|..+..+....   ..+.+..+..+...++.+..|+++||+ |||+.+..+.++..++.+++...+        
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~--------  309 (408)
T PRK09874        239 APILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSFVQ--------  309 (408)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHhc--------
Confidence            34566777765443222   234555566677788888999999998 999999999888877766554332        


Q ss_pred             cccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 045901           84 VCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFI  163 (171)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~  163 (171)
                                     +.+.+++...+.+++.|...|...+...|..+++       .+++.++++....++|..+++.+.
T Consensus       310 ---------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~g~~~gp~~~  367 (408)
T PRK09874        310 ---------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQ-------IAGRIFSYNQSFRDIGNVTGPLMG  367 (408)
T ss_pred             ---------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcc-------cceeeehHHHHHHHHHHHhhHHHH
Confidence                           2345666777889999998888888877755432       257888888888999999999999


Q ss_pred             HhhccccC
Q 045901          164 VYIQDNLG  171 (171)
Q Consensus       164 ~~i~~~~g  171 (171)
                      +++.++.|
T Consensus       368 G~l~~~~g  375 (408)
T PRK09874        368 AAISANYG  375 (408)
T ss_pred             HHHHhhcc
Confidence            99887654

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.03  E-value=8.9e-09  Score=86.09  Aligned_cols=135  Identities=10%  Similarity=-0.065  Sum_probs=104.0

Q ss_pred             HHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccc
Q 045901            9 NMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQM   88 (171)
Q Consensus         9 ~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~   88 (171)
                      ..|.|+.+++|+++.+.+.......++..++.++.|+++||+ ||||.+.++.++..++.+++......+          
T Consensus       237 ~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~~~~~~~~~~~----------  305 (406)
T PRK15402        237 LSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGLLLAALATVIS----------  305 (406)
T ss_pred             HhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHcc----------
Confidence            467788888999999999888878888889999999999998 999999999998888887776543110          


Q ss_pred             ccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 045901           89 RSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQD  168 (171)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~  168 (171)
                              ..+...+.++.++.++|.+...+.......+..    ++    ++++....+++..++|..+++.+.+++.+
T Consensus       306 --------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~----~~----~~g~~~~~~~~~~~~~~~~g~~~~~~l~~  369 (406)
T PRK15402        306 --------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSS----DV----SKGTVSAAMGMLSMLIFTVGIELSKHAYL  369 (406)
T ss_pred             --------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhc----cc----cccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                    113445667788899999888777666543321    11    25778888888888999999999988876


Q ss_pred             cc
Q 045901          169 NL  170 (171)
Q Consensus       169 ~~  170 (171)
                      +.
T Consensus       370 ~~  371 (406)
T PRK15402        370 GG  371 (406)
T ss_pred             CC
Confidence            54

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.02  E-value=6.4e-09  Score=84.59  Aligned_cols=140  Identities=14%  Similarity=0.170  Sum_probs=94.7

Q ss_pred             eccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHH--HHHHHHHHHHHhhhcCCCC
Q 045901            4 NGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCI--ISLLGMVLLWFTAIFPQEK   81 (171)
Q Consensus         4 ~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~--l~~lg~~ll~~~~~~~~~~   81 (171)
                      +++..+++.|+++++|+++.+++.....+.+...++.++.|+++||..+||+.......  ...++......   .+   
T Consensus       233 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---  306 (379)
T TIGR00881       233 TGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL---NP---  306 (379)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc---Cc---
Confidence            34556788999999999999999999999999999999999999986344443332221  11111111111   00   


Q ss_pred             CCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhH
Q 045901           82 PPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSAT  161 (171)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~  161 (171)
                                     ..+.....+...+.+....+..+.......|..+++       +|++..+++....++|..+++.
T Consensus       307 ---------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~g~~~g~~~~~~~~g~~~~~~  364 (379)
T TIGR00881       307 ---------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKK-------AAGTAAGFVGFFAYLGGILAGL  364 (379)
T ss_pred             ---------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcc-------hhHHHHHHHHHhhhhhhhhhhh
Confidence                           012233344445555555555555566677776532       3788999999999999999999


Q ss_pred             HHHhhccccC
Q 045901          162 FIVYIQDNLG  171 (171)
Q Consensus       162 ~~~~i~~~~g  171 (171)
                      +.+++.|+.|
T Consensus       365 ~~g~l~~~~g  374 (379)
T TIGR00881       365 PLGYLADGFG  374 (379)
T ss_pred             hHHHHHHhhc
Confidence            9999988764

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.02  E-value=2.6e-09  Score=89.83  Aligned_cols=132  Identities=8%  Similarity=0.060  Sum_probs=99.4

Q ss_pred             HHHHHhhHhh---CCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 045901            9 NMILYLCREY---NMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVC   85 (171)
Q Consensus         9 ~l~~yl~~~l---g~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~   85 (171)
                      .++.|+.+.+   +.+..+.+.+.+.......++.+++|+++||+ ||||.+.++.++..++.+++.++.          
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~~----------  313 (420)
T PRK09528        245 QFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFAT----------  313 (420)
T ss_pred             HHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhcc----------
Confidence            4677776543   56777888889888888899999999999998 999999999998888877765543          


Q ss_pred             cccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHH-HHHHHHHHHHHHhHHHH
Q 045901           86 DQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSW-YYVSIAAGSMLSATFIV  164 (171)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~-~y~~~niG~~i~~~~~~  164 (171)
                                   +.+.+.....+.+++.+...+....++.|.++++.       +.+.+.+ +....++|..+++.+.+
T Consensus       314 -------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-------~a~~~~~~~~~~~~lg~~ig~~~~G  373 (420)
T PRK09528        314 -------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL-------SATIYLVGFQFAKQLGAVFLSTLAG  373 (420)
T ss_pred             -------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc-------eeeeeeehHHHHHHHHHHHHHHHHH
Confidence                         23455566677788877777777777777775322       3444443 45667899999999999


Q ss_pred             hhccccC
Q 045901          165 YIQDNLG  171 (171)
Q Consensus       165 ~i~~~~g  171 (171)
                      ++.|..|
T Consensus       374 ~l~~~~G  380 (420)
T PRK09528        374 NLYDSIG  380 (420)
T ss_pred             HHHHhhC
Confidence            9988654

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.01  E-value=3.3e-09  Score=89.49  Aligned_cols=137  Identities=14%  Similarity=-0.023  Sum_probs=88.5

Q ss_pred             eeccHHHHHHHhhHh-hCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhH-HHHHHHHHHHHHHHHHHhhhcCCC
Q 045901            3 SNGLMPNMILYLCRE-YNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPM-IGFGCIISLLGMVLLWFTAIFPQE   80 (171)
Q Consensus         3 ~~gv~~~l~~yl~~~-lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~-i~~~~~l~~lg~~ll~~~~~~~~~   80 (171)
                      ++++..++|.|+++. .++++.+++...........++.+++|+++||+ +|||. +....++..++.. +....     
T Consensus       258 ~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~~~~~-~~~~~-----  330 (412)
T TIGR02332       258 LSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAAAGWL-LASAT-----  330 (412)
T ss_pred             HHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHHHHHH-HHHhc-----
Confidence            566778999999863 578889999999999999999999999999997 87775 4444444444332 21111     


Q ss_pred             CCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 045901           81 KPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSA  160 (171)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~  160 (171)
                                      . +......+..+.+.|.....+.......|.++    +   ++|++.+++.+...++|..+++
T Consensus       331 ----------------~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~---~~~~~a~g~~~~~~~~g~~~~p  386 (412)
T TIGR02332       331 ----------------D-HNLIQLLGIIMASMGSFSAMAIFWTTPDQSIS----L---QARAIAIAVINATGNIGSALSP  386 (412)
T ss_pred             ----------------C-CHHHHHHHHHHHHHHhhhhhhHHHhhcccccc----h---HHHHHHHHHHHHhhhhhhhhhh
Confidence                            0 11112222223333332222222222233332    2   2478999999999999999999


Q ss_pred             HHHHhhcccc
Q 045901          161 TFIVYIQDNL  170 (171)
Q Consensus       161 ~~~~~i~~~~  170 (171)
                      .+.+.+.+..
T Consensus       387 ~~~g~i~~~~  396 (412)
T TIGR02332       387 FLIGILKDAT  396 (412)
T ss_pred             hhcccccccC
Confidence            9999888754

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.01  E-value=3.1e-09  Score=96.15  Aligned_cols=112  Identities=17%  Similarity=0.110  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCccchhHHHHHH
Q 045901           26 TNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYS  105 (171)
Q Consensus        26 ~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (171)
                      ........++..++.+++|+++||+ |||+++.++.++..++.+++.+..                       +...+++
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~-----------------------s~~~ll~  653 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGN-----------------------SESAMIA  653 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHc-----------------------cHHHHHH
Confidence            3444556688899999999999997 999999999999998887776543                       1233445


Q ss_pred             HHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 045901          106 AFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQD  168 (171)
Q Consensus       106 ~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~  168 (171)
                      .+++.++..+...+...++++|.++.+       .|++++++.+...++|+++++.+++++.+
T Consensus       654 ~~~l~g~~~~~~~~~~~a~~aEl~Pt~-------~Rgta~Gi~~~~~rlGaiigp~i~g~L~~  709 (742)
T TIGR01299       654 LLCLFGGLSIAAWNALDVLTVELYPSD-------KRATAFGFLNALCKAAAVLGILIFGSFVG  709 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556677777777888899999998642       48999999999999999999998886643

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00897 2A0118 polyol permease family

Probab=99.00  E-value=1.1e-08  Score=85.80  Aligned_cols=140  Identities=9%  Similarity=0.051  Sum_probs=96.4

Q ss_pred             eeccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHH-HHHHHHHHHHHHHHHhhhcCCCC
Q 045901            3 SNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIG-FGCIISLLGMVLLWFTAIFPQEK   81 (171)
Q Consensus         3 ~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~-~~~~l~~lg~~ll~~~~~~~~~~   81 (171)
                      +++...++|.|++ ++|+++.+++.+.........++.++.|+++||+ ||||.+. .+.+...++.+.+......  . 
T Consensus       238 ~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~~~~~~l~~~~~~--~-  312 (402)
T TIGR00897       238 LFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCGIFTLALYYIPQH--F-  312 (402)
T ss_pred             HHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHHHHc--c-
Confidence            4566677888885 5899999999999999999999999999999997 9988764 3333333333333221100  0 


Q ss_pred             CCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhH
Q 045901           82 PPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSAT  161 (171)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~  161 (171)
                                     .++.+...+...+.+++.+...+ ..+...|. +   |+    +|++.+++++...++|..+++.
T Consensus       313 ---------------~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~-~---~~----~~g~~~g~~~~~~~lg~~~gp~  368 (402)
T TIGR00897       313 ---------------GHSFAVALIIAIALGIFLAGYVP-LAAVFPTL-A---PK----HKGAAMSVLNLSAGLSAFLAPA  368 (402)
T ss_pred             ---------------CCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhh-C---cc----hhHHHHHHHHHHHHHHHHHHHH
Confidence                           01234445556667777766544 34444443 2   21    3789999999999999999999


Q ss_pred             HHHhhccccC
Q 045901          162 FIVYIQDNLG  171 (171)
Q Consensus       162 ~~~~i~~~~g  171 (171)
                      +.+++.|..|
T Consensus       369 i~g~l~~~~g  378 (402)
T TIGR00897       369 IAVLFIGFFG  378 (402)
T ss_pred             HHHHHHhhcc
Confidence            9998887543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.00  E-value=4.5e-09  Score=86.23  Aligned_cols=130  Identities=12%  Similarity=0.050  Sum_probs=95.1

Q ss_pred             eeccHHHHHHHhhHhhCCChHHHHHHHHHHH-HHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 045901            3 SNGLMPNMILYLCREYNMETTAATNVLFIWT-AATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEK   81 (171)
Q Consensus         3 ~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~-~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~   81 (171)
                      ++.+...++.|+++ +|+++.+.+.+..... ....++.+++|+++||+ ||||.+.++.++..++..+...........
T Consensus       225 ~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  302 (356)
T TIGR00901       225 DSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQALTNAGFVWLASNGHHD  302 (356)
T ss_pred             HHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            45567788899986 9999999998888766 56788899999999998 999999999988887766554432000000


Q ss_pred             CCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHH
Q 045901           82 PPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIA  153 (171)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~n  153 (171)
                              + .+   ..+.+.+....++.+++.+...+...++..|..+++.       +++.++.++...|
T Consensus       303 --------~-~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~-------~g~~~g~~~~~~~  355 (356)
T TIGR00901       303 --------G-IT---FPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF-------GATQMALLSSLSA  355 (356)
T ss_pred             --------c-cc---cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc-------cHHHHHHHHHHHh
Confidence                    0 00   0134555666678899999999999999999887543       6888887766554

>TIGR00889 2A0110 nucleoside transporter

Probab=98.99  E-value=5.5e-09  Score=88.48  Aligned_cols=96  Identities=13%  Similarity=0.053  Sum_probs=74.6

Q ss_pred             HHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 045901            7 MPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCD   86 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~   86 (171)
                      .+.++.|+++++|++..+.|++.+.+..+..+++++.|+++||+.+||+.+.++.++..++..+..+.+           
T Consensus        22 ~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~-----------   90 (418)
T TIGR00889        22 LVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVT-----------   90 (418)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhc-----------
Confidence            378899999999999999999999999999999999999999983447788888887777666554432           


Q ss_pred             ccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhh
Q 045901           87 QMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFG  125 (171)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~  125 (171)
                                  +.+.+.+.+.+.+++.+...+...+..
T Consensus        91 ------------~~~~~~~~~~l~~~~~~~~~~~~~~l~  117 (418)
T TIGR00889        91 ------------TPAGMFPVLLANSLAYMPTIALTNSIS  117 (418)
T ss_pred             ------------CHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence                        345556666677777666666555543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.99  E-value=8e-09  Score=87.99  Aligned_cols=141  Identities=12%  Similarity=0.105  Sum_probs=88.0

Q ss_pred             eeccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhcc-CchhHH-HHHHHHHHHHHHHHHHhhhcCCC
Q 045901            3 SNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCM-GRYPMI-GFGCIISLLGMVLLWFTAIFPQE   80 (171)
Q Consensus         3 ~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~-Gr~~~i-~~~~~l~~lg~~ll~~~~~~~~~   80 (171)
                      ++++..++|.|++++.|++..+++.....+.....++.+++|+++||+. +||+.. .....+..++.+++....     
T Consensus       269 ~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~-----  343 (452)
T PRK11273        269 RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNP-----  343 (452)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhc-----
Confidence            3566778999999999999999999988888999999999999999972 333322 222333333333222211     


Q ss_pred             CCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHH-HH
Q 045901           81 KPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSM-LS  159 (171)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~-i~  159 (171)
                                      ..+.....+.+.+++............+..|.++++       ++++..+++....++|.. ++
T Consensus       344 ----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~-------~~g~~~g~~~~~~~~g~~~~g  400 (452)
T PRK11273        344 ----------------AGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKK-------AAGTAAGFTGLFGYLGGSVAA  400 (452)
T ss_pred             ----------------ccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChh-------hhhhHHHHHHHHHHHHHHHhh
Confidence                            001222333334444432222222233455666432       378899998888888865 47


Q ss_pred             hHHHHhhccccC
Q 045901          160 ATFIVYIQDNLG  171 (171)
Q Consensus       160 ~~~~~~i~~~~g  171 (171)
                      +.+.+++.|..|
T Consensus       401 ~~v~g~l~~~~g  412 (452)
T PRK11273        401 SAIVGYTVDFFG  412 (452)
T ss_pred             hhhHHHHHHHhc
Confidence            888888877543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.98  E-value=3.6e-09  Score=85.47  Aligned_cols=129  Identities=17%  Similarity=0.202  Sum_probs=105.2

Q ss_pred             eccHHHHHHHhhHhhCCC-hHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 045901            4 NGLMPNMILYLCREYNME-TTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKP   82 (171)
Q Consensus         4 ~gv~~~l~~yl~~~lg~s-~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~   82 (171)
                      +.....++.|+.+++|++ ..+++.+.........++.++.|+++||+ |+|+...+......++.+.+.....      
T Consensus       223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------  295 (352)
T PF07690_consen  223 SGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGALGLLLLPF------  295 (352)
T ss_dssp             HHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHCCSHH------
T ss_pred             HHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            445677888989999999 89999999999999999999999999997 9998888888888777766544331      


Q ss_pred             CcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 045901           83 PVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSA  160 (171)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~  160 (171)
                                    ..+........++.+++.+...+....+..|..+++       ++++..+.+....++|..++|
T Consensus       296 --------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  296 --------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPE-------YRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             --------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTC-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH-------HHHHHHHHHHHHHHHHHHHCC
Confidence                          113455566777899999999999999999987532       378999999999999999886

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.98  E-value=9e-09  Score=85.73  Aligned_cols=130  Identities=10%  Similarity=-0.020  Sum_probs=95.3

Q ss_pred             cHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHH----HHHHHHHHHHHHHHHHhhhcCCCC
Q 045901            6 LMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMI----GFGCIISLLGMVLLWFTAIFPQEK   81 (171)
Q Consensus         6 v~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i----~~~~~l~~lg~~ll~~~~~~~~~~   81 (171)
                      ..++++.|++ ++|+|..+.+.+.+.+.....++.++.|+++||+ ||++..    .++..+..+.  +...+       
T Consensus        23 ~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~~~--~~~~~-------   91 (382)
T TIGR00902        23 FLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFAAA--FSAGA-------   91 (382)
T ss_pred             HHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHH--HHHhh-------
Confidence            3567788885 6899999999999999999999999999999998 985433    2222222211  11111       


Q ss_pred             CCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhH
Q 045901           82 PPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSAT  161 (171)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~  161 (171)
                                      ++.+.+++.+.+.+.+.+...|...++..|.     +    +++++.++......++|.++++.
T Consensus        92 ----------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~-----~----~~~~~~~g~~~~~~slG~~~g~~  146 (382)
T TIGR00902        92 ----------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW-----Q----KQFGLDYGKVRLIGSAAFIIGSA  146 (382)
T ss_pred             ----------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH-----H----HHcCCCccHHHHHHHHHHHHHHH
Confidence                            1467777888888888888888877765442     1    12566788888888999999999


Q ss_pred             HHHhhccccC
Q 045901          162 FIVYIQDNLG  171 (171)
Q Consensus       162 ~~~~i~~~~g  171 (171)
                      +.+++.+++|
T Consensus       147 l~g~l~~~~g  156 (382)
T TIGR00902       147 LFGGLIGMFD  156 (382)
T ss_pred             HHHHHHHHcC
Confidence            9998887654

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.97  E-value=5.4e-09  Score=87.91  Aligned_cols=134  Identities=12%  Similarity=0.093  Sum_probs=111.0

Q ss_pred             HHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 045901            7 MPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCD   86 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~   86 (171)
                      .+.+.+++++++|+|+.|.++++..-.+...+..+.-|++.||+ |.||...+++++..+-.+.++++...|        
T Consensus        33 ~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~l~~IP~~~~~~a~~~~--------  103 (417)
T COG2223          33 FSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSMLLLLIPCLGLAFAVTYP--------  103 (417)
T ss_pred             HHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHHHHHHHHHHHHHHccCC--------
Confidence            44566888899999999999999999999999999999999998 999999999999999888888876322        


Q ss_pred             ccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901           87 QMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI  166 (171)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i  166 (171)
                                  +++.+++...+.|++ |...+...++++..||++       +.+.+.+++- .-|+|..+...+.+.+
T Consensus       104 ------------~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~-------~qG~AlGI~g-~GN~G~av~q~~~P~v  162 (417)
T COG2223         104 ------------STWQLLVIGLLLGLA-GASFAVGMPNASFFFPKE-------KQGLALGIAG-AGNLGVAVAQLVAPLV  162 (417)
T ss_pred             ------------chHHHHHHHHHHhcc-cceehcccccccccCChh-------hhhHHHHHhc-cccccHHHHHHHHHHH
Confidence                        345677777788888 555677778888988653       3689999988 8899999988888877


Q ss_pred             cccc
Q 045901          167 QDNL  170 (171)
Q Consensus       167 ~~~~  170 (171)
                      ...+
T Consensus       163 ~~~~  166 (417)
T COG2223         163 AVAF  166 (417)
T ss_pred             HHHH
Confidence            6543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.97  E-value=2.1e-08  Score=83.82  Aligned_cols=138  Identities=12%  Similarity=0.014  Sum_probs=94.2

Q ss_pred             HHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccc
Q 045901           11 ILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRS   90 (171)
Q Consensus        11 ~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~   90 (171)
                      .++..++.|++..+++.......+...++.+++|+++||+ |||+.+.++.++..++.+++.+... +...+        
T Consensus       307 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------  376 (481)
T TIGR00879       307 SPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGA-SFVTG--------  376 (481)
T ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhh-cccCC--------
Confidence            3444457899999999999999999999999999999998 9999999998888888776653221 10000        


Q ss_pred             CCCCccchhHHHHHHHHHHHHHhcc-ccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 045901           91 GCESATASQLMLLYSAFGLMSLGGG-SIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDN  169 (171)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~l~g~g~G-~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~  169 (171)
                        ++. . ..........+...+.+ +..+....+..|.++++       +|++...+.....++|.++++.+.+++.++
T Consensus       377 --~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~  445 (481)
T TIGR00879       377 --SSK-S-SGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLS-------LRPKGISIAVAANWLANFIVGFLFPTMLES  445 (481)
T ss_pred             --ccc-c-hhHHHHHHHHHHHHHHHccccCeehhhhhccCChH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              000 0 01222222223222222 23456666668877532       368889999999999999999998888765

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09669 putative symporter YagG; Provisional

Probab=98.96  E-value=6.6e-09  Score=88.27  Aligned_cols=134  Identities=13%  Similarity=0.200  Sum_probs=97.9

Q ss_pred             cHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhh----ccCch-hHHHHHHHHHHHHHHHHHHhhhcCCC
Q 045901            6 LMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADS----CMGRY-PMIGFGCIISLLGMVLLWFTAIFPQE   80 (171)
Q Consensus         6 v~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr----~~Gr~-~~i~~~~~l~~lg~~ll~~~~~~~~~   80 (171)
                      +..+++.|+++.+|+|+.+++.+..+..+...+.-++.|+++||    + ||| +.++.+.+...+...++..   .|..
T Consensus        28 ~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~-Grrrp~il~~~~~~~i~~~l~f~---~p~~  103 (444)
T PRK09669         28 VMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRH-GQFRPYLLWFAIPFGVVCLLTFY---TPDF  103 (444)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCC-CCcchhHHHHHHHHHHHHHHHHh---CCCC
Confidence            45678999999999999999999999999999999999999999    5 774 5565777777776654432   2221


Q ss_pred             CCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 045901           81 KPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSA  160 (171)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~  160 (171)
                      .+              ..+...+++...+..++......+..++.+|..++  ++    +|.+...+.....++|..+++
T Consensus       104 ~~--------------~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~--~~----eR~~l~~~r~~~~~~G~~i~~  163 (444)
T PRK09669        104 GA--------------TGKIIYACVTYILLSLVYTAINVPYCAMPGAITND--PR----ERHSLQSWRFALSFIGGLIVS  163 (444)
T ss_pred             Cc--------------chHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCC--HH----HHHHHHHHHHHHHHHHHHHHH
Confidence            10              12345555555666777777888888999997643  32    267777888788888877766


Q ss_pred             HHH
Q 045901          161 TFI  163 (171)
Q Consensus       161 ~~~  163 (171)
                      .+.
T Consensus       164 ~~~  166 (444)
T PRK09669        164 VIA  166 (444)
T ss_pred             HHH
Confidence            543

>PRK09669 putative symporter YagG; Provisional

Probab=98.96  E-value=6.9e-09  Score=88.13  Aligned_cols=127  Identities=16%  Similarity=0.121  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCccchhHHH
Q 045901           23 TAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLML  102 (171)
Q Consensus        23 ~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (171)
                      ...+.+.....+...++.++.++++||+ |||+.+..+.++..+..+.+.+..                     +++.+.
T Consensus       264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~  321 (444)
T PRK09669        264 DLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILSALIFFIP---------------------PSNVWL  321 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHhC---------------------cchHHH
Confidence            3344455555677778888999999997 999999988877665443332211                     114455


Q ss_pred             HHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhccccC
Q 045901          103 LYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG  171 (171)
Q Consensus       103 ~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~~g  171 (171)
                      +++..++.+++.+...+...++++|..+.++.+..+++.+..++.+.+..++|..+++.+.+++.+..|
T Consensus       322 ~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G  390 (444)
T PRK09669        322 IFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD  390 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            677778899999999999999999988754322111234667888888999999999999988876543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.95  E-value=7.3e-09  Score=88.93  Aligned_cols=133  Identities=8%  Similarity=0.082  Sum_probs=96.5

Q ss_pred             ccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhh----hccCc-hhHHHHHHHHHHHHHHHHHHhhhcCC
Q 045901            5 GLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLAD----SCMGR-YPMIGFGCIISLLGMVLLWFTAIFPQ   79 (171)
Q Consensus         5 gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laD----r~~Gr-~~~i~~~~~l~~lg~~ll~~~~~~~~   79 (171)
                      .+..+++.|+++.+|+++..++.+..+.-+...+..++.|+++|    |+ || |+-++++.+...++..++...   |.
T Consensus        24 ~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i~~~llf~~---p~   99 (473)
T PRK10429         24 IVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSVVLFLLFSA---HL   99 (473)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHHHHHHHHcC---CC
Confidence            34567899999999999999999999999999999999999999    65 88 666677888877776555321   21


Q ss_pred             CCCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 045901           80 EKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLS  159 (171)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~  159 (171)
                      ..              .......+++..++..++......+..++++|..++  ++|    |.+..++-....++|..+.
T Consensus       100 ~~--------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~--~~e----R~~l~~~~~~~~~ig~~~~  159 (473)
T PRK10429        100 FE--------------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLD--KRE----REQLVPYPRFFASLAGFVT  159 (473)
T ss_pred             CC--------------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCC--HHH----HHHHHHHHHHHHHHHHHHH
Confidence            10              112334445555677888888999999999997653  332    5667777666667765554


Q ss_pred             hH
Q 045901          160 AT  161 (171)
Q Consensus       160 ~~  161 (171)
                      ..
T Consensus       160 ~~  161 (473)
T PRK10429        160 AG  161 (473)
T ss_pred             HH
Confidence            43

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.95  E-value=1.8e-08  Score=87.18  Aligned_cols=139  Identities=16%  Similarity=0.123  Sum_probs=96.0

Q ss_pred             cHHHHHHHhhHhhCCChHHHHHHHH-HHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 045901            6 LMPNMILYLCREYNMETTAATNVLF-IWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPV   84 (171)
Q Consensus         6 v~~~l~~yl~~~lg~s~~~a~~~~~-~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~   84 (171)
                      .....++|+.+++|+++.+.+.+.. ...+...++.+++|+++||+ ||||.+.++.++..++.+........       
T Consensus       241 ~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~l~~~~l~~~-------  312 (491)
T PRK11010        241 AMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSNAGYWLLSIT-------  312 (491)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence            3456778888889999999999875 55578999999999999998 99998887777666655433221100       


Q ss_pred             ccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045901           85 CDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIV  164 (171)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~  164 (171)
                                  ..+...+.+...+..+..|...+...++..|..+++.       .++.+++.+...++|..+++.+.+
T Consensus       313 ------------~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~-------~~t~~gl~~s~~~lg~~~~~~~~G  373 (491)
T PRK11010        313 ------------DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF-------SATQFALLSALSAVGRVYVGPVAG  373 (491)
T ss_pred             ------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        0022333344445444445445666777778776543       355677777888999888888899


Q ss_pred             hhccccC
Q 045901          165 YIQDNLG  171 (171)
Q Consensus       165 ~i~~~~g  171 (171)
                      ++.|+.|
T Consensus       374 ~l~~~~G  380 (491)
T PRK11010        374 WFVEAHG  380 (491)
T ss_pred             HHHHHhC
Confidence            9888654

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.94  E-value=1.3e-08  Score=86.27  Aligned_cols=140  Identities=14%  Similarity=0.077  Sum_probs=86.0

Q ss_pred             eccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCc--hhHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 045901            4 NGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGR--YPMIGFGCIISLLGMVLLWFTAIFPQEK   81 (171)
Q Consensus         4 ~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr--~~~i~~~~~l~~lg~~ll~~~~~~~~~~   81 (171)
                      +++..++|.|+++++|++..+++.....+.++..++.+++|+++||+..|  ++......+...+....+..   .+.  
T Consensus       260 ~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~---~~~--  334 (434)
T PRK11663        260 AAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWL---MPF--  334 (434)
T ss_pred             HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHH---ccc--
Confidence            34566789999889999999999999999999999999999999997322  22222221111112111111   111  


