Citrus Sinensis ID: 045966

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
KELEFLESNNIPDIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELAREHIKDLMRQMWKKVNAYRANKDSPLSQTTADFMLNLVRASHFMYLHGDGHGVQNQETMDVAFTLLFRPIPLEDEDMVFTPSLGTKG
cccEEcccccccHHHHHHHHHHHHcccccccHHHHHccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccccccccc
cccHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHEEcccccccccEEEEccccccc
keleflesnnipdiiqWSSKIFRLQddlgtstdelkrgdVWKSIQCYMHETGVSEELAREHIKDLMRQMWKKVNAyrankdsplsqtTADFMLNLVRASHFMylhgdghgvqnqeTMDVAFTLlfrpiplededmvftpslgtkg
keleflesnnipdiiqwssKIFRLQDDLGtstdelkrgdvWKSIQCYMHETGVSEELAREHIKDLMRQMWKKVNAYrankdsplsQTTADFMLNLVRASHFMYLHGDGHGVQNQETMDVAFTLLFrpiplededmvftpslgtkg
KELEFLESNNIPDIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELAREHIKDLMRQMWKKVNAYRANKDSPLSQTTADFMLNLVRASHFMYLHGDGHGVQNQETMDVAFTLLFRPIPLEDEDMVFTPSLGTKG
*********NIPDIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELAREHIKDLMRQMWKKVNAYRAN****LSQTTADFMLNLVRASHFMYLHGDGHGVQNQETMDVAFTLLFRPIPLED*************
KELEFLESNNIPDIIQWSSKIFRLQDDLGTSTDELK*GDVWKSIQCYMHETGVSEELAREHIKDLMRQMWKKVNAYRANKDSPLSQTTADFMLNLVRASHFMYLHGDGHGVQNQETMDVAFTLLFRPIPLEDEDMVFTPS*****
KELEFLESNNIPDIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELAREHIKDLMRQMWKKVNAYRANKDSPLSQTTADFMLNLVRASHFMYLHGDGHGVQNQETMDVAFTLLFRPIPLEDEDMVFTPSLGTKG
*ELEFLESNNIPDIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELAREHIKDLMRQMWKKVNAYRANKDSPLSQTTADFMLNLVRASHFMYLHGDGHGVQNQETMDVAFTLLFRPIPLEDEDMVFTP******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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KELEFLESNNIPDIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELAREHIKDLMRQMWKKVNAYRANKDSPLSQTTADFMLNLVRASHFMYLHGDGHGVQNQETMDVAFTLLFRPIPLEDEDMVFTPSLGTKG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query145 2.2.26 [Sep-21-2011]
Q8L5K3606 (R)-limonene synthase 1 O N/A no 0.986 0.235 0.806 4e-66
Q93X23597 Myrcene synthase, chlorop N/A no 0.813 0.197 0.605 2e-34
Q8L5K4600 Gamma-terpinene synthase, N/A no 0.855 0.206 0.582 1e-33
Q6PWU2590 (-)-alpha-terpineol synth no no 0.8 0.196 0.564 2e-30
E3W206576 Alpha-bisabolol synthase N/A no 0.862 0.217 0.460 7e-29
A7IZZ1622 (-)-limonene synthase, ch N/A no 0.820 0.191 0.512 2e-28
G1JUH1607 (-)-camphene/tricyclene s N/A no 0.875 0.209 0.460 3e-28
E3W205576 Beta-bisabolene synthase N/A no 0.862 0.217 0.452 3e-28
F6M8I0576 Monoterpene synthase OS=S N/A no 0.862 0.217 0.452 3e-28
B5A434576 (+)-alpha-terpineol synth N/A no 0.862 0.217 0.452 3e-28
>sp|Q8L5K3|RLC1_CITLI (R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1 Back     alignment and function desciption
 Score =  249 bits (636), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 117/145 (80%), Positives = 131/145 (90%), Gaps = 2/145 (1%)

Query: 1   KELEFLESNNIPDIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELARE 60
           KELEFLESN  PDI+ WSSKIFRLQDDLGTS+DE++RGDV KSIQCYMHETG SEE+AR+
Sbjct: 464 KELEFLESN--PDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVARQ 521

Query: 61  HIKDLMRQMWKKVNAYRANKDSPLSQTTADFMLNLVRASHFMYLHGDGHGVQNQETMDVA 120
           HIKD+MRQMWKKVNAY A+KDSPL+ TT +F+LNLVR SHFMYLHGDGHGVQNQET+DV 
Sbjct: 522 HIKDMMRQMWKKVNAYTADKDSPLTGTTTEFLLNLVRMSHFMYLHGDGHGVQNQETIDVG 581

Query: 121 FTLLFRPIPLEDEDMVFTPSLGTKG 145
           FTLLF+PIPLED+ M FT S GTKG
Sbjct: 582 FTLLFQPIPLEDKHMAFTASPGTKG 606

Citrus limon (taxid: 2708)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 2EC: 0
>sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1 Back     alignment and function description
>sp|Q8L5K4|GTPS_CITLI Gamma-terpinene synthase, chloroplastic OS=Citrus limon PE=1 SV=1 Back     alignment and function description
>sp|Q6PWU2|ATESY_VITVI (-)-alpha-terpineol synthase OS=Vitis vinifera PE=1 SV=1 Back     alignment and function description
>sp|E3W206|SPIBS_SANSP Alpha-bisabolol synthase OS=Santalum spicatum PE=2 SV=1 Back     alignment and function description
>sp|A7IZZ1|TPS1_CANSA (-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1 Back     alignment and function description
>sp|G1JUH1|TPS3_SOLLC (-)-camphene/tricyclene synthase, chloroplastic OS=Solanum lycopersicum GN=TPS3 PE=1 SV=1 Back     alignment and function description
>sp|E3W205|SAUBS_SANAS Beta-bisabolene synthase OS=Santalum austrocaledonicum PE=2 SV=2 Back     alignment and function description
>sp|F6M8I0|MTPS2_SANAL Monoterpene synthase OS=Santalum album GN=MonoTPS1 PE=3 SV=1 Back     alignment and function description
>sp|B5A434|MTPS1_SANAL (+)-alpha-terpineol synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query145
49659437 608 d-limonene synthase [Citrus unshiu] 0.986 0.235 0.827 2e-66
21435708 606 (+)-limonene synthase 2 [Citrus limon] 0.986 0.235 0.820 8e-66
41017756 606 RecName: Full=(R)-limonene synthase 1; A 0.986 0.235 0.806 3e-64
209446863 607 limonene synthase [Poncirus trifoliata] 0.986 0.235 0.793 1e-61
394556815 612 geraniol synthase [Citrus jambhiri] 0.937 0.222 0.818 3e-60
49659435 606 d-limonene synthase [Citrus unshiu] 0.986 0.235 0.779 4e-60
322424201 607 limonene synthase [Murraya paniculata] 0.896 0.214 0.735 3e-51
296090351201 unnamed protein product [Vitis vinifera] 0.806 0.582 0.627 6e-34
359495020 849 PREDICTED: myrcene synthase, chloroplast 0.862 0.147 0.609 6e-34
225465905 590 PREDICTED: myrcene synthase, chloroplast 0.806 0.198 0.627 8e-34
>gi|49659437|dbj|BAD27257.1| d-limonene synthase [Citrus unshiu] Back     alignment and taxonomy information
 Score =  256 bits (653), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 120/145 (82%), Positives = 134/145 (92%), Gaps = 2/145 (1%)

Query: 1   KELEFLESNNIPDIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELARE 60
           KELEFLESN  PDI+ WSSKIFRLQDDLGTS+DE++RGDV KSIQCYMHETG SEE+ARE
Sbjct: 466 KELEFLESN--PDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVARE 523

Query: 61  HIKDLMRQMWKKVNAYRANKDSPLSQTTADFMLNLVRASHFMYLHGDGHGVQNQETMDVA 120
           HIKD+MRQMWKKVNAY A+KDSPL++TTA+F+LNLVR SHFMYLHGDGHGVQNQET+DV 
Sbjct: 524 HIKDMMRQMWKKVNAYTADKDSPLTRTTAEFLLNLVRMSHFMYLHGDGHGVQNQETIDVG 583

Query: 121 FTLLFRPIPLEDEDMVFTPSLGTKG 145
           FTLLF+PIPLED+DM FT S GTKG
Sbjct: 584 FTLLFQPIPLEDKDMAFTASPGTKG 608

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|21435708|gb|AAM53946.1|AF514289_1 (+)-limonene synthase 2 [Citrus limon] Back     alignment and taxonomy information
>gi|41017756|sp|Q8L5K3.1|RLC1_CITLI RecName: Full=(R)-limonene synthase 1; AltName: Full=(+)-limonene synthase 1 gi|21435703|gb|AAM53944.1|AF514287_1 (+)-limonene synthase 1 [Citrus limon] gi|152962684|dbj|BAF73932.1| limonene synthase [Citrus jambhiri] Back     alignment and taxonomy information
>gi|209446863|dbj|BAG74774.1| limonene synthase [Poncirus trifoliata] Back     alignment and taxonomy information
>gi|394556815|dbj|BAM29049.1| geraniol synthase [Citrus jambhiri] Back     alignment and taxonomy information
>gi|49659435|dbj|BAD27256.1| d-limonene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|322424201|gb|ADX01382.1| limonene synthase [Murraya paniculata] Back     alignment and taxonomy information
>gi|296090351|emb|CBI40170.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359495020|ref|XP_002267019.2| PREDICTED: myrcene synthase, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225465905|ref|XP_002266808.1| PREDICTED: myrcene synthase, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query145
UNIPROTKB|Q8L5K4600 Q8L5K4 "Gamma-terpinene syntha 0.868 0.21 0.584 8.2e-32
UNIPROTKB|B5A434576 B5A434 "(+)-alpha-terpineol sy 0.862 0.217 0.452 2.8e-26
UNIPROTKB|J7LQ09542 J7LQ09 "Trans-alpha-bergamoten 0.848 0.226 0.496 4.8e-26
UNIPROTKB|B3TPQ7592 B3TPQ7 "Alpha-terpineol syntha 0.793 0.194 0.521 3.7e-24
UNIPROTKB|E2E2P0594 TPS2 "Gamma-terpinene synthase 0.793 0.193 0.486 4.8e-24
TAIR|locus:2086004598 AT3G25810 [Arabidopsis thalian 0.882 0.214 0.455 6.2e-24
TAIR|locus:2047510591 TPS10 "terpene synthase 10" [A 0.882 0.216 0.450 7.8e-24
UNIPROTKB|J7LH11546 J7LH11 "(+)-epi-alpha-bisabolo 0.882 0.234 0.462 2.8e-23
UNIPROTKB|Q8GUE4603 GerS "Geraniol synthase, chlor 0.682 0.164 0.534 7.8e-23
TAIR|locus:2829283600 TPS-CIN ""terpene synthase-lik 0.896 0.216 0.447 9.8e-23
UNIPROTKB|Q8L5K4 Q8L5K4 "Gamma-terpinene synthase, chloroplastic" [Citrus limon (taxid:2708)] Back     alignment and assigned GO terms
 Score = 354 (129.7 bits), Expect = 8.2e-32, P = 8.2e-32
 Identities = 76/130 (58%), Positives = 91/130 (70%)

Query:     1 KE-LEFLESNNIPDIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELAR 59
             KE LEFL+ +  PDII+ SS I RL+DDLGTS+DELKRGDV KSIQCYMHETGVSE+ AR
Sbjct:   474 KEALEFLQDS--PDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETGVSEDEAR 531

Query:    60 EHIKDLMRQMWKKVNAYRANKDSPLSQTTADFMLNLVRASHFMYLHGDGHGVQNQETMDV 119
             EHI+DL+ + W K+N+ R      L        +NLVR S  MYL+GDGHGVQ + T D 
Sbjct:   532 EHIRDLIAETWMKMNSARFGNPPYLPDVFIGIAMNLVRMSQCMYLYGDGHGVQ-ENTKDR 590

Query:   120 AFTLLFRPIP 129
               +L   PIP
Sbjct:   591 VLSLFIDPIP 600
GO:0000287 "magnesium ion binding" evidence=IDA
GO:0010333 "terpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|B5A434 B5A434 "(+)-alpha-terpineol synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
UNIPROTKB|J7LQ09 J7LQ09 "Trans-alpha-bergamotene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ7 B3TPQ7 "Alpha-terpineol synthase, chloroplastic" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|E2E2P0 TPS2 "Gamma-terpinene synthase, chloroplastic" [Origanum vulgare (taxid:39352)] Back     alignment and assigned GO terms
TAIR|locus:2086004 AT3G25810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047510 TPS10 "terpene synthase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|J7LH11 J7LH11 "(+)-epi-alpha-bisabolol synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q8GUE4 GerS "Geraniol synthase, chloroplastic" [Cinnamomum tenuipile (taxid:192326)] Back     alignment and assigned GO terms
TAIR|locus:2829283 TPS-CIN ""terpene synthase-like sequence-1,8-cineole"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query145
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 1e-38
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 1e-27
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 4e-20
PLN0215096 PLN02150, PLN02150, terpene synthase/cyclase famil 2e-08
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 2e-07
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  136 bits (344), Expect = 1e-38
 Identities = 53/127 (41%), Positives = 69/127 (54%), Gaps = 2/127 (1%)

Query: 1   KELEFLESNNIPDIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELARE 60
           +  E+LES   P +++ SS I RL +D+ T  DE+KRGDV  SI+CYM E GVSEE ARE
Sbjct: 418 EAFEWLESR--PKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEARE 475

Query: 61  HIKDLMRQMWKKVNAYRANKDSPLSQTTADFMLNLVRASHFMYLHGDGHGVQNQETMDVA 120
            IK ++   WK++N       S + +      LNL R     Y  GDG      E  D  
Sbjct: 476 EIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHI 535

Query: 121 FTLLFRP 127
            +LLF P
Sbjct: 536 TSLLFEP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|177811 PLN02150, PLN02150, terpene synthase/cyclase family protein Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 145
PLN0215096 terpene synthase/cyclase family protein 100.0
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279784 ent-kaur-16-ene synthase 100.0
PLN02592800 ent-copalyl diphosphate synthase 99.64
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 99.59
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 99.28
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 99.17
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 98.82
KOG1719183 consensus Dual specificity phosphatase [Defense me 92.49
COG3707194 AmiR Response regulator with putative antiterminat 85.08
PF1236828 DUF3650: Protein of unknown function (DUF3650) ; I 83.09
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information 
Probab=100.00  E-value=7.1e-42  Score=241.70  Aligned_cols=95  Identities=29%  Similarity=0.515  Sum_probs=92.0

Q ss_pred             hccCCchhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcHHHHHHHHHHhhhhhhc-cccCCCCCCCc
Q 045966           35 LKRGDVWKSIQCYMHETGVSEELAREHIKDLMRQMWKKVNAYRANKDSPLSQTTADFMLNLVRASHFM-YLHGDGHGVQN  113 (145)
Q Consensus        35 ~~rG~~~ssV~cYMke~gvSeEeA~~~i~~lie~~wK~lN~e~l~~~~~vp~~~~~~~~N~aR~~~~~-Y~~~Dg~t~~~  113 (145)
                      |+|||+||+|+|||||||+|+|||+++|+++|+++||+||+|+|+++ ++|++++++++|+||+++|+ |+++||||.++
T Consensus         1 ~~rg~vaSsIeCYMke~g~seeeA~~~i~~li~~~WK~iN~e~l~~~-~~p~~~~~~~~NlaR~~~~~~Y~~~Dg~t~~~   79 (96)
T PLN02150          1 MRRGEVANGVNCYMKQHGVTKEEAVSELKKMIRDNYKIVMEEFLTIK-DVPRPVLVRCLNLARLIDVYCYNEGDGFTYPH   79 (96)
T ss_pred             CCCCcchHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHhheecCCCCCCCCc
Confidence            58999999999999999999999999999999999999999999988 89999999999999999999 99999999887


Q ss_pred             hhHHHHHHhhccccccC
Q 045966          114 QETMDVAFTLLFRPIPL  130 (145)
Q Consensus       114 ~~~k~~I~sll~~Pi~i  130 (145)
                      ..+|++|++||++|||+
T Consensus        80 ~~~K~~I~sLlv~pi~i   96 (96)
T PLN02150         80 GKLKDLITSLFFHPLPL   96 (96)
T ss_pred             HHHHHHHHHHhccCCCC
Confidence            78999999999999985

>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms] Back     alignment and domain information
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms] Back     alignment and domain information
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query145
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 3e-25
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 5e-23
2j5c_A569 Rational Conversion Of Substrate And Product Specif 1e-19
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 4e-17
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 5e-09
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 9e-08
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 1e-07
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 1e-07
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 2e-07
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 2e-07
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 2e-07
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 2e-07
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 2e-07
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 2e-07
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 3e-07
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 2e-06
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 3e-05
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure 
Iteration: 1

 Score =  110 bits (274), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 74/116 (63%)
Query: 13  DIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELAREHIKDLMRQMWKK 72
           D+++WSS + RL DDLGTS +E+ RGDV KS+QCYM +   SE  AR+H+K L+ ++WKK
Sbjct: 427 DLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKK 486
Query: 73  VNAYRANKDSPLSQTTADFMLNLVRASHFMYLHGDGHGVQNQETMDVAFTLLFRPI 128
           +NA R +KDSP  +      ++L R +  MY +GDGHG Q+          LF P 
Sbjct: 487 MNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFEPF 542
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query145
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 1e-33
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 3e-33
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 2e-32
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 1e-31
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 1e-31
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 6e-31
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 1e-29
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 9e-29
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 2e-28
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 9e-06
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
 Score =  123 bits (308), Expect = 1e-33
 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 3/131 (2%)

Query: 3   LEFLESNNIPDIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHET-GVSEELAREH 61
           +E +      ++ +  S  +RL +D  T   E  RG     I CYM +  G +EE A +H
Sbjct: 630 VEKVHYP--SNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKH 687

Query: 62  IKDLMRQMWKKVNAYRANKDSPLSQTTADFMLNLVRASHFMYLHGDGHGVQNQETMDVAF 121
           I  ++ +  K+ +       + +      F+ NL       Y   DG+G+ N+E  D   
Sbjct: 688 ICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIR 747

Query: 122 TLLFRPIPLED 132
            +   PI +  
Sbjct: 748 KVYIDPIQVGS 758
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query145
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 99.76
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 99.7
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 99.69
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 99.64
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 99.52
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 99.37
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 95.97
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=3.4e-43  Score=309.55  Aligned_cols=127  Identities=28%  Similarity=0.448  Sum_probs=112.4

Q ss_pred             CcccccccCCchhHHHHHHHHHHhhcCcccchhhhccCCchhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 045966            1 KELEFLESNNIPDIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELAREHIKDLMRQMWKKVNAYRANK   80 (145)
Q Consensus         1 e~~ew~~~~~~p~l~~~~~~i~RL~NDi~t~~~E~~rG~~~ssV~cYMke~gvSeEeA~~~i~~lie~~wK~lN~e~l~~   80 (145)
                      |+|+|+.++  |+|++++++|+||+|||+||++|++||+++|+|+|||||||+|+|+|+++++++|+++||+||++++++
T Consensus       428 e~~e~~~~~--p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~  505 (554)
T 3g4d_A          428 ETFKWAASD--PKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKP  505 (554)
T ss_dssp             HHHHHHHTC--CHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             HHHHhcccc--HHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            468999989  999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCcHHHHHHHHHHhhhhhhccccCCCCCCCchhHHHHHHhhccccccC
Q 045966           81 DSPLSQTTADFMLNLVRASHFMYLHGDGHGVQNQETMDVAFTLLFRPIPL  130 (145)
Q Consensus        81 ~~~vp~~~~~~~~N~aR~~~~~Y~~~Dg~t~~~~~~k~~I~sll~~Pi~i  130 (145)
                      + ++|++|+++++|+||++++||+++||||.|+..||++|++||++|||+
T Consensus       506 ~-~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l  554 (554)
T 3g4d_A          506 T-EMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL  554 (554)
T ss_dssp             C-SSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred             C-CCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence            8 899999999999999999999999999998778999999999999985
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 145
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-34
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 8e-34
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 8e-14
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 8e-09
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  120 bits (303), Expect = 1e-34
 Identities = 56/128 (43%), Positives = 69/128 (53%), Gaps = 1/128 (0%)

Query: 1   KELEFLESNNIPDIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELARE 60
                       DI+  +  I RL DDLGTS  EL RGDV K+IQCYM ET  SEE A E
Sbjct: 201 DTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVE 260

Query: 61  HIKDLMRQMWKKVNAYRANKDSPLSQTTADFMLNLVRASHFMYLHGDGHGVQNQETMDVA 120
           H+K L+R+ WK +N   A    P          N+ R + F+YLHGDG GVQ+ +T +  
Sbjct: 261 HVKFLIREAWKDMNTAIA-AGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHI 319

Query: 121 FTLLFRPI 128
             LLF P 
Sbjct: 320 AGLLFEPY 327
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query145
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 99.39
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 98.93
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 95.61
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=4.6e-45  Score=302.20  Aligned_cols=125  Identities=46%  Similarity=0.657  Sum_probs=109.1

Q ss_pred             cccccccCCchhHHHHHHHHHHhhcCcccchhhhccCCchhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 045966            2 ELEFLESNNIPDIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELAREHIKDLMRQMWKKVNAYRANKD   81 (145)
Q Consensus         2 ~~ew~~~~~~p~l~~~~~~i~RL~NDi~t~~~E~~rG~~~ssV~cYMke~gvSeEeA~~~i~~lie~~wK~lN~e~l~~~   81 (145)
                      +++|+.++  |++++++++|+||+|||+||++|++||+++|+|+|||||||+|+|+|+++|+++|+++||+||+++++++
T Consensus       204 ~~~~~~~~--p~~~~~~~~i~RL~nDi~~~~~E~~rg~~~s~v~cymke~~~s~eeA~~~i~~~ie~~wk~ln~e~l~~~  281 (328)
T d1n1ba2         204 VIDSLYQY--HDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGY  281 (328)
T ss_dssp             HHHHHHTT--CHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhcc--HHHHHHHHHHHHHHhhhhhHHHHHhcCCcchHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            58999999  9999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCcHHHHHHHHHHhhhhhhccccCCCCCCCchhHHHHHHhhcccccc
Q 045966           82 SPLSQTTADFMLNLVRASHFMYLHGDGHGVQNQETMDVAFTLLFRPIP  129 (145)
Q Consensus        82 ~~vp~~~~~~~~N~aR~~~~~Y~~~Dg~t~~~~~~k~~I~sll~~Pi~  129 (145)
                       ++|++|++++||+||+++++|+++||||+|+..+|++|++||++||.
T Consensus       282 -~vp~~~~~~~ln~aR~~~~~Y~~~Dgyt~~~~~~k~~I~~ll~ePvs  328 (328)
T d1n1ba2         282 -PFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEPYA  328 (328)
T ss_dssp             -SSCHHHHHHHHHHHHHHHHHTTTSCCC----CHHHHHHHHHHTSCCC
T ss_pred             -CCCHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHhccCCC
Confidence             89999999999999999999999999999877899999999999984
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure