Citrus Sinensis ID: 045934

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Protein Sequence
MEREHNPAASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGEDEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYTGRPPRGAKTDWMMNEYRLADTRIKPSKSKGSMRLDDWVLCRVRHKSNMPKSAWEIHNTQRAELVNDSPRTEMARPAYVNHNDDMIRDCLTKDCRLLASILAGQALPPIQTVSSLSCQGSNNGNNSTPAYGECAPSGVNSPLTVSSKDTLFNPLKRKPSEENWCENLLPFNKKSICDNKDLDFPLSKALPNHGIDYYSQCQEGIYNNPSDTLIDFPELNELAFTSKYLQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHHccccccccccEEEEcccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccEEEEEEccEEcccccccccccccEEEEEccccccccccccccccccccEEEEEEEEccccccccHHHcccccccccccccccccccccccccccHHHHccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHHHHHHHHHHHHHccccccccEEEEEEccccccccccHHccccccEEEEEcccccccccccccccHcccccEEcccccccccccccccEEEEEEEEEEEcccccccccccEEEEEEEEccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccc
Coil and Loop (DISEMBL)
merehnpaasfqfppgfrfhpsdQELIVYYLQNkvtsrplpasliaevdlykynpwelpkqalfgedewfffsprdrkypngerpnraagsgywkatgtdkpilssvgsvnlGVKKALVFytgrpprgaktdwMMNEYRladtrikpskskgsmrlddwVLCRvrhksnmpksaWEIHNTQraelvndsprtemarpayvnhnddmiRDCLTKDCRLLASILagqalppiqtvsslscqgsnngnnstpaygecapsgvnspltvsskdtlfnplkrkpseenwcenllpfnkksicdnkdldfplskalpnhgidyysqcqegiynnpsdtlidfpelnelafTSKYLQ
Flexible Loop (DISEMBL)
merehnpaasfqfppgfrFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALfgedewfffsprdrkypngerpnraagsgywkatgtdkPILSSVGSVNLGVKKALVfytgrpprgaktdwmmNEYRLadtrikpskskgsmrlddWVLCRVRHKsnmpksaweihntqraelvndsprtEMARPAYVNHNDDMIRDCLTKDCRLLASILAGQALPPIQTVSSLSCQGSNNGNNSTPAYGECAPSGVNSPLTVSSKDTLFNplkrkpseenWCENLLPFNKKSICDNKDLDFPLSKALPNHGIDYYSQCQEGIYNNPSDTLIDFPELNELaftskylq
Low Complexity Region (SEG)
MEREHNPAASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGEDEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYTGRPPRGAKTDWMMNEYRLADTRIKPSKSKGSMRLDDWVLCRVRHKSNMPKSAWEIHNTQRAELVNDSPRTEMARPAYVNHNDDMIRDCLTKDCRLLASILAGQALPPIQTVSSLSCQGSNNGNNSTPAYGECAPSGVNSPLTVSSKDTLFNPLKRKPSEENWCENLLPFNKKSICDNKDLDFPLSKALPNHGIDYYSQCQEGIYNNPSDTLIDFPELNELAFTSKYLQ
Disordered region (IsUnstruct)
****************FRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGEDEWFFFSP*****************GYWKATGTDKPILSSVGSVNLGVKKALVFYTGRPPRGAKTDWMMNEYRLA*************RLDDWVLCRVRHK*******W**********************AYVNHNDDMIRDCLTKDCRLLASILAGQALPPIQT**************************************************NWCENLLPFNKKSICDNKDLDFPLSKALPNHGIDYYSQCQEGIYNNPSDTLIDFPELNELAF******
Disordered Region (DISOPRED)
***************GFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGEDEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYTGRPPRGAKTDWMMNEYRLA****************DWVLCRVRH***********************************************************************************************************************************************************************IDFPELNEL********
Disordered Region (DISEMBL)
*********SFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGEDEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYTGRPPRGAKTDWMMNEYRLADTRIKPSKSKGSMRLDDWVLCRVRHKSNMPKSAWEIHNTQRAELVNDSPRTEMARPAYVNHNDDMIRDCLTKDCRLLASILAGQALPPIQTVSSLSCQGSNNGNNSTPAYGECAPSGVNSPLTVSSKDTLFNPLKRKPSEENWCENLLPFNKKSICDNKDLDFPLSKALPNHGIDYYSQCQEGIYNNPSDTLIDFPELNELAFTSKYLQ
Disordered Region (DISPRO)
***********QFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGEDEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYTGRPPRGAKTDWMMNEYRLADTRI******GSMRLDDWVLCRVRHKSN**************************************************SILAGQALPPIQTVSSLSCQGSNNGNNSTPAYGECAPSGVNSPLTVSSKDTLFNPLKRKPSEENWCENLLPFNKKSICDNKDLDFPLSKALPNHGIDYYSQCQEGIYNNPSDTLIDFPELNELAFTSK***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEREHNPAASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGEDEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYTGRPPRGAKTDWMMNEYRLADTRIKPSKSKGSMRLDDWVLCRVRHKSNMPKSAWEIHNTQRAELVNDSPRTEMARPAYVNHNDDMIRDCLTKDCRLLASILAGQALPPIQTVSSLSCQGSNNGNNSTPAYGECAPSGVNSPLTVSSKDTLFNPLKRKPSEENWCENLLPFNKKSICDNKDLDFPLSKALPNHGIDYYSQCQEGIYNNPSDTLIDFPELNELAFTSKYLQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	350	2.2.26 [Sep-21-2011]
O49255	268	NAC transcription factor	yes	no	0.634	0.828	0.524	2e-63
D2SMN4	406	NAC transcription factor	N/A	no	0.525	0.453	0.576	2e-61
Q8H4S4	425	NAC transcription factor	yes	no	0.474	0.390	0.605	3e-61
Q52QH4	318	NAC domain-containing pro	no	no	0.568	0.625	0.526	3e-61
A2YMR0	425	NAC transcription factor	N/A	no	0.474	0.390	0.6	3e-61
A0SPJ8	406	NAC transcription factor	N/A	no	0.525	0.453	0.571	1e-60
A0SPJ9	402	NAC transcription factor	N/A	no	0.508	0.442	0.571	2e-60
A0SPJ3	405	NAC transcription factor	N/A	no	0.508	0.439	0.579	4e-60
A0SPJ6	396	NAC transcription factor	N/A	no	0.451	0.398	0.621	7e-60
A0SPJ4	405	NAC transcription factor	N/A	no	0.571	0.493	0.5	1e-59

>sp|O49255|NAC29_ARATH NAC transcription factor 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1

 Score =  243 bits (619), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 119/227 (52%), Positives = 153/227 (67%), Gaps = 5/227 (2%)

Query: 13  FPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGEDEWFFF 72
            PPGFRFHP+D+ELIVYYL+N+  S+P P S+I EVD+YK++PW+LP++  FGE+EW+FF
Sbjct: 9   LPPGFRFHPTDEELIVYYLRNQTMSKPCPVSIIPEVDIYKFDPWQLPEKTEFGENEWYFF 68

Query: 73  SPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYTGRPPRGAKTD 132
           SPR+RKYPNG RPNRAA SGYWKATGTDK I S  GS N+GVKKALVFY GRPP+G KTD
Sbjct: 69  SPRERKYPNGVRPNRAAVSGYWKATGTDKAIHS--GSSNVGVKKALVFYKGRPPKGIKTD 126

Query: 133 WMMNEYRLADTRIKPSKSKGSMRLDDWVLCRVRHKSNMPKSAWEIHNTQRAELVNDSPRT 192
           W+M+EYRL D+R   +K  GSMRLD+WVLCR+  K    K   E        L+ D  + 
Sbjct: 127 WIMHEYRLHDSRKASTKRNGSMRLDEWVLCRIYKKRGASKLLNEQEGFMDEVLMEDETKV 186

Query: 193 EMARPAYVNHNDDMIRDC--LTKDCRLLASILAGQALPPIQTVSSLS 237
            +         + M+     L + C  LA +L    + P+  + + S
Sbjct: 187 VVNEAERRTEEEIMMMTSMKLPRTCS-LAHLLEMDYMGPVSHIDNFS 232

May function in the transition between active cell division and cell expansion.
Arabidopsis thaliana (taxid: 3702)

>sp|D2SMN4|NAMB1_HORVS NAC transcription factor NAM-B1 OS=Hordeum vulgare subsp. spontaneum GN=NAM-B1 PE=4 SV=1

 Score =  236 bits (602), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 117/203 (57%), Positives = 148/203 (72%), Gaps = 19/203 (9%)

Query: 12  QFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGEDEWFF 71
           + PPGFRFHP+D+EL+V+YL+ K    PLP ++IAEVDLYK++PWELP++A FGE EW+F
Sbjct: 34  ELPPGFRFHPTDEELVVHYLKKKAAKAPLPVTIIAEVDLYKFDPWELPEKATFGEHEWYF 93

Query: 72  FSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSV---GSVNLGVKKALVFYTGRPPRG 128
           FSPRDRKYPNG RPNRAA SGYWKATGTDKPIL+S    G   +GVKKALVFY G+PPRG
Sbjct: 94  FSPRDRKYPNGARPNRAATSGYWKATGTDKPILASATGCGREKVGVKKALVFYRGKPPRG 153

Query: 129 AKTDWMMNEYRL------ADTRIKP------SKSKGSMRLDDWVLCRVRHKSNMPKSAWE 176
            KT+W+M+EYRL      + T  +P      S++  S+RLDDWVLCR+  K++  K+A  
Sbjct: 154 LKTNWIMHEYRLTGASAGSTTTSRPPPVTGGSRAPASLRLDDWVLCRIYKKTS--KAAAA 211

Query: 177 IHNTQRAELVNDSPRTEMARPAY 199
           + + QR+    DS   E A  AY
Sbjct: 212 VGDEQRSMECEDS--VEDAVTAY 232

Transcription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare subsp. spontaneum (taxid: 77009)

>sp|Q8H4S4|NAC10_ORYSJ NAC transcription factor ONAC010 OS=Oryza sativa subsp. japonica GN=ONAC010 PE=2 SV=1

 Score =  235 bits (600), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 112/185 (60%), Positives = 140/185 (75%), Gaps = 19/185 (10%)

Query: 3   REHNPAASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQA 62
           ++  P ++ + PPGFRFHP+D+EL+V+YL+ K  S PLP ++IAEVDLYK++PW+LP++A
Sbjct: 19  QQQQPGSAPELPPGFRFHPTDEELVVHYLKKKAASVPLPVTIIAEVDLYKFDPWDLPEKA 78

Query: 63  LFGEDEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSV--NLGVKKALVF 120
            FGE EW+FFSPRDRKYPNG RPNRAA SGYWKATGTDKPI+SS GS    +GVKKALVF
Sbjct: 79  NFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIMSS-GSTREKVGVKKALVF 137

Query: 121 YTGRPPRGAKTDWMMNEYRLAD----------TRIKP------SKSKGSMRLDDWVLCRV 164
           Y G+PP+G KT+W+M+EYRL D          TR  P      SK   S+RLDDWVLCR+
Sbjct: 138 YRGKPPKGVKTNWIMHEYRLTDTSSSAAAVATTRRPPPPITGGSKGAVSLRLDDWVLCRI 197

Query: 165 RHKSN 169
             K+N
Sbjct: 198 YKKTN 202

Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q52QH4|NAC68_ORYSJ NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1

 Score =  235 bits (600), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 109/207 (52%), Positives = 141/207 (68%), Gaps = 8/207 (3%)

Query: 9   ASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGEDE 68
           A    PPGFRFHP+D+EL+V+YL  KV  +PLP  +IAEVDLYK +PW+LP++ALFG  E
Sbjct: 17  AELNLPPGFRFHPTDEELVVHYLCRKVARQPLPVPIIAEVDLYKLDPWDLPEKALFGRKE 76

Query: 69  WFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYTGRPPRG 128
           W+FF+PRDRKYPNG RPNRAAG GYWKATG DKP+     +  +G+KKALVFY+G+ PRG
Sbjct: 77  WYFFTPRDRKYPNGSRPNRAAGRGYWKATGADKPVAPKGSARTVGIKKALVFYSGKAPRG 136

Query: 129 AKTDWMMNEYRLADTRIKPSKSKGSMRLDDWVLCRVRHKSNMPKSAWEIHNTQRAELVND 188
            KTDW+M+EYRLAD    P   KGS +LD+WVLCR+ +K N     WE    ++ ++ + 
Sbjct: 137 VKTDWIMHEYRLADADRAPGGKKGSQKLDEWVLCRLYNKKN----NWEKVKLEQQDVAS- 191

Query: 189 SPRTEMARPAYVNHNDDMIRDCLTKDC 215
                 A P   +H +  + D    D 
Sbjct: 192 ---VAAAAPRNHHHQNGEVMDAAAADT 215

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YMR0|NAC10_ORYSI NAC transcription factor ONAC010 OS=Oryza sativa subsp. indica GN=ONAC010 PE=3 SV=1

 Score =  235 bits (600), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 111/185 (60%), Positives = 140/185 (75%), Gaps = 19/185 (10%)

Query: 3   REHNPAASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQA 62
           ++  P ++ + PPGFRFHP+D+EL+V+YL+ K  S PLP ++IAEVDLYK++PWELP++A
Sbjct: 19  QQQQPGSAPELPPGFRFHPTDEELVVHYLKKKAASVPLPVTIIAEVDLYKFDPWELPEKA 78

Query: 63  LFGEDEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSV--NLGVKKALVF 120
            FGE EW+FFSPRDRKYPNG RPNRAA SGYWKATGTDKPI++S GS    +GVKKALVF
Sbjct: 79  NFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIMAS-GSTREKVGVKKALVF 137

Query: 121 YTGRPPRGAKTDWMMNEYRLAD----------TRIKP------SKSKGSMRLDDWVLCRV 164
           Y G+PP+G KT+W+M+EYRL D          TR  P      S+   S+RLDDWVLCR+
Sbjct: 138 YRGKPPKGVKTNWIMHEYRLTDTSSSAAAVATTRQPPPPITGGSRGAVSLRLDDWVLCRI 197

Query: 165 RHKSN 169
             K+N
Sbjct: 198 YKKTN 202

Transcription factor of the NAC family associated with male fertility.

Oryza sativa subsp. indica (taxid: 39946)

>sp|A0SPJ8|NAM1_HORVD NAC transcription factor NAM-1 OS=Hordeum vulgare var. distichum GN=NAM-1 PE=4 SV=1

 Score =  233 bits (595), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 116/203 (57%), Positives = 147/203 (72%), Gaps = 19/203 (9%)

Query: 12  QFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGEDEWFF 71
           + PPGFRFHP+D+EL+V+YL+ K    PLP ++IAEVDLYK++PWELP++A FGE EW+F
Sbjct: 34  ELPPGFRFHPTDEELVVHYLKKKAAKAPLPVTIIAEVDLYKFDPWELPEKATFGEHEWYF 93

Query: 72  FSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSV---GSVNLGVKKALVFYTGRPPRG 128
           FSPRDRKY NG RPNRAA SGYWKATGTDKPIL+S    G   +GVKKALVFY G+PPRG
Sbjct: 94  FSPRDRKYANGARPNRAATSGYWKATGTDKPILASATGCGREKVGVKKALVFYRGKPPRG 153

Query: 129 AKTDWMMNEYRL------ADTRIKP------SKSKGSMRLDDWVLCRVRHKSNMPKSAWE 176
            KT+W+M+EYRL      + T  +P      S++  S+RLDDWVLCR+  K++  K+A  
Sbjct: 154 LKTNWIMHEYRLTGASAGSTTTSRPPPVTGGSRAPASLRLDDWVLCRIYKKTS--KAAAA 211

Query: 177 IHNTQRAELVNDSPRTEMARPAY 199
           + + QR+    DS   E A  AY
Sbjct: 212 VGDEQRSMECEDS--VEDAVTAY 232

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

>sp|A0SPJ9|NAM2_HORVD NAC transcription factor NAM-2 OS=Hordeum vulgare var. distichum GN=NAM-2 PE=4 SV=1

 Score =  233 bits (593), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 108/189 (57%), Positives = 138/189 (73%), Gaps = 11/189 (5%)

Query: 12  QFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGEDEWFF 71
           + PPGFRFHP+D+EL+V+YL+ K    PLP ++IAEVDLYK++PWELP++A FGE EW+F
Sbjct: 27  ELPPGFRFHPTDEELVVHYLKKKAAKVPLPVTIIAEVDLYKFDPWELPEKATFGEQEWYF 86

Query: 72  FSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSS-VGSVNLGVKKALVFYTGRPPRGAK 130
           FSPRDRKYPNG RPNRAA SGYWKATGTDKPIL+S  G   +GVK ALVFY G+PP+G K
Sbjct: 87  FSPRDRKYPNGARPNRAATSGYWKATGTDKPILASGCGREKVGVKXALVFYRGKPPKGLK 146

Query: 131 TDWMMNEYRLADTRIKPSKSK----------GSMRLDDWVLCRVRHKSNMPKSAWEIHNT 180
           T+W+M+EYRL D     + S+           S+RLDDWVLCR+  K N   +A +  + 
Sbjct: 147 TNWIMHEYRLTDASSSAATSRPPPVTGGSRAASLRLDDWVLCRIYKKINKAAAADQQRSM 206

Query: 181 QRAELVNDS 189
           +  + V D+
Sbjct: 207 ECEDSVEDA 215

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

>sp|A0SPJ3|NAMA1_TRIDB NAC transcription factor NAM-A1 OS=Triticum durum GN=NAM-A1 PE=2 SV=1

 Score =  231 bits (590), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 113/195 (57%), Positives = 143/195 (73%), Gaps = 17/195 (8%)

Query: 12  QFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGEDEWFF 71
           + PPGFRFHP+D+EL+V+YL+ K    PLP ++IAEVDLYK++PWELP++A FGE EW+F
Sbjct: 32  ELPPGFRFHPTDEELVVHYLKKKAAKVPLPVTIIAEVDLYKFDPWELPEKATFGEQEWYF 91

Query: 72  FSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSS---VGSV--NLGVKKALVFYTGRPP 126
           FSPRDRKYPNG RPNRAA SGYWKATGTDKPIL+S    G V   LGVKKALVFY G+PP
Sbjct: 92  FSPRDRKYPNGARPNRAATSGYWKATGTDKPILASGTGCGLVREKLGVKKALVFYRGKPP 151

Query: 127 RGAKTDWMMNEYRLAD-----TRIKP-------SKSKGSMRLDDWVLCRVRHKSNMPKSA 174
           +G KT+W+M+EYRL D     T  +P       S++  S+RLDDWVLCR+  K N   + 
Sbjct: 152 KGLKTNWIMHEYRLTDVSGSTTTSRPPPPVTGGSRAAASLRLDDWVLCRIYKKINKAAAG 211

Query: 175 WEIHNTQRAELVNDS 189
            +  +T+  + V D+
Sbjct: 212 DQQRSTECEDSVEDA 226

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-B2) and one extra pseudogene (NAM-B1) (PubMed:17124321).

Triticum durum (taxid: 4567)

>sp|A0SPJ6|NAMB2_TRIDB NAC transcription factor NAM-B2 OS=Triticum durum GN=NAM-B2 PE=2 SV=1

 Score =  231 bits (588), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 105/169 (62%), Positives = 129/169 (76%), Gaps = 11/169 (6%)

Query: 12  QFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGEDEWFF 71
           + PPGFRFHP+D+EL+V+YL+ K    PLP ++I EVDLYK++PWELP++A FGE EW+F
Sbjct: 27  ELPPGFRFHPTDEELVVHYLKKKAAKVPLPVTIITEVDLYKFDPWELPEKATFGEQEWYF 86

Query: 72  FSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSS-VGSVNLGVKKALVFYTGRPPRGAK 130
           FSPRDRKYPNG RPNRAA SGYWKATGTDKPIL+S  G   +GVKKALVFY G+PP+G K
Sbjct: 87  FSPRDRKYPNGARPNRAATSGYWKATGTDKPILASGCGREKVGVKKALVFYRGKPPKGLK 146

Query: 131 TDWMMNEYRLADTRIKPSKSK----------GSMRLDDWVLCRVRHKSN 169
           T+W+M+EYRL D     + S+           S+RLDDWVLCR+  K N
Sbjct: 147 TNWIMHEYRLTDASSSATTSRPPPVTGGSRSASLRLDDWVLCRIYKKIN 195

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1.

Triticum durum (taxid: 4567)

>sp|A0SPJ4|NAMB1_TRIDC NAC transcription factor NAM-B1 OS=Triticum dicoccoides GN=NAM-B1 PE=4 SV=1

 Score =  230 bits (587), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 117/234 (50%), Positives = 149/234 (63%), Gaps = 34/234 (14%)

Query: 12  QFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGEDEWFF 71
           + PPGFRFHP+D+EL+V+YL+ K    PLP ++IAEVDLYK++PWELP++A  GE EW+F
Sbjct: 33  ELPPGFRFHPTDEELVVHYLKKKADKAPLPVNIIAEVDLYKFDPWELPEKATIGEQEWYF 92

Query: 72  FSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSS---VGSV--NLGVKKALVFYTGRPP 126
           FSPRDRKYPNG RPNRAA SGYWKATGTDKPIL+S    G V   LGVKKALVFY G+PP
Sbjct: 93  FSPRDRKYPNGARPNRAATSGYWKATGTDKPILASGTGCGLVREKLGVKKALVFYRGKPP 152

Query: 127 RGAKTDWMMNEYRLADTR------------IKPSKSKGSMRLDDWVLCRVRHKSNMPKSA 174
           +G KT+W+M+EYRL D                 S++  S+RLDDWVLCR+  K N   + 
Sbjct: 153 KGLKTNWIMHEYRLTDASGSTTATNRPPPVTGGSRAAASLRLDDWVLCRIYKKINKAAAG 212

Query: 175 WEIHNTQRAELVNDSPR-----------------TEMARPAYVNHNDDMIRDCL 211
            +  NT+  + V D+                   +  A P+ ++H D    D L
Sbjct: 213 DQQRNTECEDSVEDAVTAYPLYATAGMTGAGAHGSNYASPSLLHHQDSHFLDGL 266

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) and the hexaploid wheat (T.aestivum) carry a one bp insertion generating a non-functional allele of this gene. They have a delayed senescence and a lower grain protein, zinc and iron content (PubMed:17124321).

Triticum dicoccoides (taxid: 85692)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
255570849	336	NAC domain-containing protein, putative	0.937	0.976	0.598	1e-110
359478689	390	PREDICTED: uncharacterized protein LOC10	0.94	0.843	0.587	1e-104
297746236	376	unnamed protein product [Vitis vinifera]	0.94	0.875	0.584	1e-104
356547188	349	PREDICTED: NAC domain-containing protein	0.968	0.971	0.570	1e-101
356541898	349	PREDICTED: NAC domain-containing protein	0.965	0.968	0.566	1e-100
357453835	323	NAC domain-containing protein [Medicago	0.914	0.990	0.535	8e-92
297741580	349	unnamed protein product [Vitis vinifera]	0.957	0.959	0.528	1e-87
225439932	342	PREDICTED: uncharacterized protein LOC10	0.957	0.979	0.528	1e-87
356570746	335	PREDICTED: uncharacterized protein LOC10	0.931	0.973	0.484	4e-79
357510635	328	NAC domain transcription factor [Medicag	0.908	0.969	0.488	3e-78

>gi|255570849|ref|XP_002526377.1| NAC domain-containing protein, putative [Ricinus communis] gi|223534336|gb|EEF36048.1| NAC domain-containing protein, putative [Ricinus communis]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/339 (59%), Positives = 251/339 (74%), Gaps = 11/339 (3%)

Query: 7   PAASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGE 66
           P++ FQFPPGFRFHPSD+ELI++YL+N+V SRPLPAS+IAE+DLYKYNPW+LPK+ALFGE
Sbjct: 3   PSSDFQFPPGFRFHPSDEELIIHYLRNRVASRPLPASIIAEIDLYKYNPWDLPKKALFGE 62

Query: 67  DEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYTGRPP 126
           DEWFFFSPRDRKYPNG RPNRAAGSGYWKA+GTD+PIL+S GS N+GVKKALVFY+GRPP
Sbjct: 63  DEWFFFSPRDRKYPNGARPNRAAGSGYWKASGTDRPILTS-GSKNIGVKKALVFYSGRPP 121

Query: 127 RGAKTDWMMNEYRLADTRIKPSKSKGSMRLDDWVLCRVRHKSNMPKSAWEIHNTQRAELV 186
           +G KTDW+MNEYRL DT  KPS+ KGSMRLDDWVLCRVR K +M K++ E+ ++   +L 
Sbjct: 122 KGIKTDWLMNEYRLLDTTTKPSRLKGSMRLDDWVLCRVRQKGSMSKNSSEVQDSHNKDLF 181

Query: 187 NDSPRTEMARPAYVNHNDDMIRDCLTKDCRLLASILAGQALPPIQTVSSLSCQGSNNGNN 246
              P+ E A   Y N+N DMI +CL KDCRLLASILAGQ LPPI T+S +S Q SN  N+
Sbjct: 182 WYLPKMEEACRTYTNYNTDMITECLNKDCRLLASILAGQTLPPIDTISCVSNQESNKDNS 241

Query: 247 STPAYGECAPSGVNSPLTVSSKDTLFNPLKRKPSEENWCENLLPFNKKSICDNKDLDFPL 306
            T  Y E   + +NSP+TV S D+        P+E+  C N LP + + +   ++ D   
Sbjct: 242 LTLVYHEDGSNKLNSPITVPSFDS------SSPNEDARCNNFLPSDNQ-VSSTRNEDILP 294

Query: 307 SKALPNHGIDYY--SQCQEGIYN-NPSDTLIDFPELNEL 342
              +P   + YY  +Q Q+  YN NP D +  F ELNEL
Sbjct: 295 RDTIPCTDVKYYGQNQSQDSFYNPNPCDQISGFLELNEL 333

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478689|ref|XP_002282243.2| PREDICTED: uncharacterized protein LOC100253566 [Vitis vinifera]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/337 (58%), Positives = 247/337 (73%), Gaps = 8/337 (2%)

Query: 1   MEREHNPAASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPK 60
           MERE  P +SFQFPPGFRFHPSD+ELIV+YLQ KVTS PLPAS+IAE+DLYKYNPWELPK
Sbjct: 1   MERE--PNSSFQFPPGFRFHPSDEELIVHYLQKKVTSHPLPASVIAEIDLYKYNPWELPK 58

Query: 61  QALFGEDEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVF 120
           +ALFGE+EW+FFSPRDRKYPNG RPNRAA SG+WKATGTDKPIL+S GS ++GVKKALVF
Sbjct: 59  KALFGEEEWYFFSPRDRKYPNGVRPNRAAASGFWKATGTDKPILTSCGSKSIGVKKALVF 118

Query: 121 YTGRPPRGAKTDWMMNEYRLADTRIKP-SKSKGSMRLDDWVLCRVRHKSNMPKSAWEIHN 179
           Y GRPPRG KT+W+MNEYRL +T  +P S+SKGSMRLDDWVLCRVRHK NMPK+  E  +
Sbjct: 119 YIGRPPRGVKTEWIMNEYRLLNTMNRPGSRSKGSMRLDDWVLCRVRHKGNMPKNTCEGQD 178

Query: 180 TQRAELVNDSPRTEMARPAYVNHNDDMIRDCLTKDCRLLASILAGQALPPIQTVSSLSCQ 239
           +   EL++  P+ E  +P +  HN DM    L   C L+ASILAG  LP  +T+S+++ +
Sbjct: 179 SPSTELISYLPKIEEQQPMHTKHN-DMDTGYLYNHCELIASILAGHPLPHNETISNVTFK 237

Query: 240 GSNNGNNSTPAYGECAPSGVNSPLTVSSKDTLFNPLKRKPSEENWCENLLPFNKKSICDN 299
           GSNN +NS  +  E     VN P+TVSS D+ FNPL    +E++  EN  P  K    +N
Sbjct: 238 GSNN-SNSHGSVHEDGSDKVNLPITVSSFDSFFNPLNGNSTEKHRYENPPPSQKMLTSNN 296

Query: 300 KDLDFPLSKALPNHGIDYYSQCQEG---IYNNPSDTL 333
           +D      K   N+ ++++SQ Q     I +NPS+ +
Sbjct: 297 EDESLSPHKTSTNNHMNFHSQSQSQVSIINSNPSNPI 333

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746236|emb|CBI16292.3| unnamed protein product [Vitis vinifera]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/337 (58%), Positives = 246/337 (72%), Gaps = 8/337 (2%)

Query: 1   MEREHNPAASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPK 60
           MERE  P +SFQFPPGFRFHPSD+ELIV+YLQ KVTS PLPAS+IAE+DLYKYNPWELPK
Sbjct: 1   MERE--PNSSFQFPPGFRFHPSDEELIVHYLQKKVTSHPLPASVIAEIDLYKYNPWELPK 58

Query: 61  QALFGEDEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVF 120
           +ALFGE+EW+FFSPRDRKYPNG RPNRAA SG+WKATGTDKPIL+S GS ++GVKKALVF
Sbjct: 59  KALFGEEEWYFFSPRDRKYPNGVRPNRAAASGFWKATGTDKPILTSCGSKSIGVKKALVF 118

Query: 121 YTGRPPRGAKTDWMMNEYRLADTRIKP-SKSKGSMRLDDWVLCRVRHKSNMPKSAWEIHN 179
           Y GRPPRG KT+W+MNEYRL +T  +P S+SKGSMRLDDWVLCRVRHK NMPK+  E  +
Sbjct: 119 YIGRPPRGVKTEWIMNEYRLLNTMNRPGSRSKGSMRLDDWVLCRVRHKGNMPKNTCEGQD 178

Query: 180 TQRAELVNDSPRTEMARPAYVNHNDDMIRDCLTKDCRLLASILAGQALPPIQTVSSLSCQ 239
           +   EL++  P+ E  +P +  HN DM    L   C L+ASILAG  LP  +T+S+++ +
Sbjct: 179 SPSTELISYLPKIEEQQPMHTKHN-DMDTGYLYNHCELIASILAGHPLPHNETISNVTFK 237

Query: 240 GSNNGNNSTPAYGECAPSGVNSPLTVSSKDTLFNPLKRKPSEENWCENLLPFNKKSICDN 299
           GSNN N+    + E     VN P+TVSS D+ FNPL    +E++  EN  P  K    +N
Sbjct: 238 GSNNSNSHGSVH-EDGSDKVNLPITVSSFDSFFNPLNGNSTEKHRYENPPPSQKMLTSNN 296

Query: 300 KDLDFPLSKALPNHGIDYYSQCQEG---IYNNPSDTL 333
           +D      K   N+ ++++SQ Q     I +NPS+ +
Sbjct: 297 EDESLSPHKTSTNNHMNFHSQSQSQVSIINSNPSNPI 333

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547188|ref|XP_003541998.1| PREDICTED: NAC domain-containing protein 68-like [Glycine max]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/347 (57%), Positives = 250/347 (72%), Gaps = 8/347 (2%)

Query: 8   AASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGED 67
            +++ FPPGFRFHPSD+ELIV+YLQNK++SRPLPAS+IAE++LYKYNPWELP ++LFGE+
Sbjct: 7   GSNYSFPPGFRFHPSDEELIVHYLQNKISSRPLPASIIAEINLYKYNPWELPNKSLFGEE 66

Query: 68  EWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYTGRPPR 127
           EW+FFSPRDRKYPNG RPNRAA SGYWKATGTDKPILSS GS  +GVKKALVFY+GRPP+
Sbjct: 67  EWYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKPILSSCGSKRIGVKKALVFYSGRPPK 126

Query: 128 GAKTDWMMNEYRLADTRIKPSKSKGSMRLDDWVLCRVRHKSNMPKSAWEIHNT-QRAELV 186
           GAKTDW+MNEYRL DT    S+ KGSMRLDDWVLCRVRHK   PK++ E   +     L 
Sbjct: 127 GAKTDWIMNEYRLVDTITTSSRLKGSMRLDDWVLCRVRHKGYSPKNSCENQESPNELNLS 186

Query: 187 NDSPRTEMARPAYVNHNDDMIRDCLTKDCRLLASILAGQALPPIQTVSSLSCQGSNNGNN 246
              PR+E   P  +N   DMI D   KD +++ASIL G  +PP +++ +LS +G   GNN
Sbjct: 187 AKLPRSE-EYPTNMNCRADMIPDYQYKDYQIIASILVGGPIPPTESMPNLSFKGC-KGNN 244

Query: 247 STPAYGECAPSGVNSPLTVSSKDTLFNPLKRKPSEENWCENLLPFNKKSICDNKDLDFPL 306
               Y E   + VNS  T+ S ++ FNPL RK SE+    NL+ FN+K   +N+ +D   
Sbjct: 245 VVSVY-EDDFTKVNSQATIPSLESYFNPLTRKSSEDEQYGNLISFNRKFNTENR-MDGST 302

Query: 307 SKALPNHGIDYY--SQCQEGIYN-NPSDTLIDFPELNELAFTSKYLQ 350
           SK L +  ++ Y  +Q Q+ I+N NP D  I+F ELNEL F+ +Y Q
Sbjct: 303 SKVLTSRELNCYNQNQSQDDIFNVNPPDPSINFQELNELDFSGRYHQ 349

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541898|ref|XP_003539409.1| PREDICTED: NAC domain-containing protein 68-like [Glycine max]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/348 (56%), Positives = 251/348 (72%), Gaps = 10/348 (2%)

Query: 8   AASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGED 67
            +++ FPPGFRFHPSD+ELIV+YL+NKV+SRPLPA +IAE+DLYKYNPWELP ++LFGE+
Sbjct: 7   GSNYSFPPGFRFHPSDEELIVHYLENKVSSRPLPACIIAEIDLYKYNPWELPNKSLFGEE 66

Query: 68  EWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYTGRPPR 127
           EW+FFSPRDRKYPNG RPNRAA SGYWKATGTDKPILSS GS  +GVKKALVFY+GRPP+
Sbjct: 67  EWYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKPILSSCGSRRIGVKKALVFYSGRPPK 126

Query: 128 GAKTDWMMNEYRLADTRIKPSKSKGSMRLDDWVLCRVRHKSNMPKSAWEIHNTQRAELVN 187
           GAKTDW+MNEYRL DT IK S+ KGSMRLDDWVLCRVR+K    K++ E  N +    +N
Sbjct: 127 GAKTDWIMNEYRLVDTTIKSSRLKGSMRLDDWVLCRVRYKGYSQKNSCE--NQESPSELN 184

Query: 188 DSPRTEMAR--PAYVNHNDDMIRDCLTKDCRLLASILAGQALPPIQTVSSLSCQGSNNGN 245
            S +   +   P  +N   DMI D   KD +++ASIL G  +PPI+++ +LS +G   GN
Sbjct: 185 LSAKLLRSEENPTKMNCRADMIPDYQYKDYQIIASILVGGPIPPIESMPNLSFKGC-KGN 243

Query: 246 NSTPAYGECAPSGVNSPLTVSSKDTLFNPLKRKPSEENWCENLLPFNKKSICDNKDLDFP 305
           N    Y +    G NS  T+ S ++ FNPL RK +E+    NL+ FN+K   DN+ +D  
Sbjct: 244 NVVSDYEDGFTKG-NSQTTIPSLESYFNPLTRKSNEDEQYGNLISFNRKFNTDNR-MDGS 301

Query: 306 LSKALPNHGIDYYSQ--CQEGIYN-NPSDTLIDFPELNELAFTSKYLQ 350
            SK L +  ++ Y+Q   Q+ I+N NP D  I+F ELNEL F+ +Y Q
Sbjct: 302 TSKVLNSRELNCYNQNHSQDDIFNGNPPDPTINFQELNELDFSGRYHQ 349

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453835|ref|XP_003597198.1| NAC domain-containing protein [Medicago truncatula] gi|87241197|gb|ABD33055.1| No apical meristem (NAM) protein [Medicago truncatula] gi|355486246|gb|AES67449.1| NAC domain-containing protein [Medicago truncatula]

 Score =  343 bits (879), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 189/353 (53%), Positives = 231/353 (65%), Gaps = 33/353 (9%)

Query: 1   MEREHNPAAS-FQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELP 59
           ME + N + S + FPPGFRFHPSD+ELIV+YLQNK+ SRPLPAS+IAE+DLYKYNPWELP
Sbjct: 1   MEGQQNGSKSNYTFPPGFRFHPSDEELIVHYLQNKIKSRPLPASIIAEIDLYKYNPWELP 60

Query: 60  KQALFGEDEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALV 119
           K++LFGE+EW+FFSPRDRKYPNG RPNR A SGYWKATGTDKPI+SS  S ++GVKKALV
Sbjct: 61  KKSLFGEEEWYFFSPRDRKYPNGLRPNRTAASGYWKATGTDKPIISSCESKHIGVKKALV 120

Query: 120 FYTGRPPRGAKTDWMMNEYRLADTRIKPSKSKGSMRLDDWVLCRVRHKSNMPKSAWE-IH 178
           FY+GRPP+G KTDW+MNEYRL DT  K  K KGSMRLDDWVLCRVR+K    K+  E   
Sbjct: 121 FYSGRPPKGVKTDWIMNEYRLVDTTAKSFKLKGSMRLDDWVLCRVRNKGYSLKNLSENQE 180

Query: 179 NTQRAELVNDSPRTEMARPAYVNHNDDMIRDCLTKDCRLLASILAGQALPPIQTVSSLSC 238
           N     +  + PR E  RP  VN   D+I D   KD +++ASIL G  +PP + +SSLS 
Sbjct: 181 NPSEPTIPLNLPRGE-ERPTNVNLRSDIITDYQFKDYQIIASILVGGVIPPTENMSSLSV 239

Query: 239 QGSNNGNNSTPAYGECAPSGVNSPLTVSSKDTLFNPLKRKPSEEN-WCENLLPFNKKSIC 297
            GS    N+  +  E   +  NS  T  S +  FNPLKRK +E++   ENL+ FN K   
Sbjct: 240 NGSKF--NNLNSVSEEGFNKANSQTTNYSLECYFNPLKRKSNEDDDQFENLISFNSKFNS 297

Query: 298 DNKDLDFPLSKALPNHGIDYYSQCQEGIYNNPSDTLIDFPELNELAFTSKYLQ 350
           +NK  + P                            IDF +LN+  FT +Y Q
Sbjct: 298 ENKLCESPS---------------------------IDFQKLNKFTFTERYQQ 323

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741580|emb|CBI32712.3| unnamed protein product [Vitis vinifera]

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 185/350 (52%), Positives = 233/350 (66%), Gaps = 15/350 (4%)

Query: 1   MEREHNPAASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPK 60
           M+ + +     Q PPGFRFHPSD+ELI++YL+NK TS P+PAS+IAEVDLYKYNPWELP 
Sbjct: 1   MDTQLSSNIQLQLPPGFRFHPSDEELIIHYLRNKATSSPIPASIIAEVDLYKYNPWELPT 60

Query: 61  QALFGEDEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVF 120
           +ALFG+DEW+FF+PRDRKYPNG RPNRAA SGYWKATGTDKPIL+S G+ ++GVKKALVF
Sbjct: 61  KALFGQDEWYFFTPRDRKYPNGVRPNRAAASGYWKATGTDKPILTSCGTRSIGVKKALVF 120

Query: 121 YTGRPPRGAKTDWMMNEYRLADTRIKPSKSKGSMRLDDWVLCRVRHKSNMPKSAWEIHNT 180
           Y GRPP+G KTDW+M+EYRL D+  +  K KGSMRLDDWVLCRVR KS++P++ WE  N 
Sbjct: 121 YKGRPPKGVKTDWIMHEYRLLDSMFRTLKHKGSMRLDDWVLCRVRQKSSIPRNIWEDRNG 180

Query: 181 QRAELVNDSPRTEMARPAYVNHNDDMIRDCLTKDCRLLASILAGQALPPIQTVSSLSCQG 240
             +E  + SP  + A     N N +MI+  L  DC LL  I A Q        S++S +G
Sbjct: 181 PSSEPASYSPAVDKACNMTTNSNVEMIKSYLYNDCPLLPYIFASQDF------SAISFEG 234

Query: 241 SNNGNNSTPAYGECAPSGVNSPLTVSSKDTLFNPLKRKPSEENWCENLLPFNKK-SICDN 299
            N G   +    E      N  ++VSS ++LFNP KRKP E N  E  LP +KK +  D+
Sbjct: 235 RNKGKFYSSVCSENNSDQKNLLVSVSSSNSLFNPQKRKPIEGNQYEGFLPPSKKLNNRDD 294

Query: 300 KDLDFPLSKALPNHGIDYYSQCQEGIYNNPS----DTLIDFPELNELAFT 345
           KD  F LS           S+ +E   NN +    D++  + ELN LAFT
Sbjct: 295 KD-KFLLSVDSTEMNC---SRTEESEDNNFTADQWDSITQYQELNYLAFT 340

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439932|ref|XP_002275457.1| PREDICTED: uncharacterized protein LOC100248298 [Vitis vinifera]

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 185/350 (52%), Positives = 233/350 (66%), Gaps = 15/350 (4%)

Query: 1   MEREHNPAASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPK 60
           M+ + +     Q PPGFRFHPSD+ELI++YL+NK TS P+PAS+IAEVDLYKYNPWELP 
Sbjct: 1   MDTQLSSNIQLQLPPGFRFHPSDEELIIHYLRNKATSSPIPASIIAEVDLYKYNPWELPT 60

Query: 61  QALFGEDEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVF 120
           +ALFG+DEW+FF+PRDRKYPNG RPNRAA SGYWKATGTDKPIL+S G+ ++GVKKALVF
Sbjct: 61  KALFGQDEWYFFTPRDRKYPNGVRPNRAAASGYWKATGTDKPILTSCGTRSIGVKKALVF 120

Query: 121 YTGRPPRGAKTDWMMNEYRLADTRIKPSKSKGSMRLDDWVLCRVRHKSNMPKSAWEIHNT 180
           Y GRPP+G KTDW+M+EYRL D+  +  K KGSMRLDDWVLCRVR KS++P++ WE  N 
Sbjct: 121 YKGRPPKGVKTDWIMHEYRLLDSMFRTLKHKGSMRLDDWVLCRVRQKSSIPRNIWEDRNG 180

Query: 181 QRAELVNDSPRTEMARPAYVNHNDDMIRDCLTKDCRLLASILAGQALPPIQTVSSLSCQG 240
             +E  + SP  + A     N N +MI+  L  DC LL  I A Q        S++S +G
Sbjct: 181 PSSEPASYSPAVDKACNMTTNSNVEMIKSYLYNDCPLLPYIFASQDF------SAISFEG 234

Query: 241 SNNGNNSTPAYGECAPSGVNSPLTVSSKDTLFNPLKRKPSEENWCENLLPFNKK-SICDN 299
            N G   +    E      N  ++VSS ++LFNP KRKP E N  E  LP +KK +  D+
Sbjct: 235 RNKGKFYSSVCSENNSDQKNLLVSVSSSNSLFNPQKRKPIEGNQYEGFLPPSKKLNNRDD 294

Query: 300 KDLDFPLSKALPNHGIDYYSQCQEGIYNNPS----DTLIDFPELNELAFT 345
           KD  F LS           S+ +E   NN +    D++  + ELN LAFT
Sbjct: 295 KD-KFLLSVDSTEMNC---SRTEESEDNNFTADQWDSITQYQELNYLAFT 340

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570746|ref|XP_003553546.1| PREDICTED: uncharacterized protein LOC100788799 [Glycine max]

 Score =  301 bits (770), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 170/351 (48%), Positives = 221/351 (62%), Gaps = 25/351 (7%)

Query: 1   MEREHNPAASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPK 60
           M+++ N  +  Q PPGFRFHPSD+ELIV+YL+NKVTS PLPAS IAE+DLYKYNPWELP 
Sbjct: 1   MDKDAN--SEIQLPPGFRFHPSDEELIVHYLRNKVTSSPLPASFIAEIDLYKYNPWELPS 58

Query: 61  QALFGEDEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVF 120
           +ALFGEDEW+FF+PRDRKYPNG RPNRAA SGYWKATGTDKPI +S G  ++ VKKALVF
Sbjct: 59  KALFGEDEWYFFTPRDRKYPNGVRPNRAAASGYWKATGTDKPIFTSCGMKSIAVKKALVF 118

Query: 121 YTGRPPRGAKTDWMMNEYRLADTRIKPSKSKGSMRLDDWVLCRVRHKSNMPKSAWEIHNT 180
           Y GRPP+G+KTDW+M+EYRL D+ I  SK  G+MRLD+WVLCRVR K+  P+S WE  N 
Sbjct: 119 YKGRPPKGSKTDWIMHEYRLHDSTISNSKQGGTMRLDEWVLCRVRQKTISPRSLWEDSNE 178

Query: 181 QRAELVNDSPRTEMARPAYVNHNDDMIRDCLTKDCRLLASILAGQ-ALPPIQTVSSLSCQ 239
              E       T   +      N + +++ L  +  +L  ILA + ALP    ++S S  
Sbjct: 179 PIYE------PTSYFQQMSEKSNPEPVKNSLHSEYPMLPYILASKSALPNSIDMASSSSF 232

Query: 240 GSNNGNNSTPAYGECAPSGVNSPLTVSS-----KDTLFNPLKRKPSEENWCENLLPFNKK 294
           G    N+   AY       +N+ +  +       + LFNPLKR+  EEN  +   P NKK
Sbjct: 233 GC---NDDVKAYASLHDGNLNNIIIGAQFIAPVAEDLFNPLKRRNIEENELDLYAPLNKK 289

Query: 295 SICDNKDLDFPLSKALPNHGIDYYSQCQEGIYNNPSDTLIDFPELNELAFT 345
            + +  D+   + +   N G ++ +  Q         ++I   E N LAFT
Sbjct: 290 -LNEEVDVGKQILEKDVNKGYNFNNFDQWT-------SIIQPQEFNSLAFT 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510635|ref|XP_003625606.1| NAC domain transcription factor [Medicago truncatula] gi|355500621|gb|AES81824.1| NAC domain transcription factor [Medicago truncatula]

 Score =  298 bits (763), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 170/348 (48%), Positives = 223/348 (64%), Gaps = 30/348 (8%)

Query: 4   EHNPAASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQAL 63
           + NP +  Q PPGFRFHPSD+ELIV+YL+NKVTS PLPAS IAE++LYKYNPWELP +AL
Sbjct: 2   DKNPHSEIQLPPGFRFHPSDEELIVHYLRNKVTSSPLPASFIAEINLYKYNPWELPSKAL 61

Query: 64  FGEDEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYTG 123
           FGE+EW+FF+PRDRKYP G RPNRAAG GYWKATGTDKPIL+S G  ++GVKKALVFY G
Sbjct: 62  FGEEEWYFFTPRDRKYPKGLRPNRAAGVGYWKATGTDKPILTSCGLKSIGVKKALVFYKG 121

Query: 124 RPPRGAKTDWMMNEYRLADTRIKPSKSKGSMRLDDWVLCRVRHKSNMPKSAWEIHNTQRA 183
           RPP+G+KT+W+M+EYRL D+ I  S   GSMRLD+WVLCRVR K   P+S+WE  N    
Sbjct: 122 RPPKGSKTEWIMHEYRLHDSMISNSNHSGSMRLDEWVLCRVRQKMGSPRSSWEDSN---- 177

Query: 184 ELVNDSPRTEMARPAYVNHNDDMIRDCLTKDCRLLASILAGQALPPIQTVSSLSCQGSNN 243
           EL  +S  T   +   VN N + +++ +  +  +L  ILA ++  P    +S+    S+N
Sbjct: 178 ELSYES--TSQFQQMTVNSNPEPVKNYVQNEYPMLPYILASKSALP----NSIGMT-SDN 230

Query: 244 GNNSTPAYGECAPSGVNSPLTVSSKDTLFN-PLKRKPSEENWCENLLPFNKKSICDNKD- 301
            N    +Y +   + + +    ++ + LFN PLKRK  E+N   +      KS+    D 
Sbjct: 231 VNIQASSYDDDL-NVIGAQFLSATTEGLFNKPLKRKAVEDNVAMDFYDVLNKSLSREVDG 289

Query: 302 ----LDFPLSKALPNHGIDYYSQCQEGIYNNPSDTLIDFPELNELAFT 345
               L+  LSK     G ++YS  Q         ++I   ELN L FT
Sbjct: 290 RKQSLEKDLSK-----GYNFYSFDQW-------TSIIQPQELNSLTFT 325

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
TAIR|locus:2007166	268	NAP "NAC-like, activated by AP	0.631	0.824	0.526	5e-60
TAIR|locus:2011516	320	NAM "NO APICAL MERISTEM" [Arab	0.528	0.578	0.581	1e-59
TAIR|locus:2090186	364	NAC2 "NAC domain containing pr	0.465	0.447	0.629	5.7e-59
TAIR|locus:2008490	323	NAC025 "NAC domain containing	0.462	0.501	0.637	1.7e-57
TAIR|locus:2204685	253	NAC032 "NAC domain containing	0.448	0.620	0.625	1.6e-56
TAIR|locus:2090176	317	NAC3 "NAC domain containing pr	0.648	0.716	0.493	1.8e-55
TAIR|locus:2198225	289	ATAF1 [Arabidopsis thaliana (t	0.674	0.816	0.460	4.8e-55
TAIR|locus:2011531	317	NAC019 "NAC domain containing	0.48	0.529	0.582	1.5e-53
TAIR|locus:504956335	283	ATAF2 [Arabidopsis thaliana (t	0.445	0.551	0.6	2.1e-52
TAIR|locus:2160634	312	NAC102 "NAC domain containing	0.445	0.5	0.6	2.1e-52

TAIR|locus:2007166 NAP "NAC-like, activated by AP3/PI" [Arabidopsis thaliana (taxid:3702)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 119/226 (52%), Positives = 153/226 (67%)

Query:    14 PPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGEDEWFFFS 73
             PPGFRFHP+D+ELIVYYL+N+  S+P P S+I EVD+YK++PW+LP++  FGE+EW+FFS
Sbjct:    10 PPGFRFHPTDEELIVYYLRNQTMSKPCPVSIIPEVDIYKFDPWQLPEKTEFGENEWYFFS 69

Query:    74 PRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYTGRPPRGAKTDW 133
             PR+RKYPNG RPNRAA SGYWKATGTDK I S  GS N+GVKKALVFY GRPP+G KTDW
Sbjct:    70 PRERKYPNGVRPNRAAVSGYWKATGTDKAIHS--GSSNVGVKKALVFYKGRPPKGIKTDW 127

Query:   134 MMNEYRLADTRIKPSKSKGSMRLDDWVLCRVRHKSNMPKSAWEIHNTQRAELVNDSPRTE 193
             +M+EYRL D+R   +K  GSMRLD+WVLCR+  K    K   E        L+ D  +  
Sbjct:   128 IMHEYRLHDSRKASTKRNGSMRLDEWVLCRIYKKRGASKLLNEQEGFMDEVLMEDETKVV 187

Query:   194 MARPAYVNHNDDMIRDC--LTKDCRLLASILAGQALPPIQTVSSLS 237
             +         + M+     L + C L A +L    + P+  + + S
Sbjct:   188 VNEAERRTEEEIMMMTSMKLPRTCSL-AHLLEMDYMGPVSHIDNFS 232

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010150 "leaf senescence" evidence=IMP

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=IMP

GO:0009908 "flower development" evidence=IMP

TAIR|locus:2011516 NAM "NO APICAL MERISTEM" [Arabidopsis thaliana (taxid:3702)]

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 114/196 (58%), Positives = 143/196 (72%)

Query:     7 PAASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGE 66
             P      PPGFRFHP+D+EL+++YL+ K  S PLP ++IA+VDLYK++PWELP +A FGE
Sbjct:    11 PPPQPNLPPGFRFHPTDEELVIHYLKRKADSVPLPVAIIADVDLYKFDPWELPAKASFGE 70

Query:    67 DEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVG--SVNLGVKKALVFYTGR 124
              EW+FFSPRDRKYPNG RPNRAA SGYWKATGTDKP++S+ G  S  +GVKKALVFY+G+
Sbjct:    71 QEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVISTGGGGSKKVGVKKALVFYSGK 130

Query:   125 PPRGAKTDWMMNEYRLADTRIKPS------KSKGSMRLDDWVLCRVRHKSNMPKSAWEIH 178
             PP+G K+DW+M+EYRL D   KP+        K S+RLDDWVLCR+  K+N   S    H
Sbjct:   131 PPKGVKSDWIMHEYRLTDN--KPTHICDFGNKKNSLRLDDWVLCRIYKKNNSTASRHH-H 187

Query:   179 NTQRAELVNDSPRTEM 194
             +     L ND  R +M
Sbjct:   188 HLHHIHLDNDHHRHDM 203

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

TAIR|locus:2090186 NAC2 "NAC domain containing protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 107/170 (62%), Positives = 134/170 (78%)

Query:     7 PAASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGE 66
             P      PPGFRFHP+D+EL+V+YL+ K  S PLP ++IAEVDLYK++PWELP +A FGE
Sbjct:    11 PPPQPNLPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIAEVDLYKFDPWELPAKASFGE 70

Query:    67 DEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYTGRPP 126
              EW+FFSPRDRKYPNG RPNRAA SGYWKATGTDKP+L+S G+  +GVKKALVFY+G+PP
Sbjct:    71 QEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLASDGNQKVGVKKALVFYSGKPP 130

Query:   127 RGAKTDWMMNEYRLADTRI--KP-----SKSKGSMRLDDWVLCRVRHKSN 169
             +G K+DW+M+EYRL + +   +P        K S+RLDDWVLCR+  K+N
Sbjct:   131 KGVKSDWIMHEYRLIENKPNNRPPGCDFGNKKNSLRLDDWVLCRIYKKNN 180

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2008490 NAC025 "NAC domain containing protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
 Identities = 109/171 (63%), Positives = 132/171 (77%)

Query:    14 PPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGEDEWFFFS 73
             PPGFRFHP+D+EL+V+YL+ K  S PLP S+IAE+DLYK++PWELP +A FGE EW+FFS
Sbjct:    17 PPGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLYKFDPWELPSKASFGEHEWYFFS 76

Query:    74 PRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYTGRPPRGAKTDW 133
             PRDRKYPNG RPNRAA SGYWKATGTDKPI +   S  +GVKKALVFY G+PP+G KTDW
Sbjct:    77 PRDRKYPNGVRPNRAATSGYWKATGTDKPIFTC-NSHKVGVKKALVFYGGKPPKGIKTDW 135

Query:   134 MMNEYRLAD----TRIKP----SKSKGSMRLDDWVLCRVRHKSNMPKSAWE 176
             +M+EYRL D    T  KP    +  K S+RLDDWVLCR+  K++  +   E
Sbjct:   136 IMHEYRLTDGNLSTAAKPPDLTTTRKNSLRLDDWVLCRIYKKNSSQRPTME 186

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2204685 NAC032 "NAC domain containing protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 102/163 (62%), Positives = 129/163 (79%)

Query:     9 ASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGEDE 68
             A  QFPPGFRFHP+D+EL++ YL  K  S+P+PA +I E+DLY+Y+PW+LP  AL+GE E
Sbjct:     6 ADLQFPPGFRFHPTDEELVLMYLCRKCASQPIPAPIITELDLYRYDPWDLPDMALYGEKE 65

Query:    69 WFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVN-LGVKKALVFYTGRPPR 127
             W+FFSPRDRKYPNG RPNRAAG+GYWKATG DKPI    G    +G+KKALVFY+G+PP 
Sbjct:    66 WYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPI----GRPKPVGIKKALVFYSGKPPN 121

Query:   128 GAKTDWMMNEYRLADTRIKPSKSKGSMRLDDWVLCRVRHKSNM 170
             G KT+W+M+EYRLAD   +  + K S+RLDDWVLCR+ +K  +
Sbjct:   122 GEKTNWIMHEYRLADVD-RSVRKKNSLRLDDWVLCRIYNKKGV 163

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2090176 NAC3 "NAC domain containing protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 121/245 (49%), Positives = 154/245 (62%)

Query:     3 REHNPAASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQA 62
             +E +P A    PPGFRF+P+D+EL+V YL  K         LIAE+DLYK++PW LP +A
Sbjct:     4 QELDPLAQLSLPPGFRFYPTDEELMVEYLCRKAAGHDFSLQLIAEIDLYKFDPWVLPSKA 63

Query:    63 LFGEDEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYT 122
             LFGE EW+FFSPRDRKYPNG RPNR AGSGYWKATGTDK ++S+ G   +G+KKALVFY 
Sbjct:    64 LFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK-VISTEGR-RVGIKKALVFYI 121

Query:   123 GRPPRGAKTDWMMNEYRLADTRIKPSKSKGSMRLDDWVLCRVRHK-SNMPKSAWEIHNTQ 181
             G+ P+G KT+W+M+EYRL    I+PS+  GS +LDDWVLCR+  K ++  K A+    T 
Sbjct:   122 GKAPKGTKTNWIMHEYRL----IEPSRRNGSTKLDDWVLCRIYKKQTSAQKQAYNNLMTS 177

Query:   182 RAELVNDSPRTEMARPAYVNHNDDMIRDCLTKDCRLLASILAGQ--ALP----PIQTVSS 235
               E  N+   T  +   Y    DD++      D R L    AG   ALP    P+ T   
Sbjct:   178 GREYSNNGSSTSSSSHQY----DDVLESLHEIDNRSLG-FAAGSSNALPHSHRPVLTNHK 232

Query:   236 LSCQG 240
                QG
Sbjct:   233 TGFQG 237

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2198225 ATAF1 [Arabidopsis thaliana (taxid:3702)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 117/254 (46%), Positives = 159/254 (62%)

Query:    12 QFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGEDEWFF 71
             Q PPGFRFHP+D+EL+++YL  K  S+ +   +IAE+DLYKY+PWELP  AL+GE EW+F
Sbjct:     6 QLPPGFRFHPTDEELVMHYLCRKCASQSIAVPIIAEIDLYKYDPWELPGLALYGEKEWYF 65

Query:    72 FSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVN-LGVKKALVFYTGRPPRGAK 130
             FSPRDRKYPNG RPNR+AGSGYWKATG DKPI    G    +G+KKALVFY G+ P+G K
Sbjct:    66 FSPRDRKYPNGSRPNRSAGSGYWKATGADKPI----GLPKPVGIKKALVFYAGKAPKGEK 121

Query:   131 TDWMMNEYRLADTRIKPSKSKGSMRLDDWVLCRVRHKSNMPKSAWEIHNTQRA-ELVNDS 189
             T+W+M+EYRLAD      K K S+RLDDWVLCR+ +K    +            E++ + 
Sbjct:   122 TNWIMHEYRLADVDRSVRKKKNSLRLDDWVLCRIYNKKGATERRGPPPPVVYGDEIMEEK 181

Query:   190 PR-TEMARP---------AYVNHNDDMIRDCLTKDCRLLASILAGQALPPIQTVSSLSCQ 239
             P+ TEM  P         AY + +D + +   T D      +++ +    +Q+       
Sbjct:   182 PKVTEMVMPPPPQQTSEFAYFDTSDSVPK-LHTTDSSCSEQVVSPEFTSEVQSEPKWKDW 240

Query:   240 GS-NNGNNSTPAYG 252
              + +N NN+T  +G
Sbjct:   241 SAVSNDNNNTLDFG 254

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2011531 NAC019 "NAC domain containing protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 102/175 (58%), Positives = 129/175 (73%)

Query:     3 REHNPAASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQA 62
             +E +P      PPGFRF+P+D+EL+V YL  K         LIAE+DLYK++PW LP +A
Sbjct:     4 QETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKA 63

Query:    63 LFGEDEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYT 122
             LFGE EW+FFSPRDRKYPNG RPNR AGSGYWKATGTDK I+S+ G   +G+KKALVFY 
Sbjct:    64 LFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK-IISTEGQ-RVGIKKALVFYI 121

Query:   123 GRPPRGAKTDWMMNEYRLADTRIKPSKSKGSMRLDDWVLCRVRHK-SNMPKSAWE 176
             G+ P+G KT+W+M+EYRL    I+PS+  GS +LDDWVLCR+  K S+  K  ++
Sbjct:   122 GKAPKGTKTNWIMHEYRL----IEPSRRNGSTKLDDWVLCRIYKKQSSAQKQVYD 172

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:504956335 ATAF2 [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 96/160 (60%), Positives = 121/160 (75%)

Query:     9 ASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGEDE 68
             +    P GFRFHP+D+EL+ +YL  K  S  + A +IAE+DLYK+NPWELP+ +L+GE E
Sbjct:     3 SELNLPAGFRFHPTDEELVKFYLCRKCASEQISAPVIAEIDLYKFNPWELPEMSLYGEKE 62

Query:    69 WFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYTGRPPRG 128
             W+FFSPRDRKYPNG RPNRAAG+GYWKATG DKPI        LG+KKALVFY G+ P+G
Sbjct:    63 WYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPK---TLGIKKALVFYAGKAPKG 119

Query:   129 AKTDWMMNEYRLADT-RIKPSKSKGSMRLDDWVLCRVRHK 167
              KT+W+M+EYRLA+  R      K ++RLDDWVLCR+ +K
Sbjct:   120 IKTNWIMHEYRLANVDRSASVNKKNNLRLDDWVLCRIYNK 159

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0008361 "regulation of cell size" evidence=IMP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009620 "response to fungus" evidence=IMP

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0043424 "protein histidine kinase binding" evidence=IPI

TAIR|locus:2160634 NAC102 "NAC domain containing protein 102" [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 96/160 (60%), Positives = 121/160 (75%)

Query:     9 ASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGEDE 68
             A    P GFRFHP+D+EL+ +YL  +  S P+   +IAE+DLYK+NPWELP+ AL+GE E
Sbjct:    46 AELNLPAGFRFHPTDEELVKFYLCRRCASEPINVPVIAEIDLYKFNPWELPEMALYGEKE 105

Query:    69 WFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYTGRPPRG 128
             W+FFS RDRKYPNG RPNRAAG+GYWKATG DKPI        LG+KKALVFY G+ P+G
Sbjct:   106 WYFFSHRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPK---TLGIKKALVFYAGKAPKG 162

Query:   129 AKTDWMMNEYRLADT-RIKPSKSKGSMRLDDWVLCRVRHK 167
              KT+W+M+EYRLA+  R   +  K ++RLDDWVLCR+ +K
Sbjct:   163 IKTNWIMHEYRLANVDRSASTNKKNNLRLDDWVLCRIYNK 202

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0001666 "response to hypoxia" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O49255	NAC29_ARATH	No assigned EC number	0.5242	0.6342	0.8283	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	350
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	4e-73

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  222 bits (568), Expect = 4e-73
 Identities = 85/131 (64%), Positives = 101/131 (77%), Gaps = 3/131 (2%)

Query: 13  FPPGFRFHPSDQELIVYYLQNKVTSRPLPA-SLIAEVDLYKYNPWELPKQALFGED-EWF 70
            PPGFRFHP+D+EL+VYYL+ KV  +PLP   +I EVD+YK+ PW+LP     G D EW+
Sbjct: 1   LPPGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLPDGKAKGGDREWY 60

Query: 71  FFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYTGRPPRGAK 130
           FFSPRDRKYPNG R NRA GSGYWKATG DKP+LS  G   +G+KK LVFY GR P+G K
Sbjct: 61  FFSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSK-GGEVVGMKKTLVFYKGRAPKGEK 119

Query: 131 TDWMMNEYRLA 141
           TDW+M+EYRL 
Sbjct: 120 TDWVMHEYRLE 130

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	350
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=2.2e-44  Score=307.68  Aligned_cols=128  Identities=55%  Similarity=1.169  Sum_probs=97.9

Q ss_pred             CCCCceeCCChHHHHHHHHHHhHcCCCCCC-CceEeccCCCCCCCCcCccccCCCCeEEEeeccCCCCCCCCCCcccCCC
Q 045934           13 FPPGFRFHPSDQELIVYYLQNKVTSRPLPA-SLIAEVDLYKYNPWELPKQALFGEDEWFFFSPRDRKYPNGERPNRAAGS   91 (350)
Q Consensus        13 LPpGfRF~PTDEELV~~YL~~Ki~g~plp~-~vI~evDvy~~~PwdLP~~~~~g~~eWYFFs~r~rK~~~G~R~~Ratg~   91 (350)
                      |||||||+|||+|||.+||++|+.|.+++. .+|+++|||+++||+||+....++++||||+++++++++|.|++|++++
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~~~~~~~~yFF~~~~~~~~~~~r~~R~~~~   80 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKFKGGDEEWYFFSPRKKKYPNGGRPNRVTGG   80 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHSSS-SSEEEEEEE----------S-EEETT
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhccCCCceEEEEEecccccCCcccccccccc
Confidence            899999999999999999999999999887 8999999999999999954444677999999999999999999999999


Q ss_pred             CeEeeecCCccEEcCCCCeeEEEEEEEEEeeCCCCCCCCcCeEEEEEEeC
Q 045934           92 GYWKATGTDKPILSSVGSVNLGVKKALVFYTGRPPRGAKTDWMMNEYRLA  141 (350)
Q Consensus        92 G~WKatG~~k~I~~~~~g~vIG~KktL~Fy~gr~p~g~kT~WvMhEYrL~  141 (350)
                      |+||++|++++|.+. +|.+||+|++|+||.++.+.+.+|+|+||||+|.
T Consensus        81 G~Wk~~g~~~~i~~~-~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   81 GYWKSTGKEKPIKDP-GGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             EEEEEECEEEEEEE--TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             eEEeecccccccccc-cceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            999999999999986 7899999999999998888899999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	350
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		7e-56
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		8e-56
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		2e-55

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  214 bits (544), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 100/167 (59%), Positives = 125/167 (74%), Gaps = 6/167 (3%)
Query: 3   REHNPAASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQA 62
           +E +P      PPGFRF+P+D+EL+V YL  K         LIAE+DLYK++PW LP +A
Sbjct: 10  QETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKA 69
Query: 63  LFGEDEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYT 122
           LFGE EW+FFSPRDRKYPNG RPNR AGSGYWKATGTDK I+S+ G   +G+KKALVFY 
Sbjct: 70  LFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK-IISTEGQ-RVGIKKALVFYI 127
Query: 123 GRPPRGAKTDWMMNEYRLADTRIKPSKSKGSMRLDDWVLCRVRHKSN 169
           G+ P+G KT+W+M+EYRL    I+PS+  GS +LDDWVLCR+  K +
Sbjct: 128 GKAPKGTKTNWIMHEYRL----IEPSRRNGSTKLDDWVLCRIYKKQS 170

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  214 bits (544), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 100/167 (59%), Positives = 125/167 (74%), Gaps = 6/167 (3%)
Query: 3   REHNPAASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQA 62
           +E +P      PPGFRF+P+D+EL+V YL  K         LIAE+DLYK++PW LP +A
Sbjct: 7   QETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKA 66
Query: 63  LFGEDEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYT 122
           LFGE EW+FFSPRDRKYPNG RPNR AGSGYWKATGTDK I+S+ G   +G+KKALVFY 
Sbjct: 67  LFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK-IISTEGQ-RVGIKKALVFYI 124
Query: 123 GRPPRGAKTDWMMNEYRLADTRIKPSKSKGSMRLDDWVLCRVRHKSN 169
           G+ P+G KT+W+M+EYRL    I+PS+  GS +LDDWVLCR+  K +
Sbjct: 125 GKAPKGTKTNWIMHEYRL----IEPSRRNGSTKLDDWVLCRIYKKQS 167

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score =  213 bits (541), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 103/170 (60%), Positives = 125/170 (73%), Gaps = 3/170 (1%)
Query: 1   MEREHNPAASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPK 60
           M RE +  A    PPGFRFHP+D EL+ +YL  K   + LP  +IAEVDLYK++PW+LP+
Sbjct: 3   MRRERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPE 62
Query: 61  QALFGEDEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVF 120
           +ALFG  EW+FF+PRDRKYPNG RPNRAAG+GYWKATG DKP+        LG+KKALVF
Sbjct: 63  RALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPR--GRTLGIKKALVF 120
Query: 121 YTGRPPRGAKTDWMMNEYRL-ADTRIKPSKSKGSMRLDDWVLCRVRHKSN 169
           Y G+ PRG KTDW+M+EYRL    R      KGS+RLDDWVLCR+ +K N
Sbjct: 121 YAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKN 170

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	350
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	1e-100
1ut7_A	171	No apical meristem protein; transcription regulati	5e-99
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  292 bits (749), Expect = e-100
 Identities = 103/170 (60%), Positives = 128/170 (75%), Gaps = 3/170 (1%)

Query: 1   MEREHNPAASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPK 60
           M RE +  A    PPGFRFHP+D EL+ +YL  K   + LP  +IAEVDLYK++PW+LP+
Sbjct: 3   MRRERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPE 62

Query: 61  QALFGEDEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVF 120
           +ALFG  EW+FF+PRDRKYPNG RPNRAAG+GYWKATG DKP+     ++  G+KKALVF
Sbjct: 63  RALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTL--GIKKALVF 120

Query: 121 YTGRPPRGAKTDWMMNEYRLADTRIKPS-KSKGSMRLDDWVLCRVRHKSN 169
           Y G+ PRG KTDW+M+EYRLAD     +   KGS+RLDDWVLCR+ +K N
Sbjct: 121 YAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKN 170

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  289 bits (741), Expect = 5e-99
 Identities = 98/172 (56%), Positives = 122/172 (70%), Gaps = 6/172 (3%)

Query: 1   MEREHNPAASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPK 60
             +E +P      PPGFRF+P+D+EL+V YL  K         LIAE+DLYK++PW LP 
Sbjct: 5   GIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPN 64

Query: 61  QALFGEDEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVF 120
           +ALFGE EW+FFSPRDRKYPNG RPNR AGSGYWKATGTDK I +    V  G+KKALVF
Sbjct: 65  KALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRV--GIKKALVF 122

Query: 121 YTGRPPRGAKTDWMMNEYRLADTRIKPSKSKGSMRLDDWVLCRVRHKSNMPK 172
           Y G+ P+G KT+W+M+EYRL +    PS+  GS +LDDWVLCR+  K +  +
Sbjct: 123 YIGKAPKGTKTNWIMHEYRLIE----PSRRNGSTKLDDWVLCRIYKKQSSAQ 170

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 30/206 (14%), Positives = 60/206 (29%), Gaps = 56/206 (27%)

Query: 138 YRLADT-RIKPSKS-----KGSMRLD-DWVLCRVRHKSNMPKSAWEIHNTQRAELVNDSP 190
            RL  T   K  +      +  +R++  +++  ++ +   P     ++  QR  L ND+ 
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 191 RTEMARPAYVNHNDDM--IRDCLT--KDCRLLA---------SILAGQALPPIQTVSSLS 237
                    V+       +R  L   +  + +          + +A           S  
Sbjct: 125 VF---AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC------LSYK 175

Query: 238 CQGSNNGNNSTPAY----GECAPSGVNSPLTVSSKDTLFNPLKR--KPSEENWCENL--- 288
            Q   +       +      C     NSP      +T+   L++     + NW       
Sbjct: 176 VQCKMDFK----IFWLNLKNC-----NSP------ETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 289 --LPFNKKSICDNKDLDFPLSKALPN 312
             +     SI   +      SK   N
Sbjct: 221 SNIKLRIHSI-QAELRRLLKSKPYEN 245

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	350
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=1.5e-59  Score=421.28  Aligned_cols=167  Identities=62%  Similarity=1.222  Sum_probs=139.1

Q ss_pred             CCCCCCCCCCCCCCCCceeCCChHHHHHHHHHHhHcCCCCCCCceEeccCCCCCCCCcCccccCCCCeEEEeeccCCCCC
Q 045934            1 MEREHNPAASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGEDEWFFFSPRDRKYP   80 (350)
Q Consensus         1 Me~~~~~~~~~~LPpGfRF~PTDEELV~~YL~~Ki~g~plp~~vI~evDvy~~~PwdLP~~~~~g~~eWYFFs~r~rK~~   80 (350)
                      |+..++....+.|||||||+|||||||.|||++|+.|.++|..+|+++|||++|||+||+.+..|+.+|||||++++||+
T Consensus         3 ~~~~~~~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~   82 (174)
T 3ulx_A            3 MRRERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYP   82 (174)
T ss_dssp             ------CCSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC---
T ss_pred             cccccccccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccC
Confidence            56777777889999999999999999999999999999999999999999999999999999888999999999999999


Q ss_pred             CCCCCcccCCCCeEeeecCCccEEcCCCCeeEEEEEEEEEeeCCCCCCCCcCeEEEEEEeCCCCCCCC-CCCCCCcCCce
Q 045934           81 NGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYTGRPPRGAKTDWMMNEYRLADTRIKPS-KSKGSMRLDDW  159 (350)
Q Consensus        81 ~G~R~~Ratg~G~WKatG~~k~I~~~~~g~vIG~KktL~Fy~gr~p~g~kT~WvMhEYrL~~~~~~~~-~~~~~~~~~e~  159 (350)
                      +|.|++|+|++||||++|++++|.+.  |.+||+||+|+||.|++|+|.||+|+||||+|.+....+. ...+.+..++|
T Consensus        83 ~g~R~nR~t~~G~WkatG~dk~I~~~--g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~w  160 (174)
T 3ulx_A           83 NGSRPNRAAGNGYWKATGADKPVAPR--GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDW  160 (174)
T ss_dssp             --CCSCEEETTEEEEECSCCEEECCS--SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSE
T ss_pred             CCCCceeecCCceEccCCCCcEEeeC--CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCE
Confidence            99999999999999999999999864  7899999999999999999999999999999988743321 12234567899


Q ss_pred             EEEEEEecCC
Q 045934          160 VLCRVRHKSN  169 (350)
Q Consensus       160 VLCRIy~k~~  169 (350)
                      ||||||+|+.
T Consensus       161 VlCrvf~K~~  170 (174)
T 3ulx_A          161 VLCRLYNKKN  170 (174)
T ss_dssp             EEEEEEESCC
T ss_pred             EEEEEEEcCC
Confidence            9999999864

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=1.9e-58  Score=413.32  Aligned_cols=164  Identities=57%  Similarity=1.121  Sum_probs=136.7

Q ss_pred             CCCCCCC-CCCCCCCCCceeCCChHHHHHHHHHHhHcCCCCCCCceEeccCCCCCCCCcCccccCCCCeEEEeeccCCCC
Q 045934            1 MEREHNP-AASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGEDEWFFFSPRDRKY   79 (350)
Q Consensus         1 Me~~~~~-~~~~~LPpGfRF~PTDEELV~~YL~~Ki~g~plp~~vI~evDvy~~~PwdLP~~~~~g~~eWYFFs~r~rK~   79 (350)
                      |+..+++ ..++.|||||||+|||||||.|||++|+.|.+++..+|+++|||++|||+||+.+..++.+|||||++++||
T Consensus         4 m~~~~~~~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~   83 (171)
T 1ut7_A            4 MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKY   83 (171)
T ss_dssp             CCCC----CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC--
T ss_pred             cccccCCcccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEecccccc
Confidence            6666654 478999999999999999999999999999999999999999999999999999888899999999999999


Q ss_pred             CCCCCCcccCCCCeEeeecCCccEEcCCCCeeEEEEEEEEEeeCCCCCCCCcCeEEEEEEeCCCCCCCCCCCCCCcCCce
Q 045934           80 PNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYTGRPPRGAKTDWMMNEYRLADTRIKPSKSKGSMRLDDW  159 (350)
Q Consensus        80 ~~G~R~~Ratg~G~WKatG~~k~I~~~~~g~vIG~KktL~Fy~gr~p~g~kT~WvMhEYrL~~~~~~~~~~~~~~~~~e~  159 (350)
                      ++|.|++|+|++||||++|++++|.+.  +.+||+||+|+||.|++|++.||+|+||||+|......    .+....++|
T Consensus        84 ~~g~R~~R~t~~G~Wk~tG~~k~I~~~--~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~----~~~~~~~~~  157 (171)
T 1ut7_A           84 PNGSRPNRVAGSGYWKATGTDKIISTE--GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRR----NGSTKLDDW  157 (171)
T ss_dssp             -----CCEEETTEEEEEEEEEEEEEET--TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC------------CCE
T ss_pred             CCCCcccccCCCCEEeccCCCceEEec--CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccc----cCcccCCCE
Confidence            999999999999999999999999974  69999999999999999999999999999999876421    123356899


Q ss_pred             EEEEEEecCCC
Q 045934          160 VLCRVRHKSNM  170 (350)
Q Consensus       160 VLCRIy~k~~~  170 (350)
                      ||||||+|...
T Consensus       158 VlCrv~~k~~~  168 (171)
T 1ut7_A          158 VLCRIYKKQSS  168 (171)
T ss_dssp             EEEEEEECC--
T ss_pred             EEEEEEEcCCC
Confidence            99999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	350
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	3e-72

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  219 bits (560), Expect = 3e-72
 Identities = 98/166 (59%), Positives = 120/166 (72%), Gaps = 6/166 (3%)

Query: 2   EREHNPAASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQ 61
            +E +P      PPGFRF+P+D+EL+V YL  K         LIAE+DLYK++PW LP +
Sbjct: 6   IQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNK 65

Query: 62  ALFGEDEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFY 121
           ALFGE EW+FFSPRDRKYPNG RPNR AGSGYWKATGTDK I  S     +G+KKALVFY
Sbjct: 66  ALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII--STEGQRVGIKKALVFY 123

Query: 122 TGRPPRGAKTDWMMNEYRLADTRIKPSKSKGSMRLDDWVLCRVRHK 167
            G+ P+G KT+W+M+EYRL +    PS+  GS +LDDWVLCR+  K
Sbjct: 124 IGKAPKGTKTNWIMHEYRLIE----PSRRNGSTKLDDWVLCRIYKK 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	350
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=5.3e-55  Score=386.43  Aligned_cols=162  Identities=58%  Similarity=1.137  Sum_probs=135.1

Q ss_pred             CCCCCCCC-CCCCCCCCceeCCChHHHHHHHHHHhHcCCCCCCCceEeccCCCCCCCCcCccccCCCCeEEEeeccCCCC
Q 045934            1 MEREHNPA-ASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGEDEWFFFSPRDRKY   79 (350)
Q Consensus         1 Me~~~~~~-~~~~LPpGfRF~PTDEELV~~YL~~Ki~g~plp~~vI~evDvy~~~PwdLP~~~~~g~~eWYFFs~r~rK~   79 (350)
                      |+.++... .++.|||||||+|||||||.|||++|+.|.++|..+|+++|||+++||+||+.+..++++||||+++.+++
T Consensus         4 ~~~~~~~~~~~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~~~~~wyFft~~~~k~   83 (166)
T d1ut7a_           4 MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKY   83 (166)
T ss_dssp             CCCC----CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC--
T ss_pred             ccccccCccccccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhccCcceEEEEeeecccc
Confidence            77776554 88999999999999999999999999999999999999999999999999998888899999999999999


Q ss_pred             CCCCCCcccCCCCeEeeecCCccEEcCCCCeeEEEEEEEEEeeCCCCCCCCcCeEEEEEEeCCCCCCCCCCCCCCcCCce
Q 045934           80 PNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYTGRPPRGAKTDWMMNEYRLADTRIKPSKSKGSMRLDDW  159 (350)
Q Consensus        80 ~~G~R~~Ratg~G~WKatG~~k~I~~~~~g~vIG~KktL~Fy~gr~p~g~kT~WvMhEYrL~~~~~~~~~~~~~~~~~e~  159 (350)
                      ++|.|++|++++|+||++|+++.|.+  +|.+||+||+|+||.++++.+.+|+|+||||+|.+....    .+....++|
T Consensus        84 ~~g~r~~R~~g~G~Wk~~g~~~~i~~--~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~----~~~~~~~~~  157 (166)
T d1ut7a_          84 PNGSRPNRVAGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRR----NGSTKLDDW  157 (166)
T ss_dssp             -----CCEEETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC------------CCE
T ss_pred             CCCCccccccCCCEecccCCCceEec--CCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcccc----cCccccCCE
Confidence            99999999999999999999998876  578999999999999999999999999999999876432    233456899


Q ss_pred             EEEEEEecC
Q 045934          160 VLCRVRHKS  168 (350)
Q Consensus       160 VLCRIy~k~  168 (350)
                      ||||||+|.
T Consensus       158 VLCrI~~Kk  166 (166)
T d1ut7a_         158 VLCRIYKKQ  166 (166)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEecC
Confidence            999999874