Q ss_pred             CCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhH
Q 045901           82 PPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSAT  161 (171)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~  161 (171)
                                     . +........++++++.....+......+|.+++       +.+++..++.+...++|..+++.
T Consensus       335 ---------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~~~~p~  391 (434)
T PRK11663        335 ---------------A-SYVMQAACFFTIGFFVFGPQMLIGMAAAECSHK-------EAAGAATGFVGLFAYLGAALSGY  391 (434)
T ss_pred             ---------------c-cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccH-------hhHHhHHHHHHHHHHHHHHHhcc
Confidence                           0 111122222223322211111223344565432       23789999999999999999999


Q ss_pred             HHHhhccccC
Q 045901          162 FIVYIQDNLG  171 (171)
Q Consensus       162 ~~~~i~~~~g  171 (171)
                      +.+++.|..|
T Consensus       392 ~~g~l~~~~g  401 (434)
T PRK11663        392 PLAKVLEIWH  401 (434)
T ss_pred             cHHHHHHhcc
Confidence            9999887543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.93  E-value=2.4e-08  Score=86.35  Aligned_cols=143  Identities=17%  Similarity=0.157  Sum_probs=111.8

Q ss_pred             ccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCch--hHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 045901            5 GLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRY--PMIGFGCIISLLGMVLLWFTAIFPQEKP   82 (171)
Q Consensus         5 gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~--~~i~~~~~l~~lg~~ll~~~~~~~~~~~   82 (171)
                      .+..+..+|.++++|+++.+...+.....+.+.++.++.|++.||+ |.|  +++.++.++..+-.+.-.+ ...+....
T Consensus       299 ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~~~~i~~~g~~-G~~~~~~g  376 (477)
T PF11700_consen  299 TIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLILWIIIPLYGLF-GFWPSFFG  376 (477)
T ss_pred             HHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHHHH-HhhhcccC
Confidence            4566778999999999999999999999999999999999999998 999  8888888777433222211 11111000


Q ss_pred             CcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHH
Q 045901           83 PVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATF  162 (171)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~  162 (171)
                                    .++.+.+++.-++.|+..|..++..-++.++..|+++       ...+|+.|...-...+.+||.+
T Consensus       377 --------------~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~-------e~efFgly~i~gk~ss~lGPll  435 (477)
T PF11700_consen  377 --------------LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR-------EAEFFGLYAITGKASSWLGPLL  435 (477)
T ss_pred             --------------cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch-------hhHHHHHHHHHHHHHHHHHHHH
Confidence                          1134556666678999999999999999999987643       4789999999999999999999


Q ss_pred             HHhhcccc
Q 045901          163 IVYIQDNL  170 (171)
Q Consensus       163 ~~~i~~~~  170 (171)
                      .+.+.+..
T Consensus       436 ~g~i~~~t  443 (477)
T PF11700_consen  436 FGLITDAT  443 (477)
T ss_pred             HHHHHHHh
Confidence            99887753

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.93  E-value=2.9e-08  Score=83.14  Aligned_cols=132  Identities=13%  Similarity=0.092  Sum_probs=99.1

Q ss_pred             HHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhc----cCchh-HHHHHHHHHHHHHHHHHHhhhcCCCC
Q 045901            7 MPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSC----MGRYP-MIGFGCIISLLGMVLLWFTAIFPQEK   81 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~----~Gr~~-~i~~~~~l~~lg~~ll~~~~~~~~~~   81 (171)
                      ..-+|.|+++ .|+|.++.+.+......  .+..++.|+++||+    +|||| .+.++.++..++...+.+..  +   
T Consensus        19 ~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~--~---   90 (402)
T PRK11902         19 SGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCP--P---   90 (402)
T ss_pred             HHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcC--c---
Confidence            3467889985 59999999999665554  68889999999997    26765 68888888887777665532  0   


Q ss_pred             CCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhH
Q 045901           82 PPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSAT  161 (171)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~  161 (171)
                                     ..+.+.+++..++.+...+...+...++..|..+++       +|+++..+...+.++|.+++..
T Consensus        91 ---------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~-------~r~~~~~~~~~g~~~g~i~g~~  148 (402)
T PRK11902         91 ---------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPE-------ERGAGAAVKVLGYRLAMLVSGG  148 (402)
T ss_pred             ---------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh-------hhhHHHHHHHHHHHHHHHHHhH
Confidence                           124555555555677888889999999999987542       2678888888888899998888


Q ss_pred             HHHhhcc
Q 045901          162 FIVYIQD  168 (171)
Q Consensus       162 ~~~~i~~  168 (171)
                      +..++.+
T Consensus       149 l~~~l~~  155 (402)
T PRK11902        149 LALWLAD  155 (402)
T ss_pred             HHHHHHh
Confidence            7777655

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.93  E-value=1.6e-08  Score=88.38  Aligned_cols=127  Identities=14%  Similarity=0.085  Sum_probs=105.3

Q ss_pred             hhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCcc
Q 045901           17 EYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESAT   96 (171)
Q Consensus        17 ~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~   96 (171)
                      ++.-|+...+.+.........+..+++|.++||+ .|||.++.+.++..+..+++.+......                 
T Consensus        39 ~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~~~~L~~l~~~~~-----------------  100 (524)
T PF05977_consen   39 QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALVALLLAVLAFFGL-----------------  100 (524)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHHHHHHHHhCc-----------------
Confidence            6678899999999999999999999999999998 9999999999998877766665442111                 


Q ss_pred             chhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 045901           97 ASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDN  169 (171)
Q Consensus        97 ~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~  169 (171)
                       .+.+.+++..++.+++.++..|.-.+.+.|..+++       +..++..+.....|+..++||.+++.+...
T Consensus       101 -~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~-------~L~~A~al~s~~~niar~iGPalgG~Lva~  165 (524)
T PF05977_consen  101 -LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKE-------DLPAANALNSISFNIARIIGPALGGILVAF  165 (524)
T ss_pred             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh-------hHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence             14566777778999999999999999999998643       267788888899999999999888876543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.92  E-value=3.8e-09  Score=89.05  Aligned_cols=128  Identities=14%  Similarity=0.140  Sum_probs=112.7

Q ss_pred             HHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccc
Q 045901           11 ILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRS   90 (171)
Q Consensus        11 ~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~   90 (171)
                      .+++.++.++|.+|.|.+.+++.++.-++-.+.|.++||. ++|+.+-+++++..+..+++.+++               
T Consensus        52 ~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai~nil~Gfs~---------------  115 (448)
T COG2271          52 MPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAIVNILFGFSP---------------  115 (448)
T ss_pred             cHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHHHHHHHhhhh---------------
Confidence            3667778889999999999999999999999999999998 999999999999999999888765               


Q ss_pred             CCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHH--Hhhcc
Q 045901           91 GCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFI--VYIQD  168 (171)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~--~~i~~  168 (171)
                              +...+.+-..+-|.-+|.-.|++.-.++..++.++       |++...++..+-|+|..+.+.++  +++..
T Consensus       116 --------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e-------RG~~~siWn~shNiGGal~~~~~~la~~~~  180 (448)
T COG2271         116 --------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE-------RGTWWSIWNTSHNIGGALAPLVALLAFFAF  180 (448)
T ss_pred             --------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc-------cCceEEEehhhhhcccchHHHHHHHHHHHh
Confidence                    46667777789999999999999999999997532       79999999999999988888877  66654


Q ss_pred             c
Q 045901          169 N  169 (171)
Q Consensus       169 ~  169 (171)
                      +
T Consensus       181 ~  181 (448)
T COG2271         181 H  181 (448)
T ss_pred             c
Confidence            3

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.92  E-value=2.8e-08  Score=82.76  Aligned_cols=142  Identities=15%  Similarity=0.089  Sum_probs=96.5

Q ss_pred             ccHHHHHHHhhHhhCCChHHHHHHHHHHHH-HHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 045901            5 GLMPNMILYLCREYNMETTAATNVLFIWTA-ATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPP   83 (171)
Q Consensus         5 gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~-~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~   83 (171)
                      ......++|+++ .|+++++.+.+...... ...++.+++|++.||+ |+||.+.++.++..+..++.......+ ..+ 
T Consensus       226 ~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~-  301 (390)
T TIGR02718       226 SGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSLALLWFAQAAFW-LAP-  301 (390)
T ss_pred             HHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHcc-cCC-
Confidence            345567788875 79999999999887764 5667788999999998 999999988877644433222211000 000 


Q ss_pred             cccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 045901           84 VCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFI  163 (171)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~  163 (171)
                                     ..........+.+++.|...+...+...+..++++      .+++.+.+.....++|..+++.+.
T Consensus       302 ---------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~lg~~~g~~~~  360 (390)
T TIGR02718       302 ---------------GIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGD------QAGTDVTAVQSTRDLGELIASSIA  360 (390)
T ss_pred             ---------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc------chHHHHHHHHHHHHHHHHHHHHHH
Confidence                           11222333334455666677777777777654311      257888888888899999999999


Q ss_pred             HhhccccC
Q 045901          164 VYIQDNLG  171 (171)
Q Consensus       164 ~~i~~~~g  171 (171)
                      +++.|..|
T Consensus       361 G~l~~~~G  368 (390)
T TIGR02718       361 GYLTDRFG  368 (390)
T ss_pred             HHHHHHHc
Confidence            99988654

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.91  E-value=3.1e-08  Score=82.43  Aligned_cols=131  Identities=12%  Similarity=0.070  Sum_probs=90.6

Q ss_pred             HHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 045901            8 PNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQ   87 (171)
Q Consensus         8 ~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~   87 (171)
                      ..+++|+++.+|+++.+++.+.....+...++.++.|++.||+ ||||.+.++..+..++.+++....            
T Consensus       220 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~~~~~~~~------------  286 (382)
T PRK10091        220 SYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLALLMLFFFG------------  286 (382)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHHHHHHHHH------------
Confidence            4467788888999999999999999999999999999999997 999999999988888875553321            


Q ss_pred             cccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 045901           88 MRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQ  167 (171)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~  167 (171)
                               + +.+...+..++.+.|.+...+.......+...   +++   .++..  ......++|..+++.+.+++.
T Consensus       287 ---------~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~---~~~~~--~~~~~~~~g~~~Gp~~~G~l~  348 (382)
T PRK10091        287 ---------G-MKTASLIFAFICCAGLFALSAPLQILLLQNAK---GGE---LLGAA--GGQIAFNLGSAIGAYCGGMML  348 (382)
T ss_pred             ---------h-hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC---cch---HHHHH--HHHHHHHHHHHHHHHHhHHHH
Confidence                     0 12333444445556555544444433333322   111   12332  224567899999999999887


Q ss_pred             cc
Q 045901          168 DN  169 (171)
Q Consensus       168 ~~  169 (171)
                      |+
T Consensus       349 ~~  350 (382)
T PRK10091        349 TL  350 (382)
T ss_pred             Hc
Confidence            74

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.91  E-value=3.9e-08  Score=80.74  Aligned_cols=136  Identities=12%  Similarity=0.183  Sum_probs=96.4

Q ss_pred             ccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 045901            5 GLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPV   84 (171)
Q Consensus         5 gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~   84 (171)
                      +.....+.|+++++|+++.+++.+.....+...++.++.|++.||+ |||+.+..+.++..++.+++......+      
T Consensus       224 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------  296 (385)
T TIGR00710       224 AFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSAVLLEITAILG------  296 (385)
T ss_pred             HHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence            3444567788889999999999999999999999999999999998 999999999888888877665543110      


Q ss_pred             ccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHH-HHHHHHhHHH
Q 045901           85 CDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIA-AGSMLSATFI  163 (171)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~n-iG~~i~~~~~  163 (171)
                                  ......+.....+.++|.+...+.......|..++        ++++..+.+..... +|++.++. .
T Consensus       297 ------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~g~~~~~~~~~~~~~g~i~~~~-~  355 (385)
T TIGR00710       297 ------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH--------VAGTASALFGTLRLVLGAIVGYL-V  355 (385)
T ss_pred             ------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc--------cchHHHHHHHHHHHHHHHHHHHH-H
Confidence                        01233444556678888888888887777665431        14566666555554 45555554 4


Q ss_pred             Hhhcc
Q 045901          164 VYIQD  168 (171)
Q Consensus       164 ~~i~~  168 (171)
                      +.+.+
T Consensus       356 ~~~~~  360 (385)
T TIGR00710       356 SLIHG  360 (385)
T ss_pred             Hhccc
Confidence            44444

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.91  E-value=7.3e-09  Score=87.15  Aligned_cols=141  Identities=13%  Similarity=0.094  Sum_probs=100.9

Q ss_pred             eeccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 045901            3 SNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKP   82 (171)
Q Consensus         3 ~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~   82 (171)
                      |-|....++.|++++++.++.+++.....+.....+..++||+||||+ |++|.+.+......++..++....  +....
T Consensus       234 Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~~~~~~l~~~~--~~~~~  310 (417)
T COG2223         234 FVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMALAAALLSLFL--TGFGH  310 (417)
T ss_pred             HHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHHHHHHHHHccc--ccccc
Confidence            456778899999999999999999999999999999999999999998 888888888888888877665532  11000


Q ss_pred             CcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHH
Q 045901           83 PVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATF  162 (171)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~  162 (171)
                                    +.+...+....+.+.+..|.-+..+..++...++++        .+...++.-...++|.+.=|..
T Consensus       311 --------------~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~--------~G~v~G~vga~G~lGGf~lp~~  368 (417)
T COG2223         311 --------------GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE--------TGAVTGIVGAIGGLGGFFLPLA  368 (417)
T ss_pred             --------------CcchHHHHHHHHHHHHHhccCcchheeechHHHHhh--------hhHHHHHHHHhccccccchhHH
Confidence                          113344444455566666666666677776776431        4566666666666766555555


Q ss_pred             HHhhcc
Q 045901          163 IVYIQD  168 (171)
Q Consensus       163 ~~~i~~  168 (171)
                      .+...+
T Consensus       369 ~g~~~~  374 (417)
T COG2223         369 FGVSLD  374 (417)
T ss_pred             HHHHHH
Confidence            555544

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.91  E-value=3.3e-08  Score=83.66  Aligned_cols=137  Identities=13%  Similarity=-0.017  Sum_probs=85.6

Q ss_pred             eeccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 045901            3 SNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKP   82 (171)
Q Consensus         3 ~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~   82 (171)
                      +|+...++|.|+++++|++..+++...........+..++.|+++||+ ||||.+.++.++..+.........  +.   
T Consensus       259 ~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~--~~---  332 (432)
T PRK10406        259 FYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSAL--QN---  332 (432)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHH--Hc---
Confidence            567778899999989999999999888887778888888999999997 999988877665443332221111  00   


Q ss_pred             CcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHH-HHHHHhH
Q 045901           83 PVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAA-GSMLSAT  161 (171)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~ni-G~~i~~~  161 (171)
                                    ..+.........+.....+...+...++.+|.++++.       |++.+++.|...++ ....++.
T Consensus       333 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~-------r~t~~g~~~~~g~~~~g~~~p~  391 (432)
T PRK10406        333 --------------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV-------RALGVGLSYAVANALFGGSAEY  391 (432)
T ss_pred             --------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc-------cchhhhHHHHHHHHHHHhHHHH
Confidence                          0011111111112222333334456677889997532       67888877655453 2233555


Q ss_pred             HHHhh
Q 045901          162 FIVYI  166 (171)
Q Consensus       162 ~~~~i  166 (171)
                      +.+++
T Consensus       392 ~~~~l  396 (432)
T PRK10406        392 VALSL  396 (432)
T ss_pred             HHHHH
Confidence            55554

>TIGR00788 fbt folate/biopterin transporter

Probab=98.89  E-value=1.5e-08  Score=87.24  Aligned_cols=135  Identities=11%  Similarity=0.099  Sum_probs=101.9

Q ss_pred             HHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccC-----chhHHHHHHHHHH-HHHHHHHHhhhcCCC
Q 045901            7 MPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMG-----RYPMIGFGCIISL-LGMVLLWFTAIFPQE   80 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~G-----r~~~i~~~~~l~~-lg~~ll~~~~~~~~~   80 (171)
                      ...+..++++++|+|+++.+...+.......+-++ .|+++||+ +     ||+.++++.++.. +..  ..++.     
T Consensus        45 ~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l~~~~~~--~~l~~-----  115 (468)
T TIGR00788        45 RLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLLGSAILY--GLLPG-----  115 (468)
T ss_pred             hhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHHHHHHHH--Hhccc-----
Confidence            44567888889999999999999999999998775 99999998 8     7888888876653 222  11111     


Q ss_pred             CCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 045901           81 KPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSA  160 (171)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~  160 (171)
                      .               ++......+.+.+.+++.+.......++..|..+ ++++    ..+....+.|...++|.++++
T Consensus       116 ~---------------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~----~~~~~~s~~~~~~~~G~~vg~  175 (468)
T TIGR00788       116 K---------------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS----AGPSLVSWMWGASATGGLISS  175 (468)
T ss_pred             c---------------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC----cCCCeeeHHHHHHHHHHHHHH
Confidence            0               1122233346778999999999999999999998 3332    245677788888999999999


Q ss_pred             HHHHhhcccc
Q 045901          161 TFIVYIQDNL  170 (171)
Q Consensus       161 ~~~~~i~~~~  170 (171)
                      .+++++.++.
T Consensus       176 ~l~G~l~~~~  185 (468)
T TIGR00788       176 LLGGPLLDKT  185 (468)
T ss_pred             HHHHHHHHhc
Confidence            9999888754

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10133 L-fucose transporter; Provisional

Probab=98.89  E-value=1.4e-08  Score=86.53  Aligned_cols=132  Identities=14%  Similarity=0.084  Sum_probs=96.3

Q ss_pred             ccHHHHHHHh-hHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 045901            5 GLMPNMILYL-CREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPP   83 (171)
Q Consensus         5 gv~~~l~~yl-~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~   83 (171)
                      +...+++.|+ ++.+|+++.+++.....+.++..++.+++|++.||+ ||||++..+.++..++.++..+..        
T Consensus       276 ~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~~~~~~--------  346 (438)
T PRK10133        276 ACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLISAFAG--------  346 (438)
T ss_pred             HHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHcC--------
Confidence            3455778886 567899999999999999999999999999999998 999999999887776655443321        


Q ss_pred             cccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 045901           84 VCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFI  163 (171)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~  163 (171)
                                     .. .-..+..+.++|.+.+.|+..+...|.++++..      ..+....  . ..+|..+++.+.
T Consensus       347 ---------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~~------~as~l~~--~-~~~g~~~~~~i~  401 (438)
T PRK10133        347 ---------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTK------YGSSFIV--M-TIIGGGIVTPVM  401 (438)
T ss_pred             ---------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhhc------cchhHHh--H-HhccchHHHHHH
Confidence                           11 124556789999999999999999998764321      1222221  2 224666667778


Q ss_pred             Hhhcccc
Q 045901          164 VYIQDNL  170 (171)
Q Consensus       164 ~~i~~~~  170 (171)
                      +++.|..
T Consensus       402 G~l~~~~  408 (438)
T PRK10133        402 GFVSDAA  408 (438)
T ss_pred             HHHHHhc
Confidence            8877654

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.89  E-value=2e-08  Score=86.78  Aligned_cols=109  Identities=13%  Similarity=0.144  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCccchhHHHHH
Q 045901           25 ATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLY  104 (171)
Q Consensus        25 a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (171)
                      -+.+++++.++.+++.+++|+++||+ |||+.++++.++..++.+++.++...                    ....++.
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~--------------------~~~e~li  120 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSA--------------------PSFEMLI  120 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHh--------------------hhHHHHH
Confidence            35678889999999999999999998 99999999999999999888777532                    2567899


Q ss_pred             HHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhH
Q 045901          105 SAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSAT  161 (171)
Q Consensus       105 ~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~  161 (171)
                      +||++.|+..|......+-++.|.-|++       .|+..-.....+.++|.+++..
T Consensus       121 ~GR~i~Gl~~gl~~~~~pmyl~E~sP~~-------~RG~~g~~~~~~~~~g~ll~~~  170 (485)
T KOG0569|consen  121 LGRLIVGLACGLSTGLVPMYLTEISPKN-------LRGALGTLLQIGVVIGILLGQV  170 (485)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHhhcChhh-------hccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999976532       3677777777888888888854

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.88  E-value=6.4e-08  Score=81.19  Aligned_cols=135  Identities=13%  Similarity=0.054  Sum_probs=93.1

Q ss_pred             ccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 045901            5 GLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPV   84 (171)
Q Consensus         5 gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~   84 (171)
                      +...++++++.+++|+++.+++.+......+..++.++.|++.||. +|+ .+..+.++..+...++....         
T Consensus       234 ~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~-~l~~~~~~~~~~~~~l~~~~---------  302 (394)
T PRK10213        234 AFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKL-ALAGAPLVLAVSALVLTLWG---------  302 (394)
T ss_pred             HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chh-HHHHHHHHHHHHHHHHHHHh---------
Confidence            3344454444567899999999999999999999999999999995 544 44444444333333332221         


Q ss_pred             ccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045901           85 CDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIV  164 (171)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~  164 (171)
                                   .+.+.+.+...+.|++.+...+..+..+.+..+++        .++..+..+...++|..+|+.+.+
T Consensus       303 -------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~lg~~~G~~l~G  361 (394)
T PRK10213        303 -------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ--------AEKAGSIQVAVIQLANTCGAAIGG  361 (394)
T ss_pred             -------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         12445566677889999999998888888776421        233444555677899999999999


Q ss_pred             hhccccC
Q 045901          165 YIQDNLG  171 (171)
Q Consensus       165 ~i~~~~g  171 (171)
                      ++.|..|
T Consensus       362 ~l~~~~g  368 (394)
T PRK10213        362 YALDNIG  368 (394)
T ss_pred             HHHhccC
Confidence            9988654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.85  E-value=1.6e-08  Score=85.33  Aligned_cols=139  Identities=17%  Similarity=0.155  Sum_probs=92.6

Q ss_pred             eccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhcc-CchhHHHHHHHHHH-HHHHHHHHhhhcCCCC
Q 045901            4 NGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCM-GRYPMIGFGCIISL-LGMVLLWFTAIFPQEK   81 (171)
Q Consensus         4 ~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~-Gr~~~i~~~~~l~~-lg~~ll~~~~~~~~~~   81 (171)
                      ||+..+.|+|+.+..|+|..+++...+.|-.+...+++++||+|||++ |||....+...+.. +..+....++      
T Consensus       269 ~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~------  342 (448)
T COG2271         269 YGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAP------  342 (448)
T ss_pred             HHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCC------
Confidence            678899999999999999999999999999999999999999999998 77776654444333 3333222221      


Q ss_pred             CCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHH-HHHHHh
Q 045901           82 PPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAA-GSMLSA  160 (171)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~ni-G~~i~~  160 (171)
                                     +++..+..+.++.+|+-.-+-.-.+-....|..+++       ..+++-+..-+.-.+ |+..+.
T Consensus       343 ---------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~-------AaGtA~Gf~Glf~Yl~Ga~~a~  400 (448)
T COG2271         343 ---------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKK-------AAGTATGFVGLFAYLIGAALAG  400 (448)
T ss_pred             ---------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHh-------hccchhchhhhHHHHhhHHhcC
Confidence                           123455555555555555444333333334543321       245666655455555 788887


Q ss_pred             HHHHhhcccc
Q 045901          161 TFIVYIQDNL  170 (171)
Q Consensus       161 ~~~~~i~~~~  170 (171)
                      ...+++.|..
T Consensus       401 ~~~g~i~d~~  410 (448)
T COG2271         401 LPLGYIADTW  410 (448)
T ss_pred             CcceeeEecC
Confidence            7777776653

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.85  E-value=1e-07  Score=81.09  Aligned_cols=126  Identities=12%  Similarity=0.040  Sum_probs=90.3

Q ss_pred             hhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCC
Q 045901           14 LCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCE   93 (171)
Q Consensus        14 l~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~   93 (171)
                      +.++.|++...+........+...++.+++|+++||+ |||+.+..+.++..++.+++..... +.              
T Consensus       297 i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~-~~--------------  360 (479)
T PRK10077        297 IFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFY-TQ--------------  360 (479)
T ss_pred             HHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHh-cC--------------
Confidence            3357889888777777777888899999999999998 9999999999999998877754321 00              


Q ss_pred             CccchhHHHHHHHHHHHHHhccc-cccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901           94 SATASQLMLLYSAFGLMSLGGGS-IRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI  166 (171)
Q Consensus        94 ~~~~~~~~~~~~~l~l~g~g~G~-~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i  166 (171)
                         . ........+++.+.+.+. ..|....++.|.++++       +|+++.++.+...++|..+++.+.+.+
T Consensus       361 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-------~r~~~~g~~~~~~~~g~~~~~~~~p~~  423 (479)
T PRK10077        361 ---A-PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNA-------IRGKALAIAVAAQWIANYFVSWTFPMM  423 (479)
T ss_pred             ---c-ccHHHHHHHHHHHHHHhccccchhHHHhHhhCChh-------HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence               0 112233344445555543 3477788889987532       378899998888888888876555543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.85  E-value=3.7e-08  Score=92.13  Aligned_cols=131  Identities=13%  Similarity=0.081  Sum_probs=104.2

Q ss_pred             ccHHHHHHHhhHhhCCChH-HHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 045901            5 GLMPNMILYLCREYNMETT-AATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPP   83 (171)
Q Consensus         5 gv~~~l~~yl~~~lg~s~~-~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~   83 (171)
                      .....++.|+.+.+|+++. +++.+.....++..++.++.|+++||+ ++++.+.++.++..++.+++.+..        
T Consensus       250 ~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~--------  320 (1146)
T PRK08633        250 LAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALSLFLLPTAP--------  320 (1146)
T ss_pred             HHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHHHHHHHHhh--------
Confidence            3455678899999999999 999999999999999999999999998 999999988888887776665432        


Q ss_pred             cccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 045901           84 VCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFI  163 (171)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~  163 (171)
                                     +.+.+++..++.+++.+...+...+++.+..+++       .|++++++..+..++|.++++.+.
T Consensus       321 ---------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~-------~rg~~~~~~~~~~~lg~~~~~~~~  378 (1146)
T PRK08633        321 ---------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEK-------ELGKVLAANNFLQNVGMLLFLALT  378 (1146)
T ss_pred             ---------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCcc-------chhhhhHHHHHHHHHHHHHHHHHH
Confidence                           3455667778889999998888888888876542       267888888888888877666555


Q ss_pred             Hhh
Q 045901          164 VYI  166 (171)
Q Consensus       164 ~~i  166 (171)
                      +.+
T Consensus       379 ~~l  381 (1146)
T PRK08633        379 TLF  381 (1146)
T ss_pred             HHH
Confidence            443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.82  E-value=1.4e-07  Score=79.48  Aligned_cols=138  Identities=19%  Similarity=0.120  Sum_probs=102.5

Q ss_pred             ceeccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 045901            2 ASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEK   81 (171)
Q Consensus         2 ~~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~   81 (171)
                      +.|.....+-+|+++.-|+|....+.+...|.++..++.+++|+++||  +.|+++.....+..+..+.+.+..      
T Consensus       226 g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~~~l~l~~~~------  297 (394)
T COG2814         226 GHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLALALLALTFTG------  297 (394)
T ss_pred             chhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHHHHHHHHHhc------
Confidence            457788889999999999999999999999999999999999999999  788899998888888877766543      


Q ss_pred             CCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhH
Q 045901           82 PPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSAT  161 (171)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~  161 (171)
                                      .+.+...+...+.++..+   |..+.+..+.-+ ..|+    .++....++...+|+|...|..
T Consensus       298 ----------------~~~~~~~~~~~~wg~a~~---~~~~~~~~~~a~-~~p~----~~~~a~sl~~aa~nlgia~GA~  353 (394)
T COG2814         298 ----------------ASPALALALLFLWGFAFS---PALQGLQTRLAR-LAPD----AADLAGSLNVAAFNLGIALGAA  353 (394)
T ss_pred             ----------------chHHHHHHHHHHHHHHhh---hhhhHHHHHhcc-cCCC----chHHHHHHHHHHHHHHHHHHHH
Confidence                            123344444444444443   333333344333 2232    2466777777889999999998


Q ss_pred             HHHhhccccC
Q 045901          162 FIVYIQDNLG  171 (171)
Q Consensus       162 ~~~~i~~~~g  171 (171)
                      +++.+.|+.|
T Consensus       354 lGG~v~~~~g  363 (394)
T COG2814         354 LGGLVLDALG  363 (394)
T ss_pred             HHHHHHHhhc
Confidence            8888888754

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.81  E-value=5.2e-08  Score=81.93  Aligned_cols=131  Identities=15%  Similarity=0.070  Sum_probs=94.6

