Citrus Sinensis ID: 045954

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70------
Protein Sequence
MANKPKVGKKLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQVFARYKKKPMITSWEFHTVGRLVLPGELAKHTVF
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccEEHHHHHHHHHHHHHHHHccccEEcHHHHHHHHHHHccHHHHHHHHc
Coil and Loop (DISEMBL)
MANKPKVGKKLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQVFARykkkpmitswefhtvgrlvlpgelakhtvf
Flexible Loop (DISEMBL)
mankpkvgkklskkatssnkekkcakksiktynIYIFKVLKQVFARYKKKPMITSWEFHTVGRLVLPGELAKHTVF
Low Complexity Region (SEG)
MANKPKVGKKLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQVFARYKKKPMITSWEFHTVGRLVLPGELAKHTVF
Disordered region (IsUnstruct)
***************************SIKTYNIYIFKVLKQVFARYKKKPMITSWEFHTVGRLVLPGEL******
Disordered Region (DISOPRED)
**********************************YIFKVLKQVFARYKKKPMITSWEFHTVGRLVLPGELAKHTVF
Disordered Region (DISEMBL)
*************************KKSIKTYNIYIFKVLKQVFARYKKKPMITSWEFHTVGRLVLPGELAKHTVF
Disordered Region (DISPRO)
***************************SIKTYNIYIFKVLKQVFARYKKKPMITSWEFHTVGRLVLPGELAKHTVF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANKPKVGKKLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQVFARYKKKPMITSWEFHTVGRLVLPGELAKHTVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	76	2.2.26 [Sep-21-2011]
O49118	145	Histone H2B OS=Capsicum a	N/A	no	0.947	0.496	0.504	3e-13
O65819	137	Histone H2B.3 (Fragment)	N/A	no	0.947	0.525	0.475	3e-13
O23629	150	Histone H2B.6 OS=Arabidop	yes	no	0.947	0.48	0.480	4e-12
O22582	147	Histone H2B OS=Gossypium	N/A	no	0.947	0.489	0.476	5e-12
P40283	150	Histone H2B.11 OS=Arabido	yes	no	0.947	0.48	0.480	5e-12
Q9LZT0	145	Histone H2B.7 OS=Arabidop	yes	no	0.947	0.496	0.480	5e-12
Q9SI96	151	Histone H2B.3 OS=Arabidop	no	no	0.947	0.476	0.457	7e-12
Q9ZUS0	138	Histone H2B.4 OS=Arabidop	no	no	0.934	0.514	0.480	1e-11
Q1S9I9	148	Probable histone H2B.1 OS	N/A	no	0.947	0.486	0.447	1e-11
Q1SWQ1	148	Probable histone H2B.2 OS	N/A	no	0.947	0.486	0.447	2e-11

>sp|O49118|H2B_CAPAN Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 55/103 (53%), Gaps = 31/103 (30%)

Query: 4   KPKVGKKLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQV-------------------- 43
           KPK GKKL K A   +K+KK AKKSI+TY IYIFKVLKQV                    
Sbjct: 30  KPKAGKKLPKDAGRPDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFIND 89

Query: 44  -----------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                       ARY KKP ITS E  T  RLVLPGELAKH V
Sbjct: 90  IFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAV 132

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
Capsicum annuum (taxid: 4072)

>sp|O65819|H2B3_SOLLC Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 56/103 (54%), Gaps = 31/103 (30%)

Query: 4   KPKVGKKLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQV-------------------- 43
           KPK GKKL K A + +K+KK +KK+++TY IYIFKVLKQV                    
Sbjct: 22  KPKAGKKLPKDAAAGDKKKKRSKKAVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIND 81

Query: 44  -----------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                       ARY KKP ITS E  T  RLVLPGELAKH V
Sbjct: 82  IFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAV 124

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Solanum lycopersicum (taxid: 4081)

>sp|O23629|H2B6_ARATH Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 SV=3

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 55/104 (52%), Gaps = 32/104 (30%)

Query: 4   KPKVGKKLSKKA-TSSNKEKKCAKKSIKTYNIYIFKVLKQV------------------- 43
           KPK GKKL K+A    +K+KK  KKS++TY IYIFKVLKQV                   
Sbjct: 34  KPKAGKKLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIN 93

Query: 44  ------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                        ARY KKP ITS E  T  RLVLPGELAKH V
Sbjct: 94  DIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAV 137

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Arabidopsis thaliana (taxid: 3702)

>sp|O22582|H2B_GOSHI Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 56/105 (53%), Gaps = 33/105 (31%)

Query: 4   KPKVGKKLSKK--ATSSNKEKKCAKKSIKTYNIYIFKVLKQV------------------ 43
           KPK GKKL K+  A + +K+KK  KKS++TY IYIFKVLKQV                  
Sbjct: 30  KPKAGKKLPKEGGAAAGDKKKKRVKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFI 89

Query: 44  -------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                         ARY KKP ITS E  T  RLVLPGELAKH V
Sbjct: 90  NDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAV 134

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Gossypium hirsutum (taxid: 3635)

>sp|P40283|H2B11_ARATH Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 55/104 (52%), Gaps = 32/104 (30%)

Query: 4   KPKVGKKLSKKA-TSSNKEKKCAKKSIKTYNIYIFKVLKQV------------------- 43
           KPK GKKL K+A    +K+KK  KKS++TY IYIFKVLKQV                   
Sbjct: 34  KPKAGKKLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIN 93

Query: 44  ------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                        ARY KKP ITS E  T  RLVLPGELAKH V
Sbjct: 94  DIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAV 137

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZT0|H2B7_ARATH Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 55/104 (52%), Gaps = 32/104 (30%)

Query: 4   KPKVGKKLSKKA-TSSNKEKKCAKKSIKTYNIYIFKVLKQV------------------- 43
           KPK GKKL K+A    +K+KK  KKS++TY IYIFKVLKQV                   
Sbjct: 29  KPKAGKKLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIN 88

Query: 44  ------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                        ARY KKP ITS E  T  RLVLPGELAKH V
Sbjct: 89  DIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAV 132

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI96|H2B3_ARATH Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720 PE=1 SV=3

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 52/105 (49%), Gaps = 33/105 (31%)

Query: 4   KPKVGKKLSKKATSSNKEKKCAKK--SIKTYNIYIFKVLKQV------------------ 43
           KPK GKKL K+A +   EKK  +   S +TY IYIFKVLKQV                  
Sbjct: 34  KPKAGKKLPKEAVTGGVEKKKKRVKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFI 93

Query: 44  -------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                         ARY KKP ITS E  T  RLVLPGELAKH V
Sbjct: 94  NDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAV 138

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUS0|H2B4_ARATH Histone H2B.4 OS=Arabidopsis thaliana GN=At2g37470 PE=1 SV=3

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 54/102 (52%), Gaps = 31/102 (30%)

Query: 5   PKVGKKLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQV--------------------- 43
           PK  KK+SK A  S K+KK +KKS++TY IYIFKVLKQV                     
Sbjct: 25  PKAEKKISKDAGGSEKKKKKSKKSVETYKIYIFKVLKQVHPDVGISGKAMGIMNSFINDI 84

Query: 44  ----------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                      ARY KKP ITS E  T  RLVLPGELAKH V
Sbjct: 85  FEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAV 126

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 52/105 (49%), Gaps = 33/105 (31%)

Query: 4   KPKVGKKLSKKATSSNKEKKCAKKS--IKTYNIYIFKVLKQV------------------ 43
           KPK GKKL K+  S+  EKK  +    ++TY IYIFKVLKQV                  
Sbjct: 31  KPKAGKKLPKEGGSAAGEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFI 90

Query: 44  -------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                         ARY KKP ITS E  T  RLVLPGELAKH V
Sbjct: 91  NDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAV 135

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Medicago truncatula (taxid: 3880)

>sp|Q1SWQ1|H2B2_MEDTR Probable histone H2B.2 OS=Medicago truncatula PE=3 SV=3

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 52/105 (49%), Gaps = 33/105 (31%)

Query: 4   KPKVGKKLSKKATSSNKEKKCAKKS--IKTYNIYIFKVLKQV------------------ 43
           KPK GKKL K+  S+  EKK  +    ++TY IYIFKVLKQV                  
Sbjct: 31  KPKAGKKLPKEGGSAAGEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFI 90

Query: 44  -------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                         ARY KKP ITS E  T  RLVLPGELAKH V
Sbjct: 91  NDIFEKLTQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHDV 135

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Medicago truncatula (taxid: 3880)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
357472693	147	Histone H2B [Medicago truncatula] gi|355	0.947	0.489	0.461	6e-12
82400146	146	histone H2B-like protein [Solanum tubero	0.947	0.493	0.504	6e-12
7387727	145	RecName: Full=Histone H2B; AltName: Full	0.947	0.496	0.504	1e-11
75278464	137	RecName: Full=Histone H2B.3; AltName: Fu	0.947	0.525	0.475	1e-11
147832884	145	hypothetical protein VITISV_016378 [Viti	0.947	0.496	0.466	7e-11
146336941	137	putative histone [Medicago truncatula]	0.973	0.540	0.466	1e-10
388495940	137	unknown [Medicago truncatula]	0.973	0.540	0.466	1e-10
225435054	146	PREDICTED: histone H2B-like [Vitis vinif	0.947	0.493	0.480	1e-10
449450686	152	PREDICTED: probable histone H2B.1-like [	0.947	0.473	0.476	1e-10
297793547	145	hypothetical protein ARALYDRAFT_496128 [	0.947	0.496	0.490	1e-10

>gi|357472693|ref|XP_003606631.1| Histone H2B [Medicago truncatula] gi|355507686|gb|AES88828.1| Histone H2B [Medicago truncatula]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 55/104 (52%), Gaps = 32/104 (30%)

Query: 4   KPKVGKKLSKKATSS-NKEKKCAKKSIKTYNIYIFKVLKQV------------------- 43
           KPK GKKL K+  S+   +KK +KK+++TY IYIFKVLKQV                   
Sbjct: 31  KPKAGKKLPKEGGSAAGDKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIN 90

Query: 44  ------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                        ARY KKP ITS E  T  RLVLPGELAKH V
Sbjct: 91  DIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAV 134

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|82400146|gb|ABB72812.1| histone H2B-like protein [Solanum tuberosum]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 55/103 (53%), Gaps = 31/103 (30%)

Query: 4   KPKVGKKLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQV-------------------- 43
           KPK GKKL K A S  K+KK AKKS++TY IYIFKVLKQV                    
Sbjct: 31  KPKAGKKLPKDAASGEKKKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIND 90

Query: 44  -----------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                       ARY KKP ITS E  T  RLVLPGELAKH V
Sbjct: 91  IFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAV 133

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7387727|sp|O49118.3|H2B_CAPAN RecName: Full=Histone H2B; AltName: Full=CaH2B gi|2746719|gb|AAB94923.1| histone H2B [Capsicum annuum]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 55/103 (53%), Gaps = 31/103 (30%)

Query: 4   KPKVGKKLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQV-------------------- 43
           KPK GKKL K A   +K+KK AKKSI+TY IYIFKVLKQV                    
Sbjct: 30  KPKAGKKLPKDAGRPDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFIND 89

Query: 44  -----------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                       ARY KKP ITS E  T  RLVLPGELAKH V
Sbjct: 90  IFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAV 132

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75278464|sp|O65819.1|H2B3_SOLLC RecName: Full=Histone H2B.3; AltName: Full=LeH2B-3 gi|3021485|emb|CAA12231.1| histone H2B-3 [Solanum lycopersicum]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 56/103 (54%), Gaps = 31/103 (30%)

Query: 4   KPKVGKKLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQV-------------------- 43
           KPK GKKL K A + +K+KK +KK+++TY IYIFKVLKQV                    
Sbjct: 22  KPKAGKKLPKDAAAGDKKKKRSKKAVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIND 81

Query: 44  -----------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                       ARY KKP ITS E  T  RLVLPGELAKH V
Sbjct: 82  IFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAV 124

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147832884|emb|CAN72813.1| hypothetical protein VITISV_016378 [Vitis vinifera]

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 56/103 (54%), Gaps = 31/103 (30%)

Query: 4   KPKVGKKLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQV-------------------- 43
           KP+  KKL K A+S++K+KK  KK+++TY IYIFKVLKQV                    
Sbjct: 30  KPRAEKKLPKDASSTDKKKKRTKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIND 89

Query: 44  -----------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                       ARY KKP ITS E  T  RLVLPGELAKH V
Sbjct: 90  IFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAV 132

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146336941|gb|ABQ23584.1| putative histone [Medicago truncatula]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 57/105 (54%), Gaps = 31/105 (29%)

Query: 2   ANKPKVGKKLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQV------------------ 43
           A K K  KK+ K+A+S++K+KK  KKS++TY IYIFKVLKQV                  
Sbjct: 20  AEKTKAEKKIPKEASSADKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFI 79

Query: 44  -------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                         ARY KKP ITS E  T  RLVLPGELAKH V
Sbjct: 80  NDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAV 124

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495940|gb|AFK36036.1| unknown [Medicago truncatula]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 57/105 (54%), Gaps = 31/105 (29%)

Query: 2   ANKPKVGKKLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQV------------------ 43
           A K K  KK+ K+A+S++K+KK  KKS++TY IYIFKVLKQV                  
Sbjct: 20  AEKTKAEKKIPKEASSTDKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFI 79

Query: 44  -------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                         ARY KKP ITS E  T  RLVLPGELAKH V
Sbjct: 80  NDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAV 124

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435054|ref|XP_002284357.1| PREDICTED: histone H2B-like [Vitis vinifera]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 57/104 (54%), Gaps = 32/104 (30%)

Query: 4   KPKVGKKLSKKA-TSSNKEKKCAKKSIKTYNIYIFKVLKQV------------------- 43
           KPK GKKL K+A  +++K+KK  KKS++TY IYIFKVLKQV                   
Sbjct: 30  KPKAGKKLPKEAGAATDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIN 89

Query: 44  ------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                        ARY KKP ITS E  T  RLVLPGELAKH V
Sbjct: 90  DIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAV 133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450686|ref|XP_004143093.1| PREDICTED: probable histone H2B.1-like [Cucumis sativus] gi|449508145|ref|XP_004163232.1| PREDICTED: probable histone H2B.1-like [Cucumis sativus]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 56/105 (53%), Gaps = 33/105 (31%)

Query: 4   KPKVGKKLSKK--ATSSNKEKKCAKKSIKTYNIYIFKVLKQV------------------ 43
           KPK GKKL K+  A + +K+KK  KKS++TY IYIFKVLKQV                  
Sbjct: 35  KPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFI 94

Query: 44  -------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                         ARY KKP ITS E  T  RLVLPGELAKH V
Sbjct: 95  NDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAV 139

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793547|ref|XP_002864658.1| hypothetical protein ARALYDRAFT_496128 [Arabidopsis lyrata subsp. lyrata] gi|297310493|gb|EFH40917.1| hypothetical protein ARALYDRAFT_496128 [Arabidopsis lyrata subsp. lyrata]

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/104 (49%), Positives = 55/104 (52%), Gaps = 32/104 (30%)

Query: 4   KPKVGKKLSKKA-TSSNKEKKCAKKSIKTYNIYIFKVLKQV------------------- 43
           KPK GKKL K+A    +K+KK  KKSI+TY IYIFKVLKQV                   
Sbjct: 31  KPKAGKKLPKEAGAGGDKKKKMKKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIN 90

Query: 44  ------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                        ARY KKP ITS E  T  RLVLPGELAKH V
Sbjct: 91  DIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAV 134

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
TAIR|locus:2077152	145	HTB11 [Arabidopsis thaliana (t	0.526	0.275	0.658	1e-18
TAIR|locus:2077182	150	HTB9 [Arabidopsis thaliana (ta	0.526	0.266	0.658	1e-18
TAIR|locus:2172691	145	HTB2 "histone B2" [Arabidopsis	0.526	0.275	0.634	2.7e-18
TAIR|locus:2074959	126	AT3G09480 [Arabidopsis thalian	0.407	0.246	0.741	5.2e-16
UNIPROTKB|E1BC18	126	LOC617043 "Histone H2B" [Bos t	0.407	0.246	0.612	5.8e-12
UNIPROTKB|F1NCM0	133	LOC769973 "Histone H2B" [Gallu	0.407	0.233	0.612	7.4e-12
UNIPROTKB|F1NDN1	131	LOC769973 "Histone H2B" [Gallu	0.407	0.236	0.612	7.4e-12
UNIPROTKB|F1NF31	131	LOC769973 "Histone H2B" [Gallu	0.407	0.236	0.612	7.4e-12
UNIPROTKB|P0C1H3	126	H2B-I "Histone H2B 1/2/3/4/6"	0.407	0.246	0.612	7.4e-12
UNIPROTKB|P0C1H4	126	H2B-V "Histone H2B 5" [Gallus	0.407	0.246	0.612	7.4e-12

TAIR|locus:2077152 HTB11 [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
 Identities = 27/41 (65%), Positives = 32/41 (78%)

Query:     4 KPKVGKKLSKKA-TSSNKEKKCAKKSIKTYNIYIFKVLKQV 43
             KPK GKKL K+A    +K+KK  KKS++TY IYIFKVLKQV
Sbjct:    29 KPKAGKKLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQV 69

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2077182 HTB9 [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
 Identities = 27/41 (65%), Positives = 32/41 (78%)

Query:     4 KPKVGKKLSKKA-TSSNKEKKCAKKSIKTYNIYIFKVLKQV 43
             KPK GKKL K+A    +K+KK  KKS++TY IYIFKVLKQV
Sbjct:    34 KPKAGKKLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQV 74

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

TAIR|locus:2172691 HTB2 "histone B2" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
 Identities = 26/41 (63%), Positives = 34/41 (82%)

Query:     4 KPKVGKKLSKK-ATSSNKEKKCAKKSIKTYNIYIFKVLKQV 43
             KPK GKKL K+ A + +K+KK +KK+++TY IYIFKVLKQV
Sbjct:    29 KPKAGKKLPKEPAGAGDKKKKRSKKNVETYKIYIFKVLKQV 69

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008283 "cell proliferation" evidence=RCA

TAIR|locus:2074959 AT3G09480 [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
 Identities = 23/31 (74%), Positives = 23/31 (74%)

Query:    45 ARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
             ARY KKP ITS E  T  RLVLPGELAKH V
Sbjct:    83 ARYNKKPTITSREIQTAVRLVLPGELAKHAV 113

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006334 "nucleosome assembly" evidence=IEA

UNIPROTKB|E1BC18 LOC617043 "Histone H2B" [Bos taurus (taxid:9913)]

 Score = 89 (36.4 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query:    45 ARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
             A Y K+  ITS E  T  RL+LPGELAKH V
Sbjct:    82 AHYNKRSTITSREIQTTLRLLLPGELAKHAV 112

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000786 "nucleosome" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

UNIPROTKB|F1NCM0 LOC769973 "Histone H2B" [Gallus gallus (taxid:9031)]

 Score = 90 (36.7 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query:    45 ARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
             A Y K+  ITS E  T  RL+LPGELAKH V
Sbjct:    89 AHYNKRSTITSREIQTAVRLLLPGELAKHAV 119

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1NDN1 LOC769973 "Histone H2B" [Gallus gallus (taxid:9031)]

 Score = 90 (36.7 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query:    45 ARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
             A Y K+  ITS E  T  RL+LPGELAKH V
Sbjct:    87 AHYNKRSTITSREIQTAVRLLLPGELAKHAV 117

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1NF31 LOC769973 "Histone H2B" [Gallus gallus (taxid:9031)]

 Score = 90 (36.7 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query:    45 ARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
             A Y K+  ITS E  T  RL+LPGELAKH V
Sbjct:    88 AHYNKRSTITSREIQTAVRLLLPGELAKHAV 118

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|P0C1H3 H2B-I "Histone H2B 1/2/3/4/6" [Gallus gallus (taxid:9031)]

 Score = 90 (36.7 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query:    45 ARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
             A Y K+  ITS E  T  RL+LPGELAKH V
Sbjct:    82 AHYNKRSTITSREIQTAVRLLLPGELAKHAV 112

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IEA

GO:0000786 "nucleosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|P0C1H4 H2B-V "Histone H2B 5" [Gallus gallus (taxid:9031)]

 Score = 90 (36.7 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query:    45 ARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
             A Y K+  ITS E  T  RL+LPGELAKH V
Sbjct:    82 AHYNKRSTITSREIQTAVRLLLPGELAKHAV 112

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	76
smart00427	97	smart00427, H2B, Histone H2B	2e-10
PLN00158	116	PLN00158, PLN00158, histone H2B; Provisional	6e-08
PTZ00463	117	PTZ00463, PTZ00463, histone H2B; Provisional	2e-04

>gnl|CDD|197718 smart00427, H2B, Histone H2B

 Score = 51.4 bits (123), Expect = 2e-10
 Identities = 34/85 (40%), Positives = 39/85 (45%), Gaps = 31/85 (36%)

Query: 22 KKCAKKSIKTYNIYIFKVLKQVF-------------------------------ARYKKK 50
          KK  KK  +TY IYI+KVLKQV                                ARY KK
Sbjct: 1  KKRVKKRKETYAIYIYKVLKQVHPDTGISSRAMSIMNSFVNDIFERIAAEASKLARYNKK 60

Query: 51 PMITSWEFHTVGRLVLPGELAKHTV 75
            ++S E  T  RL+LPGELAKH V
Sbjct: 61 STLSSREIQTAVRLILPGELAKHAV 85

Length = 97

>gnl|CDD|215081 PLN00158, PLN00158, histone H2B; Provisional

 Score = 45.5 bits (107), Expect = 6e-08
 Identities = 38/101 (37%), Positives = 45/101 (44%), Gaps = 31/101 (30%)

