Citrus Sinensis ID: 045913

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
MASFLRSFGFSYLLVVLILAIAEKSNASGYTRPIFRSGAWQLAHATFYGDQSASETMGGACGYGNLRINGYGTDTAALSSMLFNGGYACGTCYQIKCHDSPHCYTYVSFTTVTATNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIADWKAGIIPVIYRRVPCVKAGGLRFAFQGNGYWLLVYVLNVAGGGDIANMWVKGTRTGWISMSHNWGASYQAFATLGGQALSFKLTSYSSKETIFAYNVAPPNWNVGLTYSSDVNFH
cccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccEEEEEEEcccccccccccccccccccccccccccHHHHHHHHHccccEEEEEEEEcccEEccccEEEEccccEEEEEEEEEEcccccEEEEEEEcccccEEEcccccccccEEccccccccEEEEEEEccccEEEEEccccccccccccEEEcccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEccccccccccccccccccccccccccHHHHHHHHHccccccccEEEEEEcccccccccccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEcccccccEEEEEEcccccEEEEEEEEccccccEEEEEEEccccccccccccccccccccccEcccEEEEEEEEcccccEEEEcccccccccEcEEEccccccc
MASFLRSFGFSYLLVVLILAIAEKsnasgytrpifrsgawQLAHatfygdqsasetmggacgygnlringygtDTAALSSMLfnggyacgtcyqikchdsphcytyvSFTTVTatnlcppnwsqdsnnggwcnpprahfdmskpafMKIADwkagiipviyrrvpcvkagglrfafqGNGYWLLVYVLNVagggdianmWVKGTRTGWISMSHNWGASYQAFATLGGQALSFkltsysskeTIFAynvappnwnvgltyssdvnfh
MASFLRSFGFSYLLVVLILAIAEKSNASGYTRPIFRSGAWQLAHATFYGDQSASETMGGACGYGNLRINGYGTDTAALSSMLFNGGYACGTCYQIKCHDSPHCYTYVSFTTVTATNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIADWKAGIIPVIYRRVPCVKAGGLRFAFQGNGYWLLVYVLNVAGGGDIANMWVKGTRTGWISMSHNWGASYQAFATLGGQALSFKLTSYSSKETIFaynvappnwNVGLTyssdvnfh
MASFLRSFGFSYLLVVLILAIAEKSNASGYTRPIFRSGAWQLAHATFYGDQSASETMGGACGYGNLRINGYGTDTAALSSMLFNGGYACGTCYQIKCHDSPHCYTYVSFTTVTATNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIADWKAGIIPVIYRRVPCVKAGGLRFAFQGNGYWLLVYVLNVAGGGDIANMWVKGTRTGWISMSHNWGASYQAFATLGGQALSFKLTSYSSKETIFAYNVAPPNWNVGLTYSSDVNFH
***FLRSFGFSYLLVVLILAIAEKSNASGYTRPIFRSGAWQLAHATFYGDQSASETMGGACGYGNLRINGYGTDTAALSSMLFNGGYACGTCYQIKCHDSPHCYTYVSFTTVTATNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIADWKAGIIPVIYRRVPCVKAGGLRFAFQGNGYWLLVYVLNVAGGGDIANMWVKGTRTGWISMSHNWGASYQAFATLGGQALSFKLTSYSSKETIFAYNVAPPNWNVGLTYS******
********GFSYLLVVLILAIAEKSNASGYTRPIFRSGAWQLAHATFYGDQSASETMGGACGYGNLRINGYGTDTAALSSMLFNGGYACGTCYQIKCHDSPHCYTYVSFTTVTATNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIADWKAGIIPVIYRRVPCVKAGGLRFAFQGNGYWLLVYVLNVAGGGDIANMWVKGTRTGWISMSHNWGASYQAFATLGGQALSFKLTSYSSKETIFAYNVAPPNWNVGLTYSSDVNFH
MASFLRSFGFSYLLVVLILAIAEKSNASGYTRPIFRSGAWQLAHATFYGDQSASETMGGACGYGNLRINGYGTDTAALSSMLFNGGYACGTCYQIKCHDSPHCYTYVSFTTVTATNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIADWKAGIIPVIYRRVPCVKAGGLRFAFQGNGYWLLVYVLNVAGGGDIANMWVKGTRTGWISMSHNWGASYQAFATLGGQALSFKLTSYSSKETIFAYNVAPPNWNVGLTYSSDVNFH
*ASFLRSFGFSYLLVVLILAIAEKSNASGYTRPIFRSGAWQLAHATFYGDQSASETMGGACGYGNLRINGYGTDTAALSSMLFNGGYACGTCYQIKCHDSPHCYTYVSFTTVTATNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIADWKAGIIPVIYRRVPCVKAGGLRFAFQGNGYWLLVYVLNVAGGGDIANMWVKGTRTGWISMSHNWGASYQAFATLGGQALSFKLTSYSSKETIFAYNVAPPNWNVGLTYSSDVNF*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MASFLRSFGFSYLLVVLILAIAEKSNASGYTRPIFRSGAWQLAHATFYGDQSASETMGGACGYGNLRINGYGTDTAALSSMLFNGGYACGTCYQIKCHDSPHCYTYVSFTTVTATNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIADWKAGIIPVIYRRVPCVKAGGLRFAFQGNGYWLLVYVLNVAGGGDIANMWVKGTRTGWISMSHNWGASYQAFATLGGQALSFKLTSYSSKETIFAYNVAPPNWNVGLTYSSDVNFH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query266 2.2.26 [Sep-21-2011]
Q9LN94262 Expansin-A7 OS=Arabidopsi yes no 0.954 0.969 0.653 3e-96
Q8W2X8266 Putative expansin-A30 OS= yes no 0.868 0.868 0.683 2e-93
Q9LQ07257 Expansin-A18 OS=Arabidops no no 0.932 0.964 0.629 3e-92
Q9M2S9260 Expansin-A16 OS=Arabidops no no 0.921 0.942 0.536 1e-72
O48818257 Expansin-A4 OS=Arabidopsi no no 0.921 0.953 0.538 2e-72
Q0DHB7246 Expansin-A4 OS=Oryza sati yes no 0.890 0.963 0.540 9e-71
A2Y5R6246 Expansin-A4 OS=Oryza sati N/A no 0.890 0.963 0.540 9e-71
O80932262 Expansin-A3 OS=Arabidopsi no no 0.849 0.862 0.552 9e-69
Q9FMA0255 Expansin-A14 OS=Arabidops no no 0.928 0.968 0.515 5e-68
Q9ZSI1255 Putative expansin-A17 OS= no no 0.857 0.894 0.538 5e-68
>sp|Q9LN94|EXPA7_ARATH Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=3 SV=1 Back     alignment and function desciption
 Score =  351 bits (900), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 170/260 (65%), Positives = 204/260 (78%), Gaps = 6/260 (2%)