Q ss_pred             HHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 045901            8 PNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQ   87 (171)
Q Consensus         8 ~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~   87 (171)
                      ..+|.|+++..+ ++.+.+.+...............+++.||..+.++.+..+.++..++.+++...+            
T Consensus       229 ~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~------------  295 (400)
T PRK11646        229 LMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS------------  295 (400)
T ss_pred             HhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh------------
Confidence            356788876555 6788888877766655544444555555543777778888888888876665432            


Q ss_pred             cccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 045901           88 MRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQ  167 (171)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~  167 (171)
                                 +.+.+.+...+.++|.+...|...+...|..+++       ++++.++++....++|..+++.+.+++.
T Consensus       296 -----------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~-------~~g~~~g~~~~~~~~g~~ig~~l~G~l~  357 (400)
T PRK11646        296 -----------NLQQLFTLICLFYIGSIIAEPARETLSASLADAR-------ARGSYMGFSRLGLALGGAIGYIGGGWLF  357 (400)
T ss_pred             -----------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcc-------cchhhhhHHHHHHHHHHHhcccchHHHH
Confidence                       2344455556788888888899888888877542       2688888888899999999999999987


Q ss_pred             cc
Q 045901          168 DN  169 (171)
Q Consensus       168 ~~  169 (171)
                      |+
T Consensus       358 ~~  359 (400)
T PRK11646        358 DL  359 (400)
T ss_pred             HH
Confidence            75

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.80  E-value=3.5e-08  Score=83.65  Aligned_cols=141  Identities=12%  Similarity=0.044  Sum_probs=86.3

Q ss_pred             eccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHH-HHHhhhcCCCCC
Q 045901            4 NGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVL-LWFTAIFPQEKP   82 (171)
Q Consensus         4 ~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~l-l~~~~~~~~~~~   82 (171)
                      +++...+|.|+++..|+++.+++.....+.....++.+++|+++||+ +|+|....+..+..+..+. ..+.. .+.   
T Consensus       268 ~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---  342 (438)
T TIGR00712       268 YGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLVTIAVIVYWM-NPA---  342 (438)
T ss_pred             HHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHHHHHHHHHHh-cCC---
Confidence            56677889999988999999999999999999999999999999997 7554333343322222111 11110 010   


Q ss_pred             CcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHH-HHHHhH
Q 045901           83 PVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAG-SMLSAT  161 (171)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG-~~i~~~  161 (171)
                                     .+.+.....+++.+.+..+..........|.++++       .|+++.++++...++| .++++.
T Consensus       343 ---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~g~~~g~~~~~~~~gg~~~gp~  400 (438)
T TIGR00712       343 ---------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKK-------AAGTAAGFTGLFGYLGGSVAASA  400 (438)
T ss_pred             ---------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChh-------heeeehhhhchHHHhhhhhhcch
Confidence                           01222233333344332222122223445665432       3677888887777876 568898


Q ss_pred             HHHhhccccC
Q 045901          162 FIVYIQDNLG  171 (171)
Q Consensus       162 ~~~~i~~~~g  171 (171)
                      +.+++.|+.|
T Consensus       401 l~G~l~~~~g  410 (438)
T TIGR00712       401 IVGYTVDFFG  410 (438)
T ss_pred             hHHHHHHhcc
Confidence            8888877543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.79  E-value=3.8e-08  Score=80.52  Aligned_cols=124  Identities=11%  Similarity=0.116  Sum_probs=90.7

Q ss_pred             eccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 045901            4 NGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPP   83 (171)
Q Consensus         4 ~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~   83 (171)
                      +++...++.|+++++|+++.+++.+.........++.+++|+++||+ ||||.+..+..+...+..++.....     + 
T Consensus       242 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~~-----~-  314 (366)
T TIGR00886       242 LGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGAFLVVLGLV-----S-  314 (366)
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHHHHHHhcCC-----C-
Confidence            45667789999999999999999999999999999999999999998 9999888888777776665544320     0 


Q ss_pred             cccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 045901           84 VCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAG  155 (171)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG  155 (171)
                                   ..+...+.+.+.+..++.|...+...+..+|..++        .+++.+++.....++|
T Consensus       315 -------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--------~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       315 -------------PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR--------ATGAVSGLVGAIGNLG  365 (366)
T ss_pred             -------------cchHHHHHHHHHHHHHHhccccchhhhcchhhchh--------hcccHHHHHHHhccCC
Confidence                         00234445555666667777777777777787642        2577777666655554

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.78  E-value=4.8e-08  Score=83.89  Aligned_cols=131  Identities=19%  Similarity=0.141  Sum_probs=95.3

Q ss_pred             ChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCccchhH
Q 045901           21 ETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQL  100 (171)
Q Consensus        21 s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (171)
                      ++...+.+.....+...++.++.++++||+ ||||++.++.++..++.+.+......+                  +.+.
T Consensus       264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~  324 (473)
T PRK10429        264 DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVLSCGVLLLMGLAA------------------PHNA  324 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHHHHHhccC------------------chhH
Confidence            455566666666678888889999999998 999999999988777766554322111                  1134


Q ss_pred             HHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhcccc
Q 045901          101 MLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNL  170 (171)
Q Consensus       101 ~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~~  170 (171)
                      +.+.+...+.+++.+...+...++++|..+.++-+..+++.+.++++..+...+|..+++.+.+++.+..
T Consensus       325 ~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~  394 (473)
T PRK10429        325 LLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLI  394 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            5566666788899999999999999998775432111123456788888888999999999888886644

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.78  E-value=1.5e-10  Score=97.77  Aligned_cols=114  Identities=17%  Similarity=0.225  Sum_probs=94.9

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCccchhHH
Q 045901           22 TTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLM  101 (171)
Q Consensus        22 ~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (171)
                      +.+.+.+.+...++..++.+++|+++||+ |||+++.++.++..+|.++..+++..                    .+.+
T Consensus        45 ~~~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~--------------------~~~~  103 (451)
T PF00083_consen   45 SLLSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY--------------------NNFW  103 (451)
T ss_pred             HHHHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc--------------------cccc
Confidence            34578899999999999999999999998 99999999999999999888766410                    1467


Q ss_pred             HHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 045901          102 LLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFI  163 (171)
Q Consensus       102 ~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~  163 (171)
                      .+.++|++.|+|.|+..+..+.++.|..+++       +|++...+......+|.+++..+.
T Consensus       104 ~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~-------~R~~~~~~~~~~~~~G~~~~~~~~  158 (451)
T PF00083_consen  104 MLLIGRFLIGFGIGGAYVVSPIYISEIAPPK-------HRGFLSSLFQLFWALGILLASLIG  158 (451)
T ss_pred             ccccccccccccccccccccccccccccccc-------cccccccccccccccccccccccc
Confidence            7889999999999999999999999987543       367777777777888888776543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.76  E-value=1.8e-07  Score=80.63  Aligned_cols=145  Identities=12%  Similarity=0.147  Sum_probs=92.3

Q ss_pred             eccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 045901            4 NGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPP   83 (171)
Q Consensus         4 ~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~   83 (171)
                      -+....+|.|+++++  +...+........+...+..+++||++||+ ||||.+.++.+...+........  +|..   
T Consensus       269 vg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~~~~~~l~--lp~~---  340 (462)
T PRK15034        269 IGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIFSALLFLT--LPGT---  340 (462)
T ss_pred             HHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHHHHHHHHH--hccc---
Confidence            344557888888755  333333334445677888889999999998 99999999998777776543332  2210   


Q ss_pred             cccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCC----------CCcc----hhhHHHHHHHHHH
Q 045901           84 VCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKG----------NGAK----NAGALQSYFSWYY  149 (171)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~----------~~~~----~~~~~~~~~~~~y  149 (171)
                                  ...+.+.+.+..+.+.+..|.-+..+..++.+.++++          +++|    .+++.+...++..
T Consensus       341 ------------~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~  408 (462)
T PRK15034        341 ------------GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFIS  408 (462)
T ss_pred             ------------cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHH
Confidence                        0124566667666667777778888888888877641          1111    0123556667666


Q ss_pred             HHHHHHHHHHhHHHHhhcc
Q 045901          150 VSIAAGSMLSATFIVYIQD  168 (171)
Q Consensus       150 ~~~niG~~i~~~~~~~i~~  168 (171)
                      ..-.+|.++-|.+.++..+
T Consensus       409 a~G~~Ggf~~p~~~g~~~~  427 (462)
T PRK15034        409 AIGAVGGFFIPQAFGMSLN  427 (462)
T ss_pred             HHHHcccchhhHHHHHHHH
Confidence            6666666666655555544

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.74  E-value=1e-07  Score=79.47  Aligned_cols=132  Identities=8%  Similarity=0.066  Sum_probs=90.3

Q ss_pred             HHHHHhhHhh---CCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 045901            9 NMILYLCREY---NMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVC   85 (171)
Q Consensus         9 ~l~~yl~~~l---g~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~   85 (171)
                      .++.|+++.+   +.+....+.+.+...+...++.+..|++.||+ ||||.+.++.++..++..+...+.          
T Consensus       237 ~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~l~~~~~~~~~----------  305 (396)
T TIGR00882       237 QFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMSVRIIGSSFAT----------  305 (396)
T ss_pred             HHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHhcC----------
Confidence            4677877665   55667778888888888888889999999998 999999999998888776544332          


Q ss_pred             cccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHH-HHHHHHHHHHHHhHHHH
Q 045901           86 DQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSW-YYVSIAAGSMLSATFIV  164 (171)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~-~y~~~niG~~i~~~~~~  164 (171)
                                   +.+.++...++.+++.+........+..+..+++       .+...+.. +.....+|..+++.+.+
T Consensus       306 -------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-------~~at~~~~~~~~~~~lg~~~~~~l~G  365 (396)
T TIGR00882       306 -------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVR-------LSATIYLIGFQFAKQLAMIFLSTLAG  365 (396)
T ss_pred             -------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-------eEEEeehHHHHHHHHHHHHHHHHhHH
Confidence                         2344455566667665444333333344433321       12333333 44678899999999999


Q ss_pred             hhccccC
Q 045901          165 YIQDNLG  171 (171)
Q Consensus       165 ~i~~~~g  171 (171)
                      ++.|..|
T Consensus       366 ~l~~~~G  372 (396)
T TIGR00882       366 NMYDSIG  372 (396)
T ss_pred             HHHHhcc
Confidence            9988654

>PRK09848 glucuronide transporter; Provisional

Probab=98.73  E-value=1.3e-07  Score=80.36  Aligned_cols=137  Identities=12%  Similarity=0.136  Sum_probs=90.0

Q ss_pred             cHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhc---cCchhHH-HHHHHHHHHHHHHHHHhhhcCCCC
Q 045901            6 LMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSC---MGRYPMI-GFGCIISLLGMVLLWFTAIFPQEK   81 (171)
Q Consensus         6 v~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~---~Gr~~~i-~~~~~l~~lg~~ll~~~~~~~~~~   81 (171)
                      +..+++.|+++.+|+++.++|.+..+..+...+..++.|+++||.   +||||.. .++.+...+...++ +.  .|...
T Consensus        27 ~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~-~~--~~~~~  103 (448)
T PRK09848         27 GALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLV-FW--VPTDW  103 (448)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHH-Hh--CcCCC
Confidence            456788999999999999999999999999999999999999994   3667644 56666555444433 21  11100


Q ss_pred             CCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHH-----HHHHHH
Q 045901           82 PPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYV-----SIAAGS  156 (171)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~-----~~niG~  156 (171)
                                   +........+....+.+++.+...++..++..+..++  ++|    |.+...+-.+     ..+++.
T Consensus       104 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~--~~~----r~~~~~~r~~~~~~~~~~~~~  164 (448)
T PRK09848        104 -------------SHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQ--PQS----RARLGAARGIAASLTFVCLAF  164 (448)
T ss_pred             -------------CcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCC--HHH----HHHHHHHHHHHHHHHHHHHHH
Confidence                         0011233445555678888899999888887776653  333    4444444333     234455


Q ss_pred             HHHhHHHH
Q 045901          157 MLSATFIV  164 (171)
Q Consensus       157 ~i~~~~~~  164 (171)
                      .+++.+.+
T Consensus       165 ~~~p~i~~  172 (448)
T PRK09848        165 LIGPSIKN  172 (448)
T ss_pred             HHHHHHHH
Confidence            55555444

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.73  E-value=2.2e-07  Score=80.35  Aligned_cols=132  Identities=13%  Similarity=0.128  Sum_probs=98.3

Q ss_pred             HHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhc----cCchhH-HHHHHHHHHHHHHHHHHhhhcCCCC
Q 045901            7 MPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSC----MGRYPM-IGFGCIISLLGMVLLWFTAIFPQEK   81 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~----~Gr~~~-i~~~~~l~~lg~~ll~~~~~~~~~~   81 (171)
                      ...++.+++ +.|.|..+.+.....  ....+..++.|+++||+    +||||. +.++.+...++...+.+..  |   
T Consensus        32 ~~~l~~~l~-~~g~~~~~ig~~~~~--~~~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~--~---  103 (491)
T PRK11010         32 SGTLQAWMT-VENIDLKTIGFFSLV--GQAYVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLE--P---  103 (491)
T ss_pred             HHHHHHHHH-hCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcC--C---
Confidence            345666765 459999999886332  22346889999999995    288885 6677777777766665542  1   


Q ss_pred             CCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhH
Q 045901           82 PPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSAT  161 (171)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~  161 (171)
                                     ..+.+.+.+.+.+.+++.+...+...++..|.++++       +|+++.++...+.++|.++++.
T Consensus       104 ---------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~-------~rg~~~~i~~~g~~lG~llg~~  161 (491)
T PRK11010        104 ---------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE-------ERGAGAAISVLGYRLAMLVSGG  161 (491)
T ss_pred             ---------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh-------hhHHHHHHHHHHHHHHHHHHHH
Confidence                           124666777788889999999999999999998632       2688888888899999999988


Q ss_pred             HHHhhcc
Q 045901          162 FIVYIQD  168 (171)
Q Consensus       162 ~~~~i~~  168 (171)
                      +..++.+
T Consensus       162 l~~~l~~  168 (491)
T PRK11010        162 LALWLAD  168 (491)
T ss_pred             HHHHHHh
Confidence            8887766

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.73  E-value=3.5e-07  Score=76.71  Aligned_cols=129  Identities=9%  Similarity=-0.009  Sum_probs=95.1

Q ss_pred             HHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 045901            7 MPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCD   86 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~   86 (171)
                      ...++.|+++.+|+++.+++.+.....++..++.++.+++.||+ ++|+.+..+..+ .+..+++....           
T Consensus       225 ~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~-~~~~~~~~~~~-----------  291 (393)
T PRK11195        225 RFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILM-GLVVLLMALQH-----------  291 (393)
T ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHH-HHHHHHHHHHh-----------
Confidence            34556788889999999999999999999999999999999997 999988887543 33322222211           


Q ss_pred             ccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901           87 QMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI  166 (171)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i  166 (171)
                                  +.+...+..++.|++.|...++..+.+.+. +   |+|  ..+++.....+...+++..++..+.+.+
T Consensus       292 ------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~-~---~~~--~~~g~~~a~~~~~~~~~~~~~~~~~~~~  353 (393)
T PRK11195        292 ------------SLLPAYPLLILIGALGGFFVVPMNALLQHR-G---HVL--VGAGHSIAVQNFNENLAMLLMLGLYSLL  353 (393)
T ss_pred             ------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhh-C---ccc--ccchhHHHHHhHHHHHHHHHHHHHHHHH
Confidence                        344455666788999998888888777553 2   211  1257788888889999988888777655

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.72  E-value=4e-08  Score=83.83  Aligned_cols=125  Identities=17%  Similarity=0.127  Sum_probs=92.7

Q ss_pred             CChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCccchh
Q 045901           20 METTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQ   99 (171)
Q Consensus        20 ~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (171)
                      +++.-.+.++.+..++..++.++.||++||+ |||+.+...+++..++++++.++..    ++            +....
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~~----~~------------~~~~~  143 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSVG----TT------------SPLGV  143 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCCC----CC------------CCcch
Confidence            7788899999999999999999999999998 9999999999999999985544321    11            11123


Q ss_pred             HHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHH----HHHHHHHHHHHHhHHHHhhcc
Q 045901          100 LMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSW----YYVSIAAGSMLSATFIVYIQD  168 (171)
Q Consensus       100 ~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~----~y~~~niG~~i~~~~~~~i~~  168 (171)
                      ...+..-|.++|+|.|+-.|...+..+|.-.++       +|+....+    .-+..-.|++++.++..-+++
T Consensus       144 m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~-------~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~  209 (538)
T KOG0252|consen  144 MMTLCFFRFLLGIGIGGDYPLSATIMSESANKK-------TRGAFIAAVFAMQGFGILAGGIVALIVSAIFEK  209 (538)
T ss_pred             hhHHHHHHHHhhccccCCCcchHHHhhhhhhhc-------cccceeEEEEEecchhHhhccHHHHHHHHHHhc
Confidence            456778899999999999999999888875432       34544443    344555666666655554443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.71  E-value=7.4e-08  Score=90.51  Aligned_cols=152  Identities=11%  Similarity=0.020  Sum_probs=106.9

Q ss_pred             eccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 045901            4 NGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPP   83 (171)
Q Consensus         4 ~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~   83 (171)
                      +++...+|.|+++.+|.++.+++.+.+.+.++..++.++.|+++|+. ++++.+..+.++..++.+.+.+.. .....+.
T Consensus       242 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~  319 (1140)
T PRK06814        242 AVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLFGLDLAFAS-SSVPAEP  319 (1140)
T ss_pred             HHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHHHHHHHhcc-ccccccc
Confidence            34566789999999999999999999999999999999999999997 777777777666665554443320 0000000


Q ss_pred             cccccccCCC-CccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHH
Q 045901           84 VCDQMRSGCE-SATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATF  162 (171)
Q Consensus        84 ~~~~~~~~~~-~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~  162 (171)
                      .   ...... .....+.+.++++.+++|++.|...+...+++.+..+++.       +++.++.+....++|..+++.+
T Consensus       320 ~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~-------~G~v~g~~~~~~~~~~~ig~~~  389 (1140)
T PRK06814        320 A---QLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH-------RARVIAANNVLNAAFMVAGTII  389 (1140)
T ss_pred             c---cccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc-------ceeeeHHHHHHHHHHHHHHHHH
Confidence            0   000000 0000134566777888999999999999999888876532       6788888888888888888887


Q ss_pred             HHhhc
Q 045901          163 IVYIQ  167 (171)
Q Consensus       163 ~~~i~  167 (171)
                      .+.+.
T Consensus       390 ~g~l~  394 (1140)
T PRK06814        390 LALLQ  394 (1140)
T ss_pred             HHHHH
Confidence            77775

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.70  E-value=2.1e-07  Score=80.37  Aligned_cols=139  Identities=20%  Similarity=0.124  Sum_probs=88.0

Q ss_pred             ceeccHHHHHHHhhHhhCCChHHHHH------------HHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHH
Q 045901            2 ASNGLMPNMILYLCREYNMETTAATN------------VLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMV   69 (171)
Q Consensus         2 ~~~gv~~~l~~yl~~~lg~s~~~a~~------------~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~   69 (171)
                      .+|++..++|.+++ +.|+++.+++.            ..........++.+++++++||+ |||+++.++.++..++..
T Consensus       303 ~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~~~~~~~~~  380 (502)
T TIGR00887       303 AFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGFFILTVLFF  380 (502)
T ss_pred             HHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHHHHHHHHH
Confidence            35666666777775 67887653321            12223345556778899999998 999999999888887766


Q ss_pred             HHHHhhhcCCCCCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHH
Q 045901           70 LLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYY  149 (171)
Q Consensus        70 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y  149 (171)
                      ++..... +.                 + ....+............+..+....+.+|.++.+       .|++..++.+
T Consensus       381 ~l~~~~~-~~-----------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~-------~R~~~~g~~~  434 (502)
T TIGR00887       381 VLGFAYN-HL-----------------S-THGFLAIYVLAQFFANFGPNATTFIVPGEVFPTR-------YRSTAHGISA  434 (502)
T ss_pred             HHHHHHH-hc-----------------c-hhHHHHHHHHHHHHHhcCCCchhhhhhhccCchh-------HHHHHHHHHH
Confidence            6654320 00                 0 1111111111122222233455566678888642       4789999999


Q ss_pred             HHHHHHHHHHhHHHHhhcc
Q 045901          150 VSIAAGSMLSATFIVYIQD  168 (171)
Q Consensus       150 ~~~niG~~i~~~~~~~i~~  168 (171)
                      ...++|+++++.+.+++.+
T Consensus       435 ~~~~~~~~~~~~~~~~l~~  453 (502)
T TIGR00887       435 ASGKAGAIIGQFGFLYLAQ  453 (502)
T ss_pred             HHhhhHHHHHHHHhhhhhc
Confidence            9999999999999998876

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.69  E-value=2.2e-07  Score=81.36  Aligned_cols=135  Identities=13%  Similarity=0.092  Sum_probs=109.9

Q ss_pred             cHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 045901            6 LMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVC   85 (171)
Q Consensus         6 v~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~   85 (171)
                      +...+|.+.++.+|.++..-|.+.+++.++..++.++.+++.+|. ++++.+..+.++..++.+.+.++.          
T Consensus       237 ~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~lal~~----------  305 (524)
T PF05977_consen  237 VWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLLALSP----------  305 (524)
T ss_pred             HHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHHhcch----------
Confidence            455678888899999999999999999999999999999999997 999999999998888777666543          


Q ss_pred             cccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 045901           86 DQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVY  165 (171)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~  165 (171)
                                   +.+..++.+++.|.+.....+..+..+-+..+    +   ..+++.+..+....+.+..+|..+.|+
T Consensus       306 -------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P----~---~~~GRv~si~~~~~~g~~~lGsll~G~  365 (524)
T PF05977_consen  306 -------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVP----D---WVRGRVFSIYQMVFFGGMPLGSLLWGF  365 (524)
T ss_pred             -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----H---HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         45666777788888888877777766545443    2   248999999888888888888888888


Q ss_pred             hccccC
Q 045901          166 IQDNLG  171 (171)
Q Consensus       166 i~~~~g  171 (171)
                      +.+..|
T Consensus       366 la~~~g  371 (524)
T PF05977_consen  366 LADHFG  371 (524)
T ss_pred             HHHHhC
Confidence            877654

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.67  E-value=1.3e-07  Score=81.36  Aligned_cols=127  Identities=12%  Similarity=0.075  Sum_probs=78.3

Q ss_pred             ccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchh-------HHHHHHHHHHHHHHHHHHhhhc
Q 045901            5 GLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYP-------MIGFGCIISLLGMVLLWFTAIF   77 (171)
Q Consensus         5 gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~-------~i~~~~~l~~lg~~ll~~~~~~   77 (171)
                      ++...++.|+.+++|+++.+++.+...+.+.+.++.+++||++||+ |||+       ...+..++..+..  +.+..  
T Consensus       270 ~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~~l~~i~~--~~~~~--  344 (476)
T PLN00028        270 TMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQTLGGVFC--IWLGR--  344 (476)
T ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHHHHHHHHH--HHhcc--
Confidence            3455678999888999999999999999999999999999999997 8762       2222222222111  11111  


Q ss_pred             CCCCCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 045901           78 PQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSM  157 (171)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~  157 (171)
                                         ..+.....+..++.+++.+...+...+...+..    ++    .++..+++.....++|+.
T Consensus       345 -------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~----~~g~~~g~~~~~g~lg~~  397 (476)
T PLN00028        345 -------------------ANSLGAAIVVMILFSIFVQAACGATFGIVPFVS----RR----SLGVISGLTGAGGNVGAV  397 (476)
T ss_pred             -------------------cchHHHHHHHHHHHHHHHHHhhhhhcccCcccC----hh----hchhhhhhhhccccHHHH
Confidence                               012233344445555555444444444444432    21    267777777666677776


Q ss_pred             HHhHHH
Q 045901          158 LSATFI  163 (171)
Q Consensus       158 i~~~~~  163 (171)
                      +++.+.
T Consensus       398 i~~~l~  403 (476)
T PLN00028        398 LTQLLF  403 (476)
T ss_pred             HHHHHH
Confidence            666543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.66  E-value=7.7e-07  Score=74.53  Aligned_cols=132  Identities=16%  Similarity=0.183  Sum_probs=82.3

Q ss_pred             HHHHHhhHhhCCChHHHHHHHHHHH-HHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 045901            9 NMILYLCREYNMETTAATNVLFIWT-AATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQ   87 (171)
Q Consensus         9 ~l~~yl~~~lg~s~~~a~~~~~~~~-~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~   87 (171)
                      ..+.|+.+++|+++.+.+.+..... ....++.+++|++.||+ ||||.+.++.++..+..+.+......+         
T Consensus       231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~~---------  300 (402)
T PRK11902        231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVTP---------  300 (402)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhcC---------
Confidence            4456777789999999999886654 45788899999999998 999998888877766654443322111         


Q ss_pred             cccCCCCccchhHHHHHHHHH----HHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 045901           88 MRSGCESATASQLMLLYSAFG----LMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFI  163 (171)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~----l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~  163 (171)
                                .+.+.+.+...    ..+++.+...+....++.+.++.           +.++++....++|..++..+.
T Consensus       301 ----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~  359 (402)
T PRK11902        301 ----------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSA-----------TQYALLSALASVGRVYVGPTS  359 (402)
T ss_pred             ----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence                      02233443333    34445555555555555544321           122343344567776566678


Q ss_pred             HhhccccC
Q 045901          164 VYIQDNLG  171 (171)
Q Consensus       164 ~~i~~~~g  171 (171)
                      +++.|.+|
T Consensus       360 G~l~~~~G  367 (402)
T PRK11902        360 GYLVEAYG  367 (402)
T ss_pred             HHHHHHhC
Confidence            88877654

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.66  E-value=3.6e-07  Score=76.00  Aligned_cols=139  Identities=17%  Similarity=0.141  Sum_probs=108.1

Q ss_pred             ceeccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 045901            2 ASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEK   81 (171)
Q Consensus         2 ~~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~   81 (171)
                      .||.+..++|.++. +.|+|..+++.+++.....+....+.+-++++|...+|+..+....++.+|..-+.+...     
T Consensus       223 ~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~-----  296 (395)
T COG2807         223 LYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPG-----  296 (395)
T ss_pred             HHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh-----
Confidence            47889999999997 669999999999999999999999999999998889999999999999999988876531     


Q ss_pred             CCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhH
Q 045901           82 PPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSAT  161 (171)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~  161 (171)
                                       +.+..-  .+++|+|.|+..|....++.+..++  +++    -.+..++-.-.-.+=+.+||.
T Consensus       297 -----------------~~~~lw--~~llG~G~G~~F~laL~li~~rs~~--a~~----Aa~LSgmaQg~GYllAa~GP~  351 (395)
T COG2807         297 -----------------QLPILW--ALLLGLGQGGAFPLALTLILLRSSD--AAI----AAALSGMAQGVGYLLAAFGPW  351 (395)
T ss_pred             -----------------hHHHHH--HHHHhCccchHHHHHHHHHHhhcCC--hHH----HHHHHHHhhhhhHHHHhhhhh
Confidence                             222121  4789999999999999999998754  332    233333322333344566788


Q ss_pred             HHHhhccccC
Q 045901          162 FIVYIQDNLG  171 (171)
Q Consensus       162 ~~~~i~~~~g  171 (171)
                      +.+++.|..|
T Consensus       352 l~G~lhDa~g  361 (395)
T COG2807         352 LFGFLHDATG  361 (395)
T ss_pred             hHhHHHHhcC
Confidence            8998887543

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.65  E-value=3.3e-07  Score=77.50  Aligned_cols=132  Identities=18%  Similarity=0.253  Sum_probs=108.8

Q ss_pred             cHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 045901            6 LMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVC   85 (171)
Q Consensus         6 v~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~   85 (171)
                      +......|-.+++|++..+..+.-......+.++++++|+|.||+ |.|+++.++.++..+..+...+..          
T Consensus       271 il~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~~~~~~~~~----------  339 (438)
T COG2270         271 ILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIAALYLIFLE----------  339 (438)
T ss_pred             HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHHHHHHHHcc----------
Confidence            445566788889999999999999999999999999999999997 999999999999998877665432          


Q ss_pred             cccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 045901           86 DQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVY  165 (171)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~  165 (171)
                                   ...-+.+.-.++|+..|..++..-.+.++..|+++       -+++|+.|...-...+.+||.+.+.
T Consensus       340 -------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k-------~~~fFglyaltgra~S~~gp~lv~v  399 (438)
T COG2270         340 -------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK-------EGRFFGLYALTGRAASFLGPFLVAV  399 (438)
T ss_pred             -------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc-------ccceeehhhhhhhHHHHHHHHHHHH
Confidence                         11123333468899999999999999999987654       3779999999999999999988776


