Citrus Sinensis ID: 045940

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
MGKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNARDLLQGMEVPNLLPSNQ
cccccEEEEEccccccccHHHHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHcccEEEEEcccccccccccccccccEEEcccHHHHHHHHHHHccEEEEcccccccHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHcccccccccccEEEcccHHHHHHHHcccccccccc
cccccEEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHHcccEEEEEEcHHHcHHHHccccccEEEEEccHHHHHHHHHHHcccEEEcccccccHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHHcccccHHHHHEEEEcccHHHHHHHHHHcccccccc
mgkfkrvcvfcgsnsgnrkiFSDAALDLATQLVERKINLVYGGGSVGLMGLVSqtifdggchvlgvipkalvpieisgqtvGDVLIVSDMHERKAEMARRADAFIalpggygtMEELLEMITWSqlgihdkpvgvlnvdgYYDSLLRFFDKGVEEGFIKSSARNIVISAKNARDLlqgmevpnllpsnq
MGKFKRVCVFcgsnsgnrkiFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNArdllqgmevpnllpsnq
MGKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINlvygggsvglmglvSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNARDLLQGMEVPNLLPSNQ
***FKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNA*****************
**KFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNARDLLQGMEV*N******
MGKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNARDLLQGMEVPNLLPSNQ
**KFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNARDLLQGMEVPNLL****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNARDLLQGMEVPNLLPSNQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query189 2.2.26 [Sep-21-2011]
Q8LR50223 Probable cytokinin ribosi yes no 0.947 0.802 0.748 9e-77
Q84MC2216 Cytokinin riboside 5'-mon yes no 0.941 0.824 0.719 1e-75
Q5BPS0213 Cytokinin riboside 5'-mon no no 0.941 0.835 0.702 6e-73
Q8RUN2213 Cytokinin riboside 5'-mon no no 0.941 0.835 0.674 3e-72
B9F166244 Probable cytokinin ribosi no no 0.941 0.729 0.679 3e-71
Q8GW29217 Cytokinin riboside 5'-mon no no 0.941 0.820 0.679 1e-70
Q8L8B8215 Cytokinin riboside 5'-mon no no 0.941 0.827 0.662 1e-70
Q9LFH3215 Cytokinin riboside 5'-mon no no 0.941 0.827 0.679 1e-70
Q8LBB7228 Cytokinin riboside 5'-mon no no 0.941 0.780 0.674 2e-70
Q5TKP8223 Probable cytokinin ribosi no no 0.941 0.798 0.685 3e-70
>sp|Q8LR50|LOGL1_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL1 OS=Oryza sativa subsp. japonica GN=LOGL1 PE=2 SV=1 Back     alignment and function desciption
 Score =  285 bits (730), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 134/179 (74%), Positives = 153/179 (85%)

Query: 2   GKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGC 61
           G+F R+CVFCGSN+GNR +F DAAL L  +LV R I LVYGGGSVGLMGL++QT+ DGGC
Sbjct: 16  GRFGRICVFCGSNAGNRAVFGDAALQLGQELVSRGIELVYGGGSVGLMGLIAQTVLDGGC 75

Query: 62  HVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAFIALPGGYGTMEELLEMI 121
            VLGVIPKAL+P EISG +VG+V IVSDMHERKAEMAR++DAFIALPGGYGTMEELLEMI
Sbjct: 76  GVLGVIPKALMPTEISGASVGEVKIVSDMHERKAEMARQSDAFIALPGGYGTMEELLEMI 135

Query: 122 TWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNARDLLQGME 180
           TWSQLGIHDKPVG+LNVDGYYD LL  FDKG  EGFIK+  R I++SA  A +LL+ ME
Sbjct: 136 TWSQLGIHDKPVGLLNVDGYYDPLLALFDKGAAEGFIKADCRQIIVSAPTAHELLRKME 194
Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 3EC: .EC: 2EC: .EC: 2EC: .EC: nEC: 1
>sp|Q84MC2|LOG8_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 OS=Arabidopsis thaliana GN=LOG8 PE=1 SV=1 Back     alignment and function description
>sp|Q5BPS0|LOG2_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG2 OS=Arabidopsis thaliana GN=LOG2 PE=1 SV=1 Back     alignment and function description
>sp|Q8RUN2|LOG1_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1 OS=Arabidopsis thaliana GN=LOG1 PE=1 SV=1 Back     alignment and function description
>sp|B9F166|LOGL2_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL2 OS=Oryza sativa subsp. japonica GN=LOGL2 PE=3 SV=1 Back     alignment and function description
>sp|Q8GW29|LOG7_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 OS=Arabidopsis thaliana GN=LOG7 PE=1 SV=2 Back     alignment and function description
>sp|Q8L8B8|LOG3_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 OS=Arabidopsis thaliana GN=LOG3 PE=1 SV=1 Back     alignment and function description
>sp|Q9LFH3|LOG4_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG4 OS=Arabidopsis thaliana GN=LOG4 PE=1 SV=1 Back     alignment and function description
>sp|Q8LBB7|LOG5_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5 OS=Arabidopsis thaliana GN=LOG5 PE=1 SV=1 Back     alignment and function description
>sp|Q5TKP8|LOGL7_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL7 OS=Oryza sativa subsp. japonica GN=LOGL7 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query189
224052930199 predicted protein [Populus trichocarpa] 1.0 0.949 0.803 4e-85
224073162198 predicted protein [Populus trichocarpa] 0.952 0.909 0.85 7e-85
359478461205 PREDICTED: cytokinin riboside 5'-monopho 0.952 0.878 0.822 1e-83
225429494217 PREDICTED: cytokinin riboside 5'-monopho 0.941 0.820 0.803 2e-80
147838657201 hypothetical protein VITISV_022865 [Viti 0.931 0.875 0.794 9e-79
449447134216 PREDICTED: cytokinin riboside 5'-monopho 0.941 0.824 0.786 5e-78
224092166217 predicted protein [Populus trichocarpa] 0.978 0.852 0.737 2e-77
357437379214 Lysine decarboxylase-like protein [Medic 0.978 0.864 0.743 2e-77
356564041216 PREDICTED: cytokinin riboside 5'-monopho 0.947 0.828 0.754 3e-77
255550077217 carboxy-lyase, putative [Ricinus communi 0.936 0.815 0.762 6e-77
>gi|224052930|ref|XP_002297635.1| predicted protein [Populus trichocarpa] gi|222844893|gb|EEE82440.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  319 bits (817), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 155/193 (80%), Positives = 172/193 (89%), Gaps = 4/193 (2%)