Query: 6   KVGKKLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQV---------------------- 43
           K   K   K  +   +KK +K   +TY IYI+KVLKQV                      
Sbjct: 3   KTPSKKPAKKAAKGAKKKGSKSKTETYKIYIYKVLKQVHPDTGISSKAMSIMNSFINDIF 62

Query: 44  ---------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                     ARY KKP +TS E  T  RL+LPGELAKH V
Sbjct: 63  EKIATEAGKLARYNKKPTVTSREIQTAVRLILPGELAKHAV 103

Length = 116

>gnl|CDD|185642 PTZ00463, PTZ00463, histone H2B; Provisional

 Score = 36.7 bits (84), Expect = 2e-04
 Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 31/97 (31%)

Query: 10  KLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQV-------------------------- 43
           K  K AT  + +KK  K    +Y +YIFKVLKQV                          
Sbjct: 8   KAKKAATGPDGKKKRKKSRYDSYGLYIFKVLKQVHPDTGISRKSMNIMNSFLVDTFEKIA 67

Query: 44  -----FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                  +Y ++  ++S E  T  RLVLPGELAKH V
Sbjct: 68  TEASRLCKYTRRDTLSSREIQTAIRLVLPGELAKHAV 104

Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	76
PLN00158	116	histone H2B; Provisional	99.96
PTZ00463	117	histone H2B; Provisional	99.96
smart00427	89	H2B Histone H2B.	99.93
KOG1744	127	consensus Histone H2B [Chromatin structure and dyn	99.9
PF00125	75	Histone: Core histone H2A/H2B/H3/H4 histone h2a si	98.28
smart00803	65	TAF TATA box binding protein associated factor. TA	91.45
cd00074	115	H2A Histone 2A; H2A is a subunit of the nucleosome	89.22
cd07979	117	TAF9 TATA Binding Protein (TBP) Associated Factor	88.18
PLN00035	103	histone H4; Provisional	88.16
cd00076	85	H4 Histone H4, one of the four histones, along wit	87.52
PTZ00015	102	histone H4; Provisional	87.23
cd07981	72	TAF12 TATA Binding Protein (TBP) Associated Factor	87.13
PF02969	66	TAF: TATA box binding protein associated factor (T	86.49
COG2036	91	HHT1 Histones H3 and H4 [Chromatin structure and d	86.31
PF00808	65	CBFD_NFYB_HMF: Histone-like transcription factor (	83.27

>PLN00158 histone H2B; Provisional

Probab=99.96  E-value=9e-31  Score=178.74  Aligned_cols=73  Identities=59%  Similarity=0.846  Sum_probs=59.6

Q ss_pred             CCCCCcccccccccccCCcccccccccCcchhHHHHHHHHHHH-------------------------------HHhhcC
Q 045954            1 MANKPKVGKKLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQV-------------------------------FARYKK   49 (76)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~kkrkkkr~esy~~YiykVLKqV-------------------------------La~~nk   49 (76)
                      |+|.|.  +++..+... ..+++++++|+|+|++|||||||||                               |++||+
T Consensus         1 ~~~~~~--~k~~~~~~~-~~~kk~~~kr~esy~~YI~kVLKQVhPd~gIS~kaM~ImnSfvnDiferIA~EAs~La~~nk   77 (116)
T PLN00158          1 MAKTPS--KKPAKKAAK-GAKKKGSKSKTETYKIYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKIATEAGKLARYNK   77 (116)
T ss_pred             CCCCcc--hhhhhhccc-cccccccccccccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            566643  333222222 2356677788999999999999999                               999999


Q ss_pred             CCCcchHHHHHHHHhhcchhhhhhccC
Q 045954           50 KPMITSWEFHTVGRLVLPGELAKHTVF   76 (76)
Q Consensus        50 r~TitsrEIqtAvrLlLPGELaKhAvs   76 (76)
                      ++|||+|||||||||||||||+|||||
T Consensus        78 r~TltsrEIqtAvrLvLpgELaKhAvs  104 (116)
T PLN00158         78 KPTVTSREIQTAVRLILPGELAKHAVS  104 (116)
T ss_pred             CCcCCHHHHHHHHHHhccHHHHHHHHH
Confidence            999999999999999999999999985

>PTZ00463 histone H2B; Provisional

Probab=99.96  E-value=3.6e-30  Score=176.04  Aligned_cols=56  Identities=52%  Similarity=0.808  Sum_probs=52.6

Q ss_pred             cccccccCcchhHHHHHHHHHHH-------------------------------HHhhcCCCCcchHHHHHHHHhhcchh
Q 045954           21 EKKCAKKSIKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSWEFHTVGRLVLPGE   69 (76)
Q Consensus        21 ~kkrkkkr~esy~~YiykVLKqV-------------------------------La~~nkr~TitsrEIqtAvrLlLPGE   69 (76)
                      +++++++|.|||++|||||||||                               |++||+++|||+|||||||||+||||
T Consensus        19 ~kk~~~kr~esy~~YI~KVLKqVhPd~gIS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvrLlLpGE   98 (117)
T PTZ00463         19 KKKRKKSRYDSYGLYIFKVLKQVHPDTGISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIRLVLPGE   98 (117)
T ss_pred             cccccccccchHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHhhcccHH
Confidence            35667778999999999999999                               99999999999999999999999999


Q ss_pred             hhhhccC
Q 045954           70 LAKHTVF   76 (76)
Q Consensus        70 LaKhAvs   76 (76)
                      |+|||||
T Consensus        99 LaKhAvs  105 (117)
T PTZ00463         99 LAKHAVS  105 (117)
T ss_pred             HHHhhhh
Confidence            9999986

>smart00427 H2B Histone H2B

Probab=99.93  E-value=6.1e-27  Score=153.67  Aligned_cols=47  Identities=64%  Similarity=0.966  Sum_probs=45.9

Q ss_pred             chhHHHHHHHHHHH-------------------------------HHhhcCCCCcchHHHHHHHHhhcchhhhhhccC
Q 045954           30 KTYNIYIFKVLKQV-------------------------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTVF   76 (76)
Q Consensus        30 esy~~YiykVLKqV-------------------------------La~~nkr~TitsrEIqtAvrLlLPGELaKhAvs   76 (76)
                      |||++|||||||||                               |++||+++|||+|||||||||+|||||+||||+
T Consensus         1 esy~~Yi~kvLKqVhpd~giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvrl~LpgeLakhAvs   78 (89)
T smart00427        1 ETYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVRLILPGELAKHAVS   78 (89)
T ss_pred             CcHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHHccHHHHHHHHH
Confidence            79999999999999                               999999999999999999999999999999986

>KOG1744 consensus Histone H2B [Chromatin structure and dynamics]

Probab=99.90  E-value=1.4e-24  Score=150.14  Aligned_cols=58  Identities=48%  Similarity=0.745  Sum_probs=54.3

Q ss_pred             cccccccccCcchhHHHHHHHHHHH-------------------------------HHhhcCCCCcchHHHHHHHHhhcc
Q 045954           19 NKEKKCAKKSIKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSWEFHTVGRLVLP   67 (76)
Q Consensus        19 ~~~kkrkkkr~esy~~YiykVLKqV-------------------------------La~~nkr~TitsrEIqtAvrLlLP   67 (76)
                      +.+|++..++.|+|+.|||||||||                               |++||+|+|||||||||||||+||
T Consensus        26 k~gk~~~~~~~e~~s~yv~kvlk~Vhpd~gis~~a~~vmnsf~ndife~iA~ea~rla~y~krstisSreiqta~rLllP  105 (127)
T KOG1744|consen   26 KAGKKRSTRRKESYSEYVYKVLKQVHPDLGISSKAMGVMNSFVNDIFERIASEAGRLAHYNKRSTISSREIQTAVRLLLP  105 (127)
T ss_pred             cccccCcccccCceeeehhhhhhcccCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCcccHHHHHHHHHHhCc
Confidence            3357778899999999999999999                               999999999999999999999999


Q ss_pred             hhhhhhccC
Q 045954           68 GELAKHTVF   76 (76)
Q Consensus        68 GELaKhAvs   76 (76)
                      |||+|||+|
T Consensus       106 gel~khA~s  114 (127)
T KOG1744|consen  106 GELAKHAVS  114 (127)
T ss_pred             hHHhhhhhc
Confidence            999999986

>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]

Probab=98.28  E-value=7.8e-07  Score=53.73  Aligned_cols=37  Identities=19%  Similarity=0.262  Sum_probs=32.0

Q ss_pred             CcchhHHHHHHHHHHH-----------------------------------HHhhcCCCCcchHHHHHHHHh
Q 045954           28 SIKTYNIYIFKVLKQV-----------------------------------FARYKKKPMITSWEFHTVGRL   64 (76)
Q Consensus        28 r~esy~~YiykVLKqV-----------------------------------La~~nkr~TitsrEIqtAvrL   64 (76)
                      +...+..||.||+++|                                   ++.+++|.||+++|||.|+++
T Consensus         3 ~~~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~   74 (75)
T PF00125_consen    3 RRLIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRI   74 (75)
T ss_dssp             SHSSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHH
T ss_pred             ccccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhc
Confidence            4566778888888877                                   889999999999999999986

Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....

>smart00803 TAF TATA box binding protein associated factor

Probab=91.45  E-value=0.34  Score=29.60  Aligned_cols=30  Identities=20%  Similarity=0.350  Sum_probs=22.6

Q ss_pred             HHHHHHHHHH--HHhhcCCCCcchHHHHHHHH
Q 045954           34 IYIFKVLKQV--FARYKKKPMITSWEFHTVGR   63 (76)
Q Consensus        34 ~YiykVLKqV--La~~nkr~TitsrEIqtAvr   63 (76)
                      .|+..|+++.  ++++.+|.|+|..||.-|++
T Consensus        34 ~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk   65 (65)
T smart00803       34 YRIKEIVQEALKFMRHSKRTTLTTSDIDSALR   65 (65)
T ss_pred             HHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence            3444444444  99999999999999988764

TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.

>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome

Probab=89.22  E-value=0.72  Score=31.31  Aligned_cols=35  Identities=29%  Similarity=0.269  Sum_probs=29.6

Q ss_pred             chhHHHHHHHHHHH----------HHhhcCCCCcchHHHHHHHHh
Q 045954           30 KTYNIYIFKVLKQV----------FARYKKKPMITSWEFHTVGRL   64 (76)
Q Consensus        30 esy~~YiykVLKqV----------La~~nkr~TitsrEIqtAvrL   64 (76)
                      ++-.+|+--||.-+          .++.+++.+||+++|+.|++-
T Consensus        41 ~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi~n   85 (115)
T cd00074          41 AGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAVRN   85 (115)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHhc
Confidence            44578888888776          788999999999999999973

The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.

>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=88.18  E-value=1  Score=30.26  Aligned_cols=33  Identities=15%  Similarity=0.151  Sum_probs=26.3

Q ss_pred             HHHHHHHHH--HHhhcCCCCcchHHHHHHHHhhcc
Q 045954           35 YIFKVLKQV--FARYKKKPMITSWEFHTVGRLVLP   67 (76)
Q Consensus        35 YiykVLKqV--La~~nkr~TitsrEIqtAvrLlLP   67 (76)
                      |+..||++.  ++.+.+|.||+..||.-|+...+.
T Consensus        34 y~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~   68 (117)
T cd07979          34 YTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVD   68 (117)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence            444444444  999999999999999999988765

The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi

>PLN00035 histone H4; Provisional

Probab=88.16  E-value=1.2  Score=30.08  Aligned_cols=21  Identities=5%  Similarity=0.137  Sum_probs=19.3

Q ss_pred             HHhhcCCCCcchHHHHHHHHh
Q 045954           44 FARYKKKPMITSWEFHTVGRL   64 (76)
Q Consensus        44 La~~nkr~TitsrEIqtAvrL   64 (76)
                      ++.+.+|.||+..||--|++.
T Consensus        73 ya~HA~RKTV~~~DV~~Alkr   93 (103)
T PLN00035         73 YTEHARRKTVTAMDVVYALKR   93 (103)
T ss_pred             HHHhcCCCcCcHHHHHHHHHH
Confidence            889999999999999988874

>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution

Probab=87.52  E-value=1.4  Score=28.52  Aligned_cols=32  Identities=13%  Similarity=0.263  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHH--HHhhcCCCCcchHHHHHHHHh
Q 045954           33 NIYIFKVLKQV--FARYKKKPMITSWEFHTVGRL   64 (76)
Q Consensus        33 ~~YiykVLKqV--La~~nkr~TitsrEIqtAvrL   64 (76)
                      ..|+-.|+++.  ++.+.+|.|||..||--|++.
T Consensus        44 ~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr   77 (85)
T cd00076          44 KSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKR   77 (85)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence            33444444443  889999999999999888763

>PTZ00015 histone H4; Provisional

Probab=87.23  E-value=1.4  Score=29.54  Aligned_cols=21  Identities=10%  Similarity=0.295  Sum_probs=19.0

Q ss_pred             HHhhcCCCCcchHHHHHHHHh
Q 045954           44 FARYKKKPMITSWEFHTVGRL   64 (76)
Q Consensus        44 La~~nkr~TitsrEIqtAvrL   64 (76)
                      ++.|.+|.|||..||--|++.
T Consensus        74 ~aeHA~RKTVt~~DV~~AlKr   94 (102)
T PTZ00015         74 YTEYARRKTVTAMDVVYALKR   94 (102)
T ss_pred             HHHhcCCCcccHHHHHHHHHh
Confidence            899999999999999888764

>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=87.13  E-value=1.6  Score=26.78  Aligned_cols=32  Identities=9%  Similarity=0.130  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHH--HHhhcCCCCcchHHHHHHHHh
Q 045954           33 NIYIFKVLKQV--FARYKKKPMITSWEFHTVGRL   64 (76)
Q Consensus        33 ~~YiykVLKqV--La~~nkr~TitsrEIqtAvrL   64 (76)
                      ..|+-.|++..  ||.+.++.||..+|||-++.-
T Consensus        33 e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r   66 (72)
T cd07981          33 DDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLER   66 (72)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence            34555555555  999999999999999988763

The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind

>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex

Probab=86.49  E-value=0.96  Score=28.07  Aligned_cols=20  Identities=25%  Similarity=0.366  Sum_probs=16.1

Q ss_pred             HHhhcCCCCcchHHHHHHHH
Q 045954           44 FARYKKKPMITSWEFHTVGR   63 (76)
Q Consensus        44 La~~nkr~TitsrEIqtAvr   63 (76)
                      ++++.+|.+||..||..|.|
T Consensus        47 fm~hskR~~Lt~~Di~~ALr   66 (66)
T PF02969_consen   47 FMRHSKRTKLTTDDINSALR   66 (66)
T ss_dssp             HHHHTT-SSB-HHHHHHHH-
T ss_pred             HHHHhCCCCCCHHHHHHHhC
Confidence            89999999999999999875

TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.

>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]

Probab=86.31  E-value=1.8  Score=28.51  Aligned_cols=25  Identities=8%  Similarity=0.024  Sum_probs=22.7

Q ss_pred             HHhhcCCCCcchHHHHHHHHhhcch
Q 045954           44 FARYKKKPMITSWEFHTVGRLVLPG   68 (76)
Q Consensus        44 La~~nkr~TitsrEIqtAvrLlLPG   68 (76)
                      +|.+.+|.||+..||+-|++.+-+.
T Consensus        63 ~A~ha~RKTV~~~DI~la~~~~~~~   87 (91)
T COG2036          63 LAEHAKRKTVKAEDIKLALKRLGRR   87 (91)
T ss_pred             HHHHcCCCeecHHHHHHHHHHhccc
Confidence            8999999999999999999987654

>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin

Probab=83.27  E-value=2.6  Score=24.69  Aligned_cols=30  Identities=20%  Similarity=0.176  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHH--HHhhcCCCCcchHHHHHHH
Q 045954           33 NIYIFKVLKQV--FARYKKKPMITSWEFHTVG   62 (76)
Q Consensus        33 ~~YiykVLKqV--La~~nkr~TitsrEIqtAv   62 (76)
                      ..||.-+..+.  .+..++|.||+.+||.+||
T Consensus        34 e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av   65 (65)
T PF00808_consen   34 EEFIQYLAKEANEIAQRDKRKTITYEDVAKAV   65 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence            34555555554  7788999999999999986

The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	76
2f8n_H	123	2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a Nuc		2e-07
3c9k_B	125	Model Of Histone Octamer Tubular Crystals Length =		2e-07
3c1b_D	125	The Effect Of H3 K79 Dimethylation And H4 K20 Trime		4e-07
1s32_D	122	Molecular Recognition Of The Nucleosomal 'supergroo		5e-07
1f66_D	126	2.6 A Crystal Structure Of A Nucleosome Core Partic		5e-07
1p34_D	125	Crystallographic Studies Of Nucleosome Core Particl		6e-07
1kx3_D	125	X-Ray Structure Of The Nucleosome Core Particle, Nc		6e-07
3a6n_D	129	The Nucleosome Containing A Testis-Specific Histone		6e-07
3an2_D	129	The Structure Of The Centromeric Nucleosome Contain		7e-07
1zla_D	125	X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus L		8e-07
2cv5_D	126	Crystal Structure Of Human Nucleosome Core Particle		8e-07
1eqz_B	126	X-Ray Structure Of The Nucleosome Core Particle At		1e-06
2hio_B	125	Histone Octamer (Chicken), Chromosomal Protein Leng		1e-06
1id3_D	130	Crystal Structure Of The Yeast Nucleosome Core Part		1e-06
1u35_D	126	Crystal Structure Of The Nucleosome Core Particle C		3e-06
2pyo_D	122	Drosophila Nucleosome Core Length = 122		3e-06
1hio_B	90	Histone Octamer (Chicken), Chromosomal Protein, Alp		3e-06
2xql_B	90	Fitting Of The H2a-H2b Histones In The Electron Mic		4e-06
1aoi_D	99	Complex Between Nucleosome Core Particle (H3,H4,H2a		4e-06
3kwq_D	93	Structural Characterization Of H3k56q Nucleosomes A		5e-06
2nqb_D	123	Drosophila Nucleosome Structure Length = 123		1e-05
2jss_A	192	Nmr Structure Of Chaperone Chz1 Complexed With Hist		4e-05

>pdb|2F8N|H Chain H, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a Nucleosomes Length = 123

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 48/110 (43%), Gaps = 36/110 (32%)
Query: 1   MANKPKVGKKLSKKATSSNKEKKCAKKSIKT----YNIYIFKVLKQV------------- 43
           MA      KK SKKA +   +KK  KK  KT    Y IY++KVLKQV             
Sbjct: 1   MAKSAPAPKKGSKKAVTKT-QKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSI 59
Query: 44  ------------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                              A Y K+  ITS E  T  RL+LPGELAKH V
Sbjct: 60  MNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV 109

>pdb|3C9K|B Chain B, Model Of Histone Octamer Tubular Crystals Length = 125

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 51/107 (47%), Gaps = 35/107 (32%)
Query: 2   ANKPKVGKK--LSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQV---------------- 43
           A  PK G K  ++K     +K++K A+K  ++Y+IY++KVLKQV                
Sbjct: 7   APAPKKGSKKAVTKTQKKGDKKRKRARK--ESYSIYVYKVLKQVHPDTGISSKAMSIMNS 64
Query: 44  ---------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                           A Y K+  ITS E  T  RL+LPGELAKH V
Sbjct: 65  FVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV 111

>pdb|3C1B|D Chain D, The Effect Of H3 K79 Dimethylation And H4 K20 Trimethylation On Nucleosome And Chromatin Structure Length = 125

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 46/104 (44%), Gaps = 36/104 (34%)
Query: 7   VGKKLSKKATSSNKEKKCAKKSIKT----YNIYIFKVLKQV------------------- 43
             KK SKKA +   +KK  KK  KT    Y IY++KVLKQV                   
Sbjct: 9   AAKKGSKKAVTKT-QKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVN 67
Query: 44  ------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                        A Y K+  ITS E  T  RL+LPGELAKH V
Sbjct: 68  DVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV 111

>pdb|1S32|D Chain D, Molecular Recognition Of The Nucleosomal 'supergroove' Length = 122

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 46/102 (45%), Gaps = 36/102 (35%)
Query: 9   KKLSKKATSSNKEKKCAKKSIKT----YNIYIFKVLKQV--------------------- 43
           KK SKKA +   +KK  KK  KT    Y IY++KVLKQV                     
Sbjct: 8   KKGSKKAVTKT-QKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDV 66
Query: 44  ----------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                      A Y K+  ITS E  T  RL+LPGELAKH V
Sbjct: 67  FERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV 108

>pdb|1F66|D Chain D, 2.6 A Crystal Structure Of A Nucleosome Core Particle Containing The Variant Histone H2a.Z Length = 126

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 46/102 (45%), Gaps = 36/102 (35%)
Query: 9   KKLSKKATSSNKEKKCAKKSIKT----YNIYIFKVLKQV--------------------- 43
           KK SKKA +   +KK  KK  KT    Y IY++KVLKQV                     
Sbjct: 12  KKGSKKAVTKT-QKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDV 70
Query: 44  ----------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                      A Y K+  ITS E  T  RL+LPGELAKH V
Sbjct: 71  FERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV 112

>pdb|1P34|D Chain D, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 125

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 44/105 (41%), Gaps = 31/105 (29%)
Query: 2   ANKPKVGKKLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQV------------------ 43
           A  PK G K +   T     KK  K   ++Y IY++KVLKQV                  
Sbjct: 7   APAPKKGSKKAVTKTQKKDGKKRRKSRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFV 66
Query: 44  -------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                         A Y K+  ITS E  T  RL+LPGELAKH V
Sbjct: 67  NDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV 111

>pdb|1KX3|D Chain D, X-Ray Structure Of The Nucleosome Core Particle, Ncp146, At 2.0 A Resolution Length = 125

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 46/102 (45%), Gaps = 36/102 (35%)
Query: 9   KKLSKKATSSNKEKKCAKKSIKT----YNIYIFKVLKQV--------------------- 43
           KK SKKA +   +KK  KK  KT    Y IY++KVLKQV                     
Sbjct: 11  KKGSKKAVTKT-QKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDV 69
Query: 44  ----------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                      A Y K+  ITS E  T  RL+LPGELAKH V
Sbjct: 70  FERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV 111

>pdb|3A6N|D Chain D, The Nucleosome Containing A Testis-Specific Histone Variant, Human H3t Length = 129

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 48/101 (47%), Gaps = 34/101 (33%)
Query: 9   KKLSKKATS--SNKEKKCAKKSIK-TYNIYIFKVLKQV---------------------- 43
           KK SKKA +    K+ K  K+S K +Y+IY++KVLKQV                      
Sbjct: 15  KKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIF 74
Query: 44  ---------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                     A Y K+  ITS E  T  RL+LPGELAKH V
Sbjct: 75  ERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV 115

>pdb|3AN2|D Chain D, The Structure Of The Centromeric Nucleosome Containing Cenp-A Length = 129

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 48/101 (47%), Gaps = 34/101 (33%)
Query: 9   KKLSKKATS--SNKEKKCAKKSIK-TYNIYIFKVLKQV---------------------- 43
           KK SKKA +    K+ K  K+S K +Y+IY++KVLKQV                      
Sbjct: 15  KKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAXGIXNSFVNDIF 74
Query: 44  ---------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                     A Y K+  ITS E  T  RL+LPGELAKH V
Sbjct: 75  ERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV 115

>pdb|1ZLA|D Chain D, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana Peptide Bound To The Nucleosomal Core Length = 125

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 47/103 (45%), Gaps = 34/103 (33%)
Query: 7   VGKKLSKKATS--SNKEKKCAKKSIK-TYNIYIFKVLKQV-------------------- 43
             KK SKKA +    K+ K  +KS K +Y IY++KVLKQV                    
Sbjct: 9   AAKKGSKKAVTKTQKKDGKKRRKSRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVND 68
Query: 44  -----------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                       A Y K+  ITS E  T  RL+LPGELAKH V
Sbjct: 69  VFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV 111

>pdb|2CV5|D Chain D, Crystal Structure Of Human Nucleosome Core Particle Length = 126

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 48/101 (47%), Gaps = 34/101 (33%)
Query: 9   KKLSKKATS--SNKEKKCAKKSIK-TYNIYIFKVLKQV---------------------- 43
           KK SKKA +    K+ K  K+S K +Y++Y++KVLKQV                      
Sbjct: 12  KKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIF 71
Query: 44  ---------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                     A Y K+  ITS E  T  RL+LPGELAKH V
Sbjct: 72  ERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV 112

>pdb|1EQZ|B Chain B, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A Resolution Length = 126

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 46/105 (43%), Gaps = 31/105 (29%)
Query: 2   ANKPKVGKKLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQV------------------ 43
           A  PK G K +   T    +KK  K   ++Y+IY++KVLKQV                  
Sbjct: 8   APAPKKGSKKAVTKTQKKGDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFV 67
Query: 44  -------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                         A Y K+  ITS E  T  RL+LPGELAKH V
Sbjct: 68  NDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV 112

>pdb|2HIO|B Chain B, Histone Octamer (Chicken), Chromosomal Protein Length = 125

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 46/105 (43%), Gaps = 31/105 (29%)
Query: 2   ANKPKVGKKLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQV------------------ 43
           A  PK G K +   T    +KK  K   ++Y+IY++KVLKQV                  
Sbjct: 7   APAPKKGSKKAVTKTQKKGDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFV 66
Query: 44  -------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                         A Y K+  ITS E  T  RL+LPGELAKH V
Sbjct: 67  NDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV 111

>pdb|1ID3|D Chain D, Crystal Structure Of The Yeast Nucleosome Core Particle Reveals Fundamental Differences In Inter-Nucleosome Interactions Length = 130

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 45/102 (44%), Gaps = 31/102 (30%)
Query: 5   PKVGKKLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQV--------------------- 43
           P   K  +KK ++S   KK +K   +TY+ YI+KVLKQ                      
Sbjct: 13  PAEKKPAAKKTSTSVDGKKRSKVRKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDI 72
Query: 44  ----------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                      A Y KK  I++ E  T  RL+LPGELAKH V
Sbjct: 73  FERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAV 114

>pdb|1U35|D Chain D, Crystal Structure Of The Nucleosome Core Particle Containing The Histone Domain Of Macroh2a Length = 126

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 31/77 (40%)
Query: 30  KTYNIYIFKVLKQV-------------------------------FARYKKKPMITSWEF 58
           ++Y+IY++KVLKQV                                A Y K+  ITS E 
Sbjct: 36  ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREV 95
Query: 59  HTVGRLVLPGELAKHTV 75
            T  RL+LPGELAKH V
Sbjct: 96  QTAVRLLLPGELAKHAV 112

>pdb|2PYO|D Chain D, Drosophila Nucleosome Core Length = 122

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 31/77 (40%)
Query: 30  KTYNIYIFKVLKQV-------------------------------FARYKKKPMITSWEF 58
           ++Y IYI+KVLKQV                                A Y K+  ITS E 
Sbjct: 32  ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREI 91
Query: 59  HTVGRLVLPGELAKHTV 75
            T  RL+LPGELAKH V
Sbjct: 92  QTAVRLLLPGELAKHAV 108

>pdb|1HIO|B Chain B, Histone Octamer (Chicken), Chromosomal Protein, Alpha Carbons Only Length = 90

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 31/76 (40%)
Query: 31 TYNIYIFKVLKQV-------------------------------FARYKKKPMITSWEFH 59
          +Y+IY++KVLKQV                                A Y K+  ITS E  
Sbjct: 1  SYSIYVYKVLKQVHPDTGISSKAMGSMNSFVNDIFERIAGLASRLAHYNKRSTITSREIQ 60
Query: 60 TVGRLVLPGELAKHTV 75
          T  RL+LPGELAKH V
Sbjct: 61 TAVRLLLPGELAKHAV 76

>pdb|2XQL|B Chain B, Fitting Of The H2a-H2b Histones In The Electron Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5). Length = 90

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 31/76 (40%)
Query: 31 TYNIYIFKVLKQV-------------------------------FARYKKKPMITSWEFH 59
          +Y+IY++KVLKQV                                A Y K+  ITS E  
Sbjct: 1  SYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQ 60
Query: 60 TVGRLVLPGELAKHTV 75
          T  RL+LPGELAKH V
Sbjct: 61 TAVRLLLPGELAKHAV 76

>pdb|1AOI|D Chain D, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b) And 146 Bp Long Dna Fragment Length = 99

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 34/77 (44%), Gaps = 31/77 (40%)
Query: 30 KTYNIYIFKVLKQV-------------------------------FARYKKKPMITSWEF 58
          ++Y IY++KVLKQV                                A Y K+  ITS E 
Sbjct: 9  ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 68
Query: 59 HTVGRLVLPGELAKHTV 75
           T  RL+LPGELAKH V
Sbjct: 69 QTAVRLLLPGELAKHAV 85

>pdb|3KWQ|D Chain D, Structural Characterization Of H3k56q Nucleosomes And Nucleo Arrays Length = 93

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 34/77 (44%), Gaps = 31/77 (40%)
Query: 30 KTYNIYIFKVLKQV-------------------------------FARYKKKPMITSWEF 58
          ++Y IY++KVLKQV                                A Y K+  ITS E 
Sbjct: 3  ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 62
Query: 59 HTVGRLVLPGELAKHTV 75
           T  RL+LPGELAKH V
Sbjct: 63 QTAVRLLLPGELAKHAV 79

>pdb|2NQB|D Chain D, Drosophila Nucleosome Structure Length = 123

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 33/77 (42%), Gaps = 31/77 (40%)
Query: 30  KTYNIYIFKVLKQV-------------------------------FARYKKKPMITSWEF 58
           ++Y IYI+ VLKQV                                A Y K+  ITS E 
Sbjct: 33  ESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREI 92
Query: 59  HTVGRLVLPGELAKHTV 75
            T  RL+LPGELAKH V
Sbjct: 93  QTAVRLLLPGELAKHAV 109

>pdb|2JSS|A Chain A, Nmr Structure Of Chaperone Chz1 Complexed With Histone H2a.Z-H2b Length = 192

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 18 SNKEKKCAKKSIKTYNIYIFKVLKQV------FARYKKKPMITSWEFHTVGRLVLPGELA 71
          ++ +   ++KS+   N ++  + +++       A Y KK  I++ E  T  RL+LPGELA
Sbjct: 16 THPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELA 75
Query: 72 KHTV 75
          KH V
Sbjct: 76 KHAV 79
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	76
2nqb_D	123	Histone H2B; nucleosome, NCP, chromatin, structura	1e-05
1tzy_B	126	Histone H2B; histone-fold, tetramer-dimer-dimer, D	5e-05

>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D* Length = 123

 Score = 38.9 bits (90), Expect = 1e-05
 Identities = 36/106 (33%), Positives = 43/106 (40%), Gaps = 32/106 (30%)

Query: 2   ANKPKVGKKLSKKATSSNKE-KKCAKKSIKTYNIYIFKVLKQV----------------- 43
               K  KK  K   +  K  KK  +K  ++Y IYI+ VLKQV                 
Sbjct: 4   KTSGKAAKKAGKAQKNITKTDKKKKRKRKESYAIYIYTVLKQVHPDTGISSKAMSIMNSF 63

Query: 44  --------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                          A Y K+  ITS E  T  RL+LPGELAKH V
Sbjct: 64  VNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV 109

>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ... Length = 126

 Score = 37.5 bits (86), Expect = 5e-05
 Identities = 37/105 (35%), Positives = 46/105 (43%), Gaps = 31/105 (29%)

Query: 2   ANKPKVGKKLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQV------------------ 43
           A  PK G K +   T    +KK  K   ++Y+IY++KVLKQV                  
Sbjct: 8   APAPKKGSKKAVTKTQKKGDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFV 67

Query: 44  -------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
                         A Y K+  ITS E  T  RL+LPGELAKH V
Sbjct: 68  NDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	76
1tzy_B	126	Histone H2B; histone-fold, tetramer-dimer-dimer, D	99.96
2nqb_D	123	Histone H2B; nucleosome, NCP, chromatin, structura	99.96
2jss_A	192	Chimera of histone H2B.1 and histone H2A.Z; histon	99.82
3b0c_W	76	CENP-W, centromere protein W; histone fold, DNA bi	97.81
1b67_A	68	Protein (histone HMFA); DNA binding protein; 1.48A	96.15
1f1e_A	154	Histone fold protein; archaeal histone protein, DN	95.78
1tzy_D	103	Histone H4-VI; histone-fold, tetramer-dimer-dimer,	94.96
2yfw_B	103	Histone H4, H4; cell cycle, kinetochore, centromer	94.83
1ku5_A	70	HPHA, archaeal histon; histone fold, DNA binding p	94.22
2f8n_G	120	Core histone macro-H2A.1; nucleosome, NCP, macroh2	92.48
1taf_B	70	TFIID TBP associated factor 62; transcription init	92.35
1id3_C	131	Histone H2A.1; nucleosome core particle, chromatin	92.03
1f66_C	128	Histone H2A.Z; nucleosome, chromatin, histone vari	91.75
2nqb_C	123	Histone H2A; nucleosome, NCP, chromatin, structura	91.56
1id3_B	102	Histone H4; nucleosome core particle, chromatin, p	91.52
1tzy_A	129	Histone H2A-IV; histone-fold, tetramer-dimer-dimer	91.0
1taf_A	68	TFIID TBP associated factor 42; transcription init	90.63
2f8n_K	149	Histone H2A type 1; nucleosome, NCP, macroh2A, his	90.5
2hue_C	84	Histone H4; mini beta sheet, elongated beta sandwh	90.26
2jss_A	192	Chimera of histone H2B.1 and histone H2A.Z; histon	87.77
3b0c_T	111	CENP-T, centromere protein T; histone fold, DNA bi	86.31
3nqj_A	82	Histone H3-like centromeric protein A; alpha helix	84.34
1n1j_B	97	NF-YC; histone-like PAIR, DNA binding protein; 1.6	84.1
2hue_B	77	Histone H3; mini beta sheet, elongated beta sandwh	83.47
1jfi_A	98	Transcription regulator NC2 alpha chain; histone,	82.54
1n1j_A	93	NF-YB; histone-like PAIR, DNA binding protein; 1.6	82.07
4g92_C	119	HAPE; transcription factor, nucleosome, minor groo	80.08

>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...

Probab=99.96  E-value=1.1e-30  Score=179.27  Aligned_cols=58  Identities=53%  Similarity=0.799  Sum_probs=48.1

Q ss_pred             cccccccccCcchhHHHHHHHHHHH-------------------------------HHhhcCCCCcchHHHHHHHHhhcc
Q 045954           19 NKEKKCAKKSIKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSWEFHTVGRLVLP   67 (76)
Q Consensus        19 ~~~kkrkkkr~esy~~YiykVLKqV-------------------------------La~~nkr~TitsrEIqtAvrLlLP   67 (76)
                      ++++++++++.|||++|||||||||                               |++||+|+|||+||||+|||||||
T Consensus        25 ~~~~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLp  104 (126)
T 1tzy_B           25 KGDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLP  104 (126)
T ss_dssp             ---------CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSC
T ss_pred             CCCCCccccccccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCc
Confidence            3456778889999999999999999                               999999999999999999999999


Q ss_pred             hhhhhhccC
Q 045954           68 GELAKHTVF   76 (76)
Q Consensus        68 GELaKhAvs   76 (76)
                      |||+|||||
T Consensus       105 GELaKhAvs  113 (126)
T 1tzy_B          105 GELAKHAVS  113 (126)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999985

>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*

Probab=99.96  E-value=1.7e-30  Score=177.75  Aligned_cols=58  Identities=53%  Similarity=0.798  Sum_probs=49.8

Q ss_pred             cccccccccCcchhHHHHHHHHHHH-------------------------------HHhhcCCCCcchHHHHHHHHhhcc
Q 045954           19 NKEKKCAKKSIKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSWEFHTVGRLVLP   67 (76)
Q Consensus        19 ~~~kkrkkkr~esy~~YiykVLKqV-------------------------------La~~nkr~TitsrEIqtAvrLlLP   67 (76)
                      +++++++++++|||++|||||||||                               |++||+|+|||+||||+|||||||
T Consensus        22 ~~~~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLp  101 (123)
T 2nqb_D           22 KTDKKKKRKRKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLP  101 (123)
T ss_dssp             -------CCCCCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSC
T ss_pred             CCCCCCCccccchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCc
Confidence            3456777889999999999999999                               999999999999999999999999


Q ss_pred             hhhhhhccC
Q 045954           68 GELAKHTVF   76 (76)
Q Consensus        68 GELaKhAvs   76 (76)
                      |||+|||||
T Consensus       102 GELaKhAvs  110 (123)
T 2nqb_D          102 GELAKHAVS  110 (123)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999985

>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1

Probab=99.82  E-value=4e-21  Score=136.37  Aligned_cols=49  Identities=55%  Similarity=0.821  Sum_probs=46.9

Q ss_pred             CcchhHHHHHHHHHHH-------------------------------HHhhcCCCCcchHHHHHHHHhhcchhhhhhccC
Q 045954           28 SIKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTVF   76 (76)
Q Consensus        28 r~esy~~YiykVLKqV-------------------------------La~~nkr~TitsrEIqtAvrLlLPGELaKhAvs   76 (76)
                      ++|||++|||||||||                               |++||+++|||+||||+||+|+|||||+|||++
T Consensus         1 ~~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpgeLak~Av~   80 (192)
T 2jss_A            1 RKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVS   80 (192)
T ss_dssp             CCSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSHHHHHHHH
T ss_pred             CcchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence            4799999999999999                               899999999999999999999999999999974

>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W

Probab=97.81  E-value=2.1e-05  Score=48.06  Aligned_cols=23  Identities=17%  Similarity=0.124  Sum_probs=22.0

Q ss_pred             HHhhcCCCCcchHHHHHHHHhhc
Q 045954           44 FARYKKKPMITSWEFHTVGRLVL   66 (76)
Q Consensus        44 La~~nkr~TitsrEIqtAvrLlL   66 (76)
                      ++++++|.||+++||++|++.+|
T Consensus        49 ~a~~~~rKTI~~~dI~~A~~~ll   71 (76)
T 3b0c_W           49 NAFENKSKIIKPEHTIAAAKVIL   71 (76)
T ss_dssp             HHHHHTCSSBCHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCHHHHHHHHHHHH
Confidence            89999999999999999999887

>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A

Probab=96.15  E-value=0.0069  Score=35.52  Aligned_cols=32  Identities=6%  Similarity=0.075  Sum_probs=25.4

Q ss_pred             HHHHHHHHHH--HHhhcCCCCcchHHHHHHHHhh
Q 045954           34 IYIFKVLKQV--FARYKKKPMITSWEFHTVGRLV   65 (76)
Q Consensus        34 ~YiykVLKqV--La~~nkr~TitsrEIqtAvrLl   65 (76)
                      .||-.+...-  .+.+++|.||+.+|||.|++.|
T Consensus        34 ~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l   67 (68)
T 1b67_A           34 EMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred             HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence            4555555544  8899999999999999999865

>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2

Probab=95.78  E-value=0.012  Score=40.75  Aligned_cols=25  Identities=8%  Similarity=0.157  Sum_probs=24.0

Q ss_pred             HHhhcCCCCcchHHHHHHHHhhcch
Q 045954           44 FARYKKKPMITSWEFHTVGRLVLPG   68 (76)
Q Consensus        44 La~~nkr~TitsrEIqtAvrLlLPG   68 (76)
                      ++++.+|.|||.+||+.|++..||.
T Consensus       126 ~a~ha~RKTIt~eDV~~Al~~~~~~  150 (154)
T 1f1e_A          126 YADEDGRKTVQGEDVEKAITYSMPK  150 (154)
T ss_dssp             HHHHTTCSEECHHHHHHHHHHHSGG
T ss_pred             HHHHcCCCccCHHHHHHHHHhcCCc
Confidence            9999999999999999999999994

>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...

Probab=94.96  E-value=0.033  Score=35.49  Aligned_cols=22  Identities=9%  Similarity=0.116  Sum_probs=20.6

Q ss_pred             HHhhcCCCCcchHHHHHHHHhh
Q 045954           44 FARYKKKPMITSWEFHTVGRLV   65 (76)
Q Consensus        44 La~~nkr~TitsrEIqtAvrLl   65 (76)
                      ++++++|.|||.+||+.|++-+
T Consensus        73 ~a~hakRktIt~~DV~~Alr~~   94 (103)
T 1tzy_D           73 YTEHAKRKTVTAMDVVYALKRQ   94 (103)
T ss_dssp             HHHHTTCSEECHHHHHHHHHHT
T ss_pred             HHHHcCCCcCCHHHHHHHHHHc
Confidence            8899999999999999999865

>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}

Probab=94.83  E-value=0.038  Score=35.27  Aligned_cols=22  Identities=14%  Similarity=0.137  Sum_probs=20.6

Q ss_pred             HHhhcCCCCcchHHHHHHHHhh
Q 045954           44 FARYKKKPMITSWEFHTVGRLV   65 (76)
Q Consensus        44 La~~nkr~TitsrEIqtAvrLl   65 (76)
                      ++++++|.|||.+||+.|++-+
T Consensus        73 ~a~hakRktvt~~DV~~Alr~~   94 (103)
T 2yfw_B           73 YTEHAKRKTVTSLDVVYALKRQ   94 (103)
T ss_dssp             HHHHTTCSEECHHHHHHHHHHH
T ss_pred             HHHHcCCCcCcHHHHHHHHHHc
Confidence            8999999999999999999865

>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2

Probab=94.22  E-value=0.056  Score=31.90  Aligned_cols=31  Identities=16%  Similarity=0.273  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHH--HHhhcCCCCcchHHHHHHHH
Q 045954           33 NIYIFKVLKQV--FARYKKKPMITSWEFHTVGR   63 (76)
Q Consensus        33 ~~YiykVLKqV--La~~nkr~TitsrEIqtAvr   63 (76)
                      ..|+-.|++..  .+.+.+|.||+.+||+.|++
T Consensus        37 ~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~   69 (70)
T 1ku5_A           37 EEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK   69 (70)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence            34444444444  89999999999999999986

>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C

Probab=92.48  E-value=0.15  Score=33.62  Aligned_cols=33  Identities=24%  Similarity=0.203  Sum_probs=26.7

Q ss_pred             hhHHHHHHHHHHH----------HHhhcCCCCcchHHHHHHHH
Q 045954           31 TYNIYIFKVLKQV----------FARYKKKPMITSWEFHTVGR   63 (76)
Q Consensus        31 sy~~YiykVLKqV----------La~~nkr~TitsrEIqtAvr   63 (76)
                      +=.+|+-.||.-+          .++.+++.+||+++||-||+
T Consensus        44 ~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~   86 (120)
T 2f8n_G           44 GAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA   86 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence            3456777776644          67889999999999999998

>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3

Probab=92.35  E-value=0.16  Score=30.98  Aligned_cols=30  Identities=7%  Similarity=0.225  Sum_probs=23.2

Q ss_pred             HHHHHHHHH--HHhhcCCCCcchHHHHHHHHh
Q 045954           35 YIFKVLKQV--FARYKKKPMITSWEFHTVGRL   64 (76)
Q Consensus        35 YiykVLKqV--La~~nkr~TitsrEIqtAvrL   64 (76)
                      ++..|+++.  ++++.+|.|||..||..|+++
T Consensus        39 r~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~   70 (70)
T 1taf_B           39 KLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV   70 (70)
T ss_dssp             HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence            444444444  999999999999999999874

>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1

Probab=92.03  E-value=0.18  Score=33.75  Aligned_cols=32  Identities=28%  Similarity=0.305  Sum_probs=25.3

Q ss_pred             hHHHHHHHHHHH----------HHhhcCCCCcchHHHHHHHH
Q 045954           32 YNIYIFKVLKQV----------FARYKKKPMITSWEFHTVGR   63 (76)
Q Consensus        32 y~~YiykVLKqV----------La~~nkr~TitsrEIqtAvr   63 (76)
                      =.+|+-.||.-+          .++.+++.+|++++||-||+
T Consensus        48 A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~   89 (131)
T 1id3_C           48 APVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR   89 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence            345666666544          67789999999999999998

>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1

Probab=91.75  E-value=0.21  Score=33.36  Aligned_cols=33  Identities=21%  Similarity=0.189  Sum_probs=27.3

Q ss_pred             hhHHHHHHHHHHH----------HHhhcCCCCcchHHHHHHHH
Q 045954           31 TYNIYIFKVLKQV----------FARYKKKPMITSWEFHTVGR   63 (76)
Q Consensus        31 sy~~YiykVLKqV----------La~~nkr~TitsrEIqtAvr   63 (76)
                      +=.+|+-.||.-+          .++.+++.+||+++||-||+
T Consensus        50 ~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~   92 (128)
T 1f66_C           50 TAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR   92 (128)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence            3457777777765          67789999999999999998

>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*

Probab=91.56  E-value=0.23  Score=32.93  Aligned_cols=32  Identities=25%  Similarity=0.291  Sum_probs=24.8

Q ss_pred             hHHHHHHHHHHH----------HHhhcCCCCcchHHHHHHHH
Q 045954           32 YNIYIFKVLKQV----------FARYKKKPMITSWEFHTVGR   63 (76)
Q Consensus        32 y~~YiykVLKqV----------La~~nkr~TitsrEIqtAvr   63 (76)
                      =.+|+-.||.-+          .++.+++.+|++++||-||+
T Consensus        46 A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~   87 (123)
T 2nqb_C           46 APVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR   87 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence            345555555544          67789999999999999998

>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1

Probab=91.52  E-value=0.27  Score=31.45  Aligned_cols=22  Identities=14%  Similarity=0.137  Sum_probs=20.5

Q ss_pred             HHhhcCCCCcchHHHHHHHHhh
Q 045954           44 FARYKKKPMITSWEFHTVGRLV   65 (76)
Q Consensus        44 La~~nkr~TitsrEIqtAvrLl   65 (76)
                      ++++.+|.|||..||..|++-+
T Consensus        72 ~a~HakRKTVt~~DV~~ALkr~   93 (102)
T 1id3_B           72 YTEHAKRKTVTSLDVVYALKRQ   93 (102)
T ss_dssp             HHHHTTCSEECHHHHHHHHHHT
T ss_pred             HHHHcCCCcCcHHHHHHHHHHc
Confidence            8999999999999999999855

>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...

Probab=91.00  E-value=0.27  Score=32.81  Aligned_cols=20  Identities=30%  Similarity=0.209  Sum_probs=18.6

Q ss_pred             HHhhcCCCCcchHHHHHHHH
Q 045954           44 FARYKKKPMITSWEFHTVGR   63 (76)
Q Consensus        44 La~~nkr~TitsrEIqtAvr   63 (76)
                      .++.+++.+|++++||-||+
T Consensus        70 ~A~~~k~krItp~hi~lAI~   89 (129)
T 1tzy_A           70 AARDNKKTRIIPRHLQLAIR   89 (129)
T ss_dssp             HHHHTTCSEECHHHHHHHHH
T ss_pred             HHHhcCCCeEcHHHHHHHHh
Confidence            67789999999999999998

>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3

Probab=90.63  E-value=0.46  Score=28.69  Aligned_cols=33  Identities=18%  Similarity=0.293  Sum_probs=26.5

Q ss_pred             HHHHHHHHHH--HHhhcCCCCcchHHHHHHHHhhc
Q 045954           34 IYIFKVLKQV--FARYKKKPMITSWEFHTVGRLVL   66 (76)
Q Consensus        34 ~YiykVLKqV--La~~nkr~TitsrEIqtAvrLlL   66 (76)
                      .|+..||+..  ++.+.+|.||+..||+-|+...+
T Consensus        33 ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~~   67 (68)
T 1taf_A           33 RYVTSILDDAKVYANHARKKTIDLDDVRLATEVTL   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcc
Confidence            4555666655  99999999999999999998643

>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1

Probab=90.50  E-value=0.31  Score=33.54  Aligned_cols=20  Identities=30%  Similarity=0.209  Sum_probs=18.6

Q ss_pred             HHhhcCCCCcchHHHHHHHH
Q 045954           44 FARYKKKPMITSWEFHTVGR   63 (76)
Q Consensus        44 La~~nkr~TitsrEIqtAvr   63 (76)
                      .++.+++.+|++++||-||+
T Consensus        89 ~A~~~krkrItprhI~lAI~  108 (149)
T 2f8n_K           89 AARDNKKTRIIPRHLQLAIR  108 (149)
T ss_dssp             HHHHTTCSEECHHHHHHHHH
T ss_pred             HHHhcCCCcCcHHHHHHHHh
Confidence            67789999999999999998

>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B

Probab=90.26  E-value=0.3  Score=29.95  Aligned_cols=34  Identities=9%  Similarity=0.257  Sum_probs=27.0

Q ss_pred             hHHHHHHHHHHH--HHhhcCCCCcchHHHHHHHHhh
Q 045954           32 YNIYIFKVLKQV--FARYKKKPMITSWEFHTVGRLV   65 (76)
Q Consensus        32 y~~YiykVLKqV--La~~nkr~TitsrEIqtAvrLl   65 (76)
                      ...|+-.|+++.  ++++.+|.|||..||..|++-+
T Consensus        40 l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~   75 (84)
T 2hue_C           40 LKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ   75 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence            445555566555  9999999999999999998854

>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1

Probab=87.77  E-value=0.65  Score=32.33  Aligned_cols=34  Identities=26%  Similarity=0.231  Sum_probs=28.7

Q ss_pred             chhHHHHHHHHHHH----------HHhhcCCCCcchHHHHHHHH
Q 045954           30 KTYNIYIFKVLKQV----------FARYKKKPMITSWEFHTVGR   63 (76)
Q Consensus        30 esy~~YiykVLKqV----------La~~nkr~TitsrEIqtAvr   63 (76)
                      ++-.+|+-.||.-+          .++.+++.+|++++||-|++
T Consensus       127 ~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~  170 (192)
T 2jss_A          127 SKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR  170 (192)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence            34578888888766          67789999999999999998

>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T

Probab=86.31  E-value=0.96  Score=29.20  Aligned_cols=31  Identities=6%  Similarity=0.159  Sum_probs=23.8

Q ss_pred             HHHHHHHHHH--HHhhcCCCCcchHHHHHHHHh
Q 045954           34 IYIFKVLKQV--FARYKKKPMITSWEFHTVGRL   64 (76)
Q Consensus        34 ~YiykVLKqV--La~~nkr~TitsrEIqtAvrL   64 (76)
                      .|+-.|.+..  ++++.+|.||+..||..|++-
T Consensus        39 ~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr   71 (111)
T 3b0c_T           39 RYFKQISSDLEAYSQHAGRKTVEMADVELLMRR   71 (111)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence            3444444443  999999999999999999884

>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}

Probab=84.34  E-value=2  Score=26.84  Aligned_cols=32  Identities=3%  Similarity=0.195  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHH--HHhhcCCCCcchHHHHHHHHh
Q 045954           33 NIYIFKVLKQV--FARYKKKPMITSWEFHTVGRL   64 (76)
Q Consensus        33 ~~YiykVLKqV--La~~nkr~TitsrEIqtAvrL   64 (76)
                      ..|+-.+++..  ++.+.+|.||..+|||-|.|+
T Consensus        41 E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~ri   74 (82)
T 3nqj_A           41 EAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI   74 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHH
Confidence            34555555544  788999999999999999996

>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3

Probab=84.10  E-value=1.2  Score=27.70  Aligned_cols=21  Identities=5%  Similarity=-0.031  Sum_probs=18.7

Q ss_pred             HHhhcCCCCcchHHHHHHHHh
Q 045954           44 FARYKKKPMITSWEFHTVGRL   64 (76)
Q Consensus        44 La~~nkr~TitsrEIqtAvrL   64 (76)
                      .++.++|.||+.++|+.||+-
T Consensus        64 ~a~~~krktI~~~di~~Av~~   84 (97)
T 1n1j_B           64 HTEDNKRRTLQRNDIAMAITK   84 (97)
T ss_dssp             HHHHTTCSEECHHHHHHHHTT
T ss_pred             HHHHcCCccCCHHHHHHHHhc
Confidence            677899999999999999873

>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}

Probab=83.47  E-value=1.8  Score=26.69  Aligned_cols=31  Identities=16%  Similarity=0.281  Sum_probs=25.3

Q ss_pred             HHHHHHHHHH--HHhhcCCCCcchHHHHHHHHh
Q 045954           34 IYIFKVLKQV--FARYKKKPMITSWEFHTVGRL   64 (76)
Q Consensus        34 ~YiykVLKqV--La~~nkr~TitsrEIqtAvrL   64 (76)
                      .|+-.+++..  ++.+.+|.||..+|||-|.|+
T Consensus        40 aylv~lfeda~l~A~HAkRvTi~~kDiqLa~ri   72 (77)
T 2hue_B           40 AYLVALFEDTNLCAIHAKRVTIMPKDIQLARRI   72 (77)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHH
Confidence            4555555554  889999999999999999985

>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3

Probab=82.54  E-value=0.65  Score=29.18  Aligned_cols=31  Identities=10%  Similarity=0.147  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHH----------HHhhcCCCCcchHHHHHHHH
Q 045954           33 NIYIFKVLKQV----------FARYKKKPMITSWEFHTVGR   63 (76)
Q Consensus        33 ~~YiykVLKqV----------La~~nkr~TitsrEIqtAvr   63 (76)
                      ..|+-+++.-.          .++.+++.||+.++|+.||+
T Consensus        35 ~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~   75 (98)
T 1jfi_A           35 PVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIE   75 (98)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence            45666666543          66789999999999999986

>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3

Probab=82.07  E-value=2.6  Score=25.80  Aligned_cols=31  Identities=10%  Similarity=0.018  Sum_probs=23.9

Q ss_pred             HHHHHHHHHH--HHhhcCCCCcchHHHHHHHHh
Q 045954           34 IYIFKVLKQV--FARYKKKPMITSWEFHTVGRL   64 (76)
Q Consensus        34 ~YiykVLKqV--La~~nkr~TitsrEIqtAvrL   64 (76)
                      .||--+..+-  .+...+|.||+..||+.|++-
T Consensus        42 ~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~   74 (93)
T 1n1j_A           42 EFISFITSEASERCHQEKRKTINGEDILFAMST   74 (93)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence            3444444444  778899999999999999983

>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*

Probab=80.08  E-value=2  Score=27.79  Aligned_cols=20  Identities=10%  Similarity=0.059  Sum_probs=18.5

Q ss_pred             HHhhcCCCCcchHHHHHHHH
Q 045954           44 FARYKKKPMITSWEFHTVGR   63 (76)
Q Consensus        44 La~~nkr~TitsrEIqtAvr   63 (76)
                      .++-++|.||+.++|+.||+
T Consensus        86 ~a~~~krktI~~~di~~Av~  105 (119)
T 4g92_C           86 HAEDNKRRTLQRSDIAAALS  105 (119)
T ss_dssp             HHHHTTCSEECHHHHHHHHT
T ss_pred             HHHhcccCccCHHHHHHHHh
Confidence            67889999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	76
d1tzyb_	92	a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus)	3e-09

>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Length = 92

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2B
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

 Score = 46.7 bits (111), Expect = 3e-09
 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 31/76 (40%)

Query: 31 TYNIYIFKVLKQVF-------------------------------ARYKKKPMITSWEFH 59
          +Y+IY++KVLKQV                                A Y K+  ITS E  
Sbjct: 4  SYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQ 63

Query: 60 TVGRLVLPGELAKHTV 75
          T  RL+LPGELAKH V
Sbjct: 64 TAVRLLLPGELAKHAV 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	76
d1tzyb_	92	Histone H2B {Chicken (Gallus gallus), erythrocytes	99.95
d1q9ca_	172	Histone domain of Son of sevenless protein {Human	98.68
d1f1ea_	151	Archaeal histone {Archaeon Methanopyrus kandleri [	98.16
d1f1ea_	151	Archaeal histone {Archaeon Methanopyrus kandleri [	97.44
d1htaa_	68	Archaeal histone {Archaeon Methanothermus fervidus	95.21
d2huec1	82	Histone H4 {African clawed frog (Xenopus laevis) [	91.97
d1ku5a_	66	Archaeal histone {Archaeon (Pyrococcus horikoshii)	91.45
d1q9ca_	172	Histone domain of Son of sevenless protein {Human	90.81
d1tafb_	70	TAF(II)62 {Fruit fly (Drosophila melanogaster) [Ta	89.55

>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2B
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=99.95  E-value=7.3e-29  Score=160.70  Aligned_cols=49  Identities=57%  Similarity=0.881  Sum_probs=47.6

Q ss_pred             CcchhHHHHHHHHHHH-------------------------------HHhhcCCCCcchHHHHHHHHhhcchhhhhhccC
Q 045954           28 SIKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTVF   76 (76)
Q Consensus        28 r~esy~~YiykVLKqV-------------------------------La~~nkr~TitsrEIqtAvrLlLPGELaKhAvs   76 (76)
                      |+|+|++|||||||||                               |++||+++|||+||||+||||+|||||+||||+
T Consensus         1 R~esy~~Yi~kVLKqVhp~~giS~kam~imnsfvndiferIa~EA~~La~~~kr~TitsreIqtAvrL~LPgeLaKhAvs   80 (92)
T d1tzyb_           1 RKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVS   80 (92)
T ss_dssp             CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHCcHHHHHHHHH
Confidence            6899999999999999                               999999999999999999999999999999985

>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=5.9e-09  Score=72.20  Aligned_cols=48  Identities=13%  Similarity=-0.001  Sum_probs=42.2

Q ss_pred             CcchhHHHHHHHHHHH---------------------HHhhcCCCCcchHHHHHHHHhhcchhhhhhcc
Q 045954           28 SIKTYNIYIFKVLKQV---------------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV   75 (76)
Q Consensus        28 r~esy~~YiykVLKqV---------------------La~~nkr~TitsrEIqtAvrLlLPGELaKhAv   75 (76)
                      -+..|.+||+|||+||                     |...-...+.|.+|||.+|+++|||+|++||+
T Consensus        14 w~g~f~~~i~KVl~qvhP~l~i~~~Al~~i~~~i~~ll~~L~~~~p~sv~dVe~~v~~~fp~~i~~~ai   82 (172)
T d1q9ca_          14 WRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQAQPRSASDVEERVQKSFPHPIDKWAI   82 (172)
T ss_dssp             HTTSSHHHHHHHHHHHCSSSBCCHHHHHHHHHHHHHHHHHHHTTCCCSTTHHHHHHHHSSCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhCCchHHHHHH
Confidence            3558999999999999                     33444788999999999999999999999996

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.16  E-value=4.2e-07  Score=60.30  Aligned_cols=31  Identities=3%  Similarity=0.048  Sum_probs=30.0

Q ss_pred             HHhhcCCCCcchHHHHHHHHhhcchhhhhhc
Q 045954           44 FARYKKKPMITSWEFHTVGRLVLPGELAKHT   74 (76)
Q Consensus        44 La~~nkr~TitsrEIqtAvrLlLPGELaKhA   74 (76)
                      |+.+++|.||+++|||.|++++++|++.+|+
T Consensus        46 l~~~~~rKTi~~edi~~a~~~~~~~~~~~~~   76 (151)
T d1f1ea_          46 VLDASGKKTLMEEHLKALADVLMVEGVEDYD   76 (151)
T ss_dssp             HHHTTTCSEECHHHHHHHHHHHTCTTSTTCC
T ss_pred             HHHHcCCCcCCHHHHHHHHHhcccccccccc
Confidence            9999999999999999999999999999886

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.44  E-value=6.3e-05  Score=49.47  Aligned_cols=27  Identities=19%  Similarity=0.334  Sum_probs=26.1

Q ss_pred             HHhhcCCCCcchHHHHHHHHhhcc--hhh
Q 045954           44 FARYKKKPMITSWEFHTVGRLVLP--GEL   70 (76)
Q Consensus        44 La~~nkr~TitsrEIqtAvrLlLP--GEL   70 (76)
                      .+.+++|.||+.+||+.||...+|  |||
T Consensus       123 ~a~~~kRkTI~~~DI~~Av~~~~~~~~~~  151 (151)
T d1f1ea_         123 YADEDGRKTVQGEDVEKAITYSMPKGGEL  151 (151)
T ss_dssp             HHHHTTCSEECHHHHHHHHHHHSGGGGCC
T ss_pred             HHHHhCCCcCCHHHHHHHHHHcCCCcCCC
Confidence            889999999999999999999999  987

>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanothermus fervidus, histone A [TaxId: 2180]

Probab=95.21  E-value=0.015  Score=32.64  Aligned_cols=33  Identities=6%  Similarity=0.082  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHH--HHhhcCCCCcchHHHHHHHHhh
Q 045954           33 NIYIFKVLKQV--FARYKKKPMITSWEFHTVGRLV   65 (76)
Q Consensus        33 ~~YiykVLKqV--La~~nkr~TitsrEIqtAvrLl   65 (76)
                      ..||-.+..+.  .+.+.+|.||+..||..|++.+
T Consensus        34 e~fi~~l~~~a~~~a~~~kRkTi~~~DV~~Alk~~   68 (68)
T d1htaa_          34 EEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF   68 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhC
Confidence            44555555555  8899999999999999999853

>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H4
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=91.97  E-value=0.075  Score=31.37  Aligned_cols=32  Identities=9%  Similarity=0.289  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHH--HHhhcCCCCcchHHHHHHHHh
Q 045954           33 NIYIFKVLKQV--FARYKKKPMITSWEFHTVGRL   64 (76)
Q Consensus        33 ~~YiykVLKqV--La~~nkr~TitsrEIqtAvrL   64 (76)
                      ..|+-.|+++.  ++.+.+|.|||..||.-|++-
T Consensus        40 ~~~l~~i~~~a~~~~~hakRKTvt~~DV~~Alkr   73 (82)
T d2huec1          40 KVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR   73 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHh
Confidence            34455555554  999999999999999999873

>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon (Pyrococcus horikoshii) [TaxId: 53953]

Probab=91.45  E-value=0.12  Score=28.72  Aligned_cols=31  Identities=16%  Similarity=0.273  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHH--HHhhcCCCCcchHHHHHHHH
Q 045954           33 NIYIFKVLKQV--FARYKKKPMITSWEFHTVGR   63 (76)
Q Consensus        33 ~~YiykVLKqV--La~~nkr~TitsrEIqtAvr   63 (76)
                      ..||-.+..+.  .+.+.+|.||+..||..|++
T Consensus        33 e~Fi~~l~~~a~~~a~~~~RKTI~~~Dv~~Al~   65 (66)
T d1ku5a_          33 EEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK   65 (66)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Confidence            45566666665  88999999999999999985

>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.81  E-value=0.13  Score=34.44  Aligned_cols=34  Identities=21%  Similarity=0.317  Sum_probs=28.5

Q ss_pred             chhHHHHHHHHHHH----------HHhhcCCCCcchHHHHHHHH
Q 045954           30 KTYNIYIFKVLKQV----------FARYKKKPMITSWEFHTVGR   63 (76)
Q Consensus        30 esy~~YiykVLKqV----------La~~nkr~TitsrEIqtAvr   63 (76)
                      ++=..|+-.||.-+          .++.+++.+||+++|+-|++
T Consensus       119 ~~A~vyLaavLEyl~aeILelAgn~a~~~krkrItp~dI~lAi~  162 (172)
T d1q9ca_         119 HQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQDIKVAMC  162 (172)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBCCHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHcCCceecHHHHHHHHh
Confidence            44567888887766          77889999999999999997

>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)62
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.55  E-value=0.13  Score=30.33  Aligned_cols=21  Identities=10%  Similarity=0.202  Sum_probs=19.0

Q ss_pred             HHhhcCCCCcchHHHHHHHHh
Q 045954           44 FARYKKKPMITSWEFHTVGRL   64 (76)
Q Consensus        44 La~~nkr~TitsrEIqtAvrL   64 (76)
                      +.++.||.+||..||..|.|+
T Consensus        50 FMrhskR~~Ltt~Did~ALkv   70 (70)
T d1tafb_          50 FMNHAKRQKLSVRDIDMSLKV   70 (70)
T ss_dssp             HHHHTTCSSBCHHHHHHHHC-
T ss_pred             HHHHhccCcCcHHHHHHHHcC
Confidence            889999999999999999875