Citrus Sinensis ID: 045990

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
MISGLDVHVSCENLGIYGYPIEIQALFFMALRCALSLLKHDAEGKEFIERIVKRLHALSYHMRSYFWLDFQQLNDIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPIRGGYFIGNVSPARMDFRWFALGNCVAILSSLATPEQSMAIMDLIEARWEELVGEMPLKIAYPAIESHEWRIVTGCDPKNTRWSYHNGGSWPVLLWMLTAACIKTGRPQIARRAIDLAEARMLKDCWPEYYDGKLGRYIGKQARKYQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQMKPVIRRSSSWNC
cccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccccHHHcHHHHHHcccccccccHHHHHHccccccEEcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHcccccc
cccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcEEcHHHHHHHHccccHHccccHHcccccccccccHHHHHHccccccEEEEccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccEEEcccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHcccccccEccHHHHHHHHHHHHHHHHHHHHHHcHHHccEEcccccHHHHHHHHccccccc
misgldvhvscenlgiygypIEIQALFFMALRCALSLLKHDAEGKEFIERIVKRLHALSYHMRSYFWLDFQQLNDIYrykteeyshtavnkfnvipdsipdwvfdfmpirggyfignvsparmdFRWFALGNCVAILSSLATPEQSMAIMDLIEARWEELvgemplkiaypaieshewrivtgcdpkntrwsyhnggsWPVLLWMLTAACIKTGRPQIARRAIDLAEARMLkdcwpeyydgklgryiGKQARKYQTWSIAGYLVAKMmledpshlgmisleedkqmkpvirrssswnc
MISGLDVHVSCENLGIYGYPIEIQALFFMALRCALSLLKHDAEGKEFIERIVKRLHALSYHMRSYFWLDFQQLNDIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPIRGGYFIGNVSPARMDFRWFALGNCVAILSSLATPEQSMAIMDLIEARWEELVGEMPLKIAYPAIESHEWRIVTGCDPKNTRWSYHNGGSWPVLLWMLTAACIKTGRPQIARRAIDLAEARMLKDCWPEYYDGKLGRYIGKQARKYQTWSIAGYLVAKMMLEDPSHLGmisleedkqmkpvirrssswnc
MISGLDVHVSCENLGIYGYPIEIQALFFMALRCALSLLKHDAEGKEFIERIVKRLHALSYHMRSYFWLDFQQLNDIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPIRGGYFIGNVSPARMDFRWFALGNCVAILSSLATPEQSMAIMDLIEARWEELVGEMPLKIAYPAIESHEWRIVTGCDPKNTRWSYHNGGSWPVLLWMLTAACIKTGRPQIARRAIDLAEARMLKDCWPEYYDGKLGRYIGKQARKYQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQMKPVIRRSSSWNC
****LDVHVSCENLGIYGYPIEIQALFFMALRCALSLLKHDAEGKEFIERIVKRLHALSYHMRSYFWLDFQQLNDIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPIRGGYFIGNVSPARMDFRWFALGNCVAILSSLATPEQSMAIMDLIEARWEELVGEMPLKIAYPAIESHEWRIVTGCDPKNTRWSYHNGGSWPVLLWMLTAACIKTGRPQIARRAIDLAEARMLKDCWPEYYDGKLGRYIGKQARKYQTWSIAGYLVAKMMLED***************************
***GLDVHVSCENLGIYGYPIEIQALFFMALRCALSLLKHDAEGKEFIERIVKRLHALSYHMRSYFWLDFQQLNDIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPIRGGYFIGNVSPARMDFRWFALGNCVAILSSLATPEQSMAIMDLIEARWEELVGEMPLKIAYPAIESHEWRIVTGCDPKNTRWSYHNGGSWPVLLWMLTAACIKTGRPQIARRAIDLAEARMLKDCWPEYYDGKLGRYIGKQARKYQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQMKPVIRRS*SW**
MISGLDVHVSCENLGIYGYPIEIQALFFMALRCALSLLKHDAEGKEFIERIVKRLHALSYHMRSYFWLDFQQLNDIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPIRGGYFIGNVSPARMDFRWFALGNCVAILSSLATPEQSMAIMDLIEARWEELVGEMPLKIAYPAIESHEWRIVTGCDPKNTRWSYHNGGSWPVLLWMLTAACIKTGRPQIARRAIDLAEARMLKDCWPEYYDGKLGRYIGKQARKYQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQMKP**********
*ISGLDVHVSCENLGIYGYPIEIQALFFMALRCALSLLKHDAEGKEFIERIVKRLHALSYHMRSYFWLDFQQLNDIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPIRGGYFIGNVSPARMDFRWFALGNCVAILSSLATPEQSMAIMDLIEARWEELVGEMPLKIAYPAIESHEWRIVTGCDPKNTRWSYHNGGSWPVLLWMLTAACIKTGRPQIARRAIDLAEARMLKDCWPEYYDGKLGRYIGKQARKYQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQMKPVIRRS*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MISGLDVHVSCENLGIYGYPIEIQALFFMALRCALSLLKHDAEGKEFIERIVKRLHALSYHMRSYFWLDFQQLNDIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPIRGGYFIGNVSPARMDFRWFALGNCVAILSSLATPEQSMAIMDLIEARWEELVGEMPLKIAYPAIESHEWRIVTGCDPKNTRWSYHNGGSWPVLLWMLTAACIKTGRPQIARRAIDLAEARMLKDCWPEYYDGKLGRYIGKQARKYQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQMKPVIRRSSSWNC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query298
74476783 557 neutral/alkaline invertase [Manihot escu 0.956 0.511 0.943 1e-162
288901118 557 neutral/alkaline invertase 1 [Hevea bras 0.956 0.511 0.943 1e-162
384371338 557 neutral/alkaline invertase [Manihot escu 0.956 0.511 0.936 1e-162
288901116 557 neutral/alkaline invertase 2 [Hevea bras 0.956 0.511 0.940 1e-161
385282636 557 cytosolic invertase 1 [Prunus persica] 0.956 0.511 0.943 1e-161
449443830 554 PREDICTED: uncharacterized protein LOC10 0.956 0.514 0.929 1e-161
224135579 557 predicted protein [Populus trichocarpa] 0.956 0.511 0.936 1e-160
224146371 557 predicted protein [Populus trichocarpa] 0.956 0.511 0.936 1e-159
225460726 556 PREDICTED: uncharacterized protein LOC10 0.956 0.512 0.919 1e-159
356535680 555 PREDICTED: uncharacterized protein LOC10 0.956 0.513 0.933 1e-159
>gi|74476783|gb|ABA08442.1| neutral/alkaline invertase [Manihot esculenta] Back     alignment and taxonomy information
 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 269/285 (94%), Positives = 278/285 (97%)

Query: 14  LGIYGYPIEIQALFFMALRCALSLLKHDAEGKEFIERIVKRLHALSYHMRSYFWLDFQQL 73
           +GIYGYPIEIQALFFMALRCALS+LKHD EGKE IERIVKRLHALSYHMR YFWLDFQQL
Sbjct: 273 MGIYGYPIEIQALFFMALRCALSMLKHDTEGKECIERIVKRLHALSYHMRGYFWLDFQQL 332

Query: 74  NDIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPIRGGYFIGNVSPARMDFRWFALGNC 133
           NDIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMP RGGYFIGNVSPARMDFRWFALGNC
Sbjct: 333 NDIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPTRGGYFIGNVSPARMDFRWFALGNC 392

Query: 134 VAILSSLATPEQSMAIMDLIEARWEELVGEMPLKIAYPAIESHEWRIVTGCDPKNTRWSY 193
           VAILSSLATPEQSMAIMDLIE+RWEELVGEMP+KIAYPAIESHEWRIVTGCDPKNTRWSY
Sbjct: 393 VAILSSLATPEQSMAIMDLIESRWEELVGEMPMKIAYPAIESHEWRIVTGCDPKNTRWSY 452

Query: 194 HNGGSWPVLLWMLTAACIKTGRPQIARRAIDLAEARMLKDCWPEYYDGKLGRYIGKQARK 253
           HNGGSWPVLLWMLTAACIKTGRPQIARRAIDLAE R+LKD WPEYYDGK+GR+IGKQARK
Sbjct: 453 HNGGSWPVLLWMLTAACIKTGRPQIARRAIDLAETRLLKDGWPEYYDGKVGRFIGKQARK 512

Query: 254 YQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQMKPVIRRSSSWNC 298
           YQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQMKPVI+RS+SW C
Sbjct: 513 YQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQMKPVIKRSTSWTC 557

Source: Manihot esculenta

Species: Manihot esculenta

Genus: Manihot

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|288901118|gb|ADC68261.1| neutral/alkaline invertase 1 [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|384371338|gb|AFH77958.1| neutral/alkaline invertase [Manihot esculenta] Back     alignment and taxonomy information
>gi|288901116|gb|ADC68260.1| neutral/alkaline invertase 2 [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|385282636|gb|AFI57905.1| cytosolic invertase 1 [Prunus persica] Back     alignment and taxonomy information
>gi|449443830|ref|XP_004139679.1| PREDICTED: uncharacterized protein LOC101214631 [Cucumis sativus] gi|449520833|ref|XP_004167437.1| PREDICTED: uncharacterized LOC101214631 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224135579|ref|XP_002327253.1| predicted protein [Populus trichocarpa] gi|222835623|gb|EEE74058.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224146371|ref|XP_002325983.1| predicted protein [Populus trichocarpa] gi|222862858|gb|EEF00365.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225460726|ref|XP_002271919.1| PREDICTED: uncharacterized protein LOC100257298 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356535680|ref|XP_003536372.1| PREDICTED: uncharacterized protein LOC100781129 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query298
TAIR|locus:2133737558 CINV2 "cytosolic invertase 2" 0.956 0.510 0.894 8.1e-147
TAIR|locus:2199690534 A/N-InvD "alkaline/neutral inv 0.949 0.529 0.908 3.2e-145
TAIR|locus:2116870571 A/N-InvB "alkaline/neutral inv 0.956 0.499 0.873 2e-143
TAIR|locus:2016064499 A/N-InvF "alkaline/neutral inv 0.949 0.567 0.890 2.6e-143
TAIR|locus:2014676551 CINV1 "cytosolic invertase 1" 0.949 0.513 0.851 2.1e-139
TAIR|locus:2171112617 INV-E "alkaline/neutral invert 0.919 0.444 0.602 1.3e-93
TAIR|locus:2027600616 A/N-InvA "alkaline/neutral inv 0.956 0.462 0.525 1.2e-90
TAIR|locus:2084329664 A/N-InvC "alkaline/neutral inv 0.916 0.411 0.553 9.6e-89
TAIR|locus:2074434659 INVH "invertase H" [Arabidopsi 0.916 0.414 0.538 2.4e-85
TAIR|locus:2133737 CINV2 "cytosolic invertase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1434 (509.9 bits), Expect = 8.1e-147, P = 8.1e-147
 Identities = 255/285 (89%), Positives = 275/285 (96%)

Query:    14 LGIYGYPIEIQALFFMALRCALSLLKHDAEGKEFIERIVKRLHALSYHMRSYFWLDFQQL 73
             +G+YGYPIEIQALFFMALRCALS+LK D EG++FIERIVKRLHALS+HMRSYFWLDFQQL
Sbjct:   274 MGVYGYPIEIQALFFMALRCALSMLKPDEEGRDFIERIVKRLHALSFHMRSYFWLDFQQL 333

Query:    74 NDIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPIRGGYFIGNVSPARMDFRWFALGNC 133
             NDIYRYKTEEYSHTAVNKFNV+PDSIPDWVFDFMP+RGGYF+GNVSPARMDFRWF+LGNC
Sbjct:   334 NDIYRYKTEEYSHTAVNKFNVMPDSIPDWVFDFMPLRGGYFVGNVSPARMDFRWFSLGNC 393

Query:   134 VAILSSLATPEQSMAIMDLIEARWEELVGEMPLKIAYPAIESHEWRIVTGCDPKNTRWSY 193
             V+ILSSLATP+QSMAIMDL+E RWEELVGEMPLKI YP IESHEWRIVTGCDPKNTRWSY
Sbjct:   394 VSILSSLATPDQSMAIMDLLEHRWEELVGEMPLKICYPCIESHEWRIVTGCDPKNTRWSY 453

Query:   194 HNGGSWPVLLWMLTAACIKTGRPQIARRAIDLAEARMLKDCWPEYYDGKLGRYIGKQARK 253
             HNGGSWPVLLW LTAACIKTGRPQIARRAIDL E+R+ +DCWPEYYDGK GRY+GKQARK
Sbjct:   454 HNGGSWPVLLWTLTAACIKTGRPQIARRAIDLIESRLHRDCWPEYYDGKQGRYVGKQARK 513

Query:   254 YQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQMKPVIRRSSSWNC 298
             YQTWSIAGYLVAKMMLEDPSH+GMISLEEDKQMKPVI+RS+SW C
Sbjct:   514 YQTWSIAGYLVAKMMLEDPSHIGMISLEEDKQMKPVIKRSASWTC 558
GO:0003824 "catalytic activity" evidence=IEA
GO:0004564 "beta-fructofuranosidase activity" evidence=IGI;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0005829 "cytosol" evidence=NAS
GO:0005987 "sucrose catabolic process" evidence=IGI
GO:0048364 "root development" evidence=IGI
GO:0010075 "regulation of meristem growth" evidence=RCA
TAIR|locus:2199690 A/N-InvD "alkaline/neutral invertase D" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116870 A/N-InvB "alkaline/neutral invertase B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016064 A/N-InvF "alkaline/neutral invertase F" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014676 CINV1 "cytosolic invertase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171112 INV-E "alkaline/neutral invertase E" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027600 A/N-InvA "alkaline/neutral invertase A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084329 A/N-InvC "alkaline/neutral invertase C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2074434 INVH "invertase H" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query298
PLN03005550 PLN03005, PLN03005, beta-fructofuranosidase 0.0
PLN02973571 PLN02973, PLN02973, beta-fructofuranosidase 0.0
pfam12899437 pfam12899, Glyco_hydro_100, Alkaline and neutral i 0.0
PLN02703618 PLN02703, PLN02703, beta-fructofuranosidase 1e-135
COG3408641 COG3408, GDB1, Glycogen debranching enzyme [Carboh 6e-05
>gnl|CDD|178582 PLN03005, PLN03005, beta-fructofuranosidase Back     alignment and domain information 
 Score =  575 bits (1484), Expect = 0.0
 Identities = 243/285 (85%), Positives = 268/285 (94%)

Query: 14  LGIYGYPIEIQALFFMALRCALSLLKHDAEGKEFIERIVKRLHALSYHMRSYFWLDFQQL 73
           +G+YGYPIEIQALFFMALR ALS+LK D +G+EFIERIVKRLHALS+HMR+YFWLD Q L
Sbjct: 266 MGVYGYPIEIQALFFMALRSALSMLKPDGDGREFIERIVKRLHALSFHMRNYFWLDHQNL 325

Query: 74  NDIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPIRGGYFIGNVSPARMDFRWFALGNC 133
           NDIYR+KTEEYSHTAVNKFNV+PDSIP+WVFDFMP+RGGYF+GNV PA MDFRWFALGNC
Sbjct: 326 NDIYRFKTEEYSHTAVNKFNVMPDSIPEWVFDFMPLRGGYFVGNVGPAHMDFRWFALGNC 385

Query: 134 VAILSSLATPEQSMAIMDLIEARWEELVGEMPLKIAYPAIESHEWRIVTGCDPKNTRWSY 193
           V+ILSSLATP+QSMAIMDL+E RWEELVGEMPLKI YP +E HEWRIVTGCDPKNTRWSY
Sbjct: 386 VSILSSLATPDQSMAIMDLLEHRWEELVGEMPLKICYPCLEGHEWRIVTGCDPKNTRWSY 445

Query: 194 HNGGSWPVLLWMLTAACIKTGRPQIARRAIDLAEARMLKDCWPEYYDGKLGRYIGKQARK 253
           HNGGSWPVLLW LTAACIKTGRPQIARRA+DL E+R+ +DCWPEYYDGKLGRY+GKQARK
Sbjct: 446 HNGGSWPVLLWQLTAACIKTGRPQIARRAVDLIESRLHRDCWPEYYDGKLGRYVGKQARK 505

Query: 254 YQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQMKPVIRRSSSWNC 298
           YQTWSIAGYLVAKM+LEDPSH+GMISLEEDK MKPVI+RS+SW  
Sbjct: 506 YQTWSIAGYLVAKMLLEDPSHIGMISLEEDKLMKPVIKRSASWPQ 550

Length = 550
>gnl|CDD|178556 PLN02973, PLN02973, beta-fructofuranosidase Back     alignment and domain information
>gnl|CDD|221840 pfam12899, Glyco_hydro_100, Alkaline and neutral invertase Back     alignment and domain information
>gnl|CDD|178306 PLN02703, PLN02703, beta-fructofuranosidase Back     alignment and domain information
>gnl|CDD|225942 COG3408, GDB1, Glycogen debranching enzyme [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 298
PLN02973571 beta-fructofuranosidase 100.0
PLN03005550 beta-fructofuranosidase 100.0
PF12899436 Glyco_hydro_100: Alkaline and neutral invertase; I 100.0
PLN02703618 beta-fructofuranosidase 100.0
PF06202370 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR 100.0
TIGR015311464 glyc_debranch glycogen debranching enzymye. glycog 100.0
TIGR01561575 gde_arch glycogen debranching enzyme, archaeal typ 99.97
COG3408641 GDB1 Glycogen debranching enzyme [Carbohydrate tra 99.97
PRK10137786 alpha-glucosidase; Provisional 99.9
PRK13271569 treA trehalase; Provisional 99.84
PRK13272542 treA trehalase; Provisional 99.71
PRK13270549 treF trehalase; Provisional 99.7
PLN02567554 alpha,alpha-trehalase 99.66
KOG36251521 consensus Alpha amylase [Carbohydrate transport an 99.6
PF01204512 Trehalase: Trehalase; InterPro: IPR001661 O-Glycos 99.59
PF03200801 Glyco_hydro_63: Mannosyl oligosaccharide glucosida 99.5
TIGR01577616 oligosac_amyl oligosaccharide amylase. The name of 99.49
COG3387612 SGA1 Glucoamylase and related glycosyl hydrolases 98.77
KOG2161849 consensus Glucosidase I [Carbohydrate transport an 98.77
COG1626558 TreA Neutral trehalase [Carbohydrate transport and 98.44
PF04685365 DUF608: Protein of unknown function, DUF608; Inter 98.03
COG34591056 Cellobiose phosphorylase [Carbohydrate transport a 97.86
KOG0602600 consensus Neutral trehalase [Carbohydrate transpor 97.8
TIGR01535648 glucan_glucosid glucan 1,4-alpha-glucosidase. Gluc 97.66
PF05592509 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; Int 97.64
PF06824424 DUF1237: Protein of unknown function (DUF1237); In 95.64
PF00723448 Glyco_hydro_15: Glycosyl hydrolases family 15; Int 95.62
>PLN02973 beta-fructofuranosidase Back     alignment and domain information 
Probab=100.00  E-value=1.1e-85  Score=646.11  Aligned_cols=291  Identities=86%  Similarity=1.485  Sum_probs=286.0

Q ss_pred             eeecccCCcccceeehhHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHHHHhhhhchhcccccccccccchhhh
Q 045990            8 HVSCENLGIYGYPIEIQALFFMALRCALSLLKHDAEGKEFIERIVKRLHALSYHMRSYFWLDFQQLNDIYRYKTEEYSHT   87 (298)
Q Consensus         8 ~~~~~~~~~~G~~vEinALwYnAL~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~fw~~~~~~~~~~~~~~e~~~~~   87 (298)
                      -||||||||+|||+|||||||.|||++.+|+....+..+.+.++.+|+.+|+.+++++||++.+++|.||||+||+|+++
T Consensus       281 ~miDrrMgv~G~pLeiQaLfy~ALR~a~~~L~~~~~~~~~i~~i~~rl~~L~~hir~~ywld~~~ln~iyRykteey~~~  360 (571)
T PLN02973        281 CMIDRRMGVYGYPIEIQALFFMALRCALLLLKHDGEGKEMVEQIVKRLHALSYHMRSYFWLDLKQLNDIYRYKTEEYSHT  360 (571)
T ss_pred             cccccccccCCccHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHhhHHHHHHHHHHHHhcCHHHhhhHhhcchhhcchh
Confidence            59999999999999999999999999999887756678899999999999999999999999999999999999999999


Q ss_pred             HhhhccCCCCCCCccccccccCCCCceeccccCCCcccchhcccchhhhhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCc
Q 045990           88 AVNKFNVIPDSIPDWVFDFMPIRGGYFIGNVSPARMDFRWFALGNCVAILSSLATPEQSMAIMDLIEARWEELVGEMPLK  167 (298)
Q Consensus        88 a~n~~~i~~~~ip~~l~~~~~~~~gyl~~~v~p~~~d~~~~a~gN~LaL~~~ll~~eq~~~Vv~~v~~~~~~Llt~~gLr  167 (298)
                      |.|||||+||+||+||+||||++|||+++||+|+++|+|||++||++|+++++++++|+++|++.+++||.+|+..||||
T Consensus       361 a~NkfNi~p~sip~wl~dwlp~~gGY~igNv~Pa~~DfRffslGNllAILs~Lat~~Qs~aIm~lIe~~w~~Lvg~MPlk  440 (571)
T PLN02973        361 AVNKFNVIPDSLPEWVFDFMPPHGGFFIGNVSPARMDFRWFALGNCIAILSSLATPEQSTAIMDLIESRWEELVGEMPLK  440 (571)
T ss_pred             hhhhccCCccccchhhhhhccCCCceeeeecccccCCcchhhhhhHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCccCCCcceeccCCCCCCCCccccCCchhhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHccCCCcceeeCCCCCcC
Q 045990          168 IAYPAIESHEWRIVTGCDPKNTRWSYHNGGSWPVLLWMLTAACIKTGRPQIARRAIDLAEARMLKDCWPEYYDGKLGRYI  247 (298)
Q Consensus       168 sl~Pp~~d~~y~~~~~gd~~~rp~aYHnG~vWP~l~g~~~~Al~k~G~~~~A~~ll~~~~~~l~~~g~~E~FDg~tg~~~  247 (298)
                      .|+||+++++|++++++||+|.|++||||++||+|+|+++.|++|.|+.+.|++.++.+++++..++|+|||||++|+++
T Consensus       441 icyPaie~~EWri~tG~dpKN~PWSYHNGGsWP~Llw~~~aA~iK~gr~~lA~ral~~ae~rl~~d~WpEyyDGktGr~i  520 (571)
T PLN02973        441 VCYPAIESHEWRIVTGCDPKNTRWSYHNGGSWPVLLWLLTAACIKTGRPQIARRAIEVAEARLHKDHWPEYYDGKVGRYV  520 (571)
T ss_pred             eeccCcCCccceehhccCCCCCccceecCCCccHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCChhhcCCCCCcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccchhhHHHHHHHHHHHHhhcCCCccccccccccccccccccccCCCCC
Q 045990          248 GKQARKYQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQMKPVIRRSSSWNC  298 (298)
Q Consensus       248 G~~a~~~QAWSaA~~Lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (298)
                      |.+|+..||||+|++|.++++|+||+++.+++|+|+++.+|+++||+||.|
T Consensus       521 Gkqar~yQTWSiAG~LlA~~~L~~P~~~~~~~~~e~~~~~~~~~~~~~~~~  571 (571)
T PLN02973        521 GKQSRKNQTWSVAGYLVAKMMLEDPSHVGMVCLEEDKQMKPVMRRSNSWTC  571 (571)
T ss_pred             ceeccccCchHHHHHHHHHHHhhChhhcccccccccccccchhccccccCC
Confidence            999999999999999999999999999999999999999999999999998

>PLN03005 beta-fructofuranosidase Back     alignment and domain information
>PF12899 Glyco_hydro_100: Alkaline and neutral invertase; InterPro: IPR024746 This is a family of endo-alpha-N-acetylgalactosaminidases Back     alignment and domain information
>PLN02703 beta-fructofuranosidase Back     alignment and domain information
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT Back     alignment and domain information
>TIGR01531 glyc_debranch glycogen debranching enzymye Back     alignment and domain information
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative Back     alignment and domain information
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10137 alpha-glucosidase; Provisional Back     alignment and domain information
>PRK13271 treA trehalase; Provisional Back     alignment and domain information
>PRK13272 treA trehalase; Provisional Back     alignment and domain information
>PRK13270 treF trehalase; Provisional Back     alignment and domain information
>PLN02567 alpha,alpha-trehalase Back     alignment and domain information
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF03200 Glyco_hydro_63: Mannosyl oligosaccharide glucosidase; InterPro: IPR004888 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR01577 oligosac_amyl oligosaccharide amylase Back     alignment and domain information
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2161 consensus Glucosidase I [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG1626 TreA Neutral trehalase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide [] Back     alignment and domain information
>COG3459 Cellobiose phosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0602 consensus Neutral trehalase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase Back     alignment and domain information
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes Back     alignment and domain information
>PF06824 DUF1237: Protein of unknown function (DUF1237); InterPro: IPR008313 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PF00723 Glyco_hydro_15: Glycosyl hydrolases family 15; InterPro: IPR011613 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query298
1v7w_A807 Chitobiose phosphorylase; beta-sandwich, (alpha/al 8e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
3c68_A761 Uncharacterized protein YGJK; GH63, processing alp 6e-04
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A* Length = 807 Back     alignment and structure
 Score = 46.3 bits (109), Expect = 8e-06
 Identities = 32/189 (16%), Positives = 55/189 (29%), Gaps = 21/189 (11%)

Query: 119 SPARMDFRWFALGNCVAILSSLATPEQSMAIMDLIEARWEELVGEMPLKIAYPAIESHEW 178
           +  + + R     N +A+LS LA+ E+    MD ++       G      ++        
Sbjct: 567 TAQQQEGRVHLESNTLAVLSGLASQERGEQAMDAVDEHLFSPYGLHLNAPSFSTPNDDIG 626

Query: 179 RIVTGCDPKNTRWSYHNGGSWPVLLWMLTAACIKTGRPQIARRAIDLAEARMLKDCW--- 235
            + T            NG  +         A  K GR   A +  D        D     
Sbjct: 627 FV-TRVYQ----GVKENGAIFSHPNPWAWVAETKLGRGDRAMKFYDALNPYNQNDIIEKR 681

Query: 236 -------PEYYDGKLGRYIGKQARKYQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQMKP 288
                   ++  G+  +  G+    + T +      A         LG+ S      + P
Sbjct: 682 IAEPYSYVQFIMGRDHQDHGRANHPWLTGTSGWAYFAVTN----YILGVQSGFTGLSVDP 737

Query: 289 VIRRSSSWN 297
            I   S W 
Sbjct: 738 CI--PSDWP 744
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query298
2z07_A420 Putative uncharacterized protein TTHA0978; unchara 99.93
2jg0_A535 Periplasmic trehalase; family 37, hydrolase, inhib 99.93
3c68_A761 Uncharacterized protein YGJK; GH63, processing alp 99.89
3qde_A811 Cellobiose phosphorylase; cellulase, phosphate, tr 99.83
3rrs_A822 Cellobiose phosphorylase; GH94, alpha barrel, disa 99.8
1v7w_A807 Chitobiose phosphorylase; beta-sandwich, (alpha/al 99.78
3cih_A739 Putative alpha-rhamnosidase; structural genomics, 99.41
2okx_A956 Rhamnosidase B; alpha barrel, glycoside hydrolase 99.39
1lf6_A684 Glucoamylase; (alpha/alpha) barrel, 6 alpha-helica 99.13
1ulv_A 1020 Glucodextranase; GH family 15, (alpha-alpha)6-barr 98.94
2fba_A492 Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hy 98.27
2p0v_A489 Hypothetical protein BT3781; alpha-beta protein, s 98.15
1gai_A472 Glucoamylase-471; hydrolase, glycosidase, polysacc 98.03
3p2c_A463 Putative glycosyl hydrolase; structural genomics, 97.99
2vn4_A 599 Glucoamylase; hydrolase, carbohydrate binding, gly 97.89
3qt9_A427 Putative uncharacterized protein CPE0426; alpha-al 97.71
3qry_B426 Putative uncharacterized protein; alpha-alpha six 97.4
>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} Back     alignment and structure
Probab=99.93  E-value=1.1e-25  Score=217.19  Aligned_cols=185  Identities=18%  Similarity=0.181  Sum_probs=149.2

Q ss_pred             cceeehhHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHHHHhhhhchhcccccccccccchhhhHhhhccCCCC
Q 045990           18 GYPIEIQALFFMALRCALSLLKHDAEGKEFIERIVKRLHALSYHMRSYFWLDFQQLNDIYRYKTEEYSHTAVNKFNVIPD   97 (298)
Q Consensus        18 G~~vEinALwYnAL~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~fw~~~~~~~~~~~~~~e~~~~~a~n~~~i~~~   97 (298)
                      +.+||+||++|.|++.+++|++.++++   +.++.++++.+++.|++ ||.+.++.  .|++..                
T Consensus       232 ~~~vdlna~~~~~~~~la~la~~lg~~---a~~~~~~a~~~~~ai~~-~Wd~~~g~--~~d~~~----------------  289 (420)
T 2z07_A          232 VVDVGFNAILQRANRDLYALAVLLQED---PYEIEEWIVRGEVGLEA-LWDREAGF--YFSWDL----------------  289 (420)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHTTCC---CHHHHHHHHHHHHHHHH-TEETTTTE--ECCEET----------------
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHhCcc---HHHHHHHHHHHHHHHHH-hhCcccCe--eEeeeC----------------
Confidence            468899999999999999999996555   56677788888999999 99864442  222200                


Q ss_pred             CCCccccccccCCCCceeccccCCCcccchhcccchhhhhcCCCCHHHHHHHHHHHHHHHHHhh--cCCCCccccCCccC
Q 045990           98 SIPDWVFDFMPIRGGYFIGNVSPARMDFRWFALGNCVAILSSLATPEQSMAIMDLIEARWEELV--GEMPLKIAYPAIES  175 (298)
Q Consensus        98 ~ip~~l~~~~~~~~gyl~~~v~p~~~d~~~~a~gN~LaL~~~ll~~eq~~~Vv~~v~~~~~~Ll--t~~gLrsl~Pp~~d  175 (298)
                                 . +|    ..    .+  ..+..++++|.+++++++++++|++.+.    +++  +++|++|+++  .+
T Consensus       290 -----------~-~g----~~----~~--~~~~~~~~pL~~g~~~~~~a~~v~~~l~----~~~~~~~~gi~t~~~--~~  341 (420)
T 2z07_A          290 -----------V-AG----EP----IA--VKTSAGFLPLFAGTPHQGRASLLAQEAE----RWGEKARYLLPSVDP--TS  341 (420)
T ss_dssp             -----------T-TT----EE----CC--CCBGGGGTHHHHTCSCHHHHHHHHHHHH----HHTTTCSSSCBSBCT--TS
T ss_pred             -----------C-CC----Ce----ec--cccHHhHHHHHcCCCCHHHHHHHHHHHH----HHhccCCCCcCcCCC--cC
Confidence                       0 00    11    11  1456778899999999999999999984    677  8999999988  54


Q ss_pred             CCcceeccCCCCCCCCccccCCchhhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHccCCCcceeeCCCCCcCCcccchhh
Q 045990          176 HEWRIVTGCDPKNTRWSYHNGGSWPVLLWMLTAACIKTGRPQIARRAIDLAEARMLKDCWPEYYDGKLGRYIGKQARKYQ  255 (298)
Q Consensus       176 ~~y~~~~~gd~~~rp~aYHnG~vWP~l~g~~~~Al~k~G~~~~A~~ll~~~~~~l~~~g~~E~FDg~tg~~~G~~a~~~Q  255 (298)
                      +          .++|.+|||||+||++++++++|+.++|+.+.|.+++......+...+|.|+||+.+|.+.|   |..|
T Consensus       342 ~----------~y~~~~yw~gpvW~~~~~~~~~gL~~~G~~~~A~~l~~~~~~~~~~~~~~E~yd~~~g~~~g---~~~f  408 (420)
T 2z07_A          342 P----------FFEPGRYWRGPVWINVNWMVAEGFRDYGFAALAARLKADALALMEREGFREYYDPLTGQGRG---GEGF  408 (420)
T ss_dssp             T----------TCCTTSTTSSCBCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCSEEEECTTTCCEEE---EESC
T ss_pred             c----------ccCCcCCCCCCcchhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCeeeeeCCCCCCcCC---CCCC
Confidence            4          45566999999999999999999999999999999988877777777899999999988777   5699


Q ss_pred             HHHHHHHHHH
Q 045990          256 TWSIAGYLVA  265 (298)
Q Consensus       256 AWSaA~~Lr~  265 (298)
                      +||+|.+|.+
T Consensus       409 gWs~~~~l~l  418 (420)
T 2z07_A          409 SWSAALALFW  418 (420)
T ss_dssp             HHHHHHHHHH
T ss_pred             chHHHHHHHH
Confidence            9999998875
>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ; 1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A* 2jjb_A* 2wyn_A* Back     alignment and structure
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum} Back     alignment and structure
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A* Back     alignment and structure
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A* Back     alignment and structure
>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP} Back     alignment and structure
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A* Back     alignment and structure
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A* Back     alignment and structure
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A Back     alignment and structure
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8 Back     alignment and structure
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A* Back     alignment and structure
>3p2c_A Putative glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE PGE; 1.60A {Bacteroides ovatus} SCOP: a.102.1.8 PDB: 3on6_A* Back     alignment and structure
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A* Back     alignment and structure
>3qt9_A Putative uncharacterized protein CPE0426; alpha-alpha six fold, glycoside hydrolase, mannosidase, HYDR; HET: YDR; 2.05A {Clostridium perfringens} SCOP: a.102.1.8 PDB: 3qt3_A* 2nvp_A Back     alignment and structure
>3qry_B Putative uncharacterized protein; alpha-alpha six fold, glycoside hydrolase, mannosidase, 1- deoxymannojirimycin, hydrolase; HET: DMJ; 1.75A {Streptococcus pneumoniae} SCOP: a.102.1.0 PDB: 3qpf_A* 3qsp_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 298
d1v7wa1531 a.102.1.4 (A:271-801) Chitobiose phosphorylase Chb 3e-05
>d1v7wa1 a.102.1.4 (A:271-801) Chitobiose phosphorylase ChbP {Vibrio proteolyticus [TaxId: 671]} Length = 531 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Glycosyltransferase family 36 C-terminal domain
domain: Chitobiose phosphorylase ChbP
species: Vibrio proteolyticus [TaxId: 671]

 Score = 42.6 bits (99), Expect = 3e-05
 Identities = 29/183 (15%), Positives = 45/183 (24%), Gaps = 11/183 (6%)

Query: 56  HALSYHMRSYFWLDFQQLNDIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPIRGGYFI 115
            AL   +    +L   Q  + Y                                  G  I
Sbjct: 240 WALQEFIDLAKFLGKDQDVNTYTEMAANVREACETHLWDDEGGWYIRGLTKN----GDKI 295

Query: 116 GNVSPARMDFRWFALGNCVAILSSLATPEQSMAIMDLIEARWEELVGEMPLKIAYPAIES 175
           G       + R     N +A+LS LA+ E+    MD ++       G      ++     
Sbjct: 296 GTAQQ--QEGRVHLESNTLAVLSGLASQERGEQAMDAVDEHLFSPYGLHLNAPSFSTPND 353

Query: 176 HEWRIVTGCDPKNTRWSYHNGGSWPVLLWMLTAACIKTGRPQIARRAIDLAEARMLKDCW 235
               + T            NG  +         A  K GR   A +  D        D  
Sbjct: 354 DIGFV-TRVYQ----GVKENGAIFSHPNPWAWVAETKLGRGDRAMKFYDALNPYNQNDII 408

Query: 236 PEY 238
            + 
Sbjct: 409 EKR 411

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query298
d2jg0a1511 Periplasmic trehalase TreA {Escherichia coli [TaxI 99.79
d1lf6a1397 Bacterial glucoamylase, C-terminal domain {Thermoa 99.58
d1v7wa1531 Chitobiose phosphorylase ChbP {Vibrio proteolyticu 99.55
d1ulva1413 Glucodextranase, domain A {Arthrobacter globiformi 98.98
d2fbaa1492 Glucoamylase {Yeast (Saccharomycopsis fibuligera) 98.18
d1gaia_472 Glucoamylase {Aspergillus awamori, variant x100 [T 98.02
d2p0va1443 Hypothetical protein BT3781 {Bacteroides thetaiota 93.28
d2nvpa1426 Hypothetical protein CPF0428 {Clostridium perfring 92.97
>d2jg0a1 a.102.1.9 (A:37-547) Periplasmic trehalase TreA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Trehalase-like
domain: Periplasmic trehalase TreA
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1.3e-18  Score=171.05  Aligned_cols=191  Identities=14%  Similarity=0.138  Sum_probs=147.4

Q ss_pred             ceeehhHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHHHHhhhhchhcccccccccccchhhhHhhhccCCCCC
Q 045990           19 YPIEIQALFFMALRCALSLLKHDAEGKEFIERIVKRLHALSYHMRSYFWLDFQQLNDIYRYKTEEYSHTAVNKFNVIPDS   98 (298)
Q Consensus        19 ~~vEinALwYnAL~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~fw~~~~~~~~~~~~~~e~~~~~a~n~~~i~~~~   98 (298)
                      .||++|+++|.+.+.++++++. .++.+.+.++.+++..+++.|.+.||.+..+...-|+..++                
T Consensus       297 ~pVDLNsll~~~~~~La~la~~-lg~~~~a~~~~~~a~~~~~ai~~~lWd~e~g~~~Dyd~~~~----------------  359 (511)
T d2jg0a1         297 VPVDLNSLMFKMEKILARASKA-AGDNAMANQYETLANARQKGIEKYLWNDQQGWYADYDLKSH----------------  359 (511)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHHSEETTTTEECCEETTTT----------------
T ss_pred             ccccHHHHHHHHHHHHHHHHHH-hcchHhHHHHHHHHHHHHHHHHHHhccCccCeeEEEecCCC----------------
Confidence            5799999999999999999998 56777888899999999999999999985554222222111                


Q ss_pred             CCccccccccCCCCceeccccCCCcccchhcccchhhhhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCccccCCccCCCc
Q 045990           99 IPDWVFDFMPIRGGYFIGNVSPARMDFRWFALGNCVAILSSLATPEQSMAIMDLIEARWEELVGEMPLKIAYPAIESHEW  178 (298)
Q Consensus        99 ip~~l~~~~~~~~gyl~~~v~p~~~d~~~~a~gN~LaL~~~ll~~eq~~~Vv~~v~~~~~~Llt~~gLrsl~Pp~~d~~y  178 (298)
                                              -....++..|+++|.+++++++|++++++.+..   .+.++.|++|+.        
T Consensus       360 ------------------------~~~~~~~~~~~~PL~~g~~~~~~~~~~~~~l~~---~~~~~gGipt~~--------  404 (511)
T d2jg0a1         360 ------------------------KVRNQLTAAALFPLYVNAAAKDRANKMATATKT---HLLQPGGLNTTS--------  404 (511)
T ss_dssp             ------------------------EECCCCBGGGGHHHHTTCSCHHHHHHHHHHHHH---HTEETTEECSBS--------
T ss_pred             ------------------------CEEeeeccchhhHhhccCCCHHHHHHHHHHHHH---hhccCCCcCCCC--------
Confidence                                    011126677889999999999999999999864   688888887533        


Q ss_pred             ceeccCCCCCCCCccccCC-chhhhHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----ccCCCcceeeCCCCCcCCc-c-
Q 045990          179 RIVTGCDPKNTRWSYHNGG-SWPVLLWMLTAACIKTGRPQIARRAIDLAEARM-----LKDCWPEYYDGKLGRYIGK-Q-  250 (298)
Q Consensus       179 ~~~~~gd~~~rp~aYHnG~-vWP~l~g~~~~Al~k~G~~~~A~~ll~~~~~~l-----~~~g~~E~FDg~tg~~~G~-~-  250 (298)
                               ..+..||+|| +||.+++++++|+.++|..++|+++.....+..     ...++.|+||..++...|+ + 
T Consensus       405 ---------~~~~~yWrgPnvW~p~n~lii~gL~~yG~~e~A~~la~~~l~~~~~~~~~tg~~~EkYd~~~~g~~G~gge  475 (511)
T d2jg0a1         405 ---------VKSGQQWDAPNGWAPLQWVATEGLQNYGQKEVAMDISWHFLTNVQHTYDREKKLVEKYDVSTTGTGGGGGE  475 (511)
T ss_dssp             ---------CCCSSSSSTTEECHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHSSCBSCEETTSSSCBCCCSS
T ss_pred             ---------CCCCCCCCCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhCCceEEeeCCCCCCCCCCCCC
Confidence                     2345799999 999999999999999999999999877655443     2456999999876432222 2 


Q ss_pred             --cchhhHHHHHHHHHHHHhhc
Q 045990          251 --ARKYQTWSIAGYLVAKMMLE  270 (298)
Q Consensus       251 --a~~~QAWSaA~~Lr~~~~l~  270 (298)
                        ....|.||+|.+|.+.....
T Consensus       476 y~~q~gFGWTngv~L~ll~~~~  497 (511)
T d2jg0a1         476 YPLQDGFGWTNGVTLKMLDLIC  497 (511)
T ss_dssp             SCCCBSCHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCchHHHHHHHHHHhhC
Confidence              12357899999999888764
>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]} Back     information, alignment and structure
>d1v7wa1 a.102.1.4 (A:271-801) Chitobiose phosphorylase ChbP {Vibrio proteolyticus [TaxId: 671]} Back     information, alignment and structure
>d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d2fbaa1 a.102.1.1 (A:1-492) Glucoamylase {Yeast (Saccharomycopsis fibuligera) [TaxId: 4944]} Back     information, alignment and structure
>d1gaia_ a.102.1.1 (A:) Glucoamylase {Aspergillus awamori, variant x100 [TaxId: 105351]} Back     information, alignment and structure
>d2p0va1 a.102.1.8 (A:39-481) Hypothetical protein BT3781 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2nvpa1 a.102.1.8 (A:2-427) Hypothetical protein CPF0428 {Clostridium perfringens [TaxId: 1502]} Back     information, alignment and structure