Query: 1   MGKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGG 60
           MGKF RVCVFCGS SGN+KIFSDAALDL  QLVERK++LVYGGGSVGLMGLVSQT++DGG
Sbjct: 1   MGKFTRVCVFCGSKSGNKKIFSDAALDLGRQLVERKMDLVYGGGSVGLMGLVSQTVYDGG 60

Query: 61  CHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAFIALPGGYGTMEELLEM 120
            HVLG+IP ALVPIEISG+TVG+VLIVSDMHERKAEMARRADAFIALPGGYGT EELLEM
Sbjct: 61  SHVLGIIPTALVPIEISGETVGEVLIVSDMHERKAEMARRADAFIALPGGYGTFEELLEM 120

Query: 121 ITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNARDLLQGME 180
           ITWSQLGIH+KPVG+LNVDGYYDSLL  FDK VEEGF+ +SARNIV+SA+ AR+L+Q ME
Sbjct: 121 ITWSQLGIHNKPVGLLNVDGYYDSLLGLFDKSVEEGFVNASARNIVVSARTARELIQRME 180

Query: 181 ----VPNLLPSNQ 189
               V   + SNQ
Sbjct: 181 DYIPVHEQVTSNQ 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224073162|ref|XP_002304002.1| predicted protein [Populus trichocarpa] gi|222841434|gb|EEE78981.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359478461|ref|XP_002285716.2| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8-like [Vitis vinifera] gi|297746467|emb|CBI16523.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225429494|ref|XP_002278305.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Vitis vinifera] gi|147857102|emb|CAN81797.1| hypothetical protein VITISV_043338 [Vitis vinifera] gi|296081637|emb|CBI20642.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147838657|emb|CAN65050.1| hypothetical protein VITISV_022865 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449447134|ref|XP_004141324.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8-like [Cucumis sativus] gi|449524597|ref|XP_004169308.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224092166|ref|XP_002309490.1| predicted protein [Populus trichocarpa] gi|222855466|gb|EEE93013.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357437379|ref|XP_003588965.1| Lysine decarboxylase-like protein [Medicago truncatula] gi|355478013|gb|AES59216.1| Lysine decarboxylase-like protein [Medicago truncatula] gi|388514577|gb|AFK45350.1| unknown [Medicago truncatula] gi|388516925|gb|AFK46524.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356564041|ref|XP_003550265.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8-like [Glycine max] Back     alignment and taxonomy information
>gi|255550077|ref|XP_002516089.1| carboxy-lyase, putative [Ricinus communis] gi|223544575|gb|EEF46091.1| carboxy-lyase, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query189
TAIR|locus:2143029216 LOG8 "LONELY GUY 8" [Arabidops 0.941 0.824 0.646 9e-61
TAIR|locus:2039175213 LOG2 "AT2G35990" [Arabidopsis 0.941 0.835 0.629 8.4e-58
TAIR|locus:2828223213 LOG1 "AT2G28305" [Arabidopsis 0.941 0.835 0.606 1.7e-57
TAIR|locus:2084051215 LOG4 "AT3G53450" [Arabidopsis 0.941 0.827 0.606 4.2e-56
TAIR|locus:2164280217 LOG7 "AT5G06300" [Arabidopsis 0.941 0.820 0.601 6.8e-56
TAIR|locus:2132821228 LOG5 "AT4G35190" [Arabidopsis 0.941 0.780 0.601 1.1e-55
TAIR|locus:2143473201 LOG6 "AT5G03270" [Arabidopsis 0.941 0.885 0.595 3.4e-54
UNIPROTKB|Q5ZC82242 LOG "Cytokinin riboside 5'-mon 0.941 0.735 0.573 1.9e-51
TIGR_CMR|GSU_2766196 GSU_2766 "decarboxylase family 0.936 0.903 0.457 1.3e-36
TAIR|locus:2180672143 LOG9 "AT5G26140" [Arabidopsis 0.560 0.741 0.719 8.3e-35
TAIR|locus:2143029 LOG8 "LONELY GUY 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 115/178 (64%), Positives = 147/178 (82%)