Q ss_pred             hcc
Q 045901          166 IQD  168 (171)
Q Consensus       166 i~~  168 (171)
                      +-+
T Consensus       400 ~t~  402 (438)
T COG2270         400 ITQ  402 (438)
T ss_pred             HHH
Confidence            654

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.63  E-value=8.6e-07  Score=72.96  Aligned_cols=62  Identities=11%  Similarity=0.087  Sum_probs=52.6

Q ss_pred             HHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHH
Q 045901            9 NMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLL   71 (171)
Q Consensus         9 ~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll   71 (171)
                      ..+.++.+++|+++.+++.+.....+...++.+++|+++||+ ||||.+.++.++..+..+.+
T Consensus       216 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~  277 (377)
T PRK11102        216 AGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMGIWL  277 (377)
T ss_pred             cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHH
Confidence            345677778999999999999999999999999999999998 99999999888765544433

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.63  E-value=5.9e-07  Score=74.62  Aligned_cols=93  Identities=14%  Similarity=0.107  Sum_probs=80.1

Q ss_pred             HhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCc
Q 045901           16 REYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESA   95 (171)
Q Consensus        16 ~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~   95 (171)
                      +++|+++.|.+.+..+-...+.+...+.|.++||+ ||||.-++.++++.+..+... .+                    
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~-~~--------------------  119 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKH-SS--------------------  119 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHh-cc--------------------
Confidence            57899999999999999999999999999999998 999999999999998886332 11                    


Q ss_pred             cchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCC
Q 045901           96 TASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGN  133 (171)
Q Consensus        96 ~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~  133 (171)
                         ++..+++||++-|+++-....+-.+......++.+
T Consensus       120 ---~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g  154 (354)
T PF05631_consen  120 ---NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRG  154 (354)
T ss_pred             ---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence               47889999999999999999999988877665443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.62  E-value=9.5e-07  Score=73.44  Aligned_cols=64  Identities=8%  Similarity=0.034  Sum_probs=56.7

Q ss_pred             HHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHh
Q 045901           10 MILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFT   74 (171)
Q Consensus        10 l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~   74 (171)
                      .+.|+++++|+++.+.+.+.........++.++.|++.||+ ||||.+.++.++..++.+++.+.
T Consensus       226 ~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~  289 (392)
T PRK10473        226 SPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS  289 (392)
T ss_pred             CHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677788999999999999999999999999999999998 99999999999888888776654

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.61  E-value=1.8e-07  Score=76.14  Aligned_cols=126  Identities=16%  Similarity=0.200  Sum_probs=99.3

Q ss_pred             HHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHH-HHHHHHHHHHhhhcCCCCCCcccccc
Q 045901           11 ILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCII-SLLGMVLLWFTAIFPQEKPPVCDQMR   89 (171)
Q Consensus        11 ~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l-~~lg~~ll~~~~~~~~~~~~~~~~~~   89 (171)
                      +.|+++++|+|+..++.+.+.....+.+.+++.|.++|++ ||+-..+.+..+ ..++...+.++.              
T Consensus       288 ~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a~~~tl~~H~~l~Ft~--------------  352 (459)
T KOG4686|consen  288 PMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASACILTLLGHSGLFFTF--------------  352 (459)
T ss_pred             HHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHHHHHHHHHhhhHHhhh--------------
Confidence            5788999999999999999999999999999999999998 999877765544 444555554442              


Q ss_pred             cCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 045901           90 SGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDN  169 (171)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~  169 (171)
                                 +.-+++..++|+.........-|.++-..+++       +.+++|+..+..-|+|-.+.+++.+++.|.
T Consensus       353 -----------lsPy~~m~~lGLsysllAcslWP~va~~vpE~-------qLGTaygf~qsIqNLgla~i~Iiag~i~d~  414 (459)
T KOG4686|consen  353 -----------LSPYTSMTFLGLSYSLLACSLWPCVASLVPEE-------QLGTAYGFIQSIQNLGLAFIPIIAGFIADG  414 (459)
T ss_pred             -----------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHH-------HhcchHHHHHHHHhhhhhHHhhhhheeecC
Confidence                       22356667777776666555677777776542       389999999999999999999999998874

>PRK11462 putative transporter; Provisional

Probab=98.60  E-value=1.1e-06  Score=75.59  Aligned_cols=134  Identities=18%  Similarity=0.243  Sum_probs=100.1

Q ss_pred             HHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhh---ccCchhHHH-HHHHHHHHHHHHHHHhhhcCCCCC
Q 045901            7 MPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADS---CMGRYPMIG-FGCIISLLGMVLLWFTAIFPQEKP   82 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr---~~Gr~~~i~-~~~~l~~lg~~ll~~~~~~~~~~~   82 (171)
                      ..++..|+++.+|+++..++.+..+.-+.-.+.-++.|+++||   .+||||-.+ ++.+...++..++..   .|...+
T Consensus        29 ~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~---~p~~s~  105 (460)
T PRK11462         29 MLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYS---TPDLSM  105 (460)
T ss_pred             HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHh---CCCCCc
Confidence            4478899999999999999999999999999999999999997   248875554 676777777655432   222111


Q ss_pred             CcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHH
Q 045901           83 PVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATF  162 (171)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~  162 (171)
                                    ......+.+...+..++.-....+..++.+|..++  ++    +|.+...|.....++|.++++.+
T Consensus       106 --------------~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d--~~----eRt~l~s~r~~~~~iG~~~~~~~  165 (460)
T PRK11462        106 --------------NGKMIYAAITYTLLTLLYTVVNIPYCALGGVITND--PT----QRISLQSWRFVLATAGGMLSTVL  165 (460)
T ss_pred             --------------chHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCC--HH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence                          12233445555677888889999999999998764  33    37888888888888887776554


Q ss_pred             H
Q 045901          163 I  163 (171)
Q Consensus       163 ~  163 (171)
                      .
T Consensus       166 ~  166 (460)
T PRK11462        166 M  166 (460)
T ss_pred             H
Confidence            4

>PRK10054 putative transporter; Provisional

Probab=98.60  E-value=2.8e-07  Score=77.37  Aligned_cols=132  Identities=15%  Similarity=0.137  Sum_probs=95.6

Q ss_pred             HHHHHhhH--hhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 045901            9 NMILYLCR--EYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCD   86 (171)
Q Consensus         9 ~l~~yl~~--~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~   86 (171)
                      .++.|+..  +.+.+....+.+............+..|++.||+ +||+.+..+.++..++...+.++.           
T Consensus       228 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-----------  295 (395)
T PRK10054        228 CISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFVIGLVGFIFSG-----------  295 (395)
T ss_pred             hHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHcc-----------
Confidence            45566543  3456666777777777777667777889999998 999999999988888876665431           


Q ss_pred             ccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901           87 QMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI  166 (171)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i  166 (171)
                                 ++.+.+.+...+.++|.+...|...+.+.+..+++       +++++++.. ...++|..+++.+++++
T Consensus       296 -----------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~-------~~~~~~~~~-~~~~~G~~~Gp~~~G~l  356 (395)
T PRK10054        296 -----------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPG-------MKASYFSAQ-SLGWLGAAINPLVSGVI  356 (395)
T ss_pred             -----------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcc-------cceehHhHH-HHHHHHHHHHHHHHHHH
Confidence                       13445566677899998888888888888876532       245566643 35558999999999999


Q ss_pred             ccccC
Q 045901          167 QDNLG  171 (171)
Q Consensus       167 ~~~~g  171 (171)
                      .|..|
T Consensus       357 ~~~~g  361 (395)
T PRK10054        357 LTTLP  361 (395)
T ss_pred             HHHcC
Confidence            88654

>PRK11043 putative transporter; Provisional

Probab=98.58  E-value=1.9e-06  Score=71.79  Aligned_cols=136  Identities=10%  Similarity=0.080  Sum_probs=92.4

Q ss_pred             ccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 045901            5 GLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPV   84 (171)
Q Consensus         5 gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~   84 (171)
                      .....+|.|++ +.|+++.+++...........++.++++++.||+ ||||.+....++..++.+.+......+      
T Consensus       221 ~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------  292 (401)
T PRK11043        221 AWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLLS------  292 (401)
T ss_pred             HHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence            33445667775 5799999999888888888889999999999998 999987777666665554443322110      


Q ss_pred             ccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045901           85 CDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIV  164 (171)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~  164 (171)
                                  ..+.....+...+.+++.+...|.......|..++        .+++..+++......++..++.+.+
T Consensus       293 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~~~g~~~~~~~~~~~~~~~~~g  352 (401)
T PRK11043        293 ------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ--------ATGKAAALQNTLQLGLCFLASLLVS  352 (401)
T ss_pred             ------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc--------cChHHHHHHHHHHHHHHHHHHHHHH
Confidence                        01234455566678888888888887766665432        1466777766666666666666666


Q ss_pred             hhcc
Q 045901          165 YIQD  168 (171)
Q Consensus       165 ~i~~  168 (171)
                      .+.+
T Consensus       353 ~l~~  356 (401)
T PRK11043        353 ALIS  356 (401)
T ss_pred             HccC
Confidence            6544

>PRK11462 putative transporter; Provisional

Probab=98.58  E-value=1e-06  Score=75.72  Aligned_cols=135  Identities=10%  Similarity=0.109  Sum_probs=84.0

Q ss_pred             HHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccC
Q 045901           12 LYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSG   91 (171)
Q Consensus        12 ~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~   91 (171)
                      .|.+..+|. +...+.+...+.+...++.+++++++||+ |||+.+..+..+..+..+++.+.   |.            
T Consensus       253 y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~~~~~~---~~------------  315 (460)
T PRK11462        253 YYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISLAMFFV---PM------------  315 (460)
T ss_pred             hhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHh---ch------------
Confidence            333333443 34445667777888889999999999998 99988776555444433333221   10            


Q ss_pred             CCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 045901           92 CESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDN  169 (171)
Q Consensus        92 ~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~  169 (171)
                            ++...+++..++.+++.+...+...++.+|..+.++-+..+++-+..++.+.+..++|..++..+.+++.+.
T Consensus       316 ------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~  387 (460)
T PRK11462        316 ------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY  387 (460)
T ss_pred             ------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  122233444556777777777777888899876543211112224446666678888888888877776543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.52  E-value=6.6e-07  Score=78.07  Aligned_cols=130  Identities=16%  Similarity=0.199  Sum_probs=104.4

Q ss_pred             HHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccc
Q 045901           10 MILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMR   89 (171)
Q Consensus        10 l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~   89 (171)
                      +-..+.++++.+..+++++.+.......+..++.+.+.||+ |.|++++.|.++..+|.++..++.              
T Consensus        68 ~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~g~~lssF~~--------------  132 (509)
T KOG2504|consen   68 LFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAALGLLLSSFAT--------------  132 (509)
T ss_pred             hHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHHHHHHHHHHh--------------
Confidence            44566678999999999999999999999999999999998 999999999999999999888875              


Q ss_pred             cCCCCccchhHHHHHHHH-HHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 045901           90 SGCESATASQLMLLYSAF-GLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQD  168 (171)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l-~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~  168 (171)
                               +.+.+++.. ++.|+|.|+...+....+...|+        |||+.+.++-..+.-+|.++=+.+..++.+
T Consensus       133 ---------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~--------kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~  195 (509)
T KOG2504|consen  133 ---------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE--------KKRALATGIAVSGTGVGTVVFPPLLKYLLS  195 (509)
T ss_pred             ---------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhH--------HHHHHHHhhhhccCCcceeeHHHHHHHHHH
Confidence                     355555544 57999999999999988888774        346777776556666666665666666655


Q ss_pred             ccC
Q 045901          169 NLG  171 (171)
Q Consensus       169 ~~g  171 (171)
                      ++|
T Consensus       196 ~~G  198 (509)
T KOG2504|consen  196 KYG  198 (509)
T ss_pred             HhC
Confidence            543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.51  E-value=3.5e-07  Score=77.34  Aligned_cols=138  Identities=16%  Similarity=0.232  Sum_probs=100.4

Q ss_pred             HHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhh----hccCchhH-HHHHHHHHHHHHHHHHHhhhcCCCC
Q 045901            7 MPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLAD----SCMGRYPM-IGFGCIISLLGMVLLWFTAIFPQEK   81 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laD----r~~Gr~~~-i~~~~~l~~lg~~ll~~~~~~~~~~   81 (171)
                      ..+++.|+++.+|+++..++.+..+..+...+.-++.|+++|    |+ ||||- ++++.++..++.+++....  |...
T Consensus        21 ~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~llf~~~--p~~~   97 (428)
T PF13347_consen   21 SSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFLLFSPP--PAGL   97 (428)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHHhhccc--cchh
Confidence            347789999999999999999999999999999999999999    77 76555 5578888888877664331  2000


Q ss_pred             CCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhH
Q 045901           82 PPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSAT  161 (171)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~  161 (171)
                                   +...+...+.+..++..++......+..+++.|..++++  |    |.+...+-....++|.++...
T Consensus        98 -------------~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~--~----R~~l~~~~~~~~~~g~~l~~~  158 (428)
T PF13347_consen   98 -------------SFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD--E----RTRLSSWRMIFSMIGSLLASF  158 (428)
T ss_pred             -------------hhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh--h----hhhHHHHHHHHHHHHHHHHHH
Confidence                         001123334666677899999999999999999876533  2    567777766677777765554


Q ss_pred             HHHhh
Q 045901          162 FIVYI  166 (171)
Q Consensus       162 ~~~~i  166 (171)
                      +.+.+
T Consensus       159 ~~~~l  163 (428)
T PF13347_consen  159 LAPIL  163 (428)
T ss_pred             Hhhhh
Confidence            44443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.50  E-value=2.8e-06  Score=72.41  Aligned_cols=137  Identities=12%  Similarity=-0.027  Sum_probs=85.0

Q ss_pred             eeccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHH--------HHHHHHHHHHHHHHHHh
Q 045901            3 SNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMI--------GFGCIISLLGMVLLWFT   74 (171)
Q Consensus         3 ~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i--------~~~~~l~~lg~~ll~~~   74 (171)
                      ++....++|.|+++.+|++..+++.......+...++.+++|+++||+ ++||..        ..+......+..++...
T Consensus       277 ~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (465)
T TIGR00894       277 YTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKIFNGIGGLGPGIFAYALP  355 (465)
T ss_pred             HHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667889999999999999999999999999999999999999997 544321        11111111111111111


Q ss_pred             hhcCCCCCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHH
Q 045901           75 AIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAA  154 (171)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~ni  154 (171)
                      . ..                   .+.....+.+.+.+.+.++..+.......|..    |    +.++...++.....++
T Consensus       356 ~-~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~----~~~g~~~g~~~~~~~l  407 (465)
T TIGR00894       356 Y-LS-------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLA----P----RFLGFIKGITGLPGFI  407 (465)
T ss_pred             H-cC-------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcC----h----hHHHHHHHHHHHHHHH
Confidence            1 00                   01222333334444444444443333333322    2    2478888888889999


Q ss_pred             HHHHHhHHHHhhcc
Q 045901          155 GSMLSATFIVYIQD  168 (171)
Q Consensus       155 G~~i~~~~~~~i~~  168 (171)
                      |.++++.+.+++.+
T Consensus       408 ~~~i~p~l~g~~~~  421 (465)
T TIGR00894       408 GGLIASTLAGNILS  421 (465)
T ss_pred             HHHHHHHhhheeeC
Confidence            99999999988765

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.49  E-value=1.3e-06  Score=73.88  Aligned_cols=131  Identities=14%  Similarity=0.013  Sum_probs=94.3

Q ss_pred             ccHHHHHHHhhHh-hCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 045901            5 GLMPNMILYLCRE-YNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPP   83 (171)
Q Consensus         5 gv~~~l~~yl~~~-lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~   83 (171)
                      ++..+++.|+++. .+.+...++.....+.....++.+++|++.||. ++||.+.++.++..+..++.....        
T Consensus       250 ~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~~ll~~~~~--------  320 (410)
T TIGR00885       250 MCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMALCLGSIFAG--------  320 (410)
T ss_pred             HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHcC--------
Confidence            4567788888653 255666667677777788899999999999997 999999888888887766665432        


Q ss_pred             cccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 045901           84 VCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFI  163 (171)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~  163 (171)
                                     +. .....+.+.++..+.+.|...+...+.++++..      ....  ..-++. +|..+.|.+.
T Consensus       321 ---------------~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~------~~s~--~l~~~~-~Gga~~p~l~  375 (410)
T TIGR00885       321 ---------------GH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTK------YGAA--GLVMAI-IGGGIVPPLQ  375 (410)
T ss_pred             ---------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh------hhHH--HHHHHH-hccchHHHHH
Confidence                           11 124556677788888889999999998864321      1111  222233 8888889999


Q ss_pred             Hhhccc
Q 045901          164 VYIQDN  169 (171)
Q Consensus       164 ~~i~~~  169 (171)
                      +++.|.
T Consensus       376 G~~~d~  381 (410)
T TIGR00885       376 GFIIDM  381 (410)
T ss_pred             HHHHHH
Confidence            999884

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.48  E-value=1.2e-06  Score=75.34  Aligned_cols=140  Identities=21%  Similarity=0.221  Sum_probs=109.6

Q ss_pred             HHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccc
Q 045901           10 MILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMR   89 (171)
Q Consensus        10 l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~   89 (171)
                      ++.|.+.-+|.++..+............++.++...+.+|+ ||||+..++.++..++.+++.+..              
T Consensus       259 ~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~~~~~~f~~--------------  323 (467)
T COG2211         259 MVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVGYLLLYFTP--------------  323 (467)
T ss_pred             hheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHHHHHHHhhc--------------
Confidence            34455556788888888888888888888899999999997 999999999999999999887764              


Q ss_pred             cCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 045901           90 SGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDN  169 (171)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~  169 (171)
                             .++.++.++..++.++|.+...+...++++|..+-++-+..+++-+-.++..-+..=+|..++..+.+++-..
T Consensus       324 -------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~  396 (467)
T COG2211         324 -------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGA  396 (467)
T ss_pred             -------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   1256777888899999999999999999999876544322223345666666666778888888777777654


Q ss_pred             cC
Q 045901          170 LG  171 (171)
Q Consensus       170 ~g  171 (171)
                      .|
T Consensus       397 ~G  398 (467)
T COG2211         397 IG  398 (467)
T ss_pred             cC
Confidence            43

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.47  E-value=6.8e-07  Score=58.70  Aligned_cols=57  Identities=26%  Similarity=0.364  Sum_probs=50.1

Q ss_pred             cHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHH
Q 045901            6 LMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIIS   64 (171)
Q Consensus         6 v~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~   64 (171)
                      +.++++.|++ +.|+++.+.+.+..+......+++++.|+++||+ +|+|.++....+.
T Consensus        19 ~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~~   75 (77)
T PF12832_consen   19 LYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLFM   75 (77)
T ss_pred             HHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHHH
Confidence            5567788887 5899999999999999999999999999999998 8888887766543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.45  E-value=1.9e-06  Score=76.38  Aligned_cols=97  Identities=13%  Similarity=0.192  Sum_probs=79.2

Q ss_pred             HHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccc
Q 045901            9 NMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQM   88 (171)
Q Consensus         9 ~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~   88 (171)
                      ....+...++|-+ ....++...+.+.+.+..++.|.|+|.+ |||..++++.++..+|.++++.++             
T Consensus        65 ~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~-------------  129 (599)
T PF06609_consen   65 SILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQ-------------  129 (599)
T ss_pred             HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCC-------------
Confidence            3446777788876 5566788889999999999999999998 999999999999999999887654             


Q ss_pred             ccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCC
Q 045901           89 RSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDK  131 (171)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~  131 (171)
                                +...+++|..+.|+|.|... .....++|..+.
T Consensus       130 ----------~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~  161 (599)
T PF06609_consen  130 ----------NMNTFIAGMVLYGVGAGVQE-LAALAISELVPN  161 (599)
T ss_pred             ----------cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhccc
Confidence                      45568899999999977765 445568898864

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.41  E-value=2.9e-06  Score=70.89  Aligned_cols=130  Identities=15%  Similarity=-0.007  Sum_probs=80.2

Q ss_pred             ceeccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCch---hHHH-HHHHHHHHHHHHHHHhhhc
Q 045901            2 ASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRY---PMIG-FGCIISLLGMVLLWFTAIF   77 (171)
Q Consensus         2 ~~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~---~~i~-~~~~l~~lg~~ll~~~~~~   77 (171)
                      .+|++..++|.|++ +.|++.. ++...........   +..++++||. .||   +... ...++..+....+....  
T Consensus       207 ~~~~~~~wlp~~L~-~~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~-~r~~~r~~~~~~~~~~~a~~~~~~~~~~--  278 (368)
T TIGR00903       207 LFDNLAIWLEAALR-PAGLEDI-AGDAVALAILAGL---IGVAVIPDRV-ARAGLRSIYIRAAALLIAAFFLALAFEL--  278 (368)
T ss_pred             HHHHHHHHHHHHHH-HCCCChH-HHHHHHHHHHHHH---HHHHHhhHHh-hhhhhHHHHHHHHHHHHHHHHHHHHHcc--
Confidence            46778889999996 4688865 4544444444333   4468899986 554   3322 23333333322222111  


Q ss_pred             CCCCCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 045901           78 PQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSM  157 (171)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~  157 (171)
                                           +.....+...+.++......+...++.+|.++++       .|++..++.+...++|+.
T Consensus       279 ---------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~-------~rgt~~G~~~~~g~~~~~  330 (368)
T TIGR00903       279 ---------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKE-------LHGKAAGAIGFTSRAISV  330 (368)
T ss_pred             ---------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchh-------hcCcccchhhHHHHHHHH
Confidence                                 1122233344555666666677778889998653       378999999999999998


Q ss_pred             HHhHHHHhhc
Q 045901          158 LSATFIVYIQ  167 (171)
Q Consensus       158 i~~~~~~~i~  167 (171)
                      +++.+.+.+.
T Consensus       331 ~~~~~~~~~~  340 (368)
T TIGR00903       331 ALALAAMLFI  340 (368)
T ss_pred             HHHHHHHHHh
Confidence            8888777654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.35  E-value=2.4e-06  Score=74.56  Aligned_cols=131  Identities=17%  Similarity=0.143  Sum_probs=100.2

Q ss_pred             HHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHH--HHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 045901            8 PNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIG--FGCIISLLGMVLLWFTAIFPQEKPPVC   85 (171)
Q Consensus         8 ~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~--~~~~l~~lg~~ll~~~~~~~~~~~~~~   85 (171)
                      ..++.|.. ..++++.+++.++++..+...++.++.|+++|+. ..++..+  ++.++..++...+.+..          
T Consensus       319 ~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~gl~~~~~p~~~----------  386 (509)
T KOG2504|consen  319 VYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIAGLARLFLPFAT----------  386 (509)
T ss_pred             HHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHHHHHHHHHHHhc----------
Confidence            34556665 7899999999999999999999999999999997 6444444  44444444443333322          


Q ss_pred             cccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 045901           86 DQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVY  165 (171)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~  165 (171)
                                   +++.+..--+++|+..|.+....+..+.|..+.+       +...++++......++.++++-+.++
T Consensus       387 -------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~-------~l~~a~Gl~l~~~gi~~l~gpPiag~  446 (509)
T KOG2504|consen  387 -------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLE-------KLSNAYGLLLLFQGIGALVGPPIAGL  446 (509)
T ss_pred             -------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh-------hcchHHHHHHHHhHHHHHcCccccee
Confidence                         3555666667888888888888888888988653       37889999999999999999999998


Q ss_pred             hcccc
Q 045901          166 IQDNL  170 (171)
Q Consensus       166 i~~~~  170 (171)
                      +.|..
T Consensus       447 ~~d~t  451 (509)
T KOG2504|consen  447 LYDIT  451 (509)
T ss_pred             eeecc
Confidence            88754

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.35  E-value=5.8e-06  Score=71.97  Aligned_cols=122  Identities=10%  Similarity=-0.016  Sum_probs=99.4

Q ss_pred             HhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCc
Q 045901           16 REYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESA   95 (171)
Q Consensus        16 ~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~   95 (171)
                      +++++...+-+.+.++|.++..++.+++|+|.||+ .-.+.+....++..+-.++....                     
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~---------------------  131 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV---------------------  131 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            46788888999999999999999999999999998 86666666666555443333222                     


Q ss_pred             cchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 045901           96 TASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQD  168 (171)
Q Consensus        96 ~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~  168 (171)
                        ++.+.+++-+++.|+-++...|+...+++..|++++       |+.-+++++....+|.++|..+...+++
T Consensus       132 --~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e-------~g~r~~~~~a~~~~g~i~ggliA~g~~~  195 (495)
T KOG2533|consen  132 --HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE-------RGLRMGIWYASASLGNIFGGLIAYGVFK  195 (495)
T ss_pred             --hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh-------hhhhHHHHHHhcchhhHHHHHHHHHhhh
Confidence              267889999999999999999999999999997543       6788889998999999888887777543

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.34  E-value=1.8e-05  Score=60.80  Aligned_cols=124  Identities=19%  Similarity=0.179  Sum_probs=91.6

Q ss_pred             HhhCCCh--HHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCC
Q 045901           16 REYNMET--TAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCE   93 (171)
Q Consensus        16 ~~lg~s~--~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~   93 (171)
                      .+++.+.  ...+.....+.....+..++.|+++||+ |||+.+..+.....++.+++.+...                 
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~-----------------   91 (338)
T COG0477          30 STLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN-----------------   91 (338)
T ss_pred             HHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc-----------------
Confidence            3455555  5788899999999999999999999998 9999999888876666454544321                 


Q ss_pred             CccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHH-HHHHHHHHHhHHHHhhc
Q 045901           94 SATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYV-SIAAGSMLSATFIVYIQ  167 (171)
Q Consensus        94 ~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~-~~niG~~i~~~~~~~i~  167 (171)
                          .....+.+.+...+++.|...+...+++.|.+++ .     +++....++... ...+|.++++.+.+++.
T Consensus        92 ----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (338)
T COG0477          92 ----VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A-----TERGLAVGLVTLGAGALGLALGPLLAGLLL  156 (338)
T ss_pred             ----chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                1356677777789999999999999999999865 1     125666666666 46677777776555543

>TIGR00898 2A0119 cation transport protein

Probab=98.33  E-value=5e-06  Score=71.44  Aligned_cols=104  Identities=14%  Similarity=0.093  Sum_probs=75.9

Q ss_pred             HHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCccchhHHHHHHHHHHHH
Q 045901           32 WTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMS  111 (171)
Q Consensus        32 ~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g  111 (171)
                      ..+...++.++.+++.||+ |||+.+.++.++..++.+++.+..   .                 . ..+...+..++.+
T Consensus       364 ~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~---~-----------------~-~~~~~~~~~~~~~  421 (505)
T TIGR00898       364 SGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVP---V-----------------D-LYFLRTALAVLGK  421 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcC---C-----------------C-chHHHHHHHHHHH
Confidence            3456677888999999997 999999999998888877665432   1                 0 1122333344555


Q ss_pred             HhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045901          112 LGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIV  164 (171)
Q Consensus       112 ~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~  164 (171)
                      .+.+...+....+.+|.++++       .|++..++......+|.++++.+.+
T Consensus       422 ~~~~~~~~~~~~~~~e~~p~~-------~r~~~~g~~~~~~~ig~~i~p~i~~  467 (505)
T TIGR00898       422 FGITSAFQMVYLYTAELYPTV-------VRNLGVGVCSTMARVGSIISPFLVY  467 (505)
T ss_pred             HHHHHHHHHHHHHhcccccHH-------HHhhhHhHHHHHHHHHHHHHhHHHH
Confidence            666666677788888988542       3788889988889999999998776

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.31  E-value=2.4e-05  Score=65.06  Aligned_cols=131  Identities=12%  Similarity=0.082  Sum_probs=89.8

Q ss_pred             HHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccc
Q 045901           10 MILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMR   89 (171)
Q Consensus        10 l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~   89 (171)
                      .+.|+++.+|+++.+.+.+......+..++.++.+++.||+ +|+.  ..+.....++.+.+.......           
T Consensus       230 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~-----------  295 (394)
T PRK11652        230 SGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLM--WQSVICCLLAGLLMWIPGWFG-----------  295 (394)
T ss_pred             ChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHHHHHHHHhc-----------
Confidence            45677777999999999988888888888888899999997 6333  333333333333222211000           


Q ss_pred             cCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 045901           90 SGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDN  169 (171)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~  169 (171)
                             ..+.+.+..+..+.++|.|...|.......|..++        .++.....+....++|..+++.+.+++.++
T Consensus       296 -------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        296 -------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY--------LAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             -------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--------cchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence                   01234566667788899998889999888776642        146667777778899999999888877654

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.30  E-value=1.4e-05  Score=66.66  Aligned_cols=128  Identities=16%  Similarity=0.128  Sum_probs=108.6

Q ss_pred             HHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccc
Q 045901           10 MILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMR   89 (171)
Q Consensus        10 l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~   89 (171)
                      +..-.++++|+|.+.++.+.+.=.....+..+++.+++.|+ |..+.+..++++..+|..+=...               
T Consensus        34 LL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR~~~---------------   97 (395)
T COG2807          34 LLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIRSLG---------------   97 (395)
T ss_pred             hHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHhcc---------------
Confidence            44556789999999999999999999999999999999997 99999999999999997643221               


Q ss_pred             cCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 045901           90 SGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDN  169 (171)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~  169 (171)
                               +...++.+-.+.|.|.+..+...|..+.+-|++        +.+...+.|..+.++|+.++..+...+.++
T Consensus        98 ---------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk--------~~~~mtglYs~sl~~~aaLaa~lavpla~~  160 (395)
T COG2807          98 ---------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK--------RVGLMTGLYSTSLGAGAALAAALAVPLAQH  160 (395)
T ss_pred             ---------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc--------chhhHHhHHHHHHHHHHHHHhhhhhHHHHh
Confidence                     345688888999999999999999999998863        357788899999999999999888877764


Q ss_pred             c
Q 045901          170 L  170 (171)
Q Consensus       170 ~  170 (171)
                      .
T Consensus       161 ~  161 (395)
T COG2807         161 S  161 (395)
T ss_pred             h
Confidence            3

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.27  E-value=1.1e-05  Score=68.43  Aligned_cols=101  Identities=20%  Similarity=0.192  Sum_probs=74.2

Q ss_pred             HHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 045901            7 MPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCD   86 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~   86 (171)
                      .+++++|++ +.|+|..|.|.+.+.......+++++.|+++||+..+||.+.+..++..+...+....+           
T Consensus        22 ~p~~~~~L~-~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~-----------   89 (400)
T PF03825_consen   22 LPYLPLYLE-SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSS-----------   89 (400)
T ss_pred             HHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhc-----------
Confidence            457788887 56899999999999999999999999999999985678888777776665544333321           


Q ss_pred             ccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCC
Q 045901           87 QMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDK  131 (171)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~  131 (171)
                                  +.+.+++...+..+...-..|...+..-+..++
T Consensus        90 ------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~  122 (400)
T PF03825_consen   90 ------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD  122 (400)
T ss_pred             ------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc
Confidence                        344455556667777666667777766666553

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.25  E-value=1.6e-05  Score=66.10  Aligned_cols=139  Identities=11%  Similarity=-0.012  Sum_probs=78.7

Q ss_pred             cHHHHHHHhhHhhCCChHHHHHHH--HHHHHHHhhhhh-hhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 045901            6 LMPNMILYLCREYNMETTAATNVL--FIWTAATNFVPI-LGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKP   82 (171)
Q Consensus         6 v~~~l~~yl~~~lg~s~~~a~~~~--~~~~~~~~i~~~-~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~   82 (171)
                      +.+.+|.|++ +.|.|+.+.+.+.  ........+.++ +.++.+||+ ||||..++...+..... +..++...+.   
T Consensus        20 ~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~~~~-~~~~~~~~~~---   93 (390)
T TIGR02718        20 AMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLVSAC-LASLALVGPD---   93 (390)
T ss_pred             HHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHHHHH-HHHHHcCCcc---
Confidence            3466777886 5699999999973  444555545554 458889997 99999766654322211 1222210110   


Q ss_pred             CcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHH
Q 045901           83 PVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATF  162 (171)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~  162 (171)
                                    ......+.....+.++......+....+..|..++       ++++.+..+..++..+|.+++..+
T Consensus        94 --------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~-------~~~~~~~~~~~~g~~lG~~~g~~~  152 (390)
T TIGR02718        94 --------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNG-------RTLAKGNAVQIAGVMIGFFGGGAG  152 (390)
T ss_pred             --------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------hhhhHHHHHHHHHHHHHHHHHHHH
Confidence                          01122233333344455555555555444443321       234556666677778899998887


Q ss_pred             HHhhccccC
Q 045901          163 IVYIQDNLG  171 (171)
Q Consensus       163 ~~~i~~~~g  171 (171)
                      .+++.++.|
T Consensus       153 ~~~l~~~~g  161 (390)
T TIGR02718       153 TLVLFGKFG  161 (390)
T ss_pred             HHHHHHHhC
Confidence            777766543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.25  E-value=4.6e-05  Score=66.11  Aligned_cols=103  Identities=13%  Similarity=0.141  Sum_probs=73.8

Q ss_pred             HhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCc
Q 045901           16 REYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESA   95 (171)
Q Consensus        16 ~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~   95 (171)
                      .+-|++..++...+......+.++.+++.++-||+ |||++++++..++.+..+++.....+....              
T Consensus       298 ~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~~~~~~~~~~~~l~~~~--------------  362 (485)
T KOG0569|consen  298 KTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMAVALLLMSIALFLSNSF--------------  362 (485)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------
Confidence            36799999999999999999999999999999998 999999999999999998887765321100              


Q ss_pred             cchhHHHHHHHHHHHHHhccc-cccchhhhhhhcCCCCC
Q 045901           96 TASQLMLLYSAFGLMSLGGGS-IRASSLVFGADQLDKGN  133 (171)
Q Consensus        96 ~~~~~~~~~~~l~l~g~g~G~-~~~~~~~~~ad~~~~~~  133 (171)
                      +++.....++++++..+..+. ..|...=+.+|.++...
T Consensus       363 ~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~  401 (485)
T KOG0569|consen  363 GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA  401 (485)
T ss_pred             hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc
Confidence            011112233444444444443 24555566789997643

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.23  E-value=2.4e-05  Score=66.93  Aligned_cols=137  Identities=13%  Similarity=0.155  Sum_probs=103.2

Q ss_pred             HHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhcc----CchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 045901            9 NMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCM----GRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPV   84 (171)
Q Consensus         9 ~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~----Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~   84 (171)
                      ....|+++++|+++.+.............+=+ +.|.++|.+-    -||+-++++.++..++.+.+...+   ..    
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp-~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~---~~----   82 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSIKP-LYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLP---AS----   82 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhCchHHhh-hHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcc---cc----
Confidence            45578999999999999998888877777755 8999999961    366667778887766665554432   11    


Q ss_pred             ccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045901           85 CDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIV  164 (171)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~  164 (171)
                                  ..+.....+.+++..+|.........++..|..+.++.     .++....+.+....+|.+++..+.+
T Consensus        83 ------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~-----~~g~lqS~~~~~~~~G~lv~~~l~G  145 (433)
T PF03092_consen   83 ------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE-----SRGDLQSFVWGVRSVGSLVGSLLSG  145 (433)
T ss_pred             ------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc-----hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence                        11233445566788999999999999999998865432     2677788888999999999998888


Q ss_pred             hhcccc
Q 045901          165 YIQDNL  170 (171)
Q Consensus       165 ~i~~~~  170 (171)
                      ++.++.
T Consensus       146 ~l~~~~  151 (433)
T PF03092_consen  146 PLLDSF  151 (433)
T ss_pred             hhhhcC
Confidence            887654

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.20  E-value=2.6e-06  Score=72.37  Aligned_cols=54  Identities=11%  Similarity=0.096  Sum_probs=44.6

Q ss_pred             HHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHH
Q 045901            7 MPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGC   61 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~   61 (171)
                      .++++++|+++.|+|.++.|.+.++......+..++.|.++||. |.||-++...
T Consensus        27 ~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i   80 (412)
T PF01306_consen   27 LPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFI   80 (412)
T ss_dssp             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHH
T ss_pred             HHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHH
Confidence            56888999999999999999999999999999999999999997 8666655443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.10  E-value=8.6e-05  Score=59.26  Aligned_cols=104  Identities=16%  Similarity=0.193  Sum_probs=80.0

Q ss_pred             HHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccc
Q 045901           10 MILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMR   89 (171)
Q Consensus        10 l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~   89 (171)
                      ....+++++|+|.+|.+.+-..-.++..++ ++.|.+.|++ |++.++.+|.+...+|+.++..+-.-.           
T Consensus        24 yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~~~-----------   90 (250)
T PF06813_consen   24 YSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVSGR-----------   90 (250)
T ss_pred             hhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCc-----------
Confidence            345678899999999999999999999874 7999999998 999999999999999999887754110           


Q ss_pred             cCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCC
Q 045901           90 SGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDK  131 (171)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~  131 (171)
                           ..+.+.+.+++-..+.+.|...+.+.....-.+.||+
T Consensus        91 -----i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~  127 (250)
T PF06813_consen   91 -----IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR  127 (250)
T ss_pred             -----cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc
Confidence                 0012456666666677777766766665555677864

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.09  E-value=1.8e-07  Score=76.13  Aligned_cols=135  Identities=17%  Similarity=0.249  Sum_probs=109.9

Q ss_pred             HHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccc
Q 045901           10 MILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMR   89 (171)
Q Consensus        10 l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~   89 (171)
                      +.++.+.+.+.+.++..++.+++.--+.+.+.++||+-||.+|-|..-++-++...+|-++.+....             
T Consensus        66 lq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi-------------  132 (459)
T KOG4686|consen   66 LQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI-------------  132 (459)
T ss_pred             hhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH-------------
Confidence            4566666788888888999999999999999999999999999988877777888888877765432             


Q ss_pred             cCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 045901           90 SGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDN  169 (171)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~  169 (171)
                             .+..|....||+++|+|.-....+-+.+....|+.+       ..+..++++.-...+|+.+...+.+++++.
T Consensus       133 -------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGK-------ELn~vfGlqlSvAR~GstvNf~lm~~ly~~  198 (459)
T KOG4686|consen  133 -------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGK-------ELNFVFGLQLSVARLGSTVNFLLMPFLYDT  198 (459)
T ss_pred             -------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCc-------cccchhhHHHHHHHhhceeeeeecHHHHHH
Confidence                   347899999999999998777777777776666543       378889998888889999999999999886


Q ss_pred             cC
Q 045901          170 LG  171 (171)
Q Consensus       170 ~g  171 (171)
                      +|
T Consensus       199 ~~  200 (459)
T KOG4686|consen  199 MG  200 (459)
T ss_pred             HH
Confidence            53

>TIGR00788 fbt folate/biopterin transporter

Probab=98.03  E-value=1.6e-05  Score=68.59  Aligned_cols=136  Identities=10%  Similarity=-0.067  Sum_probs=102.7

Q ss_pred             hHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCC
Q 045901           15 CREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCES   94 (171)
Q Consensus        15 ~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~   94 (171)
                      ++.+|+++.+.|.+.....++..++..+.+++.+|+ +.|+++.++.++..++.+........+....          ..
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~----------gi  348 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLAF----------GI  348 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeecccccc----------CC
Confidence            357899999999999999999999999999999997 9999999999999988765432110010000          00


Q ss_pred             ccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhccccC
Q 045901           95 ATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG  171 (171)
Q Consensus        95 ~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~~g  171 (171)
                      +   ..+.......+.+++.|....+...++.+..+++.       .++.++++....|+|..++..+++++.++.|
T Consensus       349 ~---~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~-------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       349 S---DEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC-------ESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             C---CeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc-------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            0   11223344467788888888888999999876543       4889999999999999999999999988765

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.98  E-value=0.0001  Score=63.62  Aligned_cols=140  Identities=16%  Similarity=0.290  Sum_probs=104.8

Q ss_pred             cHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhc---cCchhH-HHHHHHHHHHHHHHHHHhhhcCCCC
Q 045901            6 LMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSC---MGRYPM-IGFGCIISLLGMVLLWFTAIFPQEK   81 (171)
Q Consensus         6 v~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~---~Gr~~~-i~~~~~l~~lg~~ll~~~~~~~~~~   81 (171)
                      +...+..|.|+..|+++..+|.+..+--+.-++.-++.|++.||.   +||||- ++.+.+-..+...++..+.   ...
T Consensus        31 ~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p---~~~  107 (467)
T COG2211          31 VVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITP---DFS  107 (467)
T ss_pred             HHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCC---Ccc
Confidence            455788999999999999999999999999999999999999963   266554 5566677777666554432   110


Q ss_pred             CCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhH
Q 045901           82 PPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSAT  161 (171)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~  161 (171)
                                    ...+..-.++...+.+++.-..+.+-.++.++..++  |+|    |.+..+|-.+..++|.++...
T Consensus       108 --------------~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d--~~E----R~~l~s~R~~~~~~g~~l~~~  167 (467)
T COG2211         108 --------------MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQD--PQE----RASLTSWRMVFASLGGLLVAV  167 (467)
T ss_pred             --------------cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCC--HHH----HHHHHHHHHHHHHHHHHHHHH
Confidence                          012344445666789999999999999999998764  443    788999998999999777766


Q ss_pred             HHHhhcc
Q 045901          162 FIVYIQD  168 (171)
Q Consensus       162 ~~~~i~~  168 (171)
                      +.+.+..
T Consensus       168 ~~~plv~  174 (467)
T COG2211         168 LFPPLVK  174 (467)
T ss_pred             HHHHHHH
Confidence            5555443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.95  E-value=0.00024  Score=60.12  Aligned_cols=101  Identities=21%  Similarity=0.375  Sum_probs=87.0

Q ss_pred             HHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccC
Q 045901           12 LYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSG   91 (171)
Q Consensus        12 ~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~   91 (171)
                      +|=-+.+|++..+...++..+..+..++-.+.|++..|..++|++..+++.+..++..++.++...              
T Consensus       233 Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~--------------  298 (403)
T PF03209_consen  233 PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL--------------  298 (403)
T ss_pred             CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc--------------
Confidence            333456899999999999999999999999999999977799999999999999999988887631              


Q ss_pred             CCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCC
Q 045901           92 CESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKG  132 (171)
Q Consensus        92 ~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~  132 (171)
                            .+.+.+..+.+++|+|.|.+.......+.|.-.++
T Consensus       299 ------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~  333 (403)
T PF03209_consen  299 ------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAG  333 (403)
T ss_pred             ------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCc
Confidence                  14577889999999999999999999999987543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.90  E-value=0.00036  Score=59.26  Aligned_cols=139  Identities=12%  Similarity=0.013  Sum_probs=101.9

Q ss_pred             HHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 045901            7 MPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCD   86 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~   86 (171)
                      ..+...|+++.-|.+....+.+.+.-.+.=.+.-.+.+++-.|+ |.|+++.++.+...+=..+.+.... |        
T Consensus       227 ~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~~l~a~~~~-~--------  296 (400)
T PF03825_consen  227 YTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRWLLYAYFSD-P--------  296 (400)
T ss_pred             HHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHhcC-C--------
Confidence            34667888754448888888777766677777778899999998 9999999999998887776665420 0        


Q ss_pred             ccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHH-HHHHHHhHHHHh
Q 045901           87 QMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIA-AGSMLSATFIVY  165 (171)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~n-iG~~i~~~~~~~  165 (171)
                               ..........+-.+-|+..|.+.+....++.+..|++       .|.+..+++....+ +|..+|..++|+
T Consensus       297 ---------~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~-------~~at~Q~l~~~~~~Glg~~iG~~igG~  360 (400)
T PF03825_consen  297 ---------WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPE-------LRATAQGLYSALSFGLGGAIGSLIGGW  360 (400)
T ss_pred             ---------cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcc-------chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                     0001122233345689999999999999998887643       25777777766544 899999999999


Q ss_pred             hccccC
Q 045901          166 IQDNLG  171 (171)
Q Consensus       166 i~~~~g  171 (171)
                      +.|++|
T Consensus       361 l~~~~g  366 (400)
T PF03825_consen  361 LYDAFG  366 (400)
T ss_pred             HHHHhc
Confidence            999765

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.88  E-value=0.0002  Score=62.24  Aligned_cols=139  Identities=12%  Similarity=0.129  Sum_probs=91.4

Q ss_pred             cHHHHHHHhhHhhCCChH----HHHHHHHHHHHHHhhhhhhhHHHhhhccCchhH-------HHHHHHHHHHHHHHHHHh
Q 045901            6 LMPNMILYLCREYNMETT----AATNVLFIWTAATNFVPILGAFLADSCMGRYPM-------IGFGCIISLLGMVLLWFT   74 (171)
Q Consensus         6 v~~~l~~yl~~~lg~s~~----~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~-------i~~~~~l~~lg~~ll~~~   74 (171)
                      ....++.|.++..+.+..    ..+.+.+...+...+..++.|++.||+ +||+.       +.+|.++..++.+.++..
T Consensus       288 ~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~  366 (489)
T PRK10207        288 MPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLCSLGFLTAAAA  366 (489)
T ss_pred             cccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            335566777643322110    123333334445656677788999998 98874       888989888887655432


Q ss_pred             hh-cCCCCCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHH
Q 045901           75 AI-FPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIA  153 (171)
Q Consensus        75 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~n  153 (171)
                      .. ....+             . ..+.+.+....++.++|.++..|....++.+..|+       +.++.+.+.++...+
T Consensus       367 ~~~~~~~~-------------~-~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~-------~~~g~~~g~~~l~~~  425 (489)
T PRK10207        367 GMWFADAQ-------------G-LTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQ-------HLMGFILGMWFLTQA  425 (489)
T ss_pred             HHhhcCCC-------------C-ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChH-------HHHHHHHHHHHHHHH
Confidence            21 11000             0 11345566778899999999999999988887643       236888889999999


Q ss_pred             HHHHHHhHHHHhh
Q 045901          154 AGSMLSATFIVYI  166 (171)
Q Consensus       154 iG~~i~~~~~~~i  166 (171)
                      +|..++..+..+.
T Consensus       426 ig~~lg~~l~~~~  438 (489)
T PRK10207        426 AAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999988777554

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.85  E-value=0.00045  Score=58.35  Aligned_cols=102  Identities=16%  Similarity=0.054  Sum_probs=68.0

Q ss_pred             ccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 045901            5 GLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPV   84 (171)
Q Consensus         5 gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~   84 (171)
                      +....+|.|+++.+|+++.+.+...........++..+.+.+.+|. .++|.+.....+..+|..++.......      
T Consensus       236 ~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~ig~~l~~~~~~~~------  308 (413)
T PRK15403        236 SWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLVGLALLIVGNLLW------  308 (413)
T ss_pred             HHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHHHHHHHHHHHHc------
Confidence            3344568899988999999999988877778888777777665554 455555555555556655554432100      


Q ss_pred             ccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhh
Q 045901           85 CDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFG  125 (171)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~  125 (171)
                                  ++.++..+++.++.++|.+...|+.....
T Consensus       309 ------------~~~~~~~~~~~~l~~~G~~~~~p~~~~~a  337 (413)
T PRK15403        309 ------------PHVWLWSVLGTSLYAFGIGLIFPTLFRFT  337 (413)
T ss_pred             ------------cccHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence                        01233456778888999999888888533

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.82  E-value=0.0004  Score=58.82  Aligned_cols=141  Identities=18%  Similarity=0.141  Sum_probs=98.7

Q ss_pred             hhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccC------chhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 045901           14 LCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMG------RYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQ   87 (171)
Q Consensus        14 l~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~G------r~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~   87 (171)
                      +..|++.+..-.+.++..-...+.. .+..|+.||++ +      |-+-+..|.++...|..+..++...-...      
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap~-R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~------   77 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAPL-RVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAES------   77 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHH-HHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccc------
Confidence            4468999999999888877777664 77999999998 6      44556788888888877776654211100      


Q ss_pred             cccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 045901           88 MRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQ  167 (171)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~  167 (171)
                      .... +.+..........+..+.|+|.+...++..++.+|..+++       +|.+...+.|...-+|.+++.++.+.+-
T Consensus        78 ~~~~-~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~-------~R~~~v~ivw~Mli~G~iv~ai~~g~lL  149 (403)
T PF03209_consen   78 GQQS-SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEE-------RRPRVVAIVWVMLIVGIIVSAIVFGRLL  149 (403)
T ss_pred             cccc-ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHh-------hhhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            0000 1111112223344556789999999999999999987643       3788888888888899999998888776


Q ss_pred             ccc
Q 045901          168 DNL  170 (171)
Q Consensus       168 ~~~  170 (171)
                      +.+
T Consensus       150 ~~~  152 (403)
T PF03209_consen  150 DPF  152 (403)
T ss_pred             ccc
Confidence            643

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.75  E-value=2.6e-05  Score=65.92  Aligned_cols=139  Identities=14%  Similarity=0.042  Sum_probs=102.5

Q ss_pred             HHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccC--chhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 045901            8 PNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMG--RYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVC   85 (171)
Q Consensus         8 ~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~G--r~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~   85 (171)
                      +.++++..+++..+..+.+.......+...++..+.|.++||+ +  |+.....++++..+......++           
T Consensus       291 Ptlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~~~~~iP~~-----------  358 (464)
T KOG3764|consen  291 PTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGVSSGPIPFA-----------  358 (464)
T ss_pred             cccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHHHhchhHhh-----------
Confidence            4566777788886666888888888899999999999999998 8  6655555655544332222222           


Q ss_pred             cccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 045901           86 DQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVY  165 (171)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~  165 (171)
                                  +++..+.+-.+..+++.+...+...|......+..+.++- +..++.+.++-.+..+|..+||++++.
T Consensus       359 ------------~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~-~vYGsVyaIad~a~sla~a~GP~~gg~  425 (464)
T KOG3764|consen  359 ------------TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGF-NVYGSVYAIADAAFSLAYAIGPTFGGS  425 (464)
T ss_pred             ------------hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhcccc-ceeeeHHHHHHHHHHHhhhccccccch
Confidence                        1445566666778888888888888888888776543211 136788889999999999999999999


Q ss_pred             hccccC
Q 045901          166 IQDNLG  171 (171)
Q Consensus       166 i~~~~g  171 (171)
                      +.+++|
T Consensus       426 iv~~iG  431 (464)
T KOG3764|consen  426 LVEAIG  431 (464)
T ss_pred             heeehh
Confidence            988775

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.69  E-value=0.00034  Score=59.19  Aligned_cols=132  Identities=14%  Similarity=0.156  Sum_probs=98.7

Q ss_pred             cHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 045901            6 LMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVC   85 (171)
Q Consensus         6 v~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~   85 (171)
                      +.++++.|+.+..|++..+++..++.+..+.+++..++-++-.|+ -..|.+.+..++..+-.+...+.+          
T Consensus       255 ~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~~~~~l~~----------  323 (422)
T COG0738         255 IGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLLLAVALIG----------  323 (422)
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHhc----------
Confidence            567899999988999999999999999999999999999999997 888888877766554443333332          


Q ss_pred             cccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 045901           86 DQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVY  165 (171)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~  165 (171)
                                   + ..-..++.++|+-.+.+.|.+.+...+.+++++.      .++..-   ...-+|..+-|.+.++
T Consensus       324 -------------g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts------~~s~~l---~maivGGAiiP~l~G~  380 (422)
T COG0738         324 -------------G-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS------VGSGLL---VMAIVGGAIIPPLQGV  380 (422)
T ss_pred             -------------C-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc------ccceee---eeheecchHHHHHHHH
Confidence                         2 2234556789999999999999999999984332      232221   1223566666888888


Q ss_pred             hccccC
Q 045901          166 IQDNLG  171 (171)
Q Consensus       166 i~~~~g  171 (171)
                      +.|..|
T Consensus       381 i~d~~g  386 (422)
T COG0738         381 IADMFG  386 (422)
T ss_pred             HHHhhh
Confidence            888654

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.62  E-value=8.8e-06  Score=71.55  Aligned_cols=155  Identities=14%  Similarity=0.257  Sum_probs=2.7

Q ss_pred             ccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCC---
Q 045901            5 GLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEK---   81 (171)
Q Consensus         5 gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~---   81 (171)
                      |.......-++++++++.+++|.+.+.+.++..+..++..+.++|. .|-|-+-+|.++..+|.+++++-+.+....   
T Consensus        20 g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~   98 (539)
T PF03137_consen   20 GYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYE   98 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhccHhhcCCCccc
Confidence            3334444566778999999999999999999999999999999997 999999999999999999988755311100   


Q ss_pred             ------------CCcc--------cccccCC-C--Cccc-hhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcch
Q 045901           82 ------------PPVC--------DQMRSGC-E--SATA-SQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKN  137 (171)
Q Consensus        82 ------------~~~~--------~~~~~~~-~--~~~~-~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~  137 (171)
                                  .+-|        .+..+.| +  .... .-...+++|-++.|+|..-..+...+++=|-.+++     
T Consensus        99 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~-----  173 (539)
T PF03137_consen   99 EASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKK-----  173 (539)
T ss_dssp             -----------------------------------------------------SSS------------------------
T ss_pred             cccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccc-----
Confidence                        0012        0000011 1  1111 12356778888899988888888887776654432     


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 045901          138 AGALQSYFSWYYVSIAAGSMLSATFIVYIQ  167 (171)
Q Consensus       138 ~~~~~~~~~~~y~~~niG~~i~~~~~~~i~  167 (171)
                        +...+.++++....+|.++|+++++...
T Consensus       174 --~splYiGi~~~~~~lGPa~Gf~lg~~~L  201 (539)
T PF03137_consen  174 --NSPLYIGILYAMSILGPALGFLLGSFCL  201 (539)
T ss_dssp             ------------------------------
T ss_pred             --cCccchhhhhHHhhccHHHHHHHHHHHH
Confidence              3577888999999999999998887654

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=97.60  E-value=0.00031  Score=59.33  Aligned_cols=98  Identities=13%  Similarity=0.051  Sum_probs=76.8

Q ss_pred             HHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccc
Q 045901           11 ILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRS   90 (171)
Q Consensus        11 ~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~   90 (171)
                      -+-+....|.+..++.++......+..+++...|.++|++ ||||...+..+...+.-++-..+   |            
T Consensus       101 ~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~s---p------------  164 (528)
T KOG0253|consen  101 LPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGAS---P------------  164 (528)
T ss_pred             HHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCC---C------------
Confidence            3445557899999999999999999999999999999998 99999888777666443322221   1            


Q ss_pred             CCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCC
Q 045901           91 GCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGN  133 (171)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~  133 (171)
                              ++..+++-+.+.++|.|+ .|...+.-.|..+..+
T Consensus       165 --------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~  198 (528)
T KOG0253|consen  165 --------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH  198 (528)
T ss_pred             --------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC
Confidence                    455677778899999999 8888888888776543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.58  E-value=0.0013  Score=56.84  Aligned_cols=140  Identities=9%  Similarity=0.060  Sum_probs=90.5

Q ss_pred             HHHHHHHhhHhhCCChHH----HHHHHHHHHHHHhhhhhh----hHHHhhhccCchhHH--HHHHHHHHHHHHHHHHhhh
Q 045901            7 MPNMILYLCREYNMETTA----ATNVLFIWTAATNFVPIL----GAFLADSCMGRYPMI--GFGCIISLLGMVLLWFTAI   76 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~~----a~~~~~~~~~~~~i~~~~----~G~laDr~~Gr~~~i--~~~~~l~~lg~~ll~~~~~   76 (171)
                      .+.+++|..+..+.+...    .+.+.+...+...+..++    ..++.||..+++...  .+|.++..++.+.+.+...
T Consensus       292 ~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~  371 (475)
T TIGR00924       292 PTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIW  371 (475)
T ss_pred             hhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344566666554443211    344444444444444443    335566522344444  7899999999887765431


Q ss_pred             cCCCCCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 045901           77 FPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGS  156 (171)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~  156 (171)
                      ...  +            ..+.+.+.+....++.++|.....|...+++++..|+       +.|+++++.++....+|.
T Consensus       372 ~~~--~------------~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~-------~~~g~~~g~~~l~~~~g~  430 (475)
T TIGR00924       372 FAD--A------------GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ-------RLMGQMLGMWFLAQAMGS  430 (475)
T ss_pred             hcC--C------------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHH
Confidence            110  0            0123567788899999999999999999999997643       247999999999999999


Q ss_pred             HHHhHHHHhhc
Q 045901          157 MLSATFIVYIQ  167 (171)
Q Consensus       157 ~i~~~~~~~i~  167 (171)
                      .++..+.....
T Consensus       431 ~l~~~~~~~~~  441 (475)
T TIGR00924       431 LLGGYLATFGA  441 (475)
T ss_pred             HHHHHHHHHHh
Confidence            98877766543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.58  E-value=0.00067  Score=58.90  Aligned_cols=127  Identities=17%  Similarity=0.145  Sum_probs=92.1

Q ss_pred             HHHhhH-hhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCc-hhHHHHHHHHHHHHHHHH-HHhhhcCCCCCCcccc
Q 045901           11 ILYLCR-EYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGR-YPMIGFGCIISLLGMVLL-WFTAIFPQEKPPVCDQ   87 (171)
Q Consensus        11 ~~yl~~-~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr-~~~i~~~~~l~~lg~~ll-~~~~~~~~~~~~~~~~   87 (171)
                      -+|+++ +.+-+++--|++++....+..++.+..|+.+.|. ++ ||-++.|.++..+|.++= ++.. .|.        
T Consensus        58 wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~Pli~s~ii~~~g~llY~~l~~-~~~--------  127 (488)
T KOG2325|consen   58 WPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKPLIVSFLIAIIGNLLYLALAY-VPN--------  127 (488)
T ss_pred             chhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccCHHHHHHHHHHHHHHHHHHHh-ccc--------
Confidence            356653 4788888999999999999999999999999997 75 788888999999999876 4433 221        


Q ss_pred             cccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 045901           88 MRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVY  165 (171)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~  165 (171)
                               . ..+.++++|++.|+|.|. .+..-.+++|-...++       |.+++.....+.-+|..+||++...
T Consensus       128 ---------~-~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~d-------R~rA~a~~~~~~vlg~ilGp~~q~~  187 (488)
T KOG2325|consen  128 ---------G-VKYLMLVARILTGVGVGN-FAVLRAYIADASTVED-------RPRAFAATSGGFVLGIILGPTIQLA  187 (488)
T ss_pred             ---------c-hHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccc-------hHHHHHHhhhHHHHHHHHhHHHHHH
Confidence                     1 467889999999999654 4666777777544322       4666665545555666666654433

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.57  E-value=0.00043  Score=59.94  Aligned_cols=104  Identities=18%  Similarity=0.141  Sum_probs=76.5

Q ss_pred             HHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCccchhHHHHHHHHHHHHH
Q 045901           33 TAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSL  112 (171)
Q Consensus        33 ~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~  112 (171)
                      .....+..++-|.++||| |||..+...+....+..+.+.+..                        ++.+.  +.-..-
T Consensus        72 ~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~~~~~~~~~------------------------~~~~~--~~~l~g  124 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILPALCLLFQG------------------------YWFFL--LLGLSG  124 (463)
T ss_pred             HHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHhHHHHHHHH------------------------HHHhh--hccccc
Confidence            467888899999999998 999999999999988887665542                        23222  223334


Q ss_pred             hccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhcccc
Q 045901          113 GGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNL  170 (171)
Q Consensus       113 g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~~  170 (171)
                      +.+.......++++|...++       .|.+.+++.+-.+-.+..+++.+++++.+..
T Consensus       125 ~~~~~~s~~~a~vadis~~~-------~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~  175 (463)
T KOG2816|consen  125 GFSAIFSVGFAYVADISSEE-------ERSSSIGLLSGTFGAGLVIGPALGGYLVKFL  175 (463)
T ss_pred             chhhhhhhhhhheeeccchh-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence            44556677777888876542       3788888888888888888888888876643

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.55  E-value=0.0014  Score=57.00  Aligned_cols=114  Identities=12%  Similarity=0.130  Sum_probs=80.0

Q ss_pred             HHHHHHHHhhhhhhh----HHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCccchhHHHHH
Q 045901           29 LFIWTAATNFVPILG----AFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLY  104 (171)
Q Consensus        29 ~~~~~~~~~i~~~~~----G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (171)
                      .+...+...+..++.    +++.||. ++.+.+.++.++..++++++......+..           ++   ..+.+.+.
T Consensus       322 ~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l~~l~f~~l~~~~~~~~~-----------~~---~vs~~~~~  386 (500)
T PRK09584        322 QALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVLCSGAFLVLPLGAKFAND-----------AG---IVSVNWLI  386 (500)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------CC---ccCHHHHH
Confidence            333333444444444    6666665 67788999999999999888776532110           01   12345677


Q ss_pred             HHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045901          105 SAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIV  164 (171)
Q Consensus       105 ~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~  164 (171)
                      ...++.++|.++..|....++.+..|+       +.|+++++.++.+..+|..++..+.+
T Consensus       387 ~~~~l~~~ge~~~~p~g~s~~~~~aP~-------~~rg~~~g~~~l~~a~g~~~~g~~~~  439 (500)
T PRK09584        387 ASYGLQSIGELMISGLGLAMVAQLVPQ-------RLMGFIMGSWFLTTAGAALIAGYVAN  439 (500)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999998643       24789999888888788777766654

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.43  E-value=0.0012  Score=57.14  Aligned_cols=51  Identities=14%  Similarity=0.037  Sum_probs=45.7

Q ss_pred             ceeccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccC
Q 045901            2 ASNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMG   52 (171)
Q Consensus         2 ~~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~G   52 (171)
                      +++-+...+|.|+++.+|++..+.|.....=.+...+..+++|+++||...
T Consensus       273 ~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~  323 (466)
T KOG2532|consen  273 GFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTF  323 (466)
T ss_pred             HHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            345567789999999999999999999999999999999999999999833

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.42  E-value=0.0022  Score=55.10  Aligned_cols=134  Identities=11%  Similarity=0.071  Sum_probs=90.6

Q ss_pred             HHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccc
Q 045901           10 MILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMR   89 (171)
Q Consensus        10 l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~   89 (171)
                      +..|..+.+| +...+.+...+|...+....+.+-|+.|++ |-|.+.+++.++..+|..+=.++. .|.+++.      
T Consensus        67 i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss-~p~v~~~------  137 (480)
T KOG2563|consen   67 INNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISS-LPFVPPL------  137 (480)
T ss_pred             HHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhcc-Ccccccc------
Confidence            4456666777 788888999999999999999999999998 999999999999999998776665 3433221      


Q ss_pred             cCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 045901           90 SGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQ  167 (171)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~  167 (171)
                              ....+.+.|=.+.+..+-++...-.-.-+-.|++++       |..+...=.++..+|.+++..+-+-+.
T Consensus       138 --------f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q-------ra~A~~~~v~~n~LGvavg~llppilV  200 (480)
T KOG2563|consen  138 --------FRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ-------RAIATVLGVMGNPLGVAVGFLLPPILV  200 (480)
T ss_pred             --------chhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch-------hhhhhhHHHhcchHHHHHHhhccceec
Confidence                    011355566666666665554442323344554322       455555545555677777666554443

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.42  E-value=0.0043  Score=46.06  Aligned_cols=104  Identities=11%  Similarity=0.174  Sum_probs=71.2

Q ss_pred             HHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCccchhHHHHHHHH
Q 045901           28 VLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAF  107 (171)
Q Consensus        28 ~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  107 (171)
                      -..+......++.++++.+-++. |.|+++.+|.+.+.+=..-    ...|                    +.+.++.+-
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~----~~~~--------------------~~~~l~~~s   96 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIAS----FFYP--------------------NSYTLYPAS   96 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHH----HHhh--------------------hHHHHHHHH
Confidence            33444455566667777888886 9999999999988744321    1111                    346677777


Q ss_pred             HHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 045901          108 GLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFI  163 (171)
Q Consensus       108 ~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~  163 (171)
                      .+.|+|.+...+..-.++.+..++       +++++..++++...+.+.++|....
T Consensus        97 ~l~G~~~a~lW~aqg~ylt~~s~~-------~~~~~~~~ifw~i~~~s~i~G~~~~  145 (156)
T PF05978_consen   97 ALLGFGAALLWTAQGTYLTSYSTE-------ETIGRNTGIFWAIFQSSLIFGNLFL  145 (156)
T ss_pred             HHHhhhhHHhhHhhhHHHHHcCCH-------HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999998888875432       1356666776666667777665543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.40  E-value=0.00038  Score=62.95  Aligned_cols=156  Identities=16%  Similarity=0.309  Sum_probs=114.5

Q ss_pred             ccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCC-----
Q 045901            5 GLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQ-----   79 (171)
Q Consensus         5 gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~-----   79 (171)
                      +.....+.-+.++++++.++.|.+...+-+++.+..++-.+.+-|. -|-|.+-++.++..+|.+++++-+.+..     
T Consensus       114 ~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~  192 (735)
T KOG3626|consen  114 GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYE  192 (735)
T ss_pred             hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHHHHHHHhChHHhcCcchhh
Confidence            3344455666678999999999999999999999999999999997 9999999999999999999887552111     


Q ss_pred             --------CCC-------------CcccccccCCC---CccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCc
Q 045901           80 --------EKP-------------PVCDQMRSGCE---SATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGA  135 (171)
Q Consensus        80 --------~~~-------------~~~~~~~~~~~---~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~  135 (171)
                              ..+             +.|....+.|.   ..+..-+.+++.+.++.|+|.--..|.-.+++=|-..++   
T Consensus       193 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~---  269 (735)
T KOG3626|consen  193 LEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKK---  269 (735)
T ss_pred             hhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCcccccccccc---
Confidence                    001             00111111221   111113446778889999998888888888776654433   


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 045901          136 KNAGALQSYFSWYYVSIAAGSMLSATFIVYIQD  168 (171)
Q Consensus       136 ~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~  168 (171)
                          +...+.++.|...-+|.++|++++++..+
T Consensus       270 ----~SplYlgi~~~~~~lGPaiGfllgS~~l~  298 (735)
T KOG3626|consen  270 ----NSPLYLGILYSMAILGPAIGFLLGSFCLK  298 (735)
T ss_pred             ----CCcHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence                25778889999999999999999988654

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.38  E-value=0.0055  Score=53.28  Aligned_cols=116  Identities=14%  Similarity=0.090  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHhhhhhhhHHHhhhccCchhHHH-HHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCccchhHHHHH
Q 045901           26 TNVLFIWTAATNFVPILGAFLADSCMGRYPMIG-FGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLY  104 (171)
Q Consensus        26 ~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~-~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (171)
                      +..+++..+...+..++-|-++|+. |+||-++ +..++..+...++.+..                     ++++....
T Consensus        73 ~~~~sis~l~~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~~v~---------------------~~~~~~~~  130 (477)
T PF11700_consen   73 LYANSISGLLQALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLWFVS---------------------PGQWWLAL  130 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHhC---------------------cchHHHHH
Confidence            4566777788888889999999998 6666555 44455555555554432                     11333333


Q ss_pred             HHHHHHHHhccccccchhhhhhhcCCCCCCcc-------------------hhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 045901          105 SAFGLMSLGGGSIRASSLVFGADQLDKGNGAK-------------------NAGALQSYFSWYYVSIAAGSMLSATFI  163 (171)
Q Consensus       105 ~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~-------------------~~~~~~~~~~~~y~~~niG~~i~~~~~  163 (171)
                      +-.++..++.+......+++.-|..++++..+                   ++.++++..++=+...++|+++..++.
T Consensus       131 ~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~  208 (477)
T PF11700_consen  131 VLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLIS  208 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHH
Confidence            33345667777788888888888877654310                   001135666666667778888766543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.29  E-value=0.0005  Score=60.25  Aligned_cols=69  Identities=20%  Similarity=0.283  Sum_probs=55.6

Q ss_pred             ccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHh
Q 045901            5 GLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFT   74 (171)
Q Consensus         5 gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~   74 (171)
                      .+.+.+++|.. ++|+++.+.+.++..--+..++++++.|++||||=-||+.++.+++......+++.+.
T Consensus        29 ~l~pll~vy~k-QLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv   97 (618)
T KOG3762|consen   29 SLFPLLAVYFK-QLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFV   97 (618)
T ss_pred             ccchHHHHHHH-HcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeec
Confidence            46678888886 8999999999999999999999999999999999555555556666666666555543

>PTZ00207 hypothetical protein; Provisional

Probab=97.27  E-value=0.002  Score=57.43  Aligned_cols=121  Identities=7%  Similarity=0.091  Sum_probs=88.5

Q ss_pred             Hhh-CC-ChHHHHH-HHHHHHHHHhhhhhhhHHHhhhccCchh---------HHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 045901           16 REY-NM-ETTAATN-VLFIWTAATNFVPILGAFLADSCMGRYP---------MIGFGCIISLLGMVLLWFTAIFPQEKPP   83 (171)
Q Consensus        16 ~~l-g~-s~~~a~~-~~~~~~~~~~i~~~~~G~laDr~~Gr~~---------~i~~~~~l~~lg~~ll~~~~~~~~~~~~   83 (171)
                      +.+ |. ++.+... .++.+.+.++++.+.+|+++.. +-||+         .+.+..+ ..++.+++.+.-  |     
T Consensus       381 ~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~-~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~--p-----  451 (591)
T PTZ00207        381 TALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIW-SQKRRAEDRVPITIALFIPSV-CIITMLTLFLTL--P-----  451 (591)
T ss_pred             HHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHH-HHhhccccccchhHHHHHHHH-HHHHHHHHHHHC--C-----
Confidence            355 66 3332233 7888999999999999999822 22322         3444455 667777666542  2     


Q ss_pred             cccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH-hHH
Q 045901           84 VCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLS-ATF  162 (171)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~-~~~  162 (171)
                                      ...++++-++.|++.|...+...+...|.|. ++       .++-||..+.+..+|+++= ..+
T Consensus       452 ----------------~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~-------~g~~yN~~~~a~pigs~~~n~~l  507 (591)
T PTZ00207        452 ----------------KAALPLPYFIAAFANGFMAATIALVTRTIFA-KD-------PAKHYNFCFLGSVLSAIFLNRLL  507 (591)
T ss_pred             ----------------ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cc-------hHHHhhHHhHHHHHHHHHHHHHH
Confidence                            1358889999999999999999999999998 44       4889999999999997764 567


Q ss_pred             HHhhccc
Q 045901          163 IVYIQDN  169 (171)
Q Consensus       163 ~~~i~~~  169 (171)
                      .++++|.
T Consensus       508 ~G~~Yd~  514 (591)
T PTZ00207        508 YGEWYTQ  514 (591)
T ss_pred             HHHHHHH
Confidence            8877764

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.20  E-value=0.00014  Score=62.33  Aligned_cols=144  Identities=16%  Similarity=0.175  Sum_probs=102.4

Q ss_pred             HHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhc---cCchhH-HHHHHHHHHHHHHHHHHhhhcCC-CCCC
Q 045901            9 NMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSC---MGRYPM-IGFGCIISLLGMVLLWFTAIFPQ-EKPP   83 (171)
Q Consensus         9 ~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~---~Gr~~~-i~~~~~l~~lg~~ll~~~~~~~~-~~~~   83 (171)
                      .+++|++ .+|.+.+..+.+-.+--+...+..++-|..+||+   +||||- +..+..+..++.++...++.+-. +.++
T Consensus        54 y~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~  132 (498)
T KOG0637|consen   54 YLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDN  132 (498)
T ss_pred             cccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCC
Confidence            4567775 8899999999988888889999999999999974   366665 45666666777776665542110 1110


Q ss_pred             cccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 045901           84 VCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFI  163 (171)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~  163 (171)
                          -+ .+  .++.....+.++..+.=+..-..+.++-++.+|...+++.    ++|  +..++...+.+|..+|+...
T Consensus       133 ----~~-~~--~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~----~~~--Ans~f~~f~avGnvLGY~~g  199 (498)
T KOG0637|consen  133 ----ER-KP--VKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK----KTR--ANSVFSFFMAVGNVLGYALG  199 (498)
T ss_pred             ----cc-cc--cchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh----hhc--cchhHHHHHHhcceeeeecc
Confidence                00 00  1224556777888888888888999999999999876542    122  88899899999999888776


Q ss_pred             Hhh
Q 045901          164 VYI  166 (171)
Q Consensus       164 ~~i  166 (171)
                      +|.
T Consensus       200 ~y~  202 (498)
T KOG0637|consen  200 SYL  202 (498)
T ss_pred             ccc
Confidence            654

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.13  E-value=0.0016  Score=56.83  Aligned_cols=64  Identities=16%  Similarity=0.095  Sum_probs=52.2

Q ss_pred             eeccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhc---cCchhHHHHHHHHHHH
Q 045901            3 SNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSC---MGRYPMIGFGCIISLL   66 (171)
Q Consensus         3 ~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~---~Gr~~~i~~~~~l~~l   66 (171)
                      -|+...++|+|+++-.|+|..+++.+...+.++..++.+++|+++||.   ..+|......+.+..+
T Consensus       289 ~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~  355 (495)
T KOG2533|consen  289 NYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAI  355 (495)
T ss_pred             cccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            367788999999986779999999999999999999999999999993   2666665555544443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=97.11  E-value=0.0021  Score=54.41  Aligned_cols=100  Identities=14%  Similarity=0.109  Sum_probs=69.6

Q ss_pred             HHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCccchhHHHHHHHHHHHHH
Q 045901           33 TAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSL  112 (171)
Q Consensus        33 ~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~  112 (171)
                      ...-+-+-++.+++-||+ ||||++..+.+++.+-.+++.....                  +.. -..++++++..+..
T Consensus       391 slaefPGlLIt~~iverl-GRKkTMal~l~~f~iflfll~~c~~------------------rn~-~tvllf~arafisg  450 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVERL-GRKKTMALSLILFGIFLFLLTTCKT------------------RNA-YTVLLFTARAFISG  450 (528)
T ss_pred             HHhhCCchhHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHhcC------------------cch-hHHHHHHHHHHHhc
Confidence            455667778999999996 9999999999999988877765431                  111 12345667776665


Q ss_pred             hccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 045901          113 GGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFI  163 (171)
Q Consensus       113 g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~  163 (171)
                      +.+    +++.+.-|.+|..       .|....+--.-...+|+++.|.+.
T Consensus       451 ~fq----vaYvYtPEVyPTa-------vRatgvGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  451 AFQ----VAYVYTPEVYPTA-------VRATGVGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             hhe----EEEEecCcccchh-------hhhcchhhhhhHHhhhhhhhhHHH
Confidence            544    4455556777643       366666666667789999988665

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.11  E-value=0.001  Score=59.74  Aligned_cols=69  Identities=20%  Similarity=0.278  Sum_probs=57.8

Q ss_pred             ceeccHHHHHHHhhHhhCCChHHHHHHHHHHHH-HHhhhhhhhHHHhhhccC--chhHHHHHHHHHHHHHHHH
Q 045901            2 ASNGLMPNMILYLCREYNMETTAATNVLFIWTA-ATNFVPILGAFLADSCMG--RYPMIGFGCIISLLGMVLL   71 (171)
Q Consensus         2 ~~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~-~~~i~~~~~G~laDr~~G--r~~~i~~~~~l~~lg~~ll   71 (171)
                      .+++...++|.|+++++|+++.+++.+.....+ ...++.+++|++.||+ +  .|+.+.+++++..++.++.
T Consensus       345 ~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~~~~~~~~~~~~~~~~~~~~~~  416 (633)
T TIGR00805       345 AFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-KLNVKKAAYFAICLSTLSYLLC  416 (633)
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-cccHHHHHHHHHHHHHHHHHHH
Confidence            356778899999999999999999999987765 5678999999999997 7  5678888888888776553

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.10  E-value=0.0061  Score=40.67  Aligned_cols=65  Identities=9%  Similarity=0.065  Sum_probs=58.2

Q ss_pred             HHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhh
Q 045901           10 MILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTA   75 (171)
Q Consensus        10 l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~   75 (171)
                      +.+.+.++.++|..+++.+-+...++..++.+...++.++. .+++.+..+.++..+..+.+.+..
T Consensus        14 lLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen   14 LLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             HhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55677789999999999999999999999999999999996 888999999999998888887654

Note that many members are hypothetical proteins.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=96.94  E-value=0.0054  Score=52.40  Aligned_cols=131  Identities=10%  Similarity=0.156  Sum_probs=98.3

Q ss_pred             HHHHhhHhh---CCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 045901           10 MILYLCREY---NMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCD   86 (171)
Q Consensus        10 l~~yl~~~l---g~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~   86 (171)
                      .+.|.+..+   +.++...|.+.+.....-.+.-.+..++-+|+ |.|+.++++.++..+=-+.+.++.           
T Consensus       243 f~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~i~~iRi~~~~~~~-----------  310 (412)
T PF01306_consen  243 FPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGVIMAIRIIGSGFAT-----------  310 (412)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT-------------
T ss_pred             HHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHHHHHHHHHHHhhhc-----------
Confidence            456666433   45566778888888888888899999999997 999999999999887766665543           


Q ss_pred             ccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHH-HHHHHHHHHHHHhHHHHh
Q 045901           87 QMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSW-YYVSIAAGSMLSATFIVY  165 (171)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~-~y~~~niG~~i~~~~~~~  165 (171)
                                  +.+.+...-.+-++-.+.....+--++++.++++       ...+.+.+ +..+..+|..+-..+.|+
T Consensus       311 ------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~r-------lsAt~y~v~~~~~~~~~~~i~s~~~G~  371 (412)
T PF01306_consen  311 ------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKR-------LSATLYLVGFQFAKQIGIIILSPLAGY  371 (412)
T ss_dssp             ------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GG-------GHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             ------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh-------HHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence                        3556667778888888888888999999998632       24566665 346677888888889999


Q ss_pred             hccccC
Q 045901          166 IQDNLG  171 (171)
Q Consensus       166 i~~~~g  171 (171)
                      ++|++|
T Consensus       372 lyd~~G  377 (412)
T PF01306_consen  372 LYDRIG  377 (412)
T ss_dssp             HHHHHH
T ss_pred             hHhhcC
Confidence            998765

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=96.93  E-value=0.0075  Score=51.50  Aligned_cols=129  Identities=20%  Similarity=0.123  Sum_probs=85.5

Q ss_pred             cHHHHHHHhhHhhCC---Ch----HHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcC
Q 045901            6 LMPNMILYLCREYNM---ET----TAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFP   78 (171)
Q Consensus         6 v~~~l~~yl~~~lg~---s~----~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~   78 (171)
                      +...+|+|+++..+-   ++    +..+...++......+..++-|-++|+..-|||.+-+..++..+....+.+..   
T Consensus        34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~---  110 (438)
T COG2270          34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIP---  110 (438)
T ss_pred             eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhC---
Confidence            345789999986654   33    34455566677778888889999999995556666677777776666665543   


Q ss_pred             CCCCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 045901           79 QEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSML  158 (171)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i  158 (171)
                      .                 ...++...+-+.+..++..+.+...+++..|..++++..     |.+..+|  -.-++|+.+
T Consensus       111 ~-----------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~-----riS~lg~--~~gylgs~i  166 (438)
T COG2270         111 P-----------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMG-----RISGLGW--ALGYLGSVI  166 (438)
T ss_pred             C-----------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccC-----ccccccc--ccccccchH
Confidence            1                 124555556667899999999999999999987765431     3333333  344555555


Q ss_pred             HhH
Q 045901          159 SAT  161 (171)
Q Consensus       159 ~~~  161 (171)
                      ..+
T Consensus       167 ~li  169 (438)
T COG2270         167 LLI  169 (438)
T ss_pred             HHH
Confidence            443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.78  E-value=0.013  Score=50.84  Aligned_cols=125  Identities=15%  Similarity=0.204  Sum_probs=97.6

Q ss_pred             HHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccc
Q 045901           11 ILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRS   90 (171)
Q Consensus        11 ~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~   90 (171)
                      ..|+..++++++.+.+...+.......++.++...+=-+.+|-|+.+..|+....+...+..++.               
T Consensus       265 ~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~---------------  329 (463)
T KOG2816|consen  265 LLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT---------------  329 (463)
T ss_pred             EEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc---------------
Confidence            45667789999999999999999999999998884444445999999999999999999888875               


Q ss_pred             CCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901           91 GCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI  166 (171)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i  166 (171)
                              +.|..+.+..+. ...+...|...++.+.+.+.++       +++.+.|......+...+++.+-+.+
T Consensus       330 --------~~w~~~~~~v~~-~~~~~~~pa~~s~~s~~v~~~e-------~g~v~~~is~i~~l~~~~~~~~~~~i  389 (463)
T KOG2816|consen  330 --------ETWMMFAAGVVV-ALAGIVFPAIRAFASILVSPEE-------QGKVFGIISGIEGLSGVVSPALYGNI  389 (463)
T ss_pred             --------cchhhhHHHHHH-HhhcchhHHHHhHHHhhccccc-------ccchhhHHHHHHHHhhhhhHHHHHHH
Confidence                    334555554444 4447788888888888765432       58899999888888888888766655

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=96.43  E-value=1.7e-05  Score=67.04  Aligned_cols=133  Identities=11%  Similarity=0.107  Sum_probs=77.2

Q ss_pred             HHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHH-HhhhcCCCCCCccccccc
Q 045901           12 LYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLW-FTAIFPQEKPPVCDQMRS   90 (171)
Q Consensus        12 ~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~-~~~~~~~~~~~~~~~~~~   90 (171)
                      .++.+..+.++.  -.......+...++.+++.++.||+ |||++++++..+..+..+.+. .....+...         
T Consensus       277 ~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~---------  344 (451)
T PF00083_consen  277 PSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAICSLILGIIFFLGVSSS---------  344 (451)
T ss_pred             cccccccccccc--ccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccc---------
Confidence            333445666666  2233344466677778888999997 999999999998888776664 111000000         


Q ss_pred             CCCCccchhHHHHHHHHHHHHHhcc-ccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 045901           91 GCESATASQLMLLYSAFGLMSLGGG-SIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDN  169 (171)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~l~g~g~G-~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~  169 (171)
                           +..+.. ..+...+.....+ +..+....+.+|.+|.+.       |.+..++.+...++++++++.+.+++.++
T Consensus       345 -----~~~~~~-~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~-------R~~~~~~~~~~~~i~~~i~~~~~~~~~~~  411 (451)
T PF00083_consen  345 -----SWWSIL-SIVFLALFFAFFSLGWGPLPWIYTAELFPTKV-------RSTGIGLSYAVGRIGGFIIPFLFPYLFNN  411 (451)
T ss_pred             -----cccccc-cceeeeeccccccccccccccccccccccccc-------ccccccccccccccccccccccccccccc
Confidence                 000111 1111122212222 334555577799997543       57777777777777777777766666554

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR01272 gluP glucose/galactose transporter

Probab=96.27  E-value=0.0099  Score=48.51  Aligned_cols=63  Identities=10%  Similarity=-0.007  Sum_probs=53.2

Q ss_pred             hhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 045901           98 SQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQ  167 (171)
Q Consensus        98 ~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~  167 (171)
                      .+++.++++.++++.|.+..++..+++++|.-++++       +.+..|+......+|++++|.+.+.+.
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~-------~~~~l~~~~~~~~~G~~~gP~i~~~~i   70 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET-------AASRLALTQAFNKLGTTVAPLFGGSLI   70 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch-------HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            368899999999999999999999999999875432       566777877888899999999888665

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=96.26  E-value=0.15  Score=44.36  Aligned_cols=57  Identities=16%  Similarity=0.246  Sum_probs=44.4

Q ss_pred             hhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhh
Q 045901           17 EYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTA   75 (171)
Q Consensus        17 ~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~   75 (171)
                      ..|.+... .....+......++..++.++-||+ |||+.++.+.....++.+++....
T Consensus       324 ~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~m~~~~~~~~~~~  380 (513)
T KOG0254|consen  324 SAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAGMSICLVILAVVG  380 (513)
T ss_pred             hcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHHHHHHHHHHHHHH
Confidence            44555443 4445555667777788889999998 999999999999999998887654

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=96.07  E-value=0.13  Score=44.81  Aligned_cols=133  Identities=8%  Similarity=-0.013  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHhhhhhhhHHHhhhccCc-hhHHHHHHHHHHHHHHHHHHhhhcCC-CCCCcccccccCCCCccchhHHHHH
Q 045901           27 NVLFIWTAATNFVPILGAFLADSCMGR-YPMIGFGCIISLLGMVLLWFTAIFPQ-EKPPVCDQMRSGCESATASQLMLLY  104 (171)
Q Consensus        27 ~~~~~~~~~~~i~~~~~G~laDr~~Gr-~~~i~~~~~l~~lg~~ll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  104 (171)
                      .....+.+.+.+.+++--++.+|+ |+ |+.-.++.++..++.+...+....+. ..+  ........ .+.....+..+
T Consensus       309 ~~l~~~s~~~~i~s~~l~~l~~~~-g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~--~~~~~~~~-~~~~~~~~~~l  384 (477)
T TIGR01301       309 FGLMLNSVVLGITSIGMEKLCRGW-GAGKRLWGIVNIILAICLAATVLVTYVAKNSRY--YDGDGESL-PPPTGIKASAL  384 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHHHHHhhhhcccc--cccccccc-CcchhhHHHHH
Confidence            334445555567777888899997 85 66668998888888877765432110 000  00000000 11111134455


Q ss_pred             HHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 045901          105 SAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQD  168 (171)
Q Consensus       105 ~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~  168 (171)
                      +-..++|+.++.....-.+++++..++++.     +.+..+++++.++-+..++.....+.+.+
T Consensus       385 ~~~~~~Gi~~A~~~siPfal~s~~~~~~~~-----~~G~~mgilN~~I~lpQii~sl~~g~~~~  443 (477)
T TIGR01301       385 IVFAILGIPLAITYSIPFALASIRSSNLGA-----GQGLSMGVLNLAIVIPQIIVSLGSGPWDQ  443 (477)
T ss_pred             HHHHHhhHHHHHHHHHhHHHHHHHccccCC-----CCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            556789999999999999999998874332     25888999989999988888776666444

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=96.05  E-value=0.058  Score=48.28  Aligned_cols=135  Identities=10%  Similarity=-0.041  Sum_probs=82.1

Q ss_pred             eeccHHHHHHHhhHhhCCChH---HHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHH-HHHHHHHHHHHHHHHHhhhcC
Q 045901            3 SNGLMPNMILYLCREYNMETT---AATNVLFIWTAATNFVPILGAFLADSCMGRYPMI-GFGCIISLLGMVLLWFTAIFP   78 (171)
Q Consensus         3 ~~gv~~~l~~yl~~~lg~s~~---~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i-~~~~~l~~lg~~ll~~~~~~~   78 (171)
                      ||++..+.|......++-++.   +++........+..++.++.|++.-+. +|.|-. +++.++..++...++...  |
T Consensus       326 ~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li~~~~~~ta~~Gama~~~--~  402 (599)
T PF06609_consen  326 FFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLIFGSVLMTAFCGAMAAVR--P  402 (599)
T ss_pred             HHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHHHHHHHHHHHHHHHHHcc--C
Confidence            445555555555555555543   466777777778888888899999876 666655 577777766666554432  1


Q ss_pred             CCCCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 045901           79 QEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSML  158 (171)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i  158 (171)
                      .                   +......-.++.++|.|+.......  .-|+.-  |+|   ..+...+..-....+|..|
T Consensus       403 ~-------------------n~~~~i~~~~l~g~giG~~~~~~~~--~~ql~~--p~~---~ig~a~gL~~s~R~~GGsI  456 (599)
T PF06609_consen  403 D-------------------NKNAAIAFLVLAGFGIGGILVPAIV--IAQLIV--PDE---DIGTATGLTGSIRSIGGSI  456 (599)
T ss_pred             C-------------------CcchHHHHHHHHHHhHHHHHHHHHH--eeEeee--Cch---HHHHHHHHHHHHHHHhhHH
Confidence            0                   1111223345677777766544443  334432  221   3788888888888888888


Q ss_pred             HhHHHHhh
Q 045901          159 SATFIVYI  166 (171)
Q Consensus       159 ~~~~~~~i  166 (171)
                      +..+..-+
T Consensus       457 g~aIy~~I  464 (599)
T PF06609_consen  457 GYAIYNAI  464 (599)
T ss_pred             HHHHHHHH
Confidence            87655433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=95.82  E-value=0.033  Score=47.35  Aligned_cols=132  Identities=12%  Similarity=0.089  Sum_probs=91.9

Q ss_pred             HHHHHHHh-hHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchh-HHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 045901            7 MPNMILYL-CREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYP-MIGFGCIISLLGMVLLWFTAIFPQEKPPV   84 (171)
Q Consensus         7 ~~~l~~yl-~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~-~i~~~~~l~~lg~~ll~~~~~~~~~~~~~   84 (171)
                      ..+...++ ++.+|+++.|.|.+.+.-.....+....-....||..|.-+ .+..++.+..-..+++..+.         
T Consensus       280 ~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~---------  350 (451)
T KOG2615|consen  280 LENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLAR---------  350 (451)
T ss_pred             HHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccc---------
Confidence            34445555 45799999999999988888888878788888888744433 44445554444444443332         


Q ss_pred             ccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045901           85 CDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIV  164 (171)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~  164 (171)
                                    ....++.+..+-.+..+...|+...++....+.    +   +|+...+++-....++-++||.+.+
T Consensus       351 --------------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~----~---qrG~~~Gi~~Sl~alaRaiGPlv~g  409 (451)
T KOG2615|consen  351 --------------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQ----S---QRGTLNGIFRSLGALARAIGPLVSG  409 (451)
T ss_pred             --------------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCc----c---cchHHHHHHHHHHHHHHHhhhhhhh
Confidence                          235677888888999888888888777665432    1   2688888887788888888888776


Q ss_pred             hhcc
Q 045901          165 YIQD  168 (171)
Q Consensus       165 ~i~~  168 (171)
                      .++.
T Consensus       410 ~i~~  413 (451)
T KOG2615|consen  410 VIFS  413 (451)
T ss_pred             eeEE
Confidence            6553

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.67  E-value=0.2  Score=42.85  Aligned_cols=68  Identities=18%  Similarity=0.161  Sum_probs=52.0

Q ss_pred             HHHHHHHhhHh-hCCChHHHHHHHHHHH-HHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhh
Q 045901            7 MPNMILYLCRE-YNMETTAATNVLFIWT-AATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTA   75 (171)
Q Consensus         7 ~~~l~~yl~~~-lg~s~~~a~~~~~~~~-~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~   75 (171)
                      .+++..|++++ .|+++.|...-+.... -.....-++...+.|.. +-|++++++.+...+...++.+..
T Consensus        23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~   92 (412)
T PF01770_consen   23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGT   92 (412)
T ss_pred             CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHC
Confidence            46788999997 8999999876554443 34444555788999996 899999988888888877776654

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=95.58  E-value=0.0043  Score=50.64  Aligned_cols=88  Identities=17%  Similarity=0.116  Sum_probs=64.3

Q ss_pred             HhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCC
Q 045901           13 YLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGC   92 (171)
Q Consensus        13 yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~   92 (171)
                      |+...+++-..+.+.+.-+-.+.+++...+.|.|+|+- |||+.-+.-++.+.    +..+....               
T Consensus        62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtycitYi----LsCiTKhS---------------  121 (454)
T KOG4332|consen   62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCITYI----LSCITKHS---------------  121 (454)
T ss_pred             eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehHHHH----HHHHhhcC---------------
Confidence            44456788888888888877888888889999999997 99997554444444    44433211               


Q ss_pred             CCccchhHHHHHHHHHHHHHhccccccchhhhh
Q 045901           93 ESATASQLMLLYSAFGLMSLGGGSIRASSLVFG  125 (171)
Q Consensus        93 ~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~  125 (171)
                           .++-.+++|+++-|+.+........+..
T Consensus       122 -----pqYkVLmVGR~LGGiaTsLLFSaFEsWl  149 (454)
T KOG4332|consen  122 -----PQYKVLMVGRVLGGIATSLLFSAFESWL  149 (454)
T ss_pred             -----CceEEEeehhhhhhHHHHHHHHHHHHHH
Confidence                 1466788999999999888777666544

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.24  E-value=1.2  Score=38.53  Aligned_cols=132  Identities=11%  Similarity=-0.013  Sum_probs=91.2

Q ss_pred             HHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 045901            8 PNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQ   87 (171)
Q Consensus         8 ~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~   87 (171)
                      +.++.|+..+ |+++...+..-+.-.+....+.++..++-+|+ |..|+=..+......-..+...+-..|.. |     
T Consensus       279 ~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~~-~-----  350 (432)
T PF06963_consen  279 GLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPGS-P-----  350 (432)
T ss_pred             HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCCC-C-----
Confidence            4677888877 99999999999999999999999999999998 99999999998887666555443222210 0     


Q ss_pred             cccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhH
Q 045901           88 MRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSAT  161 (171)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~  161 (171)
                             .+..+...++.+.++-=+|.=++.-+...++-|..+    +   .+|+...+.-.-.-|+--++.+.
T Consensus       351 -------~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~----~---~~Rg~v~gvq~sl~~lf~ll~~~  410 (432)
T PF06963_consen  351 -------FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVP----E---SERGAVSGVQNSLQSLFELLSFV  410 (432)
T ss_pred             -------chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCC----H---HHhhHHHHHHHHHHHHHHHHHHH
Confidence                   012345667777777777776666666655555433    2   13676666655555555554443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.16  E-value=0.0055  Score=54.09  Aligned_cols=160  Identities=13%  Similarity=0.179  Sum_probs=0.0

Q ss_pred             eeccHHHHHHHhhHhhCCChHHHHHHHHHHHH-HHhhhhhhhHHHhhhc-cCchhHHHHHHHHHHHHHHHHHH-----hh
Q 045901            3 SNGLMPNMILYLCREYNMETTAATNVLFIWTA-ATNFVPILGAFLADSC-MGRYPMIGFGCIISLLGMVLLWF-----TA   75 (171)
Q Consensus         3 ~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~-~~~i~~~~~G~laDr~-~Gr~~~i~~~~~l~~lg~~ll~~-----~~   75 (171)
                      .-|...++|-|++.+++.++.+|+.+.+...+ +..++.++||++-.|+ +..|+++....+...++.++...     ..
T Consensus       321 ~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~  400 (539)
T PF03137_consen  321 VSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCP  400 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCC
Confidence            45677899999999999999999999977765 6778888999999997 45667777766666666554111     01


Q ss_pred             h-------cCC------CC----CCccccc---------ccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcC
Q 045901           76 I-------FPQ------EK----PPVCDQM---------RSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQL  129 (171)
Q Consensus        76 ~-------~~~------~~----~~~~~~~---------~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~  129 (171)
                      .       .|.      ..    ..+|+..         ...|+..-..+...|++.+++..+-.+...+......-+..
T Consensus       401 ~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V  480 (539)
T PF03137_consen  401 NPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCV  480 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccC
Confidence            0       000      00    0023221         23554431224556666655555555544444443333444


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHH-HHHHHHhHHHHhhccc
Q 045901          130 DKGNGAKNAGALQSYFSWYYVSIA-AGSMLSATFIVYIQDN  169 (171)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~y~~~n-iG~~i~~~~~~~i~~~  169 (171)
                      ++   +|    |..+.++.+.... +|.+=+|++.+.+.|+
T Consensus       481 ~~---~~----rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  481 PP---EQ----RSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             -----------------------------------------
T ss_pred             Ch---hh----cchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            32   22    4556666544444 6888889988888763

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK03612 spermidine synthase; Provisional

Probab=94.80  E-value=0.6  Score=41.18  Aligned_cols=39  Identities=13%  Similarity=0.058  Sum_probs=32.1

Q ss_pred             HHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhc
Q 045901           12 LYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSC   50 (171)
Q Consensus        12 ~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~   50 (171)
                      -.+...+|-+..+.+.++++|..+..++..++++++++-
T Consensus        39 r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~   77 (521)
T PRK03612         39 TLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA   77 (521)
T ss_pred             HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence            344456789999999999999999999999988887553

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=94.43  E-value=1.4  Score=38.69  Aligned_cols=122  Identities=12%  Similarity=0.068  Sum_probs=76.4

Q ss_pred             CChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCc-hh------HHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCC
Q 045901           20 METTAATNVLFIWTAATNFVPILGAFLADSCMGR-YP------MIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGC   92 (171)
Q Consensus        20 ~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr-~~------~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~   92 (171)
                      .++.+-..++..+   ..+..++.+++=.|. .| ||      =+.+|+++..++++++.++......+           
T Consensus       308 ip~~~~qslNp~~---ii~l~P~~a~lw~~l-~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~-----------  372 (493)
T PRK15462        308 VPTAMFQSINAFA---VMLCGVFLAWVVKES-VAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMY-----------  372 (493)
T ss_pred             eCHHHHHhHhHHH---HHHHHHHHHHHHHHH-hcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCC-----------
Confidence            4444444444433   344444555565554 33 22      16789999999998887765322100           


Q ss_pred             CCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHH-HHHHHHHhHHHHhh
Q 045901           93 ESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSI-AAGSMLSATFIVYI  166 (171)
Q Consensus        93 ~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~-niG~~i~~~~~~~i  166 (171)
                        . ..+.+.+.....+.++|.=...|...+++++.-|+       +.++..++.++... .+|..++..+.++.
T Consensus       373 --~-~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~-------~~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        373 --G-HSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIP-------GVTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             --C-CcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              0 12445577778889999999999999999998642       24677888776533 56666665555544

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=94.20  E-value=0.87  Score=41.34  Aligned_cols=136  Identities=10%  Similarity=-0.090  Sum_probs=104.4

Q ss_pred             HHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccc
Q 045901           11 ILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRS   90 (171)
Q Consensus        11 ~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~   90 (171)
                      .++..--.+............+.....+.++.....+|-..++......-.+...++.+...+.. ++..          
T Consensus         8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~lla-i~a~----------   76 (654)
T TIGR00926         8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLS-FGAI----------   76 (654)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hccC----------
Confidence            34444445666677888999999999999999999999998888899888888888887776655 2211          


Q ss_pred             CCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901           91 GCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI  166 (171)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i  166 (171)
                          +...+.....+.++.+.++.++..++.+...+++.+..++    +++++...+|+|..+.+.+.+. ++..+
T Consensus        77 ----~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~----~~~~~~~s~F~~fY~~iNiGSl-is~~i  143 (654)
T TIGR00926        77 ----PSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE----RQLSLRSRFFSFFYFAINAGSL-ISTII  143 (654)
T ss_pred             ----cccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc----cchhHHHHHHHHHHHHHHHHHH-HHHHH
Confidence                1122334456688889999999999999999999875432    6677899999999999988644 44443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=93.68  E-value=0.14  Score=44.59  Aligned_cols=139  Identities=15%  Similarity=0.087  Sum_probs=83.9

Q ss_pred             ceeccHHHHHHHhhHhhCCChHHHHH--------HHHHHHHHHhh-hhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHH
Q 045901            2 ASNGLMPNMILYLCREYNMETTAATN--------VLFIWTAATNF-VPILGAFLADSCMGRYPMIGFGCIISLLGMVLLW   72 (171)
Q Consensus         2 ~~~gv~~~l~~yl~~~lg~s~~~a~~--------~~~~~~~~~~i-~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~   72 (171)
                      ++|+..-+....++ .+|+.+.+...        ........+.+ +..+..++.|+. |||+.-+-+.+++.+-.+.+.
T Consensus       319 afy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq~~GF~~~~i~~~~~~  396 (538)
T KOG0252|consen  319 AFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQLMGFFIMTIFFFVIA  396 (538)
T ss_pred             hhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHHHhhHHHHHHHHHHHc
Confidence            45666666655554 34444443333        33333444444 666788899997 999999999999997776554


Q ss_pred             HhhhcCCCCCCcccccccCCCCccchhH-HHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHH
Q 045901           73 FTAIFPQEKPPVCDQMRSGCESATASQL-MLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVS  151 (171)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~  151 (171)
                      ..-          ++      ....... ...-+..++..+|=+...-.++   +|.++.       +-|+.++++--.+
T Consensus       397 ~~y----------~~------~~~~~Gf~v~y~l~~ff~NFGPn~ttfivp---aE~FPa-------rvR~t~hGIsAA~  450 (538)
T KOG0252|consen  397 GPY----------NQ------LENTIGFVVLYSLTFFFGNFGPNATTFIVP---AEIFPA-------RVRSTCHGISAAS  450 (538)
T ss_pred             CCc----------cc------ccccCceeehHHHHHHHHhcCCCceeEEee---hhhchH-------HHhhhhhhHHHHh
Confidence            321          10      0001111 1222333444455444333333   677753       3588999987777


Q ss_pred             HHHHHHHHhHHHHhhcc
Q 045901          152 IAAGSMLSATFIVYIQD  168 (171)
Q Consensus       152 ~niG~~i~~~~~~~i~~  168 (171)
                      -=+|++++.....++.+
T Consensus       451 GK~GAivg~~~F~~~t~  467 (538)
T KOG0252|consen  451 GKAGAIVGAFGFLYLTD  467 (538)
T ss_pred             ccchHHHHHHHhhHhhh
Confidence            77899999988888877

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=93.45  E-value=1.7  Score=37.95  Aligned_cols=132  Identities=11%  Similarity=0.075  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHhhh-hhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCC---CCCCc-ccccccCCCCcc-
Q 045901           23 TAATNVLFIWTAATNFV-PILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQ---EKPPV-CDQMRSGCESAT-   96 (171)
Q Consensus        23 ~~a~~~~~~~~~~~~i~-~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~---~~~~~-~~~~~~~~~~~~-   96 (171)
                      +....+.........+. .++-+++++|+ +|+|.+.+-...+.+-.++..+.- .|.   .+|+. |++...  ..+. 
T Consensus        43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~~~~~F~~~f~lF~~vl-~p~~~~~~p~~~~~~~~~--~~~~~  118 (472)
T TIGR00769        43 EIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYTVISPFLGFFALFAFVI-YPLSDLLHPTALADKLLS--LLPPG  118 (472)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHHHHHHHHHHHHHHHHHH-hcchhhcCCcHHHHHHHh--hcchh
Confidence            34455555444444444 67899999998 999999887777666655554432 222   22211 000000  0000 


Q ss_pred             ---------chhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 045901           97 ---------ASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQ  167 (171)
Q Consensus        97 ---------~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~  167 (171)
                               .+....|++..-+.+.-.  ..-..-++..|.+..+       +..|+|..+..+.|+|.++++.+..++.
T Consensus       119 ~~~~i~~~~~W~~~~FYv~~elw~~~v--vS~lFW~fandi~t~~-------qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       119 FMGFIAILRIWSFALFYVMAELWGSVV--LSLLFWGFANQITTID-------EAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             hHHHHHHHhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     111123332222111110  1112334557877542       2578999999999999999998888765

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=93.42  E-value=0.21  Score=43.33  Aligned_cols=135  Identities=13%  Similarity=0.048  Sum_probs=71.4

Q ss_pred             HhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhcc---CchhHHHHHHHHHHHHHHHHHHhhh-cCCCCCCccccc
Q 045901           13 YLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCM---GRYPMIGFGCIISLLGMVLLWFTAI-FPQEKPPVCDQM   88 (171)
Q Consensus        13 yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~---Gr~~~i~~~~~l~~lg~~ll~~~~~-~~~~~~~~~~~~   88 (171)
                      |..+-.|.+..+......++..+..++.++||.++||+-   -|-....+..+....|..+.+..-. .|...       
T Consensus       273 ~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~-------  345 (493)
T KOG1330|consen  273 YSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFT-------  345 (493)
T ss_pred             HHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhh-------
Confidence            334445678888888889999999999999999999920   2223444444444444332221110 11100       


Q ss_pred             ccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHH-HHHHHHhHHHHhhc
Q 045901           89 RSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIA-AGSMLSATFIVYIQ  167 (171)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~n-iG~~i~~~~~~~i~  167 (171)
                          ....-+.+.+++++..+...+++.-    .+...+..++    +   +|..++.+-+...- .|.+-+|-+.+.++
T Consensus       346 ----~~s~~~~~il~~~g~~~~~~~~a~n----~~i~l~vV~p----~---~Rt~a~a~~~~~~h~fgd~~~p~ivGils  410 (493)
T KOG1330|consen  346 ----SSSMIFGLILFLVGETISWFNWATN----NPIFLEVVPP----S---RRTTAYALDTVFEHIFGDAASPYIVGILS  410 (493)
T ss_pred             ----hHHHHHHHHHHHHHHHHHhcccccc----cceeeEecCc----c---cccHHHHHHHHHHHHhccCCCcceehhHH
Confidence                0000122344445555555544333    2233354432    2   36777777655444 34444454666666


Q ss_pred             cc
Q 045901          168 DN  169 (171)
Q Consensus       168 ~~  169 (171)
                      |+
T Consensus       411 d~  412 (493)
T KOG1330|consen  411 DK  412 (493)
T ss_pred             HH
Confidence            54

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=91.44  E-value=4.6  Score=34.93  Aligned_cols=102  Identities=12%  Similarity=0.096  Sum_probs=63.4

Q ss_pred             HHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCccchhHHHHHHHHHHHHHhc
Q 045901           35 ATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGG  114 (171)
Q Consensus        35 ~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~  114 (171)
                      .........+.+-|+. |||.....+.++..++.+.......   ...             .........++...++.+ 
T Consensus       362 ~~~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------~~~~~~~~~~~~~~~~~~-  423 (521)
T KOG0255|consen  362 VELPAYFRNGLLLPEF-GRRPPLFLSLFLAGIGLLLFGWLPD---DLG-------------GWLHWILPLLGKFFIGSA-  423 (521)
T ss_pred             HHhhHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHhhc---cch-------------hHHHHHHHHHHHHHHHHH-
Confidence            3334444568999997 9999999999999999887766531   000             000122222333333333 


Q ss_pred             cccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045901          115 GSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIV  164 (171)
Q Consensus       115 G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~  164 (171)
                         ......+.+|.+++.       .|..+.+.......+|+++++.+.-
T Consensus       424 ---~~~~~~~~~el~pt~-------~r~~~~~~~~~~~~~~~i~ap~~~~  463 (521)
T KOG0255|consen  424 ---FNLIFLYSAELIPTV-------VRNTAVGAISAAARLGSILAPLFPL  463 (521)
T ss_pred             ---HHHHHHHHHhhccHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               333366668888643       3677777777778888888876543

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.05  E-value=5.5  Score=34.73  Aligned_cols=91  Identities=21%  Similarity=0.279  Sum_probs=58.0

Q ss_pred             HHHHhhhhhhhHHHh---hhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCc--cchhHHHHHHHH
Q 045901           33 TAATNFVPILGAFLA---DSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESA--TASQLMLLYSAF  107 (171)
Q Consensus        33 ~~~~~i~~~~~G~la---Dr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l  107 (171)
                      ..+..++.+..+.++   +|+ ||++++.++.+++.++.++.-++  .|...|-     .+..+.+  .+++.....+--
T Consensus       289 g~g~v~~g~~~~~l~~rir~f-g~~~~~~~~~~~~~~~~~li~l~--~p~dap~-----~~t~~~~~~~~~~~~~~~ii~  360 (461)
T KOG3098|consen  289 GLGEVIGGLDFSILSKRIRGF-GRKPTVLIGIIIHLIGFLLIHLS--FPNDAPL-----RPTDSPPLLFTPSYYLALIIG  360 (461)
T ss_pred             hHHHHHHHHHHHHHhhhhhhc-ccCcchhHHHHHHHHHHHHHhcc--ccccCCC-----CCCcccccccccchhHHHHHH
Confidence            345555566666666   555 99999999999999998765443  4433321     1111111  111232333333


Q ss_pred             HHHHHhccccccchhhhhhhcCCC
Q 045901          108 GLMSLGGGSIRASSLVFGADQLDK  131 (171)
Q Consensus       108 ~l~g~g~G~~~~~~~~~~ad~~~~  131 (171)
                      .+.|++-+..+......+++.+++
T Consensus       361 ~l~G~~D~~~~t~~~~ii~~~~~~  384 (461)
T KOG3098|consen  361 FLLGFGDACFNTQRYVIIALLYPD  384 (461)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHhcC
Confidence            578999999999999999998843

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=88.91  E-value=0.69  Score=41.12  Aligned_cols=93  Identities=11%  Similarity=0.066  Sum_probs=66.3

Q ss_pred             HhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCc
Q 045901           16 REYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESA   95 (171)
Q Consensus        16 ~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~   95 (171)
                      ++++-.+.--|.+...--.+-.+.-++.++|-.++ |+-+++.+++....+=++..+...                    
T Consensus       399 ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~L~--------------------  457 (618)
T KOG3762|consen  399 EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSYLQ--------------------  457 (618)
T ss_pred             hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHHhc--------------------
Confidence            34554444444333333344555666888999998 999999999999988877666554                    


Q ss_pred             cchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCC
Q 045901           96 TASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKG  132 (171)
Q Consensus        96 ~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~  132 (171)
                         ++|..+.-=++.++-.+.+..++.+++++..+++
T Consensus       458 ---n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~  491 (618)
T KOG3762|consen  458 ---NPWMVLPIEILQGITHALIWAAIISYASHVAPPG  491 (618)
T ss_pred             ---CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence               3444444446899999999999999999988754

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.58  E-value=0.78  Score=42.06  Aligned_cols=69  Identities=16%  Similarity=0.217  Sum_probs=50.6

Q ss_pred             ceeccHHHHHHHhhHhhCCChHHHHHHHHHHHH-HHhhhhhhhHHHhhhc-cCchhHHHHHHHHHHHHHHH
Q 045901            2 ASNGLMPNMILYLCREYNMETTAATNVLFIWTA-ATNFVPILGAFLADSC-MGRYPMIGFGCIISLLGMVL   70 (171)
Q Consensus         2 ~~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~-~~~i~~~~~G~laDr~-~Gr~~~i~~~~~l~~lg~~l   70 (171)
                      .+-|...++|-|+..++|.++..|..+.....+ +..++.++||++-.|+ +..|++....++...+..+.
T Consensus       407 ~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~  477 (735)
T KOG3626|consen  407 AITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLF  477 (735)
T ss_pred             HHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHH
Confidence            356788999999999999999999999966654 5566777899999886 23445555555555544443

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.54  E-value=3.4  Score=28.80  Aligned_cols=48  Identities=17%  Similarity=-0.035  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHH
Q 045901           26 TNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWF   73 (171)
Q Consensus        26 ~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~   73 (171)
                      +.-++.-.+...+.....||+-|||.|.++--+|..++...+...+.+
T Consensus        45 a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~AG~lnv   92 (116)
T COG5336          45 AFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNV   92 (116)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            333444445555556688999999999999888887777766655544

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.34  E-value=6.5  Score=34.31  Aligned_cols=99  Identities=10%  Similarity=0.079  Sum_probs=63.5

Q ss_pred             HHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCccchhHHHHHHHHH
Q 045901           29 LFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFG  108 (171)
Q Consensus        29 ~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  108 (171)
                      ..+-.....++.++++.+-|.. |.|..+.++...+..-.+-....                        +-+.++.+=.
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~~------------------------N~y~~yfssa  110 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLFP------------------------NSYYLYFSSA  110 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHhc------------------------chHHHHHHHH
Confidence            4455566777888999999997 99999999998887544333221                        2345677778


Q ss_pred             HHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 045901          109 LMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLS  159 (171)
Q Consensus       109 l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~  159 (171)
                      +.|+|.+.....--.+.++-..+       +++++..++.+...+.+.++|
T Consensus       111 llG~Gaallw~GqG~ylt~~st~-------~tie~Nisi~Wai~~~~li~G  154 (461)
T KOG3098|consen  111 LLGFGAALLWTGQGGYLTSNSTR-------ETIERNISIFWAIGQSSLIIG  154 (461)
T ss_pred             HhhhhHHheecccceehhhcCCh-------hhHHHHHHHHHHHHHHHHHhh
Confidence            99999988776666555553321       124444444434444444444

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=84.34  E-value=2.3  Score=36.99  Aligned_cols=52  Identities=13%  Similarity=0.021  Sum_probs=41.8

Q ss_pred             hhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHH
Q 045901           17 EYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGM   68 (171)
Q Consensus        17 ~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~   68 (171)
                      .-|+++..+|.+-....+..+++.++.|.++||.-.-|+++++......++.
T Consensus       295 ~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~  346 (480)
T KOG2563|consen  295 PSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGT  346 (480)
T ss_pred             cccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            4578888999999999999999999999999998444555666666666663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	171
2xut_A	524	Proton/peptide symporter family protein; transport	8e-21
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	2e-05

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score = 87.4 bits (217), Expect = 8e-21
 Identities = 35/173 (20%), Positives = 62/173 (35%), Gaps = 32/173 (18%)

Query: 5   GLMPNMILYLCREY------NMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIG 58
           G+   +  +L           +    A +V   +     F P+LG ++AD   G+Y  I 
Sbjct: 30  GMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89

Query: 59  FGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIR 118
           +  +I  +G   L                      +     +   Y+   L++LG G I+
Sbjct: 90  WLSLIYCVGHAFL----------------------AIFEHSVQGFYTGLFLIALGSGGIK 127

Query: 119 ASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG 171
                F  DQ D+ N +      Q  F  +Y +I  GS  ++  +  +  N G
Sbjct: 128 PLVSSFMGDQFDQSNKSL----AQKAFDMFYFTINFGSFFASLSMPLLLKNFG 176

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 28/172 (16%), Positives = 66/172 (38%), Gaps = 33/172 (19%)

Query: 5   GLMPNMILYLCREYN-----METTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGF 59
           G+   ++ Y+    +     +    A +++ I+ +       +G F+AD  +G  P + +
Sbjct: 31  GMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFW 90

Query: 60  GCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRA 119
           G ++ +LG ++L                       A       L+ +  L+ +G G ++ 
Sbjct: 91  GGVLIMLGHIVL-----------------------ALPFGASALFGSIILIIIGTGFLKP 127

Query: 120 SSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDNLG 171
           +         D+ +  ++AG     FS +   I  G+ ++   +   Q+  G
Sbjct: 128 NVSTLVGTLYDEHDRRRDAG-----FSIFVFGINLGAFIAPLIVGAAQEAAG 174

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	171
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.71
2xut_A	524	Proton/peptide symporter family protein; transport	99.65
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.62
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.54
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.53
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.5
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.29
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.2
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.08
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.01
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.85
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.65
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.63
2xut_A	524	Proton/peptide symporter family protein; transport	97.42

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.71  E-value=7.2e-17  Score=135.39  Aligned_cols=141  Identities=18%  Similarity=0.356  Sum_probs=125.5

Q ss_pred             ceeccHHHHHHHhhHh-----hCCChHHHHHHHHHHHHHHhhhhhhhHHHhhh-ccCchhHHHHHHHHHHHHHHHHHHhh
Q 045901            2 ASNGLMPNMILYLCRE-----YNMETTAATNVLFIWTAATNFVPILGAFLADS-CMGRYPMIGFGCIISLLGMVLLWFTA   75 (171)
Q Consensus         2 ~~~gv~~~l~~yl~~~-----lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr-~~Gr~~~i~~~~~l~~lg~~ll~~~~   75 (171)
                      ++|++...++.|++++     +|+++.+++.+.+.+.++..++.+++|+++|| + ||||++.++.++..++.+++.+++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~~~~~~~~~~~~~~~~~~~~  106 (491)
T 4aps_A           28 SYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPAVFWGGVLIMLGHIVLALPF  106 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHhh
Confidence            4678889999999998     99999999999999999999999999999999 7 999999999999999998776543


Q ss_pred             hcCCCCCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 045901           76 IFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAG  155 (171)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG  155 (171)
                                             +.+.+++++++.|+|.|...|...++++|.+++++.     .|++.+++++...++|
T Consensus       107 -----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~-----~r~~~~~~~~~~~~~g  158 (491)
T 4aps_A          107 -----------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR-----RRDAGFSIFVFGINLG  158 (491)
T ss_dssp             -----------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT-----HHHHHHHHHHHHHHHH
T ss_pred             -----------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc-----cceeeehHHHHHHHHH
Confidence                                   356788899999999999999999999999976432     4788999999999999


Q ss_pred             HHHHhHHHHhhccccC
Q 045901          156 SMLSATFIVYIQDNLG  171 (171)
Q Consensus       156 ~~i~~~~~~~i~~~~g  171 (171)
                      ..+++.+.+++.++.|
T Consensus       159 ~~~~~~~~~~l~~~~g  174 (491)
T 4aps_A          159 AFIAPLIVGAAQEAAG  174 (491)
T ss_dssp             HHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhhhh
Confidence            9999999999877543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.65  E-value=1.1e-15  Score=129.22  Aligned_cols=143  Identities=24%  Similarity=0.424  Sum_probs=124.0

Q ss_pred             ceeccHHHHHHHhhHhhC------CChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhh
Q 045901            2 ASNGLMPNMILYLCREYN------METTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTA   75 (171)
Q Consensus         2 ~~~gv~~~l~~yl~~~lg------~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~   75 (171)
                      ++|++...++.|+++++|      +++.+++.+.+.+.+...++.+++|+++||++||||++.++.++..++.+++.++.
T Consensus        27 ~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~  106 (524)
T 2xut_A           27 SFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE  106 (524)
T ss_dssp             HHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc
Confidence            467788899999999999      99999999999999999999999999999955999999999999999988776642


Q ss_pred             hcCCCCCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 045901           76 IFPQEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAG  155 (171)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG  155 (171)
                                            .+.+.+++++++.|++.|...|...++++|.+++++.    .++...+++++...++|
T Consensus       107 ----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r----~~~~~~~~~~~~~~~~g  160 (524)
T 2xut_A          107 ----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK----SLAQKAFDMFYFTINFG  160 (524)
T ss_dssp             ----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT----THHHHHHHHHHHHHHHH
T ss_pred             ----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch----HHHHHHHHHHHHHHHHH
Confidence                                  0356788889999999999999999999999976442    23567788899999999


Q ss_pred             HHHHhHHHHhhcccc
Q 045901          156 SMLSATFIVYIQDNL  170 (171)
Q Consensus       156 ~~i~~~~~~~i~~~~  170 (171)
                      .++++.+.+++.+..
T Consensus       161 ~~~g~~~~~~l~~~~  175 (524)
T 2xut_A          161 SFFASLSMPLLLKNF  175 (524)
T ss_dssp             HHHHHHTSTHHHHTS
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999988887644

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.62  E-value=5.4e-15  Score=121.78  Aligned_cols=134  Identities=13%  Similarity=0.131  Sum_probs=116.0

Q ss_pred             cHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 045901            6 LMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVC   85 (171)
Q Consensus         6 v~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~   85 (171)
                      +...+.+++.+++|.++.+.+.+.+.+.++..++.++.|+++||+ ||||.+.++.++..++.+++......        
T Consensus        44 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~--------  114 (438)
T 3o7q_A           44 LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAALFWPAAEI--------  114 (438)
T ss_dssp             HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHT--------
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHHHHHHHHHHhcccc--------
Confidence            334455667889999999999999999999999999999999998 99999999999999999888432211        


Q ss_pred             cccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 045901           86 DQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVY  165 (171)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~  165 (171)
                                  .+.+.+++++++.|+|.|...+...++++|.++++       +|++..+++....++|.++++.+.++
T Consensus       115 ------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~~~~~  175 (438)
T 3o7q_A          115 ------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES-------SGHFRLNLAQTFNSFGAIIAVVFGQS  175 (438)
T ss_dssp             ------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST-------THHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred             ------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch-------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        15778899999999999999999999999998643       27888999999999999999998888


Q ss_pred             hc
Q 045901          166 IQ  167 (171)
Q Consensus       166 i~  167 (171)
                      +.
T Consensus       176 l~  177 (438)
T 3o7q_A          176 LI  177 (438)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.54  E-value=2.1e-14  Score=118.47  Aligned_cols=128  Identities=12%  Similarity=0.063  Sum_probs=111.7

Q ss_pred             HHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHH----hhhcCCCCCCccc
Q 045901           11 ILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWF----TAIFPQEKPPVCD   86 (171)
Q Consensus        11 ~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~----~~~~~~~~~~~~~   86 (171)
                      .+++.+++ .++.+.+.+.+.+.+...++.+++|+++||+ ||||.+.++.++..++.+++.+    +.           
T Consensus        51 ~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~-----------  117 (451)
T 1pw4_A           51 MPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWATS-----------  117 (451)
T ss_dssp             HHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHHS-----------
T ss_pred             HHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhccc-----------
Confidence            34445577 9999999999999999999999999999998 9999999999999999998877    43           


Q ss_pred             ccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901           87 QMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI  166 (171)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i  166 (171)
                                  +.+.+++++++.|++.|...+...++++|.++++       +|++.+++.....++|.++++.+.+++
T Consensus       118 ------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~~~~~l  178 (451)
T 1pw4_A          118 ------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK-------ERGGIVSVWNCAHNVGGGIPPLLFLLG  178 (451)
T ss_dssp             ------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT-------HHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             ------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCch-------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        3556888899999999999999999999998632       378999999999999999999988886


Q ss_pred             cccc
Q 045901          167 QDNL  170 (171)
Q Consensus       167 ~~~~  170 (171)
                      .+..
T Consensus       179 ~~~~  182 (451)
T 1pw4_A          179 MAWF  182 (451)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            5543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.53  E-value=2e-14  Score=116.55  Aligned_cols=127  Identities=18%  Similarity=0.225  Sum_probs=112.7

Q ss_pred             HHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccC
Q 045901           12 LYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSG   91 (171)
Q Consensus        12 ~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~   91 (171)
                      +.+.+++|.++.+.+.+.+.+.....++.++.|+++||+ ||||.+.++.++..++.+++.+++                
T Consensus        24 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~----------------   86 (375)
T 2gfp_A           24 ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLVAVTTS----------------   86 (375)
T ss_dssp             HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHHHHHHH----------------
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHHhc----------------
Confidence            334568999999999999999999999999999999998 999999999999999998887764                


Q ss_pred             CCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 045901           92 CESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQDN  169 (171)
Q Consensus        92 ~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~~  169 (171)
                             +.+.+++.+++.|++.+...+...+++.|.+++++       |++.++++....++|..+++.+.+++.++
T Consensus        87 -------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~  150 (375)
T 2gfp_A           87 -------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ-------LRHANSLLNMGILVSPLLAPLIGGLLDTM  150 (375)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-------CCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred             -------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH-------HHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence                   56778899999999999999999999999986532       57788888899999999999999888764

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.50  E-value=1.5e-13  Score=115.06  Aligned_cols=133  Identities=12%  Similarity=0.030  Sum_probs=100.8

Q ss_pred             ChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCccchhH
Q 045901           21 ETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATASQL  100 (171)
Q Consensus        21 s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (171)
                      ++.+.+.+++.+.++..++++++|+++||+ ||||++.++.+++.++.++++++.........    .. .-......+.
T Consensus        53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~----~~-~~~~~~a~~~  126 (491)
T 4gc0_A           53 ANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP----DN-TVPVYLAGYV  126 (491)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS----SS-SCCGGGGGCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc----hh-HHHHHHhhhH
Confidence            345677888999999999999999999998 99999999999999999988764311000000    00 0000012367


Q ss_pred             HHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901          101 MLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI  166 (171)
Q Consensus       101 ~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i  166 (171)
                      +.++++|++.|+|.|+..+..+.+++|..+++       +|++...++.....+|.+++..+...+
T Consensus       127 ~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~-------~rg~~~~~~~~~~~~g~~~~~~~~~~~  185 (491)
T 4gc0_A          127 PEFVIYRIIGGIGVGLASMLSPMYIAELAPAH-------IRGKLVSFNQFAIIFGQLLVYCVNYFI  185 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGG-------GHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH-------hhhhhHHhhhhhhhhhhhhhhhcchhh
Confidence            88999999999999999999999999987532       378888888888888888887765544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.29  E-value=2.1e-11  Score=100.36  Aligned_cols=141  Identities=13%  Similarity=0.112  Sum_probs=113.1

Q ss_pred             eeccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhc-cCchhHHHHHHHHHH-HHHHHHHHhhhcCCC
Q 045901            3 SNGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSC-MGRYPMIGFGCIISL-LGMVLLWFTAIFPQE   80 (171)
Q Consensus         3 ~~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~-~Gr~~~i~~~~~l~~-lg~~ll~~~~~~~~~   80 (171)
                      ++++..+++.|+++.+|+++.+++.+.....+...++.++.|+++||+ .|||+.+.++.++.. ++.+++.+..     
T Consensus       268 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  342 (451)
T 1pw4_A          268 RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP-----  342 (451)
T ss_dssp             HHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCC-----
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhc-----
Confidence            456677889999988999999999999999999999999999999993 189988888877766 5544332211     


Q ss_pred             CCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHH-HHHHH
Q 045901           81 KPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAA-GSMLS  159 (171)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~ni-G~~i~  159 (171)
                                      ..+.+.+.+..++.+++.+...+....+..|.++++       .|++.++++....++ |..++
T Consensus       343 ----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~g~~~~  399 (451)
T 1pw4_A          343 ----------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK-------AAGTAAGFTGLFGYLGGSVAA  399 (451)
T ss_dssp             ----------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTT-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchh-------hhhhHHHHHHHHHHHHHHHHH
Confidence                            113455667777888988888888889999988642       379999999999999 99999


Q ss_pred             hHHHHhhccccC
Q 045901          160 ATFIVYIQDNLG  171 (171)
Q Consensus       160 ~~~~~~i~~~~g  171 (171)
                      +.+.+++.++.|
T Consensus       400 ~~~~g~l~~~~g  411 (451)
T 1pw4_A          400 SAIVGYTVDFFG  411 (451)
T ss_dssp             HHHHHHHHHSSC
T ss_pred             HHHHHHHHHhcC
Confidence            999999887654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.20  E-value=1.4e-10  Score=95.21  Aligned_cols=134  Identities=14%  Similarity=0.086  Sum_probs=105.4

Q ss_pred             eccHHHHHHH-hhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 045901            4 NGLMPNMILY-LCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKP   82 (171)
Q Consensus         4 ~gv~~~l~~y-l~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~   82 (171)
                      +++..+++.| +++.+|+++.+++.+...+.+...++.+++|+++||+ ||||.+.++.++..++.+++.+..       
T Consensus       275 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~-------  346 (438)
T 3o7q_A          275 TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLISAFAG-------  346 (438)
T ss_dssp             HHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred             HHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHcC-------
Confidence            4556788999 8888899999999999999999999999999999997 999999999999988877665532       


Q ss_pred             CcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHH
Q 045901           83 PVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATF  162 (171)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~  162 (171)
                                      +.. ..+...+.+++.+...|...++..|.++++        ++....+.. ..++|..+++.+
T Consensus       347 ----------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~-~~~~g~~~~~~~  400 (438)
T 3o7q_A          347 ----------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD--------TKYGSSFIV-MTIIGGGIVTPV  400 (438)
T ss_dssp             ----------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG--------HHHHHHHHH-HTTHHHHHHHHH
T ss_pred             ----------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc--------ccchhhHHH-HHHHHHHHHHHH
Confidence                            222 334457888899999999998888877532        233334433 456899999999


Q ss_pred             HHhhccccC
Q 045901          163 IVYIQDNLG  171 (171)
Q Consensus       163 ~~~i~~~~g  171 (171)
                      .+++.|..|
T Consensus       401 ~g~l~~~~g  409 (438)
T 3o7q_A          401 MGFVSDAAG  409 (438)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999887643

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.08  E-value=1e-11  Score=102.80  Aligned_cols=139  Identities=10%  Similarity=-0.012  Sum_probs=87.9

Q ss_pred             ccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 045901            5 GLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPV   84 (171)
Q Consensus         5 gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~   84 (171)
                      .+.++++.|+++++|+++.+++.+.+.+.+...++.+++|+++||+ ||||.+.++.++..++...+......+.     
T Consensus        25 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~-----   98 (417)
T 2cfq_A           25 AYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVMFAPFFIFIFGPL-----   98 (417)
T ss_dssp             HHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSCHHHHHHHTHHHH-----
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            3457899999999999999999999999999999999999999998 9999999998877654321211010000     


Q ss_pred             ccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045901           85 CDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIV  164 (171)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~  164 (171)
                                    -...+..++.+.+++.|...+...+...+..++ .+    ++++..++......++|..+++.+.+
T Consensus        99 --------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~----~~~~~~~g~~~~~~~~g~~~~~~l~~  159 (417)
T 2cfq_A           99 --------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK-VS----RRSNFEFGRARMFGCVGWALGASIVG  159 (417)
T ss_dssp             --------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHH-HH----HHHTCCHHHHSSSTTTHHHHHHHHHH
T ss_pred             --------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-hh----hhcccchHHHHHHHHHHHHHHHHHHH
Confidence                          000012233344444444444444444333211 11    12344455555566788888888777


Q ss_pred             hhcc
Q 045901          165 YIQD  168 (171)
Q Consensus       165 ~i~~  168 (171)
                      ++.+
T Consensus       160 ~l~~  163 (417)
T 2cfq_A          160 IMFT  163 (417)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.01  E-value=3.2e-10  Score=93.81  Aligned_cols=132  Identities=5%  Similarity=0.020  Sum_probs=93.3

Q ss_pred             HHHHHHhhHhhCC---ChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 045901            8 PNMILYLCREYNM---ETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPV   84 (171)
Q Consensus         8 ~~l~~yl~~~lg~---s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~   84 (171)
                      ..++.|+++.++.   +..+.+.......+...++.+++|+++||+ ||||.+.++.++..++.+++.+..         
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~~~---------  310 (417)
T 2cfq_A          241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT---------  310 (417)
T ss_dssp             HHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTTCC---------
T ss_pred             HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence            3467788766553   344556666666677788899999999998 999999998888877755443221         


Q ss_pred             ccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHH-HHHHHHHHHHHHhHHH
Q 045901           85 CDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSW-YYVSIAAGSMLSATFI  163 (171)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~-~y~~~niG~~i~~~~~  163 (171)
                                    +.+.+.+...+.+++.+...+....+..|.+++       +.|++.+++ +....++|..+++.+.
T Consensus       311 --------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~lg~~~gp~l~  369 (417)
T 2cfq_A          311 --------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-------RFSATIYLVCFCFFKQLAMIFMSVLA  369 (417)
T ss_dssp             --------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH-------HHHHHHHHHHHTTTHHHHHHHHTHHH
T ss_pred             --------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHhHHHHHhhhhH
Confidence                          233444555566677666667777888888753       236777777 4667779999999999


Q ss_pred             Hhhcccc
Q 045901          164 VYIQDNL  170 (171)
Q Consensus       164 ~~i~~~~  170 (171)
                      +++.++.
T Consensus       370 G~l~~~~  376 (417)
T 2cfq_A          370 GNMYESI  376 (417)
T ss_dssp             HTHHHHS
T ss_pred             HHHHHhc
Confidence            9887643

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.85  E-value=3.4e-09  Score=88.56  Aligned_cols=143  Identities=13%  Similarity=0.099  Sum_probs=107.3

Q ss_pred             eccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHH-----HHHHHHHHHHHHHHHhhhcC
Q 045901            4 NGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIG-----FGCIISLLGMVLLWFTAIFP   78 (171)
Q Consensus         4 ~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~-----~~~~l~~lg~~ll~~~~~~~   78 (171)
                      ......++.|.++.++.+..+++.+.........++.++.|+++||+ |||+...     ++.++..++.+++.......
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (491)
T 4aps_A          300 EQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMFAGLSFLLMAIPGALY  378 (491)
T ss_dssp             GGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHHHHHHHTTTHHHHHHC
T ss_pred             hhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34556778899888888877778888888888899999999999998 9987655     77777777776665543110


Q ss_pred             CCCCCcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 045901           79 QEKPPVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSML  158 (171)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i  158 (171)
                      ..              ....+.+.+.+..++.++|.+...+...++..|..+++.       |++..+++....++|..+
T Consensus       379 ~~--------------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~-------~g~~~g~~~~~~~~g~~i  437 (491)
T 4aps_A          379 GT--------------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF-------NSQMMSMWFLSSSVGSAL  437 (491)
T ss_dssp             CC--------------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC-------SSSSTHHHHHHHHHHHHH
T ss_pred             CC--------------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH-------HHHHHHHHHHHHHHHHHH
Confidence            00              001134556677788999999999999999999987543       577888888999999999


Q ss_pred             HhHHHHhhcc
Q 045901          159 SATFIVYIQD  168 (171)
Q Consensus       159 ~~~~~~~i~~  168 (171)
                      ++.+.+++.+
T Consensus       438 ~~~~~~~~~~  447 (491)
T 4aps_A          438 NAQLVTLYNA  447 (491)
T ss_dssp             HHHHGGGGGG
T ss_pred             HHHHHHHHhc
Confidence            9999888876

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.65  E-value=1.2e-06  Score=72.81  Aligned_cols=130  Identities=12%  Similarity=0.034  Sum_probs=91.3

Q ss_pred             HHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccc
Q 045901           11 ILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRS   90 (171)
Q Consensus        11 ~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~   90 (171)
                      .+++.+..+.+................++.++++++.||+ |||+.++.+.....++.+.+.......            
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l~~~~~~~------------  366 (491)
T 4gc0_A          300 APEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQ------------  366 (491)
T ss_dssp             HHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHHHHHHHTT------------
T ss_pred             chHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHHHHHHhcc------------
Confidence            3445557788888888888888888999999999999998 999999999999888877665443110            


Q ss_pred             CCCCccchhHHHHHHHHH--HHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 045901           91 GCESATASQLMLLYSAFG--LMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQD  168 (171)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~--l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~  168 (171)
                            . ......+...  ..+.+. +..|....+.+|.+|.+       .|++..++.....+++.++++.+.+++.+
T Consensus       367 ------~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~-------~R~~~~g~~~~~~~~~~~i~~~~~p~l~~  431 (491)
T 4gc0_A          367 ------A-PGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNA-------IRGKALAIAVAAQWLANYFVSWTFPMMDK  431 (491)
T ss_dssp             ------C-CHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTT-------THHHHHHHHHHHHHHHHHHHHTHHHHHCH
T ss_pred             ------c-chHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  0 1122222222  222232 23466678889999753       37888888888888888888777766543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.63  E-value=2e-09  Score=86.92  Aligned_cols=136  Identities=9%  Similarity=0.002  Sum_probs=99.2

Q ss_pred             eccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHH-HHHHHHHHHHhhhcCCCCC
Q 045901            4 NGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCII-SLLGMVLLWFTAIFPQEKP   82 (171)
Q Consensus         4 ~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l-~~lg~~ll~~~~~~~~~~~   82 (171)
                      ++...+++.|+++++|+++.+++.+......+..++.++.|+++||+ ||+  +..+..+ ...+..++.....      
T Consensus       216 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~~~~~~~~~~~~------  286 (375)
T 2gfp_A          216 AAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLLAGLLMWIPDWF------  286 (375)
T ss_dssp             HHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHHTSSSSSHHHHH------
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHhhh------
Confidence            34455667788888999999999999999999999999999999997 772  3333333 3333222111110      


Q ss_pred             CcccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHH
Q 045901           83 PVCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATF  162 (171)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~  162 (171)
                                   ...+.+.+.+...+.+++.+...+...++..|..+ +       +|++..+......++|..+++.+
T Consensus       287 -------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~-------~~g~~~g~~~~~~~~g~~~~~~~  345 (375)
T 2gfp_A          287 -------------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-F-------LAGTAGALVGGLQNIGSGVLASL  345 (375)
T ss_dssp             -------------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-H-------HHHHHHHHHHHHHHHHHHCCSTT
T ss_pred             -------------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-c-------ccchHHHHHHHHHHHHHHHHHHH
Confidence                         01134556677788999999999999999999763 1       37889999999999999999888


Q ss_pred             HHhhccc
Q 045901          163 IVYIQDN  169 (171)
Q Consensus       163 ~~~i~~~  169 (171)
                      .+++.++
T Consensus       346 ~g~l~~~  352 (375)
T 2gfp_A          346 SAMLPQT  352 (375)
T ss_dssp             CTHHHHH
T ss_pred             HHHHhcC
Confidence            8877653

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.42  E-value=5.8e-05  Score=63.28  Aligned_cols=122  Identities=15%  Similarity=0.223  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHhhhhhhhHHHh----hhccCc----hhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCcc
Q 045901           25 ATNVLFIWTAATNFVPILGAFLA----DSCMGR----YPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESAT   96 (171)
Q Consensus        25 a~~~~~~~~~~~~i~~~~~G~la----Dr~~Gr----~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~   96 (171)
                      .+.+.........+..++.+++.    ||. ||    ++.+.++.++..++.+++........              ...
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------------~~~  401 (524)
T 2xut_A          337 PAMMQALNPLLVMLLIPFNNFVLYPAIERM-GVKLTALRKMGAGIAITGLSWIVVGTIQLMMD--------------GGS  401 (524)
T ss_dssp             HHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTTT--------------TTC
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhhHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCC
Confidence            34443333333444444444443    443 33    35677777777777655443210000              000


Q ss_pred             chhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 045901           97 ASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYIQD  168 (171)
Q Consensus        97 ~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i~~  168 (171)
                      ..+.+.+.+..++.+++.+...+....+..|..+++.       |++..++++...++|..+++.+.+++.+
T Consensus       402 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~-------~g~~~g~~~~~~~~g~~~g~~~~g~~~~  466 (524)
T 2xut_A          402 ALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM-------KGTIMSFWTLSVTVGNLWVLLANVSVKS  466 (524)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC-------CTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            1134556677788999999999999999999987532       5788888888999999999999988876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	171
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.53
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.31
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.07
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.97

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=1.4e-14  Score=116.77  Aligned_cols=134  Identities=12%  Similarity=0.058  Sum_probs=112.6

Q ss_pred             HHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 045901            7 MPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCD   86 (171)
Q Consensus         7 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~   86 (171)
                      .+.+.++++ ++|+|+.+.+.+.+.+.++..++.+++|+++||+ ||||.+.++.++..++.+++.++....        
T Consensus        44 ~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~--------  113 (447)
T d1pw4a_          44 FALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT--------  113 (447)
T ss_dssp             HHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHH--------
T ss_pred             HHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhh--------
Confidence            345556776 6899999999999999999999999999999998 999999999999999998877653211        


Q ss_pred             ccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 045901           87 QMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAAGSMLSATFIVYI  166 (171)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~niG~~i~~~~~~~i  166 (171)
                                 .+.+.+++.+++.+++.|...+...++++|.++++       +|++.++++....++|.++++.+.+.+
T Consensus       114 -----------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~i~~~~~~~~  175 (447)
T d1pw4a_         114 -----------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK-------ERGGIVSVWNCAHNVGGGIPPLLFLLG  175 (447)
T ss_dssp             -----------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT-------HHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             -----------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhh-------cccccccccccccchhhhhhhhhhhhH
Confidence                       13567888899999999999999999999988642       378899999999999999888777665


Q ss_pred             cc
Q 045901          167 QD  168 (171)
Q Consensus       167 ~~  168 (171)
                      .+
T Consensus       176 ~~  177 (447)
T d1pw4a_         176 MA  177 (447)
T ss_dssp             HH
T ss_pred             hh
Confidence            43

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=1.9e-12  Score=101.38  Aligned_cols=69  Identities=10%  Similarity=0.074  Sum_probs=63.0

Q ss_pred             cHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhh
Q 045901            6 LMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTA   75 (171)
Q Consensus         6 v~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~   75 (171)
                      ..+.++.|+++++|+|+.+.+.+.+++.+...++.++.|+++||+ ||||.+.++..+..++..++....
T Consensus        26 ~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~~~~~~~~~~   94 (417)
T d1pv7a_          26 YFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVMFAPFFIFI   94 (417)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHHTHHHHHHHT
T ss_pred             HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHhh
Confidence            456788999999999999999999999999999999999999998 999999999999998887776654

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=1e-09  Score=87.55  Aligned_cols=142  Identities=13%  Similarity=0.032  Sum_probs=106.1

Q ss_pred             eccHHHHHHHhhHhhCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 045901            4 NGLMPNMILYLCREYNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPP   83 (171)
Q Consensus         4 ~gv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~   83 (171)
                      +++..+++.|+.+..+++..+++...........++.+++|+++||+ +|++..........+....+......+     
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  339 (447)
T d1pw4a_         266 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTLVTIATIVYWMNP-----  339 (447)
T ss_dssp             HHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHHHHHHHHHHTTSCC-----
T ss_pred             hcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHHHHHHHHHHHHhcc-----
Confidence            45667788999999999999999999999999999999999999998 887765555444443333222211110     


Q ss_pred             cccccccCCCCccchhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHHHHHHH-HHHHHhHH
Q 045901           84 VCDQMRSGCESATASQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYYVSIAA-GSMLSATF  162 (171)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y~~~ni-G~~i~~~~  162 (171)
                                   ..+.+...+..++.+++.++..+....+..|.++++       .++++.++.+...++ |.++++.+
T Consensus       340 -------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~-------~~g~~~g~~~~~~~~~g~~~~~~~  399 (447)
T d1pw4a_         340 -------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK-------AAGTAAGFTGLFGYLGGSVAASAI  399 (447)
T ss_dssp             -------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTT-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         123455666777888888888888888999987532       378888888887777 56778888


Q ss_pred             HHhhccccC
Q 045901          163 IVYIQDNLG  171 (171)
Q Consensus       163 ~~~i~~~~g  171 (171)
                      .+++.|+.|
T Consensus       400 ~g~~~~~~g  408 (447)
T d1pw4a_         400 VGYTVDFFG  408 (447)
T ss_dssp             HHHHHHSSC
T ss_pred             HHHHHHHhC
Confidence            999887654

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=4.4e-10  Score=87.50  Aligned_cols=123  Identities=7%  Similarity=0.015  Sum_probs=99.8

Q ss_pred             hCCChHHHHHHHHHHHHHHhhhhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccCCCCccc
Q 045901           18 YNMETTAATNVLFIWTAATNFVPILGAFLADSCMGRYPMIGFGCIISLLGMVLLWFTAIFPQEKPPVCDQMRSGCESATA   97 (171)
Q Consensus        18 lg~s~~~a~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~i~~~~~l~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (171)
                      .+.+....+.......+...++..+.+++.||+ |||+.+.++.++..++.+++.+..                      
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~----------------------  310 (417)
T d1pv7a_         254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT----------------------  310 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC----------------------
T ss_pred             cccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc----------------------
Confidence            455666777778888889999999999999998 999999999999988877665432                      


Q ss_pred             hhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCCcchhhHHHHHHHHHH-HHHHHHHHHHhHHHHhhccccC
Q 045901           98 SQLMLLYSAFGLMSLGGGSIRASSLVFGADQLDKGNGAKNAGALQSYFSWYY-VSIAAGSMLSATFIVYIQDNLG  171 (171)
Q Consensus        98 ~~~~~~~~~l~l~g~g~G~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~y-~~~niG~~i~~~~~~~i~~~~g  171 (171)
                       +.+.+.+...+.+++.+...+...+++.|.++++       .|++.+++.+ ....+|..+++.+.+++.|+.|
T Consensus       311 -~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g  377 (417)
T d1pv7a_         311 -SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR-------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG  377 (417)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGG-------GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC
T ss_pred             -ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence             3566677778899999999999999999998642       3677888754 4566899999999999988764