Query: 7   SFGFSYLLVVLILAIAEKSNASGYTRPIFRSGAWQLAHATFYGDQSASETMGGACGYGNL 66
           SF   + +V ++ AI+ +  A GY RP    G W+ AHATFYGD++  ETMGGACGYGNL
Sbjct: 9   SFNKFFSIVFVVFAISGEFVA-GYYRP----GPWRYAHATFYGDETGGETMGGACGYGNL 63

Query: 67  RINGYGTDTAALSSMLFNGGYACGTCYQIKCHDSPHCYTYVSFTTVTATNLCPPNWSQDS 126
             +GYG  TAALS+ LFN GY CG C+QI C  SPHCY+  S T VTATNLCPPNW QDS
Sbjct: 64  FNSGYGLSTAALSTTLFNDGYGCGQCFQITCSKSPHCYSGKS-TVVTATNLCPPNWYQDS 122

Query: 127 NNGGWCNPPRAHFDMSKPAFMKIADWKAGIIPVIYRRVPCVKAGGLRFAFQGNGYWLLVY 186
           N GGWCNPPR HFDM+KPAFMK+A W+AGIIPV YRRVPC ++GG+RF FQGN YWLL++
Sbjct: 123 NAGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVPCQRSGGMRFQFQGNSYWLLIF 182

Query: 187 VLNVAGGGDIANMWVKGTRTGWISMSHNWGASYQAFATLGGQALSFKLTSYSSKETIFAY 246
           V+NV G GDI +M VKG+RT WISMSHNWGASYQAF++L GQ+LSF++TSY++ ETI+A+
Sbjct: 183 VMNVGGAGDIKSMAVKGSRTNWISMSHNWGASYQAFSSLYGQSLSFRVTSYTTGETIYAW 242

Query: 247 NVAPPNWNVGLTYSSDVNFH 266
           NVAP NW+ G TY S  NF 
Sbjct: 243 NVAPANWSGGKTYKSTANFR 262
Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8W2X8|EXP30_ORYSJ Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1 Back     alignment and function description
>sp|Q9LQ07|EXP18_ARATH Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1 Back     alignment and function description
>sp|Q9M2S9|EXP16_ARATH Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1 Back     alignment and function description
>sp|O48818|EXPA4_ARATH Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1 Back     alignment and function description
>sp|Q0DHB7|EXPA4_ORYSJ Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1 Back     alignment and function description
>sp|A2Y5R6|EXPA4_ORYSI Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1 Back     alignment and function description
>sp|O80932|EXPA3_ARATH Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1 Back     alignment and function description
>sp|Q9FMA0|EXP14_ARATH Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZSI1|EXP17_ARATH Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query266
255537221266 Alpha-expansin 7 precursor, putative [Ri 1.0 1.0 0.759 1e-118
356495641260 PREDICTED: expansin-A7-like [Glycine max 0.977 1.0 0.733 1e-112
225426726264 PREDICTED: expansin-A7 [Vitis vinifera] 0.992 1.0 0.736 1e-112
357481803263 Expansin-A7 [Medicago truncatula] gi|355 0.988 1.0 0.714 1e-110
356565307265 PREDICTED: putative expansin-A30-like [G 0.962 0.966 0.745 1e-110
388491068263 unknown [Medicago truncatula] 0.988 1.0 0.706 1e-109
356540476242 PREDICTED: expansin-A7-like [Glycine max 0.909 1.0 0.768 1e-109
388521879262 unknown [Medicago truncatula] 0.947 0.961 0.725 1e-106
449460463264 PREDICTED: expansin-A7-like [Cucumis sat 0.962 0.969 0.691 1e-105
449452508260 PREDICTED: expansin-A7-like [Cucumis sat 0.947 0.969 0.704 1e-105
>gi|255537221|ref|XP_002509677.1| Alpha-expansin 7 precursor, putative [Ricinus communis] gi|223549576|gb|EEF51064.1| Alpha-expansin 7 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/266 (75%), Positives = 226/266 (84%)

Query: 1   MASFLRSFGFSYLLVVLILAIAEKSNASGYTRPIFRSGAWQLAHATFYGDQSASETMGGA 60
           MA F  S+  S+ LV  I A+   S A GY  P+FR   W LAHATFYGD++AS TMGGA
Sbjct: 1   MAKFFHSWSLSFFLVASISALIGTSMAVGYGTPVFRPSQWGLAHATFYGDETASATMGGA 60

Query: 61  CGYGNLRINGYGTDTAALSSMLFNGGYACGTCYQIKCHDSPHCYTYVSFTTVTATNLCPP 120
           CGYGNL  NGYGTDTAALS+ LFN GYACGTCYQIKC  SP C+  V FTTVTATN+CPP
Sbjct: 61  CGYGNLFQNGYGTDTAALSTALFNDGYACGTCYQIKCVQSPWCFNDVPFTTVTATNICPP 120

Query: 121 NWSQDSNNGGWCNPPRAHFDMSKPAFMKIADWKAGIIPVIYRRVPCVKAGGLRFAFQGNG 180
           NWSQDSN+GGWCNPPR HFDMSKPAFMKIA WKAGI+PV+YRRVPCV++ GLRF+FQGNG
Sbjct: 121 NWSQDSNDGGWCNPPRVHFDMSKPAFMKIAQWKAGIVPVMYRRVPCVRSDGLRFSFQGNG 180

Query: 181 YWLLVYVLNVAGGGDIANMWVKGTRTGWISMSHNWGASYQAFATLGGQALSFKLTSYSSK 240
           YWLLVYV+NV GGGDIANMWVKG++TGWISMSHNWGASYQAFATL GQALSFKLTSY++K
Sbjct: 181 YWLLVYVMNVGGGGDIANMWVKGSKTGWISMSHNWGASYQAFATLEGQALSFKLTSYTTK 240

Query: 241 ETIFAYNVAPPNWNVGLTYSSDVNFH 266
           ET+ A NVAP NWNVG+TY ++VNFH
Sbjct: 241 ETVLALNVAPENWNVGMTYKTNVNFH 266

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356495641|ref|XP_003516683.1| PREDICTED: expansin-A7-like [Glycine max] Back     alignment and taxonomy information
>gi|225426726|ref|XP_002275613.1| PREDICTED: expansin-A7 [Vitis vinifera] gi|297742626|emb|CBI34775.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357481803|ref|XP_003611187.1| Expansin-A7 [Medicago truncatula] gi|355512522|gb|AES94145.1| Expansin-A7 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356565307|ref|XP_003550883.1| PREDICTED: putative expansin-A30-like [Glycine max] Back     alignment and taxonomy information
>gi|388491068|gb|AFK33600.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356540476|ref|XP_003538715.1| PREDICTED: expansin-A7-like [Glycine max] Back     alignment and taxonomy information
>gi|388521879|gb|AFK49001.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449460463|ref|XP_004147965.1| PREDICTED: expansin-A7-like [Cucumis sativus] gi|449494260|ref|XP_004159495.1| PREDICTED: expansin-A7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449452508|ref|XP_004144001.1| PREDICTED: expansin-A7-like [Cucumis sativus] gi|449525541|ref|XP_004169775.1| PREDICTED: expansin-A7-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query266
TAIR|locus:2034680262 EXPA7 "expansin A7" [Arabidops 0.951 0.965 0.656 1.1e-94
TAIR|locus:2015539257 EXPA18 "expansin A18" [Arabido 0.894 0.926 0.655 6.5e-90
TAIR|locus:2099991260 EXPA16 "expansin A16" [Arabido 0.921 0.942 0.536 1.2e-72
TAIR|locus:2043240257 EXPA4 "expansin A4" [Arabidops 0.921 0.953 0.538 3.2e-72
TAIR|locus:2053260257 EXPA6 "expansin A6" [Arabidops 0.939 0.972 0.503 2.6e-70
TAIR|locus:2040686262 EXP3 [Arabidopsis thaliana (ta 0.864 0.877 0.549 8e-69
TAIR|locus:2161028255 EXPA14 "expansin A14" [Arabido 0.917 0.956 0.525 2.7e-68
TAIR|locus:2133427255 EXPA17 "expansin A17" [Arabido 0.853 0.890 0.545 1.5e-67
TAIR|locus:2180182258 EXPA9 "expansin A9" [Arabidops 0.936 0.965 0.488 3.1e-67
TAIR|locus:2007106275 EXPA1 "expansin A1" [Arabidops 0.902 0.872 0.513 1.3e-66
TAIR|locus:2034680 EXPA7 "expansin A7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
 Identities = 170/259 (65%), Positives = 204/259 (78%)

Query:     7 SFGFSYLLVVLILAIAEKSNASGYTRPIFRSGAWQLAHATFYGDQSASETMGGACGYGNL 66
             SF   + +V ++ AI+ +  A GY RP    G W+ AHATFYGD++  ETMGGACGYGNL
Sbjct:     9 SFNKFFSIVFVVFAISGEFVA-GYYRP----GPWRYAHATFYGDETGGETMGGACGYGNL 63

Query:    67 RINGYGTDTAALSSMLFNGGYACGTCYQIKCHDSPHCYTYVSFTTVTATNLCPPNWSQDS 126
               +GYG  TAALS+ LFN GY CG C+QI C  SPHCY+  S T VTATNLCPPNW QDS
Sbjct:    64 FNSGYGLSTAALSTTLFNDGYGCGQCFQITCSKSPHCYSGKS-TVVTATNLCPPNWYQDS 122

Query:   127 NNGGWCNPPRAHFDMSKPAFMKIADWKAGIIPVIYRRVPCVKAGGLRFAFQGNGYWLLVY 186
             N GGWCNPPR HFDM+KPAFMK+A W+AGIIPV YRRVPC ++GG+RF FQGN YWLL++
Sbjct:   123 NAGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVPCQRSGGMRFQFQGNSYWLLIF 182

Query:   187 VLNVAGGGDIANMWVKGTRTGWISMSHNWGASYQAFATLGGQALSFKLTSYSSKETIFAY 246
             V+NV G GDI +M VKG+RT WISMSHNWGASYQAF++L GQ+LSF++TSY++ ETI+A+
Sbjct:   183 VMNVGGAGDIKSMAVKGSRTNWISMSHNWGASYQAFSSLYGQSLSFRVTSYTTGETIYAW 242

Query:   247 NVAPPNWNVGLTYSSDVNF 265
             NVAP NW+ G TY S  NF
Sbjct:   243 NVAPANWSGGKTYKSTANF 261
GO:0005576 "extracellular region" evidence=ISM;IEA
GO:0009664 "plant-type cell wall organization" evidence=IEA
GO:0009826 "unidimensional cell growth" evidence=ISS;NAS
GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS
GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS
GO:0048767 "root hair elongation" evidence=RCA;IMP
GO:0010054 "trichoblast differentiation" evidence=RCA
GO:0048446 "petal morphogenesis" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
TAIR|locus:2015539 EXPA18 "expansin A18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099991 EXPA16 "expansin A16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043240 EXPA4 "expansin A4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053260 EXPA6 "expansin A6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040686 EXP3 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161028 EXPA14 "expansin A14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133427 EXPA17 "expansin A17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180182 EXPA9 "expansin A9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007106 EXPA1 "expansin A1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8W2X8EXP30_ORYSJNo assigned EC number0.68370.86840.8684yesno
Q9LN94EXPA7_ARATHNo assigned EC number0.65380.95480.9694yesno
A2Y5R6EXPA4_ORYSINo assigned EC number0.54060.89090.9634N/Ano
Q0DHB7EXPA4_ORYSJNo assigned EC number0.54060.89090.9634yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query266
PLN00193256 PLN00193, PLN00193, expansin-A; Provisional 7e-90
PLN00050247 PLN00050, PLN00050, expansin A; Provisional 2e-81
smart0083787 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like 5e-40
pfam0333077 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like 3e-25
pfam0135782 pfam01357, Pollen_allerg_1, Pollen allergen 1e-24
PLN03023247 PLN03023, PLN03023, Expansin-like B1; Provisional 9e-20
PLN03024125 PLN03024, PLN03024, Putative EG45-like domain cont 4e-04
>gnl|CDD|215097 PLN00193, PLN00193, expansin-A; Provisional Back     alignment and domain information 
 Score =  266 bits (681), Expect = 7e-90
 Identities = 132/268 (49%), Positives = 171/268 (63%), Gaps = 15/268 (5%)

Query: 1   MASFLRSFGFSYLLVVLILAIAEKSNASGYTRPIFRSGAWQLAHATFYGDQSASETMGGA 60
           M+  L       +L+     +    NA       F    W  AHATFYG   AS TMGGA
Sbjct: 1   MSKSLLGLA---ILLQFCCYLFINVNA-------FTPSGWTKAHATFYGGSDASGTMGGA 50

Query: 61  CGYGNLRINGYGTDTAALSSMLFNGGYACGTCYQIKCH---DSPHCYTYVSFTTVTATNL 117
           CGYGNL   GYGT TAALS+ LFN G +CG CY+I C    DS  C    S  T+TATN 
Sbjct: 51  CGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGAS-VTITATNF 109

Query: 118 CPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIADWKAGIIPVIYRRVPCVKAGGLRFAFQ 177
           CPPN++  +NNGGWCNPP  HFDM++PA+ KI  ++ GI+PV+++RVPC K GG+RF   
Sbjct: 110 CPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTIN 169

Query: 178 GNGYWLLVYVLNVAGGGDIANMWVKGTRTGWISMSHNWGASYQAFATLGGQALSFKLTSY 237
           G  Y+ LV + NV G G I ++ +KG++TGW++MS NWGA++Q+ A L GQ+LSFK+T+ 
Sbjct: 170 GRDYFELVLISNVGGAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAYLDGQSLSFKVTT- 228

Query: 238 SSKETIFAYNVAPPNWNVGLTYSSDVNF 265
           +  +T F  NV P NW  G T+SS V F
Sbjct: 229 TDGQTRFFLNVVPANWGFGQTFSSSVQF 256

Length = 256
>gnl|CDD|165628 PLN00050, PLN00050, expansin A; Provisional Back     alignment and domain information
>gnl|CDD|129070 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>gnl|CDD|217497 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>gnl|CDD|216453 pfam01357, Pollen_allerg_1, Pollen allergen Back     alignment and domain information
>gnl|CDD|215542 PLN03023, PLN03023, Expansin-like B1; Provisional Back     alignment and domain information
>gnl|CDD|178595 PLN03024, PLN03024, Putative EG45-like domain containing protein 1; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 266
PLN00193256 expansin-A; Provisional 100.0
PLN00050247 expansin A; Provisional 100.0
PLN03023247 Expansin-like B1; Provisional 100.0
COG4305232 Endoglucanase C-terminal domain/subunit and relate 99.95
PLN03024125 Putative EG45-like domain containing protein 1; Pr 99.95
smart0083787 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi b 99.94
PLN00115118 pollen allergen group 3; Provisional 99.92
PF0135782 Pollen_allerg_1: Pollen allergen; InterPro: IPR007 99.89
PF0333078 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi 99.77
PF00967119 Barwin: Barwin family; InterPro: IPR001153 Barwin 98.93
PF07249119 Cerato-platanin: Cerato-platanin; InterPro: IPR010 98.1
TIGR00413208 rlpA rare lipoprotein A. This is a family of proka 97.86
PRK10672361 rare lipoprotein A; Provisional 97.79
COG0797233 RlpA Lipoproteins [Cell envelope biogenesis, outer 97.7
PF02015201 Glyco_hydro_45: Glycosyl hydrolase family 45; Inte 88.64
>PLN00193 expansin-A; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.7e-73  Score=507.61  Aligned_cols=229  Identities=55%  Similarity=1.064  Sum_probs=218.2

Q ss_pred             cCCCCeeEEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEecccccCCCCCCCceEEEEeC---CCCCccCCCceEE
Q 045913           35 FRSGAWQLAHATFYGDQSASETMGGACGYGNLRINGYGTDTAALSSMLFNGGYACGTCYQIKCH---DSPHCYTYVSFTT  111 (266)
Q Consensus        35 ~~~~~~~~g~aT~Yg~~~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v~c~---~~~~C~~g~~~v~  111 (266)
                      +..++|.+|+|||||++|++++++|||||+++...+++.++||+|+++|++|+.||+||||+|.   ++++|.++ ++|+
T Consensus        25 ~~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g-~sV~  103 (256)
T PLN00193         25 FTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKG-ASVT  103 (256)
T ss_pred             cCCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCC-CeEE
Confidence            3466799999999999999999999999999888889999999999999999999999999994   67789876 5899


Q ss_pred             EEEecCCCCCCCCCCCCCCCCCCCCCceecCHHHHHhhccccCCeeeEEEEEeecccCCceeEEEcccCcEEEEEEEeeC
Q 045913          112 VTATNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIADWKAGIIPVIYRRVPCVKAGGLRFAFQGNGYWLLVYVLNVA  191 (266)
Q Consensus       112 V~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~~~V~C~~~g~I~~~v~ss~~w~av~v~n~~  191 (266)
                      |+|||+||++|++|+++++||++++.|||||++||.+||....|+|+|+||||+|+++|+|+|+|++++||++|+|.|++
T Consensus       104 Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrRVpC~~~G~i~f~v~gn~y~~~vlv~nv~  183 (256)
T PLN00193        104 ITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTINGRDYFELVLISNVG  183 (256)
T ss_pred             EEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEEeccccCCCcEEEEcCCccEEEEEEEEeC
Confidence            99999999999999999999999899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcceEEEEEEecCcceeEcccCCCceEEecccCCCcceEEEEEEccCCeEEEEccccCCCCCCCcEEecCccc
Q 045913          192 GGGDIANMWVKGTRTGWISMSHNWGASYQAFATLGGQALSFKLTSYSSKETIFAYNVAPPNWNVGLTYSSDVNF  265 (266)
Q Consensus       192 g~~~I~sVeV~~~g~~W~~m~r~~g~~W~~~~~l~g~Pl~~RvT~~~~G~~v~~~~viP~~w~~G~ty~~~~qf  265 (266)
                      |+++|++||||+++++|++|+|+||++|+++.+|.++||+||||+.+ |+++++.||||++|++|+||++++||
T Consensus       184 G~gdV~~v~Ik~~~~~W~~M~R~wGa~W~~~~~l~g~plsfRvts~~-G~~~~~~~viPa~W~~G~ty~s~vqf  256 (256)
T PLN00193        184 GAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAYLDGQSLSFKVTTTD-GQTRFFLNVVPANWGFGQTFSSSVQF  256 (256)
T ss_pred             CCccEEEEEEecCCCCeeECcccccceeEecCCCCCCCEEEEEEEcC-CeEEEECceeCCCCCCCCeEecCccC
Confidence            99999999999987799999999999999998888889999999998 99999999999999999999999998

>PLN00050 expansin A; Provisional Back     alignment and domain information
>PLN03023 Expansin-like B1; Provisional Back     alignment and domain information
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03024 Putative EG45-like domain containing protein 1; Provisional Back     alignment and domain information
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>PLN00115 pollen allergen group 3; Provisional Back     alignment and domain information
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants [] Back     alignment and domain information
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures Back     alignment and domain information
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds Back     alignment and domain information
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family Back     alignment and domain information
>TIGR00413 rlpA rare lipoprotein A Back     alignment and domain information
>PRK10672 rare lipoprotein A; Provisional Back     alignment and domain information
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query266
2hcz_X245 Crystal Structure Of Expb1 (Zea M 1), A Beta-Expans 1e-20
1n10_A241 Crystal Structure Of Phl P 1, A Major Timothy Grass 1e-12
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And Group-1 Pollen Allergen From Maize Length = 245 Back     alignment and structure 
Iteration: 1

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 110/247 (44%), Gaps = 34/247 (13%)
Query: 37  SGAWQLAHATFYGDQ--SASETMGGACGYGNLRINGYGTDTAALSSMLFNGGYACGTCYQ 94
           +G W  A AT+YG    + +   GGACG  N+ +  Y   TA  +  +F  G  CG+CY+
Sbjct: 16  NGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYE 75
Query: 95  IKCHDSPHCYTYVSFTTVTATNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIAD--- 151
           ++C + P C        +T  N  P                  HFD+S  AF  +A    
Sbjct: 76  VRCKEKPECSGNPVTVYITDMNYEPIA--------------PYHFDLSGKAFGSLAKPGL 121
Query: 152 ----WKAGIIPVIYRRVPCVKAGGLRFAFQ----GNGYWLLVYVLNVAGGGDIANMWVKG 203
                  GI+ V +RRV C    G +  F      N  +L V V  VA  GDI  M ++ 
Sbjct: 122 NDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQD 181
Query: 204 TRTG-WISMSHNWGASYQ---AFATLGGQALSFKLTSYSSKETIFAYNVAPPNWNVGLTY 259
             +  W  M  +WGA ++   A A  G    S +LTS S K+ I A +V P NW     Y
Sbjct: 182 KLSAEWKPMKLSWGAIWRMDTAKALKG--PFSIRLTSESGKKVI-AKDVIPANWRPDAVY 238
Query: 260 SSDVNFH 266
           +S+V F+
Sbjct: 239 TSNVQFY 245
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen Allergen Length = 241 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query266
2hcz_X245 Beta-expansin 1A; domain 1 is A beta barrel and do 5e-60
1n10_A241 PHL P I, pollen allergen PHL P 1; plant allergen, 9e-55
3d30_A208 YOAJ, expansin like protein; peptidoglycan associa 1e-50
1wc2_A181 Endoglucanase; hydrolase, cellulase, cellulose, do 1e-26
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 2e-20
3ft1_A100 PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate 3e-18
1bmw_A96 PHL P II, pollen allergen PHL P2; allergy, immunog 3e-16
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Length = 245 Back     alignment and structure
 Score =  189 bits (481), Expect = 5e-60
 Identities = 73/245 (29%), Positives = 107/245 (43%), Gaps = 30/245 (12%)

Query: 37  SGAWQLAHATFYG--DQSASETMGGACGYGNLRINGYGTDTAALSSMLFNGGYACGTCYQ 94
           +G W  A AT+YG  + + +   GGACG  N+ +  Y   TA  +  +F  G  CG+CY+
Sbjct: 16  NGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYE 75

Query: 95  IKCHDSPHCYTYVSFTTVTATNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIAD--- 151
           ++C + P C        +T  N  P                  HFD+S  AF  +A    
Sbjct: 76  VRCKEKPECSGNPVTVYITDMNYEPIA--------------PYHFDLSGKAFGSLAKPGL 121

Query: 152 ----WKAGIIPVIYRRVPCVKAGGLRFAFQ----GNGYWLLVYVLNVAGGGDIANMWVKG 203
                  GI+ V +RRV C    G +  F      N  +L V V  VA  GDI  M ++ 
Sbjct: 122 NDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQD 181

Query: 204 TRTG-WISMSHNWGASYQAFATL-GGQALSFKLTSYSSKETIFAYNVAPPNWNVGLTYSS 261
             +  W  M  +WGA ++           S +LTS  S + + A +V P NW     Y+S
Sbjct: 182 KLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTS-ESGKKVIAKDVIPANWRPDAVYTS 240

Query: 262 DVNFH 266
           +V F+
Sbjct: 241 NVQFY 245
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Length = 241 Back     alignment and structure
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Length = 208 Back     alignment and structure
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Length = 181 Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Length = 108 Back     alignment and structure
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} PDB: 3ft9_A Length = 100 Back     alignment and structure
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Length = 96 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query266
2hcz_X245 Beta-expansin 1A; domain 1 is A beta barrel and do 100.0
1n10_A241 PHL P I, pollen allergen PHL P 1; plant allergen, 100.0
3d30_A208 YOAJ, expansin like protein; peptidoglycan associa 100.0
1wc2_A181 Endoglucanase; hydrolase, cellulase, cellulose, do 99.97
3ft1_A100 PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate 99.96
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 99.95
1bmw_A96 PHL P II, pollen allergen PHL P2; allergy, immunog 99.92
1bw3_A125 Barwin, basic barley SEED protein; lectin; NMR {Ho 99.7
4avr_A95 PA4485; unknown function, GRAM-negative bacteria, 99.28
3sul_A122 Cerato-platanin-like protein; double PSI beta barr 98.0
2kqa_A129 Cerato-platanin; elicitor, secreted, toxin; NMR {C 97.99
3m3g_A120 EPL1 protein; fungal, plant defense, fungus, polys 97.93
3suj_A127 Cerato-platanin 1; double PSI beta barrel, unknown 97.79
3suk_A125 Cerato-platanin-like protein; double PSI beta barr 97.74
3sum_A136 Cerato-platanin-like protein; double PSI beta barr 97.68
2eng_A210 Endoglucanase V; cellulose degradation, hydrolase 93.55
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Back     alignment and structure
Probab=100.00  E-value=1.3e-65  Score=458.27  Aligned_cols=214  Identities=35%  Similarity=0.625  Sum_probs=199.5

Q ss_pred             CCCeeEEEEEEeCCCCCCCC--CccccCCCCCCCCCCCCeEEEecccccCCCCCCCceEEEEeCCCCCccCCCceEEEEE
Q 045913           37 SGAWQLAHATFYGDQSASET--MGGACGYGNLRINGYGTDTAALSSMLFNGGYACGTCYQIKCHDSPHCYTYVSFTTVTA  114 (266)
Q Consensus        37 ~~~~~~g~aT~Yg~~~~~~~--~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v~c~~~~~C~~g~~~v~V~V  114 (266)
                      +++|++|+||||++++++++  ++|||||++++..|++.++||+|+++|++|+.||+||||+|.+++.|..+  +|+|+|
T Consensus        16 ~~~w~~g~AT~Yg~~~~~gt~~~gGACGyg~~~~~p~~~~~aAls~~lf~~G~~CG~Cy~V~c~~~~~C~~~--sv~V~V   93 (245)
T 2hcz_X           16 NGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGN--PVTVYI   93 (245)
T ss_dssp             CCCCEEEEEEECSCTTSCSSTTSCCTTCCCCTTSTTTTTCEEEECHHHHGGGTSTTCEEEEECCSSSSBCSS--CEEEEE
T ss_pred             CCceeeeEEEEeCCCCCCCcCCCCccCCCCCCCcCCCCCEEEEeCHHHcCCchhcCCeEEEEeCCCCccCCC--CEEEEE
Confidence            56799999999999998887  89999999988788999999999999999999999999999987789654  899999


Q ss_pred             ecCCCCCCCCCCCCCCCCCCCCCceecCHHHHHhhcc-------ccCCeeeEEEEEeecccCC--ceeEEEc--ccCcEE
Q 045913          115 TNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIAD-------WKAGIIPVIYRRVPCVKAG--GLRFAFQ--GNGYWL  183 (266)
Q Consensus       115 tD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~-------~~~G~v~i~~~~V~C~~~g--~I~~~v~--ss~~w~  183 (266)
                      ||+||            |++++.|||||+.||++||+       ...|+|+|+||+|+|+++|  ||+|+|+  |++||+
T Consensus        94 tD~C~------------C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~~~gg~ni~f~v~~Gs~~~~~  161 (245)
T 2hcz_X           94 TDMNY------------EPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYL  161 (245)
T ss_dssp             EEECC------------CTTSSSEEEECHHHHHHTBCTTCHHHHTTTCCEEEEEEEECCCCSTTCCCEEEECCCCSSSCC
T ss_pred             EeccC------------CCCCCccEEcCHHHHHHHhccccccccccCCEEEEEEEEEecCCCCCCcEEEEEcCCCCcceE
Confidence            99998            55568999999999999999       6899999999999999983  7999998  799999


Q ss_pred             EEEEEeeCCCcceEEEEEEecCc-ceeEcccCCCceEEeccc--CCCcceEEEEEEccCCeEEEEccccCCCCCCCcEEe
Q 045913          184 LVYVLNVAGGGDIANMWVKGTRT-GWISMSHNWGASYQAFAT--LGGQALSFKLTSYSSKETIFAYNVAPPNWNVGLTYS  260 (266)
Q Consensus       184 av~v~n~~g~~~I~sVeV~~~g~-~W~~m~r~~g~~W~~~~~--l~g~Pl~~RvT~~~~G~~v~~~~viP~~w~~G~ty~  260 (266)
                      +|+|.|++|+++|++|||+++++ .|++|+|+||++|+++..  |.+ ||+||||+.+ |++|+++||||++|++|+||+
T Consensus       162 avlv~n~~g~g~V~~V~ik~~~~~~W~~m~r~~G~~W~~~~~~~l~g-pls~RvT~~~-G~~v~~~nViP~~w~~g~ty~  239 (245)
T 2hcz_X          162 AVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKG-PFSIRLTSES-GKKVIAKDVIPANWRPDAVYT  239 (245)
T ss_dssp             CEEEECCCTTCCEEEEEBCCSSSCSCBCCEEEETTEEECSCCSSCCS-SCCEEEEETT-SCEEEESCSCCSSCCTTCEEE
T ss_pred             EEEEEecCCCCCEEEEEEEeCCCCceeECccCCCCEEEECCCCCCCC-CEEEEEEEeC-CcEEEEeeeecCCCCCCCEEe
Confidence            99999999999999999999876 899999999999999864  777 9999999999 999999999999999999999


Q ss_pred             cCcccC
Q 045913          261 SDVNFH  266 (266)
Q Consensus       261 ~~~qf~  266 (266)
                      +++||+
T Consensus       240 ~~~qf~  245 (245)
T 2hcz_X          240 SNVQFY  245 (245)
T ss_dssp             CSCCCC
T ss_pred             CccccC
Confidence            999994
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Back     alignment and structure
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Back     alignment and structure
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Back     alignment and structure
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Back     alignment and structure
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Back     alignment and structure
>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A Back     alignment and structure
>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01} Back     alignment and structure
>3sul_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.63A {Moniliophthora perniciosa} Back     alignment and structure
>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani} Back     alignment and structure
>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens} Back     alignment and structure
>3suj_A Cerato-platanin 1; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa} Back     alignment and structure
>3suk_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa} Back     alignment and structure
>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa} Back     alignment and structure
>2eng_A Endoglucanase V; cellulose degradation, hydrolase (endoglucanase), glycosidase; 1.50A {Humicola insolens} SCOP: b.52.1.1 PDB: 3eng_A* 4eng_A* 1hd5_A 1oa7_A* 1oa9_A 1l8f_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 266
d1wc2a1180 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mu 2e-43
d1n10a2143 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-t 1e-38
d1n10a195 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {T 3e-23
d1whoa_94 b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum praten 4e-18
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Length = 180 Back     information, alignment and structure

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase (CMCase)
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

 Score =  143 bits (362), Expect = 2e-43
 Identities = 34/172 (19%), Positives = 46/172 (26%), Gaps = 37/172 (21%)

Query: 38  GAWQLAHATFYGDQSASETMGGACGYGNLRIN-----GYGTDTAALSSMLFNG------G 86
                A  T Y D     +  GACG G    +       G+  AA S M F+       G
Sbjct: 12  NGKSCASTTNYHD-----SHKGACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCG 66

Query: 87  YACGTCYQIKCHDSPHCYTYVSFT-----TVTATNLCPPNWSQDSNNGGWCNPPRA---- 137
             CG C ++                    T   TNLCP  +     N  WCN        
Sbjct: 67  QHCGQCIKLTTTGGYVPGQGGPVREGLSKTFMITNLCPNIY----PNQDWCNQGSQYGGH 122

Query: 138 -------HFDMSKPAFMKIADWKAGIIPVIYRRVPCVKAGGLRFAFQGNGYW 182
                  H D+      ++           +  V C            N  +
Sbjct: 123 NKYGYELHLDLE-NGRSQVTGMGWNNPETTWEVVNCDSEHNHDHRTPSNSMY 173
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 143 Back     information, alignment and structure
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 95 Back     information, alignment and structure
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 94 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query266
d1n10a2143 Pollen allergen PHL P 1 N-terminal domain {Timothy 100.0
d1wc2a1180 Endoglucanase (CMCase) {Blue mussel (Mytilus eduli 100.0
d1n10a195 PHL P 1 C-terminal domain {Timothy grass (Phleum p 99.95
d1whoa_94 PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 1 99.93
d1bw3a_125 Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} 98.56
d2enga_210 Endoglucanase V (Eng V) {Humicola insolens [TaxId: 92.23
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=100.00  E-value=4.6e-37  Score=251.71  Aligned_cols=120  Identities=30%  Similarity=0.558  Sum_probs=102.2

Q ss_pred             CCCeeEEEEEEeCCCCCCCC--CccccCCCCCCCCCCCCeEEEecccccCCCCCCCceEEEEeCCCCCccCCCceEEEEE
Q 045913           37 SGAWQLAHATFYGDQSASET--MGGACGYGNLRINGYGTDTAALSSMLFNGGYACGTCYQIKCHDSPHCYTYVSFTTVTA  114 (266)
Q Consensus        37 ~~~~~~g~aT~Yg~~~~~~~--~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v~c~~~~~C~~g~~~v~V~V  114 (266)
                      .++|++|+||||++++++++  .+|||||++++..|++.++||+|+.+|++|..||+||||+|.++++|..+  +|+|+|
T Consensus        14 ~~~w~~g~AT~Yg~~~~~~~~~~gGACGyg~~~~~p~g~~~aAls~~l~~~g~~CG~cyev~c~~~~~c~~~--sv~V~v   91 (143)
T d1n10a2          14 GDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPEACSGE--PVVVHI   91 (143)
T ss_dssp             CCSCEEEEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECSSTTBCSC--CEEEEE
T ss_pred             CCCcEeeEEeEeCCCCCCCCCCCcccCCCCCcccCCCcceEEEeCHhHccCCCcCCcceEeEcCCCCcccCC--CEEEEE
Confidence            46799999999999887664  47999999988888999999999999999999999999999998889654  899999


Q ss_pred             ecCCCCCCCCCCCCCCCCCCCCCceecCHHHHHhhccc-------cCCeeeEEEEEeecccCC
Q 045913          115 TNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIADW-------KAGIIPVIYRRVPCVKAG  170 (266)
Q Consensus       115 tD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~-------~~G~v~i~~~~V~C~~~g  170 (266)
                      ||.||+           |. +..|||||++||.+||+.       +.|+|+|+||||+|+++|
T Consensus        92 td~c~~-----------~~-~~~hfDLS~~AF~~iA~~~~~~~~~~~Giv~V~yRrV~C~~~g  142 (143)
T d1n10a2          92 TDDNEE-----------PI-APYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPE  142 (143)
T ss_dssp             EEECSS-----------CS-SSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCT
T ss_pred             EecccC-----------CC-CCccccCCHHHHhhhccccchhhheecCccceEEEEEeccCCC
Confidence            999996           33 368999999999999984       679999999999999986
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Back     information, alignment and structure
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens [TaxId: 34413]} Back     information, alignment and structure