Query:     3 KFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINXXXXXXXXXXXXXXSQTIFDGGCH 62
             +F+++CVFCGS+SG+R++FSDAA++L  +LV+RKI+              S+ +++GG H
Sbjct:     8 RFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGLH 67

Query:    63 VLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAFIALPGGYGTMEELLEMIT 122
             VLG+IPKAL+PIEISG+TVGDV +V+DMHERKA MA+ A+AFIALPGGYGTMEELLEMIT
Sbjct:    68 VLGIIPKALMPIEISGETVGDVRVVADMHERKAAMAQEAEAFIALPGGYGTMEELLEMIT 127

Query:   123 WSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNARDLLQGME 180
             WSQLGIH K VG+LNVDGYY++LL  FD GVEEGFIK  ARNIV+SA  A++L++ ME
Sbjct:   128 WSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELMEKME 185
GO:0005737 "cytoplasm" evidence=ISM
GO:0042803 "protein homodimerization activity" evidence=IDA
GO:0005634 "nucleus" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2039175 LOG2 "AT2G35990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2828223 LOG1 "AT2G28305" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084051 LOG4 "AT3G53450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164280 LOG7 "AT5G06300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132821 LOG5 "AT4G35190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143473 LOG6 "AT5G03270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZC82 LOG "Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2766 GSU_2766 "decarboxylase family protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TAIR|locus:2180672 LOG9 "AT5G26140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84MC2LOG8_ARATH3, ., 2, ., 2, ., n, 10.71910.94170.8240yesno
O06986YVDD_BACSUNo assigned EC number0.39770.93120.9214yesno
P48636Y4923_PSEAENo assigned EC number0.44860.96820.9384yesno
Q8LR50LOGL1_ORYSJ3, ., 2, ., 2, ., n, 10.74860.94700.8026yesno
Q5BPS0LOG2_ARATH3, ., 2, ., 2, ., n, 10.70220.94170.8356nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.2.n10.946
3rd Layer3.2.20.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query189
pfam03641130 pfam03641, Lysine_decarbox, Possible lysine decarb 1e-62
TIGR00730178 TIGR00730, TIGR00730, TIGR00730 family protein 1e-56
COG1611205 COG1611, COG1611, Predicted Rossmann fold nucleoti 2e-44
TIGR00725159 TIGR00725, TIGR00725, TIGR00725 family protein 2e-05
>gnl|CDD|217655 pfam03641, Lysine_decarbox, Possible lysine decarboxylase Back     alignment and domain information 
 Score =  189 bits (483), Expect = 1e-62
 Identities = 68/129 (52%), Positives = 90/129 (69%)

Query: 49  MGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAFIALP 108
           MG V+    + G  V+G+IP  L P EI    V +++IV DMHERKA MAR ADAF+ALP
Sbjct: 1   MGAVADGALEAGGRVIGIIPNILAPEEIPNPIVTELIIVPDMHERKAAMARLADAFVALP 60

Query: 109 GGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVIS 168
           GG+GT+EEL E++TW QLGIH KP+ +LN +GYYD LL F D  VEEGFI  +AR ++I 
Sbjct: 61  GGFGTLEELFEILTWIQLGIHQKPIILLNPNGYYDPLLEFIDHMVEEGFISPAARELIIV 120

