Citrus Sinensis ID: 045942

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-
Protein Sequence
GSHHDRKNTRPHLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIKSSDY
Secondary Structure (PSIPRED)
ccccccccccccccEEEEcccccccccHHHHHHcccccccEEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEEEccHHHHHHccccccccccccccccEEEEccEEEccccc
Secondary Structure Prediction (SSPRO)
cccHHHccccccccEEEEcccccHccccHHHcccccccccEEEEcccHHHHHccHcccccccccEEEEcccccHccccccccccccccEEEEcccHHHHHHHccccccccccEccccEEEEccccEccccc
Coil and Loop (DISEMBL)
gshhdrkntrphlRRVVIGEITQFLELPQWLLQCCTDTLqsliivdcpnfmalpgslkdLEALETLVIARcpklsslpedmhhvTTLKSLAIaecpalserckpptgedwpkiahipeillddkmikssdy
Flexible Loop (DISEMBL)
gshhdrkntrphlrrvVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALSErckpptgedwpkiahipeillddkmikssdy
Low Complexity Region (SEG)
GSHHDRKNTRPHLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIKSSDY
Disordered region (IsUnstruct)
************LRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLD*********
Disordered Region (DISOPRED)
********TRPHLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIKS***
Disordered Region (DISEMBL)
*********RPHLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIKSSDY
Disordered Region (DISPRO)
*S***RKNTRPHLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMI*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GSHHDRKNTRPHLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIKSSDY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	131	2.2.26 [Sep-21-2011]
Q7XBQ9	970	Disease resistance protei	N/A	no	0.809	0.109	0.394	1e-12
Q7XA40	992	Putative disease resistan	N/A	no	0.633	0.083	0.428	2e-11
Q7XA39	988	Putative disease resistan	N/A	no	0.877	0.116	0.315	3e-11
Q7XA42	979	Putative disease resistan	N/A	no	0.824	0.110	0.369	7e-09
Q9SZA7	816	Probable disease resistan	yes	no	0.709	0.113	0.336	4e-06
Q9LZ25	811	Probable disease resistan	no	no	0.664	0.107	0.348	7e-06
Q9LVT1	623	Putative disease resistan	no	no	0.664	0.139	0.337	8e-06
Q9FJK8	908	Probable disease resistan	no	no	0.435	0.062	0.403	2e-05
Q9FW44	787	Disease resistance protei	no	no	0.450	0.074	0.377	6e-05
P59584	910	Disease resistance protei	no	no	0.435	0.062	0.385	8e-05

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 12  HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIAR 70
           +L+ + I       ELP  L     + L+SL I  C    +LP   L+ L +L  L +  
Sbjct: 860 NLKYLTISRCNNLKELPTSL--ASLNALKSLKIQLCCALESLPEEGLEGLSSLTELFVEH 917

Query: 71  CPKLSSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEI 119
           C  L  LPE + H+TTL SL I  CP L +RC+   GEDW KI+HIP +
Sbjct: 918 CNMLKCLPEGLQHLTTLTSLKIRGCPQLIKRCEKGIGEDWHKISHIPNV 966

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.
Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 37  DTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAIAEC 95
           + L+ L I  C    +LP   L+ L +L  L +  C  L  LPE + H+TTL SL I  C
Sbjct: 905 NNLKCLDIRYCYALESLPEEGLEGLSSLTELFVEHCNMLKCLPEGLQHLTTLTSLKIRGC 964

Query: 96  PALSERCKPPTGEDWPKIAHIPEI 119
           P L +RC+   GEDW KI+HIP +
Sbjct: 965 PQLIKRCEKGIGEDWHKISHIPNV 988

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 62/149 (41%), Gaps = 34/149 (22%)

Query: 4   HDRKNTR--------PHLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG 55
           H   NTR          L  + IG   +   LP+ +    T+ L+ L   D  N   LP 
Sbjct: 838 HGNTNTRGLSSISNLSTLTSLRIGANYRATSLPEEMFTSLTN-LEFLSFFDFKNLKDLPT 896

Query: 56  SLKDLEALETLVIARCPKLSS-------------------------LPEDMHHVTTLKSL 90
           SL  L AL+ L I  C  L S                         LPE + H+T L +L
Sbjct: 897 SLTSLNALKRLQIESCDSLESFPEQGLEGLTSLTQLFVKYCKMLKCLPEGLQHLTALTNL 956

Query: 91  AIAECPALSERCKPPTGEDWPKIAHIPEI 119
            ++ CP + +RC    GEDW KIAHIP +
Sbjct: 957 GVSGCPEVEKRCDKEIGEDWHKIAHIPNL 985

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 12  HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIAR 70
           +L+ + I       ELP  L     + L+SL    C    +LP   +K L +L  L ++ 
Sbjct: 869 NLKYLKISFFRNLKELPTSL--ASLNALKSLKFEFCDALESLPEEGVKGLTSLTELSVSN 926

Query: 71  CPKLSSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILL 121
           C  L  LPE + H+T L +L I +CP + +RC+   GEDW KIAHIP + L
Sbjct: 927 CMMLKCLPEGLQHLTALTTLTITQCPIVFKRCERGIGEDWHKIAHIPYLTL 977

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9SZA7|DRL29_ARATH Probable disease resistance protein At4g33300 OS=Arabidopsis thaliana GN=At4g33300 PE=2 SV=3

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 5   DRKNTRPHLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALE 64
           D  +  P L  + I      + LP  +  C   +L  L I +CP    LP +L  L+ALE
Sbjct: 650 DVADIFPKLGDLTIDHCDDLVALPSSI--CGLTSLSCLSITNCPRLGELPKNLSKLQALE 707

Query: 65  TLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALS 99
            L +  CP+L +LP ++  +  LK L I++C +LS
Sbjct: 708 ILRLYACPELKTLPGEICELPGLKYLDISQCVSLS 742

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ25|DRL30_ARATH Probable disease resistance protein At5g04720 OS=Arabidopsis thaliana GN=At5g04720 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 2/89 (2%)

Query: 11  PHLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIAR 70
           P L  + I      LELP  +  C   +L S+ I +CP    LP +L  L+AL+ L +  
Sbjct: 651 PKLSDLTIDHCDDLLELPSTI--CGITSLNSISITNCPRIKELPKNLSKLKALQLLRLYA 708

Query: 71  CPKLSSLPEDMHHVTTLKSLAIAECPALS 99
           C +L+SLP ++  +  LK + I++C +LS
Sbjct: 709 CHELNSLPVEICELPRLKYVDISQCVSLS 737

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT1|DRL39_ARATH Putative disease resistance protein At5g47280 OS=Arabidopsis thaliana GN=At5g47280 PE=3 SV=1

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 2/89 (2%)

Query: 11  PHLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIAR 70
           P L  + I       ELP  +  C   +L S+ I +CPN   LP ++  L+AL+ L +  
Sbjct: 463 PKLTDITIDYCDDLAELPSTI--CGITSLNSISITNCPNIKELPKNISKLQALQLLRLYA 520

Query: 71  CPKLSSLPEDMHHVTTLKSLAIAECPALS 99
           CP+L SLP ++  +  L  + I+ C +LS
Sbjct: 521 CPELKSLPVEICELPRLVYVDISHCLSLS 549

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJK8|RP8L4_ARATH Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%)

Query: 63  LETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEI 119
           L TL I  C KL  LP+ + ++T+LK L I E     +    P GED+ K+ HIP++
Sbjct: 845 LRTLTIHDCEKLKELPDGLKYITSLKELKIREMKREWKEKLVPGGEDYYKVQHIPDV 901

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FW44|ADR1_ARATH Disease resistance protein ADR1 OS=Arabidopsis thaliana GN=ADR1 PE=2 SV=2

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 40/61 (65%)

Query: 38  TLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPA 97
           +L SL I +CP  + LP +L ++++LE L +  CP+L SLP ++  +  LK + I++C +
Sbjct: 652 SLNSLSITNCPRILELPKNLSNVQSLERLRLYACPELISLPVEVCELPCLKYVDISQCVS 711

Query: 98  L 98
           L
Sbjct: 712 L 712

Disease resistance (R) protein that mediates resistance against Hyaloperonospora parasitica in a salicylic acid-dependent manner. Also mediates resistance against Erysiphe cichoracearum is both salicylic acid-dependent and partially NPR1-dependent. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Arabidopsis thaliana (taxid: 3702)

>sp|P59584|RP8HA_ARATH Disease resistance protein RPH8A OS=Arabidopsis thaliana GN=RPH8A PE=3 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 32/57 (56%)

Query: 63  LETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEI 119
           L TL I  C KL  LP+ + ++T+LK L I       +    P GED+ K+ HIP++
Sbjct: 847 LRTLTIHDCEKLKELPDGLKYITSLKELKIEGMKREWKEKLVPGGEDYYKVQHIPDV 903

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to RPP8, it does not specifically recognize the Emco5 avirulence protein from Hyaloperonospora parasitica.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
225441815	874	PREDICTED: putative disease resistance p	0.969	0.145	0.460	1e-23
147777286	815	hypothetical protein VITISV_009157 [Viti	0.854	0.137	0.513	3e-23
356506536	831	PREDICTED: disease resistance protein RG	0.900	0.141	0.420	5e-21
255577491	860	leucine-rich repeat containing protein,	0.916	0.139	0.426	9e-21
356570458	857	PREDICTED: disease resistance protein RG	0.900	0.137	0.420	2e-20
356571981	754	PREDICTED: disease resistance protein RG	0.900	0.156	0.428	7e-20
356570433	856	PREDICTED: disease resistance protein RG	0.900	0.137	0.436	2e-19
224069146	1053	cc-nbs-lrr resistance protein [Populus t	0.633	0.078	0.488	1e-18
224069120	968	nbs-lrr resistance protein [Populus tric	0.633	0.085	0.488	1e-18
351720930	863	disease resistance protein [Glycine max]	0.916	0.139	0.396	1e-18

>gi|225441815|ref|XP_002277987.1| PREDICTED: putative disease resistance protein RGA3-like [Vitis vinifera]

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 83/128 (64%), Gaps = 1/128 (0%)

Query: 3   HHDRKNTRPHLRRVVIGEITQFLELPQWLLQ-CCTDTLQSLIIVDCPNFMALPGSLKDLE 61
            +D +     LR +++ ++ +   LP WL+Q     TL  L+I  C  F ALP SL++L 
Sbjct: 744 ENDIQGISCRLRSLMVVDLPKLEALPGWLIQGLAASTLHYLLIRRCHKFKALPESLENLT 803

Query: 62  ALETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILL 121
           +L+ L I  CP+LS+L   MH +TTLK L+I +CP LS+RCKP  GEDW KIAH+PEI +
Sbjct: 804 SLQELRIDDCPQLSTLSGGMHRLTTLKVLSIRDCPELSKRCKPEIGEDWHKIAHVPEIYI 863

Query: 122 DDKMIKSS 129
           D + IKS+
Sbjct: 864 DGEAIKST 871

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777286|emb|CAN69089.1| hypothetical protein VITISV_009157 [Vitis vinifera]

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/113 (51%), Positives = 74/113 (65%), Gaps = 1/113 (0%)

Query: 16  VVIGEITQFLELPQWLLQCCT-DTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKL 74
            +IG + Q   LPQWL Q  T   L  L I  C NF  LP SL++L +L+ L I  CP+L
Sbjct: 698 FIIGALPQLEALPQWLXQGPTXSNLHCLGINGCHNFKGLPESLENLTSLQELRIGDCPQL 757

Query: 75  SSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK 127
           S+L E MH +TTLK L+I +CP LS+RC P  GEDW +IAH+PEI +D + IK
Sbjct: 758 STLXEGMHRLTTLKVLSIDDCPELSKRCMPKIGEDWHRIAHVPEINIDGESIK 810

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506536|ref|XP_003522036.1| PREDICTED: disease resistance protein RGA2-like [Glycine max]

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 79/119 (66%), Gaps = 1/119 (0%)

Query: 3   HHDRKNTRPHLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEA 62
           HH+ +N +  L+ V +  + Q + LPQWL Q   ++LQSL +++C N   LP  L  +  
Sbjct: 702 HHEEQNPKLKLKLVGLWRLPQPVALPQWL-QETANSLQSLFMMNCDNLGMLPEWLSTMTN 760

Query: 63  LETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILL 121
           L+ L+I+ CPKL SLP+++HH+T L+ L I++CP L ++C+P  GE WPKI+HI  + +
Sbjct: 761 LKVLIISDCPKLISLPDNIHHLTALEYLQISDCPELCKKCQPHVGEFWPKISHIKHVFI 819

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577491|ref|XP_002529624.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223530909|gb|EEF32769.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 52/122 (42%), Positives = 78/122 (63%)

Query: 1   GSHHDRKNTRPHLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDL 60
           G+  D ++    L+ + + E+   + LP+WLLQ    +L+S+ I  C N + LP  L+D 
Sbjct: 735 GNVVDNEHCGFKLKTLSLHELPLLVALPRWLLQWSACSLESIAIWRCHNLVMLPEWLQDF 794

Query: 61  EALETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEIL 120
            +L+ L I  CP LSSLP  +H +T+L+ L + +CPAL+E C P TG+DWP+IAH+ EI 
Sbjct: 795 ISLQKLDILGCPGLSSLPIGLHRLTSLRKLTVEDCPALAESCNPETGKDWPQIAHVSEIY 854

Query: 121 LD 122
           LD
Sbjct: 855 LD 856

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570458|ref|XP_003553404.1| PREDICTED: disease resistance protein RGA2-like [Glycine max]

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 76/119 (63%), Gaps = 1/119 (0%)

Query: 3   HHDRKNTRPHLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEA 62
           HH+ +N +  L+ V    + Q + LPQWL Q   ++L++LII DC N   LP  L  +  
Sbjct: 728 HHEEQNPKLRLKYVAFWGLPQLVALPQWL-QETANSLRTLIISDCDNLEMLPEWLSTMTN 786

Query: 63  LETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILL 121
           L+ L+I  CPKL SLP+++HH+T L+ L I+ CP L ++C+P  GE W KI+HI ++ +
Sbjct: 787 LKVLLIYGCPKLISLPDNIHHLTALEHLHISGCPELCKKCQPHVGEFWSKISHIKDVFI 845

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571981|ref|XP_003554149.1| PREDICTED: disease resistance protein RGA2-like [Glycine max]

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 77/119 (64%), Gaps = 1/119 (0%)

Query: 3   HHDRKNTRPHLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEA 62
           HH+ ++    L+ V +G + Q + LPQWL Q   ++LQSL I++C N   LP  L  +  
Sbjct: 625 HHEEQSPMLKLKCVGLGGLPQLVALPQWL-QETANSLQSLGIINCDNLEMLPEWLSTMTN 683

Query: 63  LETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILL 121
           L++LVI+ CP+L SLP+++HH+T L+ L IA CP L  + +P  GE W KI+HI E+ +
Sbjct: 684 LKSLVISDCPELISLPDNIHHLTALERLRIAYCPELCRKYQPHVGEFWSKISHIKEVFI 742

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570433|ref|XP_003553392.1| PREDICTED: disease resistance protein RGA2-like [Glycine max]

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 73/119 (61%), Gaps = 1/119 (0%)

Query: 3   HHDRKNTRPHLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEA 62
           HH+ +N +  L+ V    + Q + LPQWL Q   ++LQSL I +C N   LP  L  L  
Sbjct: 727 HHEEQNPKLRLKFVAFVGLPQLVALPQWL-QETANSLQSLAIKNCDNLEMLPEWLSTLTN 785

Query: 63  LETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILL 121
           L+ L I  CP+L SLP+++HH+T L+ L IA CP L  + +P  GE W KI+HI E+L+
Sbjct: 786 LKVLHILACPELISLPDNIHHLTALERLRIAYCPELRRKYQPHVGEFWSKISHIKEVLI 844

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069146|ref|XP_002302911.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222844637|gb|EEE82184.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/88 (48%), Positives = 62/88 (70%)

Query: 34   CCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAIA 93
            C   +L+ L+IVDC  F +L   ++ L  LE L +  CP+L+SLPE + H+T+L+SL I 
Sbjct: 965  CGLSSLRKLVIVDCDKFTSLSEGVRHLRVLEDLDLVNCPELNSLPESIQHLTSLQSLTIW 1024

Query: 94   ECPALSERCKPPTGEDWPKIAHIPEILL 121
            +CP L +RC+   GEDWPKIAHIP+I++
Sbjct: 1025 DCPNLEKRCEKDLGEDWPKIAHIPKIII 1052

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069120|ref|XP_002302905.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222844631|gb|EEE82178.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/88 (48%), Positives = 62/88 (70%)

Query: 34  CCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAIA 93
           C   +L+ L+IVDC  F +L   ++ L  LE L +  CP+L+SLPE + H+T+L+SL I 
Sbjct: 880 CGLSSLRKLVIVDCDKFTSLSEGVRHLRVLEDLDLVNCPELNSLPESIQHLTSLQSLTIW 939

Query: 94  ECPALSERCKPPTGEDWPKIAHIPEILL 121
           +CP L +RC+   GEDWPKIAHIP+I++
Sbjct: 940 DCPNLEKRCEKDLGEDWPKIAHIPKIII 967

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720930|ref|NP_001235657.1| disease resistance protein [Glycine max] gi|223452597|gb|ACM89625.1| disease resistance protein [Glycine max]

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 74/121 (61%), Gaps = 1/121 (0%)

Query: 3   HHDRKNTRPHLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEA 62
           HH+ +N +  L+ +   ++ Q + LPQWL Q   ++LQSL I  C N   LP  L  +  
Sbjct: 743 HHEERNGKLKLKLLGFRDLPQLVALPQWL-QETANSLQSLRISGCDNLEILPEWLSTMTN 801

Query: 63  LETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLD 122
           L+ L+I+ CPKL SLP+++ H+  L+ L I  CP L  +C+P  GE W KI+HI E+ ++
Sbjct: 802 LKVLLISDCPKLISLPDNIDHLAALEWLRIVGCPELCRKCQPHVGEFWSKISHIKEVFIE 861

Query: 123 D 123
           +
Sbjct: 862 E 862

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
TAIR|locus:2175433	811	ADR1-L2 "ADR1-like 2" [Arabido	0.664	0.107	0.348	1.8e-07
TAIR|locus:2171479	623	ADR1-L3 "ADR1-like 3" [Arabido	0.664	0.139	0.337	2.1e-07
TAIR|locus:2119196	816	ADR1-L1 "ADR1-like 1" [Arabido	0.687	0.110	0.351	3e-07
TAIR|locus:2006932	787	ADR1 "ACTIVATED DISEASE RESIST	0.648	0.108	0.340	5.6e-06
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.694	0.076	0.311	9.1e-06
TAIR|locus:2174944	815	AT5G66910 [Arabidopsis thalian	0.541	0.087	0.356	1.2e-05
TAIR|locus:2152536	908	AT5G48620 [Arabidopsis thalian	0.458	0.066	0.383	2.3e-05
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.458	0.042	0.383	3.8e-05
TAIR|locus:2094498	1981	AT3G25510 [Arabidopsis thalian	0.618	0.040	0.321	7e-05
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.458	0.066	0.366	0.00013

TAIR|locus:2175433 ADR1-L2 "ADR1-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 31/89 (34%), Positives = 49/89 (55%)

Query:    11 PHLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIAR 70
             P L  + I      LELP  +  C   +L S+ I +CP    LP +L  L+AL+ L +  
Sbjct:   651 PKLSDLTIDHCDDLLELPSTI--CGITSLNSISITNCPRIKELPKNLSKLKALQLLRLYA 708

Query:    71 CPKLSSLPEDMHHVTTLKSLAIAECPALS 99
             C +L+SLP ++  +  LK + I++C +LS
Sbjct:   709 CHELNSLPVEICELPRLKYVDISQCVSLS 737

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2171479 ADR1-L3 "ADR1-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 30/89 (33%), Positives = 47/89 (52%)

Query:    11 PHLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIAR 70
             P L  + I       ELP  +  C   +L S+ I +CPN   LP ++  L+AL+ L +  
Sbjct:   463 PKLTDITIDYCDDLAELPSTI--CGITSLNSISITNCPNIKELPKNISKLQALQLLRLYA 520

Query:    71 CPKLSSLPEDMHHVTTLKSLAIAECPALS 99
             CP+L SLP ++  +  L  + I+ C +LS
Sbjct:   521 CPELKSLPVEICELPRLVYVDISHCLSLS 549

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2119196 ADR1-L1 "ADR1-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 33/94 (35%), Positives = 49/94 (52%)

Query:    11 PHLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIAR 70
             P L  + I      + LP  +  C   +L  L I +CP    LP +L  L+ALE L +  
Sbjct:   656 PKLGDLTIDHCDDLVALPSSI--CGLTSLSCLSITNCPRLGELPKNLSKLQALEILRLYA 713

Query:    71 CPKLSSLPEDMHHVTTLKSLAIAECPALSERCKP 104
             CP+L +LP ++  +  LK L I++C +LS  C P
Sbjct:   714 CPELKTLPGEICELPGLKYLDISQCVSLS--CLP 745

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0048046 "apoplast" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

TAIR|locus:2006932 ADR1 "ACTIVATED DISEASE RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 5.6e-06, P = 5.6e-06
 Identities = 30/88 (34%), Positives = 49/88 (55%)

Query:    11 PHLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIAR 70
             P L  + I      LEL    +   T +L SL I +CP  + LP +L ++++LE L +  
Sbjct:   628 PSLSDLTIDHCDDLLELKS--IFGIT-SLNSLSITNCPRILELPKNLSNVQSLERLRLYA 684

Query:    71 CPKLSSLPEDMHHVTTLKSLAIAECPAL 98
             CP+L SLP ++  +  LK + I++C +L
Sbjct:   685 CPELISLPVEVCELPCLKYVDISQCVSL 712

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0016301 "kinase activity" evidence=TAS

GO:0051707 "response to other organism" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0080167 "response to karrikin" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IGI

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 9.1e-06, P = 9.1e-06
 Identities = 29/93 (31%), Positives = 51/93 (54%)

Query:     8 NTRPHLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLV 67
             +T  +L+ + +      +ELP  +    T+ L+ L ++DC + + LP S+ +L  L+ L 
Sbjct:   677 STATNLQELRLINCLSLVELPSSIGNA-TNLLE-LDLIDCSSLVKLPSSIGNLTNLKKLF 734

Query:    68 IARCPKLSSLPEDMHHVTTLKSLAIAECPALSE 100
             + RC  L  LP    +VT+LK L ++ C +L E
Sbjct:   735 LNRCSSLVKLPSSFGNVTSLKELNLSGCSSLLE 767

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2174944 AT5G66910 [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 26/73 (35%), Positives = 40/73 (54%)

Query:    26 ELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVT 85
             ELP W+ +  +  L++L I +C     LP ++ +L  LE L +  C  LS LPE    ++
Sbjct:   670 ELPYWIPEVVS--LKTLSITNCNKLSQLPEAIGNLSRLEVLRMCSCMNLSELPEATERLS 727

Query:    86 TLKSLAIAECPAL 98
              L+SL I+ C  L
Sbjct:   728 NLRSLDISHCLGL 740

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 2.3e-05, P = 2.3e-05
 Identities = 23/60 (38%), Positives = 34/60 (56%)

Query:    60 LEALETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEI 119
             +  L TL I  C KL  LP+ + ++T+LK L I E     +    P GED+ K+ HIP++
Sbjct:   842 MPCLRTLTIHDCEKLKELPDGLKYITSLKELKIREMKREWKEKLVPGGEDYYKVQHIPDV 901

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 3.8e-05, P = 3.8e-05
 Identities = 23/60 (38%), Positives = 35/60 (58%)

Query:    39 LQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPAL 98
             L+SL I DCPN    P        L +++++ C KL +LPE +  +T+L SL I +CP +
Sbjct:  1217 LESLEIRDCPNLETFPQGGLPTPKLSSMLLSNCKKLQALPEKLFGLTSLLSLFIIKCPEI 1276

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 7.0e-05, P = 7.0e-05
 Identities = 27/84 (32%), Positives = 48/84 (57%)

Query:    12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARC 71
             +L R+ +   +  +ELP  +       LQ L + +C N + LP S+ +L  L TL +ARC
Sbjct:   926 NLWRLDLSGCSSLVELPSSIGNITN--LQELNLCNCSNLVKLPSSIGNLHLLFTLSLARC 983

Query:    72 PKLSSLPEDMHHVTTLKSLAIAEC 95
              KL +LP +++ + +L+ L + +C
Sbjct:   984 QKLEALPSNIN-LKSLERLDLTDC 1006

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
 Identities = 22/60 (36%), Positives = 33/60 (55%)

Query:    60 LEALETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEI 119
             +  L TL I  C KL  LP+ + ++T+LK L I       +    P GED+ K+ HIP++
Sbjct:   842 MPCLRTLTIDDCKKLKELPDGLKYITSLKELKIEGMKREWKEKLVPGGEDYYKVQHIPDV 901

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	131
PLN03210	1153	PLN03210, PLN03210, Resistant to P	6e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.002

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 37.9 bits (88), Expect = 6e-04
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 31  LLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSL 90
           L+   + +L  L + D P+ + LP S+++L  LE L I  C  L +LP  + ++ +L+SL
Sbjct: 772 LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESL 830

Query: 91  AIAECPALSERCKP 104
            ++ C  L  R  P
Sbjct: 831 DLSGCSRL--RTFP 842

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 36.4 bits (84), Expect = 0.002
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 4/52 (7%)

Query: 39  LQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSL 90
           L++L + DC + + LP S++ L  LE L ++RC  L  LP  ++    LKSL
Sbjct: 659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGIN----LKSL 706

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	131
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.01
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.99
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.93
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.9
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.68
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.55
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.52
PLN03150	623	hypothetical protein; Provisional	98.44
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.44
PLN03150	623	hypothetical protein; Provisional	98.38
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.29
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.26
PRK15386	426	type III secretion protein GogB; Provisional	98.12
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.06
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.05
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.04
KOG0472	565	consensus Leucine-rich repeat protein [Function un	97.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.97
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.8
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.71
PRK15386	426	type III secretion protein GogB; Provisional	97.67
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.55
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.45
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.4
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.37
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.17
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.15
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.05
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.02
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.02
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	96.97
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	96.87
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.87
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.81
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.75
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.6
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.57
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.42
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.2
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.09
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.99
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.9
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	95.65
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.64
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.57
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	95.41
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	94.92
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	94.65
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.31
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	93.91
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	93.83
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	92.97
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	91.99
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	91.83
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	91.23
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.95
smart00370	26	LRR Leucine-rich repeats, outliers.	90.95
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	90.69
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	90.19
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	90.15
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	89.01
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	86.97
KOG2123	388	consensus Uncharacterized conserved protein [Funct	86.54
KOG4341	483	consensus F-box protein containing LRR [General fu	84.32
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	83.3
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	81.48
KOG4341	483	consensus F-box protein containing LRR [General fu	80.98

>PLN03210 Resistant to P

Probab=99.01  E-value=1.3e-09  Score=91.99  Aligned_cols=90  Identities=28%  Similarity=0.543  Sum_probs=69.4

Q ss_pred             CCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCC
Q 045942            6 RKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHV   84 (131)
Q Consensus         6 ~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l   84 (131)
                      ..+..+ +|+.|+++++..++.+|. +  ..+++|+.|++.+|..+..+|..++++++|+.|++.+|..++.+|..+ ++
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-l--s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIPD-L--SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCCc-c--ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            445566 788888877777777764 4  567888888888888888888888888888888888888888888765 67


Q ss_pred             CCcCeEeecCCchhh
Q 045942           85 TTLKSLAIAECPALS   99 (131)
Q Consensus        85 ~~L~~L~i~~~~~l~   99 (131)
                      ++|+.|.+.+|..+.
T Consensus       704 ~sL~~L~Lsgc~~L~  718 (1153)
T PLN03210        704 KSLYRLNLSGCSRLK  718 (1153)
T ss_pred             CCCCEEeCCCCCCcc
Confidence            788888888886553

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.99  E-value=7.6e-10  Score=91.69  Aligned_cols=90  Identities=14%  Similarity=0.173  Sum_probs=52.2

Q ss_pred             CCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCC
Q 045942            5 DRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHH   83 (131)
Q Consensus         5 ~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~   83 (131)
                      |..++++ +|++|+++++.....+|..+  +.+++|++|++++|.....+|..++.+++|++|++.+|.....+|..+..
T Consensus       157 p~~~~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  234 (968)
T PLN00113        157 PNDIGSFSSLKVLDLGGNVLVGKIPNSL--TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG  234 (968)
T ss_pred             ChHHhcCCCCCEEECccCcccccCChhh--hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence            4445555 66666666554444555555  55666666666666444455555666666666666665544455666666


Q ss_pred             CCCcCeEeecCCc
Q 045942           84 VTTLKSLAIAECP   96 (131)
Q Consensus        84 l~~L~~L~i~~~~   96 (131)
                      +++|++|++.+|.
T Consensus       235 l~~L~~L~L~~n~  247 (968)
T PLN00113        235 LTSLNHLDLVYNN  247 (968)
T ss_pred             CCCCCEEECcCce
Confidence            6666666665553

>PLN03210 Resistant to P

Probab=98.93  E-value=1.8e-09  Score=91.23  Aligned_cols=93  Identities=18%  Similarity=0.360  Sum_probs=60.0

Q ss_pred             CCCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccC--------------------CCCCCCccc
Q 045942            4 HDRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMAL--------------------PGSLKDLEA   62 (131)
Q Consensus         4 ~~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~l--------------------p~~l~~l~s   62 (131)
                      .|.+++++ +|+.|++++|..++.+|...   .+++|+.|++++|..+..+                    |..++.+++
T Consensus       794 lP~si~~L~~L~~L~Ls~C~~L~~LP~~~---~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~  870 (1153)
T PLN03210        794 LPSSIQNLHKLEHLEIENCINLETLPTGI---NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSN  870 (1153)
T ss_pred             cChhhhCCCCCCEEECCCCCCcCeeCCCC---CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCC
Confidence            35556666 67777777777777776554   4566666666666554433                    333445666


Q ss_pred             ccccccccccccCcCCCCCCCCCCcCeEeecCCchhh
Q 045942           63 LETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALS   99 (131)
Q Consensus        63 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~~~~l~   99 (131)
                      |+.|++.+|+++..+|..+..+++|+.+++.+|..+.
T Consensus       871 L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~  907 (1153)
T PLN03210        871 LSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT  907 (1153)
T ss_pred             CCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence            7777777777777777666667777777777776654

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.90  E-value=2.7e-09  Score=88.47  Aligned_cols=91  Identities=13%  Similarity=0.105  Sum_probs=68.2

Q ss_pred             CCCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCC
Q 045942            4 HDRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMH   82 (131)
Q Consensus         4 ~~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~   82 (131)
                      .|..++++ +|++|++++|.....+|..+  +.+++|+.|++++|.....+|..++.+++|++|++.+|...+.+|..+.
T Consensus       180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  257 (968)
T PLN00113        180 IPNSLTNLTSLEFLTLASNQLVGQIPREL--GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG  257 (968)
T ss_pred             CChhhhhCcCCCeeeccCCCCcCcCChHH--cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh
Confidence            45667777 88888888876666677777  7888888888888755556777777888888888877765566777777


Q ss_pred             CCCCcCeEeecCCc
Q 045942           83 HVTTLKSLAIAECP   96 (131)
Q Consensus        83 ~l~~L~~L~i~~~~   96 (131)
                      ++++|++|++.+|.
T Consensus       258 ~l~~L~~L~L~~n~  271 (968)
T PLN00113        258 NLKNLQYLFLYQNK  271 (968)
T ss_pred             CCCCCCEEECcCCe
Confidence            77777777777654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.69  E-value=2.9e-09  Score=82.80  Aligned_cols=113  Identities=22%  Similarity=0.329  Sum_probs=69.9

Q ss_pred             CCCCCCCCccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCC
Q 045942            4 HDRKNTRPHLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHH   83 (131)
Q Consensus         4 ~~~~i~~l~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~   83 (131)
                      .|..++.+-|+.|.+++ ++++.+|+++  +.++.|..|+.+.| .+..+|..++.+.+|+.|.++.+ .+..+|+++..
T Consensus       136 lp~~lC~lpLkvli~sN-Nkl~~lp~~i--g~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn-~l~~lp~El~~  210 (722)
T KOG0532|consen  136 LPDGLCDLPLKVLIVSN-NKLTSLPEEI--GLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEELCS  210 (722)
T ss_pred             CChhhhcCcceeEEEec-CccccCCccc--ccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhh-hhhhCCHHHhC
Confidence            34445555555555554 3455666555  55556666666655 55566655666666666666553 45566666665


Q ss_pred             CCCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccCC
Q 045942           84 VTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIKS  128 (131)
Q Consensus        84 l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~  128 (131)
                      | .|..|++++ .++.     ...-++.+++|++.+.++.|..||
T Consensus       211 L-pLi~lDfSc-Nkis-----~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  211 L-PLIRLDFSC-NKIS-----YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             C-ceeeeeccc-Ccee-----ecchhhhhhhhheeeeeccCCCCC
Confidence            5 666777653 3332     234467889999999999999887

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.68  E-value=1.6e-09  Score=73.49  Aligned_cols=90  Identities=22%  Similarity=0.272  Sum_probs=51.4

Q ss_pred             CCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccc------------
Q 045942            5 DRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARC------------   71 (131)
Q Consensus         5 ~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c------------   71 (131)
                      |+.|..+ +|+.|.+++. .++.+|..+  ..++.|+.|.+.-+ .+..+|.++|.++.|+.|++..+            
T Consensus        49 ppnia~l~nlevln~~nn-qie~lp~~i--ssl~klr~lnvgmn-rl~~lprgfgs~p~levldltynnl~e~~lpgnff  124 (264)
T KOG0617|consen   49 PPNIAELKNLEVLNLSNN-QIEELPTSI--SSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFF  124 (264)
T ss_pred             CCcHHHhhhhhhhhcccc-hhhhcChhh--hhchhhhheecchh-hhhcCccccCCCchhhhhhccccccccccCCcchh
Confidence            4445555 6666666543 455666555  55555555555432 45555555555555555555442            


Q ss_pred             ------------cccCcCCCCCCCCCCcCeEeecCCchh
Q 045942           72 ------------PKLSSLPEDMHHVTTLKSLAIAECPAL   98 (131)
Q Consensus        72 ------------~~l~~lp~~~~~l~~L~~L~i~~~~~l   98 (131)
                                  ...+.+|..++.+++|+.|.++++..+
T Consensus       125 ~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll  163 (264)
T KOG0617|consen  125 YMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL  163 (264)
T ss_pred             HHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh
Confidence                        234556777777777777777766543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.55  E-value=8.8e-08  Score=53.90  Aligned_cols=56  Identities=18%  Similarity=0.306  Sum_probs=27.5

Q ss_pred             cceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccc
Q 045942           13 LRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARC   71 (131)
Q Consensus        13 L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c   71 (131)
                      |++|++++| ++..+|.+.| ..+++|+.|+++++ .+..++. .+..+++|++|++++|
T Consensus         3 L~~L~l~~n-~l~~i~~~~f-~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    3 LESLDLSNN-KLTEIPPDSF-SNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             ESEEEETSS-TESEECTTTT-TTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred             CcEEECCCC-CCCccCHHHH-cCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence            455555554 4555553332 44555555555544 4444442 3445555555555443

...

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.52  E-value=7.6e-09  Score=70.22  Aligned_cols=110  Identities=18%  Similarity=0.257  Sum_probs=83.8

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLA   91 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~   91 (131)
                      +.+.|.++.. ++..+|+.+  ..+.+|+.|.++++ .++.+|..+..++.|+.|.+. ...+..+|.+++.++.|+.|+
T Consensus        34 ~ITrLtLSHN-Kl~~vppni--a~l~nlevln~~nn-qie~lp~~issl~klr~lnvg-mnrl~~lprgfgs~p~levld  108 (264)
T KOG0617|consen   34 NITRLTLSHN-KLTVVPPNI--AELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVG-MNRLNILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhcccC-ceeecCCcH--HHhhhhhhhhcccc-hhhhcChhhhhchhhhheecc-hhhhhcCccccCCCchhhhhh
Confidence            6777888874 788899988  88999999999988 899999999999999999986 467889999999999999998


Q ss_pred             ecCCch--------------hhhhcCC-----CCCCCCCcccCCCeeEecCccc
Q 045942           92 IAECPA--------------LSERCKP-----PTGEDWPKIAHIPEILLDDKMI  126 (131)
Q Consensus        92 i~~~~~--------------l~~~~~~-----~~~~~~~~i~~l~~l~~~~~~~  126 (131)
                      +..+..              +...+..     ....+..+++.++.+..+++..
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndl  162 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDL  162 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCch
Confidence            764321              1111111     1233455677777777777664

>PLN03150 hypothetical protein; Provisional

Probab=98.44  E-value=2.8e-07  Score=73.77  Aligned_cols=81  Identities=20%  Similarity=0.194  Sum_probs=41.4

Q ss_pred             cceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEee
Q 045942           13 LRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAI   92 (131)
Q Consensus        13 L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~i   92 (131)
                      ++.|++.++..-..+|..+  ..+++|+.|+++++.....+|..++.+++|+.|++++|.....+|..+.++++|+.|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i--~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDI--SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEECCCCCccccCCHHH--hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            4445555443333445444  55555555555555333345555555555555555554444445555555555555555


Q ss_pred             cCC
Q 045942           93 AEC   95 (131)
Q Consensus        93 ~~~   95 (131)
                      .++
T Consensus       498 s~N  500 (623)
T PLN03150        498 NGN  500 (623)
T ss_pred             cCC
Confidence            544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.44  E-value=3.7e-07  Score=51.31  Aligned_cols=58  Identities=26%  Similarity=0.450  Sum_probs=49.5

Q ss_pred             CCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCC-CCCCCCCcCeEeecCCc
Q 045942           37 DTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPE-DMHHVTTLKSLAIAECP   96 (131)
Q Consensus        37 ~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~-~~~~l~~L~~L~i~~~~   96 (131)
                      |+|+.|++++| ++..+|. .+..+++|++|+++++ .+..+++ .+..+++|++|++.+|.
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence            57899999999 8999984 6788999999999875 5777765 57899999999999874

...

>PLN03150 hypothetical protein; Provisional

Probab=98.38  E-value=5.8e-07  Score=71.95  Aligned_cols=93  Identities=16%  Similarity=0.152  Sum_probs=76.7

Q ss_pred             CCCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCC
Q 045942            4 HDRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMH   82 (131)
Q Consensus         4 ~~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~   82 (131)
                      .|..++.+ +|+.|+++++.....+|..+  +.+++|+.|+++++.....+|+.++.+++|+.|++++|.....+|..+.
T Consensus       434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~--~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~  511 (623)
T PLN03150        434 IPNDISKLRHLQSINLSGNSIRGNIPPSL--GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG  511 (623)
T ss_pred             CCHHHhCCCCCCEEECCCCcccCcCChHH--hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHh
Confidence            45567788 99999999986556889888  8999999999999966668999999999999999999887778898776


Q ss_pred             CC-CCcCeEeecCCchh
Q 045942           83 HV-TTLKSLAIAECPAL   98 (131)
Q Consensus        83 ~l-~~L~~L~i~~~~~l   98 (131)
                      .+ .++..+.+.+++.+
T Consensus       512 ~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        512 GRLLHRASFNFTDNAGL  528 (623)
T ss_pred             hccccCceEEecCCccc
Confidence            53 35677888776643

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.29  E-value=1.2e-07  Score=71.51  Aligned_cols=88  Identities=19%  Similarity=0.245  Sum_probs=63.0

Q ss_pred             CCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCC----------------------CCcccCCC-CCCCc
Q 045942            5 DRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDC----------------------PNFMALPG-SLKDL   60 (131)
Q Consensus         5 ~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~----------------------~~l~~lp~-~l~~l   60 (131)
                      |..++.+ +|..|++++. .+-.+|..+  +.+-.|+.|+++.+                      ..++++++ ++++|
T Consensus       428 ~~~l~~l~kLt~L~L~NN-~Ln~LP~e~--~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm  504 (565)
T KOG0472|consen  428 PLELSQLQKLTFLDLSNN-LLNDLPEEM--GSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNM  504 (565)
T ss_pred             hHHHHhhhcceeeecccc-hhhhcchhh--hhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence            3344555 6677777663 466777666  66667777777764                      13344443 36788


Q ss_pred             ccccccccccccccCcCCCCCCCCCCcCeEeecCCc
Q 045942           61 EALETLVIARCPKLSSLPEDMHHVTTLKSLAIAECP   96 (131)
Q Consensus        61 ~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~~~   96 (131)
                      .+|.+|++.+ ..+..+|+.++++++|++|.++++|
T Consensus       505 ~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  505 RNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             hhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence            8999999976 5688999999999999999999887

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.26  E-value=3.1e-07  Score=75.89  Aligned_cols=79  Identities=23%  Similarity=0.300  Sum_probs=39.5

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLA   91 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~   91 (131)
                      .|++|++++|..+..+|..+  +.+-+|++|+++++ .+..+|.+++++..|.+|++..+..+..+|.....+++|++|.
T Consensus       572 ~LrVLDLs~~~~l~~LP~~I--~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~  648 (889)
T KOG4658|consen  572 LLRVLDLSGNSSLSKLPSSI--GELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR  648 (889)
T ss_pred             ceEEEECCCCCccCcCChHH--hhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence            45555555555555555555  44555555555544 4445555555555555555554444444443333345555555


Q ss_pred             ec
Q 045942           92 IA   93 (131)
Q Consensus        92 i~   93 (131)
                      +.
T Consensus       649 l~  650 (889)
T KOG4658|consen  649 LP  650 (889)
T ss_pred             ee
Confidence            43

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.12  E-value=3.3e-06  Score=64.29  Aligned_cols=12  Identities=33%  Similarity=0.819  Sum_probs=7.2

Q ss_pred             CcCeEeecCCch
Q 045942           86 TLKSLAIAECPA   97 (131)
Q Consensus        86 ~L~~L~i~~~~~   97 (131)
                      +|++|.+.+|..
T Consensus       157 SLk~L~Is~c~~  168 (426)
T PRK15386        157 SLKTLSLTGCSN  168 (426)
T ss_pred             cccEEEecCCCc
Confidence            566666666553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.06  E-value=1.8e-06  Score=58.69  Aligned_cols=79  Identities=23%  Similarity=0.328  Sum_probs=19.3

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCC-CCcccccccccccccccCcCCC--CCCCCCCcC
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSL-KDLEALETLVIARCPKLSSLPE--DMHHVTTLK   88 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l-~~l~sL~~L~l~~c~~l~~lp~--~~~~l~~L~   88 (131)
                      +|+.|+++++ .+..++ ++  ..++.|++|+++++ .+.++.+.+ ..+++|++|.+.++ ++..+-.  .+..+++|+
T Consensus        43 ~L~~L~Ls~N-~I~~l~-~l--~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~  116 (175)
T PF14580_consen   43 KLEVLDLSNN-QITKLE-GL--PGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLR  116 (175)
T ss_dssp             T--EEE-TTS---S--T-T------TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--
T ss_pred             CCCEEECCCC-CCcccc-Cc--cChhhhhhcccCCC-CCCccccchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcc
Confidence            4444444443 233332 23  34444555544444 344443222 13445555555432 2332221  223344555


Q ss_pred             eEeecCCc
Q 045942           89 SLAIAECP   96 (131)
Q Consensus        89 ~L~i~~~~   96 (131)
                      .|++.++|
T Consensus       117 ~L~L~~NP  124 (175)
T PF14580_consen  117 VLSLEGNP  124 (175)
T ss_dssp             EEE-TT-G
T ss_pred             eeeccCCc
Confidence            55555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.05  E-value=3.4e-06  Score=69.86  Aligned_cols=85  Identities=21%  Similarity=0.314  Sum_probs=71.1

Q ss_pred             ccceEeecCcCC-CcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeE
Q 045942           12 HLRRVVIGEITQ-FLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSL   90 (131)
Q Consensus        12 ~L~~L~i~~c~~-l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L   90 (131)
                      .|++|-+.+... +..++.++| ..++.|..|++++|..+..+|..++.+-+|++|++.+. .+..+|.+++++..|.+|
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff-~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFF-RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYL  623 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHH-hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhhee
Confidence            577777766432 566665544 78999999999999999999999999999999999874 688999999999999999


Q ss_pred             eecCCchh
Q 045942           91 AIAECPAL   98 (131)
Q Consensus        91 ~i~~~~~l   98 (131)
                      ++..+..+
T Consensus       624 nl~~~~~l  631 (889)
T KOG4658|consen  624 NLEVTGRL  631 (889)
T ss_pred             cccccccc
Confidence            98866544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.04  E-value=4.4e-07  Score=72.16  Aligned_cols=93  Identities=20%  Similarity=0.264  Sum_probs=72.8

Q ss_pred             CCCCCCCC-ccceEeecCcC-CCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCC
Q 045942            4 HDRKNTRP-HLRRVVIGEIT-QFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDM   81 (131)
Q Consensus         4 ~~~~i~~l-~L~~L~i~~c~-~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~   81 (131)
                      .|+.++.+ .|+.|+..++. ..+.+|+++  +.+..|+.+...++ +++-+|+++..+..|+.|.++ |+.+-.+|+.+
T Consensus       283 LP~avcKL~kL~kLy~n~NkL~FeGiPSGI--GKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~-~NrLiTLPeaI  358 (1255)
T KOG0444|consen  283 LPDAVCKLTKLTKLYANNNKLTFEGIPSGI--GKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLD-HNRLITLPEAI  358 (1255)
T ss_pred             chHHHhhhHHHHHHHhccCcccccCCccch--hhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccc-ccceeechhhh
Confidence            35556666 67777665432 245678888  78888888888776 788889999899999999884 56788899999


Q ss_pred             CCCCCcCeEeecCCchhhh
Q 045942           82 HHVTTLKSLAIAECPALSE  100 (131)
Q Consensus        82 ~~l~~L~~L~i~~~~~l~~  100 (131)
                      .-++.|+.|++..+|++..
T Consensus       359 HlL~~l~vLDlreNpnLVM  377 (1255)
T KOG0444|consen  359 HLLPDLKVLDLRENPNLVM  377 (1255)
T ss_pred             hhcCCcceeeccCCcCccC
Confidence            9999999999999998753

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=97.97  E-value=2.3e-06  Score=64.75  Aligned_cols=84  Identities=29%  Similarity=0.349  Sum_probs=65.5

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT   86 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~   86 (131)
                      |+.. .|++|++.. +.++.+|.+.. ..++++..|++.++ +++++|.++.-+++|+.|++++ ..+.++|..++++ .
T Consensus       224 f~gcs~L~Elh~g~-N~i~~lpae~~-~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-h  298 (565)
T KOG0472|consen  224 FPGCSLLKELHVGE-NQIEMLPAEHL-KHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL-H  298 (565)
T ss_pred             CCccHHHHHHHhcc-cHHHhhHHHHh-cccccceeeecccc-ccccCchHHHHhhhhhhhcccC-CccccCCcccccc-e
Confidence            4444 445555433 24555564442 47899999999988 8999999999999999999987 4689999999999 9


Q ss_pred             cCeEeecCCc
Q 045942           87 LKSLAIAECP   96 (131)
Q Consensus        87 L~~L~i~~~~   96 (131)
                      |+.|.+.|+|
T Consensus       299 L~~L~leGNP  308 (565)
T KOG0472|consen  299 LKFLALEGNP  308 (565)
T ss_pred             eeehhhcCCc
Confidence            9999999888

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.97  E-value=1.9e-06  Score=70.51  Aligned_cols=82  Identities=22%  Similarity=0.311  Sum_probs=65.4

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT   86 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~   86 (131)
                      +-++ +|++|+++++ .+.++|...+ .++..|+.|+++++ +++.+|+.+..++.|++|...+ ..+..+| ++..++.
T Consensus       379 l~~~~hLKVLhLsyN-rL~~fpas~~-~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l~q  453 (1081)
T KOG0618|consen  379 LVNFKHLKVLHLSYN-RLNSFPASKL-RKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQLPQ  453 (1081)
T ss_pred             hccccceeeeeeccc-ccccCCHHHH-hchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhcCc
Confidence            3445 8999999875 6888996544 78899999999998 7999998888888899887755 4577788 6777788


Q ss_pred             cCeEeecC
Q 045942           87 LKSLAIAE   94 (131)
Q Consensus        87 L~~L~i~~   94 (131)
                      |+.++++.
T Consensus       454 L~~lDlS~  461 (1081)
T KOG0618|consen  454 LKVLDLSC  461 (1081)
T ss_pred             ceEEeccc
Confidence            88888863

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.96  E-value=5e-06  Score=56.56  Aligned_cols=109  Identities=20%  Similarity=0.290  Sum_probs=35.7

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhcc-CCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCC-CCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQC-CTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDM-HHV   84 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~-~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~-~~l   84 (131)
                      +.+. .+++|+++++ .++.+. .+  + .+.+|+.|++++| .+..+. ++..++.|++|+++++ .+.++...+ ..+
T Consensus        15 ~~n~~~~~~L~L~~n-~I~~Ie-~L--~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~l   87 (175)
T PF14580_consen   15 YNNPVKLRELNLRGN-QISTIE-NL--GATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNL   87 (175)
T ss_dssp             -----------------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHHHHH-
T ss_pred             ccccccccccccccc-cccccc-ch--hhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCC-CCCccccchHHhC
Confidence            4445 7899999885 566663 44  4 5789999999998 788884 6888999999999874 677886554 357


Q ss_pred             CCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           85 TTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        85 ~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                      ++|++|++.++.- .+ ..  .-.....++++..+.+.+|++.
T Consensus        88 p~L~~L~L~~N~I-~~-l~--~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   88 PNLQELYLSNNKI-SD-LN--ELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             TT--EEE-TTS----S-CC--CCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCEEECcCCcC-CC-hH--HhHHHHcCCCcceeeccCCccc
Confidence            8999999976542 10 00  0111234555666777777764

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.80  E-value=5.2e-06  Score=66.25  Aligned_cols=89  Identities=21%  Similarity=0.275  Sum_probs=62.7

Q ss_pred             CCCCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcCCCC
Q 045942            3 HHDRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSLPED   80 (131)
Q Consensus         3 ~~~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~lp~~   80 (131)
                      -.|..|-++ -|.+|+++.+ ++.+.|.++  ....++-.|.++++ ++..+|.. +-+++-|-.|++++ +.++.+|+.
T Consensus        94 GiP~diF~l~dLt~lDLShN-qL~EvP~~L--E~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ  168 (1255)
T KOG0444|consen   94 GIPTDIFRLKDLTILDLSHN-QLREVPTNL--EYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQ  168 (1255)
T ss_pred             CCCchhcccccceeeecchh-hhhhcchhh--hhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhcccc-chhhhcCHH
Confidence            356667777 7778888764 577777776  66677777777766 67777743 34567777777766 467777777


Q ss_pred             CCCCCCcCeEeecCCc
Q 045942           81 MHHVTTLKSLAIAECP   96 (131)
Q Consensus        81 ~~~l~~L~~L~i~~~~   96 (131)
                      +..+..|++|.++++|
T Consensus       169 ~RRL~~LqtL~Ls~NP  184 (1255)
T KOG0444|consen  169 IRRLSMLQTLKLSNNP  184 (1255)
T ss_pred             HHHHhhhhhhhcCCCh
Confidence            7777777777777776

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.71  E-value=7.3e-05  Score=39.32  Aligned_cols=38  Identities=18%  Similarity=0.274  Sum_probs=24.1

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccC
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMAL   53 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~l   53 (131)
                      +|++|+++++ .++.+|..+  +.+++|+.|+++++ .+..+
T Consensus         2 ~L~~L~l~~N-~i~~l~~~l--~~l~~L~~L~l~~N-~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNN-QITDLPPEL--SNLPNLETLNLSNN-PISDI   39 (44)
T ss_dssp             T-SEEEETSS-S-SSHGGHG--TTCTTSSEEEETSS-CCSBE
T ss_pred             cceEEEccCC-CCcccCchH--hCCCCCCEEEecCC-CCCCC
Confidence            4677777765 566777656  67777777777777 44444

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.67  E-value=5.9e-05  Score=57.63  Aligned_cols=62  Identities=37%  Similarity=0.722  Sum_probs=47.7

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCC
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDM   81 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~   81 (131)
                      ++++|++++| .++++|. +    .++|+.|.+++|..+..+|..+.  ++|+.|.+.+|..+..+|..+
T Consensus        53 ~l~~L~Is~c-~L~sLP~-L----P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sL  114 (426)
T PRK15386         53 ASGRLYIKDC-DIESLPV-L----PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESV  114 (426)
T ss_pred             CCCEEEeCCC-CCcccCC-C----CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccccc
Confidence            7888899888 6888872 2    25688899998888888886553  688888888887787777654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.55  E-value=5.3e-05  Score=39.86  Aligned_cols=39  Identities=31%  Similarity=0.514  Sum_probs=27.4

Q ss_pred             CCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcC
Q 045942           37 DTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSL   77 (131)
Q Consensus        37 ~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~l   77 (131)
                      ++|++|+++++ .+..+|..+++|+.|+.|++++|+ +..+
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~-i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP-ISDI   39 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred             CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCC-CCCC
Confidence            46788888887 677787667888888888888763 4444

...

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.45  E-value=1.3e-05  Score=58.34  Aligned_cols=11  Identities=18%  Similarity=0.290  Sum_probs=5.2

Q ss_pred             CCcCeEeecCC
Q 045942           85 TTLKSLAIAEC   95 (131)
Q Consensus        85 ~~L~~L~i~~~   95 (131)
                      ++|++|++++|
T Consensus       193 ~~L~~L~L~~n  203 (319)
T cd00116         193 CNLEVLDLNNN  203 (319)
T ss_pred             CCCCEEeccCC
Confidence            34455554444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.40  E-value=1.7e-05  Score=62.75  Aligned_cols=79  Identities=18%  Similarity=0.236  Sum_probs=36.8

Q ss_pred             ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCC-CCCCCCcC
Q 045942           12 HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPED-MHHVTTLK   88 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~   88 (131)
                      +|+.|+++.+ .+..+. +.+  ...++|+.|+++++ .+.++++ .+..+..|++|.++.+ .+..+.++ +..+.+|+
T Consensus       294 ~L~~L~lS~N-aI~rih~d~W--sftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~  368 (873)
T KOG4194|consen  294 SLEQLDLSYN-AIQRIHIDSW--SFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLH  368 (873)
T ss_pred             hhhhhccchh-hhheeecchh--hhcccceeEecccc-ccccCChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhh
Confidence            5555555542 343332 223  34456666666655 5555553 2444455555555442 23333332 33344555


Q ss_pred             eEeecCC
Q 045942           89 SLAIAEC   95 (131)
Q Consensus        89 ~L~i~~~   95 (131)
                      +|+++.+
T Consensus       369 ~LdLr~N  375 (873)
T KOG4194|consen  369 KLDLRSN  375 (873)
T ss_pred             hhcCcCC
Confidence            5554443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.37  E-value=1.8e-05  Score=62.26  Aligned_cols=88  Identities=24%  Similarity=0.336  Sum_probs=62.3

Q ss_pred             CCCCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCC
Q 045942            3 HHDRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDM   81 (131)
Q Consensus         3 ~~~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~   81 (131)
                      ..|..++.. .|..|+.+.| ++.++|..+  +.+.+|+.|.+..+ .+..+|+++..| .|..|+++ |+++..+|-++
T Consensus       157 ~lp~~ig~~~tl~~ld~s~n-ei~slpsql--~~l~slr~l~vrRn-~l~~lp~El~~L-pLi~lDfS-cNkis~iPv~f  230 (722)
T KOG0532|consen  157 SLPEEIGLLPTLAHLDVSKN-EIQSLPSQL--GYLTSLRDLNVRRN-HLEDLPEELCSL-PLIRLDFS-CNKISYLPVDF  230 (722)
T ss_pred             cCCcccccchhHHHhhhhhh-hhhhchHHh--hhHHHHHHHHHhhh-hhhhCCHHHhCC-ceeeeecc-cCceeecchhh
Confidence            346667755 7888888765 567788777  77788888777776 666777766643 34567764 56777777777


Q ss_pred             CCCCCcCeEeecCCc
Q 045942           82 HHVTTLKSLAIAECP   96 (131)
Q Consensus        82 ~~l~~L~~L~i~~~~   96 (131)
                      .+++.|++|.+.++|
T Consensus       231 r~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  231 RKMRHLQVLQLENNP  245 (722)
T ss_pred             hhhhhheeeeeccCC
Confidence            777777777777766

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.17  E-value=0.0014  Score=53.83  Aligned_cols=71  Identities=17%  Similarity=0.438  Sum_probs=35.7

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLA   91 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~   91 (131)
                      +|+.|+++++ ++..+|..+  .  ++|+.|++++| .+..+|..+.  .+|+.|++++| .+..+|..+.  ++|+.|+
T Consensus       200 ~L~~L~Ls~N-~LtsLP~~l--~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~  268 (754)
T PRK15370        200 QITTLILDNN-ELKSLPENL--Q--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN-RITELPERLP--SALQSLD  268 (754)
T ss_pred             CCcEEEecCC-CCCcCChhh--c--cCCCEEECCCC-ccccCChhhh--ccccEEECcCC-ccCcCChhHh--CCCCEEE
Confidence            5666666654 466666544  2  45666666665 4555554332  34455555443 2334444332  2444444


Q ss_pred             ec
Q 045942           92 IA   93 (131)
Q Consensus        92 i~   93 (131)
                      +.
T Consensus       269 Ls  270 (754)
T PRK15370        269 LF  270 (754)
T ss_pred             Cc
Confidence            44

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.15  E-value=0.00078  Score=55.32  Aligned_cols=73  Identities=26%  Similarity=0.409  Sum_probs=44.7

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLA   91 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~   91 (131)
                      +|++|++++| .++.+|..+  .  ++|+.|++++| .+..+|..+.  .+|+.|++++ .++..+|..+.  ++|+.|+
T Consensus       221 nL~~L~Ls~N-~LtsLP~~l--~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~  289 (754)
T PRK15370        221 NIKTLYANSN-QLTSIPATL--P--DTIQEMELSIN-RITELPERLP--SALQSLDLFH-NKISCLPENLP--EELRYLS  289 (754)
T ss_pred             CCCEEECCCC-ccccCChhh--h--ccccEEECcCC-ccCcCChhHh--CCCCEEECcC-CccCccccccC--CCCcEEE
Confidence            6788888765 467777654  2  35777777776 4556665443  4566666654 35556665443  3566666


Q ss_pred             ecCC
Q 045942           92 IAEC   95 (131)
Q Consensus        92 i~~~   95 (131)
                      +.+|
T Consensus       290 Ls~N  293 (754)
T PRK15370        290 VYDN  293 (754)
T ss_pred             CCCC
Confidence            6554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.05  E-value=3.9e-05  Score=58.03  Aligned_cols=79  Identities=20%  Similarity=0.336  Sum_probs=56.0

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCCC-CCCCCCcCe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPED-MHHVTTLKS   89 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~   89 (131)
                      .-..+.+.. +.+..||++.| +.+++|+.|+++++ .+..+ |..+..+.+|..|-+.+..+++.+|.. +..+.+|+.
T Consensus        68 ~tveirLdq-N~I~~iP~~aF-~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   68 ETVEIRLDQ-NQISSIPPGAF-KTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR  144 (498)
T ss_pred             cceEEEecc-CCcccCChhhc-cchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence            445566654 46888887766 78888888988887 56665 455677788877777776788888865 566666666


Q ss_pred             Eeec
Q 045942           90 LAIA   93 (131)
Q Consensus        90 L~i~   93 (131)
                      |.+.
T Consensus       145 LllN  148 (498)
T KOG4237|consen  145 LLLN  148 (498)
T ss_pred             HhcC
Confidence            6544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.02  E-value=0.00019  Score=58.41  Aligned_cols=60  Identities=23%  Similarity=0.268  Sum_probs=41.4

Q ss_pred             cCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCC--CCCCCCCCcCeEeecCCc
Q 045942           34 CCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLP--EDMHHVTTLKSLAIAECP   96 (131)
Q Consensus        34 ~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp--~~~~~l~~L~~L~i~~~~   96 (131)
                      .+||+|..|+|+++ ++..+ .+++++++|+.|.+.+.+... -.  ..+.+|++|+.|+|+.-.
T Consensus       170 ~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnLe~e~-~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  170 ASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNLEFES-YQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             hccCccceeecCCC-CccCc-HHHhccccHHHHhccCCCCCc-hhhHHHHhcccCCCeeeccccc
Confidence            47788888888887 66666 577888888888876654322 11  245677888888887544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.02  E-value=0.0009  Score=55.09  Aligned_cols=54  Identities=24%  Similarity=0.441  Sum_probs=32.6

Q ss_pred             CcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEeecCCc
Q 045942           38 TLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAIAECP   96 (131)
Q Consensus        38 ~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~~~   96 (131)
                      +|+.|+++++ .+..+|..   ..+|+.|+++++ .+..+|..+..+++|+.|++.+++
T Consensus       403 ~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        403 ELKELMVSGN-RLTSLPML---PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             CCCEEEccCC-cCCCCCcc---hhhhhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence            3444444444 34444431   234566666653 466777777778888888888776

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=96.97  E-value=0.00021  Score=56.81  Aligned_cols=37  Identities=14%  Similarity=0.034  Sum_probs=18.8

Q ss_pred             CCCC-ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDC   47 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~   47 (131)
                      +.++ +|+.|++..+ .++... ..+  +.+++|+.|.+..+
T Consensus       217 Fk~L~~L~~LdLnrN-~irive~ltF--qgL~Sl~nlklqrN  255 (873)
T KOG4194|consen  217 FKRLPKLESLDLNRN-RIRIVEGLTF--QGLPSLQNLKLQRN  255 (873)
T ss_pred             hhhcchhhhhhcccc-ceeeehhhhh--cCchhhhhhhhhhc
Confidence            4455 6777776542 333221 122  45666666655544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=96.87  E-value=0.00033  Score=50.95  Aligned_cols=37  Identities=22%  Similarity=0.236  Sum_probs=17.6

Q ss_pred             ccccccccccccccc----CcCCCCCCCCCCcCeEeecCCc
Q 045942           60 LEALETLVIARCPKL----SSLPEDMHHVTTLKSLAIAECP   96 (131)
Q Consensus        60 l~sL~~L~l~~c~~l----~~lp~~~~~l~~L~~L~i~~~~   96 (131)
                      +++|+.|++++|..-    ..++..+..+++|++|++.+|+
T Consensus       192 ~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         192 NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence            345666666555311    1122233344566666666553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.87  E-value=0.00019  Score=59.29  Aligned_cols=80  Identities=19%  Similarity=0.298  Sum_probs=63.4

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLA   91 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~   91 (131)
                      +|+.|++++. ....+|..+  ..++.|+.|.++.+ .++++|....++.+|+++.+. |..+..+|.++..+.+|+.|+
T Consensus        46 ~L~~l~lsnn-~~~~fp~~i--t~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~-~n~l~~lP~~~~~lknl~~Ld  120 (1081)
T KOG0618|consen   46 KLKSLDLSNN-QISSFPIQI--TLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLK-NNRLQSLPASISELKNLQYLD  120 (1081)
T ss_pred             eeEEeecccc-ccccCCchh--hhHHHHhhcccchh-hHhhCchhhhhhhcchhheec-cchhhcCchhHHhhhcccccc
Confidence            6888888875 566788777  67788888888865 788888778888888888884 578888888888888888888


Q ss_pred             ecCCc
Q 045942           92 IAECP   96 (131)
Q Consensus        92 i~~~~   96 (131)
                      ++.+.
T Consensus       121 lS~N~  125 (1081)
T KOG0618|consen  121 LSFNH  125 (1081)
T ss_pred             cchhc
Confidence            77543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.81  E-value=9.2e-05  Score=48.75  Aligned_cols=77  Identities=19%  Similarity=0.308  Sum_probs=49.7

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLA   91 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~   91 (131)
                      .|+..+++++ .++.+|+.+. ..++.++.|.+.++ .+..+|+++..+++|+.|++++++ +...|.-+..+.+|..|+
T Consensus        54 el~~i~ls~N-~fk~fp~kft-~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   54 ELTKISLSDN-GFKKFPKKFT-IKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLD  129 (177)
T ss_pred             eEEEEecccc-hhhhCCHHHh-hccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhc
Confidence            4555566663 5667776553 45667778888776 677788778888888888887754 444555544444554444


Q ss_pred             e
Q 045942           92 I   92 (131)
Q Consensus        92 i   92 (131)
                      .
T Consensus       130 s  130 (177)
T KOG4579|consen  130 S  130 (177)
T ss_pred             C
Confidence            3

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.75  E-value=0.00047  Score=52.09  Aligned_cols=77  Identities=23%  Similarity=0.375  Sum_probs=32.0

Q ss_pred             cceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEee
Q 045942           13 LRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAI   92 (131)
Q Consensus        13 L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~i   92 (131)
                      |+.|++++. .+..+|..+  +.++.|+.|+++++ .+..+|...+..+.|+.|.++++ .+..+|..+.....|+++.+
T Consensus       142 L~~L~l~~N-~i~~l~~~~--~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~  216 (394)
T COG4886         142 LKELDLSDN-KIESLPSPL--RNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDL  216 (394)
T ss_pred             ccccccccc-chhhhhhhh--hccccccccccCCc-hhhhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhh
Confidence            444444432 344443333  44444555544444 34444433334444444444442 34444443222223444444


Q ss_pred             cC
Q 045942           93 AE   94 (131)
Q Consensus        93 ~~   94 (131)
                      .+
T Consensus       217 ~~  218 (394)
T COG4886         217 SN  218 (394)
T ss_pred             cC
Confidence            33

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.60  E-value=0.0071  Score=49.98  Aligned_cols=19  Identities=5%  Similarity=0.120  Sum_probs=12.0

Q ss_pred             CCcccCCCeeEecCcccCC
Q 045942          110 WPKIAHIPEILLDDKMIKS  128 (131)
Q Consensus       110 ~~~i~~l~~l~~~~~~~~~  128 (131)
                      +..+.++..+.+.+|.+..
T Consensus       441 l~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        441 LIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             HhhccCCCeEECCCCCCCc
Confidence            4455666677777776653

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.57  E-value=0.0016  Score=49.60  Aligned_cols=86  Identities=15%  Similarity=0.229  Sum_probs=62.9

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCCCCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPEDMHHVT   85 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~   85 (131)
                      +..+ +|+.|+++++ +++.+-++.| ..+..++.|.+..+ +++.+.. .+..+..|++|++.++..-.-.|..+..+.
T Consensus       270 f~~L~~L~~lnlsnN-~i~~i~~~aF-e~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~  346 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNN-KITRIEDGAF-EGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF  346 (498)
T ss_pred             HhhcccceEeccCCC-ccchhhhhhh-cchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence            4456 8889999874 6777765544 77888999998887 6766653 356788999999988643333466678888


Q ss_pred             CcCeEeecCCc
Q 045942           86 TLKSLAIAECP   96 (131)
Q Consensus        86 ~L~~L~i~~~~   96 (131)
                      +|.+|.+..+|
T Consensus       347 ~l~~l~l~~Np  357 (498)
T KOG4237|consen  347 SLSTLNLLSNP  357 (498)
T ss_pred             eeeeeehccCc
Confidence            99999887554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.42  E-value=0.0016  Score=49.16  Aligned_cols=80  Identities=21%  Similarity=0.397  Sum_probs=59.7

Q ss_pred             ccceEeecCcCCCcccchhhhccCCC-CcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeE
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTD-TLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSL   90 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~-~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L   90 (131)
                      .++.|.+.+ ..+..+|...  ..+. +|+.|++++. .+..+|..++.++.|+.|++.+| .+..+|.....++.|+.|
T Consensus       117 ~l~~L~l~~-n~i~~i~~~~--~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L  191 (394)
T COG4886         117 NLTSLDLDN-NNITDIPPLI--GLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNL  191 (394)
T ss_pred             ceeEEecCC-cccccCcccc--ccchhhccccccccc-chhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhhe
Confidence            567777755 3577777766  5553 8888988877 77888767888899999998885 577777766566788888


Q ss_pred             eecCCc
Q 045942           91 AIAECP   96 (131)
Q Consensus        91 ~i~~~~   96 (131)
                      ++.++.
T Consensus       192 ~ls~N~  197 (394)
T COG4886         192 DLSGNK  197 (394)
T ss_pred             eccCCc
Confidence            877654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.20  E-value=0.00088  Score=46.55  Aligned_cols=85  Identities=16%  Similarity=0.288  Sum_probs=54.8

Q ss_pred             ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccCC-CCCC-CcccccccccccccccCcCC-CCCCCCCCc
Q 045942           12 HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMALP-GSLK-DLEALETLVIARCPKLSSLP-EDMHHVTTL   87 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~lp-~~l~-~l~sL~~L~l~~c~~l~~lp-~~~~~l~~L   87 (131)
                      .++.++-+++. +...- +.+  ..+++++.|.+.+|..+...- +.++ -.++|+.|+|+.|+.+++-. .++..+++|
T Consensus       102 ~IeaVDAsds~-I~~eGle~L--~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL  178 (221)
T KOG3864|consen  102 KIEAVDASDSS-IMYEGLEHL--RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL  178 (221)
T ss_pred             eEEEEecCCch-HHHHHHHHH--hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence            55666655542 21111 333  567888888998887654332 1222 35899999999999887643 235677888


Q ss_pred             CeEeecCCchhh
Q 045942           88 KSLAIAECPALS   99 (131)
Q Consensus        88 ~~L~i~~~~~l~   99 (131)
                      +.|.+.+.+.+.
T Consensus       179 r~L~l~~l~~v~  190 (221)
T KOG3864|consen  179 RRLHLYDLPYVA  190 (221)
T ss_pred             HHHHhcCchhhh
Confidence            888888877543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.09  E-value=0.00035  Score=51.02  Aligned_cols=78  Identities=17%  Similarity=0.224  Sum_probs=57.9

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCC--CCCCCCCcCe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPE--DMHHVTTLKS   89 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~--~~~~l~~L~~   89 (131)
                      +.+.|+.++| .+..+.-.   ..++.|+.|.++-+ ++.++ ..+..++.|++|+++.+ .+.++-+  .+.++++|+.
T Consensus        20 ~vkKLNcwg~-~L~DIsic---~kMp~lEVLsLSvN-kIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   20 NVKKLNCWGC-GLDDISIC---EKMPLLEVLSLSVN-KISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HhhhhcccCC-CccHHHHH---HhcccceeEEeecc-ccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhh
Confidence            5677888887 46666544   47899999999876 67766 34778899999999864 3555532  5688899999


Q ss_pred             EeecCCc
Q 045942           90 LAIAECP   96 (131)
Q Consensus        90 L~i~~~~   96 (131)
                      |++..+|
T Consensus        93 LWL~ENP   99 (388)
T KOG2123|consen   93 LWLDENP   99 (388)
T ss_pred             HhhccCC
Confidence            9998777

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.99  E-value=0.0013  Score=53.68  Aligned_cols=82  Identities=18%  Similarity=0.216  Sum_probs=56.3

Q ss_pred             ccceEeecCcCCC-cccchhhhccCCCCcCEEeecCCCCcc-cCCCCCCCcccccccccccccccCcCCCCCCCCCCcCe
Q 045942           12 HLRRVVIGEITQF-LELPQWLLQCCTDTLQSLIIVDCPNFM-ALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKS   89 (131)
Q Consensus        12 ~L~~L~i~~c~~l-~~lp~~~~~~~l~~L~~L~l~~~~~l~-~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~   89 (131)
                      +|++|+|++-..+ ..+|..+. ..||+|++|.+.+-.... .+-.--.++++|..|+|+++ ++..+ .++.++.+|+.
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig-~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIG-TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV  199 (699)
T ss_pred             hhhhcCccccchhhccHHHHHh-hhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence            7899999874432 23343331 468999999998752111 11122457899999999996 46666 67888999999


Q ss_pred             EeecCCc
Q 045942           90 LAIAECP   96 (131)
Q Consensus        90 L~i~~~~   96 (131)
                      |.+.+..
T Consensus       200 L~mrnLe  206 (699)
T KOG3665|consen  200 LSMRNLE  206 (699)
T ss_pred             HhccCCC
Confidence            9887654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.90  E-value=0.005  Score=27.23  Aligned_cols=9  Identities=11%  Similarity=0.043  Sum_probs=3.8

Q ss_pred             cceEeecCc
Q 045942           13 LRRVVIGEI   21 (131)
Q Consensus        13 L~~L~i~~c   21 (131)
                      |++|++++|
T Consensus         2 L~~Ldls~n   10 (22)
T PF00560_consen    2 LEYLDLSGN   10 (22)
T ss_dssp             ESEEEETSS
T ss_pred             ccEEECCCC
Confidence            344444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=95.65  E-value=0.0015  Score=48.33  Aligned_cols=39  Identities=21%  Similarity=0.400  Sum_probs=21.0

Q ss_pred             CCCcccccccccccccccCcCC--CCCCCCCCcCeEeecCCc
Q 045942           57 LKDLEALETLVIARCPKLSSLP--EDMHHVTTLKSLAIAECP   96 (131)
Q Consensus        57 l~~l~sL~~L~l~~c~~l~~lp--~~~~~l~~L~~L~i~~~~   96 (131)
                      ++.+-+|..|++.++ +++.+-  .++++++-|+.+.+.++|
T Consensus       370 L~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  370 LRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence            344555666666553 233332  345666666666666665

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.64  E-value=0.009  Score=24.74  Aligned_cols=15  Identities=20%  Similarity=0.346  Sum_probs=6.1

Q ss_pred             CcCEEeecCCCCcccC
Q 045942           38 TLQSLIIVDCPNFMAL   53 (131)
Q Consensus        38 ~L~~L~l~~~~~l~~l   53 (131)
                      +|+.|++++|. +..+
T Consensus         2 ~L~~L~l~~n~-L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNR-LTSL   16 (17)
T ss_dssp             T-SEEEETSS---SSE
T ss_pred             ccCEEECCCCC-CCCC
Confidence            45555555552 4443

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.57  E-value=0.019  Score=40.20  Aligned_cols=85  Identities=15%  Similarity=0.235  Sum_probs=46.0

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCC--CCCCCcccccccccccccccCcCCC----C
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALP--GSLKDLEALETLVIARCPKLSSLPE----D   80 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp--~~l~~l~sL~~L~l~~c~~l~~lp~----~   80 (131)
                      +..+ .|.+|.+.+ +.+..+-+.+. ..+++|+.|.+.++ ++..+.  +.+..++.|++|.+.++| ......    -
T Consensus        60 lp~l~rL~tLll~n-NrIt~I~p~L~-~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yv  135 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNN-NRITRIDPDLD-TFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYV  135 (233)
T ss_pred             CCCccccceEEecC-Ccceeeccchh-hhccccceEEecCc-chhhhhhcchhccCCccceeeecCCc-hhcccCceeEE
Confidence            3444 666666654 34555554441 34566777777665 444443  235556667777666654 222221    1


Q ss_pred             CCCCCCcCeEeecCCc
Q 045942           81 MHHVTTLKSLAIAECP   96 (131)
Q Consensus        81 ~~~l~~L~~L~i~~~~   96 (131)
                      +..+++|+.|++.+..
T Consensus       136 l~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  136 LYKLPSLRTLDFQKVT  151 (233)
T ss_pred             EEecCcceEeehhhhh
Confidence            3346677777776554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=95.41  E-value=0.0016  Score=43.03  Aligned_cols=80  Identities=20%  Similarity=0.317  Sum_probs=60.4

Q ss_pred             cceEeecCcCCCcccchh---hhccCCCCcCEEeecCCCCcccCCCCCCC-cccccccccccccccCcCCCCCCCCCCcC
Q 045942           13 LRRVVIGEITQFLELPQW---LLQCCTDTLQSLIIVDCPNFMALPGSLKD-LEALETLVIARCPKLSSLPEDMHHVTTLK   88 (131)
Q Consensus        13 L~~L~i~~c~~l~~lp~~---~~~~~l~~L~~L~l~~~~~l~~lp~~l~~-l~sL~~L~l~~c~~l~~lp~~~~~l~~L~   88 (131)
                      +..+++++|+ +..++..   +  .....|+..+++++ .++.+|+.+.. ++.++++++.+ +.+..+|.++..++.|+
T Consensus        29 ~h~ldLssc~-lm~i~davy~l--~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr  103 (177)
T KOG4579|consen   29 LHFLDLSSCQ-LMYIADAVYML--SKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALR  103 (177)
T ss_pred             hhhcccccch-hhHHHHHHHHH--hCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhh
Confidence            4456777775 3344432   3  34567888899988 78889876543 56899999987 57899999999999999


Q ss_pred             eEeecCCch
Q 045942           89 SLAIAECPA   97 (131)
Q Consensus        89 ~L~i~~~~~   97 (131)
                      .|+++.++-
T Consensus       104 ~lNl~~N~l  112 (177)
T KOG4579|consen  104 SLNLRFNPL  112 (177)
T ss_pred             hcccccCcc
Confidence            999998874

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=94.92  E-value=0.006  Score=45.31  Aligned_cols=82  Identities=17%  Similarity=0.312  Sum_probs=50.9

Q ss_pred             CCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEeecCCchhhhhcCCCCCCCC-Cccc
Q 045942           36 TDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDW-PKIA  114 (131)
Q Consensus        36 l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~~~~l~~~~~~~~~~~~-~~i~  114 (131)
                      ...|++++++++ .+..+.+.+.-+|.++.|+++.+ .+..+.. ++.+++|+.|+++++..-.  +     ..| .++.
T Consensus       283 Wq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N~Ls~--~-----~Gwh~KLG  352 (490)
T KOG1259|consen  283 WQELTELDLSGN-LITQIDESVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGNLLAE--C-----VGWHLKLG  352 (490)
T ss_pred             Hhhhhhcccccc-chhhhhhhhhhccceeEEecccc-ceeeehh-hhhcccceEeecccchhHh--h-----hhhHhhhc
Confidence            346777888877 67777777777788888888774 3444433 6777888888887765222  0     113 3455


Q ss_pred             CCCeeEecCcccC
Q 045942          115 HIPEILLDDKMIK  127 (131)
Q Consensus       115 ~l~~l~~~~~~~~  127 (131)
                      +|+.+.+.+|.+.
T Consensus       353 NIKtL~La~N~iE  365 (490)
T KOG1259|consen  353 NIKTLKLAQNKIE  365 (490)
T ss_pred             CEeeeehhhhhHh
Confidence            5555555555443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=94.65  E-value=0.021  Score=44.14  Aligned_cols=35  Identities=23%  Similarity=0.363  Sum_probs=18.0

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCC
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDC   47 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~   47 (131)
                      +|+.|.++.|.....=-.+++ ..+|+|+.|++..+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~-~~fPsl~~L~L~~N  232 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWIL-LTFPSLEVLYLEAN  232 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHH-HhCCcHHHhhhhcc
Confidence            788888888853211001111 34455555555554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.31  E-value=0.0039  Score=43.41  Aligned_cols=40  Identities=28%  Similarity=0.664  Sum_probs=22.1

Q ss_pred             CCCcccccccccccccccCc-----CCCCCCCCCCcCeEeecCCchhh
Q 045942           57 LKDLEALETLVIARCPKLSS-----LPEDMHHVTTLKSLAIAECPALS   99 (131)
Q Consensus        57 l~~l~sL~~L~l~~c~~l~~-----lp~~~~~l~~L~~L~i~~~~~l~   99 (131)
                      +.++++++.|.+.+|..+..     +..   -.++|+.|++++|+.+.
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~---~~~~L~~L~lsgC~rIT  165 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLERLGG---LAPSLQDLDLSGCPRIT  165 (221)
T ss_pred             HhccchhhhheeccccchhhHHHHHhcc---cccchheeeccCCCeec
Confidence            44556666666666654332     211   23466677777776655

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=93.91  E-value=0.046  Score=41.88  Aligned_cols=81  Identities=17%  Similarity=0.189  Sum_probs=42.5

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT   86 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~   86 (131)
                      ++.+ +|+.|++.+. .++.+...+  ..+++|+.|+++++ .+..+ .++..++.|+.|++.+++ +..+. ++..++.
T Consensus        91 l~~~~~l~~l~l~~n-~i~~i~~~l--~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~  163 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDN-KIEKIENLL--SSLVNLQVLDLSFN-KITKL-EGLSTLTLLKELNLSGNL-ISDIS-GLESLKS  163 (414)
T ss_pred             cccccceeeeecccc-chhhcccch--hhhhcchheecccc-ccccc-cchhhccchhhheeccCc-chhcc-CCccchh
Confidence            4445 6666666553 455554324  45667777777766 55555 245555566666666542 33332 2222444


Q ss_pred             cCeEeecCC
Q 045942           87 LKSLAIAEC   95 (131)
Q Consensus        87 L~~L~i~~~   95 (131)
                      |+.+++.++
T Consensus       164 L~~l~l~~n  172 (414)
T KOG0531|consen  164 LKLLDLSYN  172 (414)
T ss_pred             hhcccCCcc
Confidence            444444443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=93.83  E-value=0.038  Score=42.71  Aligned_cols=36  Identities=11%  Similarity=0.175  Sum_probs=22.1

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCC
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCP   48 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~   48 (131)
                      +|+.|.++.+ ++....+......++.|+.|.++.|.
T Consensus       173 ~Le~LNls~N-rl~~~~~s~~~~~l~~lK~L~l~~CG  208 (505)
T KOG3207|consen  173 SLENLNLSSN-RLSNFISSNTTLLLSHLKQLVLNSCG  208 (505)
T ss_pred             cchhcccccc-cccCCccccchhhhhhhheEEeccCC
Confidence            7888888764 34332221111466888888888883

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=92.97  E-value=0.2  Score=35.18  Aligned_cols=80  Identities=16%  Similarity=0.282  Sum_probs=50.6

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCC-cccccccccccccccCcCCC--CCCCCCCcC
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKD-LEALETLVIARCPKLSSLPE--DMHHVTTLK   88 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~-l~sL~~L~l~~c~~l~~lp~--~~~~l~~L~   88 (131)
                      +...++++++ .+..++ .+  ..++.|++|.+.++ .+.++-+.+.. ++.|+.|.+.++ .+..+.+  .+..+++|+
T Consensus        43 ~~d~iDLtdN-dl~~l~-~l--p~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   43 QFDAIDLTDN-DLRKLD-NL--PHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLE  116 (233)
T ss_pred             ccceeccccc-chhhcc-cC--CCccccceEEecCC-cceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccc
Confidence            3445555553 233332 23  46788889988877 77777655554 567888888774 4544432  345667888


Q ss_pred             eEeecCCch
Q 045942           89 SLAIAECPA   97 (131)
Q Consensus        89 ~L~i~~~~~   97 (131)
                      +|.+-++|.
T Consensus       117 ~Ltll~Npv  125 (233)
T KOG1644|consen  117 YLTLLGNPV  125 (233)
T ss_pred             eeeecCCch
Confidence            888877774

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=91.99  E-value=0.032  Score=41.47  Aligned_cols=61  Identities=20%  Similarity=0.274  Sum_probs=43.7

Q ss_pred             cCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCC---CCCCCCCcCeEeecCCc
Q 045942           34 CCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPE---DMHHVTTLKSLAIAECP   96 (131)
Q Consensus        34 ~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~---~~~~l~~L~~L~i~~~~   96 (131)
                      ...|+|..|++++|..++.- -..+..++.|++|.++.|..+.  |.   .+...++|.+|++.+|-
T Consensus       310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEecccc
Confidence            45688889999988655431 1345678999999999997542  33   34566789999998874

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=91.83  E-value=0.051  Score=41.64  Aligned_cols=82  Identities=15%  Similarity=0.199  Sum_probs=56.4

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCC-CCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPED-MHHVT   85 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~   85 (131)
                      +..+ +|++|++++. .++.+. ++  ..++.|+.|++.++ .+..+. ++..+++|+.+++.++. +..+... +..+.
T Consensus       114 l~~~~~L~~L~ls~N-~I~~i~-~l--~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~  186 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFN-KITKLE-GL--STLTLLKELNLSGN-LISDIS-GLESLKSLKLLDLSYNR-IVDIENDELSELI  186 (414)
T ss_pred             hhhhhcchheecccc-cccccc-ch--hhccchhhheeccC-cchhcc-CCccchhhhcccCCcch-hhhhhhhhhhhcc
Confidence            4456 8999999874 677764 34  56778999999988 566664 46668888888888764 3344332 35556


Q ss_pred             CcCeEeecCCc
Q 045942           86 TLKSLAIAECP   96 (131)
Q Consensus        86 ~L~~L~i~~~~   96 (131)
                      +++.+++.++.
T Consensus       187 ~l~~l~l~~n~  197 (414)
T KOG0531|consen  187 SLEELDLGGNS  197 (414)
T ss_pred             chHHHhccCCc
Confidence            77777766554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=91.23  E-value=0.091  Score=37.87  Aligned_cols=63  Identities=19%  Similarity=0.197  Sum_probs=33.1

Q ss_pred             cCCCCcCEEeecCCC--CcccCCCCCCCcccccccccccccccCcCC--CCCCCCCCcCeEeecCCch
Q 045942           34 CCTDTLQSLIIVDCP--NFMALPGSLKDLEALETLVIARCPKLSSLP--EDMHHVTTLKSLAIAECPA   97 (131)
Q Consensus        34 ~~l~~L~~L~l~~~~--~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp--~~~~~l~~L~~L~i~~~~~   97 (131)
                      ..+++|+.|.++.+.  -...++.-....++|+++.++.+. ++.+-  ..+..+.+|..|++.+|+.
T Consensus        62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~~~  128 (260)
T KOG2739|consen   62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNCSV  128 (260)
T ss_pred             CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhhcccCCc
Confidence            356677777777652  122232223345777777776642 33211  1234445566777777653

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.95  E-value=0.17  Score=22.88  Aligned_cols=18  Identities=22%  Similarity=0.377  Sum_probs=9.8

Q ss_pred             CCcCEEeecCCCCcccCCC
Q 045942           37 DTLQSLIIVDCPNFMALPG   55 (131)
Q Consensus        37 ~~L~~L~l~~~~~l~~lp~   55 (131)
                      ++|+.|+++++ .+..+|.
T Consensus         2 ~~L~~L~L~~N-~l~~lp~   19 (26)
T smart00369        2 PNLRELDLSNN-QLSSLPP   19 (26)
T ss_pred             CCCCEEECCCC-cCCcCCH
Confidence            45555665555 4555553

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.95  E-value=0.17  Score=22.88  Aligned_cols=18  Identities=22%  Similarity=0.377  Sum_probs=9.8

Q ss_pred             CCcCEEeecCCCCcccCCC
Q 045942           37 DTLQSLIIVDCPNFMALPG   55 (131)
Q Consensus        37 ~~L~~L~l~~~~~l~~lp~   55 (131)
                      ++|+.|+++++ .+..+|.
T Consensus         2 ~~L~~L~L~~N-~l~~lp~   19 (26)
T smart00370        2 PNLRELDLSNN-QLSSLPP   19 (26)
T ss_pred             CCCCEEECCCC-cCCcCCH
Confidence            45555665555 4555553

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=90.69  E-value=0.029  Score=46.22  Aligned_cols=35  Identities=23%  Similarity=0.300  Sum_probs=15.2

Q ss_pred             cCCCCcCEEeecCCCCcccCCCCCCCccccccccccc
Q 045942           34 CCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIAR   70 (131)
Q Consensus        34 ~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~   70 (131)
                      +-++.|+.|+++++ ++..+ ..+..++.|++|+|++
T Consensus       184 qll~ale~LnLshN-k~~~v-~~Lr~l~~LkhLDlsy  218 (1096)
T KOG1859|consen  184 QLLPALESLNLSHN-KFTKV-DNLRRLPKLKHLDLSY  218 (1096)
T ss_pred             HHHHHhhhhccchh-hhhhh-HHHHhccccccccccc
Confidence            33444555555544 22222 1344444455555543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=90.19  E-value=0.28  Score=35.44  Aligned_cols=83  Identities=19%  Similarity=0.215  Sum_probs=50.7

Q ss_pred             CCCC-ccceEeecCc--CCCcccchhhhccCCCCcCEEeecCCCCcc---cCCCCCCCcccccccccccccccCcCCC--
Q 045942            8 NTRP-HLRRVVIGEI--TQFLELPQWLLQCCTDTLQSLIIVDCPNFM---ALPGSLKDLEALETLVIARCPKLSSLPE--   79 (131)
Q Consensus         8 i~~l-~L~~L~i~~c--~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~---~lp~~l~~l~sL~~L~l~~c~~l~~lp~--   79 (131)
                      +..+ +|+.|.+++.  +-...++.-+  ...|+|++|.++++ +++   .+ ..+..+.+|..|++.+|+-.. +-+  
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~--e~~P~l~~l~ls~N-ki~~lstl-~pl~~l~nL~~Ldl~n~~~~~-l~dyr  135 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLA--EKAPNLKVLNLSGN-KIKDLSTL-RPLKELENLKSLDLFNCSVTN-LDDYR  135 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehh--hhCCceeEEeecCC-cccccccc-chhhhhcchhhhhcccCCccc-cccHH
Confidence            3445 8888988775  2223333333  45699999999988 343   33 246667788889888886433 211  


Q ss_pred             --CCCCCCCcCeEeecCC
Q 045942           80 --DMHHVTTLKSLAIAEC   95 (131)
Q Consensus        80 --~~~~l~~L~~L~i~~~   95 (131)
                        .+.-+++|+.|+-.++
T Consensus       136 e~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  136 EKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             HHHHHHhhhhcccccccc
Confidence              1233567777765443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=90.15  E-value=0.017  Score=47.48  Aligned_cols=38  Identities=16%  Similarity=0.167  Sum_probs=19.4

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCC
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALP   54 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp   54 (131)
                      .|+.|+++.+ ++... ..+  ..++.|++|+|+++ .++.+|
T Consensus       188 ale~LnLshN-k~~~v-~~L--r~l~~LkhLDlsyN-~L~~vp  225 (1096)
T KOG1859|consen  188 ALESLNLSHN-KFTKV-DNL--RRLPKLKHLDLSYN-CLRHVP  225 (1096)
T ss_pred             Hhhhhccchh-hhhhh-HHH--Hhcccccccccccc-hhcccc
Confidence            4555555553 23222 233  45566666666655 455554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=89.01  E-value=0.22  Score=37.23  Aligned_cols=57  Identities=19%  Similarity=0.214  Sum_probs=43.1

Q ss_pred             ccceEeecCcCCCccc-chhhhccCCCCcCEEeecCCCCcccCC---CCCCCccccccccccccc
Q 045942           12 HLRRVVIGEITQFLEL-PQWLLQCCTDTLQSLIIVDCPNFMALP---GSLKDLEALETLVIARCP   72 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~l-p~~~~~~~l~~L~~L~l~~~~~l~~lp---~~l~~l~sL~~L~l~~c~   72 (131)
                      +|..|++++|..++.= -..+  .+++.|++|.++.|..+  .|   -.++.+|+|.+|++.+|-
T Consensus       314 ~l~~LDLSD~v~l~~~~~~~~--~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  314 NLVHLDLSDSVMLKNDCFQEF--FKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             ceeeeccccccccCchHHHHH--HhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence            7888999988766531 1334  58899999999999755  23   247789999999998873

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=86.97  E-value=3.8  Score=25.41  Aligned_cols=82  Identities=15%  Similarity=0.289  Sum_probs=45.2

Q ss_pred             CCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCC-CC
Q 045942            6 RKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPED-MH   82 (131)
Q Consensus         6 ~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~-~~   82 (131)
                      ..+... +|+.+.+.+  .+..++...| ...++|+.+.+.+  .+..++. .+.+.++|+.+.+.+  .+..++.. +.
T Consensus         6 ~~F~~~~~l~~i~~~~--~~~~I~~~~F-~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~   78 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN--TIKKIGENAF-SNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFS   78 (129)
T ss_dssp             TTTTT-TT--EEEETS--T--EE-TTTT-TT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTT
T ss_pred             HHHhCCCCCCEEEECC--CeeEeChhhc-ccccccccccccc--cccccceeeeecccccccccccc--ccccccccccc
Confidence            345556 788888864  4667776554 6667899998875  3666664 355666888888854  45555554 45


Q ss_pred             CCCCcCeEeecC
Q 045942           83 HVTTLKSLAIAE   94 (131)
Q Consensus        83 ~l~~L~~L~i~~   94 (131)
                      ..++|+.+.+..
T Consensus        79 ~~~~l~~i~~~~   90 (129)
T PF13306_consen   79 NCTNLKNIDIPS   90 (129)
T ss_dssp             T-TTECEEEETT
T ss_pred             ccccccccccCc
Confidence            577888888853

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.54  E-value=0.038  Score=40.73  Aligned_cols=75  Identities=21%  Similarity=0.255  Sum_probs=51.2

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCC--CCCCCcccccccccccccccCcCCCC-----CCCC
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALP--GSLKDLEALETLVIARCPKLSSLPED-----MHHV   84 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp--~~l~~l~sL~~L~l~~c~~l~~lp~~-----~~~l   84 (131)
                      .|++|.++- +++.++-+ +  ...+.|+.|++..+ .+.++-  .-+.++++|+.|+|..+|-.+.-+..     +.-|
T Consensus        42 ~lEVLsLSv-NkIssL~p-l--~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L  116 (388)
T KOG2123|consen   42 LLEVLSLSV-NKISSLAP-L--QRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL  116 (388)
T ss_pred             cceeEEeec-cccccchh-H--HHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHc
Confidence            688888865 46666643 3  56788999988766 455554  34678999999999988866554432     2335


Q ss_pred             CCcCeEe
Q 045942           85 TTLKSLA   91 (131)
Q Consensus        85 ~~L~~L~   91 (131)
                      ++|+.|+
T Consensus       117 PnLkKLD  123 (388)
T KOG2123|consen  117 PNLKKLD  123 (388)
T ss_pred             ccchhcc
Confidence            6777665

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=84.32  E-value=0.76  Score=35.66  Aligned_cols=39  Identities=23%  Similarity=0.373  Sum_probs=25.4

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCc
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNF   50 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l   50 (131)
                      .|+.|..++|..+...+-+.+.++-.+|+.|.+..|..+
T Consensus       295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~f  333 (483)
T KOG4341|consen  295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQF  333 (483)
T ss_pred             HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchh
Confidence            677777777776655553322245677888888887644

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=83.30  E-value=1  Score=20.33  Aligned_cols=14  Identities=29%  Similarity=0.572  Sum_probs=7.3

Q ss_pred             CCcCEEeecCCCCc
Q 045942           37 DTLQSLIIVDCPNF   50 (131)
Q Consensus        37 ~~L~~L~l~~~~~l   50 (131)
                      ++|+.|++++|+.+
T Consensus         2 ~~L~~L~l~~C~~i   15 (26)
T smart00367        2 PNLRELDLSGCTNI   15 (26)
T ss_pred             CCCCEeCCCCCCCc
Confidence            34555555555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=81.48  E-value=6.1  Score=24.46  Aligned_cols=81  Identities=11%  Similarity=0.248  Sum_probs=45.4

Q ss_pred             CCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCC-CC
Q 045942            6 RKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPED-MH   82 (131)
Q Consensus         6 ~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~-~~   82 (131)
                      ..+.+. +|+.+.+.+  .+..++...+ ...++|+.+.+.+  .+..++. .+..++.|+.+.+..  .+..++.. +.
T Consensus        29 ~~F~~~~~l~~i~~~~--~~~~i~~~~F-~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~f~  101 (129)
T PF13306_consen   29 NAFSNCTSLKSINFPN--NLTSIGDNAF-SNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPS--NITEIGSSSFS  101 (129)
T ss_dssp             TTTTT-TT-SEEEESS--TTSCE-TTTT-TT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETT--T-BEEHTTTTT
T ss_pred             hhcccccccccccccc--cccccceeee-ecccccccccccc--cccccccccccccccccccccCc--cccEEchhhhc
Confidence            345666 889998865  4777876554 6666899999965  4555654 355688898888854  35556554 44


Q ss_pred             CCCCcCeEeecC
Q 045942           83 HVTTLKSLAIAE   94 (131)
Q Consensus        83 ~l~~L~~L~i~~   94 (131)
                      +. +|+.+.+.+
T Consensus       102 ~~-~l~~i~~~~  112 (129)
T PF13306_consen  102 NC-NLKEINIPS  112 (129)
T ss_dssp             T--T--EEE-TT
T ss_pred             CC-CceEEEECC
Confidence            44 777777653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=80.98  E-value=1.3  Score=34.41  Aligned_cols=14  Identities=21%  Similarity=0.323  Sum_probs=10.3

Q ss_pred             ccceEeecCcCCCc
Q 045942           12 HLRRVVIGEITQFL   25 (131)
Q Consensus        12 ~L~~L~i~~c~~l~   25 (131)
                      +|+.|.+.+|..+.
T Consensus       321 ~L~~l~l~~c~~fs  334 (483)
T KOG4341|consen  321 NLQVLELSGCQQFS  334 (483)
T ss_pred             ceEEEeccccchhh
Confidence            78888888877544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	131
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		3e-04

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 45  VDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALSERCKP 104
           +D      LP + +    LETL +AR P L +LP  +  +  L+ L+I  CP L+E  +P
Sbjct: 111 IDAAGLXELPDTXQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEP 169
Query: 105 PTGED 109
               D
Sbjct: 170 LASTD 174

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	131
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.7 bits (109), Expect = 7e-07
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 2/79 (2%)

Query: 12  HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARC 71
            L  + +   T     P          L+ LI+ DC N + LP  +  L  LE L +  C
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAP--LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287

Query: 72  PKLSSLPEDMHHVTTLKSL 90
             LS LP  +  +     +
Sbjct: 288 VNLSRLPSLIAQLPANCII 306

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.0 bits (102), Expect = 6e-06
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 23  QFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMH 82
               L   +       L+ L +  C      P        L+ L++  C  L +LP D+H
Sbjct: 217 PLSALGPAIHHLPK--LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274

Query: 83  HVTTLKSLAIAECPALSE 100
            +T L+ L +  C  LS 
Sbjct: 275 RLTQLEKLDLRGCVNLSR 292

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 2/70 (2%)

Query: 26  ELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVT 85
                L         +L +         P     L  L+ + I     L  LP+ M    
Sbjct: 70  ATADLLEDATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFA 127

Query: 86  TLKSLAIAEC 95
            L++L +A  
Sbjct: 128 GLETLTLARN 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	131
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.4
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.36
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.16
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.1
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.1
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.03
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.02
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.02
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.01
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.01
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.0
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.0
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.0
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.99
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.99
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.98
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.98
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.96
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.95
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.95
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.94
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.94
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.94
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.93
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.93
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.9
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.9
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.9
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.89
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.89
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.89
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.89
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.88
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.88
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.87
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.87
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.86
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.86
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.86
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.86
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.85
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.85
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.84
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.84
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.83
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.83
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.83
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.82
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.82
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.82
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.82
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.81
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.79
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.79
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.79
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.78
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.76
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.76
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.76
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.75
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.75
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.74
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.74
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.74
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.74
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.73
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.73
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.73
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.72
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.72
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.72
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.71
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.68
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.67
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.67
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.66
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.66
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.66
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.66
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.64
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.64
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.59
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.59
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.57
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.57
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.56
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.54
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.53
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.51
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.5
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.49
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.48
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.47
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.44
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.44
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.43
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.4
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.38
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.35
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.31
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.02
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.97
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.94
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.83
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.75
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.63
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.46
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.4
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.38
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.36
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.33
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.31
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.3
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.1
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.96
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.6
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.46
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.37
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.26
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.17
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	95.93
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.91
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.77
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.23
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.1
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	94.64
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	93.9
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	93.04
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	92.71
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	92.18
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	90.2
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	89.68
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	81.72

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.40  E-value=1e-12  Score=95.69  Aligned_cols=81  Identities=25%  Similarity=0.370  Sum_probs=45.4

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLA   91 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~   91 (131)
                      +|++|+++++ .+..+|.++  +.+++|+.|++++| .+..+|..++.+++|++|++++|...+.+|..+..+++|++|+
T Consensus       184 ~L~~L~L~~n-~l~~lp~~l--~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~  259 (328)
T 4fcg_A          184 NLQSLRLEWT-GIRSLPASI--ANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI  259 (328)
T ss_dssp             TCCEEEEEEE-CCCCCCGGG--GGCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred             CCCEEECcCC-CcCcchHhh--cCCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence            5666666554 344555555  55555666666555 3445555555555555555555555555555555555555555


Q ss_pred             ecCCc
Q 045942           92 IAECP   96 (131)
Q Consensus        92 i~~~~   96 (131)
                      +.+|.
T Consensus       260 L~~n~  264 (328)
T 4fcg_A          260 LKDCS  264 (328)
T ss_dssp             CTTCT
T ss_pred             CCCCC
Confidence            55554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.36  E-value=4.1e-12  Score=92.54  Aligned_cols=115  Identities=20%  Similarity=0.291  Sum_probs=78.3

Q ss_pred             CCCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCC
Q 045942            4 HDRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMH   82 (131)
Q Consensus         4 ~~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~   82 (131)
                      .|..++.+ +|++|++++| .+..+|..+  +.+++|+.|++++|.....+|..++.+++|+.|++.+|...+.+|..+.
T Consensus       198 lp~~l~~l~~L~~L~L~~N-~l~~l~~~l--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~  274 (328)
T 4fcg_A          198 LPASIANLQNLKSLKIRNS-PLSALGPAI--HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH  274 (328)
T ss_dssp             CCGGGGGCTTCCEEEEESS-CCCCCCGGG--GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG
T ss_pred             chHhhcCCCCCCEEEccCC-CCCcCchhh--ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh
Confidence            34556666 7777777775 455677666  6777788888877777777777777777788888877777777777777


Q ss_pred             CCCCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCccc
Q 045942           83 HVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMI  126 (131)
Q Consensus        83 ~l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~  126 (131)
                      .+++|++|++.+|..+.     .....+..+..+..+.+..+.+
T Consensus       275 ~l~~L~~L~L~~n~~~~-----~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          275 RLTQLEKLDLRGCVNLS-----RLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             GCTTCCEEECTTCTTCC-----CCCGGGGGSCTTCEEECCGGGS
T ss_pred             cCCCCCEEeCCCCCchh-----hccHHHhhccCceEEeCCHHHH
Confidence            77778888877776543     2223345555566555554443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.21  E-value=1.6e-10  Score=80.11  Aligned_cols=114  Identities=19%  Similarity=0.263  Sum_probs=72.9

Q ss_pred             CCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcCCCCCC
Q 045942            5 DRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSLPEDMH   82 (131)
Q Consensus         5 ~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~lp~~~~   82 (131)
                      +..+..+ +|++|+++++ .+..+|...+ ..+++|+.|+++++ .+..+|.. +..+++|+.|+++++ .+..+|..+.
T Consensus        57 ~~~~~~l~~L~~L~L~~N-~l~~i~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~  132 (229)
T 3e6j_A           57 PGVFDSLINLKELYLGSN-QLGALPVGVF-DSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIE  132 (229)
T ss_dssp             TTTTTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGG
T ss_pred             HHHhhCccCCcEEECCCC-CCCCcChhhc-ccCCCcCEEECCCC-cCCccChhHhCcchhhCeEeccCC-cccccCcccc
Confidence            3445666 7777777765 4566664432 56777777777776 56666543 466777777777664 4667777777


Q ss_pred             CCCCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           83 HVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        83 ~l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                      .+++|+.|++.++. +.    ......+..+.+++.+.+.++.+.
T Consensus       133 ~l~~L~~L~L~~N~-l~----~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          133 RLTHLTHLALDQNQ-LK----SIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             GCTTCSEEECCSSC-CC----CCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             cCCCCCEEECCCCc-CC----ccCHHHHhCCCCCCEEEeeCCCcc
Confidence            77777777777653 11    111233556677777777777654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.16  E-value=4.9e-11  Score=95.42  Aligned_cols=114  Identities=13%  Similarity=0.137  Sum_probs=81.0

Q ss_pred             CCCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCC
Q 045942            4 HDRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMH   82 (131)
Q Consensus         4 ~~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~   82 (131)
                      .|..++.+ +|++|+++++.....+|..+  +.+++|+.|+++++...+.+|..++.+++|+.|++++|...+.+|..+.
T Consensus       624 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l--~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~  701 (768)
T 3rgz_A          624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEI--GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS  701 (768)
T ss_dssp             CCCSCSSSBCCCEEECCSSCCBSCCCGGG--GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred             CchhhhccccccEEECcCCcccccCCHHH--hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence            35567778 89999999887666888888  8999999999999966668999999999999999999877778898899


Q ss_pred             CCCCcCeEeecCCchh---------h------------------hhcCCCCCCCCCcccCCCee
Q 045942           83 HVTTLKSLAIAECPAL---------S------------------ERCKPPTGEDWPKIAHIPEI  119 (131)
Q Consensus        83 ~l~~L~~L~i~~~~~l---------~------------------~~~~~~~~~~~~~i~~l~~l  119 (131)
                      .+++|++|+++++.-.         .                  ..|....+++|++++|+++.
T Consensus       702 ~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~  765 (768)
T 3rgz_A          702 ALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHH  765 (768)
T ss_dssp             GCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC-------------
T ss_pred             CCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCcccc
Confidence            9999999998876421         1                  12444566789989888764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.14  E-value=1.1e-10  Score=93.30  Aligned_cols=113  Identities=14%  Similarity=0.240  Sum_probs=90.5

Q ss_pred             CCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCC
Q 045942            5 DRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHH   83 (131)
Q Consensus         5 ~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~   83 (131)
                      +..+..+ +|+.|+++++ .+..+|..+  ..+++|+.|++++| .+..+|..++.+++|+.|++++|. +..+|..+..
T Consensus       217 ~~~~~~l~~L~~L~Ls~n-~l~~l~~~~--~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~  291 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNL-QIFNISANI--FKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGS  291 (727)
T ss_dssp             -----CCCCCCEEECTTS-CCSCCCGGG--GGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGG
T ss_pred             hhhhccCCCCcEEECCCC-CCCCCChhh--cCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccChhhcC
Confidence            4456677 8999999986 477899888  78999999999998 677999889999999999999864 7799999999


Q ss_pred             CCCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccCC
Q 045942           84 VTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIKS  128 (131)
Q Consensus        84 l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~  128 (131)
                      +++|++|++.+|. +.     .....+..+.++..|.+.++.+..
T Consensus       292 l~~L~~L~L~~N~-l~-----~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          292 CFQLKYFYFFDNM-VT-----TLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             GTTCSEEECCSSC-CC-----CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             CCCCCEEECCCCC-CC-----ccChhhhcCCCccEEeCCCCccCC
Confidence            9999999999874 22     123346778899999999988753

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.13  E-value=7.9e-10  Score=76.17  Aligned_cols=109  Identities=19%  Similarity=0.284  Sum_probs=54.9

Q ss_pred             CCCC-ccceEeecCcCCCccc-chhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcC-CCCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLEL-PQWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSL-PEDMHH   83 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~l-p~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~l-p~~~~~   83 (131)
                      +..+ +|++|+++++ .+..+ |..+  ..+++|+.|+++++ .+..+|.. +..+++|+.|+++++. +..+ |..+..
T Consensus        52 ~~~l~~L~~L~Ls~N-~i~~~~~~~~--~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~  126 (220)
T 2v9t_B           52 FSPYKKLRRIDLSNN-QISELAPDAF--QGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQD  126 (220)
T ss_dssp             STTCTTCCEEECCSS-CCCEECTTTT--TTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred             hhCCCCCCEEECCCC-cCCCcCHHHh--hCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCC
Confidence            4444 5555555554 23344 3333  55555666666555 45555533 3455566666665543 3333 334555


Q ss_pred             CCCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCccc
Q 045942           84 VTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMI  126 (131)
Q Consensus        84 l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~  126 (131)
                      +++|+.|++.++.--     ......+..+.+++.+.+.++.+
T Consensus       127 l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          127 LHNLNLLSLYDNKLQ-----TIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CTTCCEEECCSSCCS-----CCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCEEECCCCcCC-----EECHHHHhCCCCCCEEEeCCCCc
Confidence            556666666554311     11122344556666676666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.11  E-value=1.2e-09  Score=76.31  Aligned_cols=85  Identities=22%  Similarity=0.296  Sum_probs=40.7

Q ss_pred             CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCC-CCCCCcccccccccccccccCcCCCC-CCC
Q 045942            7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALP-GSLKDLEALETLVIARCPKLSSLPED-MHH   83 (131)
Q Consensus         7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l~~lp~~-~~~   83 (131)
                      .+..+ +|++|+++++ .+..++...+ ..+++|+.|+++++ .+..+| ..+..+++|++|+++++ .+..+|.. +..
T Consensus        54 ~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~  129 (251)
T 3m19_A           54 TFRGLTKLTWLNLDYN-QLQTLSAGVF-DDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDR  129 (251)
T ss_dssp             TTTTCTTCCEEECTTS-CCCCCCTTTT-TTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred             HhcCcccCCEEECCCC-cCCccCHhHh-ccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCCC-cCCCcChhHhcc
Confidence            45555 6666666654 3444443221 45555666665555 344443 22344555555555443 34444433 244


Q ss_pred             CCCcCeEeecCC
Q 045942           84 VTTLKSLAIAEC   95 (131)
Q Consensus        84 l~~L~~L~i~~~   95 (131)
                      +++|++|++.++
T Consensus       130 l~~L~~L~Ls~N  141 (251)
T 3m19_A          130 LTKLKELRLNTN  141 (251)
T ss_dssp             CTTCCEEECCSS
T ss_pred             CCcccEEECcCC
Confidence            445555544443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.10  E-value=1.6e-09  Score=73.63  Aligned_cols=111  Identities=20%  Similarity=0.314  Sum_probs=57.8

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcCCCC-CCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSLPED-MHHV   84 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~lp~~-~~~l   84 (131)
                      +..+ +|++|+++++ .+..+|...+ ..+++|++|+++++ .+..+|.. +..+++|++|+++++ .+..+|.. +..+
T Consensus        48 ~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l  123 (208)
T 2o6s_A           48 FDELTSLTQLYLGGN-KLQSLPNGVF-NKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKL  123 (208)
T ss_dssp             TTTCTTCSEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred             hcccccCcEEECCCC-ccCccChhhc-CCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccC
Confidence            3444 5666666553 3445553322 45566666666655 44445432 455666666666554 34445443 4555


Q ss_pred             CCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           85 TTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        85 ~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                      ++|++|++.++.- .    ......+..+.+++.+.+.++.+.
T Consensus       124 ~~L~~L~l~~N~l-~----~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A          124 TQLKDLRLYQNQL-K----SVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             TTCCEEECCSSCC-S----CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CcCCEEECCCCcc-c----eeCHHHhccCCCccEEEecCCCee
Confidence            6666666665531 1    111122455666777777766543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.10  E-value=1.4e-10  Score=78.53  Aligned_cols=86  Identities=14%  Similarity=0.129  Sum_probs=49.9

Q ss_pred             CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCC
Q 045942            7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVT   85 (131)
Q Consensus         7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~   85 (131)
                      .+..+ +|++|++++| .+..++ .+  ..+++|+.|++++|.--...|..+..+++|++|++++|..-...|..+..++
T Consensus        61 ~l~~l~~L~~L~l~~n-~~~~~~-~l--~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~  136 (197)
T 4ezg_A           61 GIEYAHNIKDLTINNI-HATNYN-PI--SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP  136 (197)
T ss_dssp             TGGGCTTCSEEEEESC-CCSCCG-GG--TTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCS
T ss_pred             HHhcCCCCCEEEccCC-CCCcch-hh--hcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCC
Confidence            34455 7777777766 454443 44  5667777777776632222455566666666666666543333444455566


Q ss_pred             CcCeEeecCCc
Q 045942           86 TLKSLAIAECP   96 (131)
Q Consensus        86 ~L~~L~i~~~~   96 (131)
                      +|++|++.+|.
T Consensus       137 ~L~~L~L~~n~  147 (197)
T 4ezg_A          137 KVNSIDLSYNG  147 (197)
T ss_dssp             SCCEEECCSCT
T ss_pred             CCCEEEccCCC
Confidence            66666666554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.09  E-value=5.7e-10  Score=86.21  Aligned_cols=113  Identities=19%  Similarity=0.220  Sum_probs=59.9

Q ss_pred             CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCC-CCC
Q 045942            7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPED-MHH   83 (131)
Q Consensus         7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~-~~~   83 (131)
                      ++.++ +|++|++++| .+..+|++.| ..+++|++|++++| .+..+|. .+..+++|++|++.+| .+..+|.. +++
T Consensus        71 ~f~~l~~L~~L~Ls~N-~i~~i~~~~f-~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~  146 (635)
T 4g8a_A           71 SFFSFPELQVLDLSRC-EIQTIEDGAY-QSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGH  146 (635)
T ss_dssp             TTTTCTTCCEEECTTC-CCCEECTTTT-TTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTT
T ss_pred             HHhCCCCCCEEECCCC-cCCCcChhHh-cCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhc
Confidence            45555 6666666554 3555554322 55666666666665 4555553 3455666666666654 34455443 556


Q ss_pred             CCCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           84 VTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        84 l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                      +++|++|++.++.--.    ...+..+..+..++.+.+.++.++
T Consensus       147 L~~L~~L~Ls~N~l~~----~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          147 LKTLKELNVAHNLIQS----FKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             CTTCCEEECCSSCCCC----CCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CcccCeeccccCcccc----CCCchhhccchhhhhhcccCcccc
Confidence            6666666665543110    011223445566666666666543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.09  E-value=6.6e-10  Score=76.56  Aligned_cols=110  Identities=9%  Similarity=0.210  Sum_probs=66.6

Q ss_pred             CCCC-ccceEeecCcCCCcccch-hhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcC-CCCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQ-WLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSL-PEDMHH   83 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~-~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~l-p~~~~~   83 (131)
                      +..+ +|++|+++++ .+..++. .+  ..+++|+.|+++++ .+..++. .+..+++|++|+++++. +..+ |..+..
T Consensus        53 ~~~l~~L~~L~L~~N-~i~~i~~~~~--~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~  127 (220)
T 2v70_A           53 FKKLPQLRKINFSNN-KITDIEEGAF--EGASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIG  127 (220)
T ss_dssp             GGGCTTCCEEECCSS-CCCEECTTTT--TTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTT
T ss_pred             hccCCCCCEEECCCC-cCCEECHHHh--CCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCC
Confidence            4455 6777777664 3555654 34  66777777777776 4555553 36667777777777654 4444 455667


Q ss_pred             CCCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           84 VTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        84 l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                      +++|+.|++.++.--     ......+..+.+++.+.+.++.+.
T Consensus       128 l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          128 LSSVRLLSLYDNQIT-----TVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CTTCSEEECTTSCCC-----CBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CccCCEEECCCCcCC-----EECHHHhcCCCCCCEEEecCcCCc
Confidence            777777777765421     111233455667777777777653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.08  E-value=1.6e-09  Score=76.85  Aligned_cols=84  Identities=19%  Similarity=0.275  Sum_probs=37.2

Q ss_pred             CCCC-ccceEeecCcCCCccc-chhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcC-CCCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLEL-PQWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSL-PEDMHH   83 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~l-p~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~l-p~~~~~   83 (131)
                      +..+ +|++|+++++ .+..+ |..+  ..+++|+.|+++++..+..+ |..+..+++|++|++.+|. +..+ |..+..
T Consensus        52 ~~~~~~L~~L~l~~n-~l~~~~~~~~--~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~  127 (285)
T 1ozn_A           52 FRACRNLTILWLHSN-VLARIDAAAF--TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRG  127 (285)
T ss_dssp             TTTCTTCCEEECCSS-CCCEECTTTT--TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTT
T ss_pred             cccCCCCCEEECCCC-ccceeCHhhc--CCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhC
Confidence            3444 5555555443 23333 2333  44555555555555334444 2334445555555554443 2222 333444


Q ss_pred             CCCcCeEeecCC
Q 045942           84 VTTLKSLAIAEC   95 (131)
Q Consensus        84 l~~L~~L~i~~~   95 (131)
                      +++|++|++.++
T Consensus       128 l~~L~~L~l~~n  139 (285)
T 1ozn_A          128 LAALQYLYLQDN  139 (285)
T ss_dssp             CTTCCEEECCSS
T ss_pred             CcCCCEEECCCC
Confidence            445555554443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.05  E-value=3.8e-09  Score=74.53  Aligned_cols=85  Identities=26%  Similarity=0.339  Sum_probs=41.6

Q ss_pred             CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCC-CCCC
Q 045942            7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPE-DMHH   83 (131)
Q Consensus         7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~-~~~~   83 (131)
                      .+..+ +|++|+++++ .+..+|...+ ..+++|++|+++++ .+..+|. .+..+++|++|++.++. +..++. .+..
T Consensus        56 ~~~~l~~L~~L~l~~n-~l~~i~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~  131 (270)
T 2o6q_A           56 AFHRLTKLRLLYLNDN-KLQTLPAGIF-KELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDS  131 (270)
T ss_dssp             SSSSCTTCCEEECCSS-CCSCCCTTTT-SSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTT
T ss_pred             HhcCCCCCCEEECCCC-ccCeeChhhh-cCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCc
Confidence            34555 6666666554 3445554332 44556666666655 3444442 23445555555555432 333332 2344


Q ss_pred             CCCcCeEeecCC
Q 045942           84 VTTLKSLAIAEC   95 (131)
Q Consensus        84 l~~L~~L~i~~~   95 (131)
                      +++|++|++.++
T Consensus       132 l~~L~~L~Ls~n  143 (270)
T 2o6q_A          132 LTKLTYLSLGYN  143 (270)
T ss_dssp             CTTCCEEECCSS
T ss_pred             CcCCCEEECCCC
Confidence            455555555443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.04  E-value=2.7e-09  Score=75.62  Aligned_cols=87  Identities=22%  Similarity=0.337  Sum_probs=55.8

Q ss_pred             CCCCCCC-ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCCC-
Q 045942            5 DRKNTRP-HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPED-   80 (131)
Q Consensus         5 ~~~i~~l-~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~~-   80 (131)
                      +..+..+ +|++|+++++..+..++ ..+  ..+++|+.|+++++ .+..+ |..+..+++|++|++.++. +..++.. 
T Consensus        73 ~~~~~~l~~L~~L~l~~n~~l~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~  148 (285)
T 1ozn_A           73 AAAFTGLALLEQLDLSDNAQLRSVDPATF--HGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNA-LQALPDDT  148 (285)
T ss_dssp             TTTTTTCTTCCEEECCSCTTCCCCCTTTT--TTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred             HhhcCCccCCCEEeCCCCCCccccCHHHh--cCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCc-ccccCHhH
Confidence            4556666 78888887765566663 444  66777777777777 34444 4456667777777776653 4455443 


Q ss_pred             CCCCCCcCeEeecCC
Q 045942           81 MHHVTTLKSLAIAEC   95 (131)
Q Consensus        81 ~~~l~~L~~L~i~~~   95 (131)
                      +..+++|++|++.++
T Consensus       149 ~~~l~~L~~L~l~~n  163 (285)
T 1ozn_A          149 FRDLGNLTHLFLHGN  163 (285)
T ss_dssp             TTTCTTCCEEECCSS
T ss_pred             hccCCCccEEECCCC
Confidence            566667777776655

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.04  E-value=6.8e-10  Score=75.06  Aligned_cols=111  Identities=13%  Similarity=0.064  Sum_probs=54.3

Q ss_pred             CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCC
Q 045942            7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVT   85 (131)
Q Consensus         7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~   85 (131)
                      .+..+ +|++|+++++.--...+..+  ..+++|+.|++++|.-....|..++.+++|++|++++|..++.+| .+..++
T Consensus        83 ~l~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~  159 (197)
T 4ezg_A           83 PISGLSNLERLRIMGKDVTSDKIPNL--SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLP  159 (197)
T ss_dssp             GGTTCTTCCEEEEECTTCBGGGSCCC--TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCS
T ss_pred             hhhcCCCCCEEEeECCccCcccChhh--cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCC
Confidence            34445 56666665543222234444  555666666666652222234445556666666666554455554 345555


Q ss_pred             CcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           86 TLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        86 ~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                      +|++|++.+|.--.       -..+..+.+++.+.+.++.+.
T Consensus       160 ~L~~L~l~~n~i~~-------~~~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          160 ELKSLNIQFDGVHD-------YRGIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             SCCEEECTTBCCCC-------CTTGGGCSSCCEEEECBC---
T ss_pred             CCCEEECCCCCCcC-------hHHhccCCCCCEEEeeCcccC
Confidence            66666665543110       012344555566666665554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.03  E-value=4.6e-10  Score=89.83  Aligned_cols=113  Identities=15%  Similarity=0.110  Sum_probs=56.2

Q ss_pred             CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCC
Q 045942            7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVT   85 (131)
Q Consensus         7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~   85 (131)
                      .++.+ +|++|++++|.....+|..+  ..+++|+.|++++|.....+|..++.+++|+.|++.+|...+.+|..+..++
T Consensus       437 ~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~  514 (768)
T 3rgz_A          437 SLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE  514 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             HHhcCCCCCEEECCCCcccCcCCHHH--cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence            34444 45555554443333444444  4555555555555533334455555555555555555544445555555555


Q ss_pred             CcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCccc
Q 045942           86 TLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMI  126 (131)
Q Consensus        86 ~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~  126 (131)
                      +|++|++.+|....     .....+..+++++.+.+.++.+
T Consensus       515 ~L~~L~L~~N~l~~-----~~p~~l~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          515 NLAILKLSNNSFSG-----NIPAELGDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             TCCEEECCSSCCEE-----ECCGGGGGCTTCCEEECCSSEE
T ss_pred             CCCEEECCCCcccC-----cCCHHHcCCCCCCEEECCCCcc
Confidence            56666555554211     1122334455666666665554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.02  E-value=8.7e-10  Score=76.44  Aligned_cols=86  Identities=17%  Similarity=0.228  Sum_probs=47.5

Q ss_pred             CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCCCCCC
Q 045942            7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPEDMHHV   84 (131)
Q Consensus         7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~~~~l   84 (131)
                      .+..+ +|++|+++++..++.++...+ ..+++|+.|++++|..+..+|. .+..+++|++|++.+|. +..+|. +..+
T Consensus        50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f-~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l  126 (239)
T 2xwt_C           50 AFSNLPNISRIYVSIDVTLQQLESHSF-YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD-LTKV  126 (239)
T ss_dssp             TTTTCTTCCEEEEECCSSCCEECTTTE-ESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC-CTTC
T ss_pred             HccCCCCCcEEeCCCCCCcceeCHhHc-CCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc-cccc
Confidence            34555 666666666543555554222 5566666666665335555552 34556666666666543 444554 4455


Q ss_pred             CCcC---eEeecCC
Q 045942           85 TTLK---SLAIAEC   95 (131)
Q Consensus        85 ~~L~---~L~i~~~   95 (131)
                      ++|+   +|++.++
T Consensus       127 ~~L~~L~~L~l~~N  140 (239)
T 2xwt_C          127 YSTDIFFILEITDN  140 (239)
T ss_dssp             CBCCSEEEEEEESC
T ss_pred             cccccccEEECCCC
Confidence            5555   6666555

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.02  E-value=1.4e-10  Score=83.71  Aligned_cols=91  Identities=19%  Similarity=0.194  Sum_probs=59.8

Q ss_pred             CCCCCCCC-ccceEeecCcCCC-cccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCC
Q 045942            4 HDRKNTRP-HLRRVVIGEITQF-LELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDM   81 (131)
Q Consensus         4 ~~~~i~~l-~L~~L~i~~c~~l-~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~   81 (131)
                      .|..+.++ +|++|+++++..+ ..+|..+  +.+++|++|+++++.-...+|..+..+++|++|++++|.....+|..+
T Consensus        68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  145 (313)
T 1ogq_A           68 IPSSLANLPYLNFLYIGGINNLVGPIPPAI--AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI  145 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCGGG--GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred             cChhHhCCCCCCeeeCCCCCcccccCChhH--hcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH
Confidence            45556666 7777777742333 3566666  677777777777773333666667777777777777765444666667


Q ss_pred             CCCCCcCeEeecCCc
Q 045942           82 HHVTTLKSLAIAECP   96 (131)
Q Consensus        82 ~~l~~L~~L~i~~~~   96 (131)
                      ..+++|++|++.++.
T Consensus       146 ~~l~~L~~L~L~~N~  160 (313)
T 1ogq_A          146 SSLPNLVGITFDGNR  160 (313)
T ss_dssp             GGCTTCCEEECCSSC
T ss_pred             hcCCCCCeEECcCCc
Confidence            777777777777654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.01  E-value=3.8e-09  Score=71.25  Aligned_cols=106  Identities=8%  Similarity=0.178  Sum_probs=74.9

Q ss_pred             ccceEeecCcCCCcccchh--hhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCC-CCCCCCCc
Q 045942           12 HLRRVVIGEITQFLELPQW--LLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPE-DMHHVTTL   87 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~--~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~-~~~~l~~L   87 (131)
                      +|++|+++++ .+..++..  +  ..+++|+.|+++++ .+..+ |..+..+++|++|+++++. +..++. .+..+++|
T Consensus        30 ~l~~L~l~~n-~i~~~~~~~~~--~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L  104 (192)
T 1w8a_A           30 HTTELLLNDN-ELGRISSDGLF--GRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQL  104 (192)
T ss_dssp             TCSEEECCSC-CCCSBCCSCSG--GGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTC
T ss_pred             CCCEEECCCC-cCCccCCcccc--ccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCC
Confidence            7888888876 56677642  5  67888899988888 55555 5678888888888888764 555554 47778888


Q ss_pred             CeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           88 KSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        88 ~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                      ++|++.++.--.     .....+..+.++..+.+.++.+.
T Consensus       105 ~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          105 KTLNLYDNQISC-----VMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CEEECCSSCCCE-----ECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CEEECCCCcCCe-----eCHHHhhcCCCCCEEEeCCCCcc
Confidence            888888765221     11234556777888888877654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.01  E-value=3.3e-10  Score=74.57  Aligned_cols=85  Identities=19%  Similarity=0.253  Sum_probs=47.1

Q ss_pred             CCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCccc-CCCCCCCcccccccccccccccCcCC--CCC
Q 045942            6 RKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMA-LPGSLKDLEALETLVIARCPKLSSLP--EDM   81 (131)
Q Consensus         6 ~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~-lp~~l~~l~sL~~L~l~~c~~l~~lp--~~~   81 (131)
                      ..+..+ +|++|++++|. +..+ ..+  ..+++|+.|++++| .+.. +|..+..+++|+.|++++| .+..+|  ..+
T Consensus        43 ~~~~~l~~L~~L~l~~n~-l~~~-~~~--~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l  116 (168)
T 2ell_A           43 GLTAEFVNLEFLSLINVG-LISV-SNL--PKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPL  116 (168)
T ss_dssp             SCCGGGGGCCEEEEESSC-CCCC-SSC--CCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGG
T ss_pred             HHHHhCCCCCEEeCcCCC-CCCh-hhh--ccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHH
Confidence            334444 66666665543 4444 334  55666666666666 3333 4444444666666666654 355554  445


Q ss_pred             CCCCCcCeEeecCCc
Q 045942           82 HHVTTLKSLAIAECP   96 (131)
Q Consensus        82 ~~l~~L~~L~i~~~~   96 (131)
                      ..+++|++|++.+|+
T Consensus       117 ~~l~~L~~L~l~~N~  131 (168)
T 2ell_A          117 KKLECLKSLDLFNCE  131 (168)
T ss_dssp             SSCSCCCEEECCSSG
T ss_pred             hcCCCCCEEEeeCCc
Confidence            566666666666654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.00  E-value=2.7e-09  Score=80.17  Aligned_cols=61  Identities=13%  Similarity=0.178  Sum_probs=28.8

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCccccccccccc
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIAR   70 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~   70 (131)
                      +..+ +|++|+++++ .+..+|...+ ..+++|+.|++++|..+..++. .+..+++|++|++.+
T Consensus       132 ~~~l~~L~~L~L~~N-~i~~~~~~~~-~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~  194 (440)
T 3zyj_A          132 FVYLSKLKELWLRNN-PIESIPSYAF-NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM  194 (440)
T ss_dssp             SCSCSSCCEEECCSC-CCCEECTTTT-TTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred             hhccccCceeeCCCC-cccccCHHHh-hhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence            4455 6666666554 3444443222 4455555555555444444442 234444444444444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.00  E-value=2.6e-09  Score=80.02  Aligned_cols=115  Identities=11%  Similarity=0.108  Sum_probs=75.8

Q ss_pred             CCCCCCC-ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCCCC
Q 045942            5 DRKNTRP-HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPEDM   81 (131)
Q Consensus         5 ~~~i~~l-~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~~~   81 (131)
                      +..+..+ +|++|+++++. +..++ ..+  ..+++|+.|++++| .+..+ |..++.+++|++|++++|......|..+
T Consensus       292 ~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~--~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  367 (455)
T 3v47_A          292 KSVFSHFTDLEQLTLAQNE-INKIDDNAF--WGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF  367 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSC-CCEECTTTT--TTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             hhhcccCCCCCEEECCCCc-ccccChhHh--cCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCcccccChhhc
Confidence            4456666 78888887764 44443 455  67788888888877 45555 4556778888888888764333336667


Q ss_pred             CCCCCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccCC
Q 045942           82 HHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIKS  128 (131)
Q Consensus        82 ~~l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~  128 (131)
                      ..+++|++|++.++.--     ......+..+++++.+.+.++.+..
T Consensus       368 ~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          368 LGLPNLKELALDTNQLK-----SVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             TTCTTCCEEECCSSCCS-----CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cccccccEEECCCCccc-----cCCHhHhccCCcccEEEccCCCccc
Confidence            77888888888876421     1112234567788888888887653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.00  E-value=6.1e-09  Score=73.61  Aligned_cols=86  Identities=22%  Similarity=0.290  Sum_probs=37.1

Q ss_pred             cCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcCCCC-CCCCCCcCeEeecCCchhhhhcCCCCCCCCC
Q 045942           34 CCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSLPED-MHHVTTLKSLAIAECPALSERCKPPTGEDWP  111 (131)
Q Consensus        34 ~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~L~i~~~~~l~~~~~~~~~~~~~  111 (131)
                      ..+++|+.|++++| .+..+|.. ++.+++|+.|++++| .+..+|.. +..+++|++|++.+|.--     ......+.
T Consensus       130 ~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~  202 (272)
T 3rfs_A          130 DKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLK-----SVPDGVFD  202 (272)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-----CCCTTTTT
T ss_pred             ccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCC-----ccCHHHHh
Confidence            34444444444444 33333322 344444444444443 23333332 344445555555444211     11112234


Q ss_pred             cccCCCeeEecCccc
Q 045942          112 KIAHIPEILLDDKMI  126 (131)
Q Consensus       112 ~i~~l~~l~~~~~~~  126 (131)
                      .+.+++.+.+.++.+
T Consensus       203 ~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          203 RLTSLQYIWLHDNPW  217 (272)
T ss_dssp             TCTTCCEEECCSSCB
T ss_pred             CCcCCCEEEccCCCc
Confidence            556666666666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.00  E-value=1.1e-08  Score=71.40  Aligned_cols=113  Identities=17%  Similarity=0.252  Sum_probs=75.6

Q ss_pred             CCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcCCC-CCC
Q 045942            6 RKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSLPE-DMH   82 (131)
Q Consensus         6 ~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~lp~-~~~   82 (131)
                      ..+..+ +|++|+++++ .+..+|...+ ..+++|+.|+++++ .+..+|.. +..+++|++|+++++ .+..+|. .+.
T Consensus        77 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~  152 (251)
T 3m19_A           77 GVFDDLTELGTLGLANN-QLASLPLGVF-DHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFD  152 (251)
T ss_dssp             TTTTTCTTCCEEECTTS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred             hHhccCCcCCEEECCCC-cccccChhHh-cccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCHHHcC
Confidence            345666 8888888775 4666664433 67788888888877 66666654 567788888888775 5666665 467


Q ss_pred             CCCCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           83 HVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        83 ~l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                      .+++|++|++.++.--     ......+..+.+++.+.+.++.+.
T Consensus       153 ~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          153 KLTNLQTLSLSTNQLQ-----SVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             TCTTCCEEECCSSCCS-----CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCcCCCEEECCCCcCC-----ccCHHHHhCCCCCCEEEeeCCcee
Confidence            7778888888776421     111234556677778888777764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.00  E-value=4.5e-10  Score=89.68  Aligned_cols=88  Identities=18%  Similarity=0.237  Sum_probs=78.0

Q ss_pred             CCCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCC
Q 045942            4 HDRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMH   82 (131)
Q Consensus         4 ~~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~   82 (131)
                      .|..+..+ +|++|+++++ .+..+|..+  +.+++|+.|++++| .+..+|..++.+++|++|++++| .+..+|..+.
T Consensus       239 l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~--~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~  313 (727)
T 4b8c_D          239 ISANIFKYDFLTRLYLNGN-SLTELPAEI--KNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFG  313 (727)
T ss_dssp             CCGGGGGCCSCSCCBCTTS-CCSCCCGGG--GGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTT
T ss_pred             CChhhcCCCCCCEEEeeCC-cCcccChhh--hCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEECCCC-CCCccChhhh
Confidence            34456667 9999999987 577999888  89999999999999 67899999999999999999986 6789999999


Q ss_pred             CCCCcCeEeecCCc
Q 045942           83 HVTTLKSLAIAECP   96 (131)
Q Consensus        83 ~l~~L~~L~i~~~~   96 (131)
                      .+++|+.|++.++.
T Consensus       314 ~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          314 NLCNLQFLGVEGNP  327 (727)
T ss_dssp             SCTTCCCEECTTSC
T ss_pred             cCCCccEEeCCCCc
Confidence            99999999999876

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.99  E-value=4.2e-10  Score=88.41  Aligned_cols=69  Identities=20%  Similarity=0.377  Sum_probs=58.5

Q ss_pred             cccchhhhccCCCCcCEEeecCCCCccc------------------CCCCCC--CcccccccccccccccCcCCCCCCCC
Q 045942           25 LELPQWLLQCCTDTLQSLIIVDCPNFMA------------------LPGSLK--DLEALETLVIARCPKLSSLPEDMHHV   84 (131)
Q Consensus        25 ~~lp~~~~~~~l~~L~~L~l~~~~~l~~------------------lp~~l~--~l~sL~~L~l~~c~~l~~lp~~~~~l   84 (131)
                      ..+|..+  +.+++|+.|+++++. +..                  +|..++  ++++|++|++++|...+.+|..+.++
T Consensus       196 ~~ip~~l--~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  272 (636)
T 4eco_A          196 TFVSKAV--MRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL  272 (636)
T ss_dssp             EEECGGG--GGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred             ccCCHHH--hcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence            3477777  788999999999884 665                  888888  89999999999888888889888899


Q ss_pred             CCcCeEeecCCc
Q 045942           85 TTLKSLAIAECP   96 (131)
Q Consensus        85 ~~L~~L~i~~~~   96 (131)
                      ++|++|++.+|.
T Consensus       273 ~~L~~L~Ls~n~  284 (636)
T 4eco_A          273 PEMQLINVACNR  284 (636)
T ss_dssp             SSCCEEECTTCT
T ss_pred             CCCCEEECcCCC
Confidence            999999998886

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.99  E-value=7.6e-09  Score=72.99  Aligned_cols=83  Identities=22%  Similarity=0.291  Sum_probs=42.5

Q ss_pred             CCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCC-CCCCC
Q 045942            9 TRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPED-MHHVT   85 (131)
Q Consensus         9 ~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~   85 (131)
                      ..+ +|++|+++++ .+..+|...+ ..+++|+.|+++++ .+..++. .++.+++|++|+++++ .+..+|.. +..++
T Consensus        82 ~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~  157 (270)
T 2o6q_A           82 KELKNLETLWVTDN-KLQALPIGVF-DQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLT  157 (270)
T ss_dssp             SSCTTCCEEECCSS-CCCCCCTTTT-TTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred             cCCCCCCEEECCCC-cCCcCCHhHc-ccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCc
Confidence            445 6677766654 3555554322 45566666666655 3444432 2445555555555554 34444433 34455


Q ss_pred             CcCeEeecCC
Q 045942           86 TLKSLAIAEC   95 (131)
Q Consensus        86 ~L~~L~i~~~   95 (131)
                      +|++|++.++
T Consensus       158 ~L~~L~L~~n  167 (270)
T 2o6q_A          158 SLKELRLYNN  167 (270)
T ss_dssp             TCCEEECCSS
T ss_pred             ccceeEecCC
Confidence            5555555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.98  E-value=5.6e-09  Score=70.60  Aligned_cols=106  Identities=13%  Similarity=0.244  Sum_probs=78.5

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCC-CCCCCcccccccccccccccCcCCC-CCCCCCCcCe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALP-GSLKDLEALETLVIARCPKLSSLPE-DMHHVTTLKS   89 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l~~lp~-~~~~l~~L~~   89 (131)
                      +|++|+++++ .+..+|..+  ..+++|+.|+++++ .+..++ ..+..+++|++|+++++ .+..++. .+..+++|+.
T Consensus        32 ~l~~L~L~~n-~i~~ip~~~--~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~  106 (193)
T 2wfh_A           32 DVTELYLDGN-QFTLVPKEL--SNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRL  106 (193)
T ss_dssp             TCCEEECCSS-CCCSCCGGG--GGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCE
T ss_pred             CCCEEECCCC-cCchhHHHh--hcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCE
Confidence            7899999875 577888777  78899999999988 676776 45788899999999886 4666654 5788889999


Q ss_pred             EeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           90 LAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        90 L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                      |++.++.--.     .....+..+.++..+.+.++.+.
T Consensus       107 L~L~~N~l~~-----~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          107 LSLHGNDISV-----VPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             EECCSSCCCB-----CCTTTTTTCTTCCEEECCSSCEE
T ss_pred             EECCCCCCCe-----eChhhhhcCccccEEEeCCCCee
Confidence            9988765211     11223556777888888877653

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.98  E-value=3e-09  Score=82.16  Aligned_cols=108  Identities=16%  Similarity=0.241  Sum_probs=86.5

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCC-CCCCCCcCe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPED-MHHVTTLKS   89 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~   89 (131)
                      ++++|+++++ .++.+|+..| ..+++|++|++++| .+..+|+ .+..+++|++|++++| .++.+|.. +..+++|++
T Consensus        53 ~~~~LdLs~N-~i~~l~~~~f-~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~  128 (635)
T 4g8a_A           53 STKNLDLSFN-PLRHLGSYSF-FSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQK  128 (635)
T ss_dssp             TCCEEECTTS-CCCEECTTTT-TTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCE
T ss_pred             CCCEEEeeCC-CCCCCCHHHH-hCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCE
Confidence            8999999985 6888986433 88999999999999 7888875 5889999999999987 58888865 788999999


Q ss_pred             EeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccCC
Q 045942           90 LAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIKS  128 (131)
Q Consensus        90 L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~  128 (131)
                      |++.+|.- .    ......+..+++++.+.+.++.+++
T Consensus       129 L~Ls~N~l-~----~l~~~~~~~L~~L~~L~Ls~N~l~~  162 (635)
T 4g8a_A          129 LVAVETNL-A----SLENFPIGHLKTLKELNVAHNLIQS  162 (635)
T ss_dssp             EECTTSCC-C----CSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred             EECCCCcC-C----CCChhhhhcCcccCeeccccCcccc
Confidence            99998752 1    1122335678889999998887764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.97  E-value=3.4e-09  Score=75.81  Aligned_cols=85  Identities=19%  Similarity=0.260  Sum_probs=48.9

Q ss_pred             CCCCC-ccceEeecCcCCCccc-chhhhccCCCCcCEEeecCCCCcc--cCCCCCCCcccccccccccccccCcC-CCCC
Q 045942            7 KNTRP-HLRRVVIGEITQFLEL-PQWLLQCCTDTLQSLIIVDCPNFM--ALPGSLKDLEALETLVIARCPKLSSL-PEDM   81 (131)
Q Consensus         7 ~i~~l-~L~~L~i~~c~~l~~l-p~~~~~~~l~~L~~L~l~~~~~l~--~lp~~l~~l~sL~~L~l~~c~~l~~l-p~~~   81 (131)
                      .+..+ +|++|+++++. +..+ +..+  ..+++|+.|+++++ .+.  .+|..+..+++|++|++++|. +..+ |..+
T Consensus       121 ~~~~l~~L~~L~l~~n~-l~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~  195 (306)
T 2z66_A          121 VFLSLRNLIYLDISHTH-TRVAFNGIF--NGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAF  195 (306)
T ss_dssp             TTTTCTTCCEEECTTSC-CEECSTTTT--TTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTT
T ss_pred             hhhhccCCCEEECCCCc-CCccchhhc--ccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHh
Confidence            45555 66777766653 3333 3334  55666777777666 333  255566666677777776653 3333 4456


Q ss_pred             CCCCCcCeEeecCCc
Q 045942           82 HHVTTLKSLAIAECP   96 (131)
Q Consensus        82 ~~l~~L~~L~i~~~~   96 (131)
                      ..+++|++|++.++.
T Consensus       196 ~~l~~L~~L~L~~N~  210 (306)
T 2z66_A          196 NSLSSLQVLNMSHNN  210 (306)
T ss_dssp             TTCTTCCEEECTTSC
T ss_pred             cCCCCCCEEECCCCc
Confidence            666666666666554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.97  E-value=1.8e-09  Score=78.85  Aligned_cols=84  Identities=20%  Similarity=0.224  Sum_probs=44.4

Q ss_pred             CCCCC-ccceEeecCcCCCcccch-hhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcCCC--CC
Q 045942            7 KNTRP-HLRRVVIGEITQFLELPQ-WLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSLPE--DM   81 (131)
Q Consensus         7 ~i~~l-~L~~L~i~~c~~l~~lp~-~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~lp~--~~   81 (131)
                      .+..+ +|++|+++++ .+..++. .+  ..+++|++|+++++ .+..+|.. ++.+++|++|+++++ .+..+|.  .+
T Consensus        71 ~~~~l~~L~~L~L~~n-~l~~~~~~~~--~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~  145 (353)
T 2z80_A           71 DLQRCVNLQALVLTSN-GINTIEEDSF--SSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLF  145 (353)
T ss_dssp             TTTTCTTCCEEECTTS-CCCEECTTTT--TTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSC
T ss_pred             HhccCCCCCEEECCCC-ccCccCHhhc--CCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhh
Confidence            35555 6666666554 3444432 33  55566666666655 44455433 455556666666554 3445554  34


Q ss_pred             CCCCCcCeEeecCC
Q 045942           82 HHVTTLKSLAIAEC   95 (131)
Q Consensus        82 ~~l~~L~~L~i~~~   95 (131)
                      ..+++|++|++.+|
T Consensus       146 ~~l~~L~~L~l~~n  159 (353)
T 2z80_A          146 SHLTKLQILRVGNM  159 (353)
T ss_dssp             TTCTTCCEEEEEES
T ss_pred             ccCCCCcEEECCCC
Confidence            55555555555554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.97  E-value=4.1e-10  Score=81.32  Aligned_cols=92  Identities=16%  Similarity=0.153  Sum_probs=71.5

Q ss_pred             CCCCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCC
Q 045942            3 HHDRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDM   81 (131)
Q Consensus         3 ~~~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~   81 (131)
                      ..|..++.+ +|++|+++++.-...+|..+  ..+++|++|+++++.-...+|..++.+++|++|++.+|.....+|..+
T Consensus        92 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l  169 (313)
T 1ogq_A           92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFL--SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY  169 (313)
T ss_dssp             CCCGGGGGCTTCSEEEEEEECCEEECCGGG--GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG
T ss_pred             cCChhHhcCCCCCEEECcCCeeCCcCCHHH--hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH
Confidence            346667788 99999998875444777777  788999999999884334778888888999999998876544778888


Q ss_pred             CCCC-CcCeEeecCCc
Q 045942           82 HHVT-TLKSLAIAECP   96 (131)
Q Consensus        82 ~~l~-~L~~L~i~~~~   96 (131)
                      ..++ +|++|++.++.
T Consensus       170 ~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          170 GSFSKLFTSMTISRNR  185 (313)
T ss_dssp             GCCCTTCCEEECCSSE
T ss_pred             hhhhhcCcEEECcCCe
Confidence            7777 88888887765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.96  E-value=3.2e-09  Score=81.49  Aligned_cols=114  Identities=15%  Similarity=0.176  Sum_probs=79.1

Q ss_pred             CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCc-ccCCCCCCCcccccccccccccccCcCCCCCCCC
Q 045942            7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNF-MALPGSLKDLEALETLVIARCPKLSSLPEDMHHV   84 (131)
Q Consensus         7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l-~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l   84 (131)
                      .+..+ +|++|++++|......|..+  ..+++|+.|++++|... ..+|..+..+++|+.|++++|......|..+..+
T Consensus       416 ~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  493 (570)
T 2z63_A          416 VFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL  493 (570)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             hhhcCCCCCEEeCcCCcccccchhhh--hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcc
Confidence            45666 88888888775444445555  67888888888888433 3577778888888888888875444446777888


Q ss_pred             CCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           85 TTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        85 ~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                      ++|++|++.+|. +..    .....+..+.+++.+.+.++.+.
T Consensus       494 ~~L~~L~l~~n~-l~~----~~~~~~~~l~~L~~L~l~~N~~~  531 (570)
T 2z63_A          494 SSLQVLNMASNQ-LKS----VPDGIFDRLTSLQKIWLHTNPWD  531 (570)
T ss_dssp             TTCCEEECCSSC-CSC----CCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCCCEEeCCCCc-CCC----CCHHHhhcccCCcEEEecCCccc
Confidence            888888888774 221    12233566778888888888765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.96  E-value=3e-09  Score=80.12  Aligned_cols=83  Identities=14%  Similarity=0.281  Sum_probs=43.3

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCCCCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPEDMHHVT   85 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~   85 (131)
                      +..+ +|++|+++++ .+..+|...+ ..+++|+.|++++|..+..++. .+..+++|+.|++++| .+..+| .+..++
T Consensus       143 ~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~  218 (452)
T 3zyi_A          143 FEYLSKLRELWLRNN-PIESIPSYAF-NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP-NLTPLV  218 (452)
T ss_dssp             SSSCTTCCEEECCSC-CCCEECTTTT-TTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCC-CCTTCT
T ss_pred             hcccCCCCEEECCCC-CcceeCHhHH-hcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccc-cccccc
Confidence            5555 6777777665 3555554322 5566666666666555555553 2445555555555543 233333 233344


Q ss_pred             CcCeEeecC
Q 045942           86 TLKSLAIAE   94 (131)
Q Consensus        86 ~L~~L~i~~   94 (131)
                      +|++|++.+
T Consensus       219 ~L~~L~Ls~  227 (452)
T 3zyi_A          219 GLEELEMSG  227 (452)
T ss_dssp             TCCEEECTT
T ss_pred             cccEEECcC
Confidence            444444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.96  E-value=3.2e-09  Score=79.52  Aligned_cols=18  Identities=11%  Similarity=0.124  Sum_probs=10.3

Q ss_pred             CCcccCCCeeEecCcccC
Q 045942          110 WPKIAHIPEILLDDKMIK  127 (131)
Q Consensus       110 ~~~i~~l~~l~~~~~~~~  127 (131)
                      +..+.+++.+.+.++.+.
T Consensus       150 ~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A          150 FLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             GGGCTTCCEEECTTCCBS
T ss_pred             cCCCCcccEEeCCCCccc
Confidence            344556666666665544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.96  E-value=5.6e-09  Score=78.88  Aligned_cols=85  Identities=19%  Similarity=0.177  Sum_probs=42.1

Q ss_pred             CCCCC-ccceEeecCcCCCccc-chhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcCCCCCCC
Q 045942            7 KNTRP-HLRRVVIGEITQFLEL-PQWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSLPEDMHH   83 (131)
Q Consensus         7 ~i~~l-~L~~L~i~~c~~l~~l-p~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~lp~~~~~   83 (131)
                      .+.++ +|++|+++++ .+..+ |..+  ..+++|+.|+++++ .+..+|.. +..+++|++|++++|......|..+..
T Consensus        51 ~~~~l~~L~~L~L~~n-~i~~~~~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~  126 (477)
T 2id5_A           51 EFASFPHLEELELNEN-IVSAVEPGAF--NNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD  126 (477)
T ss_dssp             TTTTCTTCCEEECTTS-CCCEECTTTT--TTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             HccCCCCCCEEECCCC-ccCEeChhhh--hCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHccc
Confidence            34445 5555555554 23333 2333  45555555555555 34455432 445555555555554322222334555


Q ss_pred             CCCcCeEeecCC
Q 045942           84 VTTLKSLAIAEC   95 (131)
Q Consensus        84 l~~L~~L~i~~~   95 (131)
                      +++|++|++.++
T Consensus       127 l~~L~~L~l~~n  138 (477)
T 2id5_A          127 LYNLKSLEVGDN  138 (477)
T ss_dssp             CTTCCEEEECCT
T ss_pred             cccCCEEECCCC
Confidence            555555555544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.95  E-value=5.3e-09  Score=72.34  Aligned_cols=87  Identities=20%  Similarity=0.283  Sum_probs=73.8

Q ss_pred             CCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCC-CCCC
Q 045942            6 RKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPE-DMHH   83 (131)
Q Consensus         6 ~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~-~~~~   83 (131)
                      ..+..+ +|++|+++++ .+..+|...+ ..+++|+.|+++++ .+..+|..+..+++|++|+++++ .+..+|. .+..
T Consensus        82 ~~~~~l~~L~~L~Ls~N-~l~~l~~~~~-~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~  157 (229)
T 3e6j_A           82 GVFDSLTQLTVLDLGTN-QLTVLPSAVF-DRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDR  157 (229)
T ss_dssp             TTTTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTT
T ss_pred             hhcccCCCcCEEECCCC-cCCccChhHh-CcchhhCeEeccCC-cccccCcccccCCCCCEEECCCC-cCCccCHHHHhC
Confidence            345777 9999999986 6788886543 78999999999998 78899999999999999999986 6777875 4788


Q ss_pred             CCCcCeEeecCCc
Q 045942           84 VTTLKSLAIAECP   96 (131)
Q Consensus        84 l~~L~~L~i~~~~   96 (131)
                      +++|+.|++.+++
T Consensus       158 l~~L~~L~l~~N~  170 (229)
T 3e6j_A          158 LSSLTHAYLFGNP  170 (229)
T ss_dssp             CTTCCEEECTTSC
T ss_pred             CCCCCEEEeeCCC
Confidence            9999999998776

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.95  E-value=1.2e-08  Score=67.69  Aligned_cols=107  Identities=21%  Similarity=0.323  Sum_probs=78.4

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcCCCC-CCCCCCcCe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSLPED-MHHVTTLKS   89 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~   89 (131)
                      +|++|+++++ .+..+|...+ ..+++|+.|+++++ .+..+|.. +..+++|+.|+++++ .+..+|.. +..+++|++
T Consensus        29 ~l~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~  104 (177)
T 2o6r_A           29 SATRLELESN-KLQSLPHGVF-DKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKE  104 (177)
T ss_dssp             TCSEEECCSS-CCCCCCTTTT-TTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             CCcEEEeCCC-cccEeCHHHh-cCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCE
Confidence            8899999886 4667775433 67899999999988 67777754 578899999999886 56677665 577889999


Q ss_pred             EeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           90 LAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        90 L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                      |++.++. +.    ......+..+.+++.+.+.++.+.
T Consensus       105 L~l~~N~-l~----~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A          105 LALDTNQ-LK----SVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             EECCSSC-CS----CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             EECcCCc-ce----EeCHHHhcCCcccCEEEecCCCee
Confidence            9998774 22    111223456778888888888764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.95  E-value=5.8e-09  Score=84.24  Aligned_cols=116  Identities=16%  Similarity=0.143  Sum_probs=77.6

Q ss_pred             CCCCCCC-ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCCC-
Q 045942            5 DRKNTRP-HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPED-   80 (131)
Q Consensus         5 ~~~i~~l-~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~~-   80 (131)
                      +..+.++ +|++|++++|.....++ ..+  +.+++|++|++++|. +..+ |..++.+++|++|++++|.....+|.. 
T Consensus        41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f--~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~  117 (844)
T 3j0a_A           41 ASSFPFLEQLQLLELGSQYTPLTIDKEAF--RNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG  117 (844)
T ss_dssp             SSSCSSCCSCSEEEECTTCCCCEECTTTT--SSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTC
T ss_pred             hhHCcccccCeEEeCCCCCCccccCHHHh--cCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCc
Confidence            4567777 88888888776666663 445  788888888888874 4444 677888888888888887544445554 


Q ss_pred             -CCCCCCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           81 -MHHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        81 -~~~l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                       +.++++|++|++.+|.-..    ...+..+..+++++.+.+.++.+.
T Consensus       118 ~~~~L~~L~~L~Ls~N~l~~----~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A          118 YFRNLKALTRLDLSKNQIRS----LYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             CCSSCSSCCEEEEESCCCCC----CCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             cccccCCCCEEECCCCcccc----cccchhHhhCCCCCEEECCCCcCC
Confidence             7778888888887765211    011123455666777777666554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.94  E-value=2.1e-09  Score=83.28  Aligned_cols=86  Identities=12%  Similarity=0.064  Sum_probs=41.2

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcc-cCCCCCCCcccccccccccccccCcCCCCCCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFM-ALPGSLKDLEALETLVIARCPKLSSLPEDMHHVT   85 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~-~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~   85 (131)
                      +..+ +|++|++++|......|..+  ..+++|+.|++++|.... .+|..++.+++|+.|++++|......|..+..++
T Consensus       420 ~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  497 (606)
T 3vq2_A          420 FLSLEKLLYLDISYTNTKIDFDGIF--LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH  497 (606)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             hhccccCCEEECcCCCCCccchhhh--cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc
Confidence            4444 55555555543222233334  455555555555552222 1344455555555555555533223334455555


Q ss_pred             CcCeEeecCC
Q 045942           86 TLKSLAIAEC   95 (131)
Q Consensus        86 ~L~~L~i~~~   95 (131)
                      +|++|++.+|
T Consensus       498 ~L~~L~Ls~N  507 (606)
T 3vq2_A          498 RLQLLNMSHN  507 (606)
T ss_dssp             TCCEEECCSS
T ss_pred             cCCEEECCCC
Confidence            5555555554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.94  E-value=1e-08  Score=73.42  Aligned_cols=79  Identities=24%  Similarity=0.330  Sum_probs=35.0

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCC-CCCCCcccccccccccccccCcCCCC-CCCCCCcCe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALP-GSLKDLEALETLVIARCPKLSSLPED-MHHVTTLKS   89 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~   89 (131)
                      +|++|+++++ .+..+|..+  ..+++|+.|+++++ .+..+| ..+..+++|++|+++++ .+..+|.. +..+++|+.
T Consensus        78 ~L~~L~Ls~N-~l~~l~~~~--~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~  152 (290)
T 1p9a_G           78 VLGTLDLSHN-QLQSLPLLG--QTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEK  152 (290)
T ss_dssp             TCCEEECCSS-CCSSCCCCT--TTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred             cCCEEECCCC-cCCcCchhh--ccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCE
Confidence            4444444432 233444433  44455555555544 344443 23444555555555443 23344333 334445555


Q ss_pred             EeecCC
Q 045942           90 LAIAEC   95 (131)
Q Consensus        90 L~i~~~   95 (131)
                      |++.++
T Consensus       153 L~L~~N  158 (290)
T 1p9a_G          153 LSLANN  158 (290)
T ss_dssp             EECTTS
T ss_pred             EECCCC
Confidence            555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.94  E-value=5.9e-09  Score=74.61  Aligned_cols=83  Identities=19%  Similarity=0.183  Sum_probs=50.9

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCC-CCCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPE-DMHHVT   85 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~-~~~~l~   85 (131)
                      +..+ +|++|+++++ .+..++..   ..+++|+.|+++++ .+..+|..+..+++|+.|+++++ .+..+|. .+..++
T Consensus        51 ~~~l~~L~~L~L~~n-~l~~~~~~---~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~  124 (290)
T 1p9a_G           51 LMPYTRLTQLNLDRA-ELTKLQVD---GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLG  124 (290)
T ss_dssp             GTTCTTCCEEECTTS-CCCEEECC---SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCT
T ss_pred             hhcCCCCCEEECCCC-ccCcccCC---CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCC
Confidence            3444 5555555443 34444432   35566666666666 56667766677777777877765 4566653 467777


Q ss_pred             CcCeEeecCCc
Q 045942           86 TLKSLAIAECP   96 (131)
Q Consensus        86 ~L~~L~i~~~~   96 (131)
                      +|++|++.++.
T Consensus       125 ~L~~L~L~~N~  135 (290)
T 1p9a_G          125 ELQELYLKGNE  135 (290)
T ss_dssp             TCCEEECTTSC
T ss_pred             CCCEEECCCCC
Confidence            88888877653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.93  E-value=7.1e-09  Score=71.35  Aligned_cols=89  Identities=20%  Similarity=0.279  Sum_probs=73.9

Q ss_pred             CCCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCC-C
Q 045942            4 HDRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPE-D   80 (131)
Q Consensus         4 ~~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~-~   80 (131)
                      .|..+..+ +|++|+++++ .+..+|...+ ..+++|+.|+++++ .+..+ |..+..+++|+.|+++++ .+..++. .
T Consensus        72 ~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f-~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~  147 (220)
T 2v9t_B           72 APDAFQGLRSLNSLVLYGN-KITELPKSLF-EGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGT  147 (220)
T ss_dssp             CTTTTTTCSSCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTT
T ss_pred             CHHHhhCCcCCCEEECCCC-cCCccCHhHc-cCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHH
Confidence            36678888 9999999986 6888987654 78999999999999 56666 467889999999999986 4677765 4


Q ss_pred             CCCCCCcCeEeecCCc
Q 045942           81 MHHVTTLKSLAIAECP   96 (131)
Q Consensus        81 ~~~l~~L~~L~i~~~~   96 (131)
                      +..+++|+.|++.+++
T Consensus       148 ~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          148 FSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             TTTCTTCCEEECCSSC
T ss_pred             HhCCCCCCEEEeCCCC
Confidence            7889999999998776

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.93  E-value=1.4e-08  Score=68.95  Aligned_cols=108  Identities=20%  Similarity=0.305  Sum_probs=83.6

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcCCCC-CCCCCCcCe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSLPED-MHHVTTLKS   89 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~   89 (131)
                      +|++|+++++ .+..++...+ ..+++|+.|+++++ .+..+|.. +..+++|++|++.++ .+..+|.. +..+++|++
T Consensus        29 ~l~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~  104 (208)
T 2o6s_A           29 QTTYLDLETN-SLKSLPNGVF-DELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKE  104 (208)
T ss_dssp             TCSEEECCSS-CCCCCCTTTT-TTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             CCcEEEcCCC-ccCcCChhhh-cccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCE
Confidence            8999999986 5777876543 78999999999998 67778754 678999999999986 56777765 688999999


Q ss_pred             EeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccCC
Q 045942           90 LAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIKS  128 (131)
Q Consensus        90 L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~  128 (131)
                      |++.++.- .    ......+..+.+++.+.+.++.+..
T Consensus       105 L~L~~N~l-~----~~~~~~~~~l~~L~~L~l~~N~l~~  138 (208)
T 2o6s_A          105 LALNTNQL-Q----SLPDGVFDKLTQLKDLRLYQNQLKS  138 (208)
T ss_dssp             EECCSSCC-C----CCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             EEcCCCcC-c----ccCHhHhccCCcCCEEECCCCccce
Confidence            99988742 1    1122335678888999988887653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.93  E-value=1.9e-08  Score=71.05  Aligned_cols=108  Identities=22%  Similarity=0.362  Sum_probs=51.4

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCC-CCCCCCcCe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPED-MHHVTTLKS   89 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~   89 (131)
                      +|++|++++| .+..++...+ ..+++|+.|++++| .+..+|. .++.+++|++|++.+| .+..+|.. +..+++|++
T Consensus        86 ~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~  161 (272)
T 3rfs_A           86 NLTYLILTGN-QLQSLPNGVF-DKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTE  161 (272)
T ss_dssp             TCCEEECTTS-CCCCCCTTTT-TTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             CCCEEECCCC-ccCccChhHh-cCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCE
Confidence            4444444443 2333333211 44455555555554 3333432 2445555555555554 34444433 345555555


Q ss_pred             EeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccCC
Q 045942           90 LAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIKS  128 (131)
Q Consensus        90 L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~  128 (131)
                      |++.+|.- .    ......+..+.+++.+.+.++.+..
T Consensus       162 L~l~~n~l-~----~~~~~~~~~l~~L~~L~L~~N~l~~  195 (272)
T 3rfs_A          162 LDLSYNQL-Q----SLPEGVFDKLTQLKDLRLYQNQLKS  195 (272)
T ss_dssp             EECCSSCC-C----CCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             EECCCCCc-C----ccCHHHhcCCccCCEEECCCCcCCc
Confidence            55555531 1    1112224556677777777766543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.93  E-value=9.3e-09  Score=77.44  Aligned_cols=86  Identities=20%  Similarity=0.321  Sum_probs=46.9

Q ss_pred             CCCCCC-ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcCCC-CC
Q 045942            6 RKNTRP-HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSLPE-DM   81 (131)
Q Consensus         6 ~~i~~l-~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~lp~-~~   81 (131)
                      ..+.++ +|++|+++++ .+..++ ..+  ..+++|+.|+++++ .+..+|.. +..+++|++|+++++. +..+|. .+
T Consensus        93 ~~~~~l~~L~~L~Ls~n-~i~~~~~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~  167 (452)
T 3zyi_A           93 DTFRHLHHLEVLQLGRN-SIRQIEVGAF--NGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAF  167 (452)
T ss_dssp             TTTTTCTTCCEEECCSS-CCCEECTTTT--TTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTT
T ss_pred             HHcCCCCCCCEEECCCC-ccCCcChhhc--cCcccCCEEECCCC-cCCccChhhhcccCCCCEEECCCCC-cceeCHhHH
Confidence            445555 6666666654 344444 233  55666666666665 45555532 5556666666665543 444443 34


Q ss_pred             CCCCCcCeEeecCCc
Q 045942           82 HHVTTLKSLAIAECP   96 (131)
Q Consensus        82 ~~l~~L~~L~i~~~~   96 (131)
                      ..+++|+.|++.+|.
T Consensus       168 ~~l~~L~~L~l~~~~  182 (452)
T 3zyi_A          168 NRVPSLMRLDLGELK  182 (452)
T ss_dssp             TTCTTCCEEECCCCT
T ss_pred             hcCCcccEEeCCCCC
Confidence            555566666665544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.90  E-value=2e-09  Score=74.60  Aligned_cols=86  Identities=15%  Similarity=0.178  Sum_probs=57.3

Q ss_pred             CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCccccc---ccccccccccCcCCCC-C
Q 045942            7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALE---TLVIARCPKLSSLPED-M   81 (131)
Q Consensus         7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~---~L~l~~c~~l~~lp~~-~   81 (131)
                      .+..+ +|++|++++|..++.+|...+ ..+++|+.|+++++ .+..+|. +..+++|+   .|++++++.+..+|.. +
T Consensus        75 ~f~~l~~L~~L~l~~~n~l~~i~~~~f-~~l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~  151 (239)
T 2xwt_C           75 SFYNLSKVTHIEIRNTRNLTYIDPDAL-KELPLLKFLGIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF  151 (239)
T ss_dssp             TEESCTTCCEEEEEEETTCCEECTTSE-ECCTTCCEEEEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT
T ss_pred             HcCCCcCCcEEECCCCCCeeEcCHHHh-CCCCCCCEEeCCCC-CCccccc-cccccccccccEEECCCCcchhhcCcccc
Confidence            45566 888888887667777774332 67788888888877 4666665 55666666   7777666556666553 5


Q ss_pred             CCCCCcC-eEeecCC
Q 045942           82 HHVTTLK-SLAIAEC   95 (131)
Q Consensus        82 ~~l~~L~-~L~i~~~   95 (131)
                      ..+++|+ +|++.++
T Consensus       152 ~~l~~L~~~L~l~~n  166 (239)
T 2xwt_C          152 QGLCNETLTLKLYNN  166 (239)
T ss_dssp             TTTBSSEEEEECCSC
T ss_pred             cchhcceeEEEcCCC
Confidence            5666666 6666554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.90  E-value=1.5e-08  Score=67.51  Aligned_cols=80  Identities=20%  Similarity=0.304  Sum_probs=64.4

Q ss_pred             ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcCCCC-CCCCCCcC
Q 045942           12 HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSLPED-MHHVTTLK   88 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~   88 (131)
                      +|++|+++++ .+..++ ..+  ..+++|+.|+++++ .+..+|.. +..+++|+.|+++++ .+..+|.. +..+++|+
T Consensus        34 ~L~~L~Ls~N-~l~~~~~~~~--~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~  108 (174)
T 2r9u_A           34 DKQRLWLNNN-QITKLEPGVF--DHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLT  108 (174)
T ss_dssp             TCSEEECCSS-CCCCCCTTTT--TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCS
T ss_pred             CCcEEEeCCC-CccccCHHHh--cCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCC
Confidence            8899999876 466775 445  78899999999988 78888865 578899999999875 57788775 78888999


Q ss_pred             eEeecCCc
Q 045942           89 SLAIAECP   96 (131)
Q Consensus        89 ~L~i~~~~   96 (131)
                      .|++.+++
T Consensus       109 ~L~L~~N~  116 (174)
T 2r9u_A          109 HIYLYNNP  116 (174)
T ss_dssp             EEECCSSC
T ss_pred             EEEeCCCC
Confidence            99988765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.90  E-value=2e-09  Score=70.81  Aligned_cols=108  Identities=15%  Similarity=0.188  Sum_probs=80.8

Q ss_pred             ccceEeecCcCCCc--ccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCe
Q 045942           12 HLRRVVIGEITQFL--ELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKS   89 (131)
Q Consensus        12 ~L~~L~i~~c~~l~--~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~   89 (131)
                      +|++|++++|. +.  .+|..+  ..+++|+.|++++| .+..+ ..+..+++|+.|++++|.....+|..+..+++|++
T Consensus        25 ~L~~L~l~~n~-l~~~~i~~~~--~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           25 AVRELVLDNCK-SNDGKIEGLT--AEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             SCSEEECCSCB-CBTTBCSSCC--GGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             cCCEEECCCCC-CChhhHHHHH--HhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            89999999975 55  788776  78899999999999 57777 67889999999999987543336666667899999


Q ss_pred             EeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccCC
Q 045942           90 LAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIKS  128 (131)
Q Consensus        90 L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~  128 (131)
                      |++.+|. +...   +....+..+.++..+.+.++.+..
T Consensus       100 L~Ls~N~-l~~~---~~~~~l~~l~~L~~L~l~~N~l~~  134 (168)
T 2ell_A          100 LNLSGNK-LKDI---STLEPLKKLECLKSLDLFNCEVTN  134 (168)
T ss_dssp             EECBSSS-CCSS---GGGGGGSSCSCCCEEECCSSGGGT
T ss_pred             EeccCCc-cCcc---hhHHHHhcCCCCCEEEeeCCcCcc
Confidence            9999885 2210   000234556677777777776654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.89  E-value=1.6e-08  Score=75.91  Aligned_cols=87  Identities=17%  Similarity=0.305  Sum_probs=53.9

Q ss_pred             CCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCC-CCC
Q 045942            6 RKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPE-DMH   82 (131)
Q Consensus         6 ~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~-~~~   82 (131)
                      ..+.++ +|++|+++++ .+..++...+ ..+++|+.|+++++ .+..+|. .+..+++|++|+++++. +..+|. .+.
T Consensus        82 ~~~~~l~~L~~L~Ls~n-~i~~i~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~  157 (440)
T 3zyj_A           82 NSFKHLRHLEILQLSRN-HIRTIEIGAF-NGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFN  157 (440)
T ss_dssp             TTTSSCSSCCEEECCSS-CCCEECGGGG-TTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTT
T ss_pred             HHhhCCCCCCEEECCCC-cCCccChhhc-cCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhh
Confidence            456666 7777777765 3555553322 66777777777776 5666654 46667777777776653 444544 355


Q ss_pred             CCCCcCeEeecCCc
Q 045942           83 HVTTLKSLAIAECP   96 (131)
Q Consensus        83 ~l~~L~~L~i~~~~   96 (131)
                      .+++|++|++.+|.
T Consensus       158 ~l~~L~~L~l~~~~  171 (440)
T 3zyj_A          158 RIPSLRRLDLGELK  171 (440)
T ss_dssp             TCTTCCEEECCCCT
T ss_pred             hCcccCEeCCCCCC
Confidence            66666666666544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.89  E-value=2.1e-08  Score=73.99  Aligned_cols=85  Identities=16%  Similarity=0.294  Sum_probs=39.3

Q ss_pred             CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcC-CCCCCC
Q 045942            7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSL-PEDMHH   83 (131)
Q Consensus         7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~l-p~~~~~   83 (131)
                      .+..+ +|++|+++++. +..+++..+ +.+++|+.|+++++ .+..+|.. ++.+++|++|++++|. +..+ |..+..
T Consensus        88 ~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~  163 (390)
T 3o6n_A           88 AFAYAHTIQKLYMGFNA-IRYLPPHVF-QNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQA  163 (390)
T ss_dssp             TTTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSS
T ss_pred             hccCCCCcCEEECCCCC-CCcCCHHHh-cCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccC
Confidence            34444 55555555442 333332211 44555555555555 44445433 2445555555555543 2233 223445


Q ss_pred             CCCcCeEeecCC
Q 045942           84 VTTLKSLAIAEC   95 (131)
Q Consensus        84 l~~L~~L~i~~~   95 (131)
                      +++|++|++.++
T Consensus       164 l~~L~~L~l~~n  175 (390)
T 3o6n_A          164 TTSLQNLQLSSN  175 (390)
T ss_dssp             CTTCCEEECCSS
T ss_pred             CCCCCEEECCCC
Confidence            555555555544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.89  E-value=1.4e-08  Score=78.60  Aligned_cols=85  Identities=19%  Similarity=0.225  Sum_probs=39.1

Q ss_pred             CCCCC-ccceEeecCcCCCccc-chhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcC-CCCCCC
Q 045942            7 KNTRP-HLRRVVIGEITQFLEL-PQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSL-PEDMHH   83 (131)
Q Consensus         7 ~i~~l-~L~~L~i~~c~~l~~l-p~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~l-p~~~~~   83 (131)
                      .+.++ +|++|++++|. +..+ |..+  ..+++|++|++++|.-....|..++.+++|++|++.+|. +..+ |..+..
T Consensus        52 ~~~~l~~L~~L~Ls~n~-i~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~  127 (606)
T 3t6q_A           52 TFSRLINLTFLDLTRCQ-IYWIHEDTF--QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHN  127 (606)
T ss_dssp             TSTTCTTCSEEECTTCC-CCEECTTTT--TTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTT
T ss_pred             HhccCccceEEECCCCc-cceeChhhc--cCccccCeeeCCCCcccccChhhhcccccccEeeccccC-cccCCcchhcc
Confidence            44444 55555555442 2233 2333  455555555555552222223445555555555555442 3333 333445


Q ss_pred             CCCcCeEeecCC
Q 045942           84 VTTLKSLAIAEC   95 (131)
Q Consensus        84 l~~L~~L~i~~~   95 (131)
                      +++|++|++.++
T Consensus       128 l~~L~~L~L~~n  139 (606)
T 3t6q_A          128 QKTLESLYLGSN  139 (606)
T ss_dssp             CTTCCEEECCSS
T ss_pred             CCcccEEECCCC
Confidence            555555555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.89  E-value=4.1e-09  Score=76.93  Aligned_cols=85  Identities=15%  Similarity=0.176  Sum_probs=39.5

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC--CCCCcccccccccccccccCcCC-CCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG--SLKDLEALETLVIARCPKLSSLP-EDMHH   83 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~--~l~~l~sL~~L~l~~c~~l~~lp-~~~~~   83 (131)
                      +..+ +|++|+++++ .+..+|...+ ..+++|++|+++++ .+..+|.  .+..+++|++|++.+|..+..++ ..+..
T Consensus        96 ~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  172 (353)
T 2z80_A           96 FSSLGSLEHLDLSYN-YLSNLSSSWF-KPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG  172 (353)
T ss_dssp             TTTCTTCCEEECCSS-CCSSCCHHHH-TTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred             cCCCCCCCEEECCCC-cCCcCCHhHh-CCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccC
Confidence            4444 5555555443 3444443311 44555555555554 3444443  34445555555555543344432 23444


Q ss_pred             CCCcCeEeecCC
Q 045942           84 VTTLKSLAIAEC   95 (131)
Q Consensus        84 l~~L~~L~i~~~   95 (131)
                      +++|++|++.++
T Consensus       173 l~~L~~L~l~~n  184 (353)
T 2z80_A          173 LTFLEELEIDAS  184 (353)
T ss_dssp             CCEEEEEEEEET
T ss_pred             CCCCCEEECCCC
Confidence            455555555444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.88  E-value=3.2e-09  Score=82.69  Aligned_cols=76  Identities=20%  Similarity=0.234  Sum_probs=36.7

Q ss_pred             cceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEee
Q 045942           13 LRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAI   92 (131)
Q Consensus        13 L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~i   92 (131)
                      |++|+++++ .+..+|. +  +.+++|+.|+++++ .+..+|..++.+++|+.|+++++ .+..+| .+..+++|+.|++
T Consensus       443 L~~L~Ls~n-~l~~lp~-~--~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          443 VRVLHLAHK-DLTVLCH-L--EQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLL  515 (567)
T ss_dssp             CSEEECTTS-CCSSCCC-G--GGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEEC
T ss_pred             ceEEEecCC-CCCCCcC-c--cccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEEC
Confidence            444555443 3444443 3  44555555555554 34455545555555555555443 344444 4444555555555


Q ss_pred             cCC
Q 045942           93 AEC   95 (131)
Q Consensus        93 ~~~   95 (131)
                      .++
T Consensus       516 s~N  518 (567)
T 1dce_A          516 CNN  518 (567)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.88  E-value=1.4e-08  Score=78.68  Aligned_cols=112  Identities=21%  Similarity=0.242  Sum_probs=60.0

Q ss_pred             CCCCC-ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCC-CCCC
Q 045942            7 KNTRP-HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLP-EDMH   82 (131)
Q Consensus         7 ~i~~l-~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp-~~~~   82 (131)
                      .+.++ +|++|+++++ .+..++ ..+  ..+++|++|++++| .+..+ |..++.+++|++|++++|. +..++ ..+.
T Consensus        51 ~~~~l~~L~~L~Ls~n-~l~~i~~~~~--~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~  125 (606)
T 3vq2_A           51 SFSNFSELQWLDLSRC-EIETIEDKAW--HGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIG  125 (606)
T ss_dssp             TTTTCTTCCEEECTTC-CCCEECTTTT--TTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCT
T ss_pred             hccCCccCcEEeCCCC-cccccCHHHh--hchhhcCEeECCCC-cccccChhhcCCcccCCEEEccCCc-cccccccccC
Confidence            45555 6666666655 344443 334  56666666666666 34444 5556666666666666653 33333 4466


Q ss_pred             CCCCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           83 HVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        83 ~l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                      ++++|++|++.+|.-..    ...+..+..+++++.+.+.++.+.
T Consensus       126 ~l~~L~~L~L~~n~l~~----~~lp~~~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A          126 QLITLKKLNVAHNFIHS----CKLPAYFSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             TCTTCCEEECCSSCCCC----CCCCGGGGTCTTCCEEECCSSCCC
T ss_pred             CCCCCCEEeCCCCcccc----eechHhHhhcCCCCEEEccCCcce
Confidence            66666666666553110    001223445556666666655543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.87  E-value=4.2e-09  Score=80.64  Aligned_cols=86  Identities=16%  Similarity=0.240  Sum_probs=47.9

Q ss_pred             CCCCCC-ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccC--cCCCC
Q 045942            6 RKNTRP-HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLS--SLPED   80 (131)
Q Consensus         6 ~~i~~l-~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~--~lp~~   80 (131)
                      ..+.++ +|++|+++++ .+..++ ..+  ..+++|++|++++| .+..+|.. ++.+++|++|++++|. +.  ..|..
T Consensus        44 ~~~~~l~~L~~L~Ls~n-~i~~~~~~~~--~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~  118 (549)
T 2z81_A           44 GDLRACANLQVLILKSS-RINTIEGDAF--YSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSL  118 (549)
T ss_dssp             STTSSCTTCCEEECTTS-CCCEECTTTT--TTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCS
T ss_pred             hhhhcCCcccEEECCCC-CcCccChhhc--cccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCc-ccccchhhh
Confidence            445555 6666666654 344444 334  56666666666666 44444432 5666666666666653 33  23445


Q ss_pred             CCCCCCcCeEeecCCc
Q 045942           81 MHHVTTLKSLAIAECP   96 (131)
Q Consensus        81 ~~~l~~L~~L~i~~~~   96 (131)
                      +.++++|++|++.+|.
T Consensus       119 ~~~l~~L~~L~L~~n~  134 (549)
T 2z81_A          119 FPNLTNLQTLRIGNVE  134 (549)
T ss_dssp             CTTCTTCCEEEEEESS
T ss_pred             hhccCCccEEECCCCc
Confidence            5666666666666554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.87  E-value=9.5e-09  Score=73.45  Aligned_cols=114  Identities=14%  Similarity=0.174  Sum_probs=78.7

Q ss_pred             CCCCCCC-ccceEeecCcCCCc-ccchhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCC-C
Q 045942            5 DRKNTRP-HLRRVVIGEITQFL-ELPQWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPE-D   80 (131)
Q Consensus         5 ~~~i~~l-~L~~L~i~~c~~l~-~lp~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~-~   80 (131)
                      +..+..+ +|++|+++++.... .+|..+  ..+++|+.|++++| .+..+ |..+..+++|++|++++|. +..++. .
T Consensus       143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~  218 (306)
T 2z66_A          143 NGIFNGLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFP  218 (306)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGG
T ss_pred             hhhcccCcCCCEEECCCCccccccchhHH--hhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCc-cCccChhh
Confidence            4456777 89999998864332 366666  78889999999988 55555 5678888999999998864 555554 5


Q ss_pred             CCCCCCcCeEeecCCchhhhhcCCCCCCCCCcc-cCCCeeEecCcccC
Q 045942           81 MHHVTTLKSLAIAECPALSERCKPPTGEDWPKI-AHIPEILLDDKMIK  127 (131)
Q Consensus        81 ~~~l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i-~~l~~l~~~~~~~~  127 (131)
                      +..+++|+.|++.++.-..     .....+..+ .++..+.+.++.+.
T Consensus       219 ~~~l~~L~~L~L~~N~l~~-----~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          219 YKCLNSLQVLDYSLNHIMT-----SKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             GTTCTTCCEEECTTSCCCB-----CSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             ccCcccCCEeECCCCCCcc-----cCHHHHHhhhccCCEEEccCCCee
Confidence            6778889999988875321     112223344 36777877777654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.86  E-value=4e-09  Score=68.00  Aligned_cols=108  Identities=14%  Similarity=0.152  Sum_probs=67.4

Q ss_pred             ccceEeecCcCCCc--ccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCe
Q 045942           12 HLRRVVIGEITQFL--ELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKS   89 (131)
Q Consensus        12 ~L~~L~i~~c~~l~--~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~   89 (131)
                      +|++|++++|. +.  .+|..+  ..+++|+.|++++| .+..+ ..++.+++|+.|++++|..-..+|..+..+++|++
T Consensus        18 ~l~~L~l~~n~-l~~~~~~~~~--~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           18 DVKELVLDNSR-SNEGKLEGLT--DEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GCSEEECTTCB-CBTTBCCSCC--TTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             cCeEEEccCCc-CChhHHHHHH--hhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            67788887764 44  677665  67778888888777 56666 55777777888888776433335555555677778


Q ss_pred             EeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccCC
Q 045942           90 LAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIKS  128 (131)
Q Consensus        90 L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~  128 (131)
                      |++.+|.- ....   ....+..+++++.+.+.++.+..
T Consensus        93 L~ls~N~i-~~~~---~~~~~~~l~~L~~L~l~~N~l~~  127 (149)
T 2je0_A           93 LNLSGNKI-KDLS---TIEPLKKLENLKSLDLFNCEVTN  127 (149)
T ss_dssp             EECTTSCC-CSHH---HHGGGGGCTTCCEEECTTCGGGG
T ss_pred             EECCCCcC-CChH---HHHHHhhCCCCCEEeCcCCcccc
Confidence            87776651 1000   00223456666777777666543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.86  E-value=1.9e-08  Score=66.68  Aligned_cols=87  Identities=20%  Similarity=0.355  Sum_probs=71.6

Q ss_pred             CCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcCCCC-CC
Q 045942            6 RKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSLPED-MH   82 (131)
Q Consensus         6 ~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~lp~~-~~   82 (131)
                      ..+..+ +|++|+++++ .+..+|...+ ..+++|+.|+++++ .+..+|.. +..+++|++|++.++ .+..+|.. +.
T Consensus        46 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~  121 (177)
T 2o6r_A           46 GVFDKLTQLTKLSLSQN-QIQSLPDGVF-DKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFD  121 (177)
T ss_dssp             TTTTTCTTCSEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTT
T ss_pred             HHhcCcccccEEECCCC-cceEeChhHc-cCCCccCEEECCCC-CccccCHHHhhCCcccCEEECcCC-cceEeCHHHhc
Confidence            346777 9999999986 5778886533 78999999999998 67777754 688999999999986 57788876 47


Q ss_pred             CCCCcCeEeecCCc
Q 045942           83 HVTTLKSLAIAECP   96 (131)
Q Consensus        83 ~l~~L~~L~i~~~~   96 (131)
                      .+++|++|++.+++
T Consensus       122 ~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          122 RLTSLQKIWLHTNP  135 (177)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             CCcccCEEEecCCC
Confidence            78999999999876

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.86  E-value=2.4e-08  Score=68.72  Aligned_cols=88  Identities=10%  Similarity=0.254  Sum_probs=72.5

Q ss_pred             CCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcC-CCCC
Q 045942            5 DRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSL-PEDM   81 (131)
Q Consensus         5 ~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~l-p~~~   81 (131)
                      +..+..+ +|++|+++++ .+..++...+ ..+++|++|+++++ .+..+ |..+..+++|+.|+++++. +..+ |..+
T Consensus        74 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~  149 (220)
T 2v70_A           74 EGAFEGASGVNEILLTSN-RLENVQHKMF-KGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAF  149 (220)
T ss_dssp             TTTTTTCTTCCEEECCSS-CCCCCCGGGG-TTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTT
T ss_pred             HHHhCCCCCCCEEECCCC-ccCccCHhHh-cCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCc-CCEECHHHh
Confidence            3467888 9999999986 5777776533 88999999999999 56666 5778899999999999864 6666 6778


Q ss_pred             CCCCCcCeEeecCCc
Q 045942           82 HHVTTLKSLAIAECP   96 (131)
Q Consensus        82 ~~l~~L~~L~i~~~~   96 (131)
                      ..+++|+.|++.+++
T Consensus       150 ~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          150 DTLHSLSTLNLLANP  164 (220)
T ss_dssp             TTCTTCCEEECCSCC
T ss_pred             cCCCCCCEEEecCcC
Confidence            899999999999876

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.86  E-value=2.4e-08  Score=77.81  Aligned_cols=86  Identities=15%  Similarity=0.227  Sum_probs=45.0

Q ss_pred             CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcCCCCCCCC
Q 045942            7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSLPEDMHHV   84 (131)
Q Consensus         7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~lp~~~~~l   84 (131)
                      .++.+ +|++|+++++. +..+|+..+ +.+++|+.|++++| .+..+|.. ++.+++|++|++++|......|..+..+
T Consensus        94 ~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  170 (597)
T 3oja_B           94 AFAYAHTIQKLYMGFNA-IRYLPPHVF-QNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT  170 (597)
T ss_dssp             TTTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred             HhcCCCCCCEEECCCCc-CCCCCHHHH-cCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcC
Confidence            45555 56666665543 444443222 55566666666655 45555543 3556666666665553222223345555


Q ss_pred             CCcCeEeecCC
Q 045942           85 TTLKSLAIAEC   95 (131)
Q Consensus        85 ~~L~~L~i~~~   95 (131)
                      ++|++|++.++
T Consensus       171 ~~L~~L~L~~N  181 (597)
T 3oja_B          171 TSLQNLQLSSN  181 (597)
T ss_dssp             TTCCEEECTTS
T ss_pred             CcCcEEECcCC
Confidence            66666666554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.85  E-value=1.2e-08  Score=68.73  Aligned_cols=85  Identities=21%  Similarity=0.297  Sum_probs=69.5

Q ss_pred             CCCC-ccceEeecCcCCCccc-chhhhccCCCCcCEEeecCCCCcccCC-CCCCCcccccccccccccccCcCCCCCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLEL-PQWLLQCCTDTLQSLIIVDCPNFMALP-GSLKDLEALETLVIARCPKLSSLPEDMHHV   84 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~l-p~~~~~~~l~~L~~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l   84 (131)
                      +..+ +|++|+++++ .+..+ |..+  ..+++|+.|+++++ .+..++ ..+..+++|++|+++++..-...|..+..+
T Consensus        50 ~~~l~~L~~L~Ls~N-~l~~~~~~~~--~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  125 (192)
T 1w8a_A           50 FGRLPHLVKLELKRN-QLTGIEPNAF--EGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL  125 (192)
T ss_dssp             GGGCTTCCEEECCSS-CCCCBCTTTT--TTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTC
T ss_pred             cccCCCCCEEECCCC-CCCCcCHhHc--CCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcC
Confidence            6677 9999999986 46666 5566  88999999999998 676666 458889999999999875444457778899


Q ss_pred             CCcCeEeecCCc
Q 045942           85 TTLKSLAIAECP   96 (131)
Q Consensus        85 ~~L~~L~i~~~~   96 (131)
                      ++|++|++.+++
T Consensus       126 ~~L~~L~L~~N~  137 (192)
T 1w8a_A          126 NSLTSLNLASNP  137 (192)
T ss_dssp             TTCCEEECTTCC
T ss_pred             CCCCEEEeCCCC
Confidence            999999998775

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.85  E-value=1.7e-08  Score=74.14  Aligned_cols=80  Identities=15%  Similarity=0.229  Sum_probs=39.4

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcC-CCCCCCCCCcCe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSL-PEDMHHVTTLKS   89 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~l-p~~~~~l~~L~~   89 (131)
                      +|++|+++++ .+..++...+ ..+++|+.|+++++ .+..++. .+..+++|+.|+++++. +..+ |..+..+++|+.
T Consensus        65 ~L~~L~L~~N-~i~~i~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~  140 (361)
T 2xot_A           65 NLHSLLLSHN-HLNFISSEAF-VPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQK  140 (361)
T ss_dssp             TCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCE
T ss_pred             ccCEEECCCC-cCCccChhhc-cCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCE
Confidence            5555555543 3444443211 45555555555555 3444442 34455555555555543 3333 334555556666


Q ss_pred             EeecCC
Q 045942           90 LAIAEC   95 (131)
Q Consensus        90 L~i~~~   95 (131)
                      |++.++
T Consensus       141 L~L~~N  146 (361)
T 2xot_A          141 LYLSQN  146 (361)
T ss_dssp             EECCSS
T ss_pred             EECCCC
Confidence            655554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.84  E-value=2.8e-08  Score=70.06  Aligned_cols=55  Identities=16%  Similarity=0.244  Sum_probs=23.2

Q ss_pred             ccceEeecCcCCCcccch-hhhccCCCCcCEEeecCCCCcccCCC-CCCCccccccccccc
Q 045942           12 HLRRVVIGEITQFLELPQ-WLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIAR   70 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~-~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~   70 (131)
                      +|++|+++++ .+..++. .+  ..+++|+.|++++| .+..++. .+..+++|++|++++
T Consensus        29 ~l~~L~ls~n-~l~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~   85 (276)
T 2z62_A           29 STKNLDLSFN-PLRHLGSYSF--FSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTG   85 (276)
T ss_dssp             TCCEEECTTC-CCCEECTTTT--TTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTT
T ss_pred             CccEEECCCC-cccccCHhHh--ccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCC
Confidence            3445555443 2333332 22  34444444444444 3333332 344444444444444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.84  E-value=4.6e-09  Score=81.83  Aligned_cols=84  Identities=14%  Similarity=0.175  Sum_probs=74.6

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcC--CCCCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSL--PEDMHHV   84 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~l--p~~~~~l   84 (131)
                      ++.+ +|++|+++++ .+..+|..+  +.+++|+.|+++++ .+..+| .++.+++|+.|++++| .+..+  |..+..+
T Consensus       459 ~~~l~~L~~L~Ls~N-~l~~lp~~~--~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l  532 (567)
T 1dce_A          459 LEQLLLVTHLDLSHN-RLRALPPAL--AALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSC  532 (567)
T ss_dssp             GGGGTTCCEEECCSS-CCCCCCGGG--GGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGC
T ss_pred             ccccccCcEeecCcc-cccccchhh--hcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcC
Confidence            7777 9999999986 577999988  89999999999998 788898 7999999999999986 56777  8889999


Q ss_pred             CCcCeEeecCCch
Q 045942           85 TTLKSLAIAECPA   97 (131)
Q Consensus        85 ~~L~~L~i~~~~~   97 (131)
                      ++|+.|++.+++-
T Consensus       533 ~~L~~L~L~~N~l  545 (567)
T 1dce_A          533 PRLVLLNLQGNSL  545 (567)
T ss_dssp             TTCCEEECTTSGG
T ss_pred             CCCCEEEecCCcC
Confidence            9999999998873

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.83  E-value=1.9e-08  Score=73.13  Aligned_cols=90  Identities=18%  Similarity=0.148  Sum_probs=71.6

Q ss_pred             CCCCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCC
Q 045942            3 HHDRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPED   80 (131)
Q Consensus         3 ~~~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~   80 (131)
                      ..|. +..+ +|++|++++++.+..+|...| ..+++|+.|+++++ .+..+|. .+..+++|+.|+++++ .+..+|..
T Consensus        23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~-~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~   98 (347)
T 2ifg_A           23 SLHH-LPGAENLTELYIENQQHLQHLELRDL-RGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWK   98 (347)
T ss_dssp             TTTT-SCSCSCCSEEECCSCSSCCEECGGGS-CSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS-CCSCCCST
T ss_pred             ccCC-CCCCCCeeEEEccCCCCCCCcChhHh-ccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC-ccceeCHH
Confidence            3466 7888 899999987567888885433 88999999999998 6777764 5789999999999885 68888876


Q ss_pred             CCCCCCcCeEeecCCc
Q 045942           81 MHHVTTLKSLAIAECP   96 (131)
Q Consensus        81 ~~~l~~L~~L~i~~~~   96 (131)
                      .....+|+.|++.+++
T Consensus        99 ~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           99 TVQGLSLQELVLSGNP  114 (347)
T ss_dssp             TTCSCCCCEEECCSSC
T ss_pred             HcccCCceEEEeeCCC
Confidence            5443359999998665

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.83  E-value=8.7e-09  Score=78.88  Aligned_cols=88  Identities=17%  Similarity=0.230  Sum_probs=72.3

Q ss_pred             CCCCCCC-ccceEeecCcCCCcccchh-hhccCCCCcCEEeecCCCCccc--CCCCCCCcccccccccccccccCcCCC-
Q 045942            5 DRKNTRP-HLRRVVIGEITQFLELPQW-LLQCCTDTLQSLIIVDCPNFMA--LPGSLKDLEALETLVIARCPKLSSLPE-   79 (131)
Q Consensus         5 ~~~i~~l-~L~~L~i~~c~~l~~lp~~-~~~~~l~~L~~L~l~~~~~l~~--lp~~l~~l~sL~~L~l~~c~~l~~lp~-   79 (131)
                      |..+..+ +|++|+++++ .+..++.. +  +.+++|++|++++| .+..  +|..++.+++|++|++.+|..++.+|. 
T Consensus        67 ~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~--~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~  142 (549)
T 2z81_A           67 GDAFYSLGSLEHLDLSDN-HLSSLSSSWF--GPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI  142 (549)
T ss_dssp             TTTTTTCTTCCEEECTTS-CCCSCCHHHH--TTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred             hhhccccccCCEEECCCC-ccCccCHHHh--ccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHh
Confidence            4668888 9999999987 46677755 6  89999999999998 5654  456788999999999999877777874 


Q ss_pred             CCCCCCCcCeEeecCCc
Q 045942           80 DMHHVTTLKSLAIAECP   96 (131)
Q Consensus        80 ~~~~l~~L~~L~i~~~~   96 (131)
                      .+..+++|++|++.++.
T Consensus       143 ~~~~l~~L~~L~L~~n~  159 (549)
T 2z81_A          143 DFAGLTSLNELEIKALS  159 (549)
T ss_dssp             TTTTCCEEEEEEEEETT
T ss_pred             hhhcccccCeeeccCCc
Confidence            68888999999998765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.83  E-value=1.3e-09  Score=85.60  Aligned_cols=90  Identities=16%  Similarity=0.205  Sum_probs=71.6

Q ss_pred             CCCCCC--CC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcc--cCCCCCCCc------cccccccccccc
Q 045942            4 HDRKNT--RP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFM--ALPGSLKDL------EALETLVIARCP   72 (131)
Q Consensus         4 ~~~~i~--~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~--~lp~~l~~l------~sL~~L~l~~c~   72 (131)
                      .|+.++  ++ +|++|++++|.....+|..+  +.+++|+.|++++|..+.  .+|..++.+      ++|++|++.+|.
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~  316 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL--KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN  316 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTT--TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHH--hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence            678888  88 99999999887778888888  888999999999885354  477766665      888888888764


Q ss_pred             ccCcCCC--CCCCCCCcCeEeecCCc
Q 045942           73 KLSSLPE--DMHHVTTLKSLAIAECP   96 (131)
Q Consensus        73 ~l~~lp~--~~~~l~~L~~L~i~~~~   96 (131)
                       +..+|.  .+..+++|++|++.++.
T Consensus       317 -l~~ip~~~~l~~l~~L~~L~L~~N~  341 (636)
T 4eco_A          317 -LKTFPVETSLQKMKKLGMLECLYNQ  341 (636)
T ss_dssp             -CSSCCCHHHHTTCTTCCEEECCSCC
T ss_pred             -CCccCchhhhccCCCCCEEeCcCCc
Confidence             557887  77888888888887764

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.82  E-value=1.8e-08  Score=68.04  Aligned_cols=89  Identities=20%  Similarity=0.325  Sum_probs=72.8

Q ss_pred             CCCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCC-
Q 045942            4 HDRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPED-   80 (131)
Q Consensus         4 ~~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~-   80 (131)
                      .|..+..+ +|++|+++++ .+..++...+ ..+++|+.|+++++ .+..++. .+..+++|+.|+++++ .+..+|.. 
T Consensus        46 ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f-~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~  121 (193)
T 2wfh_A           46 VPKELSNYKHLTLIDLSNN-RISTLSNQSF-SNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGA  121 (193)
T ss_dssp             CCGGGGGCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTT
T ss_pred             hHHHhhcccCCCEEECCCC-cCCEeCHhHc-cCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhh
Confidence            34567777 9999999986 5777875433 88999999999998 6777764 6889999999999986 57788775 


Q ss_pred             CCCCCCcCeEeecCCc
Q 045942           81 MHHVTTLKSLAIAECP   96 (131)
Q Consensus        81 ~~~l~~L~~L~i~~~~   96 (131)
                      +..+++|+.|++.+++
T Consensus       122 ~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          122 FNDLSALSHLAIGANP  137 (193)
T ss_dssp             TTTCTTCCEEECCSSC
T ss_pred             hhcCccccEEEeCCCC
Confidence            7789999999998765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.82  E-value=2.8e-09  Score=68.78  Aligned_cols=88  Identities=17%  Similarity=0.193  Sum_probs=72.1

Q ss_pred             CCCCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCccc-CCCCCCCcccccccccccccccCcCC--
Q 045942            3 HHDRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMA-LPGSLKDLEALETLVIARCPKLSSLP--   78 (131)
Q Consensus         3 ~~~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~-lp~~l~~l~sL~~L~l~~c~~l~~lp--   78 (131)
                      ..|..+..+ +|++|++++| .+..+ ..+  ..+++|+.|++++| .+.. +|..++.+++|++|++++|. +..+|  
T Consensus        33 ~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~--~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~  106 (149)
T 2je0_A           33 KLEGLTDEFEELEFLSTINV-GLTSI-ANL--PKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTI  106 (149)
T ss_dssp             BCCSCCTTCTTCCEEECTTS-CCCCC-TTC--CCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHH
T ss_pred             HHHHHHhhcCCCcEEECcCC-CCCCc-hhh--hcCCCCCEEECCCC-cccchHHHHhhhCCCCCEEECCCCc-CCChHHH
Confidence            345667788 9999999987 57677 556  78999999999999 5555 77667779999999999875 66654  


Q ss_pred             CCCCCCCCcCeEeecCCc
Q 045942           79 EDMHHVTTLKSLAIAECP   96 (131)
Q Consensus        79 ~~~~~l~~L~~L~i~~~~   96 (131)
                      ..+..+++|++|++.+|+
T Consensus       107 ~~~~~l~~L~~L~l~~N~  124 (149)
T 2je0_A          107 EPLKKLENLKSLDLFNCE  124 (149)
T ss_dssp             GGGGGCTTCCEEECTTCG
T ss_pred             HHHhhCCCCCEEeCcCCc
Confidence            678889999999999985

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.82  E-value=2e-08  Score=75.88  Aligned_cols=84  Identities=21%  Similarity=0.297  Sum_probs=38.0

Q ss_pred             CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCC-CCCCCcccccccccccccccCcCCC-CCCC
Q 045942            7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALP-GSLKDLEALETLVIARCPKLSSLPE-DMHH   83 (131)
Q Consensus         7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l~~lp~-~~~~   83 (131)
                      .+..+ +|++|++++|..+..+|...  ....+|+.|++++| .+..+| ..+..+++|+.|+++++. +..++. .+..
T Consensus       195 ~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~  270 (477)
T 2id5_A          195 SFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHE  270 (477)
T ss_dssp             CSCSCTTCCEEEEECCTTCCEECTTT--TTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTT
T ss_pred             hcccCcccceeeCCCCccccccCccc--ccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccChhhccc
Confidence            34445 56666666555555554433  23334555555544 344444 123444555555554432 222222 2344


Q ss_pred             CCCcCeEeecC
Q 045942           84 VTTLKSLAIAE   94 (131)
Q Consensus        84 l~~L~~L~i~~   94 (131)
                      +++|++|++.+
T Consensus       271 l~~L~~L~L~~  281 (477)
T 2id5_A          271 LLRLQEIQLVG  281 (477)
T ss_dssp             CTTCCEEECCS
T ss_pred             cccCCEEECCC
Confidence            44444444443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.82  E-value=1.4e-08  Score=79.68  Aligned_cols=84  Identities=15%  Similarity=0.132  Sum_probs=46.7

Q ss_pred             CCCC-ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCC-CCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLP-EDMHH   83 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp-~~~~~   83 (131)
                      +.++ +|++|+++++. +..++ ..+  +.+++|+.|+++++ .+..+|. .++.+++|++|++++|. +..++ ..+..
T Consensus        45 ~~~l~~L~~L~Ls~n~-l~~~~~~~~--~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~  119 (680)
T 1ziw_A           45 FTRYSQLTSLDVGFNT-ISKLEPELC--QKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVK  119 (680)
T ss_dssp             GGGGTTCSEEECCSSC-CCCCCTTHH--HHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTT
T ss_pred             HhCCCcCcEEECCCCc-cCccCHHHH--hcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCc-cCccChhHccc
Confidence            3444 55555555542 33332 333  45666666666665 4555554 36666666666666653 44444 34666


Q ss_pred             CCCcCeEeecCCc
Q 045942           84 VTTLKSLAIAECP   96 (131)
Q Consensus        84 l~~L~~L~i~~~~   96 (131)
                      +++|++|++.+|.
T Consensus       120 l~~L~~L~Ls~n~  132 (680)
T 1ziw_A          120 QKNLITLDLSHNG  132 (680)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             cCCCCEEECCCCc
Confidence            6666777666553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.81  E-value=2e-08  Score=81.83  Aligned_cols=81  Identities=15%  Similarity=0.134  Sum_probs=46.1

Q ss_pred             ccceEeecCcCCCcccchhhhcc--CCCCcCEEeecCCCCcccCCCCCCCccccccccccc------ccccCcCCCCCCC
Q 045942           12 HLRRVVIGEITQFLELPQWLLQC--CTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIAR------CPKLSSLPEDMHH   83 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~--~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~------c~~l~~lp~~~~~   83 (131)
                      +|++|++++| .+..+|..+  .  .+++|+.|++++| .+..+|..++.+++|+.|++++      |...+.+|..+..
T Consensus       729 ~L~~L~Ls~N-~L~~lp~~l--~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~  804 (876)
T 4ecn_A          729 LLTTIDLRFN-KLTSLSDDF--RATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT  804 (876)
T ss_dssp             GCCEEECCSS-CCCCCCGGG--STTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGG
T ss_pred             CccEEECCCC-CCccchHHh--hhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhc
Confidence            5566666554 344555555  4  5566666666665 4444565556666666666644      3334455555666


Q ss_pred             CCCcCeEeecCCc
Q 045942           84 VTTLKSLAIAECP   96 (131)
Q Consensus        84 l~~L~~L~i~~~~   96 (131)
                      +++|+.|++.+|.
T Consensus       805 L~~L~~L~Ls~N~  817 (876)
T 4ecn_A          805 CPSLIQLQIGSND  817 (876)
T ss_dssp             CSSCCEEECCSSC
T ss_pred             CCCCCEEECCCCC
Confidence            6666666666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.79  E-value=4.3e-08  Score=75.95  Aligned_cols=83  Identities=22%  Similarity=0.261  Sum_probs=43.3

Q ss_pred             CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCCC-CCC
Q 045942            7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPED-MHH   83 (131)
Q Consensus         7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~~-~~~   83 (131)
                      .+..+ +|++|+++++ .+..+|.++  ..+++|+.|++++| .+..+ |..+..+++|++|++.+|.....+|.. +..
T Consensus       273 ~~~~l~~L~~L~l~~n-~l~~lp~~l--~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  348 (606)
T 3t6q_A          273 TFHCFSGLQELDLTAT-HLSELPSGL--VGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN  348 (606)
T ss_dssp             TTTTCTTCSEEECTTS-CCSCCCSSC--CSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred             HhccccCCCEEeccCC-ccCCCChhh--cccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence            35556 6777777665 455666666  56666666666666 33333 334455555555555554333233322 333


Q ss_pred             CCCcCeEeec
Q 045942           84 VTTLKSLAIA   93 (131)
Q Consensus        84 l~~L~~L~i~   93 (131)
                      +++|++|++.
T Consensus       349 l~~L~~L~l~  358 (606)
T 3t6q_A          349 LENLRELDLS  358 (606)
T ss_dssp             CTTCCEEECC
T ss_pred             cCcCCEEECC
Confidence            4444444443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.79  E-value=6.7e-08  Score=71.27  Aligned_cols=106  Identities=19%  Similarity=0.321  Sum_probs=65.4

Q ss_pred             ccceEeecCcCCCcccch-hhhccCCCCcCEEeecCCCCcccCC-CCCCCcccccccccccccccCcCCCC-CCCCCCcC
Q 045942           12 HLRRVVIGEITQFLELPQ-WLLQCCTDTLQSLIIVDCPNFMALP-GSLKDLEALETLVIARCPKLSSLPED-MHHVTTLK   88 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~-~~~~~~l~~L~~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~   88 (131)
                      +|++|+++++ .+..++. .+  ..+++|+.|+++++ .+..+| ..++.+++|++|++.+| .+..+|.. +..+++|+
T Consensus        70 ~L~~L~L~~n-~i~~~~~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~  144 (390)
T 3o6n_A           70 QVELLNLNDL-QIEEIDTYAF--AYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLT  144 (390)
T ss_dssp             CCSEEECTTS-CCCEECTTTT--TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred             cCcEEECCCC-cccccChhhc--cCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCc
Confidence            6677777665 3555553 34  66777777777776 455554 44677777777777765 46667765 36677788


Q ss_pred             eEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           89 SLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        89 ~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                      +|++.++.--.     .....+..+++++.+.+.++.+.
T Consensus       145 ~L~L~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          145 TLSMSNNNLER-----IEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             EEECCSSCCCB-----CCTTTTSSCTTCCEEECCSSCCS
T ss_pred             EEECCCCccCc-----cChhhccCCCCCCEEECCCCcCC
Confidence            88777664211     11223455666677776666554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.79  E-value=2.6e-08  Score=72.17  Aligned_cols=81  Identities=17%  Similarity=0.227  Sum_probs=54.3

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT   86 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~   86 (131)
                      +..+ +|++|++++| .+..++. +  ..+++|++|++++| .+..+| .+..+++|++|++.+|. +..++. +..+++
T Consensus        62 ~~~~~~L~~L~l~~n-~i~~~~~-~--~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~  133 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGN-QITDISP-L--SNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNEDN-ISDISP-LANLTK  133 (347)
T ss_dssp             GGGCTTCCEEECCSS-CCCCCGG-G--TTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTSC-CCCCGG-GTTCTT
T ss_pred             hhhcCCccEEEccCC-ccccchh-h--hcCCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCCc-ccCchh-hccCCc
Confidence            4455 7777777776 4666665 4  67777777777777 566664 46677777777777653 555554 566677


Q ss_pred             cCeEeecCCc
Q 045942           87 LKSLAIAECP   96 (131)
Q Consensus        87 L~~L~i~~~~   96 (131)
                      |++|++.+|.
T Consensus       134 L~~L~l~~n~  143 (347)
T 4fmz_A          134 MYSLNLGANH  143 (347)
T ss_dssp             CCEEECTTCT
T ss_pred             eeEEECCCCC
Confidence            7777777664

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.78  E-value=6e-08  Score=64.17  Aligned_cols=80  Identities=18%  Similarity=0.276  Sum_probs=62.7

Q ss_pred             ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcCCCC-CCCCCCcC
Q 045942           12 HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSLPED-MHHVTTLK   88 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~   88 (131)
                      +|++|+++++ .+..++ ..+  ..+++|+.|+++++ .+..+|.. +..+++|++|+++++ .+..+|.. +..+++|+
T Consensus        31 ~l~~L~L~~N-~i~~~~~~~~--~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~  105 (170)
T 3g39_A           31 TTQVLYLYDN-QITKLEPGVF--DRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLT  105 (170)
T ss_dssp             TCSEEECCSS-CCCCCCTTTT--TTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred             CCcEEEcCCC-cCCccChhhh--cCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCC
Confidence            7888999875 566775 445  78889999999988 67777754 578899999999875 57777764 77888999


Q ss_pred             eEeecCCc
Q 045942           89 SLAIAECP   96 (131)
Q Consensus        89 ~L~i~~~~   96 (131)
                      .|++.+++
T Consensus       106 ~L~L~~N~  113 (170)
T 3g39_A          106 HIWLLNNP  113 (170)
T ss_dssp             EEECCSSC
T ss_pred             EEEeCCCC
Confidence            99988764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.77  E-value=7.5e-08  Score=63.71  Aligned_cols=104  Identities=19%  Similarity=0.276  Sum_probs=81.6

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCCC-CCCCCCcCe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPED-MHHVTTLKS   89 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~   89 (131)
                      ..+++++++. .+..+|..+    .++|+.|+++++ .+..+ |..+..+++|++|+++++ .+..+|.. +..+++|++
T Consensus        10 ~~~~l~~s~n-~l~~ip~~~----~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~   82 (170)
T 3g39_A           10 SGTTVDCSGK-SLASVPTGI----PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQ   82 (170)
T ss_dssp             ETTEEECTTS-CCSSCCSCC----CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             CCCEEEeCCC-CcCccCccC----CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCE
Confidence            5688999874 688899765    388999999998 67777 566889999999999986 57888876 578999999


Q ss_pred             EeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           90 LAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        90 L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                      |++.++.- .    ......+..+.+++.+.+.+|.+.
T Consensus        83 L~L~~N~l-~----~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           83 LSLNDNQL-K----SIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             EECCSSCC-C----CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             EECCCCcc-C----EeCHHHhcCCCCCCEEEeCCCCCC
Confidence            99998752 2    112234667888999999988764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.76  E-value=6.2e-08  Score=71.10  Aligned_cols=81  Identities=14%  Similarity=0.111  Sum_probs=66.9

Q ss_pred             ccceEeecCcCCCcccchhhhcc-CCCCcCEEeecCCCCcccCC-CCCCCcccccccccccccccCcCCC-CCCCCCCcC
Q 045942           12 HLRRVVIGEITQFLELPQWLLQC-CTDTLQSLIIVDCPNFMALP-GSLKDLEALETLVIARCPKLSSLPE-DMHHVTTLK   88 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~-~l~~L~~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l~~lp~-~~~~l~~L~   88 (131)
                      .++.|+++++ .+..++...+ . .+++|+.|+++++ .+..++ ..+..+++|++|+++++ .+..++. .+..+++|+
T Consensus        40 ~l~~L~Ls~N-~l~~l~~~~~-~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~  115 (361)
T 2xot_A           40 YTALLDLSHN-NLSRLRAEWT-PTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALE  115 (361)
T ss_dssp             TCSEEECCSS-CCCEECTTSS-SSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCC
T ss_pred             CCCEEECCCC-CCCccChhhh-hhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCC
Confidence            6899999886 6788876543 4 8899999999998 677776 45889999999999986 4777766 478899999


Q ss_pred             eEeecCCc
Q 045942           89 SLAIAECP   96 (131)
Q Consensus        89 ~L~i~~~~   96 (131)
                      .|++.++.
T Consensus       116 ~L~L~~N~  123 (361)
T 2xot_A          116 VLLLYNNH  123 (361)
T ss_dssp             EEECCSSC
T ss_pred             EEECCCCc
Confidence            99998875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.76  E-value=5.6e-09  Score=84.99  Aligned_cols=90  Identities=18%  Similarity=0.234  Sum_probs=63.2

Q ss_pred             CCCCCC--CC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcc--cCCCCCCCcc-------cccccccccc
Q 045942            4 HDRKNT--RP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFM--ALPGSLKDLE-------ALETLVIARC   71 (131)
Q Consensus         4 ~~~~i~--~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~--~lp~~l~~l~-------sL~~L~l~~c   71 (131)
                      .|+.++  ++ +|++|++++|.....+|..+  +.+++|+.|++++|..+.  .+|..++.++       +|+.|++++|
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l--~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N  558 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFL--YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN  558 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGG--GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHH--hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence            577777  78 89999998887777888777  788888888888875244  3665444443       7777777665


Q ss_pred             cccCcCCC--CCCCCCCcCeEeecCCc
Q 045942           72 PKLSSLPE--DMHHVTTLKSLAIAECP   96 (131)
Q Consensus        72 ~~l~~lp~--~~~~l~~L~~L~i~~~~   96 (131)
                      . +..+|.  .+.++++|+.|++.++.
T Consensus       559 ~-L~~ip~~~~l~~L~~L~~L~Ls~N~  584 (876)
T 4ecn_A          559 N-LEEFPASASLQKMVKLGLLDCVHNK  584 (876)
T ss_dssp             C-CCBCCCHHHHTTCTTCCEEECTTSC
T ss_pred             c-CCccCChhhhhcCCCCCEEECCCCC
Confidence            3 446666  66666677777766553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.76  E-value=1.2e-08  Score=67.61  Aligned_cols=106  Identities=11%  Similarity=0.165  Sum_probs=60.5

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCC-CCCCCcCeE
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDM-HHVTTLKSL   90 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~-~~l~~L~~L   90 (131)
                      +|++|+++++ .+..+|...  ...++|+.|+++++ .+..+ ..+..+++|+.|++++| .+..+|..+ ..+++|++|
T Consensus        20 ~L~~L~l~~n-~l~~i~~~~--~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           20 RDRELDLRGY-KIPVIENLG--ATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             SCEEEECTTS-CCCSCCCGG--GGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEE
T ss_pred             CceEEEeeCC-CCchhHHhh--hcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCEE
Confidence            6777777765 455665422  23347777777776 55555 45666777777777665 455666554 566677777


Q ss_pred             eecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           91 AIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        91 ~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                      ++.++.- .. .  +....+..+.++..+.+.++.+.
T Consensus        94 ~L~~N~i-~~-~--~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           94 ILTNNSL-VE-L--GDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             ECCSCCC-CC-G--GGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ECCCCcC-Cc-c--hhhHhhhcCCCCCEEEecCCCCC
Confidence            7766542 10 0  00012334555666666666543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.75  E-value=3.8e-08  Score=70.87  Aligned_cols=80  Identities=13%  Similarity=0.192  Sum_probs=45.6

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT   86 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~   86 (131)
                      +..+ +|++|++++| .+..++. +  ..+++|+.|++++| .+..++ .+..+++|++|++++|. +..++. +..+++
T Consensus        59 ~~~l~~L~~L~L~~n-~i~~~~~-~--~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~  130 (308)
T 1h6u_A           59 VQYLNNLIGLELKDN-QITDLAP-L--KNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLTSTQ-ITDVTP-LAGLSN  130 (308)
T ss_dssp             GGGCTTCCEEECCSS-CCCCCGG-G--TTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTTSC-CCCCGG-GTTCTT
T ss_pred             hhccCCCCEEEccCC-cCCCChh-H--ccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECCCCC-CCCchh-hcCCCC
Confidence            4445 6666666665 3555555 4  56666666666666 355554 35556666666666543 444443 455556


Q ss_pred             cCeEeecCC
Q 045942           87 LKSLAIAEC   95 (131)
Q Consensus        87 L~~L~i~~~   95 (131)
                      |++|++.+|
T Consensus       131 L~~L~l~~n  139 (308)
T 1h6u_A          131 LQVLYLDLN  139 (308)
T ss_dssp             CCEEECCSS
T ss_pred             CCEEECCCC
Confidence            666665554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.75  E-value=2.3e-08  Score=76.74  Aligned_cols=90  Identities=19%  Similarity=0.255  Sum_probs=53.8

Q ss_pred             cCCCCcCEEeecCCCCcccCCCCCCCccccccccccccccc-CcCCCCCCCCCCcCeEeecCCchhhhhcCCCCCCCCCc
Q 045942           34 CCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKL-SSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWPK  112 (131)
Q Consensus        34 ~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l-~~lp~~~~~l~~L~~L~i~~~~~l~~~~~~~~~~~~~~  112 (131)
                      ..+++|+.|++++|......|..+..+++|+.|++.+|... ..+|..+..+++|++|++.+|..-.     .....+..
T Consensus       418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~  492 (570)
T 2z63_A          418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-----LSPTAFNS  492 (570)
T ss_dssp             TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-----ECTTTTTT
T ss_pred             hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcccc-----CChhhhhc
Confidence            45566666666666333334455666667777777666533 3466666667777777776664211     11233456


Q ss_pred             ccCCCeeEecCcccCC
Q 045942          113 IAHIPEILLDDKMIKS  128 (131)
Q Consensus       113 i~~l~~l~~~~~~~~~  128 (131)
                      +.+++.+.+.++.+..
T Consensus       493 l~~L~~L~l~~n~l~~  508 (570)
T 2z63_A          493 LSSLQVLNMASNQLKS  508 (570)
T ss_dssp             CTTCCEEECCSSCCSC
T ss_pred             ccCCCEEeCCCCcCCC
Confidence            7778888888877654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.74  E-value=3.8e-09  Score=70.11  Aligned_cols=80  Identities=16%  Similarity=0.283  Sum_probs=63.5

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCC-CCcccccccccccccccCcCCC--CCCCCCCcC
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSL-KDLEALETLVIARCPKLSSLPE--DMHHVTTLK   88 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l-~~l~sL~~L~l~~c~~l~~lp~--~~~~l~~L~   88 (131)
                      +|++|+++++ .+..+ ..+  ..+++|+.|+++++ .+..+|..+ ..+++|++|++++| .+..+|.  .+..+++|+
T Consensus        43 ~L~~L~Ls~N-~l~~~-~~l--~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~  116 (176)
T 1a9n_A           43 QFDAIDFSDN-EIRKL-DGF--PLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLT  116 (176)
T ss_dssp             CCSEEECCSS-CCCEE-CCC--CCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCC
T ss_pred             CCCEEECCCC-CCCcc-ccc--ccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCC
Confidence            7889999886 46666 456  78889999999988 677787655 78889999999886 4677776  677888899


Q ss_pred             eEeecCCch
Q 045942           89 SLAIAECPA   97 (131)
Q Consensus        89 ~L~i~~~~~   97 (131)
                      .|++.+++-
T Consensus       117 ~L~l~~N~i  125 (176)
T 1a9n_A          117 YLCILRNPV  125 (176)
T ss_dssp             EEECCSSGG
T ss_pred             EEEecCCCC
Confidence            999988863

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.74  E-value=4.6e-08  Score=70.40  Aligned_cols=57  Identities=9%  Similarity=0.157  Sum_probs=25.9

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCccccccccccc
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIAR   70 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~   70 (131)
                      +..+ +|++|+++++. +..++ .+  ..+++|+.|++++| .+..++. +..+++|++|++++
T Consensus        81 ~~~l~~L~~L~L~~n~-l~~~~-~~--~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~  138 (308)
T 1h6u_A           81 LKNLTKITELELSGNP-LKNVS-AI--AGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDL  138 (308)
T ss_dssp             GTTCCSCCEEECCSCC-CSCCG-GG--TTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCS
T ss_pred             HccCCCCCEEEccCCc-CCCch-hh--cCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCC
Confidence            3444 55555555542 44443 23  44555555555554 3333332 34444444444443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.74  E-value=1.1e-07  Score=63.12  Aligned_cols=104  Identities=18%  Similarity=0.274  Sum_probs=80.7

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCCC-CCCCCCcCe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPED-MHHVTTLKS   89 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~   89 (131)
                      .-+.+++++. .+..+|..+  .  ++|+.|+++++ .+..+ |..++.+++|+.|+++++ .+..+|.. +..+++|+.
T Consensus        13 ~~~~l~~~~n-~l~~iP~~~--~--~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~   85 (174)
T 2r9u_A           13 DQTLVNCQNI-RLASVPAGI--P--TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQ   85 (174)
T ss_dssp             CSSEEECCSS-CCSSCCSCC--C--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             CCcEEEeCCC-CCCccCCCc--C--CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhE
Confidence            4467888774 688999866  3  89999999998 67777 567889999999999986 68888876 578999999


Q ss_pred             EeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           90 LAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        90 L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                      |++.++.--     ......+..+.+++.+.+.++.+.
T Consensus        86 L~L~~N~l~-----~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           86 LDLNDNHLK-----SIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             EECCSSCCC-----CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             EECCCCccc-----eeCHHHhccccCCCEEEeCCCCcc
Confidence            999987421     111223567888899999888765

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.74  E-value=8.1e-08  Score=77.57  Aligned_cols=111  Identities=13%  Similarity=0.134  Sum_probs=86.8

Q ss_pred             ccceEeecCcCCCccc-chhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCCCCCCCCCcCe
Q 045942           12 HLRRVVIGEITQFLEL-PQWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKS   89 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~l-p~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~   89 (131)
                      ++++|+++++. +..+ |..+  ..+++|+.|++++|.....+ |..++++++|++|++++|......|..+..+++|++
T Consensus        25 ~l~~LdLs~N~-i~~i~~~~~--~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  101 (844)
T 3j0a_A           25 TTERLLLSFNY-IRTVTASSF--PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE  101 (844)
T ss_dssp             TCCEEEEESCC-CCEECSSSC--SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred             CcCEEECCCCc-CCccChhHC--cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence            89999999874 6666 4566  89999999999999777777 577999999999999997644445888999999999


Q ss_pred             EeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccCC
Q 045942           90 LAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIKS  128 (131)
Q Consensus        90 L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~  128 (131)
                      |++.+|.... ..  .....+..+++++.+.+.++.+.+
T Consensus       102 L~Ls~n~l~~-~~--~~~~~~~~L~~L~~L~Ls~N~l~~  137 (844)
T 3j0a_A          102 LRLYFCGLSD-AV--LKDGYFRNLKALTRLDLSKNQIRS  137 (844)
T ss_dssp             EECTTCCCSS-CC--STTCCCSSCSSCCEEEEESCCCCC
T ss_pred             eeCcCCCCCc-cc--ccCccccccCCCCEEECCCCcccc
Confidence            9999885321 00  112235678899999998887754

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.73  E-value=8.9e-08  Score=67.48  Aligned_cols=114  Identities=21%  Similarity=0.271  Sum_probs=87.0

Q ss_pred             CCCCCC-ccceEeecCcCCCcccch-hhhccCCCCcCEEeecCCCCcccCC-CCCCCcccccccccccccccCcCCC-CC
Q 045942            6 RKNTRP-HLRRVVIGEITQFLELPQ-WLLQCCTDTLQSLIIVDCPNFMALP-GSLKDLEALETLVIARCPKLSSLPE-DM   81 (131)
Q Consensus         6 ~~i~~l-~L~~L~i~~c~~l~~lp~-~~~~~~l~~L~~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l~~lp~-~~   81 (131)
                      ..+.++ +|++|+++++ .+..++. .+  ..+++|+.|+++++ .+..++ ..+..+++|++|++.++. +..++. .+
T Consensus        46 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~  120 (276)
T 2z62_A           46 YSFFSFPELQVLDLSRC-EIQTIEDGAY--QSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETN-LASLENFPI  120 (276)
T ss_dssp             TTTTTCTTCSEEECTTC-CCCEECTTTT--TTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCC
T ss_pred             hHhccccCCcEEECCCC-cCCccCHHHc--cCCcCCCEEECCCC-ccCccChhhhcCCccccEEECCCCC-ccccCchhc
Confidence            367778 9999999987 5777775 45  78999999999998 566665 568899999999998864 555655 68


Q ss_pred             CCCCCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccCC
Q 045942           82 HHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIKS  128 (131)
Q Consensus        82 ~~l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~  128 (131)
                      ..+++|++|++.++.--.  .  .....+..+.+++.+.+.++.+..
T Consensus       121 ~~l~~L~~L~l~~n~l~~--~--~l~~~~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A          121 GHLKTLKELNVAHNLIQS--F--KLPEYFSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             TTCTTCCEEECCSSCCCC--C--CCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             ccCCCCCEEECcCCccce--e--cCchhhccCCCCCEEECCCCCCCc
Confidence            889999999999875211  0  112345667889999998887654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.73  E-value=8e-09  Score=78.74  Aligned_cols=78  Identities=22%  Similarity=0.137  Sum_probs=42.0

Q ss_pred             ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCCCCCCCCCcCe
Q 045942           12 HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKS   89 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~   89 (131)
                      +|++|+++++. +..++ ..+  ..+++|++|++++| .+..+ |..++.+++|++|+++++ .+..+|..  .+++|++
T Consensus        22 ~L~~L~Ls~n~-i~~~~~~~~--~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~   94 (520)
T 2z7x_B           22 KTTILNISQNY-ISELWTSDI--LSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKH   94 (520)
T ss_dssp             TCSEEECCSSC-CCCCCHHHH--TTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCCCSE
T ss_pred             cccEEECCCCc-ccccChhhc--cccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCC-ceeecCcc--ccCCccE
Confidence            56666666543 44444 334  55666666666665 34433 445555666666666554 34455544  4555666


Q ss_pred             EeecCCc
Q 045942           90 LAIAECP   96 (131)
Q Consensus        90 L~i~~~~   96 (131)
                      |++.+|.
T Consensus        95 L~L~~N~  101 (520)
T 2z7x_B           95 LDLSFNA  101 (520)
T ss_dssp             EECCSSC
T ss_pred             EeccCCc
Confidence            6555543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.73  E-value=6.4e-08  Score=69.85  Aligned_cols=77  Identities=25%  Similarity=0.400  Sum_probs=42.7

Q ss_pred             ccceEeecCcCCCcccch-hhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCCCCCCCCCcCe
Q 045942           12 HLRRVVIGEITQFLELPQ-WLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKS   89 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~-~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~   89 (131)
                      ++++|+++++ .+..++. .+  ..+++|++|+++++ .+..+ |..++.+++|++|+++++ .+..+|..+.  ++|++
T Consensus        53 ~l~~L~L~~n-~i~~~~~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~  125 (330)
T 1xku_A           53 DTALLDLQNN-KITEIKDGDF--KNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQE  125 (330)
T ss_dssp             TCCEEECCSS-CCCCBCTTTT--TTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCE
T ss_pred             CCeEEECCCC-cCCEeChhhh--ccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccE
Confidence            5666666664 3555554 33  56666666666666 34444 455666666666666654 3445554433  34555


Q ss_pred             EeecCC
Q 045942           90 LAIAEC   95 (131)
Q Consensus        90 L~i~~~   95 (131)
                      |++.++
T Consensus       126 L~l~~n  131 (330)
T 1xku_A          126 LRVHEN  131 (330)
T ss_dssp             EECCSS
T ss_pred             EECCCC
Confidence            544433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.72  E-value=1.2e-07  Score=68.46  Aligned_cols=83  Identities=17%  Similarity=0.288  Sum_probs=38.8

Q ss_pred             CCCCC-ccceEeecCcCCCccc-chhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCC-CCC
Q 045942            7 KNTRP-HLRRVVIGEITQFLEL-PQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPED-MHH   83 (131)
Q Consensus         7 ~i~~l-~L~~L~i~~c~~l~~l-p~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~-~~~   83 (131)
                      .+.++ +|++|+++++. +..+ |..+  ..+++|+.|+++++ .+..+|..+.  ++|++|++.++ .+..+|.. +..
T Consensus        73 ~~~~l~~L~~L~L~~n~-l~~~~~~~~--~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~  145 (332)
T 2ft3_A           73 DFKGLQHLYALVLVNNK-ISKIHEKAF--SPLRKLQKLYISKN-HLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSG  145 (332)
T ss_dssp             TTTTCTTCCEEECCSSC-CCEECGGGS--TTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSS
T ss_pred             HhhCCCCCcEEECCCCc-cCccCHhHh--hCcCCCCEEECCCC-cCCccCcccc--ccCCEEECCCC-ccCccCHhHhCC
Confidence            34444 55555554432 3333 2333  44555555555544 3444444333  45555555443 23344432 455


Q ss_pred             CCCcCeEeecCCc
Q 045942           84 VTTLKSLAIAECP   96 (131)
Q Consensus        84 l~~L~~L~i~~~~   96 (131)
                      +++|++|++.++.
T Consensus       146 l~~L~~L~l~~n~  158 (332)
T 2ft3_A          146 LRNMNCIEMGGNP  158 (332)
T ss_dssp             CSSCCEEECCSCC
T ss_pred             CccCCEEECCCCc
Confidence            5566666655543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.72  E-value=5.9e-08  Score=73.95  Aligned_cols=40  Identities=13%  Similarity=0.085  Sum_probs=21.4

Q ss_pred             CCCCCCC-ccceEeecCcCCCc---ccchhhhccCCCCcCEEeecCC
Q 045942            5 DRKNTRP-HLRRVVIGEITQFL---ELPQWLLQCCTDTLQSLIIVDC   47 (131)
Q Consensus         5 ~~~i~~l-~L~~L~i~~c~~l~---~lp~~~~~~~l~~L~~L~l~~~   47 (131)
                      |..+..+ +|++|+++++. +.   .+|..+  +.+++|+.|++++|
T Consensus       341 ~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~--~~l~~L~~L~Ls~N  384 (520)
T 2z7x_B          341 FENCGHLTELETLILQMNQ-LKELSKIAEMT--TQMKSLQQLDISQN  384 (520)
T ss_dssp             TTTCCCCSSCCEEECCSSC-CCBHHHHHHHH--TTCTTCCEEECCSS
T ss_pred             hhhhccCCCCCEEEccCCc-cCccccchHHH--hhCCCCCEEECCCC
Confidence            4445555 66666665543 33   233344  55666666666665

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.72  E-value=6.3e-08  Score=70.16  Aligned_cols=82  Identities=21%  Similarity=0.290  Sum_probs=61.5

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT   86 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~   86 (131)
                      +..+ +|++|++++| .+..++ .+  ..+++|++|++++| .+..++. +..+++|+.|++.+|..+..++. +..+++
T Consensus        84 ~~~l~~L~~L~L~~n-~i~~~~-~~--~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~  156 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTN-KITDIS-AL--QNLTNLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTG  156 (347)
T ss_dssp             GTTCTTCCEEECCSS-CCCCCG-GG--TTCTTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTT
T ss_pred             hhcCCcCCEEEccCC-cccCch-HH--cCCCcCCEEECcCC-cccCchh-hccCCceeEEECCCCCCcccccc-hhhCCC
Confidence            6667 8999999887 566665 45  78888999999888 5666765 77788888888888876665544 666777


Q ss_pred             cCeEeecCCc
Q 045942           87 LKSLAIAECP   96 (131)
Q Consensus        87 L~~L~i~~~~   96 (131)
                      |++|++.+|.
T Consensus       157 L~~L~l~~~~  166 (347)
T 4fmz_A          157 LNYLTVTESK  166 (347)
T ss_dssp             CCEEECCSSC
T ss_pred             CcEEEecCCC
Confidence            8888777664

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.71  E-value=5.1e-08  Score=75.19  Aligned_cols=78  Identities=14%  Similarity=0.129  Sum_probs=43.6

Q ss_pred             ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCCCCCCCCCcCe
Q 045942           12 HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKS   89 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~   89 (131)
                      +|++|+++++ .+..++ ..+  ..+++|+.|++++| .+..+ |..+..+++|++|+++++ .+..+|..  .+++|++
T Consensus        53 ~L~~L~Ls~N-~i~~~~~~~~--~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~  125 (562)
T 3a79_B           53 RTKALSLSQN-SISELRMPDI--SFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PMASLRH  125 (562)
T ss_dssp             TCCEEECCSS-CCCCCCGGGT--TTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CCTTCSE
T ss_pred             CcCEEECCCC-CccccChhhh--ccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--ccccCCE
Confidence            5666666654 344454 334  56666666666666 44444 344556666666666554 34555554  4556666


Q ss_pred             EeecCCc
Q 045942           90 LAIAECP   96 (131)
Q Consensus        90 L~i~~~~   96 (131)
                      |++.++.
T Consensus       126 L~Ls~N~  132 (562)
T 3a79_B          126 LDLSFND  132 (562)
T ss_dssp             EECCSSC
T ss_pred             EECCCCC
Confidence            6665543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.68  E-value=9.7e-08  Score=73.64  Aligned_cols=114  Identities=12%  Similarity=0.134  Sum_probs=69.3

Q ss_pred             CCCCCCCC-ccceEeecCcCCCcccc---hhhhccCCCCcCEEeecCCCCccc-CCCC-CCCc-----------------
Q 045942            4 HDRKNTRP-HLRRVVIGEITQFLELP---QWLLQCCTDTLQSLIIVDCPNFMA-LPGS-LKDL-----------------   60 (131)
Q Consensus         4 ~~~~i~~l-~L~~L~i~~c~~l~~lp---~~~~~~~l~~L~~L~l~~~~~l~~-lp~~-l~~l-----------------   60 (131)
                      .|..+..+ +|++|+++++ .+..++   ..+  ..+++|+.|+++++. +.. +|.. +..+                 
T Consensus       369 ~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~--~~l~~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  444 (562)
T 3a79_B          369 VFQGCSTLKRLQTLILQRN-GLKNFFKVALMT--KNMSSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSV  444 (562)
T ss_dssp             TTTTCCSCSSCCEEECCSS-CCCBTTHHHHTT--TTCTTCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSSCCCGGG
T ss_pred             hhhhhcccCCCCEEECCCC-CcCCcccchhhh--cCCCCCCEEECCCCc-CCCccChhhhcCcccCCEEECCCCCCCcch
Confidence            35566777 8888888775 455444   345  677788888888773 443 5532 3333                 


Q ss_pred             -----ccccccccccccccCcCCCCCCCCCCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           61 -----EALETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        61 -----~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                           ++|+.|++++| .++.+|..+..+++|++|++.++.-- . .   ....+..+.+++.+.+.++.+.
T Consensus       445 ~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~-~-l---~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          445 FRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQLK-S-V---PDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             GSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCCC-C-C---CTTSTTTCTTCCCEECCSCCBC
T ss_pred             hhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCCC-C-C---CHHHHhcCCCCCEEEecCCCcC
Confidence                 45566666554 45567776667777777777766421 1 1   1112455667777777777654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.67  E-value=9.9e-08  Score=68.98  Aligned_cols=60  Identities=23%  Similarity=0.283  Sum_probs=28.1

Q ss_pred             CCCC-ccceEeecCcCCCcccch-hhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccc
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQ-WLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARC   71 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~-~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c   71 (131)
                      +..+ +|++|+++++ .+..++. .+  ..+++|+.|++++| .+..+|..+..+++|+.|+++++
T Consensus       213 l~~l~~L~~L~L~~N-~l~~~~~~~~--~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N  274 (332)
T 2ft3_A          213 LLRYSKLYRLGLGHN-QIRMIENGSL--SFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN  274 (332)
T ss_dssp             STTCTTCSCCBCCSS-CCCCCCTTGG--GGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS
T ss_pred             hcCCCCCCEEECCCC-cCCcCChhHh--hCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC
Confidence            3444 4555555443 2333332 23  44455555555554 34455544555555555555443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.67  E-value=6.4e-08  Score=69.18  Aligned_cols=80  Identities=19%  Similarity=0.316  Sum_probs=40.3

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT   86 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~   86 (131)
                      +..+ +|++|+++++ .+..++. +  ..+++|+.|+++++ .+..+|. +..+++|++|++++| .+..+ ..+..+++
T Consensus        64 ~~~l~~L~~L~L~~n-~l~~~~~-l--~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~n-~i~~~-~~l~~l~~  135 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGN-KLTDIKP-L--ANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLEHN-GISDI-NGLVHLPQ  135 (291)
T ss_dssp             GGGCTTCCEEECCSS-CCCCCGG-G--TTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECTTS-CCCCC-GGGGGCTT
T ss_pred             HhcCCCCCEEEccCC-ccCCCcc-c--ccCCCCCEEECCCC-cCCCChh-hccCCCCCEEECCCC-cCCCC-hhhcCCCC
Confidence            3444 5666666554 3444444 4  55566666666655 3444432 555555555555554 23333 23344455


Q ss_pred             cCeEeecCC
Q 045942           87 LKSLAIAEC   95 (131)
Q Consensus        87 L~~L~i~~~   95 (131)
                      |+.|++.+|
T Consensus       136 L~~L~l~~n  144 (291)
T 1h6t_A          136 LESLYLGNN  144 (291)
T ss_dssp             CCEEECCSS
T ss_pred             CCEEEccCC
Confidence            555555444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.66  E-value=2.3e-07  Score=72.27  Aligned_cols=108  Identities=19%  Similarity=0.302  Sum_probs=72.0

Q ss_pred             CC-ccceEeecCcCCCcccch-hhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCC-CCCCC
Q 045942           10 RP-HLRRVVIGEITQFLELPQ-WLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPED-MHHVT   85 (131)
Q Consensus        10 ~l-~L~~L~i~~c~~l~~lp~-~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~   85 (131)
                      .+ +|++|+++++ .+..++. .+  ..+++|+.|++++| .+..+|. .++.+++|++|++++| .+..+|.. +..++
T Consensus        73 ~l~~L~~L~L~~n-~l~~~~~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~  147 (597)
T 3oja_B           73 SFRQVELLNLNDL-QIEEIDTYAF--AYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTP  147 (597)
T ss_dssp             HCCCCSEEECTTS-CCCEECTTTT--TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred             cCCCCcEEECCCC-CCCCCChHHh--cCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCC
Confidence            34 6777878775 3555654 45  67788888888887 4555553 4678888888888876 46677766 47788


Q ss_pred             CcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           86 TLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        86 ~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                      +|++|++.+|.--.     .....+..+.++..+.+.++.+.
T Consensus       148 ~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          148 KLTTLSMSNNNLER-----IEDDTFQATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             TCCEEECCSSCCCB-----CCTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCCEEEeeCCcCCC-----CChhhhhcCCcCcEEECcCCCCC
Confidence            88888888764211     11223455666777777666554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.66  E-value=2.2e-07  Score=67.04  Aligned_cols=80  Identities=16%  Similarity=0.178  Sum_probs=53.9

Q ss_pred             ccceEeecCcCCCccc-chhhhccCCCCcCEEeecCCCCcccCC-CCCCCcccccccccccccccCcCCCCCCCCCCcCe
Q 045942           12 HLRRVVIGEITQFLEL-PQWLLQCCTDTLQSLIIVDCPNFMALP-GSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKS   89 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~l-p~~~~~~~l~~L~~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~   89 (131)
                      +|++|+++++. +..+ |..+  ..+++|+.|+++++ .+..++ ..+..+++|+.|++++| .+..+|..+..+++|++
T Consensus       193 ~L~~L~l~~n~-l~~~~~~~~--~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~  267 (330)
T 1xku_A          193 SLTELHLDGNK-ITKVDAASL--KGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQV  267 (330)
T ss_dssp             TCSEEECTTSC-CCEECTGGG--TTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCE
T ss_pred             cCCEEECCCCc-CCccCHHHh--cCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCE
Confidence            45555555442 3334 3444  67777888888777 455554 35777788888888776 46678888888888888


Q ss_pred             EeecCCc
Q 045942           90 LAIAECP   96 (131)
Q Consensus        90 L~i~~~~   96 (131)
                      |++.++.
T Consensus       268 L~l~~N~  274 (330)
T 1xku_A          268 VYLHNNN  274 (330)
T ss_dssp             EECCSSC
T ss_pred             EECCCCc
Confidence            8887765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.66  E-value=1.4e-07  Score=66.58  Aligned_cols=75  Identities=20%  Similarity=0.274  Sum_probs=31.8

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLA   91 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~   91 (131)
                      +|++|+++++ .+..++. +  ..+++|+.|+++++ .+..+|... . ++|+.|++++| .+..++ .+..+++|+.|+
T Consensus        64 ~L~~L~L~~N-~i~~~~~-l--~~l~~L~~L~L~~N-~l~~l~~~~-~-~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~  134 (263)
T 1xeu_A           64 NLKELHLSHN-QISDLSP-L--KDLTKLEELSVNRN-RLKNLNGIP-S-ACLSRLFLDNN-ELRDTD-SLIHLKNLEILS  134 (263)
T ss_dssp             TCCEEECCSS-CCCCCGG-G--TTCSSCCEEECCSS-CCSCCTTCC-C-SSCCEEECCSS-CCSBSG-GGTTCTTCCEEE
T ss_pred             CCCEEECCCC-ccCCChh-h--ccCCCCCEEECCCC-ccCCcCccc-c-CcccEEEccCC-ccCCCh-hhcCcccccEEE
Confidence            4555555443 3444443 3  44555555555544 344343211 1 44444444433 233332 233444455554


Q ss_pred             ecCC
Q 045942           92 IAEC   95 (131)
Q Consensus        92 i~~~   95 (131)
                      +.++
T Consensus       135 Ls~N  138 (263)
T 1xeu_A          135 IRNN  138 (263)
T ss_dssp             CTTS
T ss_pred             CCCC
Confidence            4443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.66  E-value=1.2e-07  Score=66.85  Aligned_cols=80  Identities=20%  Similarity=0.189  Sum_probs=65.8

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT   86 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~   86 (131)
                      +..+ +|++|+++++ .+..+| ++  ..+++|+.|++++| .+..+|. +..+++|+.|++++| .+..+|....  ++
T Consensus        37 ~~~l~~L~~L~l~~n-~i~~l~-~l--~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~--~~  107 (263)
T 1xeu_A           37 QKELSGVQNFNGDNS-NIQSLA-GM--QFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS--AC  107 (263)
T ss_dssp             HHHHTTCSEEECTTS-CCCCCT-TG--GGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC--SS
T ss_pred             hhhcCcCcEEECcCC-Ccccch-HH--hhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCC-ccCCcCcccc--Cc
Confidence            3345 8999999987 577887 56  78999999999998 6888876 889999999999986 5777776444  79


Q ss_pred             cCeEeecCCc
Q 045942           87 LKSLAIAECP   96 (131)
Q Consensus        87 L~~L~i~~~~   96 (131)
                      |++|++.+|.
T Consensus       108 L~~L~L~~N~  117 (263)
T 1xeu_A          108 LSRLFLDNNE  117 (263)
T ss_dssp             CCEEECCSSC
T ss_pred             ccEEEccCCc
Confidence            9999998874

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.66  E-value=2.9e-08  Score=71.53  Aligned_cols=110  Identities=11%  Similarity=0.066  Sum_probs=67.2

Q ss_pred             CCCCC-ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCC
Q 045942            7 KNTRP-HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHV   84 (131)
Q Consensus         7 ~i~~l-~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l   84 (131)
                      .+..+ +|++|+++++ .+..++ ..+. ..+++|+.|++++| .+..+|. ...+++|++|++++| .+..+|..+..+
T Consensus       139 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~-~~~l~~L~~L~Ls~N-~l~~l~~~~~~l  213 (317)
T 3o53_A          139 DEGCRSRVQYLDLKLN-EIDTVNFAELA-ASSDTLEHLNLQYN-FIYDVKG-QVVFAKLKTLDLSSN-KLAFMGPEFQSA  213 (317)
T ss_dssp             CTGGGSSEEEEECTTS-CCCEEEGGGGG-GGTTTCCEEECTTS-CCCEEEC-CCCCTTCCEEECCSS-CCCEECGGGGGG
T ss_pred             hhhccCCCCEEECCCC-CCCcccHHHHh-hccCcCCEEECCCC-cCccccc-ccccccCCEEECCCC-cCCcchhhhccc
Confidence            34445 6777777665 344443 3221 35677777777776 4555543 334777777777765 466676667777


Q ss_pred             CCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           85 TTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        85 ~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                      ++|+.|++.++.- .. .    ...+..+.+++.+.+.++.+.
T Consensus       214 ~~L~~L~L~~N~l-~~-l----~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          214 AGVTWISLRNNKL-VL-I----EKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             TTCSEEECTTSCC-CE-E----CTTCCCCTTCCEEECTTCCCB
T ss_pred             CcccEEECcCCcc-cc-h----hhHhhcCCCCCEEEccCCCcc
Confidence            7788888777642 11 1    223455677788888777664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.66  E-value=9.9e-08  Score=68.48  Aligned_cols=83  Identities=16%  Similarity=0.167  Sum_probs=40.9

Q ss_pred             CCCcCEEeecCCCCcccC-CCCCCCc---ccccccccccccccCcCCCCCCCCCCcCeEeecCCchhhhhcCCCCCCCCC
Q 045942           36 TDTLQSLIIVDCPNFMAL-PGSLKDL---EALETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWP  111 (131)
Q Consensus        36 l~~L~~L~l~~~~~l~~l-p~~l~~l---~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~~~~l~~~~~~~~~~~~~  111 (131)
                      +++|+.|+++++ .+..+ |..++.+   ++|++|++++| .++.+|..+.  ++|++|+++++.--.       -....
T Consensus       223 l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N~l~~-------~~~~~  291 (310)
T 4glp_A          223 GVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLSSNRLNR-------APQPD  291 (310)
T ss_dssp             TCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECCSCCCCS-------CCCTT
T ss_pred             CCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECCCCcCCC-------Cchhh
Confidence            344555555544 23322 4334333   35555555543 3445555443  455555555543110       01134


Q ss_pred             cccCCCeeEecCcccCCC
Q 045942          112 KIAHIPEILLDDKMIKSS  129 (131)
Q Consensus       112 ~i~~l~~l~~~~~~~~~~  129 (131)
                      .+++++.+.+.+|.+...
T Consensus       292 ~l~~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          292 ELPEVDNLTLDGNPFLVP  309 (310)
T ss_dssp             SCCCCSCEECSSTTTSCC
T ss_pred             hCCCccEEECcCCCCCCC
Confidence            456777788888877654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.64  E-value=2.3e-08  Score=71.96  Aligned_cols=83  Identities=19%  Similarity=0.285  Sum_probs=36.7

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCc-----ccccccccccccccCcCC-CCCCCCC
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDL-----EALETLVIARCPKLSSLP-EDMHHVT   85 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l-----~sL~~L~l~~c~~l~~lp-~~~~~l~   85 (131)
                      +|++|+++++.-...+|..++...+++|+.|+++++ .+..+|..++.+     ++|++|++++|. +..++ ..+..++
T Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~  173 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFP  173 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCS
T ss_pred             CccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCC
Confidence            455555555432223443210024455555555554 333334333333     455555555443 23332 3444555


Q ss_pred             CcCeEeecCCc
Q 045942           86 TLKSLAIAECP   96 (131)
Q Consensus        86 ~L~~L~i~~~~   96 (131)
                      +|++|++.++.
T Consensus       174 ~L~~L~Ls~N~  184 (312)
T 1wwl_A          174 ALSTLDLSDNP  184 (312)
T ss_dssp             SCCEEECCSCT
T ss_pred             CCCEEECCCCC
Confidence            55555555443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.64  E-value=8.5e-08  Score=68.53  Aligned_cols=80  Identities=20%  Similarity=0.290  Sum_probs=39.0

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT   86 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~   86 (131)
                      +..+ +|++|+++++ .+..+|. +  ..+++|+.|++++| .+..++ .+..+++|+.|++++| .+..+ ..+..+++
T Consensus        86 l~~l~~L~~L~l~~n-~l~~~~~-l--~~l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~  157 (291)
T 1h6t_A           86 LANLKNLGWLFLDEN-KVKDLSS-L--KDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRLTK  157 (291)
T ss_dssp             GTTCTTCCEEECCSS-CCCCGGG-G--TTCTTCCEEECTTS-CCCCCG-GGGGCTTCCEEECCSS-CCCCC-GGGGGCTT
T ss_pred             cccCCCCCEEECCCC-cCCCChh-h--ccCCCCCEEECCCC-cCCCCh-hhcCCCCCCEEEccCC-cCCcc-hhhccCCC
Confidence            4455 6666666654 3444443 3  45566666666655 344442 3444555555555443 23333 23334444


Q ss_pred             cCeEeecCC
Q 045942           87 LKSLAIAEC   95 (131)
Q Consensus        87 L~~L~i~~~   95 (131)
                      |++|++.+|
T Consensus       158 L~~L~L~~N  166 (291)
T 1h6t_A          158 LDTLSLEDN  166 (291)
T ss_dssp             CSEEECCSS
T ss_pred             CCEEEccCC
Confidence            444444433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.59  E-value=3.9e-07  Score=71.53  Aligned_cols=120  Identities=14%  Similarity=0.137  Sum_probs=63.1

Q ss_pred             CCCCCCC-ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCC--------------------------cccCCCC
Q 045942            5 DRKNTRP-HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPN--------------------------FMALPGS   56 (131)
Q Consensus         5 ~~~i~~l-~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~--------------------------l~~lp~~   56 (131)
                      +..+..+ +|++|+++++.-...+| ..+  ..+++|+.|++++|..                          +..+|..
T Consensus       398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~  475 (680)
T 1ziw_A          398 SDAFSWLGHLEVLDLGLNEIGQELTGQEW--RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP  475 (680)
T ss_dssp             TTTTTTCTTCCEEECCSSCCEEECCSGGG--TTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCT
T ss_pred             hhhhhCCCCCCEEeCCCCcCccccCcccc--cCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcc
Confidence            3445556 77777777654333454 233  5556666666665531                          1233444


Q ss_pred             CCCcccccccccccccccCcCCCC-CCCCCCcCeEeecCCchhhhhc-CCCCC--CCCCcccCCCeeEecCcccC
Q 045942           57 LKDLEALETLVIARCPKLSSLPED-MHHVTTLKSLAIAECPALSERC-KPPTG--EDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        57 l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~L~i~~~~~l~~~~-~~~~~--~~~~~i~~l~~l~~~~~~~~  127 (131)
                      ++.+++|+.|++++| .+..+|.. +..+++|++|++.++.--.-.. ..+.+  ..+..+.+++.+.+.++.+.
T Consensus       476 ~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~  549 (680)
T 1ziw_A          476 FQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD  549 (680)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC
T ss_pred             cccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC
Confidence            555666666666654 34444433 5566666777666654211000 00001  12355667777777777655

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.59  E-value=7.2e-08  Score=69.49  Aligned_cols=82  Identities=7%  Similarity=0.094  Sum_probs=70.4

Q ss_pred             CC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcC
Q 045942           10 RP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLK   88 (131)
Q Consensus        10 ~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~   88 (131)
                      .+ +|++|+++++ .+..++...   .+++|+.|++++| .+..+|..+..+++|+.|++++| .+..+|..+..+++|+
T Consensus       167 ~l~~L~~L~L~~N-~l~~~~~~~---~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~  240 (317)
T 3o53_A          167 SSDTLEHLNLQYN-FIYDVKGQV---VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLE  240 (317)
T ss_dssp             GTTTCCEEECTTS-CCCEEECCC---CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCC
T ss_pred             ccCcCCEEECCCC-cCccccccc---ccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCC
Confidence            45 8999999987 577776543   6899999999998 78888888999999999999986 5778999999999999


Q ss_pred             eEeecCCch
Q 045942           89 SLAIAECPA   97 (131)
Q Consensus        89 ~L~i~~~~~   97 (131)
                      .|++.+++-
T Consensus       241 ~L~l~~N~~  249 (317)
T 3o53_A          241 HFDLRGNGF  249 (317)
T ss_dssp             EEECTTCCC
T ss_pred             EEEccCCCc
Confidence            999998763

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.57  E-value=5e-07  Score=68.50  Aligned_cols=75  Identities=20%  Similarity=0.170  Sum_probs=35.7

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT   86 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~   86 (131)
                      +..+ +|++|+++++ .+..+|  +  +.+++|+.|++++| .+..+|  ++.+++|++|++++| .+..+|  +..+++
T Consensus        60 l~~l~~L~~L~Ls~n-~l~~~~--~--~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L~L~~N-~l~~l~--~~~l~~  128 (457)
T 3bz5_A           60 IEKLTGLTKLICTSN-NITTLD--L--SQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTN-KLTKLD--VSQNPL  128 (457)
T ss_dssp             GGGCTTCSEEECCSS-CCSCCC--C--TTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEECCSS-CCSCCC--CTTCTT
T ss_pred             hcccCCCCEEEccCC-cCCeEc--c--ccCCCCCEEECcCC-CCceee--cCCCCcCCEEECCCC-cCCeec--CCCCCc
Confidence            4444 5666666554 344443  3  45555555555555 344443  444555555555443 233332  333444


Q ss_pred             cCeEeec
Q 045942           87 LKSLAIA   93 (131)
Q Consensus        87 L~~L~i~   93 (131)
                      |++|++.
T Consensus       129 L~~L~l~  135 (457)
T 3bz5_A          129 LTYLNCA  135 (457)
T ss_dssp             CCEEECT
T ss_pred             CCEEECC
Confidence            4444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.57  E-value=2.6e-07  Score=67.11  Aligned_cols=104  Identities=16%  Similarity=0.206  Sum_probs=76.4

Q ss_pred             ceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCC-CCCCCcccccccccccccccCcCCC-CCCCCCCcCeEe
Q 045942           14 RRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALP-GSLKDLEALETLVIARCPKLSSLPE-DMHHVTTLKSLA   91 (131)
Q Consensus        14 ~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l~~lp~-~~~~l~~L~~L~   91 (131)
                      ..++.++...+..+|. +  ..+++|+.|+++++..+..+| ..++.+++|+.|+++++ .+..+++ .+.++++|+.|+
T Consensus        11 ~~v~~~~~n~l~~ip~-l--~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~   86 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-L--PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLN   86 (347)
T ss_dssp             SCEECCSSCCCTTTTT-S--CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEE
T ss_pred             CEEEcCCCCCCCccCC-C--CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEe
Confidence            4556666436889999 7  899999999999744788887 46889999999999986 5777765 468899999999


Q ss_pred             ecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           92 IAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        92 i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                      +.++.- ..    .....+..+. ++.+.+.++.+.
T Consensus        87 l~~N~l-~~----~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           87 LSFNAL-ES----LSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCSSCC-SC----CCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCCCcc-ce----eCHHHcccCC-ceEEEeeCCCcc
Confidence            998752 11    1111222233 778888777654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.56  E-value=1.9e-07  Score=73.32  Aligned_cols=81  Identities=20%  Similarity=0.305  Sum_probs=50.4

Q ss_pred             CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCC
Q 045942            7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVT   85 (131)
Q Consensus         7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~   85 (131)
                      .+..+ +|+.|++++| .+..++. +  ..+++|+.|++++| .+..+| .+..+++|+.|++++|. +..++ .+..++
T Consensus        60 ~l~~l~~L~~L~Ls~N-~l~~~~~-l--~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~  131 (605)
T 1m9s_A           60 GIQYLPNVTKLFLNGN-KLTDIKP-L--TNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNG-ISDIN-GLVHLP  131 (605)
T ss_dssp             TGGGCTTCCEEECTTS-CCCCCGG-G--GGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSC-CCCCG-GGGGCT
T ss_pred             HHccCCCCCEEEeeCC-CCCCChh-h--ccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCC-CCCCc-cccCCC
Confidence            35556 7777777765 4555655 4  56777777777776 555554 46667777777776653 44442 345556


Q ss_pred             CcCeEeecCC
Q 045942           86 TLKSLAIAEC   95 (131)
Q Consensus        86 ~L~~L~i~~~   95 (131)
                      +|+.|++.+|
T Consensus       132 ~L~~L~Ls~N  141 (605)
T 1m9s_A          132 QLESLYLGNN  141 (605)
T ss_dssp             TCSEEECCSS
T ss_pred             ccCEEECCCC
Confidence            6666666554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.54  E-value=2.8e-07  Score=72.32  Aligned_cols=105  Identities=14%  Similarity=0.159  Sum_probs=52.7

Q ss_pred             CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCC
Q 045942            7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVT   85 (131)
Q Consensus         7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~   85 (131)
                      .+..+ +|++|++++| .+..++ .+  ..+++|+.|++++| .+..+ ..+..+++|+.|++++|. +..+++ +..++
T Consensus       104 ~l~~l~~L~~L~Ls~N-~l~~l~-~l--~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~  175 (605)
T 1m9s_A          104 SLKDLKKLKSLSLEHN-GISDIN-GL--VHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLT  175 (605)
T ss_dssp             TSTTCTTCCEEECTTS-CCCCCG-GG--GGCTTCSEEECCSS-CCCCC-GGGGSCTTCSEEECCSSC-CCCCGG-GTTCT
T ss_pred             hhccCCCCCEEEecCC-CCCCCc-cc--cCCCccCEEECCCC-ccCCc-hhhcccCCCCEEECcCCc-CCCchh-hccCC
Confidence            34444 5555555554 233443 23  45556666666655 34444 345556666666666543 444433 55566


Q ss_pred             CcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCccc
Q 045942           86 TLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMI  126 (131)
Q Consensus        86 ~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~  126 (131)
                      +|+.|++.+|..-.       -.....+.++..|.+.++.+
T Consensus       176 ~L~~L~Ls~N~i~~-------l~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          176 KLQNLYLSKNHISD-------LRALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             TCCEEECCSSCCCB-------CGGGTTCTTCSEEECCSEEE
T ss_pred             CCCEEECcCCCCCC-------ChHHccCCCCCEEEccCCcC
Confidence            66666666553110       01233445555555555543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.53  E-value=1e-07  Score=72.82  Aligned_cols=111  Identities=11%  Similarity=0.030  Sum_probs=62.3

Q ss_pred             CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCC
Q 045942            7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVT   85 (131)
Q Consensus         7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~   85 (131)
                      .++.+ +|++|+++++.-....|..+. ..+++|+.|++++| .+..+|. ...+++|+.|++++| .+..+|..+..++
T Consensus       139 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~l~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~  214 (487)
T 3oja_A          139 DEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYN-FIYDVKG-QVVFAKLKTLDLSSN-KLAFMGPEFQSAA  214 (487)
T ss_dssp             CGGGGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTS-CCCEEEC-CCCCTTCCEEECCSS-CCCEECGGGGGGT
T ss_pred             hhcCCCCCCEEECCCCCCCCcChHHHh-hhCCcccEEecCCC-ccccccc-cccCCCCCEEECCCC-CCCCCCHhHcCCC
Confidence            34445 666666666532222333331 25666777777666 4555543 334667777777664 4556666666667


Q ss_pred             CcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           86 TLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        86 ~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                      +|+.|++.++.--.      .+..+..+.++..+.+.++.+.
T Consensus       215 ~L~~L~Ls~N~l~~------lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          215 GVTWISLRNNKLVL------IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             TCSEEECTTSCCCE------ECTTCCCCTTCCEEECTTCCBC
T ss_pred             CccEEEecCCcCcc------cchhhccCCCCCEEEcCCCCCc
Confidence            77777777654211      1122445566777777776654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.51  E-value=2.6e-08  Score=71.80  Aligned_cols=39  Identities=15%  Similarity=0.287  Sum_probs=19.6

Q ss_pred             CCcccccccccccccccC-cCCCCCCCCCCcCeEeecCCc
Q 045942           58 KDLEALETLVIARCPKLS-SLPEDMHHVTTLKSLAIAECP   96 (131)
Q Consensus        58 ~~l~sL~~L~l~~c~~l~-~lp~~~~~l~~L~~L~i~~~~   96 (131)
                      ..+++|++|++.+|..+. ..+..+..+++|++|++.+|.
T Consensus       219 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          219 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            344555555555554222 233344455566666666654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.50  E-value=1.3e-06  Score=66.22  Aligned_cols=77  Identities=18%  Similarity=0.131  Sum_probs=41.3

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT   86 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~   86 (131)
                      ++.+ +|++|+++++ .+..++  +  +.+++|+.|+++++ .+..+|  ++.+++|++|++.+|. +..++  +..+++
T Consensus        81 ~~~l~~L~~L~Ls~N-~l~~~~--~--~~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~  149 (457)
T 3bz5_A           81 LSQNTNLTYLACDSN-KLTNLD--V--TPLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQ  149 (457)
T ss_dssp             CTTCTTCSEEECCSS-CCSCCC--C--TTCTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTT
T ss_pred             cccCCCCCEEECcCC-CCceee--c--CCCCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCCc-cceec--cccCCc
Confidence            4555 6777777665 355554  4  55666666666666 444443  5555566666655542 33332  334444


Q ss_pred             cCeEeecCC
Q 045942           87 LKSLAIAEC   95 (131)
Q Consensus        87 L~~L~i~~~   95 (131)
                      |++|++.+|
T Consensus       150 L~~L~l~~n  158 (457)
T 3bz5_A          150 LTELDCHLN  158 (457)
T ss_dssp             CCEEECTTC
T ss_pred             CCEEECCCC
Confidence            455444444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.49  E-value=1.2e-07  Score=72.41  Aligned_cols=86  Identities=7%  Similarity=0.076  Sum_probs=72.2

Q ss_pred             CCCC-CC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCC
Q 045942            6 RKNT-RP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHH   83 (131)
Q Consensus         6 ~~i~-~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~   83 (131)
                      ..+. .+ +|++|++++| .+..+|..   ..+++|+.|++++| .+..+|..+..+++|+.|++++| .+..+|..+..
T Consensus       162 ~~l~~~l~~L~~L~Ls~N-~l~~~~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~  235 (487)
T 3oja_A          162 AELAASSDTLEHLNLQYN-FIYDVKGQ---VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRF  235 (487)
T ss_dssp             GGGGGGTTTCCEEECTTS-CCCEEECC---CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCC
T ss_pred             HHHhhhCCcccEEecCCC-cccccccc---ccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC-cCcccchhhcc
Confidence            3444 56 9999999987 47777654   46899999999999 78888888999999999999986 57789999999


Q ss_pred             CCCcCeEeecCCch
Q 045942           84 VTTLKSLAIAECPA   97 (131)
Q Consensus        84 l~~L~~L~i~~~~~   97 (131)
                      +++|+.|++.+++-
T Consensus       236 l~~L~~L~l~~N~l  249 (487)
T 3oja_A          236 SQNLEHFDLRGNGF  249 (487)
T ss_dssp             CTTCCEEECTTCCB
T ss_pred             CCCCCEEEcCCCCC
Confidence            99999999998764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.48  E-value=2.8e-07  Score=67.33  Aligned_cols=83  Identities=11%  Similarity=0.134  Sum_probs=60.9

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCC-CCCCCCCcCe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPE-DMHHVTTLKS   89 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~-~~~~l~~L~~   89 (131)
                      ++++|+++++ +++.+|.+.| ..+++|+.|+++++..++.+|. .+.+++++.++.+.++.++..+++ .+..+++|++
T Consensus        31 ~l~~L~Ls~N-~i~~i~~~~f-~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           31 NAIELRFVLT-KLRVIQKGAF-SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  108 (350)
T ss_dssp             TCSEEEEESC-CCSEECTTSS-TTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred             CCCEEEccCC-cCCCcCHHHH-cCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence            7899999875 6888886543 7889999999998865566764 356677777666666667777754 4677788888


Q ss_pred             EeecCCc
Q 045942           90 LAIAECP   96 (131)
Q Consensus        90 L~i~~~~   96 (131)
                      |++.++.
T Consensus       109 L~l~~n~  115 (350)
T 4ay9_X          109 LLISNTG  115 (350)
T ss_dssp             EEEEEEC
T ss_pred             ccccccc
Confidence            8876553

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.47  E-value=4.1e-07  Score=66.43  Aligned_cols=78  Identities=21%  Similarity=0.272  Sum_probs=53.7

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLA   91 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~   91 (131)
                      +|++|.+.++..++.+|...| ..+++|+.|+++++ .+..+|..  .+.+|+.|.+.++..++.+|. +..+++|+.++
T Consensus       178 ~L~~l~l~~~n~l~~i~~~~f-~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~  252 (350)
T 4ay9_X          178 QLDELNLSDNNNLEELPNDVF-HGASGPVILDISRT-RIHSLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEAS  252 (350)
T ss_dssp             EEEEEECTTCTTCCCCCTTTT-TTEECCSEEECTTS-CCCCCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEE
T ss_pred             chhHHhhccCCcccCCCHHHh-ccCcccchhhcCCC-CcCccChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCc
Confidence            677777776667777775543 67778888888877 67777753  245555566666677777774 66777888887


Q ss_pred             ecC
Q 045942           92 IAE   94 (131)
Q Consensus        92 i~~   94 (131)
                      +.+
T Consensus       253 l~~  255 (350)
T 4ay9_X          253 LTY  255 (350)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            753

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.44  E-value=6.2e-07  Score=67.69  Aligned_cols=57  Identities=16%  Similarity=0.215  Sum_probs=23.4

Q ss_pred             CCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEeecCC
Q 045942           35 CTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAIAEC   95 (131)
Q Consensus        35 ~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~~   95 (131)
                      .+++|+.|++++| .+..++. ++.+++|+.|++++|. +..++. +..+++|+.|++.+|
T Consensus       285 ~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          285 GLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNN  341 (466)
T ss_dssp             TCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECCSS
T ss_pred             CCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCCc-CCCchh-hccCccCCEeECCCC
Confidence            4444444444444 2333322 3444444444444442 222222 333444444444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.44  E-value=1.6e-07  Score=67.49  Aligned_cols=89  Identities=19%  Similarity=0.285  Sum_probs=65.3

Q ss_pred             CCCCC--CCC-ccceEeecCcCCCcccchhhhccCC-----CCcCEEeecCCCCcccCC-CCCCCccccccccccccccc
Q 045942            4 HDRKN--TRP-HLRRVVIGEITQFLELPQWLLQCCT-----DTLQSLIIVDCPNFMALP-GSLKDLEALETLVIARCPKL   74 (131)
Q Consensus         4 ~~~~i--~~l-~L~~L~i~~c~~l~~lp~~~~~~~l-----~~L~~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l   74 (131)
                      .|..+  ..+ +|++|+++++. +..+|..+  +.+     ++|++|+++++ .+..++ ..++.+++|++|++++|...
T Consensus       111 ~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~--~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~  186 (312)
T 1wwl_A          111 APPPLLEATGPDLNILNLRNVS-WATRDAWL--AELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPEL  186 (312)
T ss_dssp             CCCCSSSCCSCCCSEEEEESCB-CSSSSSHH--HHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred             hHHHHHHhcCCCccEEEccCCC-CcchhHHH--HHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcC
Confidence            45554  677 99999999864 66667655  454     89999999998 566665 67889999999999987644


Q ss_pred             Cc--CCCCC--CCCCCcCeEeecCCc
Q 045942           75 SS--LPEDM--HHVTTLKSLAIAECP   96 (131)
Q Consensus        75 ~~--lp~~~--~~l~~L~~L~i~~~~   96 (131)
                      +.  +|..+  ..+++|++|++.+|.
T Consensus       187 ~~~~~~~~~~~~~l~~L~~L~L~~N~  212 (312)
T 1wwl_A          187 GERGLISALCPLKFPTLQVLALRNAG  212 (312)
T ss_dssp             HHHHHHHHSCTTSCTTCCEEECTTSC
T ss_pred             cchHHHHHHHhccCCCCCEEECCCCc
Confidence            32  23333  667788888888764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.43  E-value=2.4e-08  Score=71.96  Aligned_cols=63  Identities=16%  Similarity=0.173  Sum_probs=30.7

Q ss_pred             CCCC-ccceEeecCcCCCcc-cchhhhccCCCCcCEEeecCCCCcccCCCCCCCccccccccccccc
Q 045942            8 NTRP-HLRRVVIGEITQFLE-LPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCP   72 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~-lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~   72 (131)
                      +..+ +|++|++++|.-... +|..+  ..+++|+.|++++|.--...|..+..+++|++|++.+|.
T Consensus        89 ~~~~~~L~~L~L~~~~l~~~~~~~~~--~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~  153 (336)
T 2ast_B           89 HFSPFRVQHMDLSNSVIEVSTLHGIL--SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS  153 (336)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHH--TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB
T ss_pred             hccCCCCCEEEccCCCcCHHHHHHHH--hhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCC
Confidence            3444 666666666542111 44444  555566666665553111233334445555555555543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.40  E-value=1.9e-10  Score=77.91  Aligned_cols=59  Identities=12%  Similarity=0.054  Sum_probs=30.0

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccc
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARC   71 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c   71 (131)
                      +..+ +|++|+++++ .+..+| .+  ..+++|+.|++++| .+..+|..+..+++|+.|++++|
T Consensus        44 ~~~l~~L~~L~ls~n-~l~~l~-~~--~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N  103 (198)
T 1ds9_A           44 LSTLKACKHLALSTN-NIEKIS-SL--SGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             HHHTTTCSEEECSEE-EESCCC-CH--HHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE
T ss_pred             HhcCCCCCEEECCCC-CCcccc-cc--ccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC
Confidence            3344 5666666554 344455 34  45555666666555 44455544444455555555443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.38  E-value=9.5e-08  Score=64.09  Aligned_cols=88  Identities=13%  Similarity=0.267  Sum_probs=63.7

Q ss_pred             CCCccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccCC-CCCCCc----ccccccccccccccCcCC-CCC
Q 045942            9 TRPHLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMALP-GSLKDL----EALETLVIARCPKLSSLP-EDM   81 (131)
Q Consensus         9 ~~l~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~lp-~~l~~l----~sL~~L~l~~c~~l~~lp-~~~   81 (131)
                      +.+.|+.|++++|. +...- ..+  ..+++|+.|++++|..+..-- ..+..+    ++|++|++++|+.++.-. ..+
T Consensus        59 ~~~~L~~LDLs~~~-Itd~GL~~L--~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L  135 (176)
T 3e4g_A           59 DKYKIQAIDATDSC-IMSIGFDHM--EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL  135 (176)
T ss_dssp             TCCCEEEEEEESCC-CCGGGGGGG--TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred             CCceEeEEeCcCCC-ccHHHHHHh--cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH
Confidence            44489999999996 54322 334  678999999999997665321 123333    479999999999776421 124


Q ss_pred             CCCCCcCeEeecCCchhh
Q 045942           82 HHVTTLKSLAIAECPALS   99 (131)
Q Consensus        82 ~~l~~L~~L~i~~~~~l~   99 (131)
                      .++++|++|++++|+.+.
T Consensus       136 ~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          136 HHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             GGCTTCCEEEEESCTTCC
T ss_pred             hcCCCCCEEECCCCCCCC
Confidence            567899999999999776

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.38  E-value=5e-07  Score=68.20  Aligned_cols=80  Identities=14%  Similarity=0.261  Sum_probs=50.6

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT   86 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~   86 (131)
                      +..+ +|++|++++| .+..+|. +  ..+++|+.|++++| .+..++. ++.+++|++|++++| .+..++. +..+++
T Consensus        64 ~~~l~~L~~L~Ls~n-~l~~~~~-~--~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~  135 (466)
T 1o6v_A           64 VEYLNNLTQINFSNN-QLTDITP-L--KNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNN-QITDIDP-LKNLTN  135 (466)
T ss_dssp             GGGCTTCCEEECCSS-CCCCCGG-G--TTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTT
T ss_pred             hhhhcCCCEEECCCC-ccCCchh-h--hccccCCEEECCCC-ccccChh-hcCCCCCCEEECCCC-CCCCChH-HcCCCC
Confidence            4445 7777777765 3556655 4  66777777777776 4555554 666777777777665 3555544 556666


Q ss_pred             cCeEeecCC
Q 045942           87 LKSLAIAEC   95 (131)
Q Consensus        87 L~~L~i~~~   95 (131)
                      |++|++.+|
T Consensus       136 L~~L~l~~n  144 (466)
T 1o6v_A          136 LNRLELSSN  144 (466)
T ss_dssp             CSEEEEEEE
T ss_pred             CCEEECCCC
Confidence            666666554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.35  E-value=4.4e-06  Score=63.23  Aligned_cols=74  Identities=19%  Similarity=0.265  Sum_probs=36.3

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLA   91 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~   91 (131)
                      +|++|+++++ .+..+| .+  +.+++|+.|+++++ .+..+|..+   ++|++|++.+| .+..+| .+..+++|++|+
T Consensus       132 ~L~~L~L~~n-~l~~lp-~~--~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~  201 (454)
T 1jl5_A          132 LLEYLGVSNN-QLEKLP-EL--QNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGNN-QLEELP-ELQNLPFLTAIY  201 (454)
T ss_dssp             TCCEEECCSS-CCSSCC-CC--TTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTTCCEEE
T ss_pred             CCCEEECcCC-CCCCCc-cc--CCCCCCCEEECCCC-cCcccCCCc---ccccEEECcCC-cCCcCc-cccCCCCCCEEE
Confidence            5666666554 344555 34  55666666666655 344444322   34455555443 233344 344444444444


Q ss_pred             ecCC
Q 045942           92 IAEC   95 (131)
Q Consensus        92 i~~~   95 (131)
                      +.+|
T Consensus       202 l~~N  205 (454)
T 1jl5_A          202 ADNN  205 (454)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            4433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.31  E-value=1.5e-06  Score=62.22  Aligned_cols=77  Identities=14%  Similarity=0.196  Sum_probs=59.8

Q ss_pred             ccceEeecCcCCCccc-chhhhccCC---CCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCc
Q 045942           12 HLRRVVIGEITQFLEL-PQWLLQCCT---DTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTL   87 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~l-p~~~~~~~l---~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L   87 (131)
                      +|++|+++++. +..+ |..+  ..+   ++|+.|++++| .+..+|..+.  ++|+.|++++| .+..+|. +..+++|
T Consensus       225 ~L~~L~Ls~N~-l~~~~p~~~--~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~-~~~l~~L  296 (310)
T 4glp_A          225 QPHSLDLSHNS-LRATVNPSA--PRCMWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLSSN-RLNRAPQ-PDELPEV  296 (310)
T ss_dssp             CCSSEECTTSC-CCCCCCSCC--SSCCCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECCSC-CCCSCCC-TTSCCCC
T ss_pred             CCCEEECCCCC-CCccchhhH--HhccCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECCCC-cCCCCch-hhhCCCc
Confidence            67777777764 4444 6554  444   79999999998 7889998775  89999999886 5777765 6778999


Q ss_pred             CeEeecCCc
Q 045942           88 KSLAIAECP   96 (131)
Q Consensus        88 ~~L~i~~~~   96 (131)
                      +.|++.+++
T Consensus       297 ~~L~L~~N~  305 (310)
T 4glp_A          297 DNLTLDGNP  305 (310)
T ss_dssp             SCEECSSTT
T ss_pred             cEEECcCCC
Confidence            999998876

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.19  E-value=1.2e-08  Score=68.91  Aligned_cols=85  Identities=21%  Similarity=0.298  Sum_probs=69.3

Q ss_pred             CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCC--CCCC
Q 045942            7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPE--DMHH   83 (131)
Q Consensus         7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~--~~~~   83 (131)
                      .+..+ +|++|+++++ .+..+|..+  ..+++|+.|++++| .+..+| .+..+++|+.|++++| .+..++.  .+..
T Consensus        65 ~~~~l~~L~~L~l~~n-~l~~l~~~~--~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~  138 (198)
T 1ds9_A           65 SLSGMENLRILSLGRN-LIKKIENLD--AVADTLEELWISYN-QIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAA  138 (198)
T ss_dssp             CHHHHTTCCEEEEEEE-EECSCSSHH--HHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTT
T ss_pred             ccccCCCCCEEECCCC-Ccccccchh--hcCCcCCEEECcCC-cCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhc
Confidence            44555 8999999987 577888766  67789999999998 677787 6888999999999986 4666554  5778


Q ss_pred             CCCcCeEeecCCch
Q 045942           84 VTTLKSLAIAECPA   97 (131)
Q Consensus        84 l~~L~~L~i~~~~~   97 (131)
                      +++|++|++.+++-
T Consensus       139 l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          139 LDKLEDLLLAGNPL  152 (198)
T ss_dssp             TTTCSEEEECSCHH
T ss_pred             CCCCCEEEecCCcc
Confidence            89999999999874

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.12  E-value=1.5e-05  Score=62.85  Aligned_cols=77  Identities=22%  Similarity=0.303  Sum_probs=40.3

Q ss_pred             CCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEeecCCchhhhhcCCCCCCCCCcccCC
Q 045942           37 DTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHI  116 (131)
Q Consensus        37 ~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l  116 (131)
                      ++|+.|++++| .+..+|   ..+++|+.|++++| .+..+|.   .+++|+.|++.+|. +.     .....+..+.++
T Consensus       221 ~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~-L~-----~lp~~l~~l~~L  286 (622)
T 3g06_A          221 SGLKELIVSGN-RLTSLP---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQ-LT-----RLPESLIHLSSE  286 (622)
T ss_dssp             TTCCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CC-----SCCGGGGGSCTT
T ss_pred             CCCCEEEccCC-ccCcCC---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCC-CC-----cCCHHHhhcccc
Confidence            44555555555 444454   23455666666554 4555555   33466666666553 11     112234455666


Q ss_pred             CeeEecCcccC
Q 045942          117 PEILLDDKMIK  127 (131)
Q Consensus       117 ~~l~~~~~~~~  127 (131)
                      ..+.+.++.+.
T Consensus       287 ~~L~L~~N~l~  297 (622)
T 3g06_A          287 TTVNLEGNPLS  297 (622)
T ss_dssp             CEEECCSCCCC
T ss_pred             CEEEecCCCCC
Confidence            66777666654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.09  E-value=6.3e-06  Score=64.92  Aligned_cols=74  Identities=22%  Similarity=0.413  Sum_probs=61.4

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLA   91 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~   91 (131)
                      +|++|+++++ .+..+|.     .+++|+.|++++| .+..+|.   .+++|+.|++++| .+..+|..+..+++|+.|+
T Consensus       222 ~L~~L~Ls~N-~L~~lp~-----~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~  290 (622)
T 3g06_A          222 GLKELIVSGN-RLTSLPV-----LPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVN  290 (622)
T ss_dssp             TCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEE
T ss_pred             CCCEEEccCC-ccCcCCC-----CCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEE
Confidence            5777777765 4666662     4588999999998 7888987   5789999999987 5779999999999999999


Q ss_pred             ecCCc
Q 045942           92 IAECP   96 (131)
Q Consensus        92 i~~~~   96 (131)
                      +.+++
T Consensus       291 L~~N~  295 (622)
T 3g06_A          291 LEGNP  295 (622)
T ss_dssp             CCSCC
T ss_pred             ecCCC
Confidence            99987

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.08  E-value=1.1e-05  Score=60.98  Aligned_cols=76  Identities=18%  Similarity=0.277  Sum_probs=41.2

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT   86 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~   86 (131)
                      ++++ +|++|+++++ .+..+|...     ++|+.|++++| .+..+| .++.+++|++|++.+| .+..+|...   ++
T Consensus       149 ~~~l~~L~~L~l~~N-~l~~lp~~~-----~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~~---~~  216 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNN-SLKKLPDLP-----PSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNN-SLKKLPDLP---LS  216 (454)
T ss_dssp             CTTCTTCCEEECCSS-CCSCCCCCC-----TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS-CCSSCCCCC---TT
T ss_pred             cCCCCCCCEEECCCC-cCcccCCCc-----ccccEEECcCC-cCCcCc-cccCCCCCCEEECCCC-cCCcCCCCc---Cc
Confidence            5555 6666666654 344555322     35666666665 455555 3556666666666554 344444432   35


Q ss_pred             cCeEeecCC
Q 045942           87 LKSLAIAEC   95 (131)
Q Consensus        87 L~~L~i~~~   95 (131)
                      |++|++.+|
T Consensus       217 L~~L~l~~n  225 (454)
T 1jl5_A          217 LESIVAGNN  225 (454)
T ss_dssp             CCEEECCSS
T ss_pred             ccEEECcCC
Confidence            666666555

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.02  E-value=6.5e-06  Score=64.26  Aligned_cols=32  Identities=9%  Similarity=0.293  Sum_probs=15.2

Q ss_pred             cccccccccccCcCCCCCCCCCCcCeEeecCCc
Q 045942           64 ETLVIARCPKLSSLPEDMHHVTTLKSLAIAECP   96 (131)
Q Consensus        64 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~~~   96 (131)
                      +.|++++| .+..+|..+..+++|+.|++.+++
T Consensus       210 ~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          210 IFFRCREN-RITHIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             EEEECCSS-CCCCCCGGGGGSCTTEEEECCSSS
T ss_pred             eEEecCCC-cceecCHHHhcCCCCCEEEeeCCc
Confidence            44444443 344455444445555555555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.97  E-value=6.8e-05  Score=58.52  Aligned_cols=49  Identities=22%  Similarity=0.322  Sum_probs=22.8

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCccccccccccc
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIAR   70 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~   70 (131)
                      +|++|+++++ .+..+| .    .+++|+.|++++| .+..+|. +..  +|+.|++++
T Consensus        81 ~L~~L~Ls~N-~l~~ip-~----~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           81 QITVLEITQN-ALISLP-E----LPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSS-CCSCCC-C----CCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred             CCCEEECcCC-CCcccc-c----ccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence            5566666554 344555 1    2345555555554 3444443 322  444444444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.94  E-value=3e-07  Score=67.75  Aligned_cols=15  Identities=7%  Similarity=0.142  Sum_probs=8.4

Q ss_pred             ccCCCeeEecCcccC
Q 045942          113 IAHIPEILLDDKMIK  127 (131)
Q Consensus       113 i~~l~~l~~~~~~~~  127 (131)
                      +++++.+.+.++.+.
T Consensus       302 l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          302 MPDLLFLELNGNRFS  316 (386)
T ss_dssp             CTTCCEEECTTSBSC
T ss_pred             CCCceEEEccCCcCC
Confidence            345556666665554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.83  E-value=1.1e-06  Score=64.69  Aligned_cols=81  Identities=20%  Similarity=0.174  Sum_probs=38.7

Q ss_pred             ccceEeecCcCCC-----cccchhhhccCCCCcCEEeecCCCCccc-----CCCCC--CCcccccccccccccccC----
Q 045942           12 HLRRVVIGEITQF-----LELPQWLLQCCTDTLQSLIIVDCPNFMA-----LPGSL--KDLEALETLVIARCPKLS----   75 (131)
Q Consensus        12 ~L~~L~i~~c~~l-----~~lp~~~~~~~l~~L~~L~l~~~~~l~~-----lp~~l--~~l~sL~~L~l~~c~~l~----   75 (131)
                      +|++|++++|. +     ..+|..+  ..+++|+.|++++|. +..     ++..+  +.+++|++|++++|..-.    
T Consensus       217 ~L~~L~Ls~n~-l~~~g~~~l~~~l--~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~  292 (386)
T 2ca6_A          217 ELKVLDLQDNT-FTHLGSSALAIAL--KSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR  292 (386)
T ss_dssp             TCCEEECCSSC-CHHHHHHHHHHHG--GGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred             CccEEECcCCC-CCcHHHHHHHHHH--ccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH
Confidence            55555555543 3     3344444  455555555555552 322     23333  225556666665543221    


Q ss_pred             cCCCCC-CCCCCcCeEeecCCc
Q 045942           76 SLPEDM-HHVTTLKSLAIAECP   96 (131)
Q Consensus        76 ~lp~~~-~~l~~L~~L~i~~~~   96 (131)
                      .+|..+ .++++|+.|++.+|+
T Consensus       293 ~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          293 TLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHHHHHHhcCCCceEEEccCCc
Confidence            144444 334566666665554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.75  E-value=6.9e-06  Score=54.97  Aligned_cols=67  Identities=12%  Similarity=0.167  Sum_probs=49.7

Q ss_pred             CCCC-ccceEeecCcCCCcccc-hhhhccCC----CCcCEEeecCCCCcccCC-CCCCCcccccccccccccccCc
Q 045942            8 NTRP-HLRRVVIGEITQFLELP-QWLLQCCT----DTLQSLIIVDCPNFMALP-GSLKDLEALETLVIARCPKLSS   76 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp-~~~~~~~l----~~L~~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l~~   76 (131)
                      +..+ +|++|++++|..++.-- ..+  ..+    ++|+.|++++|++++.-- ..+..+++|++|++++|+.++.
T Consensus        81 L~~~~~L~~L~L~~C~~ItD~gL~~L--~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A           81 MEGLQYVEKIRLCKCHYIEDGCLERL--SQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             GTTCSCCCEEEEESCTTCCHHHHHHH--HTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             hcCCCCCCEEEeCCCCccCHHHHHHH--HhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence            5567 99999999998775422 223  333    479999999998776422 2466789999999999997764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.63  E-value=0.0002  Score=51.62  Aligned_cols=77  Identities=10%  Similarity=0.168  Sum_probs=55.1

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCccccc-ccccccccccCcCCC-CCCCCCCcC
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALE-TLVIARCPKLSSLPE-DMHHVTTLK   88 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~-~L~l~~c~~l~~lp~-~~~~l~~L~   88 (131)
                      +|+++++.++ .+..+|...| ..+++|+.+++.+.  +..++. .+..+++|+ .+.+.+  .++.++. .+..+++|+
T Consensus       227 ~L~~l~L~~n-~i~~I~~~aF-~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          227 NLVSLDISKT-NATTIPDFTF-AQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             TCCEEECTTB-CCCEECTTTT-TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred             CCeEEECCCC-CcceecHhhh-hCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence            7788888764 4777886655 67788888888764  677764 466777888 887765  5667764 467777888


Q ss_pred             eEeecC
Q 045942           89 SLAIAE   94 (131)
Q Consensus        89 ~L~i~~   94 (131)
                      .+.+.+
T Consensus       301 ~l~l~~  306 (329)
T 3sb4_A          301 YVLATG  306 (329)
T ss_dssp             EEEECS
T ss_pred             EEEeCC
Confidence            888754

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.46  E-value=1.2e-05  Score=58.73  Aligned_cols=80  Identities=14%  Similarity=0.122  Sum_probs=49.2

Q ss_pred             ccceEeecCcCCCcccc-----hhhhccCCC-CcCEEeecCCCCcccC-CCCCCCc-----ccccccccccccccCcCCC
Q 045942           12 HLRRVVIGEITQFLELP-----QWLLQCCTD-TLQSLIIVDCPNFMAL-PGSLKDL-----EALETLVIARCPKLSSLPE   79 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp-----~~~~~~~l~-~L~~L~l~~~~~l~~l-p~~l~~l-----~sL~~L~l~~c~~l~~lp~   79 (131)
                      +|++|++++|. +...+     ..+  ..++ +|+.|++++| .+... +..+..+     ++|++|++++|. +...+.
T Consensus        23 ~L~~L~Ls~n~-l~~~~~~~l~~~l--~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~   97 (362)
T 3goz_A           23 GVTSLDLSLNN-LYSISTVELIQAF--ANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSS   97 (362)
T ss_dssp             TCCEEECTTSC-GGGSCHHHHHHHH--HTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCH
T ss_pred             CceEEEccCCC-CChHHHHHHHHHH--HhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHH
Confidence            58888888764 66655     334  5677 7888888887 45443 2233333     778888887764 333322


Q ss_pred             C-----CCCC-CCcCeEeecCCc
Q 045942           80 D-----MHHV-TTLKSLAIAECP   96 (131)
Q Consensus        80 ~-----~~~l-~~L~~L~i~~~~   96 (131)
                      .     +... ++|++|++.+|.
T Consensus        98 ~~l~~~l~~~~~~L~~L~Ls~N~  120 (362)
T 3goz_A           98 DELVKTLAAIPFTITVLDLGWND  120 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECCSSC
T ss_pred             HHHHHHHHhCCCCccEEECcCCc
Confidence            1     2233 577777777665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.40  E-value=0.00014  Score=55.91  Aligned_cols=10  Identities=10%  Similarity=0.434  Sum_probs=5.6

Q ss_pred             ccceEeecCc
Q 045942           12 HLRRVVIGEI   21 (131)
Q Consensus        12 ~L~~L~i~~c   21 (131)
                      +|++|++++|
T Consensus       165 ~L~~L~L~~~  174 (592)
T 3ogk_B          165 KIKTLLMEES  174 (592)
T ss_dssp             TCSEEECTTC
T ss_pred             CCCEEECccc
Confidence            5555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.38  E-value=8.8e-05  Score=52.69  Aligned_cols=61  Identities=16%  Similarity=0.195  Sum_probs=42.9

Q ss_pred             cCCCCcCEEeecCCCCcccC---CCCCCCcccccccccccccccCcCCCCCCCCC--CcCeEeecCCch
Q 045942           34 CCTDTLQSLIIVDCPNFMAL---PGSLKDLEALETLVIARCPKLSSLPEDMHHVT--TLKSLAIAECPA   97 (131)
Q Consensus        34 ~~l~~L~~L~l~~~~~l~~l---p~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~--~L~~L~i~~~~~   97 (131)
                      ..+++|+.|+++++ .+..+   |..+..+++|+.|+++++ .+..+ ..+..+.  +|++|++.+++-
T Consensus       167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl  232 (267)
T 3rw6_A          167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSL  232 (267)
T ss_dssp             HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTT
T ss_pred             hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcC
Confidence            35788999999988 55554   344567899999999875 45554 2233333  899999998883

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.36  E-value=1.1e-05  Score=62.11  Aligned_cols=60  Identities=20%  Similarity=0.275  Sum_probs=26.7

Q ss_pred             CCCcCEEeecCCCCccc--CCCCCCCcccccccccccccccCc-----CCCCCCCCCCcCeEeecCCc
Q 045942           36 TDTLQSLIIVDCPNFMA--LPGSLKDLEALETLVIARCPKLSS-----LPEDMHHVTTLKSLAIAECP   96 (131)
Q Consensus        36 l~~L~~L~l~~~~~l~~--lp~~l~~l~sL~~L~l~~c~~l~~-----lp~~~~~l~~L~~L~i~~~~   96 (131)
                      +++|+.|++.+|..+..  ++.....+++|++|++.+|. +..     ++.....+++|++|++.+|.
T Consensus       129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA  195 (594)
T ss_dssp             CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred             CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccC
Confidence            44555555555533322  22222345555555555554 111     22222244456666665553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.33  E-value=4.8e-05  Score=58.45  Aligned_cols=80  Identities=18%  Similarity=0.194  Sum_probs=47.0

Q ss_pred             ccceEeecCcCCCcc--cchhhhccCCCCcCEEeecCCCCccc-----CCCCCCCcccccccccccccccCcCC-----C
Q 045942           12 HLRRVVIGEITQFLE--LPQWLLQCCTDTLQSLIIVDCPNFMA-----LPGSLKDLEALETLVIARCPKLSSLP-----E   79 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~--lp~~~~~~~l~~L~~L~l~~~~~l~~-----lp~~l~~l~sL~~L~l~~c~~l~~lp-----~   79 (131)
                      +|++|++++|..+..  ++...  ..+++|+.|++++|. +..     ++.....+++|+.|++.+|.  ..+.     .
T Consensus       131 ~L~~L~L~~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~  205 (594)
T 2p1m_B          131 NFKVLVLSSCEGFSTDGLAAIA--ATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALER  205 (594)
T ss_dssp             TCCEEEEESCEEEEHHHHHHHH--HHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHH
T ss_pred             CCcEEeCCCcCCCCHHHHHHHH--HhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHH
Confidence            667777766654433  33333  467888888888874 322     22223356788888887764  1121     1


Q ss_pred             CCCCCCCcCeEeecCCc
Q 045942           80 DMHHVTTLKSLAIAECP   96 (131)
Q Consensus        80 ~~~~l~~L~~L~i~~~~   96 (131)
                      -...+++|++|++.+|.
T Consensus       206 l~~~~~~L~~L~L~~~~  222 (594)
T 2p1m_B          206 LVTRCPNLKSLKLNRAV  222 (594)
T ss_dssp             HHHHCTTCCEEECCTTS
T ss_pred             HHHhCCCCcEEecCCCC
Confidence            12235688888888773

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.31  E-value=0.00072  Score=48.62  Aligned_cols=81  Identities=12%  Similarity=0.166  Sum_probs=64.0

Q ss_pred             CCCCCC-ccceEeecCcCCCcccchhhhccCCCCcC-EEeecCCCCcccCC-CCCCCcccccccccccccccCcCCCC-C
Q 045942            6 RKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQ-SLIIVDCPNFMALP-GSLKDLEALETLVIARCPKLSSLPED-M   81 (131)
Q Consensus         6 ~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~-~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l~~lp~~-~   81 (131)
                      ..+.++ +|+.+++.+.  +..++...| ..+++|+ .+.+.+  .+..++ ..+..+++|+.+.+.. ..+..++.. +
T Consensus       244 ~aF~~~~~L~~l~l~~n--i~~I~~~aF-~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF  317 (329)
T 3sb4_A          244 FTFAQKKYLLKIKLPHN--LKTIGQRVF-SNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLGDELF  317 (329)
T ss_dssp             TTTTTCTTCCEEECCTT--CCEECTTTT-TTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEECTTTT
T ss_pred             hhhhCCCCCCEEECCcc--cceehHHHh-hCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCccchhhh
Confidence            457777 9999999763  888987665 7889999 999986  677886 4578899999999865 467888764 6


Q ss_pred             CCCCCcCeEee
Q 045942           82 HHVTTLKSLAI   92 (131)
Q Consensus        82 ~~l~~L~~L~i   92 (131)
                      .++++|+.++.
T Consensus       318 ~~~~~L~~ly~  328 (329)
T 3sb4_A          318 GNGVPSKLIYK  328 (329)
T ss_dssp             CTTCCCCEEEC
T ss_pred             cCCcchhhhcc
Confidence            77788888763

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.30  E-value=1.9e-05  Score=58.96  Aligned_cols=80  Identities=16%  Similarity=0.286  Sum_probs=46.0

Q ss_pred             ccceEeecCcCCCc-----ccchhhhccCCCCcCEEeecCCCCcccC-CCC-CCCcc----cccccccccccccC-----
Q 045942           12 HLRRVVIGEITQFL-----ELPQWLLQCCTDTLQSLIIVDCPNFMAL-PGS-LKDLE----ALETLVIARCPKLS-----   75 (131)
Q Consensus        12 ~L~~L~i~~c~~l~-----~lp~~~~~~~l~~L~~L~l~~~~~l~~l-p~~-l~~l~----sL~~L~l~~c~~l~-----   75 (131)
                      +|++|++++|. +.     .++..+  ..+++|++|+++++. +... +.. ...++    +|++|++++|. +.     
T Consensus        29 ~L~~L~L~~~~-l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~  103 (461)
T 1z7x_W           29 QCQVVRLDDCG-LTEARCKDISSAL--RVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCG  103 (461)
T ss_dssp             TCSEEEEESSC-CCHHHHHHHHHHH--HTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHH
T ss_pred             CccEEEccCCC-CCHHHHHHHHHHH--HhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHH
Confidence            67777777764 33     334445  566777777777763 3221 111 11222    57777777764 33     


Q ss_pred             cCCCCCCCCCCcCeEeecCCc
Q 045942           76 SLPEDMHHVTTLKSLAIAECP   96 (131)
Q Consensus        76 ~lp~~~~~l~~L~~L~i~~~~   96 (131)
                      .++..+..+++|++|++.+|.
T Consensus       104 ~l~~~l~~~~~L~~L~Ls~n~  124 (461)
T 1z7x_W          104 VLSSTLRTLPTLQELHLSDNL  124 (461)
T ss_dssp             HHHHHTTSCTTCCEEECCSSB
T ss_pred             HHHHHHccCCceeEEECCCCc
Confidence            345556666777777777665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.15  E-value=7.2e-05  Score=54.61  Aligned_cols=77  Identities=9%  Similarity=0.119  Sum_probs=52.5

Q ss_pred             EeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCC-----CCCCCcc-cccccccccccccCcC-CCCCCCC----
Q 045942           16 VVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALP-----GSLKDLE-ALETLVIARCPKLSSL-PEDMHHV----   84 (131)
Q Consensus        16 L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp-----~~l~~l~-sL~~L~l~~c~~l~~l-p~~~~~l----   84 (131)
                      +.++.+.--+.+|..+  ...++|+.|++++| .+...+     ..+..++ +|++|++++|. +... +..+..+    
T Consensus         3 ~~ls~n~~~~~~~~~~--~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~   78 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFT--SIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAI   78 (362)
T ss_dssp             EECCCCTTCCHHHHHH--TSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTS
T ss_pred             cccccccchHHHHHHH--hCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhcc
Confidence            4555543333445554  55566999999999 577665     4566778 89999999974 4443 3333332    


Q ss_pred             -CCcCeEeecCCc
Q 045942           85 -TTLKSLAIAECP   96 (131)
Q Consensus        85 -~~L~~L~i~~~~   96 (131)
                       ++|++|++.+|.
T Consensus        79 ~~~L~~L~Ls~n~   91 (362)
T 3goz_A           79 PANVTSLNLSGNF   91 (362)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             CCCccEEECcCCc
Confidence             799999999886

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.10  E-value=2.4e-05  Score=58.42  Aligned_cols=36  Identities=25%  Similarity=0.349  Sum_probs=18.1

Q ss_pred             cccccccccccccccC-----cCCCCCCCCCCcCeEeecCCc
Q 045942           60 LEALETLVIARCPKLS-----SLPEDMHHVTTLKSLAIAECP   96 (131)
Q Consensus        60 l~sL~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~i~~~~   96 (131)
                      .++|++|++++|. +.     .+|..+..+++|++|++.+|+
T Consensus       369 ~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          369 GSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             TCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             CCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            3455555555543 22     344444445556666665554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.96  E-value=0.00064  Score=52.23  Aligned_cols=14  Identities=21%  Similarity=0.116  Sum_probs=7.6

Q ss_pred             cCCCCcCEEeecCC
Q 045942           34 CCTDTLQSLIIVDC   47 (131)
Q Consensus        34 ~~l~~L~~L~l~~~   47 (131)
                      ..+++|+.|++++|
T Consensus       217 ~~~~~L~~L~L~~~  230 (592)
T 3ogk_B          217 RNCRSLVSVKVGDF  230 (592)
T ss_dssp             HHCTTCCEEECSSC
T ss_pred             hhCCCCcEEeccCc
Confidence            34455555555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.60  E-value=0.00019  Score=53.04  Aligned_cols=59  Identities=17%  Similarity=0.188  Sum_probs=26.8

Q ss_pred             CCCcCEEeecCCCCccc-----CCCCCCCcccccccccccccccC-----cCCCCCCCCCCcCeEeecCCc
Q 045942           36 TDTLQSLIIVDCPNFMA-----LPGSLKDLEALETLVIARCPKLS-----SLPEDMHHVTTLKSLAIAECP   96 (131)
Q Consensus        36 l~~L~~L~l~~~~~l~~-----lp~~l~~l~sL~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~i~~~~   96 (131)
                      .++|+.|++++| .+..     ++..+...++|++|++++|. ++     .++..+...++|++|++.+|.
T Consensus       154 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          154 QCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             TCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred             CCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence            355666666655 2322     22233445555556555543 22     122223333455555555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.46  E-value=5.9e-05  Score=55.76  Aligned_cols=14  Identities=14%  Similarity=0.171  Sum_probs=7.1

Q ss_pred             CCCCcCeEeecCCc
Q 045942           83 HVTTLKSLAIAECP   96 (131)
Q Consensus        83 ~l~~L~~L~i~~~~   96 (131)
                      ..++|++|++.+|.
T Consensus       181 ~~~~L~~L~Ls~N~  194 (372)
T 3un9_A          181 GNTSVTHLSLLHTG  194 (372)
T ss_dssp             TCSSCCEEECTTSS
T ss_pred             cCCCcCEEeCCCCC
Confidence            34455555555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.37  E-value=0.0017  Score=46.05  Aligned_cols=76  Identities=13%  Similarity=0.121  Sum_probs=49.5

Q ss_pred             ccceEeecCcCCCccc---chhhhccCCCCcCEEeecCCCCcccCCCCCCCcc--cccccccccccccCcCCC-------
Q 045942           12 HLRRVVIGEITQFLEL---PQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLE--ALETLVIARCPKLSSLPE-------   79 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~l---p~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~--sL~~L~l~~c~~l~~lp~-------   79 (131)
                      +|++|+++++ .+..+   |..+  ..+++|+.|+++++ .+..+. .+..+.  +|++|.+.+++.-..+|.       
T Consensus       171 ~L~~L~Ls~N-~l~~l~~l~~~~--~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          171 ELLSLNLSNN-RLYRLDDMSSIV--QKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             TCCEEECTTS-CCCCCGGGTTHH--HHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             CCCEEECCCC-CCCCCccchhHH--hhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            7888888875 45544   3444  57888999999887 566552 344444  888888888775554542       


Q ss_pred             CCCCCCCcCeEee
Q 045942           80 DMHHVTTLKSLAI   92 (131)
Q Consensus        80 ~~~~l~~L~~L~i   92 (131)
                      .+..+++|+.|+-
T Consensus       246 il~~~P~L~~LDg  258 (267)
T 3rw6_A          246 IRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHCTTCCEESS
T ss_pred             HHHHCcccCeECC
Confidence            1344566666653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.26  E-value=0.0024  Score=47.04  Aligned_cols=14  Identities=29%  Similarity=0.394  Sum_probs=9.4

Q ss_pred             CCCCcCeEeecCCc
Q 045942           83 HVTTLKSLAIAECP   96 (131)
Q Consensus        83 ~l~~L~~L~i~~~~   96 (131)
                      .+++|++|.+.+|.
T Consensus       250 ~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          250 RFPNLKWLGIVDAE  263 (362)
T ss_dssp             TCTTCCEEEEESCT
T ss_pred             CCCCcCEEeCCCCC
Confidence            35677777776665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.17  E-value=0.063  Score=39.85  Aligned_cols=12  Identities=17%  Similarity=0.271  Sum_probs=6.0

Q ss_pred             CCCC-ccceEeec
Q 045942            8 NTRP-HLRRVVIG   19 (131)
Q Consensus         8 i~~l-~L~~L~i~   19 (131)
                      +.++ +|+.+.+.
T Consensus       222 F~~~~~L~~l~l~  234 (401)
T 4fdw_A          222 FLKTSQLKTIEIP  234 (401)
T ss_dssp             TTTCTTCCCEECC
T ss_pred             hhCCCCCCEEecC
Confidence            3444 55555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=95.93  E-value=0.00051  Score=50.69  Aligned_cols=92  Identities=14%  Similarity=0.122  Sum_probs=46.1

Q ss_pred             CCCCcCEEeecCCCC-------cccCCCCC--CCcccccccccccccccCcCCCC---CCCCCCcCeEeecCCchhhhhc
Q 045942           35 CTDTLQSLIIVDCPN-------FMALPGSL--KDLEALETLVIARCPKLSSLPED---MHHVTTLKSLAIAECPALSERC  102 (131)
Q Consensus        35 ~l~~L~~L~l~~~~~-------l~~lp~~l--~~l~sL~~L~l~~c~~l~~lp~~---~~~l~~L~~L~i~~~~~l~~~~  102 (131)
                      .+|+|+.|+++.+.+       +..+-..+  ..+++|+.|.+.+|......+..   ...+++|++|+++.+. +...-
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G  295 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEG  295 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHH
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHH
Confidence            577888887753211       21111112  34788888888776532111110   1245688899887654 22110


Q ss_pred             CCCCCCCCCcccCCCeeEecCcccC
Q 045942          103 KPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus       103 ~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                      ..........++++..|.+.++.+.
T Consensus       296 ~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          296 ARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             HHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             HHHHHhhcccCCcceEEECCCCcCC
Confidence            0000001134567777777766553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.91  E-value=0.076  Score=39.41  Aligned_cols=53  Identities=11%  Similarity=0.270  Sum_probs=21.4

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccc
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIA   69 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~   69 (131)
                      +|+.+++.++ .+..++...|  ..++|+.+.+.+  .+..++. .+..+++|+.+.+.
T Consensus       181 ~L~~l~l~~n-~l~~I~~~aF--~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          181 NLKKADLSKT-KITKLPASTF--VYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             TCCEEECTTS-CCSEECTTTT--TTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECC
T ss_pred             cCCeeecCCC-cceEechhhE--eecccCEEEeCC--chheehhhHhhCCCCCCEEecC
Confidence            4444444332 3444443331  224444444431  2333332 23344555555553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.77  E-value=0.0017  Score=43.07  Aligned_cols=110  Identities=18%  Similarity=0.131  Sum_probs=65.8

Q ss_pred             ccceEeecCcCCCcc-----cchhhhccCCCCcCEEeecCCCCccc-----CCCCCCCcccccccccccccccCc-----
Q 045942           12 HLRRVVIGEITQFLE-----LPQWLLQCCTDTLQSLIIVDCPNFMA-----LPGSLKDLEALETLVIARCPKLSS-----   76 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~-----lp~~~~~~~l~~L~~L~l~~~~~l~~-----lp~~l~~l~sL~~L~l~~c~~l~~-----   76 (131)
                      +|++|++++|..+..     +...+  ...++|+.|++++| .+..     +.+.+...++|++|++++|. ++.     
T Consensus        37 ~L~~L~L~~n~~i~~~g~~~l~~~L--~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~  112 (185)
T 1io0_A           37 DLEEVNLNNIMNIPVPTLKACAEAL--KTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILA  112 (185)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHH--TTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHH
T ss_pred             CCCEEEecCCCCCCHHHHHHHHHHH--HhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHH
Confidence            799999988734432     33445  56789999999998 3432     22334556789999998864 332     


Q ss_pred             CCCCCCCCCCcCeEee--cCCchhhhhcCCCCCCCCCcccCCCeeEecCccc
Q 045942           77 LPEDMHHVTTLKSLAI--AECPALSERCKPPTGEDWPKIAHIPEILLDDKMI  126 (131)
Q Consensus        77 lp~~~~~l~~L~~L~i--~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~  126 (131)
                      +...+...++|++|++  .++.- ..............-++++.+.+.++.+
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i-~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPL-GNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCC-CHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCCCceEEEecCCCCCC-CHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            3445556678999999  55541 1100000001112235677777777655

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.23  E-value=0.028  Score=35.22  Aligned_cols=35  Identities=31%  Similarity=0.425  Sum_probs=18.6

Q ss_pred             CCcCEEeecCCCCcccCCCC-CCCccccccccccccc
Q 045942           37 DTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCP   72 (131)
Q Consensus        37 ~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~   72 (131)
                      ++|+.|+++++ .+..+|.. +..+++|+.|++.++|
T Consensus        31 ~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           31 VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence            34566666655 45555532 3445555555555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.10  E-value=0.038  Score=34.59  Aligned_cols=51  Identities=18%  Similarity=0.329  Sum_probs=38.0

Q ss_pred             EeecCCCCcc--cCCCCCCCcccccccccccccccCcCCCC-CCCCCCcCeEeecCCc
Q 045942           42 LIIVDCPNFM--ALPGSLKDLEALETLVIARCPKLSSLPED-MHHVTTLKSLAIAECP   96 (131)
Q Consensus        42 L~l~~~~~l~--~lp~~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~L~i~~~~   96 (131)
                      ++-++. .+.  .+|..+.  ++|++|+++++ .+..+|.. +..+++|+.|++.++|
T Consensus        13 v~Cs~~-~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           13 VDCGRR-GLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EECCSS-CCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEeCCC-CCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence            443433 566  7886543  57999999884 68899876 5778899999998776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=94.64  E-value=0.0033  Score=41.71  Aligned_cols=80  Identities=21%  Similarity=0.198  Sum_probs=55.3

Q ss_pred             ccceEeecCcCCCcc-----cchhhhccCCCCcCEEeecCCCCccc-----CCCCCCCccccccccc--ccccccCc---
Q 045942           12 HLRRVVIGEITQFLE-----LPQWLLQCCTDTLQSLIIVDCPNFMA-----LPGSLKDLEALETLVI--ARCPKLSS---   76 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~-----lp~~~~~~~l~~L~~L~l~~~~~l~~-----lp~~l~~l~sL~~L~l--~~c~~l~~---   76 (131)
                      +|++|++++|. +..     +...+  ...++|+.|++++| .+..     +...+...++|++|++  .++. ++.   
T Consensus        66 ~L~~L~Ls~n~-i~~~g~~~l~~~L--~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~  140 (185)
T 1io0_A           66 YVKKFSIVGTR-SNDPVAFALAEML--KVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVE  140 (185)
T ss_dssp             SCCEEECTTSC-CCHHHHHHHHHHH--HHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHH
T ss_pred             CcCEEECcCCC-CChHHHHHHHHHH--HhCCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHH
Confidence            79999999874 432     33344  45688999999998 4543     3455677789999999  5553 332   


Q ss_pred             --CCCCCCCCCCcCeEeecCCc
Q 045942           77 --LPEDMHHVTTLKSLAIAECP   96 (131)
Q Consensus        77 --lp~~~~~l~~L~~L~i~~~~   96 (131)
                        +...+...++|++|++.+|.
T Consensus       141 ~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          141 MEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHhCCCcCEEeccCCC
Confidence              23334445689999998876

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=93.90  E-value=0.3  Score=35.70  Aligned_cols=37  Identities=22%  Similarity=0.451  Sum_probs=17.2

Q ss_pred             CCCcccccccccccccccCcCCCC-CCCCCCcCeEeecCC
Q 045942           57 LKDLEALETLVIARCPKLSSLPED-MHHVTTLKSLAIAEC   95 (131)
Q Consensus        57 l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~L~i~~~   95 (131)
                      +..+++|+.+.|..  .++.++.. +.+.++|+.+.+.+.
T Consensus       330 F~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          330 FAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred             hhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence            33445555554432  24444432 344555555555543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=93.04  E-value=0.93  Score=33.03  Aligned_cols=100  Identities=13%  Similarity=0.212  Sum_probs=56.2

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCC-CCCCCCcCe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPED-MHHVTTLKS   89 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~   89 (131)
                      .|+.+.+.+  .+..+....| ...++|+.+.+..  .+..+++ .+..+++|+.+.|.+  .++.+... +..+++|+.
T Consensus       266 ~L~~i~lp~--~~~~I~~~aF-~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~  338 (394)
T 4gt6_A          266 YLASVKMPD--SVVSIGTGAF-MNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLER  338 (394)
T ss_dssp             SCCEEECCT--TCCEECTTTT-TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCE
T ss_pred             cccEEeccc--ccceecCccc-ccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCE
Confidence            455555432  2334443333 4567777777752  4666664 356678888888754  36666654 566778888


Q ss_pred             EeecCCchhhhhcCCCCCCCCCcccCCCeeEecCc
Q 045942           90 LAIAECPALSERCKPPTGEDWPKIAHIPEILLDDK  124 (131)
Q Consensus        90 L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~  124 (131)
                      +.+...  +    ...+...+....++..+.+.++
T Consensus       339 i~ip~s--v----~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          339 IAIPSS--V----TKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             EEECTT--C----CBCCGGGGTTCTTCCEEEESSC
T ss_pred             EEECcc--c----CEEhHhHhhCCCCCCEEEECCc
Confidence            887432  1    1112233445556666666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=92.71  E-value=0.43  Score=34.49  Aligned_cols=30  Identities=20%  Similarity=0.311  Sum_probs=12.7

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEee
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLII   44 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l   44 (131)
                      .|+.+.+-.  .+..+....+ ....+|+.+.+
T Consensus       241 ~L~~i~lp~--~v~~I~~~aF-~~~~~l~~i~l  270 (379)
T 4h09_A          241 ALDEIAIPK--NVTSIGSFLL-QNCTALKTLNF  270 (379)
T ss_dssp             SCCEEEECT--TCCEECTTTT-TTCTTCCEEEE
T ss_pred             cceEEEcCC--CccEeCcccc-ceeehhccccc
Confidence            455555532  2334433222 33444555544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=92.18  E-value=0.55  Score=34.27  Aligned_cols=56  Identities=13%  Similarity=0.163  Sum_probs=24.1

Q ss_pred             cCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCC-CCCCCCcCeEeec
Q 045942           34 CCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPED-MHHVTTLKSLAIA   93 (131)
Q Consensus        34 ~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~L~i~   93 (131)
                      ...++|+.+.+.+  .+..++. .+.++++|+.+.+..  .++.++.. +..+++|+.+.+.
T Consensus       317 ~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          317 ESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             TTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred             cCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence            3444555554432  2333432 234445555554432  24444332 3444455555543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=90.20  E-value=0.41  Score=34.98  Aligned_cols=58  Identities=7%  Similarity=0.031  Sum_probs=35.0

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCccccccccccc
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIAR   70 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~   70 (131)
                      +.+. +|+.+.|.+  .++.+....| ..+++|+.+.+..  .+..++. .+..+++|+.+.+..
T Consensus       316 F~~c~~L~~i~lp~--~v~~I~~~aF-~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          316 FESCTSLVSIDLPY--LVEEIGKRSF-RGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             TTTCTTCCEECCCT--TCCEECTTTT-TTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred             hcCCCCCCEEEeCC--cccEEhHHhc-cCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence            4444 666666632  3556654443 5677888887753  3566653 466677777777643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=89.68  E-value=2.5  Score=30.36  Aligned_cols=11  Identities=9%  Similarity=0.217  Sum_probs=4.6

Q ss_pred             CCCCcCEEeec
Q 045942           35 CTDTLQSLIIV   45 (131)
Q Consensus        35 ~l~~L~~L~l~   45 (131)
                      ..++|+.+.+.
T Consensus       284 ~c~~L~~i~l~  294 (379)
T 4h09_A          284 GCSNLTKVVMD  294 (379)
T ss_dssp             TCTTCCEEEEC
T ss_pred             ccccccccccc
Confidence            33444444443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=81.72  E-value=0.36  Score=32.51  Aligned_cols=80  Identities=13%  Similarity=0.190  Sum_probs=49.2

Q ss_pred             ccceEeecCcCCCcc-----cchhhhccCCCCcCEEeecCCCCccc-----CCCCCCCcccccccccccccccC-----c
Q 045942           12 HLRRVVIGEITQFLE-----LPQWLLQCCTDTLQSLIIVDCPNFMA-----LPGSLKDLEALETLVIARCPKLS-----S   76 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~-----lp~~~~~~~l~~L~~L~l~~~~~l~~-----lp~~l~~l~sL~~L~l~~c~~l~-----~   76 (131)
                      .|++|+++++..+..     +-+.+  ..-++|+.|++++| .+..     +-+.+..-++|++|++.++. ++     .
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL--~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~a  117 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAA--CNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF-LTPELLAR  117 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHH--TTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHH
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHH--hhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHHHH
Confidence            688888876534432     33444  55678999999888 3432     22233345788889887753 32     2


Q ss_pred             CCCCCCCCCCcCeEeecCC
Q 045942           77 LPEDMHHVTTLKSLAIAEC   95 (131)
Q Consensus        77 lp~~~~~l~~L~~L~i~~~   95 (131)
                      +-+.+..-++|++|++.++
T Consensus       118 la~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHhhCCceeEEECCCC
Confidence            2233444457889988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	131
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.04
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.98
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.94
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.93
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.93
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.89
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.83
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.82
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.78
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.75
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.74
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.66
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.65
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.58
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.56
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.5
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.48
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.48
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.47
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.45
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.44
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.29
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.28
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.2
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.1
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.06
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.06
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.01
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.98
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.88
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.87
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.81
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.87
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.29
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.85
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	92.52
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	92.46
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	90.37
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	89.91

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=7.7e-10  Score=71.19  Aligned_cols=91  Identities=18%  Similarity=0.147  Sum_probs=75.4

Q ss_pred             CCCCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCC-CCCCCcccccccccccccccCcCCCC
Q 045942            3 HHDRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALP-GSLKDLEALETLVIARCPKLSSLPED   80 (131)
Q Consensus         3 ~~~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l~~lp~~   80 (131)
                      +.|..+..+ +|++|++.+.+.++.++...| ..+++|+.|+++++ .+..++ ..+..+++|++|+++++ .++.+|..
T Consensus        22 ~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f-~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~l~~~   98 (156)
T d2ifga3          22 DSLHHLPGAENLTELYIENQQHLQHLELRDL-RGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWK   98 (156)
T ss_dssp             TTTTTSCSCSCCSEEECCSCSSCCEECGGGS-CSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS-CCSCCCST
T ss_pred             cCcccccCccccCeeecCCCccccccCchhh-ccccccCcceeecc-ccCCcccccccccccccceeccCC-CCcccChh
Confidence            456778888 999999988777999986543 78999999999998 788886 45788999999999885 68899987


Q ss_pred             CCCCCCcCeEeecCCc
Q 045942           81 MHHVTTLKSLAIAECP   96 (131)
Q Consensus        81 ~~~l~~L~~L~i~~~~   96 (131)
                      .....+|+.|++.+++
T Consensus        99 ~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          99 TVQGLSLQELVLSGNP  114 (156)
T ss_dssp             TTCSCCCCEEECCSSC
T ss_pred             hhccccccccccCCCc
Confidence            6555589999998766

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.98  E-value=8.2e-10  Score=68.48  Aligned_cols=83  Identities=14%  Similarity=0.187  Sum_probs=51.3

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCC--CCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPE--DMHHV   84 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~--~~~~l   84 (131)
                      +..+ +|++|+++++ .+..+|+.+  ..+++|+.|+++++ .+..+| .+..+++|++|++.++ .+..+|.  .+..+
T Consensus        16 l~~l~~L~~L~ls~N-~l~~lp~~~--~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~~   89 (124)
T d1dcea3          16 LEQLLLVTHLDLSHN-RLRALPPAL--AALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSC   89 (124)
T ss_dssp             GGGGTTCCEEECCSS-CCCCCCGGG--GGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGC
T ss_pred             cccCCCCCEEECCCC-ccCcchhhh--hhhhcccccccccc-cccccC-ccccccccCeEECCCC-ccCCCCCchhhcCC
Confidence            4445 6677777654 466666655  56677777777766 566664 3666677777777664 3554442  34556


Q ss_pred             CCcCeEeecCCc
Q 045942           85 TTLKSLAIAECP   96 (131)
Q Consensus        85 ~~L~~L~i~~~~   96 (131)
                      ++|+.|++.+++
T Consensus        90 ~~L~~L~l~~N~  101 (124)
T d1dcea3          90 PRLVLLNLQGNS  101 (124)
T ss_dssp             TTCCEEECTTSG
T ss_pred             CCCCEEECCCCc
Confidence            667777776655

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.94  E-value=5.2e-09  Score=68.98  Aligned_cols=108  Identities=11%  Similarity=0.149  Sum_probs=72.8

Q ss_pred             ccceEeecCcCCCcc-cchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCC-CCCCCCcCe
Q 045942           12 HLRRVVIGEITQFLE-LPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPED-MHHVTTLKS   89 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~-lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~   89 (131)
                      ++++|+++++ .+.. ++...| ..+++|+.|+++++......+..+..+++|++|+++++ ++..+|.. +.++++|++
T Consensus        30 ~l~~L~Ls~N-~i~~~~~~~~f-~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N-~l~~l~~~~F~~l~~L~~  106 (192)
T d1w8aa_          30 HTTELLLNDN-ELGRISSDGLF-GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKT  106 (192)
T ss_dssp             TCSEEECCSC-CCCSBCCSCSG-GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCE
T ss_pred             CCCEEEeCCC-CCccccccccc-CCCceEeeeeccccccccccccccccccccceeeeccc-cccccCHHHHhCCCcccc
Confidence            7888888875 4543 443333 67888889988887433333456777888888888875 57777654 677888888


Q ss_pred             EeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           90 LAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        90 L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                      |++.++.- ..    .....+..+.+++.+.+.++.+.
T Consensus       107 L~L~~N~l-~~----i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         107 LNLYDNQI-SC----VMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             EECCSSCC-CE----ECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccCCccc-cc----cCHHHhcCCcccccccccccccc
Confidence            88887652 11    11223455677778887777654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=6.4e-09  Score=71.70  Aligned_cols=80  Identities=19%  Similarity=0.116  Sum_probs=66.9

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLA   91 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~   91 (131)
                      ++++|+++++ .+..+|...| ..+++|+.|+++++ .+..+|. ++.+++|++|+++++ .+...+..+..+++|+.|+
T Consensus        32 ~l~~L~Ls~N-~i~~l~~~~f-~~l~~L~~L~L~~N-~l~~l~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~  106 (266)
T d1p9ag_          32 DTTILHLSEN-LLYTFSLATL-MPYTRLTQLNLDRA-ELTKLQV-DGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLD  106 (266)
T ss_dssp             TCCEEECTTS-CCSEEEGGGG-TTCTTCCEEECTTS-CCCEEEC-CSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEE
T ss_pred             CCCEEECcCC-cCCCcCHHHh-hccccccccccccc-ccccccc-ccccccccccccccc-ccccccccccccccccccc
Confidence            7999999885 6888885533 78999999999998 7888874 567999999999986 5777888888899999999


Q ss_pred             ecCCc
Q 045942           92 IAECP   96 (131)
Q Consensus        92 i~~~~   96 (131)
                      +.++.
T Consensus       107 l~~~~  111 (266)
T d1p9ag_         107 VSFNR  111 (266)
T ss_dssp             CCSSC
T ss_pred             ccccc
Confidence            88765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.93  E-value=1.1e-09  Score=67.99  Aligned_cols=104  Identities=15%  Similarity=0.148  Sum_probs=80.6

Q ss_pred             ceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEeec
Q 045942           14 RRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAIA   93 (131)
Q Consensus        14 ~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~   93 (131)
                      |+|+++++ +++.++. +  +.+++|+.|+++++ .++.+|..++.+++|+.|+++++ .++.+| .+..+++|++|++.
T Consensus         1 R~L~Ls~n-~l~~l~~-l--~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHK-DLTVLCH-L--EQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTS-CCSSCCC-G--GGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECC
T ss_pred             CEEEcCCC-CCCCCcc-c--ccCCCCCEEECCCC-ccCcchhhhhhhhcccccccccc-cccccC-ccccccccCeEECC
Confidence            57899885 6777764 6  78899999999988 78999988999999999999985 678886 47889999999998


Q ss_pred             CCchhhhhcCCCCCCCCCcccCCCeeEecCcccCC
Q 045942           94 ECPALSERCKPPTGEDWPKIAHIPEILLDDKMIKS  128 (131)
Q Consensus        94 ~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~  128 (131)
                      ++.--.    .+.......+.++..+.+.++.+..
T Consensus        74 ~N~i~~----~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          74 NNRLQQ----SAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SSCCCS----SSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCccCC----CCCchhhcCCCCCCEEECCCCcCCc
Confidence            875211    0111234556788888998888643

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.89  E-value=4.4e-10  Score=79.10  Aligned_cols=90  Identities=19%  Similarity=0.227  Sum_probs=50.8

Q ss_pred             CCCCCCC-ccceEeecCcCCCc-ccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCC
Q 045942            5 DRKNTRP-HLRRVVIGEITQFL-ELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMH   82 (131)
Q Consensus         5 ~~~i~~l-~L~~L~i~~c~~l~-~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~   82 (131)
                      |++++++ +|++|++++|+.+. .+|..+  +.+++|++|+++++......+..+..+..|+.+++..+.....+|..+.
T Consensus        69 p~~l~~L~~L~~L~Ls~~N~l~g~iP~~i--~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~  146 (313)
T d1ogqa_          69 PSSLANLPYLNFLYIGGINNLVGPIPPAI--AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEETTEESCCCGGG--GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             ChHHhcCcccccccccccccccccccccc--ccccccchhhhccccccccccccccchhhhcccccccccccccCchhhc
Confidence            4555555 66666665544433 556555  5666666666666532222233345555666666655555555666666


Q ss_pred             CCCCcCeEeecCCc
Q 045942           83 HVTTLKSLAIAECP   96 (131)
Q Consensus        83 ~l~~L~~L~i~~~~   96 (131)
                      .++.|+.+++.++.
T Consensus       147 ~l~~L~~l~l~~n~  160 (313)
T d1ogqa_         147 SLPNLVGITFDGNR  160 (313)
T ss_dssp             GCTTCCEEECCSSC
T ss_pred             cCcccceeeccccc
Confidence            66666666666553

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=2e-09  Score=69.59  Aligned_cols=108  Identities=12%  Similarity=0.192  Sum_probs=69.4

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCC-CCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDM-HHVT   85 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~-~~l~   85 (131)
                      +.++ ++++|+++++ ++..++...  ..+++|+.|+++++ .+..++ .+..+++|++|++++| .+..+|..+ ..++
T Consensus        14 ~~n~~~lr~L~L~~n-~I~~i~~~~--~~l~~L~~L~Ls~N-~i~~l~-~~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~   87 (162)
T d1a9na_          14 YTNAVRDRELDLRGY-KIPVIENLG--ATLDQFDAIDFSDN-EIRKLD-GFPLLRRLKTLLVNNN-RICRIGEGLDQALP   87 (162)
T ss_dssp             EECTTSCEEEECTTS-CCCSCCCGG--GGTTCCSEEECCSS-CCCEEC-CCCCCSSCCEEECCSS-CCCEECSCHHHHCT
T ss_pred             ccCcCcCcEEECCCC-CCCccCccc--cccccCCEEECCCC-CCCccC-CcccCcchhhhhcccc-cccCCCcccccccc
Confidence            4455 7888888775 577776544  56778888888887 677774 5777888888888776 466666653 4567


Q ss_pred             CcCeEeecCCc--hhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           86 TLKSLAIAECP--ALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        86 ~L~~L~i~~~~--~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                      +|++|++.++.  .+.+      -.....++++..+.+.++.+.
T Consensus        88 ~L~~L~L~~N~i~~~~~------l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          88 DLTELILTNNSLVELGD------LDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             TCCEEECCSCCCCCGGG------GGGGGGCTTCCEEECCSSGGG
T ss_pred             ccccceecccccccccc------ccccccccccchhhcCCCccc
Confidence            78888877764  1211      011234455666666666543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.82  E-value=2.1e-09  Score=75.51  Aligned_cols=84  Identities=18%  Similarity=0.252  Sum_probs=67.7

Q ss_pred             ccceEeecCcCCCc--ccchhhhccCCCCcCEEeecCCCCcc-cCCCCCCCcccccccccccccccCcCCCCCCCCCCcC
Q 045942           12 HLRRVVIGEITQFL--ELPQWLLQCCTDTLQSLIIVDCPNFM-ALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLK   88 (131)
Q Consensus        12 ~L~~L~i~~c~~l~--~lp~~~~~~~l~~L~~L~l~~~~~l~-~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~   88 (131)
                      .++.|+++++..-.  .+|..+  +.+++|++|++++|..+. .+|..++++++|++|+++++......+..+..++.|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l--~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSL--ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGG--GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChHH--hcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence            58889998864322  688888  899999999999865554 8999999999999999999765554555677788999


Q ss_pred             eEeecCCch
Q 045942           89 SLAIAECPA   97 (131)
Q Consensus        89 ~L~i~~~~~   97 (131)
                      .+++..+..
T Consensus       129 ~l~l~~N~~  137 (313)
T d1ogqa_         129 TLDFSYNAL  137 (313)
T ss_dssp             EEECCSSEE
T ss_pred             ccccccccc
Confidence            999887653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.78  E-value=1.1e-08  Score=67.30  Aligned_cols=87  Identities=18%  Similarity=0.238  Sum_probs=70.2

Q ss_pred             CCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCC-CC
Q 045942            6 RKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPED-MH   82 (131)
Q Consensus         6 ~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~-~~   82 (131)
                      ..+.++ +|++|+++++. +..++.+.+ ..+++|+.|+++++ .+..+|. .+..+++|++|+++++ .++.+|++ +.
T Consensus        48 ~~f~~l~~L~~L~L~~N~-i~~~~~~~~-~~~~~L~~L~Ls~N-~l~~l~~~~F~~l~~L~~L~L~~N-~l~~i~~~~f~  123 (192)
T d1w8aa_          48 GLFGRLPHLVKLELKRNQ-LTGIEPNAF-EGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFE  123 (192)
T ss_dssp             CSGGGCTTCCEEECCSSC-CCCBCTTTT-TTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSST
T ss_pred             cccCCCceEeeeeccccc-ccccccccc-ccccccceeeeccc-cccccCHHHHhCCCcccccccCCc-cccccCHHHhc
Confidence            445667 99999998864 556654433 78999999999998 7888875 5788999999999986 68888765 78


Q ss_pred             CCCCcCeEeecCCc
Q 045942           83 HVTTLKSLAIAECP   96 (131)
Q Consensus        83 ~l~~L~~L~i~~~~   96 (131)
                      .+++|++|++.+++
T Consensus       124 ~l~~L~~l~L~~N~  137 (192)
T d1w8aa_         124 HLNSLTSLNLASNP  137 (192)
T ss_dssp             TCTTCCEEECTTCC
T ss_pred             CCcccccccccccc
Confidence            89999999998765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.75  E-value=3.7e-08  Score=68.68  Aligned_cols=112  Identities=15%  Similarity=0.061  Sum_probs=79.8

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCC-CCCCCcccccccccccccccCcCCCCCCCCCCcCeE
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALP-GSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSL   90 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L   90 (131)
                      +|++|++.++......+..+  ..++.++.|.++++ .+..++ ..+..+++|++|++++| .++.+|.++..+++|++|
T Consensus       172 ~L~~L~l~~n~~~~~~~~~~--~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L  247 (305)
T d1xkua_         172 SLTELHLDGNKITKVDAASL--KGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVV  247 (305)
T ss_dssp             TCSEEECTTSCCCEECTGGG--TTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEE
T ss_pred             ccCEEECCCCcCCCCChhHh--hccccccccccccc-cccccccccccccccceeeecccc-cccccccccccccCCCEE
Confidence            77888887765544445555  67888899999888 666664 55778899999999987 688999999999999999


Q ss_pred             eecCCchhhhhcCC--CCCCCCCcccCCCeeEecCcccCC
Q 045942           91 AIAECPALSERCKP--PTGEDWPKIAHIPEILLDDKMIKS  128 (131)
Q Consensus        91 ~i~~~~~l~~~~~~--~~~~~~~~i~~l~~l~~~~~~~~~  128 (131)
                      +++++. ++..-..  .....-....++..+.+.++.++.
T Consensus       248 ~Ls~N~-i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         248 YLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             ECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             ECCCCc-cCccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            999874 3321100  001112345678888888887753

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=4.4e-08  Score=67.36  Aligned_cols=118  Identities=14%  Similarity=0.091  Sum_probs=74.3

Q ss_pred             CCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCC
Q 045942            6 RKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHV   84 (131)
Q Consensus         6 ~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l   84 (131)
                      ..+.++ +|++|+++++ .++.+|..   ..+++|+.|+++++ .+..++..+..+++|+.|++.++......+.....+
T Consensus        49 ~~f~~l~~L~~L~L~~N-~l~~l~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l  123 (266)
T d1p9ag_          49 ATLMPYTRLTQLNLDRA-ELTKLQVD---GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL  123 (266)
T ss_dssp             GGGTTCTTCCEEECTTS-CCCEEECC---SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC
T ss_pred             HHhhccccccccccccc-cccccccc---cccccccccccccc-cccccccccccccccccccccccccceeeccccccc
Confidence            346777 8999999886 57777753   57889999999988 677777777788888888887754322222233444


Q ss_pred             CCcCeEeecCCch--hh-----------h------hcCCCCCCCCCcccCCCeeEecCcccCC
Q 045942           85 TTLKSLAIAECPA--LS-----------E------RCKPPTGEDWPKIAHIPEILLDDKMIKS  128 (131)
Q Consensus        85 ~~L~~L~i~~~~~--l~-----------~------~~~~~~~~~~~~i~~l~~l~~~~~~~~~  128 (131)
                      .++++|.+.++..  +.           .      .+.......+..+.+++.|.+.++.+++
T Consensus       124 ~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~  186 (266)
T d1p9ag_         124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT  186 (266)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             cccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcc
Confidence            4555555543320  00           0      0111122235667788888888887763

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.8e-07  Score=64.60  Aligned_cols=114  Identities=19%  Similarity=0.263  Sum_probs=63.9

Q ss_pred             CCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCC-CC
Q 045942            5 DRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPE-DM   81 (131)
Q Consensus         5 ~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~-~~   81 (131)
                      +..+.++ +|++|+++++. +..++...+ ...++|+.+++.++ .+..+|. .+..++.|++|++.++ .+..++. .+
T Consensus        98 ~~~~~~l~~L~~L~l~~n~-~~~~~~~~~-~~~~~L~~l~l~~N-~l~~i~~~~f~~~~~L~~L~l~~N-~l~~l~~~~f  173 (284)
T d1ozna_          98 PATFHGLGRLHTLHLDRCG-LQELGPGLF-RGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAF  173 (284)
T ss_dssp             TTTTTTCTTCCEEECTTSC-CCCCCTTTT-TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTT
T ss_pred             chhhcccccCCEEecCCcc-ccccccccc-chhcccchhhhccc-cccccChhHhccccchhhcccccC-cccccchhhh
Confidence            4456666 77888877654 344443221 55667777777766 5666653 3556677777777665 4555543 35


Q ss_pred             CCCCCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           82 HHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        82 ~~l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                      ..+++|+.+.+.++....     .....+..+.++..+.+.++.+.
T Consensus       174 ~~l~~L~~l~l~~N~l~~-----i~~~~f~~l~~L~~L~l~~N~i~  214 (284)
T d1ozna_         174 RGLHSLDRLLLHQNRVAH-----VHPHAFRDLGRLMTLYLFANNLS  214 (284)
T ss_dssp             TTCTTCCEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCS
T ss_pred             ccccccchhhhhhccccc-----cChhHhhhhhhcccccccccccc
Confidence            566677777766554221     11122344445555555555443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.1e-08  Score=66.10  Aligned_cols=83  Identities=16%  Similarity=0.259  Sum_probs=68.0

Q ss_pred             CCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCC-CCcccccccccccccccCcCCC--CCCCC
Q 045942            9 TRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSL-KDLEALETLVIARCPKLSSLPE--DMHHV   84 (131)
Q Consensus         9 ~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l-~~l~sL~~L~l~~c~~l~~lp~--~~~~l   84 (131)
                      ..+ +|++|+++++ .+..++ ++  ..+++|++|++++| .+..+|..+ ..+++|++|++.+| .+..++.  .+..+
T Consensus        38 ~~l~~L~~L~Ls~N-~i~~l~-~~--~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~L~~L~L~~N-~i~~~~~l~~l~~l  111 (162)
T d1a9na_          38 ATLDQFDAIDFSDN-EIRKLD-GF--PLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASL  111 (162)
T ss_dssp             GGTTCCSEEECCSS-CCCEEC-CC--CCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGC
T ss_pred             cccccCCEEECCCC-CCCccC-Cc--ccCcchhhhhcccc-cccCCCccccccccccccceeccc-cccccccccccccc
Confidence            445 8999999986 588885 46  78999999999999 688888654 56899999999986 4666654  56778


Q ss_pred             CCcCeEeecCCch
Q 045942           85 TTLKSLAIAECPA   97 (131)
Q Consensus        85 ~~L~~L~i~~~~~   97 (131)
                      ++|++|++.+|+-
T Consensus       112 ~~L~~L~l~~N~i  124 (162)
T d1a9na_         112 KSLTYLCILRNPV  124 (162)
T ss_dssp             TTCCEEECCSSGG
T ss_pred             cccchhhcCCCcc
Confidence            9999999999974

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=5.4e-08  Score=67.35  Aligned_cols=112  Identities=13%  Similarity=0.167  Sum_probs=73.3

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCC-CCCCCcccccccccccccccCcCCCCCCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALP-GSLKDLEALETLVIARCPKLSSLPEDMHHVT   85 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~   85 (131)
                      +... +|+.+++.++ .++.+|+..+ ..+++|+.|++.++ .+..+| ..+..+++|+.+.+.++....-.|..+..++
T Consensus       125 ~~~~~~L~~l~l~~N-~l~~i~~~~f-~~~~~L~~L~l~~N-~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~  201 (284)
T d1ozna_         125 FRGLAALQYLYLQDN-ALQALPDDTF-RDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG  201 (284)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             cchhcccchhhhccc-cccccChhHh-ccccchhhcccccC-cccccchhhhccccccchhhhhhccccccChhHhhhhh
Confidence            4444 7888888764 5777775443 66788888888887 566665 4566788888888877654444466778888


Q ss_pred             CcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           86 TLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        86 ~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                      +|++|++.++.--.     .....+..+..+..+.+.++++.
T Consensus       202 ~L~~L~l~~N~i~~-----~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         202 RLMTLYLFANNLSA-----LPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TCCEEECCSSCCSC-----CCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hccccccccccccc-----ccccccccccccCEEEecCCCCC
Confidence            88888887665211     11112344566777777776543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.58  E-value=1.2e-07  Score=62.60  Aligned_cols=101  Identities=12%  Similarity=0.255  Sum_probs=44.0

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLA   91 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~   91 (131)
                      +|++|+++++ .+..++. +  +.+++|+.|+++++ .+..++ .+..++.|+.|++.+|... .+ ..+..+++|+.|+
T Consensus        63 nL~~L~Ls~N-~l~~~~~-l--~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~~~~~-~~-~~~~~l~~L~~L~  134 (199)
T d2omxa2          63 NLTQINFSNN-QLTDITP-L--KNLTKLVDILMNNN-QIADIT-PLANLTNLTGLTLFNNQIT-DI-DPLKNLTNLNRLE  134 (199)
T ss_dssp             TCCEEECCSS-CCCCCGG-G--TTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECCSSCCC-CC-GGGTTCTTCSEEE
T ss_pred             CcCcCccccc-cccCccc-c--cCCccccccccccc-cccccc-ccccccccccccccccccc-cc-cccchhhhhHHhh
Confidence            4555555443 3333332 3  44455555555444 233333 2444455555555443221 11 1233445555555


Q ss_pred             ecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           92 IAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        92 i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                      +.++. +.      .........++..+.+.++.+.
T Consensus       135 l~~n~-l~------~~~~l~~~~~L~~L~l~~n~l~  163 (199)
T d2omxa2         135 LSSNT-IS------DISALSGLTSLQQLNFSSNQVT  163 (199)
T ss_dssp             CCSSC-CC------CCGGGTTCTTCSEEECCSSCCC
T ss_pred             hhhhh-hc------cccccccccccccccccccccc
Confidence            55442 10      0111334455666666665543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.56  E-value=1.6e-07  Score=61.92  Aligned_cols=80  Identities=16%  Similarity=0.301  Sum_probs=38.1

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT   86 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~   86 (131)
                      ++.+ +|++|+++++. +..++. +  ..++.|+.|+++++. ...+ ..+..+++|+.|++++|. +..++ .+..+++
T Consensus        80 l~~l~~L~~L~l~~n~-~~~~~~-l--~~l~~L~~L~l~~~~-~~~~-~~~~~l~~L~~L~l~~n~-l~~~~-~l~~~~~  151 (199)
T d2omxa2          80 LKNLTKLVDILMNNNQ-IADITP-L--ANLTNLTGLTLFNNQ-ITDI-DPLKNLTNLNRLELSSNT-ISDIS-ALSGLTS  151 (199)
T ss_dssp             GTTCTTCCEEECCSSC-CCCCGG-G--TTCTTCSEEECCSSC-CCCC-GGGTTCTTCSEEECCSSC-CCCCG-GGTTCTT
T ss_pred             ccCCcccccccccccc-cccccc-c--ccccccccccccccc-cccc-cccchhhhhHHhhhhhhh-hcccc-ccccccc
Confidence            4444 55555555442 333432 3  455555555555552 2222 234455555555555442 33333 2444455


Q ss_pred             cCeEeecCC
Q 045942           87 LKSLAIAEC   95 (131)
Q Consensus        87 L~~L~i~~~   95 (131)
                      |+.|++.+|
T Consensus       152 L~~L~l~~n  160 (199)
T d2omxa2         152 LQQLNFSSN  160 (199)
T ss_dssp             CSEEECCSS
T ss_pred             ccccccccc
Confidence            555555544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.50  E-value=7.3e-08  Score=68.49  Aligned_cols=102  Identities=18%  Similarity=0.271  Sum_probs=72.4

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT   86 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~   86 (131)
                      +..+ .++.+.+.++ .+..++. +  ..+++++.|+++++ ++..++ .+..+++|++|++++| .++.++ .+..+++
T Consensus       281 ~~~~~~l~~l~~~~n-~l~~~~~-~--~~~~~l~~L~ls~n-~l~~l~-~l~~l~~L~~L~L~~n-~l~~l~-~l~~l~~  352 (384)
T d2omza2         281 LAGLTALTNLELNEN-QLEDISP-I--SNLKNLTYLTLYFN-NISDIS-PVSSLTKLQRLFFANN-KVSDVS-SLANLTN  352 (384)
T ss_dssp             GTTCTTCSEEECCSS-CCSCCGG-G--GGCTTCSEEECCSS-CCSCCG-GGGGCTTCCEEECCSS-CCCCCG-GGGGCTT
T ss_pred             ccccccccccccccc-ccccccc-c--chhcccCeEECCCC-CCCCCc-ccccCCCCCEEECCCC-CCCCCh-hHcCCCC
Confidence            4445 7778877765 4555543 4  57788999999888 677775 3778899999999887 577766 5778889


Q ss_pred             cCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCc
Q 045942           87 LKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDK  124 (131)
Q Consensus        87 L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~  124 (131)
                      |++|++.+|. +...      ..+..+++++.+.+.++
T Consensus       353 L~~L~l~~N~-l~~l------~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         353 INWLSAGHNQ-ISDL------TPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCEEECCSSC-CCBC------GGGTTCTTCSEEECCCE
T ss_pred             CCEEECCCCc-CCCC------hhhccCCCCCEeeCCCC
Confidence            9999998774 2211      12456778888887765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.48  E-value=3.2e-07  Score=63.79  Aligned_cols=110  Identities=17%  Similarity=0.177  Sum_probs=81.7

Q ss_pred             CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCC-CCCCCC
Q 045942            7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLP-EDMHHV   84 (131)
Q Consensus         7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp-~~~~~l   84 (131)
                      .+..+ +|+.+.+.++ .+..+|..    .+++|+.|++.++......+..+..++.++.|.+++| .+..++ ..+..+
T Consensus       145 ~~~~l~~L~~l~l~~n-~l~~l~~~----~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l  218 (305)
T d1xkua_         145 AFQGMKKLSYIRIADT-NITTIPQG----LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANT  218 (305)
T ss_dssp             GGGGCTTCCEEECCSS-CCCSCCSS----CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGS
T ss_pred             ccccccccCccccccC-CccccCcc----cCCccCEEECCCCcCCCCChhHhhccccccccccccc-ccccccccccccc
Confidence            34555 7888888876 46677754    3578999999988666566667888899999999886 466664 457788


Q ss_pred             CCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccCC
Q 045942           85 TTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIKS  128 (131)
Q Consensus        85 ~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~  128 (131)
                      ++|++|++++|. +..     ....+..+++++.+.+.++.+++
T Consensus       219 ~~L~~L~L~~N~-L~~-----lp~~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         219 PHLRELHLNNNK-LVK-----VPGGLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             TTCCEEECCSSC-CSS-----CCTTTTTCSSCCEEECCSSCCCC
T ss_pred             ccceeeeccccc-ccc-----cccccccccCCCEEECCCCccCc
Confidence            999999999984 331     12345678899999999888764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.48  E-value=1.1e-07  Score=63.70  Aligned_cols=96  Identities=18%  Similarity=0.233  Sum_probs=61.0

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLA   91 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~   91 (131)
                      .++.+.+.++. +...+. +  ...++|+.|.+.+| .+...+ .++.+++|+.|++++| .++.++. +..+++|++|+
T Consensus       130 ~~~~l~~~~~~-~~~~~~-~--~~~~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~Ls~n-~l~~l~~-l~~l~~L~~L~  201 (227)
T d1h6ua2         130 NLQVLYLDLNQ-ITNISP-L--AGLTNLQYLSIGNA-QVSDLT-PLANLSKLTTLKADDN-KISDISP-LASLPNLIEVH  201 (227)
T ss_dssp             TCCEEECCSSC-CCCCGG-G--GGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEE
T ss_pred             chhhhhchhhh-hchhhh-h--cccccccccccccc-ccccch-hhcccccceecccCCC-ccCCChh-hcCCCCCCEEE
Confidence            66777776653 333322 3  46678888888877 444443 3677888888888776 5677654 66778888888


Q ss_pred             ecCCchhhhhcCCCCCCCCCcccCCCeeEec
Q 045942           92 IAECPALSERCKPPTGEDWPKIAHIPEILLD  122 (131)
Q Consensus        92 i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~  122 (131)
                      +.+|. +...      .....+++++.+.+.
T Consensus       202 Ls~N~-lt~i------~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         202 LKNNQ-ISDV------SPLANTSNLFIVTLT  225 (227)
T ss_dssp             CTTSC-CCBC------GGGTTCTTCCEEEEE
T ss_pred             CcCCc-CCCC------cccccCCCCCEEEee
Confidence            88874 4311      113455666666554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.47  E-value=2.3e-07  Score=61.63  Aligned_cols=77  Identities=14%  Similarity=0.267  Sum_probs=51.6

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLA   91 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~   91 (131)
                      +|++|++.++ .++.++ ++  ..+++|++|+++++ .+..++ .++.+++|+.|++.+| .++.+| .+..+++|+.|+
T Consensus        47 ~L~~L~l~~~-~i~~l~-~l--~~l~~L~~L~L~~n-~i~~l~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          47 SIDQIIANNS-DIKSVQ-GI--QYLPNVTKLFLNGN-KLTDIK-PLANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             TCCEEECTTS-CCCCCT-TG--GGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEE
T ss_pred             CccEEECcCC-CCCCch-hH--hhCCCCCEEeCCCc-cccCcc-ccccCccccccccccc-cccccc-cccccccccccc
Confidence            6777777765 455554 35  66777888888777 566665 3566777787877765 466665 356667777777


Q ss_pred             ecCCc
Q 045942           92 IAECP   96 (131)
Q Consensus        92 i~~~~   96 (131)
                      +.++.
T Consensus       119 l~~~~  123 (210)
T d1h6ta2         119 LEHNG  123 (210)
T ss_dssp             CTTSC
T ss_pred             ccccc
Confidence            77654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.45  E-value=3.7e-07  Score=60.65  Aligned_cols=79  Identities=20%  Similarity=0.296  Sum_probs=55.0

Q ss_pred             CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCC
Q 045942            7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVT   85 (131)
Q Consensus         7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~   85 (131)
                      ++..+ +|++|+++++ .+..++. +  ..+++|+.|++++| .+..+| .+..+++|+.|++.+|.. ..++ .+..++
T Consensus        63 ~l~~l~~L~~L~L~~n-~i~~l~~-~--~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~~~~-~~~~-~l~~l~  134 (210)
T d1h6ta2          63 GIQYLPNVTKLFLNGN-KLTDIKP-L--ANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLSLEHNGI-SDIN-GLVHLP  134 (210)
T ss_dssp             TGGGCTTCCEEECCSS-CCCCCGG-G--TTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEECTTSCC-CCCG-GGGGCT
T ss_pred             hHhhCCCCCEEeCCCc-cccCccc-c--ccCccccccccccc-cccccc-cccccccccccccccccc-cccc-cccccc
Confidence            45667 8999999886 5777764 4  68899999999988 677776 477788899998887642 2222 233344


Q ss_pred             CcCeEeec
Q 045942           86 TLKSLAIA   93 (131)
Q Consensus        86 ~L~~L~i~   93 (131)
                      .++.+++.
T Consensus       135 ~l~~l~~~  142 (210)
T d1h6ta2         135 QLESLYLG  142 (210)
T ss_dssp             TCCEEECC
T ss_pred             cccccccc
Confidence            44444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=8.2e-07  Score=56.54  Aligned_cols=105  Identities=18%  Similarity=0.175  Sum_probs=77.3

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCC-CCCCCCcCe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPED-MHHVTTLKS   89 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~   89 (131)
                      ..+.+...+ ..+..+|..+  ..+++|+.|++.+...++.++. .+..+++|+.|+++++ .+..+++. +..+++|++
T Consensus         9 ~~~~l~c~~-~~~~~~p~~l--~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           9 GSSGLRCTR-DGALDSLHHL--PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             SSSCEECCS-SCCCTTTTTS--CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCE
T ss_pred             CCCeEEecC-CCCccCcccc--cCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcccccccccccccc
Confidence            456666665 3566778777  7889999999988877999874 5888999999999886 68888654 788999999


Q ss_pred             EeecCCchhhhhcCCCCCCCCCcccCCCeeEecCccc
Q 045942           90 LAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMI  126 (131)
Q Consensus        90 L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~  126 (131)
                      |+++++.--.  .   ....+. ...+..+.+.++.+
T Consensus        85 L~Ls~N~l~~--l---~~~~~~-~~~l~~L~L~~Np~  115 (156)
T d2ifga3          85 LNLSFNALES--L---SWKTVQ-GLSLQELVLSGNPL  115 (156)
T ss_dssp             EECCSSCCSC--C---CSTTTC-SCCCCEEECCSSCC
T ss_pred             eeccCCCCcc--c---Chhhhc-cccccccccCCCcc
Confidence            9999876211  1   111122 22577888888875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2e-06  Score=57.63  Aligned_cols=83  Identities=11%  Similarity=0.146  Sum_probs=64.9

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCC-CCCCCCcCe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPED-MHHVTTLKS   89 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~   89 (131)
                      ++++|+++++ .+..+|...| ..+++|++|+++++.....++. .+..++.++++.+..+..+..++.. +..+++|++
T Consensus        30 ~l~~L~Ls~n-~i~~l~~~~f-~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          30 NAIELRFVLT-KLRVIQKGAF-SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  107 (242)
T ss_dssp             CCSEEEEESC-CCCEECTTTT-TTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCE
T ss_pred             CCCEEECcCC-cCCccChhHh-hccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccc
Confidence            8999999886 5888887543 7899999999999865555553 4667888898888777777766654 678889999


Q ss_pred             EeecCCc
Q 045942           90 LAIAECP   96 (131)
Q Consensus        90 L~i~~~~   96 (131)
                      +++.++.
T Consensus       108 l~l~~~~  114 (242)
T d1xwdc1         108 LLISNTG  114 (242)
T ss_dssp             EEEESCC
T ss_pred             cccchhh
Confidence            9998764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.28  E-value=7.6e-07  Score=63.05  Aligned_cols=77  Identities=10%  Similarity=0.235  Sum_probs=60.3

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLA   91 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~   91 (131)
                      +|++|+++++ .++.+ +++  +.+++|++|+++++ .+..+|. ++.+++|++|++.+|+ +..+++ +..+++|+.|+
T Consensus        45 ~l~~L~l~~~-~I~~l-~gl--~~L~nL~~L~Ls~N-~l~~l~~-l~~L~~L~~L~L~~n~-i~~i~~-l~~l~~L~~L~  116 (384)
T d2omza2          45 QVTTLQADRL-GIKSI-DGV--EYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLT  116 (384)
T ss_dssp             TCCEEECCSS-CCCCC-TTG--GGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEE
T ss_pred             CCCEEECCCC-CCCCc-ccc--ccCCCCCEEeCcCC-cCCCCcc-ccCCcccccccccccc-cccccc-ccccccccccc
Confidence            7889999876 57676 466  78899999999998 6888874 8889999999998875 555543 66778888888


Q ss_pred             ecCCc
Q 045942           92 IAECP   96 (131)
Q Consensus        92 i~~~~   96 (131)
                      +.++.
T Consensus       117 ~~~~~  121 (384)
T d2omza2         117 LFNNQ  121 (384)
T ss_dssp             CCSSC
T ss_pred             ccccc
Confidence            76544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.20  E-value=2.3e-09  Score=71.42  Aligned_cols=84  Identities=14%  Similarity=0.202  Sum_probs=48.7

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCC----------------------CCCccccc
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGS----------------------LKDLEALE   64 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~----------------------l~~l~sL~   64 (131)
                      +..+ +|++|+++++ .++.++ ++  ..+++|+.|++++| .+..+|..                      +..+++|+
T Consensus        44 l~~L~~L~~L~Ls~n-~I~~i~-~l--~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~  118 (198)
T d1m9la_          44 LSTLKACKHLALSTN-NIEKIS-SL--SGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLR  118 (198)
T ss_dssp             HHHTTTCCEEECSEE-EESCCC-CH--HHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSS
T ss_pred             HhcccccceeECccc-CCCCcc-cc--cCCccccChhhccc-cccccccccccccccccccccccccccccccccccccc
Confidence            3445 6777777654 355554 34  55666777777666 45555422                      23345566


Q ss_pred             ccccccccccCcCCC--CCCCCCCcCeEeecCCch
Q 045942           65 TLVIARCPKLSSLPE--DMHHVTTLKSLAIAECPA   97 (131)
Q Consensus        65 ~L~l~~c~~l~~lp~--~~~~l~~L~~L~i~~~~~   97 (131)
                      .|++++| .+..++.  .+..+++|+.|++.+++-
T Consensus       119 ~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         119 VLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccc-hhccccccccccCCCccceeecCCCcc
Confidence            6666554 3444432  356677888888887763

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.10  E-value=2.6e-06  Score=59.33  Aligned_cols=54  Identities=26%  Similarity=0.378  Sum_probs=40.6

Q ss_pred             CCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEeecCCc
Q 045942           35 CTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAIAECP   96 (131)
Q Consensus        35 ~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~~~   96 (131)
                      .+++|++|++++| .+..+|..   +++|+.|++.+| .++.+|..   +++|++|++++|+
T Consensus       282 ~~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~L~~N-~L~~l~~~---~~~L~~L~L~~N~  335 (353)
T d1jl5a_         282 LPPSLEELNVSNN-KLIELPAL---PPRLERLIASFN-HLAEVPEL---PQNLKQLHVEYNP  335 (353)
T ss_dssp             CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC
T ss_pred             cCCCCCEEECCCC-ccCccccc---cCCCCEEECCCC-cCCccccc---cCCCCEEECcCCc
Confidence            4578889999888 67788753   567888888765 57788764   3478888888876

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=4e-06  Score=56.09  Aligned_cols=106  Identities=18%  Similarity=0.260  Sum_probs=73.3

Q ss_pred             ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCC-CCCCCCcCe
Q 045942           12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPED-MHHVTTLKS   89 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~   89 (131)
                      ..+.++.++ ..++.+|..+    .+++++|+++++ .+..+|. .+..+++|++|+++++.....++.. +..++.+++
T Consensus         9 ~~~~i~c~~-~~l~~iP~~l----~~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~   82 (242)
T d1xwdc1           9 SNRVFLCQE-SKVTEIPSDL----PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE   82 (242)
T ss_dssp             CSSEEEEES-CSCSSCCSCS----CSCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCE
T ss_pred             cCCEEEEeC-CCCCCcCCCC----CCCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeecccccccccccc
Confidence            445666655 3578899765    268999999998 6888886 4788999999999998777666553 567889999


Q ss_pred             EeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           90 LAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        90 L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                      +.+..+..+....    ...+..+..++.+.+.++.+.
T Consensus        83 l~~~~~n~l~~~~----~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          83 IRIEKANNLLYIN----PEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             EEEECCTTCCEEC----TTSEECCTTCCEEEEESCCCC
T ss_pred             ccccccccccccc----cccccccccccccccchhhhc
Confidence            9887665443211    122344556666666655443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.06  E-value=6.7e-06  Score=54.70  Aligned_cols=105  Identities=16%  Similarity=0.240  Sum_probs=61.6

Q ss_pred             CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942            8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT   86 (131)
Q Consensus         8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~   86 (131)
                      +..+ +|+.+.+.++.. ..++. +  ...+.+..+.++++ .+...+ .+..+++|++|.+.+|. +...+ .+.++++
T Consensus       103 l~~l~~L~~l~l~~~~~-~~~~~-~--~~~~~~~~l~~~~~-~~~~~~-~~~~~~~L~~L~l~~n~-~~~~~-~l~~l~~  174 (227)
T d1h6ua2         103 IAGLQSIKTLDLTSTQI-TDVTP-L--AGLSNLQVLYLDLN-QITNIS-PLAGLTNLQYLSIGNAQ-VSDLT-PLANLSK  174 (227)
T ss_dssp             GTTCTTCCEEECTTSCC-CCCGG-G--TTCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECCSSC-CCCCG-GGTTCTT
T ss_pred             ccccccccccccccccc-cccch-h--ccccchhhhhchhh-hhchhh-hhccccccccccccccc-cccch-hhccccc
Confidence            4555 777777776643 33322 3  45677777777766 333332 35567778888776653 33332 2566778


Q ss_pred             cCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942           87 LKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK  127 (131)
Q Consensus        87 L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  127 (131)
                      |++|++.+|. +..      -.....+.+++.+.+.++.+.
T Consensus       175 L~~L~Ls~n~-l~~------l~~l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         175 LTTLKADDNK-ISD------ISPLASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             CCEEECCSSC-CCC------CGGGGGCTTCCEEECTTSCCC
T ss_pred             ceecccCCCc-cCC------ChhhcCCCCCCEEECcCCcCC
Confidence            8888887763 321      112345566777777776654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=3.4e-07  Score=63.56  Aligned_cols=83  Identities=17%  Similarity=0.196  Sum_probs=40.5

Q ss_pred             ccceEeecCcCCCcc-cchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCc--CCCCCCCCCCcC
Q 045942           12 HLRRVVIGEITQFLE-LPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSS--LPEDMHHVTTLK   88 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~-lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~--lp~~~~~l~~L~   88 (131)
                      +|++|++++|.-... +..-+  ..+++|+.|.+.+|.--...+..+..+++|++|++++|..++.  +..-...+++|+
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~--~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGIL--SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHH--TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCEEECCCCccCHHHHHHHH--HhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            677777766532211 22222  5566666666666632222223445556666666666654432  111112334555


Q ss_pred             eEeecCCc
Q 045942           89 SLAIAECP   96 (131)
Q Consensus        89 ~L~i~~~~   96 (131)
                      +|++.+|.
T Consensus       125 ~L~ls~c~  132 (284)
T d2astb2         125 ELNLSWCF  132 (284)
T ss_dssp             EEECCCCT
T ss_pred             cccccccc
Confidence            55555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.6e-06  Score=60.01  Aligned_cols=60  Identities=20%  Similarity=0.234  Sum_probs=26.9

Q ss_pred             CCCcCEEeecCCCCccc-CCCCCCCcccccccccccccccCcC-CCCCCCCCCcCeEeecCC
Q 045942           36 TDTLQSLIIVDCPNFMA-LPGSLKDLEALETLVIARCPKLSSL-PEDMHHVTTLKSLAIAEC   95 (131)
Q Consensus        36 l~~L~~L~l~~~~~l~~-lp~~l~~l~sL~~L~l~~c~~l~~l-p~~~~~l~~L~~L~i~~~   95 (131)
                      +++|+.|++++|..+.. ....+..+++|++|++.+|+.+..- ...+.++++|+.|++.+|
T Consensus       174 ~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            34555555555544331 1223444555555555555443321 112334455555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.88  E-value=4.5e-05  Score=52.78  Aligned_cols=32  Identities=28%  Similarity=0.441  Sum_probs=16.4

Q ss_pred             cccccccccccccCcCCCCCCCCCCcCeEeecCC
Q 045942           62 ALETLVIARCPKLSSLPEDMHHVTTLKSLAIAEC   95 (131)
Q Consensus        62 sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~~   95 (131)
                      .|++|++.++ .+..+|. .+++++|++|++.++
T Consensus        99 ~L~~L~L~~n-~l~~lp~-~~~l~~L~~L~l~~~  130 (353)
T d1jl5a_          99 LLEYLGVSNN-QLEKLPE-LQNSSFLKIIDVDNN  130 (353)
T ss_dssp             TCCEEECCSS-CCSSCCC-CTTCTTCCEEECCSS
T ss_pred             cccccccccc-ccccccc-hhhhccceeeccccc
Confidence            3555555543 3445553 345556666665544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.87  E-value=7.8e-08  Score=63.75  Aligned_cols=79  Identities=19%  Similarity=0.200  Sum_probs=59.6

Q ss_pred             ccceEeecC-cCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeE
Q 045942           12 HLRRVVIGE-ITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSL   90 (131)
Q Consensus        12 ~L~~L~i~~-c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L   90 (131)
                      .++.+.+.+ .+.++.++..+  ..+++|+.|+++++ .+..++ .+..+++|+.|++++| .++.+|.....+++|++|
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl--~~L~~L~~L~Ls~n-~I~~i~-~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L   98 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATL--STLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEEL   98 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHH--HHTTTCCEEECSEE-EESCCC-CHHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEE
T ss_pred             ccceeeeecccCchhhhhhHH--hcccccceeECccc-CCCCcc-cccCCccccChhhccc-cccccccccccccccccc
Confidence            456666654 45677788778  88999999999988 688885 6888999999999886 477776543334467777


Q ss_pred             eecCC
Q 045942           91 AIAEC   95 (131)
Q Consensus        91 ~i~~~   95 (131)
                      ++.++
T Consensus        99 ~l~~N  103 (198)
T d1m9la_          99 WISYN  103 (198)
T ss_dssp             ECSEE
T ss_pred             ccccc
Confidence            77655

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00015  Score=45.78  Aligned_cols=61  Identities=18%  Similarity=0.154  Sum_probs=44.8

Q ss_pred             cCCCCcCEEeecCCCCcccCC---CCCCCcccccccccccccccCcCCC--CCCCCCCcCeEeecCCch
Q 045942           34 CCTDTLQSLIIVDCPNFMALP---GSLKDLEALETLVIARCPKLSSLPE--DMHHVTTLKSLAIAECPA   97 (131)
Q Consensus        34 ~~l~~L~~L~l~~~~~l~~lp---~~l~~l~sL~~L~l~~c~~l~~lp~--~~~~l~~L~~L~i~~~~~   97 (131)
                      ..+++|++|+++++ .+..++   ..+..+++|+.|+++++ .++.+++  .+.. ..|++|++.++|-
T Consensus        62 ~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~-~~L~~L~L~~Npl  127 (162)
T d1koha1          62 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKG-LKLEELWLDGNSL  127 (162)
T ss_dssp             HHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTT-CCCSSCCCTTSTT
T ss_pred             HhCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhc-cccceeecCCCCc
Confidence            46789999999998 676664   33556899999999885 5676654  1233 3788999988774

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=3.3e-05  Score=55.13  Aligned_cols=12  Identities=25%  Similarity=0.426  Sum_probs=6.0

Q ss_pred             CCCcCEEeecCC
Q 045942           36 TDTLQSLIIVDC   47 (131)
Q Consensus        36 l~~L~~L~l~~~   47 (131)
                      ++++++|++.+|
T Consensus        26 l~~l~~L~L~~~   37 (460)
T d1z7xw1          26 LQQCQVVRLDDC   37 (460)
T ss_dssp             HTTCSEEEEESS
T ss_pred             CCCCCEEEeCCC
Confidence            344555555555

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0018  Score=45.78  Aligned_cols=80  Identities=15%  Similarity=0.254  Sum_probs=56.4

Q ss_pred             ccceEeecCcCCCc-----ccchhhhccCCCCcCEEeecCCCCcc-----cCCCCCC-CcccccccccccccccCc----
Q 045942           12 HLRRVVIGEITQFL-----ELPQWLLQCCTDTLQSLIIVDCPNFM-----ALPGSLK-DLEALETLVIARCPKLSS----   76 (131)
Q Consensus        12 ~L~~L~i~~c~~l~-----~lp~~~~~~~l~~L~~L~l~~~~~l~-----~lp~~l~-~l~sL~~L~l~~c~~l~~----   76 (131)
                      ++++|++.+|. +.     .+...+  ...++|+.|+++++ .+.     .+.+.+. ..++|++|++.+|. ++.    
T Consensus        28 ~l~~L~L~~~~-i~~~~~~~l~~~L--~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-it~~~~~  102 (460)
T d1z7xw1          28 QCQVVRLDDCG-LTEARCKDISSAL--RVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCG  102 (460)
T ss_dssp             TCSEEEEESSC-CCHHHHHHHHHHH--HTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHH
T ss_pred             CCCEEEeCCCC-CCHHHHHHHHHHH--hcCCCCCEEECcCC-cCChHHHHHHHHHHhcCCCCCCEEECCCCC-ccccccc
Confidence            78899999984 43     233445  67899999999988 443     2223332 23579999999885 432    


Q ss_pred             -CCCCCCCCCCcCeEeecCCc
Q 045942           77 -LPEDMHHVTTLKSLAIAECP   96 (131)
Q Consensus        77 -lp~~~~~l~~L~~L~i~~~~   96 (131)
                       ++..+...++|++|++.++.
T Consensus       103 ~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1         103 VLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHHHTTSCTTCCEEECCSSB
T ss_pred             cccchhhcccccccccccccc
Confidence             44556777899999999876

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.29  E-value=0.0011  Score=41.57  Aligned_cols=37  Identities=14%  Similarity=-0.007  Sum_probs=16.0

Q ss_pred             CCCCcCEEeecCCCCcccCCC-CCCCccccccccccccc
Q 045942           35 CTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCP   72 (131)
Q Consensus        35 ~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~   72 (131)
                      .+++|+.|+++++ .+..+++ .......|+.|++.++|
T Consensus        89 ~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          89 KAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             hCCcccccccccC-ccccchhhhhhhccccceeecCCCC
Confidence            4455555555554 3444432 01112334555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.85  E-value=0.0022  Score=40.34  Aligned_cols=80  Identities=13%  Similarity=0.192  Sum_probs=53.3

Q ss_pred             ccceEeecCcCCCcc-----cchhhhccCCCCcCEEeecCCCCccc-----CCCCCCCcccccccccccccccCc-----
Q 045942           12 HLRRVVIGEITQFLE-----LPQWLLQCCTDTLQSLIIVDCPNFMA-----LPGSLKDLEALETLVIARCPKLSS-----   76 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~-----lp~~~~~~~l~~L~~L~l~~~~~l~~-----lp~~l~~l~sL~~L~l~~c~~l~~-----   76 (131)
                      +|++|+++++..++.     +-..+  ...++|+.|++++| .+..     +-+.+...++|++|++++|. +..     
T Consensus        16 ~L~~L~L~~~~~i~~~~~~~l~~~L--~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~g~~~   91 (167)
T d1pgva_          16 DLKEVNINNMKRVSKERIRSLIEAA--CNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF-LTPELLAR   91 (167)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHH--TTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHH
T ss_pred             CCcEEEeCCCCCCCHHHHHHHHHHH--hhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehhh-cchHHHHH
Confidence            799999987654432     22334  56688999999998 3432     22334456889999998874 332     


Q ss_pred             CCCCCCCCCCcCeEeecCC
Q 045942           77 LPEDMHHVTTLKSLAIAEC   95 (131)
Q Consensus        77 lp~~~~~l~~L~~L~i~~~   95 (131)
                      +-..+..-++|++|++.++
T Consensus        92 l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhCCcCCEEECCCC
Confidence            2334555678999999765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=92.52  E-value=0.0027  Score=43.98  Aligned_cols=38  Identities=29%  Similarity=0.366  Sum_probs=19.3

Q ss_pred             cCCCCcCEEeecCCCCcc-----cCCCCCCCccccccccccccc
Q 045942           34 CCTDTLQSLIIVDCPNFM-----ALPGSLKDLEALETLVIARCP   72 (131)
Q Consensus        34 ~~l~~L~~L~l~~~~~l~-----~lp~~l~~l~sL~~L~l~~c~   72 (131)
                      ...++|+.|+++++. +.     .+...+...++|++|.+++|.
T Consensus       212 ~~~~~L~~L~Ls~N~-i~~~g~~~L~~~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         212 AYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             GGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             cchhhhccccccccc-ccccccccccccccccccchhhhhhcCc
Confidence            344556666666552 21     122334455666666666653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=92.46  E-value=0.012  Score=40.52  Aligned_cols=62  Identities=18%  Similarity=0.231  Sum_probs=41.8

Q ss_pred             cCCCCcCEEeecCCCCccc------CCCCCCCcccccccccccccc----cCcCCCCCCCCCCcCeEeecCCc
Q 045942           34 CCTDTLQSLIIVDCPNFMA------LPGSLKDLEALETLVIARCPK----LSSLPEDMHHVTTLKSLAIAECP   96 (131)
Q Consensus        34 ~~l~~L~~L~l~~~~~l~~------lp~~l~~l~sL~~L~l~~c~~----l~~lp~~~~~l~~L~~L~i~~~~   96 (131)
                      ...++|+.|++++| .+..      +...+...++|+.|++++|..    ...+...+...++|++|++.+|.
T Consensus       183 ~~~~~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         183 QSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             HHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             hhhhhhcccccccc-cccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCc
Confidence            45678999999887 3332      234466778899999987652    12233445566788888888886

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=90.37  E-value=0.024  Score=35.08  Aligned_cols=81  Identities=21%  Similarity=0.176  Sum_probs=50.6

Q ss_pred             ccceEeecCcCCCcc-----cchhhhccCCCCcCEEeecCCCCccc-----CCCCCCCcccccccccccccc----cCcC
Q 045942           12 HLRRVVIGEITQFLE-----LPQWLLQCCTDTLQSLIIVDCPNFMA-----LPGSLKDLEALETLVIARCPK----LSSL   77 (131)
Q Consensus        12 ~L~~L~i~~c~~l~~-----lp~~~~~~~l~~L~~L~l~~~~~l~~-----lp~~l~~l~sL~~L~l~~c~~----l~~l   77 (131)
                      +|++|.++++..++.     +-..+  ...+.|+.|++++| .+..     +-+.+...++++.+++.+|..    ...+
T Consensus        18 ~L~~L~L~~~~~i~~~~~~~l~~al--~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          18 DLEEVNLNNIMNIPVPTLKACAEAL--KTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHH--TTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             CCcEEEcCCCCCCCHHHHHHHHHHH--hcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            788999987554432     22334  56788999999998 4432     212345567888888877642    1223


Q ss_pred             CCCCCCCCCcCeEeecCC
Q 045942           78 PEDMHHVTTLKSLAIAEC   95 (131)
Q Consensus        78 p~~~~~l~~L~~L~i~~~   95 (131)
                      ...+...++|+.+++..+
T Consensus        95 ~~~l~~~~~L~~l~L~l~  112 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQ  112 (166)
T ss_dssp             HHGGGGCSSCCEEECCCC
T ss_pred             HHHHHhCccccEEeeccC
Confidence            344455568888777644

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.91  E-value=0.0057  Score=38.37  Aligned_cols=63  Identities=14%  Similarity=0.097  Sum_probs=42.0

Q ss_pred             cCCCCcCEEeecCCCCccc-----CCCCCCCccccccccccccccc----CcCCCCCCCCCCcCeEeecCCc
Q 045942           34 CCTDTLQSLIIVDCPNFMA-----LPGSLKDLEALETLVIARCPKL----SSLPEDMHHVTTLKSLAIAECP   96 (131)
Q Consensus        34 ~~l~~L~~L~l~~~~~l~~-----lp~~l~~l~sL~~L~l~~c~~l----~~lp~~~~~l~~L~~L~i~~~~   96 (131)
                      ..-++|+.|+++++..+..     +-..+...++|++|++++|..-    ..+...+...++|++|++.+|.
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~   83 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF   83 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh
Confidence            4558899999997644432     1134556788999999987421    1222233445689999999986