Query: 169 AKNARDLLQ 177
             +  + ++
Sbjct: 121 VDDPEEAVE 129

The members of this family share a highly conserved motif PGGXGTXXE that is probably functionally important. This family includes proteins annotated as lysine decarboxylases, although the evidence for this is not clear. Length = 130
>gnl|CDD|129813 TIGR00730, TIGR00730, TIGR00730 family protein Back     alignment and domain information
>gnl|CDD|224527 COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|129808 TIGR00725, TIGR00725, TIGR00725 family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 189
TIGR00730178 conserved hypothetical protein, DprA/Smf-related, 100.0
COG1611205 Predicted Rossmann fold nucleotide-binding protein 100.0
TIGR00725159 conserved hypothetical protein, DprA/Smf-related, 100.0
PF03641133 Lysine_decarbox: Possible lysine decarboxylase; In 100.0
TIGR00732220 dprA DNA protecting protein DprA. Disruption of th 99.73
PF02481212 DNA_processg_A: DNA recombination-mediator protein 99.48
PRK10736374 hypothetical protein; Provisional 99.44
COG0758350 Smf Predicted Rossmann fold nucleotide-binding pro 99.25
PF12694145 MoCo_carrier: Putative molybdenum carrier; InterPr 97.43
PF05014113 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer 95.81
PF13528318 Glyco_trans_1_3: Glycosyl transferase family 1 95.74
TIGR01133348 murG undecaprenyldiphospho-muramoylpentapeptide be 95.07
PF06908177 DUF1273: Protein of unknown function (DUF1273); In 94.98
PF11071141 DUF2872: Protein of unknown function (DUF2872); In 94.98
COG0707357 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosami 94.01
TIGR03646144 YtoQ_fam YtoQ family protein. Members of this fami 93.87
cd03785350 GT1_MurG MurG is an N-acetylglucosaminyltransferas 93.77
COG3660329 Predicted nucleoside-diphosphate-sugar epimerase [ 93.48
PRK10565 508 putative carbohydrate kinase; Provisional 93.44
TIGR01426392 MGT glycosyltransferase, MGT family. This model de 93.32
PRK13609380 diacylglycerol glucosyltransferase; Provisional 93.26
PRK13660182 hypothetical protein; Provisional 92.1
PF1068671 DUF2493: Protein of unknown function (DUF2493); In 92.06
PF06258311 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterP 91.94
PRK13608391 diacylglycerol glucosyltransferase; Provisional 91.8
PRK12446352 undecaprenyldiphospho-muramoylpentapeptide beta-N- 91.62
PRK00025380 lpxB lipid-A-disaccharide synthase; Reviewed 91.49
KOG3614 1381 consensus Ca2+/Mg2+-permeable cation channels (LTR 91.45
TIGR00215385 lpxB lipid-A-disaccharide synthase. Lipid-A precur 91.27
PLN02605382 monogalactosyldiacylglycerol synthase 91.23
cd03784401 GT1_Gtf_like This family includes the Gtfs, a grou 90.71
PF04101167 Glyco_tran_28_C: Glycosyltransferase family 28 C-t 89.56
COG1597301 LCB5 Sphingosine kinase and enzymes related to euk 88.96
TIGR03590279 PseG pseudaminic acid biosynthesis-associated prot 88.16
TIGR00661321 MJ1255 conserved hypothetical protein. This model 87.74
cd03786363 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of th 86.8
PRK00726357 murG undecaprenyldiphospho-muramoylpentapeptide be 85.93
COG4671400 Predicted glycosyl transferase [General function p 85.91
PRK05749425 3-deoxy-D-manno-octulosonic-acid transferase; Revi 85.39
PRK03372306 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 82.96
COG2185143 Sbm Methylmalonyl-CoA mutase, C-terminal domain/su 82.62
COG3613172 Nucleoside 2-deoxyribosyltransferase [Nucleotide t 80.51
PRK04539296 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 80.47
COG1819406 Glycosyl transferases, related to UDP-glucuronosyl 80.17
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2 Back     alignment and domain information 
Probab=100.00  E-value=1.6e-57  Score=363.64  Aligned_cols=178  Identities=41%  Similarity=0.780  Sum_probs=171.1

Q ss_pred             eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEEecCccccccccCCCCceE
Q 045940            5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDV   84 (189)
Q Consensus         5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~~~   84 (189)
                      ++|||||||+.+++++|++.|++||++||++|+.||||||..|+|+|+++||+++||+|+||+|..+...+.+++.++++
T Consensus         1 ~~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~   80 (178)
T TIGR00730         1 KTVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTEL   80 (178)
T ss_pred             CEEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCce
Confidence            58999999999999999999999999999999999999994499999999999999999999998887777778888899


Q ss_pred             EecCCHHHHHHHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccC
Q 045940           85 LIVSDMHERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARN  164 (189)
Q Consensus        85 ~~~~~~~~R~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~  164 (189)
                      +.+++|++||.+|++.||+||+||||+|||+|++++|+|.|+++|+||++++|.+|||+++++|+++|+++||++++..+
T Consensus        81 i~~~~~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~  160 (178)
T TIGR00730        81 IEVNGMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLK  160 (178)
T ss_pred             EEECCHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEeCCHHHHHHHhhcC
Q 045940          165 IVISAKNARDLLQGMEVP  182 (189)
Q Consensus       165 ~i~~~~~~ee~~~~l~~~  182 (189)
                      .+++++|++|++++|++|
T Consensus       161 ~~~~~d~~~e~~~~i~~~  178 (178)
T TIGR00730       161 LIHVVSRPDELIEQVQNY  178 (178)
T ss_pred             cEEEcCCHHHHHHHHHhC
Confidence            999999999999999764

This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1 Back     alignment and domain information
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway Back     alignment and domain information
>TIGR00732 dprA DNA protecting protein DprA Back     alignment and domain information
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins Back     alignment and domain information
>PRK10736 hypothetical protein; Provisional Back     alignment and domain information
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion] Back     alignment and domain information
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices Back     alignment and domain information
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2 Back     alignment and domain information
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1 Back     alignment and domain information
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase Back     alignment and domain information
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain Back     alignment and domain information
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis Back     alignment and domain information
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03646 YtoQ_fam YtoQ family protein Back     alignment and domain information
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis Back     alignment and domain information
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK10565 putative carbohydrate kinase; Provisional Back     alignment and domain information
>TIGR01426 MGT glycosyltransferase, MGT family Back     alignment and domain information
>PRK13609 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>PRK13660 hypothetical protein; Provisional Back     alignment and domain information
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61 Back     alignment and domain information
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins Back     alignment and domain information
>PRK13608 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed Back     alignment and domain information
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed Back     alignment and domain information
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>TIGR00215 lpxB lipid-A-disaccharide synthase Back     alignment and domain information
>PLN02605 monogalactosyldiacylglycerol synthase Back     alignment and domain information
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin Back     alignment and domain information
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only] Back     alignment and domain information
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG Back     alignment and domain information
>TIGR00661 MJ1255 conserved hypothetical protein Back     alignment and domain information
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc) Back     alignment and domain information
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional Back     alignment and domain information
>COG4671 Predicted glycosyl transferase [General function prediction only] Back     alignment and domain information
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed Back     alignment and domain information
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism] Back     alignment and domain information
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query189
2a33_A215 X-Ray Structure Of A Lysine Decarboxylase-Like Prot 1e-60
1ydh_A216 X-Ray Structure Of A Lysine Decarboxylase-Like Prot 2e-58
1t35_A191 Crystal Structure Of A Hypothetical Protein Yvdd- A 5e-28
3qua_A199 Crystal Structure Of A Putative Uncharacterized Pro 4e-24
3sbx_A189 Crystal Structure Of A Putative Uncharacterized Pro 5e-18
1wek_A217 Crystal Structure Of The Conserved Hypothetical Pro 2e-04
2pmb_A 462 Crystal Structure Of Predicted Nucleotide-binding P 5e-04
>pdb|2A33|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein From Arabidopsis Thaliana Gene At2g37210 Length = 215 Back     alignment and structure 
Iteration: 1

 Score =  228 bits (582), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 104/178 (58%), Positives = 136/178 (76%)
Query: 3   KFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINXXXXXXXXXXXXXXSQTIFDGGCH 62
           KF+R+CVFCGS+ G +  + DAA+DL  +LV R I+              SQ + DGG H
Sbjct: 12  KFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGSIGLXGLVSQAVHDGGRH 71
Query: 63  VLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAFIALPGGYGTMEELLEMIT 122
           V+G+IPK L P E++G+TVG+V  V+D H+RKAE A+ +DAFIALPGGYGT+EELLE+IT
Sbjct: 72  VIGIIPKTLXPRELTGETVGEVRAVADXHQRKAEXAKHSDAFIALPGGYGTLEELLEVIT 131
Query: 123 WSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNARDLLQGME 180
           W+QLGIHDKPVG+LNVDGYY+SLL F DK VEEGFI  +AR I++SA  A++L++ +E
Sbjct: 132 WAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPTAKELVKKLE 189
>pdb|1YDH|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein From Arabidopsis Thaliana Gene At5g11950 Length = 216 Back     alignment and structure
>pdb|1T35|A Chain A, Crystal Structure Of A Hypothetical Protein Yvdd- A Putative Lysine Decarboxylase Length = 191 Back     alignment and structure
>pdb|3QUA|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein And Possible Molybdenum Cofactor Protein From Mycobacterium Smegmatis Length = 199 Back     alignment and structure
>pdb|3SBX|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein From Mycobacterium Marinum Bound To Adenosine 5'-Monophosphate Amp Length = 189 Back     alignment and structure
>pdb|1WEK|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein Tt1465 From Thermus Thermophilus Hb8 Length = 217 Back     alignment and structure
>pdb|2PMB|A Chain A, Crystal Structure Of Predicted Nucleotide-binding Protein From Vibrio Cholerae Length = 462 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query189
1ydh_A216 AT5G11950; structural genomics, protein structure 1e-103
2a33_A215 Hypothetical protein; structural genomics, protein 1e-102
1t35_A191 Hypothetical protein YVDD, putative lysine decarbo 1e-101
3qua_A199 Putative uncharacterized protein; structural genom 1e-97
3sbx_A189 Putative uncharacterized protein; structural genom 9e-97
1weh_A171 Conserved hypothetical protein TT1887; rossman fol 2e-59
1rcu_A195 Conserved hypothetical protein VT76; structural ge 1e-57
1wek_A217 Hypothetical protein TT1465; rossman fold, structu 3e-55
2iz6_A176 Molybdenum cofactor carrier protein; metal transpo 9e-48
3bq9_A 460 Predicted rossmann fold nucleotide-binding domain 2e-24
3gh1_A 462 Predicted nucleotide-binding protein; structural g 1e-23
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A Length = 216 Back     alignment and structure
 Score =  294 bits (754), Expect = e-103
 Identities = 128/180 (71%), Positives = 161/180 (89%)

Query: 1   MGKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGG 60
             +F+++CVFCGS+SG+R++FSDAA++L  +LV+RKI+LVYGGGSVGLMGL+S+ +++GG
Sbjct: 6   RSRFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGG 65

Query: 61  CHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAFIALPGGYGTMEELLEM 120
            HVLG+IPKAL+PIEISG+TVGDV +V+DMHERKA MA+ A+AFIALPGGYGTMEELLEM
Sbjct: 66  LHVLGIIPKALMPIEISGETVGDVRVVADMHERKAAMAQEAEAFIALPGGYGTMEELLEM 125

Query: 121 ITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNARDLLQGME 180
           ITWSQLGIH K VG+LNVDGYY++LL  FD GVEEGFIK  ARNIV+SA  A++L++ ME
Sbjct: 126 ITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELMEKME 185
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A Length = 215 Back     alignment and structure
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1 Length = 191 Back     alignment and structure
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str} Length = 199 Back     alignment and structure
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M} Length = 189 Back     alignment and structure
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1 Length = 171 Back     alignment and structure
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1 Length = 195 Back     alignment and structure
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1 Length = 217 Back     alignment and structure
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A Length = 176 Back     alignment and structure
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica} Length = 460 Back     alignment and structure
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A Length = 462 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query189
1ydh_A216 AT5G11950; structural genomics, protein structure 100.0
3sbx_A189 Putative uncharacterized protein; structural genom 100.0
3qua_A199 Putative uncharacterized protein; structural genom 100.0
1t35_A191 Hypothetical protein YVDD, putative lysine decarbo 100.0
2a33_A215 Hypothetical protein; structural genomics, protein 100.0
1wek_A217 Hypothetical protein TT1465; rossman fold, structu 100.0
1weh_A171 Conserved hypothetical protein TT1887; rossman fol 100.0
3gh1_A 462 Predicted nucleotide-binding protein; structural g 100.0
1rcu_A195 Conserved hypothetical protein VT76; structural ge 100.0
3bq9_A 460 Predicted rossmann fold nucleotide-binding domain 100.0
2iz6_A176 Molybdenum cofactor carrier protein; metal transpo 100.0
3maj_A382 DNA processing chain A; MCSG, PSI-2, structural ge 99.54
3uqz_A288 DNA processing protein DPRA; SAM and rossmann fold 99.5
3imk_A158 Putative molybdenum carrier protein; YP_461806.1, 97.97
2nx2_A181 Hypothetical protein YPSA; structural genomics, un 97.93
2f62_A161 Nucleoside 2-deoxyribosyltransferase; SGPP, struct 96.47
2khz_A165 C-MYC-responsive protein RCL; flexible loop, nucle 96.05
3ehd_A162 Uncharacterized conserved protein; PSI,MCSG,PF0501 95.99
2o6l_A170 UDP-glucuronosyltransferase 2B7; drug metabolism, 95.6
1f8y_A157 Nucleoside 2-deoxyribosyltransferase; active site, 93.79
3s2u_A365 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape 93.09
4fyk_A152 Deoxyribonucleoside 5'-monophosphate N-glycosidas; 93.06
3otg_A412 CALG1; calicheamicin, TDP, structural genomics, PS 92.73
3rsc_A415 CALG2; TDP, enediyne, structural genomics, PSI-2, 92.28
2p6p_A384 Glycosyl transferase; X-RAY-diffraction,urdamycina 92.18
1rrv_A416 Glycosyltransferase GTFD; GT-B, glycosyltransferas 91.84
2jzc_A224 UDP-N-acetylglucosamine transferase subunit ALG13; 91.8
3hbm_A282 UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter je 91.78
2iya_A424 OLEI, oleandomycin glycosyltransferase; carbohydra 91.43
3h4t_A404 Glycosyltransferase GTFA, glycosyltransferase; van 91.39
1iir_A415 Glycosyltransferase GTFB; rossmann fold; 1.80A {Am 91.39
1s2d_A167 Purine trans deoxyribosylase; ribosylate intermedi 91.26
3ia7_A402 CALG4; glycosysltransferase, calicheamicin, enediy 89.66
2yjn_A441 ERYCIII, glycosyltransferase; transferase, cytochr 89.4
4fzr_A398 SSFS6; structural genomics, PSI-biology, protein s 86.96
2iyf_A430 OLED, oleandomycin glycosyltransferase; antibiotic 84.64
3ek6_A243 Uridylate kinase; UMPK unique GTP B site, alloster 84.34
1vgv_A384 UDP-N-acetylglucosamine 2-epimerase; structural ge 83.05
3dzc_A396 UDP-N-acetylglucosamine 2-epimerase; structural ge 82.55
2an1_A292 Putative kinase; structural genomics, PSI, protein 81.44
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A Back     alignment and structure
Probab=100.00  E-value=4.7e-59  Score=381.47  Aligned_cols=185  Identities=69%  Similarity=1.189  Sum_probs=177.3

Q ss_pred             CCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEEecCccccccccCCCC
Q 045940            2 GKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTV   81 (189)
Q Consensus         2 ~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~   81 (189)
                      ++|++|||||||+.++++.+++.|++||++||++|++||||||+.|+|+|+++||+++||+||||+|+.+.+.|+.++.+
T Consensus         7 ~~m~~V~V~ggsr~~~~~~~~~~A~~lg~~LA~~g~~lV~GGg~~GlM~aa~~gA~~~GG~~iGv~p~~l~~~e~~~~~~   86 (216)
T 1ydh_A            7 SRFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEISGETV   86 (216)
T ss_dssp             CSCSEEEEECCSCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTTCCEEEEEEGGGHHHHCCSSCC
T ss_pred             CCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCCcccHhHHHHHHHHHcCCcEEEEechhcCccccccCCC
Confidence            67889999999999999999999999999999999999999998899999999999999999999999888889999999


Q ss_pred             ceEEecCCHHHHHHHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCcc
Q 045940           82 GDVLIVSDMHERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSS  161 (189)
Q Consensus        82 ~~~~~~~~~~~R~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~  161 (189)
                      ++++++++|++||.+|+++||+||++|||+|||+|+||+|||.|++.|+|||+|+|.+|||+++++|+++|+++|||+++
T Consensus        87 ~~~~~~~~~~~Rk~~~~~~sda~I~lpGG~GTLdElfE~lt~~qlg~~~kPvvll~~~gfw~~l~~~l~~~~~~Gfi~~~  166 (216)
T 1ydh_A           87 GDVRVVADMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPG  166 (216)
T ss_dssp             SEEEEESSHHHHHHHHHHHCSEEEECSCSHHHHHHHHHHHHHHHHTSCCCEEEEECGGGTTHHHHHHHHHHHHTTSSCHH
T ss_pred             CcccccCCHHHHHHHHHHhCCEEEEeCCCccHHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHCCCCChH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcEEEeCCHHHHHHHhhcCCCCC
Q 045940          162 ARNIVISAKNARDLLQGMEVPNLLP  186 (189)
Q Consensus       162 ~~~~i~~~~~~ee~~~~l~~~~~~~  186 (189)
                      +.+.+.+++|++|+++.|++|++.+
T Consensus       167 ~~~~~~~~d~~ee~~~~l~~~~~~~  191 (216)
T 1ydh_A          167 ARNIVVSAPTAKELMEKMEEYTPSH  191 (216)
T ss_dssp             HHTTEEEESSHHHHHHHHHHCC---
T ss_pred             HcCeEEEeCCHHHHHHHHHHhcccc
Confidence            9999999999999999999887654
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M} Back     alignment and structure
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str} Back     alignment and structure
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1 Back     alignment and structure
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A Back     alignment and structure
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1 Back     alignment and structure
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1 Back     alignment and structure
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A Back     alignment and structure
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1 Back     alignment and structure
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica} Back     alignment and structure
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A Back     alignment and structure
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris} Back     alignment and structure
>3uqz_A DNA processing protein DPRA; SAM and rossmann fold, DNA processing protein A, DNA binding; HET: DNA SO4; 2.70A {Streptococcus pneumoniae} Back     alignment and structure
>3imk_A Putative molybdenum carrier protein; YP_461806.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus SB} Back     alignment and structure
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2 Back     alignment and structure
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A* Back     alignment and structure
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A* Back     alignment and structure
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis} Back     alignment and structure
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens} Back     alignment and structure
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A* Back     alignment and structure
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa} Back     alignment and structure
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A* Back     alignment and structure
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Back     alignment and structure
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* Back     alignment and structure
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae} Back     alignment and structure
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5 Back     alignment and structure
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A Back     alignment and structure
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A* Back     alignment and structure
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A* Back     alignment and structure
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5 Back     alignment and structure
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A* Back     alignment and structure
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} Back     alignment and structure
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} Back     alignment and structure
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* Back     alignment and structure
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A Back     alignment and structure
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A* Back     alignment and structure
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae} Back     alignment and structure
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 189
d1ydhb_181 c.129.1.1 (B:) Hypothetical protein At5g11950 {Tha 9e-54
d2q4oa1183 c.129.1.1 (A:8-190) Hypothetical protein At2g37210 8e-51
d1t35a_179 c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus 2e-49
d1weka_208 c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA16 4e-33
d1rcua_170 c.129.1.1 (A:) Hypothetical protein TM1055 {Thermo 9e-33
d1weha_171 c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA02 5e-30
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 181 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At5g11950
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  167 bits (424), Expect = 9e-54
 Identities = 128/178 (71%), Positives = 161/178 (90%)

Query: 3   KFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCH 62
           +F+++CVFCGS+SG+R++FSDAA++L  +LV+RKI+LVYGGGSVGLMGL+S+ +++GG H
Sbjct: 1   RFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGLH 60

Query: 63  VLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAFIALPGGYGTMEELLEMIT 122
           VLG+IPKAL+PIEISG+TVGDV +V+DMHERKA MA+ A+AFIALPGGYGTMEELLEMIT
Sbjct: 61  VLGIIPKALMPIEISGETVGDVRVVADMHERKAAMAQEAEAFIALPGGYGTMEELLEMIT 120

Query: 123 WSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNARDLLQGME 180
           WSQLGIH K VG+LNVDGYY++LL  FD GVEEGFIK  ARNIV+SA  A++L++ ME
Sbjct: 121 WSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELMEKME 178
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]} Length = 179 Back     information, alignment and structure
>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]} Length = 208 Back     information, alignment and structure
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]} Length = 170 Back     information, alignment and structure
>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]} Length = 171 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query189
d1ydhb_181 Hypothetical protein At5g11950 {Thale cress (Arabi 100.0
d2q4oa1183 Hypothetical protein At2g37210/T2N18.3 {Thale cres 100.0
d1t35a_179 Hypothetical protein YvdD {Bacillus subtilis [TaxI 100.0
d1weka_208 Hypothetical protein TT1465 (TTHA1644) {Thermus th 100.0
d1weha_171 Hypothetical protein TT1887 (TTHA0294) {Thermus th 100.0
d1rcua_170 Hypothetical protein TM1055 {Thermotoga maritima [ 100.0
d2nx2a1177 Hypothetical protein YpsA {Bacillus subtilis [TaxI 97.35
d2f62a1152 Nucleoside 2-deoxyribosyltransferase {Trypanosoma 96.34
d1s2da_167 Purine transdeoxyribosylase {Lactobacillus helveti 95.55
d1f8ya_156 Nucleoside 2-deoxyribosyltransferase {Lactobacillu 94.81
d1e3ja2170 Ketose reductase (sorbitol dehydrogenase) {Silverl 92.07
d2bona1295 Lipid kinase YegS {Escherichia coli [TaxId: 562]} 87.17
d1rrva_401 TDP-vancosaminyltransferase GftD {Amycolatopsis or 85.39
d1rjwa2168 Alcohol dehydrogenase {Bacillus stearothermophilus 85.05
d1f0ka_351 Peptidoglycan biosynthesis glycosyltransferase Mur 84.91
d1kyha_ 275 Hypothetical protein YxkO {Bacillus subtilis [TaxI 83.68
d1llua2166 Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax 80.76
d1iira_401 UDP-glucosyltransferase GtfB {Amycolatopsis orient 80.09
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At5g11950
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.8e-60  Score=377.53  Aligned_cols=181  Identities=71%  Similarity=1.225  Sum_probs=176.6

Q ss_pred             CCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEEecCccccccccCCCCc
Q 045940            3 KFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVG   82 (189)
Q Consensus         3 ~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~   82 (189)
                      ||++|||||||+.++++.|++.|++||+.||++||.||||||+.|+|+|+++||+++||+|+||+|..+.+.+..++.++
T Consensus         1 ~~k~v~Vf~gs~~~~~~~~~~~a~~lg~~La~~g~~lv~GGG~~GlMga~a~ga~~~gg~viGv~~~~l~~~e~~~~~~~   80 (181)
T d1ydhb_           1 RFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEISGETVG   80 (181)
T ss_dssp             CCSEEEEECCSCCCSSTHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTTCCEEEEEEGGGHHHHCCSCCCS
T ss_pred             CCcEEEEEccCCCCcCCHHHHHHHHHHHHHHHCCCeEEECCCchHHHHHHHHhHhhcCCcccccchhhhhhhhcCCcccC
Confidence            79999999999999999999999999999999999999999999999999999999999999999998888888899999


Q ss_pred             eEEecCCHHHHHHHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccc
Q 045940           83 DVLIVSDMHERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSA  162 (189)
Q Consensus        83 ~~~~~~~~~~R~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~  162 (189)
                      +++.+++|++||..|++.|||||+||||+|||+|++++|+|.|++.++||++++|.+|||++|++|+++++++||++++.
T Consensus        81 ~~~~~~~~~~Rk~~m~~~sdafIvlPGG~GTLdEl~e~l~l~ql~~~~kpiiiln~~gfw~~l~~~l~~~~~~g~i~~~~  160 (181)
T d1ydhb_          81 DVRVVADMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGA  160 (181)
T ss_dssp             EEEEESSHHHHHHHHHHHCSEEEECSCSHHHHHHHHHHHHHHHHTSCCCEEEEECGGGTTHHHHHHHHHHHHHTSSCHHH
T ss_pred             cceeeccHHHHHHHHHHhCeeEEEeCCccchHHHHHHHHHHHHhcccCCCeEEEecCccHHHHHHHHHHHHHCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcEEEeCCHHHHHHHhhcCC
Q 045940          163 RNIVISAKNARDLLQGMEVPN  183 (189)
Q Consensus       163 ~~~i~~~~~~ee~~~~l~~~~  183 (189)
                      .+.+.+++||||++++|++|.
T Consensus       161 ~~~~~~~d~~ee~~~~l~~~t  181 (181)
T d1ydhb_         161 RNIVVSAPTAKELMEKMEEYT  181 (181)
T ss_dssp             HTTEEEESSHHHHHHHHHHCC
T ss_pred             cCeEEEeCCHHHHHHHHHhhC
Confidence            999999999999999999874
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2nx2a1 c.129.1.2 (A:1-177) Hypothetical protein YpsA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]} Back     information, alignment and structure
>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]} Back     information, alignment and structure
>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Back     information, alignment and structure
>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kyha_ c.72.1.4 (A:) Hypothetical protein YxkO {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure