Citrus Sinensis ID: 046000

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470
Protein Sequence
MLFLGAGLHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN
Secondary Structure (PSIPRED)
ccEEcccccccccccEEEccccccEEEcccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEEccccccEEEcccccccccccccEEEcccccccccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccEEEEEccccccccccccEEEcccccccccccHHHHHccccccEEEccccccEEcccccccccccccEEEcccccccEEccccccccccccEEEccccEEEEEccccccccccccEEEccccEEEEEccccHHccccccEEEcccccccccccHHHHHHHccccEEEccccccEEcccccccccccccEEEcccccccccccccccccccccEEcccccccccccHHHHccccccEEEccccccccccHHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHcccccccEEEcccccccccccHHHHHEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHHHccccccEEEEccccccccccccccccHHHcccccccEEEEccccccccccHHHHHccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHHHHHHcccEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHHccHHHHHEEEcccccccccccHHHcccccccEEEEccccccccccHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcc
Coil and Loop (DISEMBL)
mlflgaglhklknlealdlsfnningtvesQESFELNLAknnigghllDCLNNMTRLKVLDtsfnqlsgslpSVIVNLASVEyldlsnsyfegtfpisslanhskLKVLRLSSRNnnmlqlktenflptfqlkhdlkyldlshnnlagdfpawilqnnTKLEVLCLtnnsftgnlqlphskhdflhhldvssnnftgklpqdkgIILQKLLYIDMAnnrfegnlpssigdmktLTFLHLsknnfsgeLSTLFTGCVSLWfldrshnnfhdqifpkymnlTRLWFLYLdnnkfsgkiedgllksnqlkeldmsnnmlsghipHWIANFSSYLEVLLMSKnflkgnipmqllnhgslqllsvsenclsgfmtssfslSSLVHLYVQRndlsgtipnalfrssklmtldlrdngfsgiisdqinesSNLRVLLLRGnylegpisnqfcqlrrlgvmdlshnringsipscftn
Flexible Loop (DISEMBL)
MLFLGAGLHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSgiisdqinesSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLshnringsipscftn
Low Complexity Region (SEG)
MLFLGAGLHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENClsgfmtssfslsslVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN
Disordered region (IsUnstruct)
**FLGAGLHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRIN*********
Disordered Region (DISOPRED)
MLFLGAGLHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN
Disordered Region (DISEMBL)
MLFLGAGLHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN
Disordered Region (DISPRO)
MLFLGAGLHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIP*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLFLGAGLHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	470	2.2.26 [Sep-21-2011]
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.946	0.425	0.323	4e-43
P47735	999	Receptor-like protein kin	no	no	0.961	0.452	0.331	6e-42
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.965	0.363	0.317	7e-42
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.942	0.437	0.313	2e-41
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.953	0.357	0.323	8e-41
Q6XAT2	967	LRR receptor-like serine/	no	no	0.895	0.435	0.313	3e-40
Q42371	976	LRR receptor-like serine/	no	no	0.891	0.429	0.324	5e-40
Q9LRT1	1016	Probably inactive leucine	no	no	0.953	0.440	0.326	2e-39
C0LGW6	966	LRR receptor-like serine/	no	no	0.906	0.440	0.324	4e-39
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.961	0.415	0.311	5e-39

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  176 bits (445), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 149/461 (32%), Positives = 224/461 (48%), Gaps = 16/461 (3%)

Query: 11  LKNLEALDLSFNNINGTVESQES-----FELNLAKNNIGGHLLDCLNNMTRLKVLDTSFN 65
           L  L  L L  N+++G++ S+        EL L +NN+ G +     N+  + +L+   N
Sbjct: 213 LTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFEN 272

Query: 66  QLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTEN 125
           QLSG +P  I N+ +++ L L  +   G  P S+L N   L VL L       L     +
Sbjct: 273 QLSGEIPPEIGNMTALDTLSLHTNKLTGPIP-STLGNIKTLAVLHL------YLNQLNGS 325

Query: 126 FLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFL 185
             P       +  L++S N L G  P       T LE L L +N  +G +    +    L
Sbjct: 326 IPPELGEMESMIDLEISENKLTGPVPDS-FGKLTALEWLFLRDNQLSGPIPPGIANSTEL 384

Query: 186 HHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFS 245
             L + +NNFTG LP D      KL  + + +N FEG +P S+ D K+L  +    N+FS
Sbjct: 385 TVLQLDTNNFTGFLP-DTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFS 443

Query: 246 GELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQ 305
           G++S  F    +L F+D S+NNFH Q+   +    +L    L NN  +G I   +    Q
Sbjct: 444 GDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQ 503

Query: 306 LKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCL 365
           L +LD+S+N ++G +P  I+N +  +  L ++ N L G IP  +    +L+ L +S N  
Sbjct: 504 LSQLDLSSNRITGELPESISNINR-ISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRF 562

Query: 366 SGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESS 424
           S  +  +  +L  L ++ + RNDL  TIP  L + S+L  LDL  N   G IS Q     
Sbjct: 563 SSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSLQ 622

Query: 425 NLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIP 465
           NL  L L  N L G I   F  +  L  +D+SHN + G IP
Sbjct: 623 NLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIP 663

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|P47735|RLK5_ARATH Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1

 Score =  172 bits (435), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 161/486 (33%), Positives = 239/486 (49%), Gaps = 34/486 (6%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESFE-------LNLAKNNIGGHLLDCLN-NMTRLKV 59
           L  L +L +L L  N+ING++ S + F+       L+L++N + G +   L  N+  LK 
Sbjct: 85  LCHLPSLHSLSLYNNSINGSL-SADDFDTCHNLISLDLSENLLVGSIPKSLPFNLPNLKF 143

Query: 60  LDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLS------- 112
           L+ S N LS ++PS       +E L+L+ ++  GT P +SL N + LK L+L+       
Sbjct: 144 LEISGNNLSDTIPSSFGEFRKLESLNLAGNFLSGTIP-ASLGNVTTLKELKLAYNLFSPS 202

Query: 113 ---SRNNNMLQLKT---------ENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTK 160
              S+  N+ +L+              P+      L  LDL+ N L G  P+WI Q  T 
Sbjct: 203 QIPSQLGNLTELQVLWLAGCNLVGPIPPSLSRLTSLVNLDLTFNQLTGSIPSWITQLKT- 261

Query: 161 LEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRF 220
           +E + L NNSF+G L         L   D S N  TGK+P +    L  L  +++  N  
Sbjct: 262 VEQIELFNNSFSGELPESMGNMTTLKRFDASMNKLTGKIPDNL--NLLNLESLNLFENML 319

Query: 221 EGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLT 280
           EG LP SI   KTL+ L L  N  +G L +       L ++D S+N F  +I        
Sbjct: 320 EGPLPESITRSKTLSELKLFNNRLTGVLPSQLGANSPLQYVDLSYNRFSGEIPANVCGEG 379

Query: 281 RLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNF 340
           +L +L L +N FSG+I + L K   L  + +SNN LSG IPH        L +L +S N 
Sbjct: 380 KLEYLILIDNSFSGEISNNLGKCKSLTRVRLSNNKLSGQIPHGFWGLPR-LSLLELSDNS 438

Query: 341 LKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRS 399
             G+IP  ++   +L  L +S+N  SG + +   SL+ ++ +    ND SG IP +L + 
Sbjct: 439 FTGSIPKTIIGAKNLSNLRISKNRFSGSIPNEIGSLNGIIEISGAENDFSGEIPESLVKL 498

Query: 400 SKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNR 459
            +L  LDL  N  SG I  ++    NL  L L  N+L G I  +   L  L  +DLS N+
Sbjct: 499 KQLSRLDLSKNQLSGEIPRELRGWKNLNELNLANNHLSGEIPKEVGILPVLNYLDLSSNQ 558

Query: 460 INGSIP 465
            +G IP
Sbjct: 559 FSGEIP 564

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates that controls floral organ abscission. May interact with the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) ligands family.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  172 bits (435), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 164/516 (31%), Positives = 236/516 (45%), Gaps = 62/516 (12%)

Query: 6   AGLHKLKNLEALDLSFNNINGTVESQ-----ESFELNLAKNNIGGHLLDCLNNMTRLKVL 60
           A L +L+NLE L+L+ N++ G + SQ     +   L+L  N + G +   L ++  L+ L
Sbjct: 233 AELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTL 292

Query: 61  DTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQ 120
           D S N L+G +P    N++ +  L L+N++  G+ P S  +N++ L+ L LS       Q
Sbjct: 293 DLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGT-----Q 347

Query: 121 LKTENFLPTFQLK-HDLKYLDLSHNNLAGDFPAWILQ----------------------- 156
           L  E  +P    K   LK LDLS+N+LAG  P  + +                       
Sbjct: 348 LSGE--IPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSIS 405

Query: 157 NNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMA 216
           N T L+ L L +N+  G L    S    L  L +  N F+G++PQ+ G     L  IDM 
Sbjct: 406 NLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNC-TSLKMIDMF 464

Query: 217 NNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKY 276
            N FEG +P SIG +K L  LHL +N   G L      C  L  LD + N     I   +
Sbjct: 465 GNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSF 524

Query: 277 MNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYL----- 331
             L  L  L L NN   G + D L+    L  +++S+N L+G I H +   SSYL     
Sbjct: 525 GFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTI-HPLCGSSSYLSFDVT 583

Query: 332 ------------------EVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF 373
                             + L + KN L G IP  L     L LL +S N L+G +    
Sbjct: 584 NNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQL 643

Query: 374 SL-SSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLR 432
            L   L H+ +  N LSG IP  L + S+L  L L  N F   +  ++   + L VL L 
Sbjct: 644 VLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLD 703

Query: 433 GNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCF 468
           GN L G I  +   L  L V++L  N+ +GS+P   
Sbjct: 704 GNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAM 739

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score =  170 bits (430), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 151/481 (31%), Positives = 235/481 (48%), Gaps = 38/481 (7%)

Query: 14  LEALDLSFNNINGTV-----ESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLS 68
           L+++D+S N+ +G++     ES     LN + NN+ G+L + L N+  L+VLD   N   
Sbjct: 118 LKSIDISQNSFSGSLFLFSNESLGLVHLNASGNNLSGNLTEDLGNLVSLEVLDLRGNFFQ 177

Query: 69  GSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLP 128
           GSLPS   NL  + +L LS +   G  P S L     L+   L        + K     P
Sbjct: 178 GSLPSSFKNLQKLRFLGLSGNNLTGELP-SVLGQLPSLETAILGYN-----EFKGP-IPP 230

Query: 129 TFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHL 188
            F   + LKYLDL+   L+G+ P+  L     LE L L  N+FTG +         L  L
Sbjct: 231 EFGNINSLKYLDLAIGKLSGEIPSE-LGKLKSLETLLLYENNFTGTIPREIGSITTLKVL 289

Query: 189 DVSSNNFTGKLPQD-----------------KGII------LQKLLYIDMANNRFEGNLP 225
           D S N  TG++P +                  G I      L +L  +++ NN   G LP
Sbjct: 290 DFSDNALTGEIPMEITKLKNLQLLNLMRNKLSGSIPPAISSLAQLQVLELWNNTLSGELP 349

Query: 226 SSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFL 285
           S +G    L +L +S N+FSGE+ +      +L  L   +N F  QI         L  +
Sbjct: 350 SDLGKNSPLQWLDVSSNSFSGEIPSTLCNKGNLTKLILFNNTFTGQIPATLSTCQSLVRV 409

Query: 286 YLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNI 345
            + NN  +G I  G  K  +L+ L+++ N LSG IP  I++ S  L  +  S+N ++ ++
Sbjct: 410 RMQNNLLNGSIPIGFGKLEKLQRLELAGNRLSGGIPGDISD-SVSLSFIDFSRNQIRSSL 468

Query: 346 PMQLLNHGSLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRSSKLMT 404
           P  +L+  +LQ   V++N +SG +   F    SL +L +  N L+GTIP+++    KL++
Sbjct: 469 PSTILSIHNLQAFLVADNFISGEVPDQFQDCPSLSNLDLSSNTLTGTIPSSIASCEKLVS 528

Query: 405 LDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSI 464
           L+LR+N  +G I  QI   S L VL L  N L G +         L ++++S+N++ G +
Sbjct: 529 LNLRNNNLTGEIPRQITTMSALAVLDLSNNSLTGVLPESIGTSPALELLNVSYNKLTGPV 588

Query: 465 P 465
           P
Sbjct: 589 P 589

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  168 bits (426), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 152/470 (32%), Positives = 224/470 (47%), Gaps = 22/470 (4%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESFELN------LAKNNIGGHLLD--CLNNMTRLKV 59
           L +L NL+ LDLS NN+ G +  +E + +N      LAKN + G L    C NN T LK 
Sbjct: 284 LTELANLQTLDLSSNNLTGVIH-EEFWRMNQLEFLVLAKNRLSGSLPKTICSNN-TSLKQ 341

Query: 60  LDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNML 119
           L  S  QLSG +P+ I N  S++ LDLSN+   G  P  SL    +L  L L   NNN L
Sbjct: 342 LFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIP-DSLFQLVELTNLYL---NNNSL 397

Query: 120 QLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPH 179
           +    + +       +L+   L HNNL G  P  I     KLE++ L  N F+G + +  
Sbjct: 398 EGTLSSSISNLT---NLQEFTLYHNNLEGKVPKEI-GFLGKLEIMYLYENRFSGEMPVEI 453

Query: 180 SKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHL 239
                L  +D   N  +G++P   G  L+ L  + +  N   GN+P+S+G+   +T + L
Sbjct: 454 GNCTRLQEIDWYGNRLSGEIPSSIGR-LKDLTRLHLRENELVGNIPASLGNCHQMTVIDL 512

Query: 240 SKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDG 299
           + N  SG + + F    +L      +N+    +    +NL  L  +   +NKF+G I   
Sbjct: 513 ADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISP- 571

Query: 300 LLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLS 359
           L  S+     D++ N   G IP  +   S+ L+ L + KN   G IP        L LL 
Sbjct: 572 LCGSSSYLSFDVTENGFEGDIPLELGK-STNLDRLRLGKNQFTGRIPRTFGKISELSLLD 630

Query: 360 VSENCLSGFMTSSFSL-SSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISD 418
           +S N LSG +     L   L H+ +  N LSG IP  L +   L  L L  N F G +  
Sbjct: 631 ISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPT 690

Query: 419 QINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCF 468
           +I   +N+  L L GN L G I  +   L+ L  ++L  N+++G +PS  
Sbjct: 691 EIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTI 740

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score =  166 bits (420), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 145/463 (31%), Positives = 225/463 (48%), Gaps = 42/463 (9%)

Query: 36  LNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTF 95
           LNL+  N+GG +   L ++  L+ +D   N+L G +P  I N  S+ Y+D S +   G  
Sbjct: 78  LNLSNLNLGGEISSALGDLMNLQSIDLQGNKLGGQIPDEIGNCVSLAYVDFSTNLLFGDI 137

Query: 96  PISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWIL 155
           P S     SKLK L   +  NN L   T     T     +LK LDL+ N L G+ P  +L
Sbjct: 138 PFSI----SKLKQLEFLNLKNNQL---TGPIPATLTQIPNLKTLDLARNQLTGEIPR-LL 189

Query: 156 QNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLP--------------- 200
             N  L+ L L  N  TG L     +   L + DV  NN TG +P               
Sbjct: 190 YWNEVLQYLGLRGNMLTGTLSPDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFEILDVS 249

Query: 201 --QDKGIILQKLLYIDMAN-----NRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTL-- 251
             Q  G+I   + ++ +A      N+  G +P  IG M+ L  L LS N  +G +  +  
Sbjct: 250 YNQITGVIPYNIGFLQVATLSLQGNKLTGRIPEVIGLMQALAVLDLSDNELTGPIPPILG 309

Query: 252 ---FTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKE 308
              FTG + L       N    QI P+  N++RL +L L++N+  GKI   L K  QL E
Sbjct: 310 NLSFTGKLYL-----HGNKLTGQIPPELGNMSRLSYLQLNDNELVGKIPPELGKLEQLFE 364

Query: 309 LDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGF 368
           L+++NN L G IP  I++ ++ L    +  NFL G +P++  N GSL  L++S N   G 
Sbjct: 365 LNLANNNLVGLIPSNISSCAA-LNQFNVHGNFLSGAVPLEFRNLGSLTYLNLSSNSFKGK 423

Query: 369 MTSSFS-LSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLR 427
           + +    + +L  L +  N+ SG+IP  L     L+ L+L  N  +G +  +     +++
Sbjct: 424 IPAELGHIINLDTLDLSGNNFSGSIPLTLGDLEHLLILNLSRNHLNGTLPAEFGNLRSIQ 483

Query: 428 VLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
           ++ +  N+L G I  +  QL+ +  + L++N+I+G IP   TN
Sbjct: 484 IIDVSFNFLAGVIPTELGQLQNINSLILNNNKIHGKIPDQLTN 526

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score =  166 bits (419), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 140/431 (32%), Positives = 218/431 (50%), Gaps = 12/431 (2%)

Query: 36  LNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTF 95
           LNL+  N+ G +   + ++  L  +D   N+LSG +P  I + +S++ LDLS +   G  
Sbjct: 73  LNLSDLNLDGEISPAIGDLKSLLSIDLRGNRLSGQIPDEIGDCSSLQNLDLSFNELSGDI 132

Query: 96  PISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWIL 155
           P S     SKLK L      NN L     + L       +LK LDL+ N L+G+ P  I 
Sbjct: 133 PFSI----SKLKQLEQLILKNNQLIGPIPSTLSQIP---NLKILDLAQNKLSGEIPRLIY 185

Query: 156 QNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDM 215
            N   L+ L L  N+  GN+     +   L + DV +N+ TG +P+  G        +D+
Sbjct: 186 WNEV-LQYLGLRGNNLVGNISPDLCQLTGLWYFDVRNNSLTGSIPETIGNC-TAFQVLDL 243

Query: 216 ANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPK 275
           + N+  G +P  IG ++  T L L  N  SG++ ++     +L  LD S N     I P 
Sbjct: 244 SYNQLTGEIPFDIGFLQVAT-LSLQGNQLSGKIPSVIGLMQALAVLDLSGNLLSGSIPPI 302

Query: 276 YMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLL 335
             NLT    LYL +NK +G I   L   ++L  L++++N L+GHIP  +   +   + L 
Sbjct: 303 LGNLTFTEKLYLHSNKLTGSIPPELGNMSKLHYLELNDNHLTGHIPPELGKLTDLFD-LN 361

Query: 336 MSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPN 394
           ++ N L+G IP  L +  +L  L+V  N  SG +  +F  L S+ +L +  N++ G IP 
Sbjct: 362 VANNDLEGPIPDHLSSCTNLNSLNVHGNKFSGTIPRAFQKLESMTYLNLSSNNIKGPIPV 421

Query: 395 ALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMD 454
            L R   L TLDL +N  +GII   + +  +L  + L  N++ G +   F  LR +  +D
Sbjct: 422 ELSRIGNLDTLDLSNNKINGIIPSSLGDLEHLLKMNLSRNHITGVVPGDFGNLRSIMEID 481

Query: 455 LSHNRINGSIP 465
           LS+N I+G IP
Sbjct: 482 LSNNDISGPIP 492

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score =  163 bits (413), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 236/468 (50%), Gaps = 20/468 (4%)

Query: 7   GLHKLKNLEALDLSFNNINGTVESQES----FELNLAKNNIGGHLLDCLNNMTRLKVLDT 62
           G+ KL+ L+ L LS NN  G + +  +     +L+L+ NN+ G +   L ++T L+ LD 
Sbjct: 96  GIQKLQRLKVLSLSNNNFTGNINALSNNNHLQKLDLSHNNLSGQIPSSLGSITSLQHLDL 155

Query: 63  SFNQLSGSLPSVIVN-LASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQL 121
           + N  SG+L   + N  +S+ YL LS+++ EG  P S+L   S L  L LS RN      
Sbjct: 156 TGNSFSGTLSDDLFNNCSSLRYLSLSHNHLEGQIP-STLFRCSVLNSLNLS-RNRFS--- 210

Query: 122 KTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSK 181
              +F+        L+ LDLS N+L+G  P  IL  +  L+ L L  N F+G L      
Sbjct: 211 GNPSFVSGIWRLERLRALDLSSNSLSGSIPLGILSLHN-LKELQLQRNQFSGALPSDIGL 269

Query: 182 HDFLHHLDVSSNNFTGKLPQDKGIILQKLL---YIDMANNRFEGNLPSSIGDMKTLTFLH 238
              L+ +D+SSN+F+G+LP+     LQKL    + D++NN   G+ P  IGDM  L  L 
Sbjct: 270 CPHLNRVDLSSNHFSGELPR----TLQKLKSLNHFDVSNNLLSGDFPPWIGDMTGLVHLD 325

Query: 239 LSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIED 298
            S N  +G+L +  +   SL  L+ S N    ++     +   L  + L  N FSG I D
Sbjct: 326 FSSNELTGKLPSSISNLRSLKDLNLSENKLSGEVPESLESCKELMIVQLKGNDFSGNIPD 385

Query: 299 GLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLL 358
           G      L+E+D S N L+G IP   +     L  L +S N L G+IP ++     ++ L
Sbjct: 386 GFFDLG-LQEMDFSGNGLTGSIPRGSSRLFESLIRLDLSHNSLTGSIPGEVGLFIHMRYL 444

Query: 359 SVSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIIS 417
           ++S N  +  +      L +L  L ++ + L G++P  +  S  L  L L  N  +G I 
Sbjct: 445 NLSWNHFNTRVPPEIEFLQNLTVLDLRNSALIGSVPADICESQSLQILQLDGNSLTGSIP 504

Query: 418 DQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIP 465
           + I   S+L++L L  N L GPI      L+ L ++ L  N+++G IP
Sbjct: 505 EGIGNCSSLKLLSLSHNNLTGPIPKSLSNLQELKILKLEANKLSGEIP 552

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1

 Score =  162 bits (411), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 142/438 (32%), Positives = 213/438 (48%), Gaps = 12/438 (2%)

Query: 30  SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNS 89
           S     LNL+  N+GG +   + ++  L+ +D   N+L+G +P  I N AS+ YLDLS +
Sbjct: 70  SYSVVSLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLAGQIPDEIGNCASLVYLDLSEN 129

Query: 90  YFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGD 149
              G  P S     SKLK L   +  NN L   T     T     +LK LDL+ N+L G+
Sbjct: 130 LLYGDIPFSI----SKLKQLETLNLKNNQL---TGPVPATLTQIPNLKRLDLAGNHLTGE 182

Query: 150 FPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQK 209
             + +L  N  L+ L L  N  TG L     +   L + DV  NN TG +P+  G     
Sbjct: 183 I-SRLLYWNEVLQYLGLRGNMLTGTLSSDMCQLTGLWYFDVRGNNLTGTIPESIGNC-TS 240

Query: 210 LLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFH 269
              +D++ N+  G +P +IG ++  T L L  N  +G +  +     +L  LD S N   
Sbjct: 241 FQILDISYNQITGEIPYNIGFLQVAT-LSLQGNRLTGRIPEVIGLMQALAVLDLSDNELV 299

Query: 270 DQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSS 329
             I P   NL+    LYL  N  +G I   L   ++L  L +++N L G IP  +     
Sbjct: 300 GPIPPILGNLSFTGKLYLHGNMLTGPIPSELGNMSRLSYLQLNDNKLVGTIPPELGKLEQ 359

Query: 330 YLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDL 388
             E L ++ N L G IP  + +  +L   +V  N LSG +  +F +L SL +L +  N+ 
Sbjct: 360 LFE-LNLANNRLVGPIPSNISSCAALNQFNVHGNLLSGSIPLAFRNLGSLTYLNLSSNNF 418

Query: 389 SGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLR 448
            G IP  L     L  LDL  N FSG I   + +  +L +L L  N+L G +  +F  LR
Sbjct: 419 KGKIPVELGHIINLDKLDLSGNNFSGSIPLTLGDLEHLLILNLSRNHLSGQLPAEFGNLR 478

Query: 449 RLGVMDLSHNRINGSIPS 466
            + ++D+S N ++G IP+
Sbjct: 479 SIQMIDVSFNLLSGVIPT 496

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  162 bits (410), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 155/497 (31%), Positives = 236/497 (47%), Gaps = 45/497 (9%)

Query: 4   LGAGLHKLKNLEALDLSFNNINGTVESQ----ESFE-LNLAKNNIGGHLLDCLNNMTRLK 58
           LG+ + +LK+L  LDLS N+ +G + S      S E L+L+ N+  G + D   ++  L 
Sbjct: 92  LGSEIGELKSLVTLDLSLNSFSGLLPSTLGNCTSLEYLDLSNNDFSGEVPDIFGSLQNLT 151

Query: 59  VLDTSFNQLSGSLPSVIVNLASVEYLDLSNSY--FEGTFPISSLANHSKLKVLRLSSRNN 116
            L    N LSG +P+ +  L  +E +DL  SY    GT P   L N SKL+ L L   NN
Sbjct: 152 FLYLDRNNLSGLIPASVGGL--IELVDLRMSYNNLSGTIP-ELLGNCSKLEYLAL---NN 205

Query: 117 NMLQLKTENFLP-TFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNL 175
           N    K    LP +  L  +L  L +S+N+L G    +   N  KL  L L+ N F G +
Sbjct: 206 N----KLNGSLPASLYLLENLGELFVSNNSLGGRL-HFGSSNCKKLVSLDLSFNDFQGGV 260

Query: 176 QLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLT 235
                    LH L +   N TG +P   G+ L+K+  ID+++NR  GN+P  +G+  +L 
Sbjct: 261 PPEIGNCSSLHSLVMVKCNLTGTIPSSMGM-LRKVSVIDLSDNRLSGNIPQELGNCSSLE 319

Query: 236 FLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQI---FPKYMNLTRLWF-------- 284
            L L+ N   GE+    +    L  L+   N    +I     K  +LT++          
Sbjct: 320 TLKLNDNQLQGEIPPALSKLKKLQSLELFFNKLSGEIPIGIWKIQSLTQMLVYNNTLTGE 379

Query: 285 -------------LYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYL 331
                        L L NN F G I   L  +  L+E+D+  N  +G IP  + +    L
Sbjct: 380 LPVEVTQLKHLKKLTLFNNGFYGDIPMSLGLNRSLEEVDLLGNRFTGEIPPHLCH-GQKL 438

Query: 332 EVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGT 391
            + ++  N L G IP  +    +L+ + + +N LSG +       SL ++ +  N   G+
Sbjct: 439 RLFILGSNQLHGKIPASIRQCKTLERVRLEDNKLSGVLPEFPESLSLSYVNLGSNSFEGS 498

Query: 392 IPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLG 451
           IP +L     L+T+DL  N  +G+I  ++    +L +L L  NYLEGP+ +Q     RL 
Sbjct: 499 IPRSLGSCKNLLTIDLSQNKLTGLIPPELGNLQSLGLLNLSHNYLEGPLPSQLSGCARLL 558

Query: 452 VMDLSHNRINGSIPSCF 468
             D+  N +NGSIPS F
Sbjct: 559 YFDVGSNSLNGSIPSSF 575

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	470
358345471	933	Receptor kinase [Medicago truncatula] gi	0.919	0.463	0.496	1e-100
12324907	910	putative disease resistance protein; 468	0.982	0.507	0.447	2e-95
297842171	966	leucine-rich repeat family protein [Arab	0.972	0.473	0.446	4e-95
15221162	965	receptor like protein 15 [Arabidopsis th	0.972	0.473	0.436	4e-94
255553269	2793	receptor-kinase, putative [Ricinus commu	0.904	0.152	0.453	1e-89
449491173	2349	PREDICTED: uncharacterized protein LOC10	0.891	0.178	0.429	4e-89
186495296	1000	receptor like protein 13 [Arabidopsis th	0.970	0.456	0.435	9e-89
12323814	1068	disease resistance protein, putative; 11	0.970	0.426	0.435	1e-88
296084515	798	unnamed protein product [Vitis vinifera]	0.965	0.568	0.445	5e-88
359484714	862	PREDICTED: probable LRR receptor-like se	0.978	0.533	0.432	3e-87

>gi|358345471|ref|XP_003636801.1| Receptor kinase [Medicago truncatula] gi|355502736|gb|AES83939.1| Receptor kinase [Medicago truncatula]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 231/465 (49%), Positives = 296/465 (63%), Gaps = 33/465 (7%)

Query: 35  ELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGT 94
           EL+L++N + G+   CL N+T L+VLD S N   G++PS I++L S+EYL L ++ F+G 
Sbjct: 186 ELDLSRNGMSGYFPQCLRNLTSLRVLDLSSNNFVGNIPSFIISLKSLEYLSLFDTNFDGI 245

Query: 95  FPISSLANHSKLKVLRLSSRNNNMLQLKTE---NFLPTFQLK------------------ 133
           F  SSL NHSKL+V  LS + NN L ++TE   ++ PTFQLK                  
Sbjct: 246 FSFSSLNNHSKLEVFLLSPKTNN-LYVETEESPSWHPTFQLKVLQLRNCFLNSKRDGTFP 304

Query: 134 ------HDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHH 187
                 H+L+ LDLSHN L+G+FP+WIL+NNTKLE L L NNSFTG L+LP  KH  L  
Sbjct: 305 TFLLYQHELQLLDLSHNKLSGNFPSWILENNTKLETLYLMNNSFTGTLELPTFKHGLLD- 363

Query: 188 LDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGE 247
           L +S+N   G+L +D G I   L Y++++ N FEG LPSSIG+M+T+  L LS NNFSGE
Sbjct: 364 LQISNNKIGGQLQEDIGKIFPNLYYVNLSKNSFEGILPSSIGEMQTIRTLDLSNNNFSGE 423

Query: 248 LST-LFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQL 306
           LS+ L +   SL  L  SHN+FH  + P   NLTRL +LYL+NN FSG IEDG+  ++ L
Sbjct: 424 LSSHLISNLTSLRLLRLSHNSFHGLV-PLLSNLTRLNWLYLNNNSFSGVIEDGVSNNSSL 482

Query: 307 KELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLS 366
             LD+SNNMLSG IP WI  F+  L VL +SKN L+G IP +L N  SL  L +SEN LS
Sbjct: 483 FSLDISNNMLSGRIPRWIGRFTK-LSVLSLSKNRLQGEIPNELCNLISLSYLDLSENNLS 541

Query: 367 GFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSN 425
            F+   F     +  LY+Q+N L G IP A  + +KL +LDLRDN F G I   IN  S 
Sbjct: 542 DFLPYCFKNFKYMKFLYLQKNALQGNIPYAFSQLTKLTSLDLRDNNFFGNIPQWINRLSK 601

Query: 426 LRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
           LRVLLL GN L GPI    C+L  + +MDLSHN IN +IP C  N
Sbjct: 602 LRVLLLAGNKLTGPIPIYVCELEHVRIMDLSHNWINETIPPCIKN 646

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12324907|gb|AAG52409.1|AC020579_11 putative disease resistance protein; 46848-50365 [Arabidopsis thaliana]

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 221/494 (44%), Positives = 305/494 (61%), Gaps = 32/494 (6%)

Query: 3   FLGAGLHKLKNLEALDLSFNNINGTVESQESFELN------LAKNNIGGHLLDCLNNMTR 56
           F    L  L NLE LDLS N  NG++  Q   ELN      L++N + GHL  CL ++T 
Sbjct: 155 FPAKELRDLTNLELLDLSRNRFNGSIPIQGICELNNMQELDLSQNKLVGHLPSCLTSLTG 214

Query: 57  LKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNN 116
           L+VLD S N+L+G++PS + +L S+EYL L ++ FEG+F   SLAN S L VL+L S+++
Sbjct: 215 LRVLDLSSNKLTGTVPSSLGSLQSLEYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSS 274

Query: 117 NMLQLKTENFLPTFQL-------------------KHDLKYLDLSHNNLAGDFPAWILQN 157
           ++  L   ++ P FQL                   + DL+++DLS NN++G  P+W+L N
Sbjct: 275 SLQVLSESSWKPKFQLSVIALRSCNMEKVPHFLLHQKDLRHVDLSDNNISGKLPSWLLAN 334

Query: 158 NTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMAN 217
           NTKL+VL L NN FT + Q+P S H+ L  LDVS+N+F    P++ G I   L Y++ + 
Sbjct: 335 NTKLKVLLLQNNLFT-SFQIPKSAHNLL-FLDVSANDFNHLFPENIGWIFPHLRYLNTSK 392

Query: 218 NRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFT-GCVSLWFLDRSHNNFHDQIFPKY 276
           N F+ NLPSS+G+M  + ++ LS+N+F G L   F  GC S+  L  SHN    +IFP+ 
Sbjct: 393 NNFQENLPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPES 452

Query: 277 MNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLM 336
            N T +  L++DNN F+GKI  GL     L+ LDMSNN L+G IP WI    S L  LL+
Sbjct: 453 TNFTNILGLFMDNNLFTGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGELPS-LTALLI 511

Query: 337 SKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNAL 396
           S NFLKG+IPM L N  SLQLL +S N LSG +       + V L +Q N LSGTIP+ L
Sbjct: 512 SDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTL 571

Query: 397 FRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLS 456
             + ++  LDLR+N FSG I + IN   N+ +LLLRGN   G I +Q C L  + ++DLS
Sbjct: 572 LANVEI--LDLRNNRFSGKIPEFIN-IQNISILLLRGNNFTGQIPHQLCGLSNIQLLDLS 628

Query: 457 HNRINGSIPSCFTN 470
           +NR+NG+IPSC +N
Sbjct: 629 NNRLNGTIPSCLSN 642

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842171|ref|XP_002888967.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297334808|gb|EFH65226.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  354 bits (909), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 224/502 (44%), Positives = 306/502 (60%), Gaps = 45/502 (8%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESF-------------------ELNLAKNNIGGHLL 48
           L  L+ L+ALDLS N  +G++E Q  F                   EL+L++N + GH  
Sbjct: 205 LSSLRKLKALDLSGNEFSGSMELQGKFSTNLQEWCIHGICELKNTQELDLSQNQLVGHFP 264

Query: 49  DCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKV 108
            CL ++T L+VLD S NQL+G++PS + +L S+EYL L ++ FEG+F   SLAN S L V
Sbjct: 265 SCLTSLTGLRVLDLSSNQLTGTVPSTLGSLPSLEYLSLFDNDFEGSFSFGSLANLSNLMV 324

Query: 109 LRLSSRNNNMLQLKTENFLPTFQL-------------------KHDLKYLDLSHNNLAGD 149
           L+L S+++++  L   ++ P FQL                   + DL+++DLS+N ++G 
Sbjct: 325 LKLCSKSSSLQVLSESSWKPKFQLSVIALRSCNMEKVPHFLIHQKDLRHVDLSNNKISGK 384

Query: 150 FPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQK 209
            P+W+L NNTKL+VL L NN FT + Q+P S HD L  LD S+N F    P++ G I   
Sbjct: 385 LPSWLLANNTKLKVLLLQNNFFT-SFQIPKSAHDLL-FLDASANEFNHLFPENIGWIFPH 442

Query: 210 LLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFT-GCVSLWFLDRSHNNF 268
           L Y+++  N F+GNLPSS+G+MK L +L LS N+F G+L   F  GC S+  L  SHN  
Sbjct: 443 LRYMNIYKNDFQGNLPSSLGNMKGLQYLDLSHNSFHGKLPRSFVNGCYSMAILKLSHNKL 502

Query: 269 HDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFS 328
             +IFP+  NLT L  L++DNN F+GKI  GL     L+ LDMSNN L+G IP WI    
Sbjct: 503 SGEIFPESTNLTSLLGLFMDNNLFTGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGELP 562

Query: 329 SYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDL 388
           S L  LL+S NFLKG IP  L N  SLQLL +S N LSG +         V L +Q N+L
Sbjct: 563 S-LTALLISDNFLKGEIPTSLFNKSSLQLLDLSTNSLSGGIPPHHDSRDGVVLLLQDNNL 621

Query: 389 SGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLR 448
           SGTI + L  + ++  LDLR+N FSG I + IN + N+ +LLLRGN L G I +Q C L 
Sbjct: 622 SGTIADTLLVNVEI--LDLRNNRFSGNIPEFIN-TQNISILLLRGNKLTGRIPHQLCGLS 678

Query: 449 RLGVMDLSHNRINGSIPSCFTN 470
            + ++DLS+NR+NGSIPSC +N
Sbjct: 679 NIQLLDLSNNRLNGSIPSCLSN 700

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221162|ref|NP_177559.1| receptor like protein 15 [Arabidopsis thaliana] gi|12323812|gb|AAG51871.1|AC079678_1 disease resistance protein, putative; 1096-4664 [Arabidopsis thaliana] gi|332197443|gb|AEE35564.1| receptor like protein 15 [Arabidopsis thaliana]

 Score =  351 bits (901), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 219/502 (43%), Positives = 307/502 (61%), Gaps = 45/502 (8%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESF-------------------ELNLAKNNIGGHLL 48
           L  L+ L+ALDLS N  +G++E Q  F                   EL+L++N + GHL 
Sbjct: 202 LSSLRKLKALDLSGNEFSGSMELQGKFCTDLLFSIQSGICELNNMQELDLSQNKLVGHLP 261

Query: 49  DCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKV 108
            CL ++T L+VLD S N+L+G++PS + +L S+EYL L ++ FEG+F   SLAN S L V
Sbjct: 262 SCLTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLEYLSLFDNDFEGSFSFGSLANLSNLMV 321

Query: 109 LRLSSRNNNMLQLKTENFLPTFQL-------------------KHDLKYLDLSHNNLAGD 149
           L+L S+++++  L   ++ P FQL                   + DL+++DLS NN++G 
Sbjct: 322 LKLCSKSSSLQVLSESSWKPKFQLSVIALRSCNMEKVPHFLLHQKDLRHVDLSDNNISGK 381

Query: 150 FPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQK 209
            P+W+L NNTKL+VL L NN FT + Q+P S H+ L  LDVS+N+F    P++ G I   
Sbjct: 382 LPSWLLANNTKLKVLLLQNNLFT-SFQIPKSAHNLL-FLDVSANDFNHLFPENIGWIFPH 439

Query: 210 LLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFT-GCVSLWFLDRSHNNF 268
           L Y++ + N F+ NLPSS+G+M  + ++ LS+N+F G L   F  GC S+  L  SHN  
Sbjct: 440 LRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKL 499

Query: 269 HDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFS 328
             +IFP+  N T +  L++DNN F+GKI  GL     L+ LDMSNN L+G IP WI    
Sbjct: 500 SGEIFPESTNFTNILGLFMDNNLFTGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGELP 559

Query: 329 SYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDL 388
           S L  LL+S NFLKG+IPM L N  SLQLL +S N LSG +       + V L +Q N L
Sbjct: 560 S-LTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVIPPQHDSRNGVVLLLQDNKL 618

Query: 389 SGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLR 448
           SGTIP+ L  + ++  LDLR+N FSG I + IN   N+ +LLLRGN   G I +Q C L 
Sbjct: 619 SGTIPDTLLANVEI--LDLRNNRFSGKIPEFIN-IQNISILLLRGNNFTGQIPHQLCGLS 675

Query: 449 RLGVMDLSHNRINGSIPSCFTN 470
            + ++DLS+NR+NG+IPSC +N
Sbjct: 676 NIQLLDLSNNRLNGTIPSCLSN 697

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553269|ref|XP_002517677.1| receptor-kinase, putative [Ricinus communis] gi|223543309|gb|EEF44841.1| receptor-kinase, putative [Ricinus communis]

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 217/478 (45%), Positives = 292/478 (61%), Gaps = 53/478 (11%)

Query: 19   LSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNL 78
             SF +  G    +   EL L+ N   G L  CL+N+T L+VLD + N+ SG++ SV+  L
Sbjct: 1199 FSFFSFVGLCGLKSLLELGLSVNQFSGPLPQCLSNLTNLQVLDLTSNEFSGNIQSVVSKL 1258

Query: 79   ASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTE--NFLPTFQLK--- 133
             S++YL LS + FEG F  SSLANH KL++  LSS  + ML+L+TE   + PTFQLK   
Sbjct: 1259 TSLKYLFLSGNKFEGLFSFSSLANHKKLEIFELSS-GSTMLELETEIPVWFPTFQLKVID 1317

Query: 134  --------------------HDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTG 173
                                HDL+++DLSHNNL G FP+WILQNN++LEV+ + NNSFTG
Sbjct: 1318 LPNCNLNLRTRRIPSFLLYQHDLQFIDLSHNNLIGAFPSWILQNNSRLEVMNMMNNSFTG 1377

Query: 174  NLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKT 233
              QLP  +H+ ++ L +SSN+  G++P+D G++L  L Y++M+ N FEGN+PSSI  M+ 
Sbjct: 1378 TFQLPSYRHELIN-LKISSNSIAGQIPKDIGLLLSNLRYLNMSWNCFEGNIPSSISQMEG 1436

Query: 234  LTFLHLSKNNFSGELS-TLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKF 292
            L+ L LS N FSGEL  +L +    L  L  S+NNF  +IFP+ MNL  L  L ++NN F
Sbjct: 1437 LSILDLSNNYFSGELPRSLLSNSTYLVALVLSNNNFQGRIFPETMNLEELTVLDMNNNNF 1496

Query: 293  SGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNH 352
            SGKI+       +L  LD+S                         KN + G IP+QL N 
Sbjct: 1497 SGKIDVDFFYCPRLSVLDIS-------------------------KNKVAGVIPIQLCNL 1531

Query: 353  GSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGF 412
             S+++L +SEN   G M S F+ SSL +L++Q+N L+G IP+ L RSS L+ +DLR+N F
Sbjct: 1532 SSVEILDLSENRFFGAMPSCFNASSLRYLFLQKNGLNGLIPHVLSRSSNLVVVDLRNNKF 1591

Query: 413  SGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
            SG I   I++ S L VLLL GN L G I NQ CQLR L +MDLSHN + GSIPSCF N
Sbjct: 1592 SGNIPSWISQLSELHVLLLGGNALGGHIPNQLCQLRNLKIMDLSHNLLCGSIPSCFHN 1649

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491173|ref|XP_004158820.1| PREDICTED: uncharacterized protein LOC101224990 [Cucumis sativus]

 Score =  335 bits (858), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 204/475 (42%), Positives = 275/475 (57%), Gaps = 56/475 (11%)

Query: 26  GTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLD 85
           G  E+    EL L  N I G L +C+ N T+LKV+D S+N+ SG +P+ I  L S+EYL 
Sbjct: 216 GFCEANNLIELKLRNNQIKGELSECVGNFTKLKVVDISYNEFSGKIPTTISKLTSMEYLS 275

Query: 86  LSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTEN---FLPTFQL---------- 132
           L  + FEGTF  SSLANHS L+   L   NN  ++++TE    + P FQL          
Sbjct: 276 LEENDFEGTFSFSSLANHSNLRHFHLLGGNN--IRVETEELHEWQPKFQLETLSMPSCNL 333

Query: 133 --------------KHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLP 178
                         +H LKYLDLSHN+L G FP W+L NN+ L  L L NNS +G LQL 
Sbjct: 334 NDQTASKFPTFLLSQHKLKYLDLSHNHLVGPFPFWLLHNNSALNSLDLRNNSLSGPLQLS 393

Query: 179 HSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLH 238
              H  L HL +SSNNF+G+LP   G++L ++ + D++ N FEGNLPSS+  MK L +L 
Sbjct: 394 TRNHTSLRHLQISSNNFSGQLPTHLGLLLPQVDHFDISKNSFEGNLPSSVEQMKMLCWLD 453

Query: 239 LSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIED 298
            S N FSG+L                    H  IF    N + L FL L NN FSG IED
Sbjct: 454 ASNNKFSGDL--------------------HISIFD---NTSSLQFLLLANNFFSGNIED 490

Query: 299 GLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLL 358
                  L  LD+SNNM+SG IP WI +    L+ + +S+N   G +P+Q+ +   L LL
Sbjct: 491 AWKNKRNLTALDISNNMISGKIPTWIGSLEG-LQYVQLSRNRFAGELPIQICSLFGLTLL 549

Query: 359 SVSENCLSGFM-TSSFSLSSLVHLYVQRNDLSGTIPNALFRSSK--LMTLDLRDNGFSGI 415
            ++EN L G +  + F+ SSLV+LY+++N+ S  IP  L  S+   L  +DL  N FSG 
Sbjct: 550 DIAENQLVGEIPVTCFNSSSLVYLYMRKNEFSKPIPQGLLSSTASILKVIDLSYNNFSGY 609

Query: 416 ISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
           I    N  ++L+VLLL+GN LEGPI  Q CQ+ ++ +MDLS+N++NG+IPSCF N
Sbjct: 610 IPKWFNMFTSLQVLLLKGNELEGPIPTQLCQITKISIMDLSNNKLNGTIPSCFNN 664

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186495296|ref|NP_177557.2| receptor like protein 13 [Arabidopsis thaliana] gi|332197441|gb|AEE35562.1| receptor like protein 13 [Arabidopsis thaliana]

 Score =  333 bits (855), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 219/503 (43%), Positives = 297/503 (59%), Gaps = 47/503 (9%)

Query: 7   GLHKLKNLEALDLSFNNINGTVESQESF----------------ELNLAKNNIGGHLLDC 50
            L  L+ L+ALDLS N  + +VE Q  F                EL L+ N + G    C
Sbjct: 218 ALFALRKLKALDLSDNEFSSSVELQGKFAKTKPLSGTCPWKNMEELKLSNNKLAGQFPLC 277

Query: 51  LNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLR 110
           L ++T L+VLD S NQL+G++PS + NL S+EYL L  + FEG F +  LAN SKLKVLR
Sbjct: 278 LTSLTGLRVLDLSSNQLTGNVPSALANLESLEYLSLFGNNFEGFFSLGLLANLSKLKVLR 337

Query: 111 LSSRNNNMLQLKTENFLPTFQL-------------------KHDLKYLDLSHNNLAGDFP 151
           L S++N++      ++ P FQL                   + DL ++DLS N + G+FP
Sbjct: 338 LDSQSNSLEVEFETSWKPKFQLVVIALRSCNLEKVPHFLLHQKDLHHVDLSDNQIHGNFP 397

Query: 152 AWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLL 211
           +W+L+NNTKLEVL L NNSFT + QLP S H+ L  L+VS N F     Q+ G IL  L+
Sbjct: 398 SWLLENNTKLEVLLLQNNSFT-SFQLPKSAHNLL-FLNVSVNKFNHLFLQNFGWILPHLV 455

Query: 212 YIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLF-TGCVSLWFLDRSHNNFHD 270
            +++A N F+GNLPSS+ +MK++ FL LS N F G+L   F  GC +L  L  SHN    
Sbjct: 456 CVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSG 515

Query: 271 QIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSY 330
           ++FP+  N TRLW + +DNN F+G I  G      L  LD+SNN L+G IP WI      
Sbjct: 516 EVFPEAANFTRLWVMSMDNNLFTGNIGKGFRSLPSLNVLDISNNKLTGVIPSWIGERQG- 574

Query: 331 LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVH---LYVQRND 387
           L  L +S N L+G IP  L N   LQLL +S N LSG +     +SS+ H   L +Q N+
Sbjct: 575 LFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPP--HVSSIYHGAVLLLQNNN 632

Query: 388 LSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQL 447
           LSG IP+ L  +  ++ LDLR+N  SG + + IN + N+ +LLLRGN   G I +QFC L
Sbjct: 633 LSGVIPDTLLLN--VIVLDLRNNRLSGNLPEFIN-TQNISILLLRGNNFTGQIPHQFCSL 689

Query: 448 RRLGVMDLSHNRINGSIPSCFTN 470
             + ++DLS+N+ NGSIPSC +N
Sbjct: 690 SNIQLLDLSNNKFNGSIPSCLSN 712

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12323814|gb|AAG51873.1|AC079678_3 disease resistance protein, putative; 11609-15699 [Arabidopsis thaliana]

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 219/503 (43%), Positives = 297/503 (59%), Gaps = 47/503 (9%)

Query: 7   GLHKLKNLEALDLSFNNINGTVESQESF----------------ELNLAKNNIGGHLLDC 50
            L  L+ L+ALDLS N  + +VE Q  F                EL L+ N + G    C
Sbjct: 286 ALFALRKLKALDLSDNEFSSSVELQGKFAKTKPLSGTCPWKNMEELKLSNNKLAGQFPLC 345

Query: 51  LNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLR 110
           L ++T L+VLD S NQL+G++PS + NL S+EYL L  + FEG F +  LAN SKLKVLR
Sbjct: 346 LTSLTGLRVLDLSSNQLTGNVPSALANLESLEYLSLFGNNFEGFFSLGLLANLSKLKVLR 405

Query: 111 LSSRNNNMLQLKTENFLPTFQL-------------------KHDLKYLDLSHNNLAGDFP 151
           L S++N++      ++ P FQL                   + DL ++DLS N + G+FP
Sbjct: 406 LDSQSNSLEVEFETSWKPKFQLVVIALRSCNLEKVPHFLLHQKDLHHVDLSDNQIHGNFP 465

Query: 152 AWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLL 211
           +W+L+NNTKLEVL L NNSFT + QLP S H+ L  L+VS N F     Q+ G IL  L+
Sbjct: 466 SWLLENNTKLEVLLLQNNSFT-SFQLPKSAHNLL-FLNVSVNKFNHLFLQNFGWILPHLV 523

Query: 212 YIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLF-TGCVSLWFLDRSHNNFHD 270
            +++A N F+GNLPSS+ +MK++ FL LS N F G+L   F  GC +L  L  SHN    
Sbjct: 524 CVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSG 583

Query: 271 QIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSY 330
           ++FP+  N TRLW + +DNN F+G I  G      L  LD+SNN L+G IP WI      
Sbjct: 584 EVFPEAANFTRLWVMSMDNNLFTGNIGKGFRSLPSLNVLDISNNKLTGVIPSWIGERQG- 642

Query: 331 LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVH---LYVQRND 387
           L  L +S N L+G IP  L N   LQLL +S N LSG +     +SS+ H   L +Q N+
Sbjct: 643 LFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPP--HVSSIYHGAVLLLQNNN 700

Query: 388 LSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQL 447
           LSG IP+ L  +  ++ LDLR+N  SG + + IN + N+ +LLLRGN   G I +QFC L
Sbjct: 701 LSGVIPDTLLLN--VIVLDLRNNRLSGNLPEFIN-TQNISILLLRGNNFTGQIPHQFCSL 757

Query: 448 RRLGVMDLSHNRINGSIPSCFTN 470
             + ++DLS+N+ NGSIPSC +N
Sbjct: 758 SNIQLLDLSNNKFNGSIPSCLSN 780

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084515|emb|CBI25536.3| unnamed protein product [Vitis vinifera]

 Score =  331 bits (848), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 210/471 (44%), Positives = 298/471 (63%), Gaps = 17/471 (3%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESFELNL-----AKNNIGGHLLDCLNNMTRLKVLDT 62
           +  L +L++L L +NN+NG++  +   +LNL     ++N   G L  CLNN+T L++LD 
Sbjct: 82  ISTLSHLKSLTLRYNNLNGSLSMEGLCKLNLEALDLSRNGFEGSLPACLNNLTSLRLLDL 141

Query: 63  SFNQLSGSLPSVIV-NLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQL 121
           S N  SG++PS +  NL S+EY+ LS+++FEG+    SL NHS+L V  L+S NN +L  
Sbjct: 142 SENDFSGTIPSSLFSNLKSLEYISLSDNHFEGSIHFGSLFNHSRLVVFDLASNNNWVLP- 200

Query: 122 KTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLP-HS 180
              +FLP+   ++DL+ +DLSHNN+ GD P W+L NNTKLE L   +NS TG L LP +S
Sbjct: 201 ---SFLPS---QYDLRMVDLSHNNITGDIPTWLLDNNTKLEYLSFGSNSLTGVLDLPSNS 254

Query: 181 KHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLS 240
           KH  +  LD SSN   G+LP   G I   L  ++++ N  +GN+PSS+GDM+ L  L LS
Sbjct: 255 KHSHMLLLDFSSNCIHGELPPFIGSIFPGLEVLNLSRNALQGNIPSSMGDMEQLVSLDLS 314

Query: 241 KNNFSGELST-LFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDG 299
            NN SG+L   +  GC+SL  L  S+N+ H  + P   NLT L+FL LDNN FSG+I  G
Sbjct: 315 NNNLSGQLPEHMMMGCISLLVLKLSNNSLHGTL-PTKSNLTDLFFLSLDNNNFSGEISRG 373

Query: 300 LLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLS 359
            L S+ L+ LD+S+N L G IP+WI +FS  L  L +S+N L G +P  L     L+ L 
Sbjct: 374 FLNSSSLQALDISSNSLWGQIPNWIGDFS-VLSTLSLSRNHLDGVVPTSLCKLNELRFLD 432

Query: 360 VSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQ 419
           +S N +   +    +L  +  L+++ N+LSG IP+ L  ++ L+TL+LRDN  SG I   
Sbjct: 433 LSHNKIGPTLPPCANLKKMKFLHLENNELSGPIPHVLSEATSLVTLNLRDNKLSGPIPHW 492

Query: 420 INESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
           I+  S LRVLLL+GN LE  I  Q CQL+ + ++DLSHN ++G+IPSC  N
Sbjct: 493 ISLLSKLRVLLLKGNELEDSIPLQLCQLKSVSILDLSHNHLSGTIPSCLDN 543

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484714|ref|XP_002264041.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 215/497 (43%), Positives = 303/497 (60%), Gaps = 37/497 (7%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESFELNL-----AKNNIGGHLLDCLNNMTRLKVLDT 62
           +  L +L++L L +NN+NG++  +   +LNL     ++N   G L  CLNN+T L++LD 
Sbjct: 114 ISTLSHLKSLTLRYNNLNGSLSMEGLCKLNLEALDLSRNGFEGSLPACLNNLTSLRLLDL 173

Query: 63  SFNQLSGSLPSVIV-NLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQL 121
           S N  SG++PS +  NL S+EY+ LS+++FEG+    SL NHS+L V  L+S NN  L++
Sbjct: 174 SENDFSGTIPSSLFSNLKSLEYISLSDNHFEGSIHFGSLFNHSRLVVFDLAS-NNKYLKV 232

Query: 122 KTENFL---PTFQLK-----------------------HDLKYLDLSHNNLAGDFPAWIL 155
           +TEN +   P FQLK                       +DL+ +DLSHNN+ GD P W+L
Sbjct: 233 ETENPIWSFPLFQLKILRLSNCTLNWPSWVLPSFLPSQYDLRMVDLSHNNITGDIPTWLL 292

Query: 156 QNNTKLEVLCLTNNSFTGNLQLP-HSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYID 214
            NNTKLE L   +NS TG L LP +SKH  +  LD SSN   G+LP   G I   L  ++
Sbjct: 293 DNNTKLEYLSFGSNSLTGVLDLPSNSKHSHMLLLDFSSNCIHGELPPFIGSIFPGLEVLN 352

Query: 215 MANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELST-LFTGCVSLWFLDRSHNNFHDQIF 273
           ++ N  +GN+PSS+GDM+ L  L LS NN SG+L   +  GC+SL  L  S+N+ H  + 
Sbjct: 353 LSRNALQGNIPSSMGDMEQLVSLDLSNNNLSGQLPEHMMMGCISLLVLKLSNNSLHGTL- 411

Query: 274 PKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEV 333
           P   NLT L+FL LDNN FSG+I  G L S+ L+ LD+S+N L G IP+WI +FS  L  
Sbjct: 412 PTKSNLTDLFFLSLDNNNFSGEISRGFLNSSSLQALDISSNSLWGQIPNWIGDFS-VLST 470

Query: 334 LLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIP 393
           L +S+N L G +P  L     L+ L +S N +   +    +L  +  L+++ N+LSG IP
Sbjct: 471 LSLSRNHLDGVVPTSLCKLNELRFLDLSHNKIGPTLPPCANLKKMKFLHLENNELSGPIP 530

Query: 394 NALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVM 453
           + L  ++ L+TL+LRDN  SG I   I+  S LRVLLL+GN LE  I  Q CQL+ + ++
Sbjct: 531 HVLSEATSLVTLNLRDNKLSGPIPHWISLLSKLRVLLLKGNELEDSIPLQLCQLKSVSIL 590

Query: 454 DLSHNRINGSIPSCFTN 470
           DLSHN ++G+IPSC  N
Sbjct: 591 DLSHNHLSGTIPSCLDN 607

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	470
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.948	0.477	0.421	1.5e-83
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.955	0.503	0.394	8.5e-75
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.965	0.419	0.365	6.6e-72
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.963	0.469	0.331	8.4e-51
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.957	0.45	0.329	3.3e-50
TAIR|locus:2091353	1016	AT3G28040 [Arabidopsis thalian	0.965	0.446	0.320	1.9e-49
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.940	0.486	0.330	9.2e-48
TAIR|locus:2005540	999	HAE "HAESA" [Arabidopsis thali	0.938	0.441	0.322	2e-46
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.957	0.430	0.316	1e-45
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.834	0.462	0.316	2.5e-45

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
 Identities = 200/474 (42%), Positives = 282/474 (59%)

Query:     8 LHKLKNLEALDLSFNNINGTVESQESF-------ELNLAKNNIGGHLLDCLNNMTRLKVL 60
             L  L NLE L L+ N+++G +   E F       +L+L  N+  G +  CL ++ +L+VL
Sbjct:   217 LQNLINLEVLGLAQNHVDGPIPI-EVFCKLKNLRDLDLKGNHFVGQIPLCLGSLKKLRVL 275

Query:    61 DTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLK---VLRLSSRNNN 117
             D S NQLSG LPS   +L S+EYL LS++ F+G+F ++ L N + LK   VLR  S    
Sbjct:   276 DLSSNQLSGDLPSSFSSLESLEYLSLSDNNFDGSFSLNPLTNLTNLKFVVVLRFCS---- 331

Query:   118 MLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQL 177
              L+ K  +FL  +Q K  L+ +DLS NNL+G+ P W+L NN +LEVL L NNSFT    +
Sbjct:   332 -LE-KIPSFL-LYQKK--LRLVDLSSNNLSGNIPTWLLTNNPELEVLQLQNNSFT-IFPI 385

Query:   178 PHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFL 237
             P   H+ L   D S+NN  GK P      L  L+ ++ +NN F+G  P+SIG+MK ++FL
Sbjct:   386 PTMVHN-LQIFDFSANNI-GKFPDKMDHALPNLVRLNGSNNGFQGYFPTSIGEMKNISFL 443

Query:   238 HLSKNNFSGELSTLF-TGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKI 296
              LS NNFSG+L   F TGCVS+ FL  SHN F  +  P+  N   L  L +DNN F+G I
Sbjct:   444 DLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRFLPRETNFPSLDVLRMDNNLFTGNI 503

Query:   297 EDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQ 356
               GL  S  L+ LDMSNN LSG IP W+  F  YL+ +L+S NFL+G IP  LL    L 
Sbjct:   504 GGGLSNSTMLRILDMSNNGLSGAIPRWLFEFP-YLDYVLISNNFLEGTIPPSLLGMPFLS 562

Query:   357 LLSVSENCXXXXXXXXXXXXXXVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGII 416
              L +S N               +++++  N+ +G IP+ L +S ++  LDLR+N  SG I
Sbjct:   563 FLDLSGNQFSGALPSHVDSELGIYMFLHNNNFTGPIPDTLLKSVQI--LDLRNNKLSGSI 620

Query:   417 SDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
               Q +++ ++ +LLL+GN L G I  + C L  + ++DLS N++NG IPSC +N
Sbjct:   621 P-QFDDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSN 673

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 696 (250.1 bits), Expect = 8.5e-75, Sum P(2) = 8.5e-75
 Identities = 187/474 (39%), Positives = 263/474 (55%)

Query:     7 GLHKLKNLEALDLSFNNINGTVESQES-FE----LNLAKNNIGG---HLLDCLNNMTRLK 58
             G+ +L+ L+ L LS N   G +    S F     L+L+ N++ G   + +    +M  L 
Sbjct:   173 GICRLEQLQELRLSRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKIPYFISDFKSMEYLS 232

Query:    59 VLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNM 118
             +LD  F  L  SL  +I  L  ++   LS+    G   I    N S     +LSS   + 
Sbjct:   233 LLDNDFEGLF-SL-GLITELTELKVFKLSSR--SGMLQIVE-TNVSGGLQSQLSSIMLSH 287

Query:   119 LQL-KTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQL 177
               L K   FL  +Q   +L+ +DLS+N L+G FP W+L+NNT+L+ L L NNSF   L L
Sbjct:   288 CNLGKIPGFL-WYQ--QELRVIDLSNNILSGVFPTWLLENNTELQALLLQNNSFK-TLTL 343

Query:   178 PHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFL 237
             P +    L  LD+S NNF  +LP+D G+IL  L +++++NN F GN+PSS+  M+ + F+
Sbjct:   344 PRTMRR-LQILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARMENIEFM 402

Query:   238 HLSKNNFSGELS-TLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKI 296
              LS NNFSG+L   LFTGC SL +L  SHN F   I  K  + T L  L +DNN F+GKI
Sbjct:   403 DLSYNNFSGKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGKI 462

Query:   297 EDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQ 356
                LL    L  +D+SNN+L+G IP W+ NF  +LEVL +S N L+G IP  L N   L 
Sbjct:   463 PRTLLNLRMLSVIDLSNNLLTGTIPRWLGNF--FLEVLRISNNRLQGAIPPSLFNIPYLW 520

Query:   357 LLSVSENCXXXXXXXXXXXXXXVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGII 416
             LL +S N                 L +  N+L+G+IP+ L+   +L  LDLR+N  SG I
Sbjct:   521 LLDLSGNFLSGSLPLRSSSDYGYILDLHNNNLTGSIPDTLWYGLRL--LDLRNNKLSGNI 578

Query:   417 SDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
                   + ++ V+LLR N L G I  + C L  + ++D +HNR+N SIPSC TN
Sbjct:   579 P-LFRSTPSISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLNESIPSCVTN 631

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 711 (255.3 bits), Expect = 6.6e-72, Sum P(2) = 6.6e-72
 Identities = 172/470 (36%), Positives = 259/470 (55%)

Query:     7 GLHKLKNLEALDLSFNNINGTVESQESFE----LNLAKNNIGGHLLDCLNNMTR-LKVLD 61
             G+ +L  L  LDLS N +        +      L+L+ N + G+L   ++ +   L+ L 
Sbjct:   353 GICRLMKLRELDLSSNALTSLPYCLGNLTHLRTLDLSNNQLNGNLSSFVSGLPSVLEYLS 412

Query:    62 TSFNQLSGS-LPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQ 120
                N   GS L + +VN   +    LS+    G   + + ++ + L  L++   +N  L 
Sbjct:   413 LLDNNFDGSFLFNSLVNQTRLTVFKLSSKV--GVIQVQTESSWAPLFQLKMLYLSNCSLG 470

Query:   121 LKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHS 180
                  FL     + DL ++DLSHN L G FP W+++NNT+L+ + L+ NS T  LQLP  
Sbjct:   471 STMLGFLVH---QRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLT-KLQLPIL 526

Query:   181 KHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLS 240
              H  L  LD+SSN     + +D G++   L +++ ++N F+G +PSSIG+MK+L  L +S
Sbjct:   527 VHG-LQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMS 585

Query:   241 KNNFSGELSTLF-TGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDG 299
              N   G+L  +F +GC SL  L  S+N    +IF K+ NLT L  L+LD N F+G +E+G
Sbjct:   586 SNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEG 645

Query:   300 LLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLS 359
             LLKS  L  LD+S+N  SG +P WI   S  L  L MS N LKG  P  L     ++++ 
Sbjct:   646 LLKSKNLTLLDISDNRFSGMLPLWIGRISR-LSYLYMSGNQLKGPFPF-LRQSPWVEVMD 703

Query:   360 VSENCXXXXXXXXXXXXXXVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQ 419
             +S N                 L +Q N+ +G +P  LF+++ L  LDLR+N FSG I + 
Sbjct:   704 ISHNSFSGSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGKILNT 763

Query:   420 INESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFT 469
             I+++S LR+LLLR N  +  I  + CQL  +G++DLSHN+  G IPSCF+
Sbjct:   764 IDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFS 813

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 8.4e-51, P = 8.4e-51
 Identities = 163/491 (33%), Positives = 254/491 (51%)

Query:     6 AGLHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFN 65
             +G  +L+     DL F+  +G  E     EL+L++N + GHL  CL ++T L+VLD S N
Sbjct:   219 SGSMELQGKFCTDLLFSIQSGICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSN 278

Query:    66 QLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTEN 125
             +L+G++PS + +L S+EYL L ++ FEG+F   SLAN S L VL+L S+++++  L   +
Sbjct:   279 KLTGTVPSSLGSLQSLEYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESS 338

Query:   126 FLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNL-QLPHSKHDF 184
             + P FQL      + L   N+    P ++L     L  + L++N+ +G L     + +  
Sbjct:   339 WKPKFQLS----VIALRSCNME-KVPHFLLHQKD-LRHVDLSDNNISGKLPSWLLANNTK 392

Query:   185 LHHLDVSSNNFTG-KLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDM-KTLTFLHLSKN 242
             L  L + +N FT  ++P+        LL++D++ N F    P +IG +   L +L+ SKN
Sbjct:   393 LKVLLLQNNLFTSFQIPKSA----HNLLFLDVSANDFNHLFPENIGWIFPHLRYLNTSKN 448

Query:   243 NFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMN-LTRLWFLYLDNNKFSGKIEDGLL 301
             NF   L +       + ++D S N+FH  +   ++N    +  L L +NK SG+I     
Sbjct:   449 NFQENLPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPEST 508

Query:   302 KSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVS 361
                 +  L M NN+ +G I   + +  + LE+L MS N L G IP  +    SL  L +S
Sbjct:   509 NFTNILGLFMDNNLFTGKIGQGLRSLIN-LELLDMSNNNLTGVIPSWIGELPSLTALLIS 567

Query:   362 ENCXXXXXXXXXXXXXXVHLY-VQRNDLSGTIP------NA---LFRSSKLM-------- 403
             +N               + L  +  N LSG IP      N    L + +KL         
Sbjct:   568 DNFLKGDIPMSLFNKSSLQLLDLSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTLL 627

Query:   404 ----TLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNR 459
                  LDLR+N FSG I + IN   N+ +LLLRGN   G I +Q C L  + ++DLS+NR
Sbjct:   628 ANVEILDLRNNRFSGKIPEFIN-IQNISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNR 686

Query:   460 INGSIPSCFTN 470
             +NG+IPSC +N
Sbjct:   687 LNGTIPSCLSN 697

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 531 (192.0 bits), Expect = 3.3e-50, P = 3.3e-50
 Identities = 167/507 (32%), Positives = 257/507 (50%)

Query:     8 LHKLKNLEALDLSFNNINGTVESQESF----------------ELNLAKNNIGGHLLDCL 51
             L  L+ L+ALDLS N  + +VE Q  F                EL L+ N + G    CL
Sbjct:   219 LFALRKLKALDLSDNEFSSSVELQGKFAKTKPLSGTCPWKNMEELKLSNNKLAGQFPLCL 278

Query:    52 NNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRL 111
              ++T L+VLD S NQL+G++PS + NL S+EYL L  + FEG F +  LAN SKLKVLRL
Sbjct:   279 TSLTGLRVLDLSSNQLTGNVPSALANLESLEYLSLFGNNFEGFFSLGLLANLSKLKVLRL 338

Query:   112 SSRNNNM-LQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNS 170
              S++N++ ++ +T ++ P FQL      + L   NL    P ++L     L  + L++N 
Sbjct:   339 DSQSNSLEVEFET-SWKPKFQLV----VIALRSCNLE-KVPHFLLHQKD-LHHVDLSDNQ 391

Query:   171 FTGNLQLPHSKHDF-LHHLDVSSNNFTG-KLPQDKGIILQKLLYIDMANNRFEGNLPSSI 228
               GN      +++  L  L + +N+FT  +LP+        LL+++++ N+F      + 
Sbjct:   392 IHGNFPSWLLENNTKLEVLLLQNNSFTSFQLPKSA----HNLLFLNVSVNKFNHLFLQNF 447

Query:   229 G-DMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMN-LTRLWFLY 286
             G  +  L  ++L+ N F G L +      S+ FLD SHN FH ++  +++     L  L 
Sbjct:   448 GWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILK 507

Query:   287 LDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIP 346
             L +NK SG++        +L  + M NN+ +G+I     +  S L VL +S N L G IP
Sbjct:   508 LSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFRSLPS-LNVLDISNNKLTGVIP 566

Query:   347 MQLLNHGSLQLLSVSENCXXXXXXXXXXXXXXVHLY-VQRNDLSGTIP---NALFRSSKL 402
               +     L  L +S N               + L  +  N LSG IP   ++++  + L
Sbjct:   567 SWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPPHVSSIYHGAVL 626

Query:   403 M-------------------TLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQ 443
             +                    LDLR+N  SG + + IN + N+ +LLLRGN   G I +Q
Sbjct:   627 LLQNNNLSGVIPDTLLLNVIVLDLRNNRLSGNLPEFIN-TQNISILLLRGNNFTGQIPHQ 685

Query:   444 FCQLRRLGVMDLSHNRINGSIPSCFTN 470
             FC L  + ++DLS+N+ NGSIPSC +N
Sbjct:   686 FCSLSNIQLLDLSNNKFNGSIPSCLSN 712

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2091353 AT3G28040 [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 1.9e-49, Sum P(2) = 1.9e-49
 Identities = 150/468 (32%), Positives = 231/468 (49%)

Query:     4 LGAGLHKLKNLEALDLSFNNINGTVESQESF----ELNLAKNNIGGHLLDCLNNMTRLKV 59
             +  G+ KL+ L+ L LS NN  G + +  +     +L+L+ NN+ G +   L ++T L+ 
Sbjct:    93 INRGIQKLQRLKVLSLSNNNFTGNINALSNNNHLQKLDLSHNNLSGQIPSSLGSITSLQH 152

Query:    60 LDTSFNQLSGSLPSVIVN-LASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNM 118
             LD + N  SG+L   + N  +S+ YL LS+++ EG  P S+L   S L  L LS RN   
Sbjct:   153 LDLTGNSFSGTLSDDLFNNCSSLRYLSLSHNHLEGQIP-STLFRCSVLNSLNLS-RNRFS 210

Query:   119 LQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLP 178
                   +F+        L+ LDLS N+L+G  P  IL  +  L+ L L  N F+G L   
Sbjct:   211 ---GNPSFVSGIWRLERLRALDLSSNSLSGSIPLGILSLHN-LKELQLQRNQFSGALPSD 266

Query:   179 HSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLH 238
                   L+ +D+SSN+F+G+LP+     L+ L + D++NN   G+ P  IGDM  L  L 
Sbjct:   267 IGLCPHLNRVDLSSNHFSGELPRTLQK-LKSLNHFDVSNNLLSGDFPPWIGDMTGLVHLD 325

Query:   239 LSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIED 298
              S N  +G+L +  +   SL  L+ S N    ++     +   L  + L  N FSG I D
Sbjct:   326 FSSNELTGKLPSSISNLRSLKDLNLSENKLSGEVPESLESCKELMIVQLKGNDFSGNIPD 385

Query:   299 GLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLL 358
             G      L+E+D S N L+G IP   +     L  L +S N L G+IP ++     ++ L
Sbjct:   386 GFFDLG-LQEMDFSGNGLTGSIPRGSSRLFESLIRLDLSHNSLTGSIPGEVGLFIHMRYL 444

Query:   359 SVSENCXXXXXXXXXXXXXXVHLYVQRND-LSGTIPNALFRSSKLMTLDLRDNGFSGIIS 417
             ++S N               + +   RN  L G++P  +  S  L  L L  N  +G I 
Sbjct:   445 NLSWNHFNTRVPPEIEFLQNLTVLDLRNSALIGSVPADICESQSLQILQLDGNSLTGSIP 504

Query:   418 DQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIP 465
             + I   S+L++L L  N L GPI      L+ L ++ L  N+++G IP
Sbjct:   505 EGIGNCSSLKLLSLSHNNLTGPIPKSLSNLQELKILKLEANKLSGEIP 552

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 507 (183.5 bits), Expect = 9.2e-48, P = 9.2e-48
 Identities = 156/472 (33%), Positives = 243/472 (51%)

Query:    11 LKNLEALDLSFNNINGTVESQ-----ESF-ELNLAKNNIGGHLLDCLNNMTRLKVLDTSF 64
             LK L+ALDLS N I  ++E Q     ++  EL+L   N  G L  C  N+ +L+ LD S 
Sbjct:   194 LKKLKALDLSSNGIYSSMEWQVFCEMKNLQELDLRGINFVGQLPLCFGNLNKLRFLDLSS 253

Query:    65 NQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTE 124
             NQL+G++P    +L S+EYL LS++ FEG F ++ L N +KLKV   SS+++ M+Q+K E
Sbjct:   254 NQLTGNIPPSFSSLESLEYLSLSDNSFEGFFSLNPLTNLTKLKVFIFSSKDD-MVQVKIE 312

Query:   125 NFLPTFQLKHDLKYLDLSHNNLAGDFPAWIL-QNNTKLEVLCLTNNSFTGNLQ--LPHSK 181
             +   T+Q    L  L L   +L    P +++ Q N  L V+ L+ N  +G +   L  + 
Sbjct:   313 S---TWQPLFQLSVLVLRLCSLE-KIPNFLMYQKN--LHVVDLSGNRISGIIPTWLLENN 366

Query:   182 HDFLHHLDVSSNNFT-GKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGD-MKTLTFLHL 239
              + L  L + +N+FT  ++P      +  L  +D + N   G  P + G  +  L  ++ 
Sbjct:   367 PE-LEVLQLKNNSFTIFQMPTS----VHNLQVLDFSENNIGGLFPDNFGRVLPNLVHMNG 421

Query:   240 SKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLT-RLWFLYLDNNKFSGKIED 298
             S N F G   +      ++ FLD S+NN   ++   +++    L  L L +NKFSG    
Sbjct:   422 SNNGFQGNFPSSMGEMYNISFLDLSYNNLSGELPQSFVSSCFSLSILQLSHNKFSGHFLP 481

Query:   299 GLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLL 358
                    L  L ++NN+ +G I   +      L +L MS NFL+G +P  LL    L  L
Sbjct:   482 RQTNFTSLIVLRINNNLFTGKIGVGLLTLVD-LCILDMSNNFLEGELPPLLLVFEYLNFL 540

Query:   359 SVSENCXXXXXXXXXXXXXXVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISD 418
              +S N                 L++  N+ +G IP+    S ++  LDLR+N  SG I  
Sbjct:   541 DLSGNLLSGALPSHVSLDNV--LFLHNNNFTGPIPDTFLGSIQI--LDLRNNKLSGNIP- 595

Query:   419 QINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
             Q  ++ ++  LLLRGN L G I +  C+  ++ ++DLS N++NG IPSCF N
Sbjct:   596 QFVDTQDISFLLLRGNSLTGYIPSTLCEFSKMRLLDLSDNKLNGFIPSCFNN 647

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2005540 HAE "HAESA" [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.0e-46, P = 2.0e-46
 Identities = 149/462 (32%), Positives = 224/462 (48%)

Query:    13 NLEALDLSFNNINGTVESQESFEL-NL-----AKNNIGGHLLDCLNNMTRLKVLDTSFNQ 66
             NL +LDLS N + G++     F L NL     + NN+   +        +L+ L+ + N 
Sbjct:   115 NLISLDLSENLLVGSIPKSLPFNLPNLKFLEISGNNLSDTIPSSFGEFRKLESLNLAGNF 174

Query:    67 LSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENF 126
             LSG++P+ + N+ +++ L L+ + F  +   S L N ++L+VL L+  N           
Sbjct:   175 LSGTIPASLGNVTTLKELKLAYNLFSPSQIPSQLGNLTELQVLWLAGCN------LVGPI 228

Query:   127 LPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDF-- 184
              P+      L  LDL+ N L G  P+WI Q  T +E + L NNSF+G  +LP S  +   
Sbjct:   229 PPSLSRLTSLVNLDLTFNQLTGSIPSWITQLKT-VEQIELFNNSFSG--ELPESMGNMTT 285

Query:   185 LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNF 244
             L   D S N  TGK+P +  ++   L  +++  N  EG LP SI   KTL+ L L  N  
Sbjct:   286 LKRFDASMNKLTGKIPDNLNLL--NLESLNLFENMLEGPLPESITRSKTLSELKLFNNRL 343

Query:   245 SGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSN 304
             +G L +       L ++D S+N F  +I        +L +L L +N FSG+I + L K  
Sbjct:   344 TGVLPSQLGANSPLQYVDLSYNRFSGEIPANVCGEGKLEYLILIDNSFSGEISNNLGKCK 403

Query:   305 QLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENC 364
              L  + +SNN LSG IPH        L +L +S N   G+IP  ++   +L  L +S+N 
Sbjct:   404 SLTRVRLSNNKLSGQIPHGFWGLPR-LSLLELSDNSFTGSIPKTIIGAKNLSNLRISKNR 462

Query:   365 XXXXX-XXXXXXXXXVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINES 423
                            + +    ND SG IP +L +  +L  LDL  N  SG I  ++   
Sbjct:   463 FSGSIPNEIGSLNGIIEISGAENDFSGEIPESLVKLKQLSRLDLSKNQLSGEIPRELRGW 522

Query:   424 SNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIP 465
              NL  L L  N+L G I  +   L  L  +DLS N+ +G IP
Sbjct:   523 KNLNELNLANNHLSGEIPKEVGILPVLNYLDLSSNQFSGEIP 564

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 148/468 (31%), Positives = 222/468 (47%)

Query:    11 LKNLEALDLSFNNINGTVESQ-----ESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFN 65
             L  L  L L  N+++G++ S+        EL L +NN+ G +     N+  + +L+   N
Sbjct:   213 LTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFEN 272

Query:    66 QLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTEN 125
             QLSG +P  I N+ +++ L L  +   G  P S+L N   L VL L     N       +
Sbjct:   273 QLSGEIPPEIGNMTALDTLSLHTNKLTGPIP-STLGNIKTLAVLHLYLNQLN------GS 325

Query:   126 FLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFL 185
               P       +  L++S N L G  P       T LE L L +N  +G +    +    L
Sbjct:   326 IPPELGEMESMIDLEISENKLTGPVPD-SFGKLTALEWLFLRDNQLSGPIPPGIANSTEL 384

Query:   186 HHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFS 245
               L + +NNFTG LP D      KL  + + +N FEG +P S+ D K+L  +    N+FS
Sbjct:   385 TVLQLDTNNFTGFLP-DTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFS 443

Query:   246 GELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQ 305
             G++S  F    +L F+D S+NNFH Q+   +    +L    L NN  +G I   +    Q
Sbjct:   444 GDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQ 503

Query:   306 LKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCX 365
             L +LD+S+N ++G +P  I+N +  +  L ++ N L G IP  +    +L+ L +S N  
Sbjct:   504 LSQLDLSSNRITGELPESISNINR-ISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRF 562

Query:   366 XXXXXXXXXXXXXVH-LYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESS 424
                          ++ + + RNDL  TIP  L + S+L  LDL  N   G IS Q     
Sbjct:   563 SSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSLQ 622

Query:   425 NLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIP--SCFTN 470
             NL  L L  N L G I   F  +  L  +D+SHN + G IP  + F N
Sbjct:   623 NLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRN 670

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 2.5e-45, Sum P(2) = 2.5e-45
 Identities = 133/420 (31%), Positives = 195/420 (46%)

Query:     6 AGLHKLKNLEALDLSFNNINGTV-----ESQESFELNLAKNNIGGHLLDCLNNMTRLKVL 60
             + L  L  L  L+L  N + G +     + ++   L+LA NN+ G +   L N++ L  L
Sbjct:   176 SSLGNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHL 235

Query:    61 DTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQ 120
               + NQL G +P+ I NL  +  +   N+   G  PIS  AN +KL +  LSS  NN   
Sbjct:   236 VLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPIS-FANLTKLSIFVLSS--NNF-- 290

Query:   121 LKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPH- 179
               T  F     + H+L+Y D+S+N+ +G FP  +L   + LE + L  N FTG ++  + 
Sbjct:   291 --TSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLIPS-LESIYLQENQFTGPIEFANT 347

Query:   180 SKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHL 239
             S    L  L +  N   G +P+    +L  L  +D+++N F G +P +I  +  L  L L
Sbjct:   348 SSSTKLQDLILGRNRLHGPIPESISRLLN-LEELDISHNNFTGAIPPTISKLVNLLHLDL 406

Query:   240 SKNNFSGELSTLFTGCVSLWFLDR---SHNNFHDQIFPKYMNLTRLWF-LYLDNNKFSGK 295
             SKNN  GE+      C  LW L+    SHN+F    F        L   L L++N F G 
Sbjct:   407 SKNNLEGEVPA----C--LWRLNTMVLSHNSFSS--FENTSQEEALIEELDLNSNSFQGP 458

Query:   296 IEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSL 355
             I   + K + L  LD+SNN+ SG IP  I NFS  ++ L +  N   G +P        L
Sbjct:   459 IPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATEL 518

Query:   356 QLLSVSENCXXXXXXXXXXXXXXVHLY-VQRNDLSGTIPNALFRSSKLMTLDLRDNGFSG 414
               L VS N               + L  V+ N +    P+ L     L  L+LR N F G
Sbjct:   519 VSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYG 578

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	470
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-51
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-47
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-46
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-42
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-38
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  186 bits (474), Expect = 3e-51
 Identities = 159/486 (32%), Positives = 231/486 (47%), Gaps = 67/486 (13%)

Query: 36  LNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLA-SVEYLDLSNSYFEGT 94
           ++L+  NI G +   +  +  ++ ++ S NQLSG +P  I   + S+ YL+LSN+ F G+
Sbjct: 74  IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS 133

Query: 95  FPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWI 154
            P  S+ N   L+ L LS   NNML  +  N + +F     LK LDL  N L G  P  +
Sbjct: 134 IPRGSIPN---LETLDLS---NNMLSGEIPNDIGSFS---SLKVLDLGGNVLVGKIPNSL 184

Query: 155 LQNNTKLEVLCLTNNSFTGNLQLPHSKHDF--------------------------LHHL 188
             N T LE L L +N   G  Q+P                                L+HL
Sbjct: 185 -TNLTSLEFLTLASNQLVG--QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241

Query: 189 DVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGEL 248
           D+  NN TG +P   G  L+ L Y+ +  N+  G +P SI  ++ L  L LS N+ SGE+
Sbjct: 242 DLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300

Query: 249 STLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKE 308
             L     +L  L    NNF  +I     +L RL  L L +NKFSG+I   L K N L  
Sbjct: 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV 360

Query: 309 LDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGF 368
           LD+S N L+G IP  + + S  L  L++  N L+G IP  L    SL+ + + +N  SG 
Sbjct: 361 LDLSTNNLTGEIPEGLCS-SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419

Query: 369 MTSSFS-------------------------LSSLVHLYVQRNDLSGTIPNALFRSSKLM 403
           + S F+                         + SL  L + RN   G +P+  F S +L 
Sbjct: 420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD-SFGSKRLE 478

Query: 404 TLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGS 463
            LDL  N FSG +  ++   S L  L L  N L G I ++    ++L  +DLSHN+++G 
Sbjct: 479 NLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ 538

Query: 464 IPSCFT 469
           IP+ F+
Sbjct: 539 IPASFS 544

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  174 bits (443), Expect = 4e-47
 Identities = 155/491 (31%), Positives = 235/491 (47%), Gaps = 52/491 (10%)

Query: 10  KLKNLEALDLSFNNINGTV------ESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTS 63
           +L  ++ ++LS N ++G +       S     LNL+ NN  G +     ++  L+ LD S
Sbjct: 91  RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLS 148

Query: 64  FNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKT 123
            N LSG +P+ I + +S++ LDL  +   G  P S L N + L+ L L+S      QL  
Sbjct: 149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASN-----QLVG 202

Query: 124 ENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHD 183
           +      Q+K  LK++ L +NNL+G+ P  I    T L  L L  N+ TG   +P S  +
Sbjct: 203 QIPRELGQMK-SLKWIYLGYNNLSGEIPYEIGGL-TSLNHLDLVYNNLTG--PIPSSLGN 258

Query: 184 F--LHHLDVSSNNFTGKLPQDKGII-LQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLS 240
              L +L +  N  +G +P    I  LQKL+ +D+++N   G +P  +  ++ L  LHL 
Sbjct: 259 LKNLQYLFLYQNKLSGPIP--PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316

Query: 241 KNNFSGELSTLFTGCVSLWFLDRSHNNFHDQI---FPKYMNLTRLWFLYLDNNKFSGKIE 297
            NNF+G++    T    L  L    N F  +I     K+ NLT    L L  N  +G+I 
Sbjct: 317 SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLT---VLDLSTNNLTGEIP 373

Query: 298 DGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLL---------------------- 335
           +GL  S  L +L + +N L G IP  +    S   V L                      
Sbjct: 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL 433

Query: 336 -MSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPN 394
            +S N L+G I  +  +  SLQ+LS++ N   G +  SF    L +L + RN  SG +P 
Sbjct: 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPR 493

Query: 395 ALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMD 454
            L   S+LM L L +N  SG I D+++    L  L L  N L G I   F ++  L  +D
Sbjct: 494 KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553

Query: 455 LSHNRINGSIP 465
           LS N+++G IP
Sbjct: 554 LSQNQLSGEIP 564

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  171 bits (434), Expect = 6e-46
 Identities = 126/416 (30%), Positives = 192/416 (46%), Gaps = 36/416 (8%)

Query: 52  NNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRL 111
           NN +R+  +D S   +SG + S I  L  ++ ++LSN+   G  P               
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDD------------- 112

Query: 112 SSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSF 171
                             F     L+YL+LS+NN  G  P   + N   LE L L+NN  
Sbjct: 113 -----------------IFTTSSSLRYLNLSNNNFTGSIPRGSIPN---LETLDLSNNML 152

Query: 172 TGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDM 231
           +G +         L  LD+  N   GK+P      L  L ++ +A+N+  G +P  +G M
Sbjct: 153 SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQLVGQIPRELGQM 211

Query: 232 KTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNK 291
           K+L +++L  NN SGE+     G  SL  LD  +NN    I     NL  L +L+L  NK
Sbjct: 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271

Query: 292 FSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLN 351
            SG I   +    +L  LD+S+N LSG IP  +    + LE+L +  N   G IP+ L +
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN-LEILHLFSNNFTGKIPVALTS 330

Query: 352 HGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDN 410
              LQ+L +  N  SG +  +    ++L  L +  N+L+G IP  L  S  L  L L  N
Sbjct: 331 LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390

Query: 411 GFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPS 466
              G I   +    +LR + L+ N   G + ++F +L  +  +D+S+N + G I S
Sbjct: 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS 446

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  160 bits (405), Expect = 3e-42
 Identities = 151/486 (31%), Positives = 219/486 (45%), Gaps = 93/486 (19%)

Query: 13  NLEALDLSFN----NINGTVESQESFE-LNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQL 67
           +L+ LDL  N     I  ++ +  S E L LA N + G +   L  M  LK +   +N L
Sbjct: 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224

Query: 68  SGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFL 127
           SG +P  I  L S+ +LDL  +   G  P SSL N   L+ L L     N L       +
Sbjct: 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIP-SSLGNLKNLQYLFLY---QNKLSGPIPPSI 280

Query: 128 PTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNL-----QLPH--- 179
             F L+  L  LDLS N+L+G+ P  ++Q    LE+L L +N+FTG +      LP    
Sbjct: 281 --FSLQ-KLISLDLSDNSLSGEIPELVIQLQN-LEILHLFSNNFTGKIPVALTSLPRLQV 336

Query: 180 ----------------SKHDFLHHLDVSSNNFTGKLPQ---DKGIILQKLLYIDMANNRF 220
                            KH+ L  LD+S+NN TG++P+     G + + +L+    +N  
Sbjct: 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF----SNSL 392

Query: 221 EGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLT 280
           EG +P S+G  ++L  + L  N+FSGEL + FT    ++FLD S+NN   +I  +  ++ 
Sbjct: 393 EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP 452

Query: 281 RLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNF 340
            L  L L  NKF G + D    S +L+ LD+S N  SG +P                   
Sbjct: 453 SLQMLSLARNKFFGGLPD-SFGSKRLENLDLSRNQFSGAVP------------------- 492

Query: 341 LKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSS 400
                                            SLS L+ L +  N LSG IP+ L    
Sbjct: 493 -------------------------RKLG----SLSELMQLKLSENKLSGEIPDELSSCK 523

Query: 401 KLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRI 460
           KL++LDL  N  SG I    +E   L  L L  N L G I      +  L  +++SHN +
Sbjct: 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

Query: 461 NGSIPS 466
           +GS+PS
Sbjct: 584 HGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  147 bits (372), Expect = 7e-38
 Identities = 127/371 (34%), Positives = 191/371 (51%), Gaps = 22/371 (5%)

Query: 10  KLKNLEALDLSFNNINGTVES-----QESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSF 64
            L +L  LDL +NN+ G + S     +    L L +N + G +   + ++ +L  LD S 
Sbjct: 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293

Query: 65  NQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTE 124
           N LSG +P +++ L ++E L L ++ F G  P++ L +  +L+VL+L S        K  
Sbjct: 294 NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA-LTSLPRLQVLQLWSN-------KFS 345

Query: 125 NFLPTFQLKHD-LKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHD 183
             +P    KH+ L  LDLS NNL G+ P   L ++  L  L L +NS  G +        
Sbjct: 346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPE-GLCSSGNLFKLILFSNSLEGEIPKSLGACR 404

Query: 184 FLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNN 243
            L  + +  N+F+G+LP +    L  + ++D++NN  +G + S   DM +L  L L++N 
Sbjct: 405 SLRRVRLQDNSFSGELPSEF-TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463

Query: 244 FSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKS 303
           F G L   F G   L  LD S N F   +  K  +L+ L  L L  NK SG+I D L   
Sbjct: 464 FFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522

Query: 304 NQLKELDMSNNMLSGHIPHWIANFSSY--LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVS 361
            +L  LD+S+N LSG IP   A+FS    L  L +S+N L G IP  L N  SL  +++S
Sbjct: 523 KKLVSLDLSHNQLSGQIP---ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579

Query: 362 ENCLSGFMTSS 372
            N L G + S+
Sbjct: 580 HNHLHGSLPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 90.7 bits (225), Expect = 3e-19
 Identities = 78/269 (28%), Positives = 121/269 (44%), Gaps = 39/269 (14%)

Query: 6   AGLHKLKNLEALDLSFNNINGTV-----ESQESFELNLAKNNIGGHLLDCLNNMTRLKVL 60
             L K  NL  LDLS NN+ G +      S   F+L L  N++ G +   L     L+ +
Sbjct: 350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV 409

Query: 61  DTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQ 120
               N  SG LPS    L  V +LD+SN+  +G                R++SR  +M  
Sbjct: 410 RLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG----------------RINSRKWDMPS 453

Query: 121 LKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHS 180
           L+                L L+ N   G  P      + +LE L L+ N F+G +     
Sbjct: 454 LQM---------------LSLARNKFFGGLPD--SFGSKRLENLDLSRNQFSGAVPRKLG 496

Query: 181 KHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLS 240
               L  L +S N  +G++P D+    +KL+ +D+++N+  G +P+S  +M  L+ L LS
Sbjct: 497 SLSELMQLKLSENKLSGEIP-DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555

Query: 241 KNNFSGELSTLFTGCVSLWFLDRSHNNFH 269
           +N  SGE+        SL  ++ SHN+ H
Sbjct: 556 QNQLSGEIPKNLGNVESLVQVNISHNHLH 584

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 83.7 bits (207), Expect = 4e-17
 Identities = 66/194 (34%), Positives = 97/194 (50%), Gaps = 3/194 (1%)

Query: 278 NLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMS 337
           N +R+  + L     SGKI   + +   ++ +++SNN LSG IP  I   SS L  L +S
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 338 KNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNAL 396
            N   G+IP   +   +L+ L +S N LSG + +   S SSL  L +  N L G IPN+L
Sbjct: 127 NNNFTGSIPRGSIP--NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184

Query: 397 FRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLS 456
              + L  L L  N   G I  ++ +  +L+ + L  N L G I  +   L  L  +DL 
Sbjct: 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244

Query: 457 HNRINGSIPSCFTN 470
           +N + G IPS   N
Sbjct: 245 YNNLTGPIPSSLGN 258

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 65.3 bits (159), Expect = 4e-11
 Identities = 65/229 (28%), Positives = 102/229 (44%), Gaps = 63/229 (27%)

Query: 4   LGAGLHKLKNLEALDLSFNNINGTVESQE----SFE-LNLAKNNIGGHLLDCLNNMTRLK 58
           L +   KL  +  LD+S NN+ G + S++    S + L+LA+N   G L D   +  RL+
Sbjct: 420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLE 478

Query: 59  VLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNM 118
            LD S NQ SG++P  + +L+ +  L LS +   G  P              LSS     
Sbjct: 479 NLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP------------DELSSCKK-- 524

Query: 119 LQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLP 178
                            L  LDLSHN L+G  PA                 SF       
Sbjct: 525 -----------------LVSLDLSHNQLSGQIPA-----------------SF------- 543

Query: 179 HSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSS 227
            S+   L  LD+S N  +G++P++ G + + L+ +++++N   G+LPS+
Sbjct: 544 -SEMPVLSQLDLSQNQLSGEIPKNLGNV-ESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 278 NLTRLWF---LYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVL 334
           +    WF   L LDN    G I + + K   L+ +++S N + G+IP  + + +S LEVL
Sbjct: 413 STKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS-LEVL 471

Query: 335 LMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSG 367
            +S N   G+IP  L    SL++L+++ N LSG
Sbjct: 472 DLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 2/89 (2%)

Query: 309 LDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGF 368
           L + N  L G IP+ I+    +L+ + +S N ++GNIP  L +  SL++L +S N  +G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 369 MTSSFS-LSSLVHLYVQRNDLSGTIPNAL 396
           +  S   L+SL  L +  N LSG +P AL
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 19/94 (20%)

Query: 3   FLGAGLHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDT 62
           F+   + KL++L++++LS N+I G +                      L ++T L+VLD 
Sbjct: 433 FIPNDISKLRHLQSINLSGNSIRGNIPPS-------------------LGSITSLEVLDL 473

Query: 63  SFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFP 96
           S+N  +GS+P  +  L S+  L+L+ +   G  P
Sbjct: 474 SYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 405 LDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSI 464
           L L + G  G I + I++  +L+ + L GN + G I      +  L V+DLS+N  NGSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 465 P 465
           P
Sbjct: 483 P 483

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 5e-06
 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 365 LSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINES 423
           L GF+ +  S L  L  + +  N + G IP +L   + L  LDL  N F+G I + + + 
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 424 SNLRVLLLRGNYLEG 438
           ++LR+L L GN L G
Sbjct: 490 TSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 25/84 (29%), Positives = 41/84 (48%)

Query: 213 IDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQI 272
           + + N    G +P+ I  ++ L  ++LS N+  G +        SL  LD S+N+F+  I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 273 FPKYMNLTRLWFLYLDNNKFSGKI 296
                 LT L  L L+ N  SG++
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 7e-05
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 184 FLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNN 243
           F+  L + +    G +P D    L+ L  I+++ N   GN+P S+G + +L  L LS N+
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477

Query: 244 FSG 246
           F+G
Sbjct: 478 FNG 480

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 164 LCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGN 223
           L L N    G +    SK   L  +++S N+  G +P   G I   L  +D++ N F G+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGS 481

Query: 224 LPSSIGDMKTLTFLHLSKNNFSGEL 248
           +P S+G + +L  L+L+ N+ SG +
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 24/79 (30%), Positives = 40/79 (50%)

Query: 388 LSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQL 447
           L G IPN + +   L +++L  N   G I   +   ++L VL L  N   G I     QL
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 448 RRLGVMDLSHNRINGSIPS 466
             L +++L+ N ++G +P+
Sbjct: 490 TSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 72/286 (25%), Positives = 105/286 (36%), Gaps = 49/286 (17%)

Query: 8   LHKLKNLEALDLSFNNINGT--------VESQESF-ELNLAKNNIGGH------LLDCLN 52
           L KL  L+ L L  N +           +  Q S  EL L+ N  G        LL  L 
Sbjct: 19  LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT 78

Query: 53  NMTRLKVLDTSFNQLSGSLPSVIVNL---ASVEYLDLSNSYFEGT---FPISSLANHS-K 105
               L+ LD S N L      V+ +L   +S++ L L+N+             L +    
Sbjct: 79  KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPA 138

Query: 106 LKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGD-FP--AWILQNNTKLE 162
           L+ L L    N +     E      +   DLK L+L++N +        A  L+ N  LE
Sbjct: 139 LEKLVLG--RNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLE 196

Query: 163 VLCLTNNSFT--GNLQLPH--SKHDFLHHLDVSSNNFTGKLPQDKGI---------ILQK 209
           VL L NN  T  G   L    +    L  L++  NN T     D G              
Sbjct: 197 VLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT-----DAGAAALASALLSPNIS 251

Query: 210 LLYIDMANNRFE----GNLPSSIGDMKTLTFLHLSKNNFSGELSTL 251
           LL + ++ N        +L   + + ++L  L L  N F  E + L
Sbjct: 252 LLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL 297

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 21/60 (35%), Positives = 27/60 (45%)

Query: 401 KLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRI 460
            L +LDL +N  + I         NL+VL L GN L       F  L  L  +DLS N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 36  LNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTF 95
           L L    + G + + ++ +  L+ ++ S N + G++P  + ++ S+E LDLS + F G+ 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 96  PISSLANHSKLKVLRLSSRNNNML 119
           P  SL   + L++L L   N N L
Sbjct: 483 P-ESLGQLTSLRILNL---NGNSL 502

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	470
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.95
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.83
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.83
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.82
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.5
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.36
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.35
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.32
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.28
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.26
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.24
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.23
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.23
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.13
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.12
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.11
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.05
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.04
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.03
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.0
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.98
PLN03150	623	hypothetical protein; Provisional	98.98
PLN03150	623	hypothetical protein; Provisional	98.94
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.76
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.74
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.73
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.69
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.68
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.68
KOG4341	483	consensus F-box protein containing LRR [General fu	98.66
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.66
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.58
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.55
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.55
KOG4341	483	consensus F-box protein containing LRR [General fu	98.51
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.46
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.43
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.37
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.28
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.17
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.09
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.08
PRK15386	426	type III secretion protein GogB; Provisional	97.95
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.91
PRK15386	426	type III secretion protein GogB; Provisional	97.82
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.73
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.73
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.64
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.56
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.5
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.4
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.39
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.25
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.43
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.4
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.67
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.67
KOG4308	478	consensus LRR-containing protein [Function unknown	94.94
KOG4308	478	consensus LRR-containing protein [Function unknown	94.54
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.99
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.34
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.16
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.8
smart00370	26	LRR Leucine-rich repeats, outliers.	92.41
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.41
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.44
smart00370	26	LRR Leucine-rich repeats, outliers.	90.44
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.67
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	87.24
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	85.6
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	83.62

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.2e-50  Score=424.62  Aligned_cols=454  Identities=31%  Similarity=0.448  Sum_probs=210.6

Q ss_pred             ccccccCCCcCceeeccCCCCCCccc------cccccccccccccC----------------------CCCchHhhhcCC
Q 046000            4 LGAGLHKLKNLEALDLSFNNINGTVE------SQESFELNLAKNNI----------------------GGHLLDCLNNMT   55 (470)
Q Consensus         4 l~~~l~~~~~L~~L~ls~~~~~~~~~------~~~L~~L~l~~~~~----------------------~~~~~~~~~~~~   55 (470)
                      ++.++..+++|++|+|++|++.+..+      +.+|++|++++|++                      .+..|..+++++
T Consensus        85 ~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~  164 (968)
T PLN00113         85 ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFS  164 (968)
T ss_pred             CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCC
Confidence            34455556666666666665543221      34455555555444                      444455555555


Q ss_pred             CCcEEEccCCccccccchhhhcCcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCc
Q 046000           56 RLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHD  135 (470)
Q Consensus        56 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  135 (470)
                      +|++|++++|.+.+..|..+.++++|++|++++|.+.+..| ..+.++++|+.|+++.|.+..      ..+..+..+++
T Consensus       165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~------~~p~~l~~l~~  237 (968)
T PLN00113        165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP-RELGQMKSLKWIYLGYNNLSG------EIPYEIGGLTS  237 (968)
T ss_pred             CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCC-hHHcCcCCccEEECcCCccCC------cCChhHhcCCC
Confidence            55555555555544455555555555555555555443333 344455555555555443321      11223344444


Q ss_pred             ccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeec
Q 046000          136 LKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDM  215 (470)
Q Consensus       136 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  215 (470)
                      |++|++++|.+.+.+|.. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.+|..+. .+++|++|++
T Consensus       238 L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~l  315 (968)
T PLN00113        238 LNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI-QLQNLEILHL  315 (968)
T ss_pred             CCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc-CCCCCcEEEC
Confidence            555555555444333332 22444455555554444433344444444444455444444433333222 2444444444


Q ss_pred             cCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccc
Q 046000          216 ANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGK  295 (470)
Q Consensus       216 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~  295 (470)
                      ++|.+.+..|..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++++.+++++|.+.+.
T Consensus       316 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~  395 (968)
T PLN00113        316 FSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE  395 (968)
T ss_pred             CCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEeccc
Confidence            44444444444444444444444444444444444444444444444444444333333333334444444444444333


Q ss_pred             cchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccccc
Q 046000          296 IEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSL  375 (470)
Q Consensus       296 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~  375 (470)
                      .+..+..+++|+.|++++|.+.+..|..+..++. ++.+++++|.+.+.++..+..+++|+.|++++|.+....+..+..
T Consensus       396 ~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~  474 (968)
T PLN00113        396 IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPL-VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS  474 (968)
T ss_pred             CCHHHhCCCCCCEEECcCCEeeeECChhHhcCCC-CCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc
Confidence            3444444445555555555544444444444333 445555555444444444444444444444444443332222233


Q ss_pred             CcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEc
Q 046000          376 SSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDL  455 (470)
Q Consensus       376 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l  455 (470)
                      ++|+.|++++|++.+..|..+..+++|+.|++++|++.+.+|+.+..+++|++|++++|.+++.+|..+..+++|+.|++
T Consensus       475 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  554 (968)
T PLN00113        475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL  554 (968)
T ss_pred             ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEEC
Confidence            44444444444444444444444444555555555444444444444444444444444444444444444444444444


Q ss_pred             cCcccccccCCC
Q 046000          456 SHNRINGSIPSC  467 (470)
Q Consensus       456 ~~n~~~~~~p~~  467 (470)
                      ++|++++.+|..
T Consensus       555 s~N~l~~~~p~~  566 (968)
T PLN00113        555 SQNQLSGEIPKN  566 (968)
T ss_pred             CCCcccccCChh
Confidence            444444444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.3e-49  Score=414.87  Aligned_cols=452  Identities=30%  Similarity=0.449  Sum_probs=304.5

Q ss_pred             CCcCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhh-cCCCCcEEEccCCccccccchhhhcCcCCcEE
Q 046000           11 LKNLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLN-NMTRLKVLDTSFNQLSGSLPSVIVNLASVEYL   84 (470)
Q Consensus        11 ~~~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L   84 (470)
                      ..+++.||++++.+.+..+     +++|+.|++++|.+.+.+|..+. .+++|++|++++|.+.+..|.  +.+++|++|
T Consensus        68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L  145 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL  145 (968)
T ss_pred             CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence            4589999999998876654     88999999999999877777654 788888888888877654443  345556666


Q ss_pred             eccCccCcCccChhhhccccccceecccCCCCcccccc------------------ccCCCCcccccCcccEEEccCccc
Q 046000           85 DLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLK------------------TENFLPTFQLKHDLKYLDLSHNNL  146 (470)
Q Consensus        85 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~------------------~~~~~~~~~~~~~L~~L~l~~~~i  146 (470)
                      ++++|.+.+..| ..+..+++|++|++++|.+......                  ....+..+..+++|++|++++|.+
T Consensus       146 ~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  224 (968)
T PLN00113        146 DLSNNMLSGEIP-NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL  224 (968)
T ss_pred             ECcCCcccccCC-hHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence            666665554444 3455555555555555543210000                  001122344445555555555555


Q ss_pred             cCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCch
Q 046000          147 AGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPS  226 (470)
Q Consensus       147 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  226 (470)
                      .+.+|..+ ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|..+.. +++|++|++++|.+.+..|.
T Consensus       225 ~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~  302 (968)
T PLN00113        225 SGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDLSDNSLSGEIPE  302 (968)
T ss_pred             CCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh-ccCcCEEECcCCeeccCCCh
Confidence            54444432 34555555555555555444555555555666666555555444444332 55666666666665555555


Q ss_pred             hhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCc
Q 046000          227 SIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQL  306 (470)
Q Consensus       227 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L  306 (470)
                      .+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..++.+++|+.+++++|++.+..+..+...+++
T Consensus       303 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L  382 (968)
T PLN00113        303 LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL  382 (968)
T ss_pred             hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCC
Confidence            55666666666666666555555555666666666666666655555556666666666666666665555666666666


Q ss_pred             cEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccC
Q 046000          307 KELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQR  385 (470)
Q Consensus       307 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~  385 (470)
                      +.+++++|.+.+..|..+..+.. ++.+++++|.+++..|..+..++.|+.|++++|.+....+..+ .+++|++|++++
T Consensus       383 ~~L~l~~n~l~~~~p~~~~~~~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  461 (968)
T PLN00113        383 FKLILFSNSLEGEIPKSLGACRS-LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR  461 (968)
T ss_pred             CEEECcCCEecccCCHHHhCCCC-CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence            66666666666666666666555 7777777777777777777777788888888887766554433 678888888888


Q ss_pred             CcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccC
Q 046000          386 NDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIP  465 (470)
Q Consensus       386 ~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p  465 (470)
                      |++.+..|..+ ..++|+.|++++|++.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++++.+|
T Consensus       462 n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  540 (968)
T PLN00113        462 NKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP  540 (968)
T ss_pred             ceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC
Confidence            88876666654 45889999999999988888889999999999999999999999999999999999999999999999


Q ss_pred             CCcc
Q 046000          466 SCFT  469 (470)
Q Consensus       466 ~~~~  469 (470)
                      ..|.
T Consensus       541 ~~~~  544 (968)
T PLN00113        541 ASFS  544 (968)
T ss_pred             hhHh
Confidence            8764

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-39  Score=290.42  Aligned_cols=365  Identities=25%  Similarity=0.252  Sum_probs=258.7

Q ss_pred             ccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccCccCcCccChhhhccccccceecccCC
Q 046000           35 ELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSR  114 (470)
Q Consensus        35 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  114 (470)
                      .|++++|.+....+..|.++++|+.+++.+|.++ .+|...+...+|+.|+|.+|.|. ......+..++.         
T Consensus        82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~a---------  150 (873)
T KOG4194|consen   82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPA---------  150 (873)
T ss_pred             eeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhh---------
Confidence            4555555555555555555555555555555554 44444444444555555555544 222234444444         


Q ss_pred             CCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCc
Q 046000          115 NNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNN  194 (470)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~  194 (470)
                                           ||.||++.|.|+ +++..-+..-.++++|++++|.|+......+..+.+|..|.++.|.
T Consensus       151 ---------------------lrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr  208 (873)
T KOG4194|consen  151 ---------------------LRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR  208 (873)
T ss_pred             ---------------------hhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc
Confidence                                 555555555555 5554444445566677777776666666666677777777777777


Q ss_pred             ccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchh
Q 046000          195 FTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFP  274 (470)
Q Consensus       195 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  274 (470)
                      ++ .+|...|..+++|+.|++..|++....-..|.++++|+.|.+..|.+......+|.++.++++|+++.|++......
T Consensus       209 it-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g  287 (873)
T KOG4194|consen  209 IT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG  287 (873)
T ss_pred             cc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc
Confidence            77 77888888788888888888887644455688888888888888888877778888888888888888888776666


Q ss_pred             hhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCC
Q 046000          275 KYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGS  354 (470)
Q Consensus       275 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~  354 (470)
                      .+.++.+|+.|+++.|.|.....+.+..+++|++|++++|+++.--+.++..+.. +++|.+++|.++......|..+.+
T Consensus       288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~-Le~LnLs~Nsi~~l~e~af~~lss  366 (873)
T KOG4194|consen  288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQ-LEELNLSHNSIDHLAEGAFVGLSS  366 (873)
T ss_pred             cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHH-hhhhcccccchHHHHhhHHHHhhh
Confidence            7778888888888888888777888888888888888888888444445554444 888888888887555556778888


Q ss_pred             CeEEEccCccccC---cccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEE
Q 046000          355 LQLLSVSENCLSG---FMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLL  430 (470)
Q Consensus       355 L~~L~l~~~~l~~---~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  430 (470)
                      |++|||+.|++.-   .....| .++.|++|.+.||++..+...+|.++++|+.|||.+|.|.++-+..|+.+ +|++|.
T Consensus       367 L~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv  445 (873)
T KOG4194|consen  367 LHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELV  445 (873)
T ss_pred             hhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhh
Confidence            8999998887542   233333 68889999999999887777888899999999999999988888888888 888887


Q ss_pred             ccCcc
Q 046000          431 LRGNY  435 (470)
Q Consensus       431 l~~n~  435 (470)
                      +..-.
T Consensus       446 ~nSss  450 (873)
T KOG4194|consen  446 MNSSS  450 (873)
T ss_pred             hcccc
Confidence            75543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4.2e-41  Score=289.19  Aligned_cols=436  Identities=23%  Similarity=0.339  Sum_probs=323.1

Q ss_pred             ccccccCCCcCceeeccCCCCCCccc----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCc
Q 046000            4 LGAGLHKLKNLEALDLSFNNINGTVE----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLA   79 (470)
Q Consensus         4 l~~~l~~~~~L~~L~ls~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~   79 (470)
                      +|++++++..++.++.++|+++..++    ..+++.+++++|.+. ..+++++.+-.|..++-.+|++. ..|..+..+.
T Consensus        83 lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~  160 (565)
T KOG0472|consen   83 LPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLS  160 (565)
T ss_pred             CCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHH
Confidence            45555555555555555555554443    555666666666665 45555666666666666666665 5666666677


Q ss_pred             CCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCC
Q 046000           80 SVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNT  159 (470)
Q Consensus        80 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~  159 (470)
                      +|..+++.+|.+. ..|..... |+.|++|+...|.+.       ..++.++.+.+|+.|++++|.+. .+|+  |..|+
T Consensus       161 ~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-------tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs  228 (565)
T KOG0472|consen  161 KLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE-------TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCS  228 (565)
T ss_pred             HHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh-------cCChhhcchhhhHHHHhhhcccc-cCCC--CCccH
Confidence            7777777777666 44434444 777888877776655       55677788888888888998888 7775  66788


Q ss_pred             CCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEc
Q 046000          160 KLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHL  239 (470)
Q Consensus       160 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  239 (470)
                      .|+++.++.|.|.-........+.++..|++.+|.++ +.|..+.. +..|.+||+++|.++ ..|..++++ +|++|.+
T Consensus       229 ~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~l  304 (565)
T KOG0472|consen  229 LLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLAL  304 (565)
T ss_pred             HHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCccc-cCCcccccc-eeeehhh
Confidence            8888888888887555566668888899999999888 78877765 777889999999888 577788888 8889999


Q ss_pred             cccccccccCccccCCC--cccEEe-------cCCCcC--------CCcchhhhcCcccccEEEccccccccccchhhcC
Q 046000          240 SKNNFSGELSTLFTGCV--SLWFLD-------RSHNNF--------HDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLK  302 (470)
Q Consensus       240 ~~~~~~~~~~~~~~~l~--~L~~L~-------l~~~~~--------~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~  302 (470)
                      .+|++...-.+.+++-.  -|+||.       ++...-        ....+.......+.+.+++++-+++......|..
T Consensus       305 eGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea  384 (565)
T KOG0472|consen  305 EGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEA  384 (565)
T ss_pred             cCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHH
Confidence            88876532221111100  011110       111100        0112223334566778888888887554444433


Q ss_pred             C--CCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccE
Q 046000          303 S--NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVH  380 (470)
Q Consensus       303 ~--~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~  380 (470)
                      .  .-+...+++.|++. ++|..+......++.+.+++|.++ .+|..+..+++|..|++++|.+.++|...+.+..|+.
T Consensus       385 ~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~  462 (565)
T KOG0472|consen  385 AKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQT  462 (565)
T ss_pred             hhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhhhcchhhhhhhhhhe
Confidence            2  23788999999997 889888888887778888888876 8899999999999999999999999999998889999


Q ss_pred             EEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCccc
Q 046000          381 LYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRI  460 (470)
Q Consensus       381 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~  460 (470)
                      |+++.|++. ..|+.+.....++++-.++|++....++.+.++.+|.+||+.+|.+. .+|..+++|.+|+.|+++||+|
T Consensus       463 LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  463 LNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             ecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCcc
Confidence            999999998 88999888899999999999999877888999999999999999998 6999999999999999999999


Q ss_pred             c
Q 046000          461 N  461 (470)
Q Consensus       461 ~  461 (470)
                      .
T Consensus       541 r  541 (565)
T KOG0472|consen  541 R  541 (565)
T ss_pred             C
Confidence            8

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-38  Score=286.11  Aligned_cols=364  Identities=23%  Similarity=0.238  Sum_probs=302.0

Q ss_pred             cCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEecc
Q 046000           13 NLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLS   87 (470)
Q Consensus        13 ~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~   87 (470)
                      .-+.||+|+|+++..-.     +++|+++++.+|.++ .+|......-+|+.|+|.+|.|.....+.++.++.|+.|||+
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            45679999999975544     999999999999999 678766677789999999999998888899999999999999


Q ss_pred             CccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEcc
Q 046000           88 NSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLT  167 (470)
Q Consensus        88 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~  167 (470)
                      .|.++ .++...+.+-.++++|++++|.++.+..      ..|..+.+|..|.+++|+++ .+|...|+++++|+.|++.
T Consensus       158 rN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~------~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLn  229 (873)
T KOG4194|consen  158 RNLIS-EIPKPSFPAKVNIKKLNLASNRITTLET------GHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLN  229 (873)
T ss_pred             hchhh-cccCCCCCCCCCceEEeecccccccccc------ccccccchheeeecccCccc-ccCHHHhhhcchhhhhhcc
Confidence            99998 6676678888899999999998875543      34556678999999999999 8999999899999999999


Q ss_pred             ccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccc
Q 046000          168 NNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGE  247 (470)
Q Consensus       168 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  247 (470)
                      .|.|.-.....+.++++|+.+.+..|.+. .+.+..|.++.++++|+++.|++......++-++.+|+.|++++|.|..+
T Consensus       230 rN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri  308 (873)
T KOG4194|consen  230 RNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI  308 (873)
T ss_pred             ccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee
Confidence            99988666778889999999999999988 78888888899999999999998877777888999999999999999988


Q ss_pred             cCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcc---hhH
Q 046000          248 LSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIP---HWI  324 (470)
Q Consensus       248 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~  324 (470)
                      ..+.|..+++|+.|+++.|+++......|..+..|+.|.+++|.+.......|..+++|++|+++.|.+.+.+-   ..+
T Consensus       309 h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f  388 (873)
T KOG4194|consen  309 HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF  388 (873)
T ss_pred             ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh
Confidence            88888889999999999999998888888889999999999999988888888899999999999998763332   233


Q ss_pred             HhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCc
Q 046000          325 ANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRND  387 (470)
Q Consensus       325 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~  387 (470)
                      ..+.. ++.|.+.+|++......+|..++.|++|||.+|.+-++.+..|...+|++|.+....
T Consensus       389 ~gl~~-LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSss  450 (873)
T KOG4194|consen  389 NGLPS-LRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSS  450 (873)
T ss_pred             ccchh-hhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccc
Confidence            33333 777777777776555566777777777777777777666666633377777665433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.3e-33  Score=256.61  Aligned_cols=364  Identities=25%  Similarity=0.316  Sum_probs=274.0

Q ss_pred             cccccccccccCC-CCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccCccCcCccChhhhccccccceec
Q 046000           32 ESFELNLAKNNIG-GHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLR  110 (470)
Q Consensus        32 ~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  110 (470)
                      -.+-.|+++|.++ +..|.....++.++.|.|..+++. ..|+.++.+.+|++|.+++|++....  ..++.++.||++.
T Consensus         8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh--GELs~Lp~LRsv~   84 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH--GELSDLPRLRSVI   84 (1255)
T ss_pred             eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh--hhhccchhhHHHh
Confidence            3344555555555 357888889999999999999887 78999999999999999999886333  3667777778777


Q ss_pred             ccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEec
Q 046000          111 LSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDV  190 (470)
Q Consensus       111 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l  190 (470)
                      +..|+++...     ++..+-.+..|+.||+++|+++ ++|.                         .+..-+++-.|++
T Consensus        85 ~R~N~LKnsG-----iP~diF~l~dLt~lDLShNqL~-EvP~-------------------------~LE~AKn~iVLNL  133 (1255)
T KOG0444|consen   85 VRDNNLKNSG-----IPTDIFRLKDLTILDLSHNQLR-EVPT-------------------------NLEYAKNSIVLNL  133 (1255)
T ss_pred             hhccccccCC-----CCchhcccccceeeecchhhhh-hcch-------------------------hhhhhcCcEEEEc
Confidence            7776655322     2222333344555555555544 4443                         3334445556666


Q ss_pred             cCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCC-
Q 046000          191 SSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFH-  269 (470)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-  269 (470)
                      ++|.+. .+|...+..+..|-+|++++|++. .+|+.++.+..|+.|.+++|++.......+..+.+|+.|.+++.+-+ 
T Consensus       134 S~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl  211 (1255)
T KOG0444|consen  134 SYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL  211 (1255)
T ss_pred             ccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh
Confidence            666666 777777777888888888888877 67777888888888899888877555555666777888888876543 


Q ss_pred             CcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhh
Q 046000          270 DQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQL  349 (470)
Q Consensus       270 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~  349 (470)
                      +.++.++..+.+|+.++++.|.+. ..|.++..+++|+.|++++|+++ ++......+.. ++.|++++|+++ ..|.++
T Consensus       212 ~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~-lEtLNlSrNQLt-~LP~av  287 (1255)
T KOG0444|consen  212 DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWEN-LETLNLSRNQLT-VLPDAV  287 (1255)
T ss_pred             hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhh-hhhhccccchhc-cchHHH
Confidence            356667778889999999998887 67888889999999999999887 55555555555 888888888887 788888


Q ss_pred             hccCCCeEEEccCccc--cCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCc
Q 046000          350 LNHGSLQLLSVSENCL--SGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLR  427 (470)
Q Consensus       350 ~~~~~L~~L~l~~~~l--~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~  427 (470)
                      +.++.|+.|...+|++  ..+|+.+..+.+|+.++..+|.+. ..|+.++.|..|+.|.|+.|.+. .+|+.+.-++.|+
T Consensus       288 cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~  365 (1255)
T KOG0444|consen  288 CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLK  365 (1255)
T ss_pred             hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcc
Confidence            8888888888888864  567777778888888888888887 88888888888888888888887 5788888888888


Q ss_pred             EEEccCcccC
Q 046000          428 VLLLRGNYLE  437 (470)
Q Consensus       428 ~L~l~~n~i~  437 (470)
                      .|++..|+-.
T Consensus       366 vLDlreNpnL  375 (1255)
T KOG0444|consen  366 VLDLRENPNL  375 (1255)
T ss_pred             eeeccCCcCc
Confidence            8888888743

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.97  E-value=2.4e-34  Score=247.71  Aligned_cols=442  Identities=25%  Similarity=0.312  Sum_probs=333.0

Q ss_pred             cccccccCCCcCceeeccCCCCCCccc----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcC
Q 046000            3 FLGAGLHKLKNLEALDLSFNNINGTVE----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNL   78 (470)
Q Consensus         3 ~l~~~l~~~~~L~~L~ls~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l   78 (470)
                      .+.+.+.++..|++|++++|++...++    +..+..++.++|++. ++|..++..+.|+.+++++|.+. ..|+.++.+
T Consensus        59 ~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~  136 (565)
T KOG0472|consen   59 VLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRL  136 (565)
T ss_pred             hccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHH
Confidence            345667788888888888888876666    777788888888888 67788888888888888888887 677788888


Q ss_pred             cCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcC
Q 046000           79 ASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNN  158 (470)
Q Consensus        79 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~  158 (470)
                      -.|+.++-.+|++. ..| ..+..+.++..+.+.++++.       ..++....++.|+++|...|.+. .+|+.+. .+
T Consensus       137 ~~l~dl~~~~N~i~-slp-~~~~~~~~l~~l~~~~n~l~-------~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg-~l  205 (565)
T KOG0472|consen  137 LDLEDLDATNNQIS-SLP-EDMVNLSKLSKLDLEGNKLK-------ALPENHIAMKRLKHLDCNSNLLE-TLPPELG-GL  205 (565)
T ss_pred             hhhhhhhccccccc-cCc-hHHHHHHHHHHhhccccchh-------hCCHHHHHHHHHHhcccchhhhh-cCChhhc-ch
Confidence            88888888888887 445 56777888888888888766       33444445678888888888777 7777654 67


Q ss_pred             CCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEE
Q 046000          159 TKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLH  238 (470)
Q Consensus       159 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  238 (470)
                      .+|.-|++..|++...+  .|..+..|.+++++.|.+. .+|......++++..||+.+|++. ..|..+.-+++|+.|+
T Consensus       206 ~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLD  281 (565)
T KOG0472|consen  206 ESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLD  281 (565)
T ss_pred             hhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhc
Confidence            88888888888887433  7778888999999998888 888888877888999999999988 6788888889999999


Q ss_pred             ccccccccccCccccCCCcccEEecCCCcCCCcchhhhcC-----cccccEEEccccccc---c----------ccchhh
Q 046000          239 LSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMN-----LTRLWFLYLDNNKFS---G----------KIEDGL  300 (470)
Q Consensus       239 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~l~l~~~~~~---~----------~~~~~~  300 (470)
                      +++|.++ ..+..++.+ .|++|-+.+|.+...-.+.+..     ++-|+. .+.+-+++   +          ......
T Consensus       282 lSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs-~~~~dglS~se~~~e~~~t~~~~~~~~~  358 (565)
T KOG0472|consen  282 LSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS-KIKDDGLSQSEGGTETAMTLPSESFPDI  358 (565)
T ss_pred             ccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH-hhccCCCCCCcccccccCCCCCCcccch
Confidence            9999887 556667777 8888888888775432222221     111111 00000110   0          011122


Q ss_pred             cCCCCccEEECCCCcccCCcchhHHhhhc--cccEEEcCCCcccCCCchhhhccCCCe-EEEccCccccCccccccccCc
Q 046000          301 LKSNQLKELDMSNNMLSGHIPHWIANFSS--YLEVLLMSKNFLKGNIPMQLLNHGSLQ-LLSVSENCLSGFMTSSFSLSS  377 (470)
Q Consensus       301 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~l~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~~~~~~  377 (470)
                      ....+.+.|++++-.++ .+|...+...+  -+..+++++|++. .+|..+..+..+. .+.+++|.+.-++.....+++
T Consensus       359 ~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~k  436 (565)
T KOG0472|consen  359 YAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQK  436 (565)
T ss_pred             hhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhc
Confidence            33457788888888887 66765555443  3778899999987 7777766655554 456677776655555557899


Q ss_pred             ccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccC
Q 046000          378 LVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSH  457 (470)
Q Consensus       378 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~  457 (470)
                      |..|++++|.+. .+|..+..+-.|+.|+++.|.+. .+|..+..+..++.+-.++|++....+..+.+|..|.+||+.+
T Consensus       437 Lt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n  514 (565)
T KOG0472|consen  437 LTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN  514 (565)
T ss_pred             ceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC
Confidence            999999999988 56777777888999999999988 6888888888889888899999988888899999999999999


Q ss_pred             cccccccCCCcc
Q 046000          458 NRINGSIPSCFT  469 (470)
Q Consensus       458 n~~~~~~p~~~~  469 (470)
                      |.+. .+|..+.
T Consensus       515 Ndlq-~IPp~Lg  525 (565)
T KOG0472|consen  515 NDLQ-QIPPILG  525 (565)
T ss_pred             Cchh-hCChhhc
Confidence            9988 6666554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=8.6e-33  Score=261.62  Aligned_cols=427  Identities=28%  Similarity=0.327  Sum_probs=306.8

Q ss_pred             cccCCCcCceeeccCCCCCCccc----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCc
Q 046000            7 GLHKLKNLEALDLSFNNINGTVE----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVE   82 (470)
Q Consensus         7 ~l~~~~~L~~L~ls~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~   82 (470)
                      +.++.-+|++||+++|++...+.    +..|+.|+++.|.+. ..|.+.+++.+|+++.|..|.+. ..|+.+..+.+|+
T Consensus        40 ~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~  117 (1081)
T KOG0618|consen   40 FVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQ  117 (1081)
T ss_pred             HhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhccc
Confidence            34455569999999999986666    889999999999998 56788999999999999999887 8999999999999


Q ss_pred             EEeccCccCcCccChhhhccccccceecccCCCCccccccc--------------cCCCCcccccCcccEEEccCccccC
Q 046000           83 YLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKT--------------ENFLPTFQLKHDLKYLDLSHNNLAG  148 (470)
Q Consensus        83 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--------------~~~~~~~~~~~~L~~L~l~~~~i~~  148 (470)
                      +|+++.|.+. ..| ..+..+..+..+..++| ........              ..+...+..+.+  .+++.+|.+. 
T Consensus       118 ~LdlS~N~f~-~~P-l~i~~lt~~~~~~~s~N-~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-  191 (1081)
T KOG0618|consen  118 YLDLSFNHFG-PIP-LVIEVLTAEEELAASNN-EKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-  191 (1081)
T ss_pred             ccccchhccC-CCc-hhHHhhhHHHHHhhhcc-hhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-
Confidence            9999999987 444 35555555555555554 11000000              011111212111  3666666544 


Q ss_pred             ccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhh
Q 046000          149 DFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSI  228 (470)
Q Consensus       149 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  228 (470)
                      .+   ....+++++.+....+++.....    .-++++.|+.+.|.+....+.   ....+|++++++.+.+. .+|+++
T Consensus       192 ~~---dls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~~---p~p~nl~~~dis~n~l~-~lp~wi  260 (1081)
T KOG0618|consen  192 VL---DLSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDVH---PVPLNLQYLDISHNNLS-NLPEWI  260 (1081)
T ss_pred             hh---hhhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeeccc---cccccceeeecchhhhh-cchHHH
Confidence            11   13345566666666555542111    224677777777776622211   12457888888888887 566888


Q ss_pred             cCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCC-Ccc
Q 046000          229 GDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSN-QLK  307 (470)
Q Consensus       229 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~L~  307 (470)
                      ..+++|+.+++..|.+. ..+..+....+|+++.+..|.+.. .+........|+.|++..|++....+..+.... +++
T Consensus       261 ~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~  338 (1081)
T KOG0618|consen  261 GACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLN  338 (1081)
T ss_pred             HhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHH
Confidence            88888888888888875 444445556777777777777654 333445578888888888888754444443333 367


Q ss_pred             EEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCC
Q 046000          308 ELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRN  386 (470)
Q Consensus       308 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~  386 (470)
                      .+..+.+++. ..|..-....+.++.|.+.+|.+++.....+.+...|+.|++++|.+..+|...+ +++.|++|+++||
T Consensus       339 ~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN  417 (1081)
T KOG0618|consen  339 TLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN  417 (1081)
T ss_pred             HHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc
Confidence            7777777765 4443333344448889999999998888889999999999999999999888777 8999999999999


Q ss_pred             cccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc-ccchhhccCCCCCeEEccCcc
Q 046000          387 DLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG-PISNQFCQLRRLGVMDLSHNR  459 (470)
Q Consensus       387 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~l~l~~n~  459 (470)
                      +++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|++.|+++. .++..+.. |.|++||++||.
T Consensus       418 kL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  418 KLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             hhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence            998 66788999999999999999998 566 68899999999999999986 44444433 899999999997

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=1.1e-31  Score=243.99  Aligned_cols=372  Identities=21%  Similarity=0.296  Sum_probs=299.5

Q ss_pred             hcCCCCcEEEccCCccc-cccchhhhcCcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcc
Q 046000           52 NNMTRLKVLDTSFNQLS-GSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTF  130 (470)
Q Consensus        52 ~~~~~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  130 (470)
                      +-+|-.+-+|+++|.+. +.+|.....++.++.|.|...++. ..| ..++.+.+|++|.+..|++..+       ...+
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vP-eEL~~lqkLEHLs~~HN~L~~v-------hGEL   74 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVP-EELSRLQKLEHLSMAHNQLISV-------HGEL   74 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hCh-HHHHHHhhhhhhhhhhhhhHhh-------hhhh
Confidence            34556677889999887 568888899999999999988876 555 6777777777777776654311       1112


Q ss_pred             cccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCC-ccCCCCCCCCcccEEeccCCcccCCCCcchhhhhcc
Q 046000          131 QLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTG-NLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQK  209 (470)
Q Consensus       131 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  209 (470)
                      .                         .++.|+.+.+..|++.. .++..+..+.-|+.|+++.|++. +.|..... -.+
T Consensus        75 s-------------------------~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~-AKn  127 (1255)
T KOG0444|consen   75 S-------------------------DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEY-AKN  127 (1255)
T ss_pred             c-------------------------cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhh-hcC
Confidence            2                         34455555555554432 23455566777888888888887 77877654 578


Q ss_pred             CceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccc
Q 046000          210 LLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDN  289 (470)
Q Consensus       210 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~  289 (470)
                      +-.|.+++|+|..+....|.++..|-+|++++|.+. ..|..+..+..|+.|.+++|.+.-.....+..+++|+.|.+++
T Consensus       128 ~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~  206 (1255)
T KOG0444|consen  128 SIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSN  206 (1255)
T ss_pred             cEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccc
Confidence            889999999998554456778999999999999987 5666678899999999999988655556677788888999998


Q ss_pred             cccc-cccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCc
Q 046000          290 NKFS-GKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGF  368 (470)
Q Consensus       290 ~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  368 (470)
                      .+-+ .-.|..+..+.+|+.++++.|.+. ..|+.+..+.. ++.|++++|.++ ..........+|++|+++.|+++.+
T Consensus       207 TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~-LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~L  283 (1255)
T KOG0444|consen  207 TQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRN-LRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVL  283 (1255)
T ss_pred             ccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhh-hheeccCcCcee-eeeccHHHHhhhhhhccccchhccc
Confidence            7543 346777888999999999999998 89999998888 999999999998 5555556677999999999999999


Q ss_pred             cccccccCcccEEEccCCcccc-cCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccC
Q 046000          369 MTSSFSLSSLVHLYVQRNDLSG-TIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQL  447 (470)
Q Consensus       369 ~~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l  447 (470)
                      |.....++.|+.|++.+|++.- -+|..++.+.+|+.+...+|.+. ..|+.+..|+.|+.|.|++|.+- .+|+.+.-+
T Consensus       284 P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL  361 (1255)
T KOG0444|consen  284 PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLL  361 (1255)
T ss_pred             hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhc
Confidence            9999999999999999999863 36888999999999999999998 89999999999999999999987 599999999


Q ss_pred             CCCCeEEccCcccccccCC
Q 046000          448 RRLGVMDLSHNRINGSIPS  466 (470)
Q Consensus       448 ~~L~~l~l~~n~~~~~~p~  466 (470)
                      +.|++||+.+|+-. ..|.
T Consensus       362 ~~l~vLDlreNpnL-VMPP  379 (1255)
T KOG0444|consen  362 PDLKVLDLRENPNL-VMPP  379 (1255)
T ss_pred             CCcceeeccCCcCc-cCCC
Confidence            99999999999876 5553

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.95  E-value=1e-30  Score=247.67  Aligned_cols=430  Identities=24%  Similarity=0.266  Sum_probs=261.1

Q ss_pred             cccccccCCCcCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhc
Q 046000            3 FLGAGLHKLKNLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVN   77 (470)
Q Consensus         3 ~l~~~l~~~~~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~   77 (470)
                      .+|.-+-.-..++.|++++|-+...+-     ...|..|++++|.+. ..|..+..+.+|+.|+++.|.|. ..|.+..+
T Consensus        12 ~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~   89 (1081)
T KOG0618|consen   12 LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSN   89 (1081)
T ss_pred             ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhh
Confidence            355555555557777777775543222     445777777777777 45666777777777777777776 66677777


Q ss_pred             CcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCc-------------
Q 046000           78 LASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHN-------------  144 (470)
Q Consensus        78 l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-------------  144 (470)
                      +.+|++|.|.+|.+. ..| ..++.+++|+.|+++.|.+...       +..+..+..++++..++|             
T Consensus        90 ~~~l~~lnL~~n~l~-~lP-~~~~~lknl~~LdlS~N~f~~~-------Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~  160 (1081)
T KOG0618|consen   90 MRNLQYLNLKNNRLQ-SLP-ASISELKNLQYLDLSFNHFGPI-------PLVIEVLTAEEELAASNNEKIQRLGQTSIKK  160 (1081)
T ss_pred             hhcchhheeccchhh-cCc-hhHHhhhcccccccchhccCCC-------chhHHhhhHHHHHhhhcchhhhhhccccchh
Confidence            777777777777765 444 5677777777777777766522       233333333444444444             


Q ss_pred             ------cccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCC
Q 046000          145 ------NLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANN  218 (470)
Q Consensus       145 ------~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  218 (470)
                            .+.+.++.+.- .+..  .+++++|.+.   ...+..+.+|+.+....+.+. .+.    ..-++++.|+.+.|
T Consensus       161 ~~l~~n~l~~~~~~~i~-~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-~l~----~~g~~l~~L~a~~n  229 (1081)
T KOG0618|consen  161 LDLRLNVLGGSFLIDIY-NLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS-ELE----ISGPSLTALYADHN  229 (1081)
T ss_pred             hhhhhhhcccchhcchh-hhhe--eeecccchhh---hhhhhhccchhhhhhhhcccc-eEE----ecCcchheeeeccC
Confidence                  22222221110 1111  2444444333   122223333444433333332 110    01234555555555


Q ss_pred             ccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccch
Q 046000          219 RFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIED  298 (470)
Q Consensus       219 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~  298 (470)
                      .+....+  -..-.+++.++++.+.+.... .++..+.+|+.++...|.+. ..+..+...++|+.+.+..|.+. ..+.
T Consensus       230 ~l~~~~~--~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~  304 (1081)
T KOG0618|consen  230 PLTTLDV--HPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPP  304 (1081)
T ss_pred             cceeecc--ccccccceeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCC
Confidence            5441111  112235666667666666433 66666777777777777663 34445555666677766666666 3444


Q ss_pred             hhcCCCCccEEECCCCcccCCcchhHHhhhc-cccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccC
Q 046000          299 GLLKSNQLKELDMSNNMLSGHIPHWIANFSS-YLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLS  376 (470)
Q Consensus       299 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~  376 (470)
                      ...+.+.|++|++..|.+. .+|+.+..... +++.+..+.+.+.......=...+.|+.|.+.+|.+++.....+ .++
T Consensus       305 ~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~  383 (1081)
T KOG0618|consen  305 FLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK  383 (1081)
T ss_pred             cccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccc
Confidence            4556777778888777776 55554443332 25566666666542221111235567888888888877655554 778


Q ss_pred             cccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEcc
Q 046000          377 SLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLS  456 (470)
Q Consensus       377 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~  456 (470)
                      +|+.|+|++|++.......+..++.|+.|++|+|+++ .+|+.+.+|..|++|...+|++. ..| .+..+++|+++|++
T Consensus       384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS  460 (1081)
T KOG0618|consen  384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLS  460 (1081)
T ss_pred             ceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecc
Confidence            8888888888887555567778888888888888888 56788888888888888888887 566 77788999999999


Q ss_pred             Ccccccc
Q 046000          457 HNRINGS  463 (470)
Q Consensus       457 ~n~~~~~  463 (470)
                      -|+++..
T Consensus       461 ~N~L~~~  467 (1081)
T KOG0618|consen  461 CNNLSEV  467 (1081)
T ss_pred             cchhhhh
Confidence            8888743

>PLN03210 Resistant to P

Probab=99.91  E-value=1.2e-22  Score=213.88  Aligned_cols=347  Identities=19%  Similarity=0.178  Sum_probs=238.5

Q ss_pred             hhhccccccceecccCCCCccccccccCCCCccccc-CcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccC
Q 046000           98 SSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLK-HDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQ  176 (470)
Q Consensus        98 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~  176 (470)
                      ..|..|.+|+.|.+..+...........++..+..+ ++|+.|.+.++.+. .+|..+  ...+|+.|++.++.+.. .+
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~-L~  627 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK-LW  627 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc-cc
Confidence            456777777777775543221111111223333333 46888888888776 777654  46788888888887763 44


Q ss_pred             CCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCC
Q 046000          177 LPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCV  256 (470)
Q Consensus       177 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~  256 (470)
                      ..+..+++|+.++++++.....+|.  ...+++|+.|++++|.....+|..+..+++|+.|++++|......+..+ .++
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~  704 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK  704 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence            5566788888888887765546664  2336788888888887665778888888888888888875444444433 578


Q ss_pred             cccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCccc------CCcchhHHhhhcc
Q 046000          257 SLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLS------GHIPHWIANFSSY  330 (470)
Q Consensus       257 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~~~~~~~~~~~~~  330 (470)
                      +|+.|++++|......+.   ...+|+.|+++++.+.. .+..+ .+++|+.|.+.++...      ...+......+++
T Consensus       705 sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s  779 (1153)
T PLN03210        705 SLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS  779 (1153)
T ss_pred             CCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhhcccc
Confidence            888888888765433222   24578888888887763 33332 5677888877764321      0112222333455


Q ss_pred             ccEEEcCCCcccCCCchhhhccCCCeEEEccCcc-ccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCC
Q 046000          331 LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENC-LSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRD  409 (470)
Q Consensus       331 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~  409 (470)
                      ++.|++++|.....+|..+..+++|+.|++++|. +..+|... .+++|++|++++|......|..   .++|+.|++++
T Consensus       780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~  855 (1153)
T PLN03210        780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSR  855 (1153)
T ss_pred             chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCC
Confidence            8889998887666788888889999999998874 55555443 6788999999988655444432   36788999999


Q ss_pred             ccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccc
Q 046000          410 NGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRIN  461 (470)
Q Consensus       410 n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~  461 (470)
                      |.+. .+|..+..+++|+.|++++|+--..++..+..+++|+.+++++|.-.
T Consensus       856 n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L  906 (1153)
T PLN03210        856 TGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL  906 (1153)
T ss_pred             CCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence            9887 57778888999999999887655567777888888999998888643

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=7e-26  Score=195.32  Aligned_cols=416  Identities=19%  Similarity=0.206  Sum_probs=274.2

Q ss_pred             eccCCCCCCccc--cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccC-ccCcCc
Q 046000           18 DLSFNNINGTVE--SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSN-SYFEGT   94 (470)
Q Consensus        18 ~ls~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~-~~~~~~   94 (470)
                      |.++-.+...+.  -+.-+++.|..|.|+.+.+.+|+.+++|+.|||++|.|+.+.|++|..+++|.+|-+.+ |+|+ .
T Consensus        52 dCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~  130 (498)
T KOG4237|consen   52 DCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-D  130 (498)
T ss_pred             EccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-h
Confidence            334444444444  55667899999999999999999999999999999999999999999999988877766 8888 7


Q ss_pred             cChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccC-C
Q 046000           95 FPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFT-G  173 (470)
Q Consensus        95 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~-~  173 (470)
                      .+...|.++.+++.|.+..+++......      .+..++++..|.+.+|.+. .++...+..+..++.+.+..+... .
T Consensus       131 l~k~~F~gL~slqrLllNan~i~Cir~~------al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icd  203 (498)
T KOG4237|consen  131 LPKGAFGGLSSLQRLLLNANHINCIRQD------ALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICD  203 (498)
T ss_pred             hhhhHhhhHHHHHHHhcChhhhcchhHH------HHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccc
Confidence            7888999999999999999887765543      3555677899999999888 777766777788888877665421 0


Q ss_pred             -----------ccCCCCCCCCcccEEeccCCcccCCCCcchhh-hhccCceeeccCCccCCCCc-hhhcCCCCccEEEcc
Q 046000          174 -----------NLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGI-ILQKLLYIDMANNRFEGNLP-SSIGDMKTLTFLHLS  240 (470)
Q Consensus       174 -----------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~  240 (470)
                                 ..+..++...-..-..+.+..+. ..+...+. ....+..-..+.+.....-| ..|..+++|+.|+++
T Consensus       204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~-q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls  282 (498)
T KOG4237|consen  204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRIN-QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS  282 (498)
T ss_pred             cccchhhhHHhhchhhcccceecchHHHHHHHhc-ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccC
Confidence                       01111111111111222222222 11221111 11122111122222222222 458889999999999


Q ss_pred             ccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCc
Q 046000          241 KNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHI  320 (470)
Q Consensus       241 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  320 (470)
                      +|.++.+...+|.+...+++|.+.+|++.......|..+..|+.|++.+|+|+...+..|....+|.+|.+-.|++....
T Consensus       283 nN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC  362 (498)
T KOG4237|consen  283 NNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC  362 (498)
T ss_pred             CCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence            99999888889999999999999999988777778888999999999999999888888888999999999888765222


Q ss_pred             -chhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccc-------------ccccCcccEEEccCC
Q 046000          321 -PHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTS-------------SFSLSSLVHLYVQRN  386 (470)
Q Consensus       321 -~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-------------~~~~~~L~~L~l~~~  386 (470)
                       ..|+..|...-.   ..+     ..+.  ...-.++.+.+++..+.+....             ...++-+.+..=..|
T Consensus       363 ~l~wl~~Wlr~~~---~~~-----~~~C--q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSn  432 (498)
T KOG4237|consen  363 RLAWLGEWLRKKS---VVG-----NPRC--QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSN  432 (498)
T ss_pred             chHHHHHHHhhCC---CCC-----CCCC--CCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcc
Confidence             234444432111   111     1111  1122344455544433222111             112444444433333


Q ss_pred             cccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCc
Q 046000          387 DLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHN  458 (470)
Q Consensus       387 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n  458 (470)
                      +....+|..+.  ..-+.+++.+|.++ .+|..  .+.+| .+++++|++...--..|.++.+|.+|-|+.|
T Consensus       433 k~lk~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  433 KLLKLLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             cchhhcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            33334444432  34667888888888 45544  56677 7889999888666678888888888887765

>PLN03210 Resistant to P

Probab=99.90  E-value=3.1e-22  Score=210.62  Aligned_cols=341  Identities=18%  Similarity=0.150  Sum_probs=183.9

Q ss_pred             chHhhhcCCCCcEEEccCCc------cccccchhhhcCc-CCcEEeccCccCcCccChhhhccccccceecccCCCCccc
Q 046000           47 LLDCLNNMTRLKVLDTSFNQ------LSGSLPSVIVNLA-SVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNML  119 (470)
Q Consensus        47 ~~~~~~~~~~L~~L~l~~~~------i~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  119 (470)
                      .+.+|.++++|+.|.+.++.      +...+|..+..++ +|+.|.+.++++. .+|. .+ ...+|+.|++.++.+...
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~-~f-~~~~L~~L~L~~s~l~~L  626 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPS-NF-RPENLVKLQMQGSKLEKL  626 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCC-cC-CccCCcEEECcCcccccc
Confidence            34567777777777775542      2223455555553 4777777777665 4442 22 356677777776655422


Q ss_pred             cccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCC
Q 046000          120 QLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKL  199 (470)
Q Consensus       120 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~  199 (470)
                             ...+..+++|+.++++++...+.+|.  +..+++|+.|++++|......+..+..+++|+.|++++|...+.+
T Consensus       627 -------~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~L  697 (1153)
T PLN03210        627 -------WDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL  697 (1153)
T ss_pred             -------ccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCcc
Confidence                   22344556677777776654335554  445667777777766544445556666677777777776544455


Q ss_pred             CcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCC-------cc
Q 046000          200 PQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHD-------QI  272 (470)
Q Consensus       200 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-------~~  272 (470)
                      |...  .++.|++|++++|......|..   ..+|+.|+++++.+... +..+ .+++|++|.+.++....       ..
T Consensus       698 p~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~l-P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~  770 (1153)
T PLN03210        698 PTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEF-PSNL-RLENLDELILCEMKSEKLWERVQPLT  770 (1153)
T ss_pred             CCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccc-cccc-cccccccccccccchhhccccccccc
Confidence            5543  3566777777766543333321   34566677766665432 2222 35556666555432111       00


Q ss_pred             hhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhcc
Q 046000          273 FPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNH  352 (470)
Q Consensus       273 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~  352 (470)
                      ......+++|+.|++++|......+..+..+++|+.|++++|...+.+|... .+ .+++.|++++|......|..   .
T Consensus       771 ~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L-~sL~~L~Ls~c~~L~~~p~~---~  845 (1153)
T PLN03210        771 PLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NL-ESLESLDLSGCSRLRTFPDI---S  845 (1153)
T ss_pred             hhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Cc-cccCEEECCCCCcccccccc---c
Confidence            1111223556666666655444455555666666666666654333444433 22 23566666665433233321   2


Q ss_pred             CCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCcc
Q 046000          353 GSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNG  411 (470)
Q Consensus       353 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~  411 (470)
                      ++|+.|++++|.++.+|.....+++|+.|++.+|.-...++..+..+++|+.+++++|.
T Consensus       846 ~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        846 TNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            45666666666666555544455666666666544332344445555666666666554

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.83  E-value=7e-20  Score=179.46  Aligned_cols=261  Identities=23%  Similarity=0.216  Sum_probs=125.2

Q ss_pred             CcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEcc
Q 046000          161 LEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLS  240 (470)
Q Consensus       161 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  240 (470)
                      -..|++++++++. ++..+.  ++|+.|.+.+|.++ .+|..    +++|++|++++|.+. .+|..   .++|+.|+++
T Consensus       203 ~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt-~LP~l----p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls  270 (788)
T PRK15387        203 NAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPAL----PPELRTLEVSGNQLT-SLPVL---PPGLLELSIF  270 (788)
T ss_pred             CcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCC-CCCCC----CCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence            3445555555442 122221  24555555555554 34431    345555555555554 22321   2345555555


Q ss_pred             ccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCc
Q 046000          241 KNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHI  320 (470)
Q Consensus       241 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  320 (470)
                      +|.+.... ..   ..+|+.|++++|++.....    ..++|+.|++++|.+.+. +.   ...+|+.|.+++|.+. .+
T Consensus       271 ~N~L~~Lp-~l---p~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~N~L~-~L  337 (788)
T PRK15387        271 SNPLTHLP-AL---PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT-SL  337 (788)
T ss_pred             CCchhhhh-hc---hhhcCEEECcCCccccccc----cccccceeECCCCccccC-CC---CcccccccccccCccc-cc
Confidence            55544221 11   1345555555555543211    124555555555555432 11   1234555555555554 33


Q ss_pred             chhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCC
Q 046000          321 PHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSS  400 (470)
Q Consensus       321 ~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~  400 (470)
                      |.    .+..|+.|++++|.++ .+|..   ..+|+.|++++|.+..++..   .++|+.|++++|++.. +|..   .+
T Consensus       338 P~----lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s  402 (788)
T PRK15387        338 PT----LPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LPVL---PS  402 (788)
T ss_pred             cc----cccccceEecCCCccC-CCCCC---CcccceehhhccccccCccc---ccccceEEecCCcccC-CCCc---cc
Confidence            32    2223556666666555 23321   23455556666665554432   2456666666666552 2221   24


Q ss_pred             CccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccCC
Q 046000          401 KLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPS  466 (470)
Q Consensus       401 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~  466 (470)
                      +|+.|++++|++.. +|..   +.+|+.|++++|+++ .+|..+.+++.|+.|++++|++++.+|.
T Consensus       403 ~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        403 ELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             CCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            56666666666553 3332   234555666666665 4555566666666666666666655544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.83  E-value=1.3e-22  Score=175.35  Aligned_cols=254  Identities=22%  Similarity=0.228  Sum_probs=165.3

Q ss_pred             CcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccc-cccccccCccccCCCcccEE
Q 046000          183 DFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSK-NNFSGELSTLFTGCVSLWFL  261 (470)
Q Consensus       183 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L  261 (470)
                      +.-.++++..|.++ .+|...|..+++|+.|+++.|.|..+.|.+|.+++++..|.+.+ |.|++.....|.++..++.|
T Consensus        67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            34566777777777 77777777777777777777777777777777777777766655 77777777777777777777


Q ss_pred             ecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCc-chhHHh--------------
Q 046000          262 DRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHI-PHWIAN--------------  326 (470)
Q Consensus       262 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~--------------  326 (470)
                      .+..|++.......|..++++..|.+.+|.+.......+..+..++.+.+..|++.... -.|.+.              
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc  225 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC  225 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence            77777777666677777777777777777776555556667777777776666522000 000000              


Q ss_pred             ---------------------hhccccEEEcCCCcccCCCc-hhhhccCCCeEEEccCccccCcccccc-ccCcccEEEc
Q 046000          327 ---------------------FSSYLEVLLMSKNFLKGNIP-MQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYV  383 (470)
Q Consensus       327 ---------------------~~~~l~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l  383 (470)
                                           ..+.+..--.+.+......| ..|..+++|+.|++++|+++.+....| ....+++|++
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L  305 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL  305 (498)
T ss_pred             cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence                                 00000000111221222222 346667777777777777777766666 5677777777


Q ss_pred             cCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccC
Q 046000          384 QRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLE  437 (470)
Q Consensus       384 ~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~  437 (470)
                      ..|++.......|.++.+|++|+|.+|+|+...|..|....+|.+|++-.|++-
T Consensus       306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            777776555566777777777777777777777777777777777777777664

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.82  E-value=2.4e-19  Score=175.67  Aligned_cols=267  Identities=24%  Similarity=0.276  Sum_probs=198.4

Q ss_pred             CcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCcee
Q 046000          134 HDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYI  213 (470)
Q Consensus       134 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  213 (470)
                      ..-..|+++++.++ .+|..+.   ++++.|++.+|+++....    .+++|++|++++|.++ .+|..    .++|++|
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L  267 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT-SLPVL----PPGLLEL  267 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccC-cccCc----cccccee
Confidence            34567888888887 7777553   478888998888875332    2578899999998887 66642    4688899


Q ss_pred             eccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccc
Q 046000          214 DMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFS  293 (470)
Q Consensus       214 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  293 (470)
                      ++.+|.+. .+|..   ..+|+.|++++|.+.... .   ..++|++|++++|.+.....    ....|+.|++++|.+.
T Consensus       268 ~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~LP-~---~p~~L~~LdLS~N~L~~Lp~----lp~~L~~L~Ls~N~L~  335 (788)
T PRK15387        268 SIFSNPLT-HLPAL---PSGLCKLWIFGNQLTSLP-V---LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLT  335 (788)
T ss_pred             eccCCchh-hhhhc---hhhcCEEECcCCcccccc-c---cccccceeECCCCccccCCC----CcccccccccccCccc
Confidence            99888876 34432   356888899998877432 2   24679999999988875321    1346788888888887


Q ss_pred             cccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc
Q 046000          294 GKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF  373 (470)
Q Consensus       294 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  373 (470)
                      . .+.   ...+|+.|++++|++. .+|..    +..++.|++++|.+. .+|..   ..+|+.|++++|.+..++..  
T Consensus       336 ~-LP~---lp~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l--  400 (788)
T PRK15387        336 S-LPT---LPSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVL--  400 (788)
T ss_pred             c-ccc---cccccceEecCCCccC-CCCCC----Ccccceehhhccccc-cCccc---ccccceEEecCCcccCCCCc--
Confidence            4 332   2357999999999987 55542    344888899999887 45543   35799999999999877653  


Q ss_pred             ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhcc
Q 046000          374 SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQ  446 (470)
Q Consensus       374 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  446 (470)
                       .++|+.|++++|.+.. +|..   ..+|+.|++++|+++ .+|+.+..+++|+.|+|++|++++..+..+..
T Consensus       401 -~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        401 -PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             -ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence             4689999999999984 4543   357889999999998 67888999999999999999999876666533

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.79  E-value=9.5e-20  Score=167.51  Aligned_cols=273  Identities=23%  Similarity=0.226  Sum_probs=165.7

Q ss_pred             EeccCCcccCCCCcchhhhhccCceeeccCCccCC----CCchhhcCCCCccEEEcccccccc------ccCccccCCCc
Q 046000          188 LDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEG----NLPSSIGDMKTLTFLHLSKNNFSG------ELSTLFTGCVS  257 (470)
Q Consensus       188 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~~~~l~~  257 (470)
                      |+++.+.+.+..-...+..+..|+.++++++.+..    .++..+...+.++.++++++.+..      .....+..+++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~   82 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG   82 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence            33444444322223333345556666666665532    123344455666666666665441      11234455667


Q ss_pred             ccEEecCCCcCCCcchhhhcCccc---ccEEEccccccccc----cchhhcCC-CCccEEECCCCcccCCcchhHHhhh-
Q 046000          258 LWFLDRSHNNFHDQIFPKYMNLTR---LWFLYLDNNKFSGK----IEDGLLKS-NQLKELDMSNNMLSGHIPHWIANFS-  328 (470)
Q Consensus       258 L~~L~l~~~~~~~~~~~~~~~~~~---L~~l~l~~~~~~~~----~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~-  328 (470)
                      |+.|++++|.+.......+..+.+   |+.+++++|.+.+.    ....+..+ ++|+++++++|.+.+.....+.... 
T Consensus        83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  162 (319)
T cd00116          83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR  162 (319)
T ss_pred             eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence            777777777766544444443333   77777777766522    12234455 7788888888877643333222221 


Q ss_pred             --ccccEEEcCCCcccCC----CchhhhccCCCeEEEccCccccCcccccc-----ccCcccEEEccCCcccccCccchh
Q 046000          329 --SYLEVLLMSKNFLKGN----IPMQLLNHGSLQLLSVSENCLSGFMTSSF-----SLSSLVHLYVQRNDLSGTIPNALF  397 (470)
Q Consensus       329 --~~l~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-----~~~~L~~L~l~~~~l~~~~~~~l~  397 (470)
                        ..+++|++++|.+.+.    ++..+...++|+.|++++|.+.+.....+     .+++|++|++++|.+.+.....+.
T Consensus       163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~  242 (319)
T cd00116         163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA  242 (319)
T ss_pred             hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence              2378888888877632    23334556688899998888765443221     578899999999988753333222


Q ss_pred             -----cCCCccEEEcCCcccee----ecchhhhcCCCCcEEEccCcccCcc----cchhhccC-CCCCeEEccCccc
Q 046000          398 -----RSSKLMTLDLRDNGFSG----IISDQINESSNLRVLLLRGNYLEGP----ISNQFCQL-RRLGVMDLSHNRI  460 (470)
Q Consensus       398 -----~~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~i~~~----~~~~~~~l-~~L~~l~l~~n~~  460 (470)
                           ..+.|+.|++++|.+++    .+...+..+++|+.+++++|.+.+.    ....+... +.|+.+++.+|++
T Consensus       243 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence                 23789999999998862    2334566678899999999999854    44445455 7888999988874

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.73  E-value=2.3e-17  Score=162.90  Aligned_cols=246  Identities=20%  Similarity=0.265  Sum_probs=136.3

Q ss_pred             CCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEc
Q 046000          160 KLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHL  239 (470)
Q Consensus       160 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  239 (470)
                      +...|++++++++... ..+  .++++.|++++|.+. .+|...+   ++|+.|++++|.+. .+|..+.  ++|+.|++
T Consensus       179 ~~~~L~L~~~~LtsLP-~~I--p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKILGLTTIP-ACI--PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMEL  248 (754)
T ss_pred             CceEEEeCCCCcCcCC-ccc--ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence            4566777766665322 112  245777777777766 5665442   46777777777766 3444332  35777777


Q ss_pred             cccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCC
Q 046000          240 SKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGH  319 (470)
Q Consensus       240 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  319 (470)
                      ++|.+... +..+  ..+|+.|++++|.+.. ++..+.  ++|+.|++++|++... +..+  .++|+.|++++|.+. .
T Consensus       249 s~N~L~~L-P~~l--~s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~L-P~~l--p~sL~~L~Ls~N~Lt-~  318 (754)
T PRK15370        249 SINRITEL-PERL--PSALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTL-PAHL--PSGITHLNVQSNSLT-A  318 (754)
T ss_pred             cCCccCcC-ChhH--hCCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccC-cccc--hhhHHHHHhcCCccc-c
Confidence            77766532 3222  1356777777666653 222222  4666677766666532 2211  235666666666665 3


Q ss_pred             cchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcC
Q 046000          320 IPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRS  399 (470)
Q Consensus       320 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~  399 (470)
                      +|..+   +.+++.|++++|.++ .+|..+  +++|+.|++++|.+..++...  .++|++|++++|.+. .+|..+.  
T Consensus       319 LP~~l---~~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--  387 (754)
T PRK15370        319 LPETL---PPGLKTLEAGENALT-SLPASL--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALT-NLPENLP--  387 (754)
T ss_pred             CCccc---cccceeccccCCccc-cCChhh--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCC-CCCHhHH--
Confidence            44322   233666666666665 344443  356666666666666554432  246666666666666 3343332  


Q ss_pred             CCccEEEcCCccceeecchhh----hcCCCCcEEEccCcccC
Q 046000          400 SKLMTLDLRDNGFSGIISDQI----NESSNLRVLLLRGNYLE  437 (470)
Q Consensus       400 ~~L~~L~l~~n~l~~~~~~~~----~~~~~L~~L~l~~n~i~  437 (470)
                      .+|+.|++++|++. .+|+.+    ..++++..+++.+|++.
T Consensus       388 ~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        388 AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            35666666666665 333332    22356666666666665

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=1.2e-18  Score=160.20  Aligned_cols=280  Identities=24%  Similarity=0.276  Sum_probs=159.2

Q ss_pred             EEEccCccccCccchHhhhcCCCCcEEEccccccCCc----cCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCcee
Q 046000          138 YLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGN----LQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYI  213 (470)
Q Consensus       138 ~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  213 (470)
                      .|++.++.+.+.--...+..+..++.++++++.++..    ....+...+.+++++++++.+.. .+..+          
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~----------   70 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGL----------   70 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHH----------
Confidence            3556666665333334455666678888877776431    12223344556666666655431 11110          


Q ss_pred             eccCCccCCCCchhhcCCCCccEEEccccccccccCccccCC---CcccEEecCCCcCCCcc----hhhhcCc-ccccEE
Q 046000          214 DMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGC---VSLWFLDRSHNNFHDQI----FPKYMNL-TRLWFL  285 (470)
Q Consensus       214 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~----~~~~~~~-~~L~~l  285 (470)
                              ...+..+..+++|+.|++++|.+....+..+..+   ++|++|++++|.+.+..    ...+..+ ++|+.+
T Consensus        71 --------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L  142 (319)
T cd00116          71 --------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL  142 (319)
T ss_pred             --------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEE
Confidence                    0112233444455555555554443222222222   23666666665554311    1223344 666666


Q ss_pred             Eccccccccc----cchhhcCCCCccEEECCCCcccCCcchhHHhhh---ccccEEEcCCCcccCC----CchhhhccCC
Q 046000          286 YLDNNKFSGK----IEDGLLKSNQLKELDMSNNMLSGHIPHWIANFS---SYLEVLLMSKNFLKGN----IPMQLLNHGS  354 (470)
Q Consensus       286 ~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~l~~L~l~~~~~~~~----~~~~~~~~~~  354 (470)
                      ++++|.+.+.    ....+..+++|++|++++|.+.+.....+....   ..++.|++++|.+.+.    +...+..+++
T Consensus       143 ~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~  222 (319)
T cd00116         143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS  222 (319)
T ss_pred             EcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCC
Confidence            6666665522    223344556777777777776643222222111   2477777777776532    2344556788


Q ss_pred             CeEEEccCccccCcccccc------ccCcccEEEccCCccccc----CccchhcCCCccEEEcCCccceee----cchhh
Q 046000          355 LQLLSVSENCLSGFMTSSF------SLSSLVHLYVQRNDLSGT----IPNALFRSSKLMTLDLRDNGFSGI----ISDQI  420 (470)
Q Consensus       355 L~~L~l~~~~l~~~~~~~~------~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~----~~~~~  420 (470)
                      |++|++++|.+.+.....+      ..+.|++|++++|.+++.    ....+..+++|+.+++++|.+...    ....+
T Consensus       223 L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~  302 (319)
T cd00116         223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESL  302 (319)
T ss_pred             CCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHH
Confidence            9999999998876433222      137999999999998632    234556668999999999999754    34444


Q ss_pred             hcC-CCCcEEEccCccc
Q 046000          421 NES-SNLRVLLLRGNYL  436 (470)
Q Consensus       421 ~~~-~~L~~L~l~~n~i  436 (470)
                      ... +.|+++++.+|++
T Consensus       303 ~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         303 LEPGNELESLWVKDDSF  319 (319)
T ss_pred             hhcCCchhhcccCCCCC
Confidence            445 7899999988864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.71  E-value=4.3e-17  Score=161.05  Aligned_cols=246  Identities=24%  Similarity=0.319  Sum_probs=162.6

Q ss_pred             cccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceee
Q 046000          135 DLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYID  214 (470)
Q Consensus       135 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  214 (470)
                      +...|+++++.++ .+|..+   .+.++.|++++|+++.... .  .+.+|+.|++++|.+. .+|..+   .+.|+.|+
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsLP~-~--l~~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L~  247 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELKSLPE-N--LQGNIKTLYANSNQLT-SIPATL---PDTIQEME  247 (754)
T ss_pred             CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcCCh-h--hccCCCEEECCCCccc-cCChhh---hccccEEE
Confidence            4566777777666 556533   2457777777777664322 1  2246777777777766 555543   24677777


Q ss_pred             ccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcccccccc
Q 046000          215 MANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSG  294 (470)
Q Consensus       215 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  294 (470)
                      +++|.+. .+|..+.  .+|+.|++++|.+.. .+..+  .++|+.|++++|.+.... ..+  .++|+.|++++|.+..
T Consensus       248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt~LP-~~l--p~sL~~L~Ls~N~Lt~  318 (754)
T PRK15370        248 LSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIRTLP-AHL--PSGITHLNVQSNSLTA  318 (754)
T ss_pred             CcCCccC-cCChhHh--CCCCEEECcCCccCc-ccccc--CCCCcEEECCCCccccCc-ccc--hhhHHHHHhcCCcccc
Confidence            7777776 4555443  467777777777763 33322  246788888887776422 222  2467778888887774


Q ss_pred             ccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccc
Q 046000          295 KIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFS  374 (470)
Q Consensus       295 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  374 (470)
                      . +..+  .++|+.|++++|.+. .+|..+   +++++.|++++|.+. .+|..+  .++|+.|++++|.+..++...  
T Consensus       319 L-P~~l--~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l--  386 (754)
T PRK15370        319 L-PETL--PPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENL--  386 (754)
T ss_pred             C-Cccc--cccceeccccCCccc-cCChhh---cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhH--
Confidence            3 3222  367888888888877 466543   345888999988886 566655  468999999999988877654  


Q ss_pred             cCcccEEEccCCcccccCccch----hcCCCccEEEcCCccce
Q 046000          375 LSSLVHLYVQRNDLSGTIPNAL----FRSSKLMTLDLRDNGFS  413 (470)
Q Consensus       375 ~~~L~~L~l~~~~l~~~~~~~l----~~~~~L~~L~l~~n~l~  413 (470)
                      ...|+.|++++|++. .+|..+    ..++.+..+++.+|++.
T Consensus       387 ~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        387 PAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            247889999999987 444433    34578889999999987

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=1.6e-17  Score=127.56  Aligned_cols=160  Identities=29%  Similarity=0.449  Sum_probs=87.9

Q ss_pred             CCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEE
Q 046000          303 SNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLY  382 (470)
Q Consensus       303 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~  382 (470)
                      +..++.|.+++|+++ .+|..++.+.. ++.|++.+|++. ..|..+.+++.|+.|+++-|.+...|.....+|.|+.|+
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~n-levln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld  108 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKN-LEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhh-hhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence            344445555555554 44444554444 555555555554 455555555555555555555555555544555555555


Q ss_pred             ccCCccc-ccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccc
Q 046000          383 VQRNDLS-GTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRIN  461 (470)
Q Consensus       383 l~~~~l~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~  461 (470)
                      +..|.+. ...|..|..+..|+.|++++|.+. .+|..++.+++|+.|.+++|.+- .+|..++.+.+|+.|.+++|+++
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence            5555543 224455555566666666666655 45555566666666666666554 35555666666666666666655


Q ss_pred             cccCCCc
Q 046000          462 GSIPSCF  468 (470)
Q Consensus       462 ~~~p~~~  468 (470)
                       .+|.++
T Consensus       187 -vlppel  192 (264)
T KOG0617|consen  187 -VLPPEL  192 (264)
T ss_pred             -ecChhh
Confidence             555443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.50  E-value=4.5e-16  Score=119.63  Aligned_cols=163  Identities=26%  Similarity=0.432  Sum_probs=126.6

Q ss_pred             CcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeE
Q 046000          278 NLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQL  357 (470)
Q Consensus       278 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~  357 (470)
                      ++..++.+.+++|+++ ..+..+..+.+|+.|.+.+|.+. ++|..+..+++ ++.|+++.|++. ..|..|++++.|+.
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~k-lr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPK-LRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchh-hhheecchhhhh-cCccccCCCchhhh
Confidence            3456667777777777 45556777888888888888887 78888888877 888888888876 77888888888888


Q ss_pred             EEccCccccC--ccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcc
Q 046000          358 LSVSENCLSG--FMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNY  435 (470)
Q Consensus       358 L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  435 (470)
                      ||+++|.+.+  +|...|.+..|+.|++..|.+. .+|..+..+.+|+.|.+.+|.+. ..|..++.++.|++|.+.+|+
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence            8888887653  4555557888888888888887 77777888888888888888887 577778888888888888888


Q ss_pred             cCcccchhhccC
Q 046000          436 LEGPISNQFCQL  447 (470)
Q Consensus       436 i~~~~~~~~~~l  447 (470)
                      ++ .+|-.++.+
T Consensus       185 l~-vlppel~~l  195 (264)
T KOG0617|consen  185 LT-VLPPELANL  195 (264)
T ss_pred             ee-ecChhhhhh
Confidence            87 455444443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.36  E-value=2.3e-13  Score=116.92  Aligned_cols=230  Identities=23%  Similarity=0.233  Sum_probs=121.8

Q ss_pred             hccCceeeccCCccCC----CCchhhcCCCCccEEEccccccc---cc-------cCccccCCCcccEEecCCCcCCCcc
Q 046000          207 LQKLLYIDMANNRFEG----NLPSSIGDMKTLTFLHLSKNNFS---GE-------LSTLFTGCVSLWFLDRSHNNFHDQI  272 (470)
Q Consensus       207 ~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~---~~-------~~~~~~~l~~L~~L~l~~~~~~~~~  272 (470)
                      ...++++++++|.+..    .+...+...+.|+..++++-.-.   ..       ...++.++++|+++++|+|-+....
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            4578888888888762    23344566677887777764221   11       1234556778888888888776644


Q ss_pred             hhh----hcCcccccEEEccccccccccchh-------------hcCCCCccEEECCCCcccCCcchhHHhhh---cccc
Q 046000          273 FPK----YMNLTRLWFLYLDNNKFSGKIEDG-------------LLKSNQLKELDMSNNMLSGHIPHWIANFS---SYLE  332 (470)
Q Consensus       273 ~~~----~~~~~~L~~l~l~~~~~~~~~~~~-------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~l~  332 (470)
                      ...    +.++..|+.|++.+|.+.......             ...-+.|+.+...+|++.......++...   +.++
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le  188 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE  188 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence            443    346778888888888776332222             22335667777776666533333332222   1245


Q ss_pred             EEEcCCCcccCC----CchhhhccCCCeEEEccCccccCcccccc-----ccCcccEEEccCCcccccCccch----h-c
Q 046000          333 VLLMSKNFLKGN----IPMQLLNHGSLQLLSVSENCLSGFMTSSF-----SLSSLVHLYVQRNDLSGTIPNAL----F-R  398 (470)
Q Consensus       333 ~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-----~~~~L~~L~l~~~~l~~~~~~~l----~-~  398 (470)
                      .+.+..|.+...    ....+..|+.|+.||+++|.++.......     .+++|++|++..|-+......++    . .
T Consensus       189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~  268 (382)
T KOG1909|consen  189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES  268 (382)
T ss_pred             eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence            555555544311    22334455566666666655544433332     34455555555555543322211    1 2


Q ss_pred             CCCccEEEcCCccceee----cchhhhcCCCCcEEEccCccc
Q 046000          399 SSKLMTLDLRDNGFSGI----ISDQINESSNLRVLLLRGNYL  436 (470)
Q Consensus       399 ~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~i  436 (470)
                      .|+|+++.+.+|.++..    +...+...|.|+.|+|++|.+
T Consensus       269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            35555555555555321    111223345555555555555

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.35  E-value=8e-13  Score=113.63  Aligned_cols=234  Identities=22%  Similarity=0.240  Sum_probs=161.8

Q ss_pred             hhcCCCCccEEEccccccccccC----ccccCCCcccEEecCCCcC---CCcchh-------hhcCcccccEEEcccccc
Q 046000          227 SIGDMKTLTFLHLSKNNFSGELS----TLFTGCVSLWFLDRSHNNF---HDQIFP-------KYMNLTRLWFLYLDNNKF  292 (470)
Q Consensus       227 ~l~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~---~~~~~~-------~~~~~~~L~~l~l~~~~~  292 (470)
                      .+..+.+++.+++++|.+.....    ..+...++|+..++++-..   .+.+++       .+..+++|+++++++|-+
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            45677899999999998875433    4455667888888876422   222222       344677999999999877


Q ss_pred             ccccc----hhhcCCCCccEEECCCCcccCCcchhHH------------hhhccccEEEcCCCcccCC----Cchhhhcc
Q 046000          293 SGKIE----DGLLKSNQLKELDMSNNMLSGHIPHWIA------------NFSSYLEVLLMSKNFLKGN----IPMQLLNH  352 (470)
Q Consensus       293 ~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------~~~~~l~~L~l~~~~~~~~----~~~~~~~~  352 (470)
                      ....+    ..+..+..|++|.+.+|.+.-.....++            ..+..++++.+.+|++.+.    +...+...
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~  184 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH  184 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence            64333    4456688999999999987622222211            1223488888888887532    33456677


Q ss_pred             CCCeEEEccCccccCcccccc-----ccCcccEEEccCCccccc----CccchhcCCCccEEEcCCccceeecch----h
Q 046000          353 GSLQLLSVSENCLSGFMTSSF-----SLSSLVHLYVQRNDLSGT----IPNALFRSSKLMTLDLRDNGFSGIISD----Q  419 (470)
Q Consensus       353 ~~L~~L~l~~~~l~~~~~~~~-----~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~----~  419 (470)
                      +.|+.+.++.|.+..-+....     ++++|+.|+++.|-++..    ...+++.+++|+.|++++|-+...-..    .
T Consensus       185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a  264 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA  264 (382)
T ss_pred             cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence            889999998888765544221     688999999998887633    335667778899999999987643222    2


Q ss_pred             h-hcCCCCcEEEccCcccCc----ccchhhccCCCCCeEEccCccc
Q 046000          420 I-NESSNLRVLLLRGNYLEG----PISNQFCQLRRLGVMDLSHNRI  460 (470)
Q Consensus       420 ~-~~~~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~l~l~~n~~  460 (470)
                      + ...|+|++|.+.+|.|+.    ++...+...|.|+.|++++|.+
T Consensus       265 l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  265 LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            2 346889999999998864    4555666788899999999887

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.32  E-value=3e-12  Score=103.25  Aligned_cols=122  Identities=25%  Similarity=0.254  Sum_probs=47.5

Q ss_pred             ccEEEcCCCcccCCCchhhh-ccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccch-hcCCCccEEEcC
Q 046000          331 LEVLLMSKNFLKGNIPMQLL-NHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNAL-FRSSKLMTLDLR  408 (470)
Q Consensus       331 l~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l-~~~~~L~~L~l~  408 (470)
                      +++|++.+|.+.. + +.+. .+.+|+.|++++|.++.+.. ...+++|++|++++|+++.. .+.+ ..+|+|+.|+++
T Consensus        21 ~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~   96 (175)
T PF14580_consen   21 LRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYLS   96 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S--CHHHHHH-TT--EEE-T
T ss_pred             ccccccccccccc-c-cchhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEECc
Confidence            6788888888762 2 3343 46788888888888877653 22578888888888888744 3333 457888888888


Q ss_pred             Cccceee-cchhhhcCCCCcEEEccCcccCccc---chhhccCCCCCeEEcc
Q 046000          409 DNGFSGI-ISDQINESSNLRVLLLRGNYLEGPI---SNQFCQLRRLGVMDLS  456 (470)
Q Consensus       409 ~n~l~~~-~~~~~~~~~~L~~L~l~~n~i~~~~---~~~~~~l~~L~~l~l~  456 (470)
                      +|++... ....+..+++|+.|++.+|++...-   ...+..+|+|+.||-.
T Consensus        97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            8887542 2245677888888888888887421   1356667888887653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=9e-13  Score=116.55  Aligned_cols=210  Identities=24%  Similarity=0.221  Sum_probs=119.7

Q ss_pred             cCCCCccEEEccccccccccC-ccccCCCcccEEecCCCcCCC--cchhhhcCcccccEEEccccccccccch-hhcCCC
Q 046000          229 GDMKTLTFLHLSKNNFSGELS-TLFTGCVSLWFLDRSHNNFHD--QIFPKYMNLTRLWFLYLDNNKFSGKIED-GLLKSN  304 (470)
Q Consensus       229 ~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~  304 (470)
                      .++..|+++.++++.+..... .....|++++.|+++.|-+..  ........+|+|+.|+++.|++...... .-..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            355667777777776553322 344567777777777775544  1223334567777777777765522111 122456


Q ss_pred             CccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc--ccCcccEEE
Q 046000          305 QLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF--SLSSLVHLY  382 (470)
Q Consensus       305 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~--~~~~L~~L~  382 (470)
                      .++.|.++.|.+...--.++....++++.|.+..|...........-+..|+.|||++|.+.+.+....  .++.|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            677777777776533334444444457777777664211112222335567777777777666553332  677777777


Q ss_pred             ccCCcccccC-ccc-----hhcCCCccEEEcCCcccee-ecchhhhcCCCCcEEEccCcccCc
Q 046000          383 VQRNDLSGTI-PNA-----LFRSSKLMTLDLRDNGFSG-IISDQINESSNLRVLLLRGNYLEG  438 (470)
Q Consensus       383 l~~~~l~~~~-~~~-----l~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~i~~  438 (470)
                      ++.|++..+. |+.     ...+++|+.|++..|++.. .....+..+++|+.|.+-.|++..
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            7777765331 111     2345777777777777642 122345566677777777776653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.26  E-value=1.5e-12  Score=109.70  Aligned_cols=137  Identities=20%  Similarity=0.174  Sum_probs=105.6

Q ss_pred             hhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCC
Q 046000          322 HWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSK  401 (470)
Q Consensus       322 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~  401 (470)
                      ..+-.|.. ++.+++++|.++ .+.+.+.-.|.++.|++++|.+..+.. ...+++|+.|++++|.++.. ..+=..+-+
T Consensus       278 ~~~dTWq~-LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~-~Gwh~KLGN  353 (490)
T KOG1259|consen  278 VSADTWQE-LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAEC-VGWHLKLGN  353 (490)
T ss_pred             EecchHhh-hhhccccccchh-hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhh-hhhHhhhcC
Confidence            33334444 888999999887 677777778899999999999887766 33678999999999988733 333345678


Q ss_pred             ccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc-ccchhhccCCCCCeEEccCcccccccC
Q 046000          402 LMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG-PISNQFCQLRRLGVMDLSHNRINGSIP  465 (470)
Q Consensus       402 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~l~l~~n~~~~~~p  465 (470)
                      .++|.+++|.+.+.  +.+..+-+|..||+++|+|.. .-...++++|+|+.+.+.+|++. .+|
T Consensus       354 IKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~-~~v  415 (490)
T KOG1259|consen  354 IKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA-GSV  415 (490)
T ss_pred             EeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc-ccc
Confidence            88999999988743  567888899999999999875 23356888999999999999987 444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=2.3e-12  Score=114.04  Aligned_cols=164  Identities=25%  Similarity=0.257  Sum_probs=95.4

Q ss_pred             hcCCCCcEEEccCCccccccc-hhhhcCcCCcEEeccCccCcCccCh-hhhccccccceecccCCCCccccccccCCCCc
Q 046000           52 NNMTRLKVLDTSFNQLSGSLP-SVIVNLASVEYLDLSNSYFEGTFPI-SSLANHSKLKVLRLSSRNNNMLQLKTENFLPT  129 (470)
Q Consensus        52 ~~~~~L~~L~l~~~~i~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  129 (470)
                      +++..|+.+.|+++.+..... .....|++++.|+++.|-+....+. .....+++|+.|+++.|.+.........    
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~----  193 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT----  193 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch----
Confidence            567788888888887763221 3667788888888888877655443 3455678888888888766533222111    


Q ss_pred             ccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcc-hhhhhc
Q 046000          130 FQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQD-KGIILQ  208 (470)
Q Consensus       130 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~  208 (470)
                       ...++|+.|.++.|.++..-..++...+|+++.|++..|...........-+..|++|++++|.+. .++.. ....++
T Consensus       194 -~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~  271 (505)
T KOG3207|consen  194 -LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLP  271 (505)
T ss_pred             -hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-cccccccccccc
Confidence             133567777777776663333344456666777776666322222333344555666666666555 33311 111255


Q ss_pred             cCceeeccCCccC
Q 046000          209 KLLYIDMANNRFE  221 (470)
Q Consensus       209 ~L~~L~l~~~~~~  221 (470)
                      .|..|.++.+.+.
T Consensus       272 ~L~~Lnls~tgi~  284 (505)
T KOG3207|consen  272 GLNQLNLSSTGIA  284 (505)
T ss_pred             chhhhhccccCcc
Confidence            5555555555544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.23  E-value=3e-12  Score=107.84  Aligned_cols=221  Identities=21%  Similarity=0.246  Sum_probs=150.6

Q ss_pred             hccCceeeccCCc--------cCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcC
Q 046000          207 LQKLLYIDMANNR--------FEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMN  278 (470)
Q Consensus       207 ~~~L~~L~l~~~~--------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  278 (470)
                      +.+|++|.+++..        +...+|-.+..+++|+.+.++.+.-..+. .....-|.|+.+.+....+.+.  +.+..
T Consensus       181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~-~~~~~kptl~t~~v~~s~~~~~--~~l~p  257 (490)
T KOG1259|consen  181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIV-DIELLKPTLQTICVHNTTIQDV--PSLLP  257 (490)
T ss_pred             hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhhee-ceeecCchhheeeeeccccccc--ccccc
Confidence            5577777776542        11233444556677888888776543221 1122336677776665443321  11111


Q ss_pred             cccccEEEcccc---ccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCC
Q 046000          279 LTRLWFLYLDNN---KFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSL  355 (470)
Q Consensus       279 ~~~L~~l~l~~~---~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L  355 (470)
                      ...+  .+....   ...|........+..|+++++++|.+. .+.+++.-.++ ++.|++++|.+..  ...+..+++|
T Consensus       258 e~~~--~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pk-ir~L~lS~N~i~~--v~nLa~L~~L  331 (490)
T KOG1259|consen  258 ETIL--ADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPK-LRRLILSQNRIRT--VQNLAELPQL  331 (490)
T ss_pred             hhhh--cCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhhhccc-eeEEeccccceee--ehhhhhcccc
Confidence            1111  122111   112223334455678999999999987 77777777777 9999999999862  2337779999


Q ss_pred             eEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceee-cchhhhcCCCCcEEEccCc
Q 046000          356 QLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGI-ISDQINESSNLRVLLLRGN  434 (470)
Q Consensus       356 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n  434 (470)
                      +.||+++|.+..+..+...+-+.++|.+.+|.+.+.  ..+..+-+|..||+++|+|... -...++++|.|+.+.|.+|
T Consensus       332 ~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N  409 (490)
T KOG1259|consen  332 QLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN  409 (490)
T ss_pred             eEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence            999999999998887777889999999999999643  4567778899999999998643 2346899999999999999


Q ss_pred             ccCc
Q 046000          435 YLEG  438 (470)
Q Consensus       435 ~i~~  438 (470)
                      ++.+
T Consensus       410 Pl~~  413 (490)
T KOG1259|consen  410 PLAG  413 (490)
T ss_pred             Cccc
Confidence            9984

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.23  E-value=5.6e-12  Score=101.65  Aligned_cols=104  Identities=29%  Similarity=0.344  Sum_probs=25.2

Q ss_pred             ccCCCcCceeeccCCCCCCccc----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhh-hcCcCCc
Q 046000            8 LHKLKNLEALDLSFNNINGTVE----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVI-VNLASVE   82 (470)
Q Consensus         8 l~~~~~L~~L~ls~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~-~~l~~L~   82 (470)
                      +.+..+++.|+|++|+|.....    +.+|+.|++++|.+++.  +.+..+++|++|++++|.|+. +.+.+ ..+++|+
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~   91 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred             cccccccccccccccccccccchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence            4445566777777776653322    44556666666666642  235556666666666666653 22223 3456666


Q ss_pred             EEeccCccCcCccChhhhccccccceecccCC
Q 046000           83 YLDLSNSYFEGTFPISSLANHSKLKVLRLSSR  114 (470)
Q Consensus        83 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  114 (470)
                      +|++++|.+.+......+..+++|+.|++.+|
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N  123 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGN  123 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence            66666666553333333444444444444443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.13  E-value=4.9e-12  Score=115.64  Aligned_cols=193  Identities=28%  Similarity=0.380  Sum_probs=134.3

Q ss_pred             cccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEc
Q 046000          257 SLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLM  336 (470)
Q Consensus       257 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l  336 (470)
                      .-...+++.|++.+ .+..+..+..|+.+.++.|.+- ..+..+..+..|..++++.|++. ..|..++.++  |+.+-+
T Consensus        76 dt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp--Lkvli~  150 (722)
T KOG0532|consen   76 DTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP--LKVLIV  150 (722)
T ss_pred             chhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc--ceeEEE
Confidence            33445666666543 3344445556666666666555 45566677777777888887776 7777777666  777777


Q ss_pred             CCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeec
Q 046000          337 SKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGII  416 (470)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~  416 (470)
                      ++|+++ .+|+.+...+.|..||.+.|++..+++....+.+|+.|++..|.+. .+|+.+. .-.|..||++.|++. .+
T Consensus       151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~i  226 (722)
T KOG0532|consen  151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YL  226 (722)
T ss_pred             ecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ec
Confidence            777776 6777777777888888888888888887777888888888888887 4444444 456788888888887 57


Q ss_pred             chhhhcCCCCcEEEccCcccCcccchhhc---cCCCCCeEEccCcc
Q 046000          417 SDQINESSNLRVLLLRGNYLEGPISNQFC---QLRRLGVMDLSHNR  459 (470)
Q Consensus       417 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~---~l~~L~~l~l~~n~  459 (470)
                      |-.|..|..|++|-|.+|++.. -|..++   ...-.|+|+.+-|+
T Consensus       227 Pv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  227 PVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             chhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence            7778888888888888888873 343333   23555677777664

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.12  E-value=4e-12  Score=116.24  Aligned_cols=178  Identities=29%  Similarity=0.387  Sum_probs=149.2

Q ss_pred             cccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEE
Q 046000          279 LTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLL  358 (470)
Q Consensus       279 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L  358 (470)
                      +..-...+++.|+.. ..+..+..+..|+.+.++.|.+. .+|..+..+.. ++.++++.|++. ..|..++.++ |+.|
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~-lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEA-LTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhH-HHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            344456677778776 55666677778899999999887 88888888877 889999999987 6777776555 9999


Q ss_pred             EccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc
Q 046000          359 SVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG  438 (470)
Q Consensus       359 ~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~  438 (470)
                      -+++|+++.++......+.|..|+.+.|.+. .+|..+.++.+|+.|.+..|.+. .+|+.+. .-.|..||+++|++. 
T Consensus       149 i~sNNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-  224 (722)
T KOG0532|consen  149 IVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-  224 (722)
T ss_pred             EEecCccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-
Confidence            9999999999988888889999999999998 66777889999999999999988 4666666 556899999999999 


Q ss_pred             ccchhhccCCCCCeEEccCcccccccCC
Q 046000          439 PISNQFCQLRRLGVMDLSHNRINGSIPS  466 (470)
Q Consensus       439 ~~~~~~~~l~~L~~l~l~~n~~~~~~p~  466 (470)
                      .+|-.|++|+.|++|-|.+|+++ .-|+
T Consensus       225 ~iPv~fr~m~~Lq~l~LenNPLq-SPPA  251 (722)
T KOG0532|consen  225 YLPVDFRKMRHLQVLQLENNPLQ-SPPA  251 (722)
T ss_pred             ecchhhhhhhhheeeeeccCCCC-CChH
Confidence            79999999999999999999987 6554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.11  E-value=1.4e-10  Score=109.70  Aligned_cols=153  Identities=30%  Similarity=0.381  Sum_probs=73.7

Q ss_pred             CccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEcc
Q 046000          305 QLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQ  384 (470)
Q Consensus       305 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~  384 (470)
                      +|+.|++++|.+. .++..+..++. ++.|++++|.+. .++......+.|+.|++++|++.+++.......+|+++.+.
T Consensus       141 nL~~L~l~~N~i~-~l~~~~~~l~~-L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~  217 (394)
T COG4886         141 NLKELDLSDNKIE-SLPSPLRNLPN-LKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLS  217 (394)
T ss_pred             hcccccccccchh-hhhhhhhcccc-ccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhc
Confidence            4444444444443 33333333333 444444444443 33332224455555555555555555443233445555555


Q ss_pred             CCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCccccccc
Q 046000          385 RNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSI  464 (470)
Q Consensus       385 ~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~  464 (470)
                      +|.+. ..+..+..+.++..+.+.+|++.. .+..++.+++++.|++++|+++....  +..+..++.|++++|.++...
T Consensus       218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         218 NNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             CCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccccccc--ccccCccCEEeccCccccccc
Confidence            55432 233344455555555555555542 23445555556666666665553222  555555566666665555433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.05  E-value=2e-10  Score=76.16  Aligned_cols=59  Identities=34%  Similarity=0.456  Sum_probs=30.0

Q ss_pred             CccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcc
Q 046000          401 KLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNR  459 (470)
Q Consensus       401 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~  459 (470)
                      +|++|++++|++....++.|.++++|++|++++|.++...+.+|.++++|+.|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            44555555555554444445555555555555555554444455555555555555554

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.04  E-value=2.9e-10  Score=115.04  Aligned_cols=129  Identities=27%  Similarity=0.321  Sum_probs=93.3

Q ss_pred             cCCCcCceeeccCCCCC---Ccccccccccccccccc--CCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcE
Q 046000            9 HKLKNLEALDLSFNNIN---GTVESQESFELNLAKNN--IGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEY   83 (470)
Q Consensus         9 ~~~~~L~~L~ls~~~~~---~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~   83 (470)
                      .+....|...+-++++.   +...++.|+.|-+..+.  +....+..|..+|.|++|||++|.--..+|+.++.+-+|++
T Consensus       520 ~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             cchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            34456677777777654   44447789999998886  66566777889999999999988766689999999999999


Q ss_pred             EeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCcc
Q 046000           84 LDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNN  145 (470)
Q Consensus        84 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  145 (470)
                      |+++++.+. .+| ..+.++++|.+|++..+..-.      ........+++||+|.+....
T Consensus       600 L~L~~t~I~-~LP-~~l~~Lk~L~~Lnl~~~~~l~------~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  600 LDLSDTGIS-HLP-SGLGNLKKLIYLNLEVTGRLE------SIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccccCCCcc-ccc-hHHHHHHhhheeccccccccc------cccchhhhcccccEEEeeccc
Confidence            999999887 666 678888888888887653210      112223336667777665554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.03  E-value=3.5e-10  Score=74.98  Aligned_cols=61  Identities=33%  Similarity=0.431  Sum_probs=53.3

Q ss_pred             CcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCccc
Q 046000          376 SSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYL  436 (470)
Q Consensus       376 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i  436 (470)
                      |+|++|++++|++....+.+|..+++|++|++++|++....++.|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5788999999999877778888899999999999999888888889999999999999875

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.00  E-value=3.7e-10  Score=114.20  Aligned_cols=127  Identities=26%  Similarity=0.379  Sum_probs=72.3

Q ss_pred             CcccEEEccCccccCccchHhhhcCCCCcEEEccccc--cCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCc
Q 046000          134 HDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNS--FTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLL  211 (470)
Q Consensus       134 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~--i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  211 (470)
                      ...++..+.++.+. .++..  ..+++|++|-+.++.  +.......+..++.|+.|++++|.-.+.+|..+.. +-+|+
T Consensus       523 ~~~rr~s~~~~~~~-~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~Lr  598 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLR  598 (889)
T ss_pred             hheeEEEEeccchh-hccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhhh
Confidence            44556666555554 33332  134456666666553  33222333555666666666665544466666554 56666


Q ss_pred             eeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCC
Q 046000          212 YIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSH  265 (470)
Q Consensus       212 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  265 (470)
                      +|+++++.+. .+|..++.++.|.+|++..+......+.....+++|++|.+..
T Consensus       599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence            6666666666 5666666666666666666554444445455566666666544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.98  E-value=1.2e-09  Score=103.51  Aligned_cols=150  Identities=32%  Similarity=0.294  Sum_probs=61.9

Q ss_pred             cccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEc
Q 046000          257 SLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLM  336 (470)
Q Consensus       257 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l  336 (470)
                      +|+.|++++|.+... +..+..+++|+.|++++|++.. .+......+.|+.+++++|++. .+|........ ++++.+
T Consensus       141 nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~-L~~l~~  216 (394)
T COG4886         141 NLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSA-LEELDL  216 (394)
T ss_pred             hcccccccccchhhh-hhhhhccccccccccCCchhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhh-hhhhhh
Confidence            344444444443321 1233344444444444444441 1211223444445555555444 33333222221 444444


Q ss_pred             CCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccce
Q 046000          337 SKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFS  413 (470)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~  413 (470)
                      ++|... ..+..+.....+..+.+.+|++...+.....++++++|++++|.++....  +....+++.|+++++.+.
T Consensus       217 ~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         217 SNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             cCCcce-ecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc--ccccCccCEEeccCcccc
Confidence            444321 23333444444444444444444433222234445555555555543322  444455555555555443

>PLN03150 hypothetical protein; Provisional

Probab=98.98  E-value=8.2e-10  Score=109.32  Aligned_cols=111  Identities=27%  Similarity=0.440  Sum_probs=77.6

Q ss_pred             CeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccC
Q 046000          355 LQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRG  433 (470)
Q Consensus       355 L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  433 (470)
                      ++.|+|++|.+....+..+ .+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|+.+..+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            5667777777664433333 667777777777777777777777777777777777777777777777777777777777


Q ss_pred             cccCcccchhhccC-CCCCeEEccCcccccccC
Q 046000          434 NYLEGPISNQFCQL-RRLGVMDLSHNRINGSIP  465 (470)
Q Consensus       434 n~i~~~~~~~~~~l-~~L~~l~l~~n~~~~~~p  465 (470)
                      |++.+.+|..+... ..+..+++.+|+.....|
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCC
Confidence            77777777766653 355677777776555444

>PLN03150 hypothetical protein; Provisional

Probab=98.94  E-value=2.4e-09  Score=106.11  Aligned_cols=92  Identities=27%  Similarity=0.464  Sum_probs=72.3

Q ss_pred             cccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEcc
Q 046000          377 SLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLS  456 (470)
Q Consensus       377 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~  456 (470)
                      .++.|+|++|.+.+..|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+.++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36777888888777777777777888888888888777777777778888888888888877778888888888888888


Q ss_pred             CcccccccCCCc
Q 046000          457 HNRINGSIPSCF  468 (470)
Q Consensus       457 ~n~~~~~~p~~~  468 (470)
                      +|++++.+|..+
T Consensus       499 ~N~l~g~iP~~l  510 (623)
T PLN03150        499 GNSLSGRVPAAL  510 (623)
T ss_pred             CCcccccCChHH
Confidence            888888877654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=4.2e-10  Score=95.03  Aligned_cols=110  Identities=17%  Similarity=0.109  Sum_probs=55.6

Q ss_pred             cccCcccEEEccCccccCccchHhh-hcCCCCcEEEcccccc--C-CccCCCCCCCCcccEEeccCCcc-cCCCCcchhh
Q 046000          131 QLKHDLKYLDLSHNNLAGDFPAWIL-QNNTKLEVLCLTNNSF--T-GNLQLPHSKHDFLHHLDVSSNNF-TGKLPQDKGI  205 (470)
Q Consensus       131 ~~~~~L~~L~l~~~~i~~~~~~~~~-~~~~~L~~L~l~~~~i--~-~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~  205 (470)
                      ..++.|.+|++++|..+.+....+. .-.+++..|+++++.-  . +....-...+++|.+|++++|.. +......++ 
T Consensus       257 ~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-  335 (419)
T KOG2120|consen  257 SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-  335 (419)
T ss_pred             HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-
Confidence            3344455555555544322221111 1223455555555421  1 01111223566777777776643 222222222 


Q ss_pred             hhccCceeeccCCccCCCCchh---hcCCCCccEEEccccc
Q 046000          206 ILQKLLYIDMANNRFEGNLPSS---IGDMKTLTFLHLSKNN  243 (470)
Q Consensus       206 ~~~~L~~L~l~~~~~~~~~~~~---l~~l~~L~~L~l~~~~  243 (470)
                      .++.|++++++.|..  +.|..   +...|+|+.|++-++-
T Consensus       336 kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  336 KFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            377888888888864  24443   4567888888887764

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.74  E-value=4.4e-10  Score=106.11  Aligned_cols=126  Identities=25%  Similarity=0.183  Sum_probs=92.3

Q ss_pred             ccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCc
Q 046000          331 LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDN  410 (470)
Q Consensus       331 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n  410 (470)
                      +...+++.|.+. .+...+.-++.++.|+|++|++.+.. ..-.++.|++|+++.|.+.........+|. |..|.+++|
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN  242 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN  242 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence            556667777765 55666667788888888888887766 233688888888888888744334444555 888888888


Q ss_pred             cceeecchhhhcCCCCcEEEccCcccCc-ccchhhccCCCCCeEEccCcccc
Q 046000          411 GFSGIISDQINESSNLRVLLLRGNYLEG-PISNQFCQLRRLGVMDLSHNRIN  461 (470)
Q Consensus       411 ~l~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~l~l~~n~~~  461 (470)
                      .++..  ..+.++.+|+.||++.|-+.+ .-...+..+..|+.|+|.||++-
T Consensus       243 ~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  243 ALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             HHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            88743  447888888899999888764 23345667788888899988874

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.73  E-value=1.5e-09  Score=102.81  Aligned_cols=104  Identities=25%  Similarity=0.272  Sum_probs=44.4

Q ss_pred             hccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEE
Q 046000          207 LQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLY  286 (470)
Q Consensus       207 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~  286 (470)
                      +..++.+++.+|.+... ...+..+++|+.|++++|.++....  +..++.|+.|++++|.+..  ...+..++.|+.++
T Consensus        94 ~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~  168 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISD--ISGLESLKSLKLLD  168 (414)
T ss_pred             ccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchh--ccCCccchhhhccc
Confidence            44555555555555421 1113445555555555555443221  2333345555555554433  22222344444444


Q ss_pred             ccccccccccc-hhhcCCCCccEEECCCCcc
Q 046000          287 LDNNKFSGKIE-DGLLKSNQLKELDMSNNML  316 (470)
Q Consensus       287 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~  316 (470)
                      +++|.+..... . ...+.+++.+.+.+|.+
T Consensus       169 l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  169 LSYNRIVDIENDE-LSELISLEELDLGGNSI  198 (414)
T ss_pred             CCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence            44444442211 1 23344444444444443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=8.2e-10  Score=93.31  Aligned_cols=175  Identities=21%  Similarity=0.156  Sum_probs=103.9

Q ss_pred             cccEEEccccccccc-cchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCc-ccC-CCchhhhccCCCeE
Q 046000          281 RLWFLYLDNNKFSGK-IEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNF-LKG-NIPMQLLNHGSLQL  357 (470)
Q Consensus       281 ~L~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~-~~~-~~~~~~~~~~~L~~  357 (470)
                      .++.++++...++.. .-..+..+.+|+.|.+.++++.+.+...++.-.. ++.++++.|. ++. ...-.+.+|..|..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~-L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSN-LVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccc-ceeeccccccccchhHHHHHHHhhhhHhh
Confidence            355555555554421 1223445666666666666666555555555444 6666666553 221 12234567888888


Q ss_pred             EEccCccccCcccccc---ccCcccEEEccCCccc---ccCccchhcCCCccEEEcCCccc-eeecchhhhcCCCCcEEE
Q 046000          358 LSVSENCLSGFMTSSF---SLSSLVHLYVQRNDLS---GTIPNALFRSSKLMTLDLRDNGF-SGIISDQINESSNLRVLL  430 (470)
Q Consensus       358 L~l~~~~l~~~~~~~~---~~~~L~~L~l~~~~l~---~~~~~~l~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~  430 (470)
                      |+++.|.+........   --++|++|+++|+.-.   ..+..-...||+|..|||++|.. .......|..++-|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            8888887654332222   2477888888877532   11122235678888888888863 333334456778888888


Q ss_pred             ccCcccCcccchh---hccCCCCCeEEccCc
Q 046000          431 LRGNYLEGPISNQ---FCQLRRLGVMDLSHN  458 (470)
Q Consensus       431 l~~n~i~~~~~~~---~~~l~~L~~l~l~~n  458 (470)
                      ++.|..-  +|+.   +...|+|.+|++.|+
T Consensus       345 lsRCY~i--~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  345 LSRCYDI--IPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence            8888653  4554   445678888887765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.68  E-value=2.8e-08  Score=83.12  Aligned_cols=90  Identities=23%  Similarity=0.270  Sum_probs=51.3

Q ss_pred             hcCCCCccEEEccccccccccCccc----cCCCcccEEecCCCcCC---Ccc-------hhhhcCcccccEEEccccccc
Q 046000          228 IGDMKTLTFLHLSKNNFSGELSTLF----TGCVSLWFLDRSHNNFH---DQI-------FPKYMNLTRLWFLYLDNNKFS  293 (470)
Q Consensus       228 l~~l~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~---~~~-------~~~~~~~~~L~~l~l~~~~~~  293 (470)
                      +..+..++.+++++|.+......++    ..-.+|+..++++-...   +..       ...+..||+|+.+++++|-+.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            3457788888888888875544333    34466777666653221   111       123445666777777666554


Q ss_pred             cccc----hhhcCCCCccEEECCCCccc
Q 046000          294 GKIE----DGLLKSNQLKELDMSNNMLS  317 (470)
Q Consensus       294 ~~~~----~~~~~~~~L~~L~l~~~~~~  317 (470)
                      ...+    +.+..-+.|++|.+++|.+.
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCC
Confidence            3322    33445566666666666543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.68  E-value=4.7e-09  Score=88.82  Aligned_cols=82  Identities=18%  Similarity=0.224  Sum_probs=59.3

Q ss_pred             ccCcccEEEccCCcccccCc-cchhcCCCccEEEcCCcccee-ecchhhhcCCCCcEEEccCcccCcccch------hhc
Q 046000          374 SLSSLVHLYVQRNDLSGTIP-NALFRSSKLMTLDLRDNGFSG-IISDQINESSNLRVLLLRGNYLEGPISN------QFC  445 (470)
Q Consensus       374 ~~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~i~~~~~~------~~~  445 (470)
                      -+|++..+-+..|.+.+... +.....|.+.-|+++.+++.+ ...+.+.+++.|..|.++++++.+....      .++
T Consensus       197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa  276 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA  276 (418)
T ss_pred             hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence            47888888888888764432 345566777888999998864 2345678899999999999998764443      355


Q ss_pred             cCCCCCeEEc
Q 046000          446 QLRRLGVMDL  455 (470)
Q Consensus       446 ~l~~L~~l~l  455 (470)
                      .++.+++|+=
T Consensus       277 RL~~v~vLNG  286 (418)
T KOG2982|consen  277 RLTKVQVLNG  286 (418)
T ss_pred             eccceEEecC
Confidence            6777777753

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.66  E-value=2.1e-09  Score=95.16  Aligned_cols=280  Identities=18%  Similarity=0.087  Sum_probs=127.1

Q ss_pred             cccccccccccCCCC--chHhhhcCCCCcEEEccCCc-cccccchhh-hcCcCCcEEeccCcc-CcCccChhhhcccccc
Q 046000           32 ESFELNLAKNNIGGH--LLDCLNNMTRLKVLDTSFNQ-LSGSLPSVI-VNLASVEYLDLSNSY-FEGTFPISSLANHSKL  106 (470)
Q Consensus        32 ~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~-i~~~~~~~~-~~l~~L~~L~l~~~~-~~~~~~~~~l~~~~~L  106 (470)
                      .|+.|.++++.-.+.  .-....++|++++|++.+|. +++..-..+ ..|++|++|++..|. +++.........|++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            445555555543322  11223456666666666553 222211112 245666666666643 3322222234446666


Q ss_pred             ceecccCCCCccccccccCCCCcccccCcccEEEccCccccC-ccchHhhhcCCCCcEEEccccc-cCCccC-CCCCCCC
Q 046000          107 KVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAG-DFPAWILQNNTKLEVLCLTNNS-FTGNLQ-LPHSKHD  183 (470)
Q Consensus       107 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~~~~~~~~L~~L~l~~~~-i~~~~~-~~~~~~~  183 (470)
                      ++++++.|.--    ......+...++..++.+...||.-.+ .....+...+..+.++++..|. +++... ..-..+.
T Consensus       219 ~~lNlSwc~qi----~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~  294 (483)
T KOG4341|consen  219 KYLNLSWCPQI----SGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH  294 (483)
T ss_pred             HHhhhccCchh----hcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence            66666655321    112222233444445555555542110 1111111233345555544442 221111 1112345


Q ss_pred             cccEEeccCCcccC-CCCcchhhhhccCceeeccCCc-cCCCCchhh-cCCCCccEEEccccccccc--cCccccCCCcc
Q 046000          184 FLHHLDVSSNNFTG-KLPQDKGIILQKLLYIDMANNR-FEGNLPSSI-GDMKTLTFLHLSKNNFSGE--LSTLFTGCVSL  258 (470)
Q Consensus       184 ~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l-~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L  258 (470)
                      .|+.+..+++...+ ..-...+....+|+.+-+.+|+ +++.-...+ .+++.|+.+++.++.....  ....-..++.|
T Consensus       295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l  374 (483)
T KOG4341|consen  295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL  374 (483)
T ss_pred             HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence            56666666654322 1222233445666777666665 221111111 3556677777666643311  12222346677


Q ss_pred             cEEecCCCcC-CCcchhhh----cCcccccEEEccccccc-cccchhhcCCCCccEEECCCCc
Q 046000          259 WFLDRSHNNF-HDQIFPKY----MNLTRLWFLYLDNNKFS-GKIEDGLLKSNQLKELDMSNNM  315 (470)
Q Consensus       259 ~~L~l~~~~~-~~~~~~~~----~~~~~L~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~  315 (470)
                      +.+.++.|.. ++.....+    .....+..+.++++... +.....+..+++|+.+++.++.
T Consensus       375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            7777776543 22211111    23456666777766433 3334455666777777777765

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.66  E-value=4.2e-09  Score=99.77  Aligned_cols=127  Identities=30%  Similarity=0.326  Sum_probs=64.7

Q ss_pred             ccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccCccCcCccChhhhccccccceec
Q 046000           31 QESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLR  110 (470)
Q Consensus        31 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  110 (470)
                      ..+..+++..+.+.. +-..++.+++|+.|++.+|.|+. +...+..+++|++|++++|.|+...+   +..++.|+.|+
T Consensus        72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~L~  146 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG---LSTLTLLKELN  146 (414)
T ss_pred             HhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc---hhhccchhhhe
Confidence            444455555555552 22335556666666666666652 22225556666666666666653322   44444466666


Q ss_pred             ccCCCCccccccccCCCCcccccCcccEEEccCccccCccch-HhhhcCCCCcEEEccccccC
Q 046000          111 LSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPA-WILQNNTKLEVLCLTNNSFT  172 (470)
Q Consensus       111 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~~~~~~~~L~~L~l~~~~i~  172 (470)
                      +.+|.+..+.        .+..++.|+.+++++|++. .+.. . ...+.+++.+++.++.+.
T Consensus       147 l~~N~i~~~~--------~~~~l~~L~~l~l~~n~i~-~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  147 LSGNLISDIS--------GLESLKSLKLLDLSYNRIV-DIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             eccCcchhcc--------CCccchhhhcccCCcchhh-hhhhhh-hhhccchHHHhccCCchh
Confidence            6665544221        2222455666666666555 2222 1 234555555555555544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.58  E-value=1.6e-08  Score=99.94  Aligned_cols=154  Identities=23%  Similarity=0.257  Sum_probs=94.6

Q ss_pred             CcCceeeccCCCCCCccc-------cccccccccccccCCCC-chHhhhcCCCCcEEEccCCccccccchhhhcCcCCcE
Q 046000           12 KNLEALDLSFNNINGTVE-------SQESFELNLAKNNIGGH-LLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEY   83 (470)
Q Consensus        12 ~~L~~L~ls~~~~~~~~~-------~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~   83 (470)
                      .+|+.||+++...-...-       +|+|++|.+.+-.+... .-....++|+|..||+|++.+++.  ..++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            467777777653321111       77777777777665432 233445677777777777777644  66777777777


Q ss_pred             EeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcE
Q 046000           84 LDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEV  163 (470)
Q Consensus        84 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~  163 (470)
                      |.+.+-.+........+.++++|+.|+++.................-..+|+|+.||.+++.+.+.+.+.+....++|+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            77777776644444567777777777777654443332222223333445677777777777666666666555566665


Q ss_pred             EEcc
Q 046000          164 LCLT  167 (470)
Q Consensus       164 L~l~  167 (470)
                      +..-
T Consensus       280 i~~~  283 (699)
T KOG3665|consen  280 IAAL  283 (699)
T ss_pred             hhhh
Confidence            5543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.55  E-value=2.1e-08  Score=83.78  Aligned_cols=230  Identities=19%  Similarity=0.179  Sum_probs=140.4

Q ss_pred             ccCceeeccCCccCCCC----chhhcCCCCccEEEccccccc---c-------ccCccccCCCcccEEecCCCcCCCcch
Q 046000          208 QKLLYIDMANNRFEGNL----PSSIGDMKTLTFLHLSKNNFS---G-------ELSTLFTGCVSLWFLDRSHNNFHDQIF  273 (470)
Q Consensus       208 ~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~---~-------~~~~~~~~l~~L~~L~l~~~~~~~~~~  273 (470)
                      ..++.+++++|.|...-    ...+.+-.+|+..+++.-...   +       ....++.+||.|+..++++|-+....+
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            34555555555554221    122334455666555543211   1       122345678888888888887766544


Q ss_pred             hh----hcCcccccEEEccccccccccchhh-------------cCCCCccEEECCCCcccCCcchhH-Hh---hhcccc
Q 046000          274 PK----YMNLTRLWFLYLDNNKFSGKIEDGL-------------LKSNQLKELDMSNNMLSGHIPHWI-AN---FSSYLE  332 (470)
Q Consensus       274 ~~----~~~~~~L~~l~l~~~~~~~~~~~~~-------------~~~~~L~~L~l~~~~~~~~~~~~~-~~---~~~~l~  332 (470)
                      +.    ++....|.+|.+++|.+.......+             ..-|.|+.+....|++. ..+... +.   .-..++
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk  188 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENLK  188 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCce
Confidence            43    4566888899998887763332222             23478999999999886 444322 21   123477


Q ss_pred             EEEcCCCcccCC-----CchhhhccCCCeEEEccCccccCcccccc-----ccCcccEEEccCCcccccCccchh-----
Q 046000          333 VLLMSKNFLKGN-----IPMQLLNHGSLQLLSVSENCLSGFMTSSF-----SLSSLVHLYVQRNDLSGTIPNALF-----  397 (470)
Q Consensus       333 ~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-----~~~~L~~L~l~~~~l~~~~~~~l~-----  397 (470)
                      .+.+..|.+...     +...+..+.+|+.||+++|.++..++.+.     ..+.|++|.+..|-++......+.     
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e  268 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE  268 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence            888888877622     11234568899999999998877665554     456688999988887654433221     


Q ss_pred             -cCCCccEEEcCCccceeecc-----hhh--hcCCCCcEEEccCcccCc
Q 046000          398 -RSSKLMTLDLRDNGFSGIIS-----DQI--NESSNLRVLLLRGNYLEG  438 (470)
Q Consensus       398 -~~~~L~~L~l~~n~l~~~~~-----~~~--~~~~~L~~L~l~~n~i~~  438 (470)
                       ..|+|..|-..+|.+.+.+.     ..+  ..+|-|..|.+.+|.++.
T Consensus       269 ~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         269 KFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             hcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence             24888888888887643211     111  356777778888888763

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.55  E-value=3e-09  Score=100.62  Aligned_cols=176  Identities=20%  Similarity=0.213  Sum_probs=80.9

Q ss_pred             ccccCCCcCceeeccCCCCCCccc----ccccccccccccc--CCCCchHhhhc------CCCCcEEEccCCccccccch
Q 046000            6 AGLHKLKNLEALDLSFNNINGTVE----SQESFELNLAKNN--IGGHLLDCLNN------MTRLKVLDTSFNQLSGSLPS   73 (470)
Q Consensus         6 ~~l~~~~~L~~L~ls~~~~~~~~~----~~~L~~L~l~~~~--~~~~~~~~~~~------~~~L~~L~l~~~~i~~~~~~   73 (470)
                      =.|..++.||+|.+.++.+.....    -..|++|..++.-  +...+....+.      .-.|.+.+.++|.+. ....
T Consensus       103 i~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD~  181 (1096)
T KOG1859|consen  103 ISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMDE  181 (1096)
T ss_pred             ceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHHH
Confidence            346778999999999998864322    1122222222110  00000000000      124555566666555 4455


Q ss_pred             hhhcCcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchH
Q 046000           74 VIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAW  153 (470)
Q Consensus        74 ~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~  153 (470)
                      ++.-++.|+.|+|++|++++.   ..+..|++|++|+|+.|.+..+..-.      ...+ +|..|.+++|.++ .+.. 
T Consensus       182 SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~------~~gc-~L~~L~lrnN~l~-tL~g-  249 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLS------MVGC-KLQLLNLRNNALT-TLRG-  249 (1096)
T ss_pred             HHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhccccccc------hhhh-hheeeeecccHHH-hhhh-
Confidence            555556666666666655422   24555666666666665544332111      0111 2455555555444 2222 


Q ss_pred             hhhcCCCCcEEEccccccCCcc-CCCCCCCCcccEEeccCCcc
Q 046000          154 ILQNNTKLEVLCLTNNSFTGNL-QLPHSKHDFLHHLDVSSNNF  195 (470)
Q Consensus       154 ~~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~~L~~L~l~~~~~  195 (470)
                       ++++.+|+.||+++|-+.+.. ..++..+..|+.|.+.+|.+
T Consensus       250 -ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  250 -IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             -HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence             234455555555554433211 12223334444555554443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.51  E-value=2.6e-09  Score=94.52  Aligned_cols=154  Identities=20%  Similarity=0.133  Sum_probs=75.9

Q ss_pred             CCCCccEEEcccccc-ccccCc-cccCCCcccEEecCCCc-CCCcchhhhc-CcccccEEEccccccc--cccchhhcCC
Q 046000          230 DMKTLTFLHLSKNNF-SGELST-LFTGCVSLWFLDRSHNN-FHDQIFPKYM-NLTRLWFLYLDNNKFS--GKIEDGLLKS  303 (470)
Q Consensus       230 ~l~~L~~L~l~~~~~-~~~~~~-~~~~l~~L~~L~l~~~~-~~~~~~~~~~-~~~~L~~l~l~~~~~~--~~~~~~~~~~  303 (470)
                      .+..|+.+..+++.. .+.... .-.++++|+++.+.+|+ +++..+..++ +++.|+.+++..+...  +.....-..+
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            445566666655432 221111 12345677777777664 3333333443 5677777777665432  2233334556


Q ss_pred             CCccEEECCCCcc-cCCcchhHHh---hhccccEEEcCCCccc-CCCchhhhccCCCeEEEccCcc-ccCcccccc--cc
Q 046000          304 NQLKELDMSNNML-SGHIPHWIAN---FSSYLEVLLMSKNFLK-GNIPMQLLNHGSLQLLSVSENC-LSGFMTSSF--SL  375 (470)
Q Consensus       304 ~~L~~L~l~~~~~-~~~~~~~~~~---~~~~l~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~--~~  375 (470)
                      +.|+.+.++.|.. +++....+..   ....++.+.++++... ...-+.+..|+.|+.+++-+++ ++..+...+  ++
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l  451 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHL  451 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhC
Confidence            7777777776643 2221112211   1122555566666533 2233445566677777666664 332222222  45


Q ss_pred             CcccEEEc
Q 046000          376 SSLVHLYV  383 (470)
Q Consensus       376 ~~L~~L~l  383 (470)
                      |+++...+
T Consensus       452 p~i~v~a~  459 (483)
T KOG4341|consen  452 PNIKVHAY  459 (483)
T ss_pred             ccceehhh
Confidence            66555433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.46  E-value=1.8e-07  Score=79.50  Aligned_cols=83  Identities=14%  Similarity=0.172  Sum_probs=48.9

Q ss_pred             CCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCC-CchhhcCCCCccEEEccccccccccC------ccccC
Q 046000          182 HDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGN-LPSSIGDMKTLTFLHLSKNNFSGELS------TLFTG  254 (470)
Q Consensus       182 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~------~~~~~  254 (470)
                      ++++..+.+..|.+.+.-.+..+..+|.+-.|.+..+++.+- ..+.+.+++.|..|.++++++.+...      -.++.
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR  277 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR  277 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence            455666666666555444444444455555666666666521 12346677888888888777654332      12456


Q ss_pred             CCcccEEecC
Q 046000          255 CVSLWFLDRS  264 (470)
Q Consensus       255 l~~L~~L~l~  264 (470)
                      +++++.|+-+
T Consensus       278 L~~v~vLNGs  287 (418)
T KOG2982|consen  278 LTKVQVLNGS  287 (418)
T ss_pred             ccceEEecCc
Confidence            7888887766

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.43  E-value=1.8e-08  Score=75.20  Aligned_cols=131  Identities=19%  Similarity=0.165  Sum_probs=77.6

Q ss_pred             ccEEEcCCCcccCCCchhh---hccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEE
Q 046000          331 LEVLLMSKNFLKGNIPMQL---LNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLD  406 (470)
Q Consensus       331 l~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~  406 (470)
                      +..++++.|++. .++...   ..-..|...++++|.+.+.+.... .++..+.|++.+|+++ .+|+.+..++.|+.|+
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence            445666677654 333333   333455666777777776665544 5667777777777777 4455577777777777


Q ss_pred             cCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccC
Q 046000          407 LRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIP  465 (470)
Q Consensus       407 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p  465 (470)
                      ++.|++. ..|..+..+.++-.|+..+|.+.....+ +-.-...-..++.+++..+..|
T Consensus       107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~d-l~~s~~~al~~lgnepl~~~~~  163 (177)
T KOG4579|consen  107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVD-LFYSSLPALIKLGNEPLGDETK  163 (177)
T ss_pred             cccCccc-cchHHHHHHHhHHHhcCCCCccccCcHH-HhccccHHHHHhcCCcccccCc
Confidence            7777776 4555565577777777777766632222 2222233333445555555444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.37  E-value=5.6e-07  Score=72.16  Aligned_cols=130  Identities=21%  Similarity=0.164  Sum_probs=96.2

Q ss_pred             cCceeeccCCCCCCccc----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccC
Q 046000           13 NLEALDLSFNNINGTVE----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSN   88 (470)
Q Consensus        13 ~L~~L~ls~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~   88 (470)
                      .=+.+||++.++.....    ..+.-.+|+++|.+...  ..|..+++|.+|.+.+|+|+.+.|.--..+++|..|.+.+
T Consensus        20 ~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   20 RERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             cccccccccccccchhhccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            35678888887754444    55667899999998853  3488899999999999999988888777889999999999


Q ss_pred             ccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCcccc
Q 046000           89 SYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLA  147 (470)
Q Consensus        89 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~  147 (470)
                      |.+........+..|++|+.|.+-+|......  .. -...+.+.++|+.||+++..-.
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~--~Y-R~yvl~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKK--NY-RLYVLYKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCchhccc--Cc-eeEEEEecCcceEeehhhhhHH
Confidence            99875555567888999999998887644211  11 1224566688888888776543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.28  E-value=8e-07  Score=53.62  Aligned_cols=36  Identities=31%  Similarity=0.455  Sum_probs=16.6

Q ss_pred             CCcEEEccCcccCcccchhhccCCCCCeEEccCcccc
Q 046000          425 NLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRIN  461 (470)
Q Consensus       425 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~  461 (470)
                      +|++|++++|+|++ ++..+.+|++|+.|++++|+|+
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            44555555555542 3333445555555555555544

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.17  E-value=3.5e-06  Score=67.71  Aligned_cols=106  Identities=21%  Similarity=0.232  Sum_probs=82.6

Q ss_pred             cCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceee-cchhhhcCCCCcEEE
Q 046000          352 HGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGI-ISDQINESSNLRVLL  430 (470)
Q Consensus       352 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~  430 (470)
                      ......+|+++|.+..++... .++.|.+|.+.+|+|+.+.|.--..+|+|++|.+.+|.+... ..+-+..||.|++|.
T Consensus        41 ~d~~d~iDLtdNdl~~l~~lp-~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKLDNLP-HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccccceecccccchhhcccCC-CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            346778999999887654322 678999999999999977777666779999999999987532 123467899999999


Q ss_pred             ccCcccCcc---cchhhccCCCCCeEEccCc
Q 046000          431 LRGNYLEGP---ISNQFCQLRRLGVMDLSHN  458 (470)
Q Consensus       431 l~~n~i~~~---~~~~~~~l~~L~~l~l~~n  458 (470)
                      +-+|+++..   =...+..+|+|++||+++-
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            999998742   2346788899999998764

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.09  E-value=3.6e-06  Score=50.74  Aligned_cols=38  Identities=26%  Similarity=0.415  Sum_probs=24.0

Q ss_pred             CCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc
Q 046000          400 SKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG  438 (470)
Q Consensus       400 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~  438 (470)
                      ++|++|++++|+++. ++..+.++++|++|++++|+|++
T Consensus         1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCC
Confidence            356777777777763 44456777777777777777663

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.08  E-value=4.3e-07  Score=68.01  Aligned_cols=83  Identities=19%  Similarity=0.177  Sum_probs=41.2

Q ss_pred             CccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEcc
Q 046000          305 QLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQ  384 (470)
Q Consensus       305 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~  384 (470)
                      .|...++++|.+. .+|..+...++.++.+++.+|+++ .+|+.+..++.|+.++++.|.+...+...+.+.++-.|+..
T Consensus        54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence            3444445555444 444444444333455555555554 44555555555555555555555544444444455555555


Q ss_pred             CCccc
Q 046000          385 RNDLS  389 (470)
Q Consensus       385 ~~~l~  389 (470)
                      +|.+.
T Consensus       132 ~na~~  136 (177)
T KOG4579|consen  132 ENARA  136 (177)
T ss_pred             CCccc
Confidence            55444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.95  E-value=3.9e-05  Score=70.27  Aligned_cols=139  Identities=19%  Similarity=0.219  Sum_probs=89.9

Q ss_pred             hhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCC-cccCCCchhhhccC
Q 046000          275 KYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKN-FLKGNIPMQLLNHG  353 (470)
Q Consensus       275 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~-~~~~~~~~~~~~~~  353 (470)
                      .+..+..+..|++++|.+... +   .-..+|++|.+++|.-...+|..+   +..|+.|.+.+| .+. .+|      +
T Consensus        47 r~~~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP------~  112 (426)
T PRK15386         47 QIEEARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLP------E  112 (426)
T ss_pred             HHHHhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-ccc------c
Confidence            345578899999999977733 3   234579999998876444556533   445899999988 443 333      4


Q ss_pred             CCeEEEccCccccCccccccccCcccEEEccCCc-ccc-cCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEc
Q 046000          354 SLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRND-LSG-TIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLL  431 (470)
Q Consensus       354 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~-l~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  431 (470)
                      +|+.|+++++....+...   .++|++|.+.++. ... ..+..  -.++|+.|++++|... ..|+.+  ..+|+.|++
T Consensus       113 sLe~L~L~~n~~~~L~~L---PssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~L--P~SLk~L~l  184 (426)
T PRK15386        113 SVRSLEIKGSATDSIKNV---PNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKL--PESLQSITL  184 (426)
T ss_pred             ccceEEeCCCCCcccccC---cchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCcccc--cccCcEEEe
Confidence            688888877665443321   3578888885433 111 11111  2278999999999866 344433  368999999


Q ss_pred             cCcc
Q 046000          432 RGNY  435 (470)
Q Consensus       432 ~~n~  435 (470)
                      +.+.
T Consensus       185 s~n~  188 (426)
T PRK15386        185 HIEQ  188 (426)
T ss_pred             cccc
Confidence            8774

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.91  E-value=7.1e-06  Score=81.51  Aligned_cols=186  Identities=20%  Similarity=0.176  Sum_probs=104.5

Q ss_pred             CCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccc-------------cchhh--cCCCCccEEECCCCcc-cC
Q 046000          255 CVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGK-------------IEDGL--LKSNQLKELDMSNNML-SG  318 (470)
Q Consensus       255 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-------------~~~~~--~~~~~L~~L~l~~~~~-~~  318 (470)
                      .-++...++.+............... |+.+.+++-.....             ....+  ....+|+.|++++... ..
T Consensus        59 ~f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~  137 (699)
T KOG3665|consen   59 KFNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSN  137 (699)
T ss_pred             hheeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhc
Confidence            34566667766655554444444444 77777665322100             00001  1124677777777542 23


Q ss_pred             CcchhHHhhhccccEEEcCCCcccCC-CchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccc-cCccch
Q 046000          319 HIPHWIANFSSYLEVLLMSKNFLKGN-IPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSG-TIPNAL  396 (470)
Q Consensus       319 ~~~~~~~~~~~~l~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~l  396 (470)
                      ..+..++...++|+.|.+.+-.+... ......++|+|..||+++..++.+ .+...+.+|++|.+.+-.+.. .....+
T Consensus       138 ~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~L  216 (699)
T KOG3665|consen  138 GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDL  216 (699)
T ss_pred             cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHH
Confidence            44455566666677777776554322 233345677777777777777765 333367777777777766653 122345


Q ss_pred             hcCCCccEEEcCCccceeec--c----hhhhcCCCCcEEEccCcccCcccch
Q 046000          397 FRSSKLMTLDLRDNGFSGII--S----DQINESSNLRVLLLRGNYLEGPISN  442 (470)
Q Consensus       397 ~~~~~L~~L~l~~n~l~~~~--~----~~~~~~~~L~~L~l~~n~i~~~~~~  442 (470)
                      .++++|+.||+|..+.....  .    +.-..+|+||.||.++..+.+...+
T Consensus       217 F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le  268 (699)
T KOG3665|consen  217 FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE  268 (699)
T ss_pred             hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence            66777777777766643221  1    1113367777777777776653333

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.82  E-value=7.5e-05  Score=68.46  Aligned_cols=140  Identities=12%  Similarity=0.047  Sum_probs=88.4

Q ss_pred             ccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccc
Q 046000          252 FTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYL  331 (470)
Q Consensus       252 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l  331 (470)
                      +..+.+++.|++++|.+....  .  -.++|+.|.++++.--...+..+  .++|+.|.+++|.....+       +..+
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP--~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-------P~sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLP--V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-------PESV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccC--C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-------cccc
Confidence            445688999999999776543  2  23579999998864433444433  468999999998432233       3447


Q ss_pred             cEEEcCCCcccCCCchhhhccCCCeEEEccCcc-ccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCc
Q 046000          332 EVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENC-LSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDN  410 (470)
Q Consensus       332 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n  410 (470)
                      +.|++..+... .++. +  .++|+.|.+.++. .........-.++|++|++.+|... ..|+.+.  .+|+.|+++.+
T Consensus       115 e~L~L~~n~~~-~L~~-L--PssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        115 RSLEIKGSATD-SIKN-V--PNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             ceEEeCCCCCc-cccc-C--cchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            88888765543 1111 1  3467788775432 1111111112378999999999876 4455444  78999999877


Q ss_pred             c
Q 046000          411 G  411 (470)
Q Consensus       411 ~  411 (470)
                      .
T Consensus       188 ~  188 (426)
T PRK15386        188 Q  188 (426)
T ss_pred             c
Confidence            4

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.73  E-value=0.00012  Score=57.09  Aligned_cols=114  Identities=21%  Similarity=0.260  Sum_probs=39.0

Q ss_pred             ccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCC
Q 046000          331 LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRD  409 (470)
Q Consensus       331 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~  409 (470)
                      ++.+.+.. .+.......|..++.++.+.+.++ +..++...+ .+++++.+.+.+ .+.......+..+++|+.+++..
T Consensus        14 l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~   90 (129)
T PF13306_consen   14 LESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS   90 (129)
T ss_dssp             --EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred             CCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCc
Confidence            44454442 222222334445555555555443 444444444 333555555543 22223334444455555555544


Q ss_pred             ccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCC
Q 046000          410 NGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRL  450 (470)
Q Consensus       410 n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L  450 (470)
                      + +.......+.++ +++.+.+.. .+.......|.++++|
T Consensus        91 ~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   91 N-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             T--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             c-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            3 333334444444 555555544 3333334445444444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.73  E-value=0.00011  Score=57.17  Aligned_cols=117  Identities=16%  Similarity=0.257  Sum_probs=61.5

Q ss_pred             hhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCC
Q 046000          347 MQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSN  425 (470)
Q Consensus       347 ~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  425 (470)
                      ..|..+..|+.+.+.. .+..++...+ .+++|+.+.+.++ +......++..+++++.+.+.+ .+.......+..+++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            3466677788888764 5666666666 4567888888764 5545556677777788888866 444344556777788


Q ss_pred             CcEEEccCcccCcccchhhccCCCCCeEEccCcccccccCCCcc
Q 046000          426 LRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFT  469 (470)
Q Consensus       426 L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~  469 (470)
                      ++.+++..+ +.......+.++ .++.+.+.+ .++..-..+|.
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~  123 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFK  123 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccc
Confidence            888888665 554556667776 777777765 44434444443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.64  E-value=1.5e-05  Score=78.00  Aligned_cols=112  Identities=22%  Similarity=0.096  Sum_probs=48.8

Q ss_pred             cccccccccccccCCCC--chHhhhcCCCCcEEEccCC-ccccc----cchhhhcCcCCcEEeccCcc-CcCccChhhhc
Q 046000           30 SQESFELNLAKNNIGGH--LLDCLNNMTRLKVLDTSFN-QLSGS----LPSVIVNLASVEYLDLSNSY-FEGTFPISSLA  101 (470)
Q Consensus        30 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~-~i~~~----~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~l~  101 (470)
                      ++.|++|.+..+.....  .-.....+++|+.|+++++ .....    .......+++|+.|+++.+. +++........
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45555565555533222  2233445566666666552 11101    11123345556666666655 33222222222


Q ss_pred             cccccceecccCCCCccccccccCCCCcccccCcccEEEccCcc
Q 046000          102 NHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNN  145 (470)
Q Consensus       102 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  145 (470)
                      .|++|+.|.+..|..    ....++......++.|++|+++++.
T Consensus       267 ~c~~L~~L~l~~c~~----lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSN----LTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hCCCcceEccCCCCc----cchhHHHHHHHhcCcccEEeeecCc
Confidence            355555555444421    1122222333344455555555553

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.56  E-value=4.8e-06  Score=70.32  Aligned_cols=82  Identities=21%  Similarity=0.199  Sum_probs=57.4

Q ss_pred             ccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccCccCcCccChhhhccccccceec
Q 046000           31 QESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLR  110 (470)
Q Consensus        31 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  110 (470)
                      .+.++|++.+|.+..+  .-..+|+.|++|.|+-|+|+..  +.+..|++|++|+|+.|.|.+.-...-+.++++|+.|.
T Consensus        19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            3455677777777642  2245788888888888888644  44778888888888888876554455677778888888


Q ss_pred             ccCCCC
Q 046000          111 LSSRNN  116 (470)
Q Consensus       111 l~~~~~  116 (470)
                      |..|..
T Consensus        95 L~ENPC  100 (388)
T KOG2123|consen   95 LDENPC  100 (388)
T ss_pred             hccCCc
Confidence            877643

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.50  E-value=3.4e-06  Score=71.22  Aligned_cols=99  Identities=24%  Similarity=0.126  Sum_probs=80.4

Q ss_pred             CCCcCceeeccCCCCCCccc---cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccc-cchhhhcCcCCcEEe
Q 046000           10 KLKNLEALDLSFNNINGTVE---SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGS-LPSVIVNLASVEYLD   85 (470)
Q Consensus        10 ~~~~L~~L~ls~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~l~~L~~L~   85 (470)
                      .+.+.+.|++++|.++++..   ++.|+.|.|+-|.|++.  ..+..|++|++|.|..|.|.+. .-..+.++++|+.|.
T Consensus        17 dl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            35677889999999987766   88899999999999974  4499999999999999999743 223567899999999


Q ss_pred             ccCccCcCccCh----hhhccccccceec
Q 046000           86 LSNSYFEGTFPI----SSLANHSKLKVLR  110 (470)
Q Consensus        86 l~~~~~~~~~~~----~~l~~~~~L~~L~  110 (470)
                      |..|+..+..+.    ..++.+++|++|+
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            999988766553    4677788888875

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.40  E-value=0.00014  Score=61.37  Aligned_cols=110  Identities=24%  Similarity=0.212  Sum_probs=57.3

Q ss_pred             cccccccccccccCCCCchHhhhcCCCCcEEEccCC--ccccccchhhhcCcCCcEEeccCccCcCccChhhhccccccc
Q 046000           30 SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFN--QLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLK  107 (470)
Q Consensus        30 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  107 (470)
                      ...|+.|++.++.+++.  ..|-.+++||.|.++.|  ++...++-....+++|++|++++|++...-....+..+++|.
T Consensus        42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            55555666666555531  22444566666666666  555444444555566666666666665333334455556666


Q ss_pred             eecccCCCCccccccccCCCCcccccCcccEEEccCc
Q 046000          108 VLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHN  144 (470)
Q Consensus       108 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  144 (470)
                      +|++..|.......   ---..+..+++|++++-.+.
T Consensus       120 ~Ldl~n~~~~~l~d---yre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  120 SLDLFNCSVTNLDD---YREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhhcccCCcccccc---HHHHHHHHhhhhcccccccc
Confidence            66666654332110   00122444566666654444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.39  E-value=8.4e-05  Score=62.65  Aligned_cols=114  Identities=22%  Similarity=0.185  Sum_probs=74.4

Q ss_pred             CchhhhccCCCeEEEccCccccCccccccccCcccEEEccCC--cccccCccchhcCCCccEEEcCCccceee-cchhhh
Q 046000          345 IPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRN--DLSGTIPNALFRSSKLMTLDLRDNGFSGI-ISDQIN  421 (470)
Q Consensus       345 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~--~l~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~  421 (470)
                      +.........|+.+.+.+..++...... .+|+|++|.++.|  ++.....-....+|+|+++++++|++... ...-+.
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~~~~P-~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~  113 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTLTNFP-KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK  113 (260)
T ss_pred             cccccccccchhhhhhhccceeecccCC-CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh
Confidence            3344445566777777776665433221 5789999999999  55544444445669999999999998631 112245


Q ss_pred             cCCCCcEEEccCcccCccc---chhhccCCCCCeEEccCcc
Q 046000          422 ESSNLRVLLLRGNYLEGPI---SNQFCQLRRLGVMDLSHNR  459 (470)
Q Consensus       422 ~~~~L~~L~l~~n~i~~~~---~~~~~~l~~L~~l~l~~n~  459 (470)
                      .+++|..|++.+|..++.-   -..|.-+++|+.++-....
T Consensus       114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             hhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence            6778889999999776411   2356667888888765554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.25  E-value=7.6e-05  Score=72.98  Aligned_cols=110  Identities=21%  Similarity=0.088  Sum_probs=62.5

Q ss_pred             hccCceeeccCCccCCC--CchhhcCCCCccEEEcccc-cc-ccc---cCccccCCCcccEEecCCCc-CCCcchhhhcC
Q 046000          207 LQKLLYIDMANNRFEGN--LPSSIGDMKTLTFLHLSKN-NF-SGE---LSTLFTGCVSLWFLDRSHNN-FHDQIFPKYMN  278 (470)
Q Consensus       207 ~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~-~~-~~~---~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~  278 (470)
                      ++.|+.+.+.++.-...  .......++.|+.|+++++ .. ...   .......+++|+.++++.+. +++.....+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            56777777776643322  2234556777888887763 11 111   11233446777777777766 55555555543


Q ss_pred             -cccccEEEccccc-cccccc-hhhcCCCCccEEECCCCcc
Q 046000          279 -LTRLWFLYLDNNK-FSGKIE-DGLLKSNQLKELDMSNNML  316 (470)
Q Consensus       279 -~~~L~~l~l~~~~-~~~~~~-~~~~~~~~L~~L~l~~~~~  316 (470)
                       +++|+.+.+.++. +++... .....++.|++|++++|..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence             6777777766655 443322 2334566677777776654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.43  E-value=0.0007  Score=54.88  Aligned_cols=82  Identities=12%  Similarity=0.078  Sum_probs=38.8

Q ss_pred             CcccEEEccCCcccccCccchhcCCCccEEEcCCcccee-ecchhhh-cCCCCcEEEccCcc-cCcccchhhccCCCCCe
Q 046000          376 SSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSG-IISDQIN-ESSNLRVLLLRGNY-LEGPISNQFCQLRRLGV  452 (470)
Q Consensus       376 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~-~~~~~~~-~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~  452 (470)
                      ..++.++-+++.|..+..+.+..++.++.|.+.+|+--+ .-.+.++ -.++|++|++++|+ |++.....+..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            344455555555554444455555555555555554211 1111111 12455555555553 55555555555555555


Q ss_pred             EEccC
Q 046000          453 MDLSH  457 (470)
Q Consensus       453 l~l~~  457 (470)
                      |.+++
T Consensus       181 L~l~~  185 (221)
T KOG3864|consen  181 LHLYD  185 (221)
T ss_pred             HHhcC
Confidence            55544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.40  E-value=0.0015  Score=32.54  Aligned_cols=20  Identities=50%  Similarity=0.778  Sum_probs=13.2

Q ss_pred             CCCeEEccCcccccccCCCcc
Q 046000          449 RLGVMDLSHNRINGSIPSCFT  469 (470)
Q Consensus       449 ~L~~l~l~~n~~~~~~p~~~~  469 (470)
                      +|+.|++++|+++ .+|..|.
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTT
T ss_pred             CccEEECCCCcCE-eCChhhc
Confidence            3567777777777 6666654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.67  E-value=0.0062  Score=30.28  Aligned_cols=12  Identities=42%  Similarity=0.567  Sum_probs=5.8

Q ss_pred             ccEEEcCCccce
Q 046000          402 LMTLDLRDNGFS  413 (470)
Q Consensus       402 L~~L~l~~n~l~  413 (470)
                      |+.||+++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            444455555444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.67  E-value=0.0071  Score=27.83  Aligned_cols=13  Identities=46%  Similarity=0.769  Sum_probs=5.8

Q ss_pred             CCCeEEccCcccc
Q 046000          449 RLGVMDLSHNRIN  461 (470)
Q Consensus       449 ~L~~l~l~~n~~~  461 (470)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4556666666654

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.94  E-value=0.0003  Score=67.08  Aligned_cols=182  Identities=23%  Similarity=0.160  Sum_probs=104.8

Q ss_pred             cccEEecCCCcCCCcchhh----hcCcccccEEEccccccccccchh----hcCC-CCccEEECCCCcccCCcchhHHhh
Q 046000          257 SLWFLDRSHNNFHDQIFPK----YMNLTRLWFLYLDNNKFSGKIEDG----LLKS-NQLKELDMSNNMLSGHIPHWIANF  327 (470)
Q Consensus       257 ~L~~L~l~~~~~~~~~~~~----~~~~~~L~~l~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~~~~~  327 (470)
                      .+..+.+.+|.+.+..+..    +...+.|..+++++|.+.+.....    +... ..++.|.+..|.++......+...
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            3677888888887754443    456788888888888877433222    2232 456777777777765544433332


Q ss_pred             ---hccccEEEcCCCcccC----CCchhhh----ccCCCeEEEccCccccCcccccc-----ccCc-ccEEEccCCcccc
Q 046000          328 ---SSYLEVLLMSKNFLKG----NIPMQLL----NHGSLQLLSVSENCLSGFMTSSF-----SLSS-LVHLYVQRNDLSG  390 (470)
Q Consensus       328 ---~~~l~~L~l~~~~~~~----~~~~~~~----~~~~L~~L~l~~~~l~~~~~~~~-----~~~~-L~~L~l~~~~l~~  390 (470)
                         ...++.+++..|.+..    .++..+.    ...++++|++++|.++.......     ..+. +.++++.+|++.+
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence               3346666777776531    1222222    35567777777777654332222     2333 5557777777654


Q ss_pred             cCc----cchhcC-CCccEEEcCCccceee----cchhhhcCCCCcEEEccCcccCc
Q 046000          391 TIP----NALFRS-SKLMTLDLRDNGFSGI----ISDQINESSNLRVLLLRGNYLEG  438 (470)
Q Consensus       391 ~~~----~~l~~~-~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~i~~  438 (470)
                      ...    ..+..+ +.+++++++.|.+...    ....+..++.++++.+++|++..
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            421    223333 5567777777776543    33445566677777777777654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.54  E-value=0.001  Score=63.56  Aligned_cols=182  Identities=24%  Similarity=0.154  Sum_probs=100.6

Q ss_pred             CceeeccCCCCCCccc---------cccccccccccccCCCCchHhhh----cC-CCCcEEEccCCccccc----cchhh
Q 046000           14 LEALDLSFNNINGTVE---------SQESFELNLAKNNIGGHLLDCLN----NM-TRLKVLDTSFNQLSGS----LPSVI   75 (470)
Q Consensus        14 L~~L~ls~~~~~~~~~---------~~~L~~L~l~~~~~~~~~~~~~~----~~-~~L~~L~l~~~~i~~~----~~~~~   75 (470)
                      +..|+|.+|.+.+...         ...|..|++++|.+.+.....+.    .. ..|++|++..|.+.+.    +.+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            6667777776654333         66677777777777644332222    22 3456666666666532    33445


Q ss_pred             hcCcCCcEEeccCccCcCccC---hhhhc----cccccceecccCCCCccccccccCCCCcccccCc-ccEEEccCcccc
Q 046000           76 VNLASVEYLDLSNSYFEGTFP---ISSLA----NHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHD-LKYLDLSHNNLA  147 (470)
Q Consensus        76 ~~l~~L~~L~l~~~~~~~~~~---~~~l~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~i~  147 (470)
                      .....++.++++.|.+.....   ...+.    ...+++.|.+.+|.+......  .....+...++ ++++++..|.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~--~l~~~l~~~~~~~~el~l~~n~l~  246 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA--LLDEVLASGESLLRELDLASNKLG  246 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH--HHHHHHhccchhhHHHHHHhcCcc
Confidence            556667777777776531100   11222    355677777777765522222  12222333344 666788877766


Q ss_pred             CccchHh---hhcC-CCCcEEEccccccCCccC----CCCCCCCcccEEeccCCcccC
Q 046000          148 GDFPAWI---LQNN-TKLEVLCLTNNSFTGNLQ----LPHSKHDFLHHLDVSSNNFTG  197 (470)
Q Consensus       148 ~~~~~~~---~~~~-~~L~~L~l~~~~i~~~~~----~~~~~~~~L~~L~l~~~~~~~  197 (470)
                      +......   +... ..++++++..|.++....    ..+..+++++++.+..+.+.+
T Consensus       247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            3322222   2223 456788888887764332    233455678888888887653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.99  E-value=0.0029  Score=52.56  Aligned_cols=84  Identities=19%  Similarity=0.135  Sum_probs=67.5

Q ss_pred             cccCCCcCceeeccCCCCCCccc----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCc
Q 046000            7 GLHKLKNLEALDLSFNNINGTVE----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVE   82 (470)
Q Consensus         7 ~l~~~~~L~~L~ls~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~   82 (470)
                      .+..++..++||++.|++-....    ++.+.+|+++.+.+. ..|+.+.....++.+++.+|..+ ..|.++.+.+.++
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence            46778889999999887654333    778888999988887 67888888888888888888776 7888888889999


Q ss_pred             EEeccCccCc
Q 046000           83 YLDLSNSYFE   92 (470)
Q Consensus        83 ~L~l~~~~~~   92 (470)
                      ++++..+.+.
T Consensus       115 ~~e~k~~~~~  124 (326)
T KOG0473|consen  115 KNEQKKTEFF  124 (326)
T ss_pred             hhhhccCcch
Confidence            8888888754

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=93.34  E-value=0.021  Score=29.09  Aligned_cols=14  Identities=36%  Similarity=0.420  Sum_probs=5.3

Q ss_pred             CCCcEEEccCcccC
Q 046000          424 SNLRVLLLRGNYLE  437 (470)
Q Consensus       424 ~~L~~L~l~~n~i~  437 (470)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34444444444444

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.16  E-value=0.014  Score=47.53  Aligned_cols=80  Identities=18%  Similarity=0.099  Sum_probs=34.9

Q ss_pred             ccEEEcCCCcccCCCchhhhccCCCeEEEccCccccC-cccccc--ccCcccEEEccCCc-ccccCccchhcCCCccEEE
Q 046000          331 LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSG-FMTSSF--SLSSLVHLYVQRND-LSGTIPNALFRSSKLMTLD  406 (470)
Q Consensus       331 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~--~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~  406 (470)
                      ++.++.+++.+...--+.+..++.++.|.+.+|.-.+ ......  ..++|+.|++++|. |++-....+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            4455555554443333444445555555555543211 110000  24555555555543 4433334444455555555


Q ss_pred             cCCc
Q 046000          407 LRDN  410 (470)
Q Consensus       407 l~~n  410 (470)
                      |.+-
T Consensus       183 l~~l  186 (221)
T KOG3864|consen  183 LYDL  186 (221)
T ss_pred             hcCc
Confidence            4443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=92.80  E-value=0.053  Score=27.54  Aligned_cols=19  Identities=37%  Similarity=0.375  Sum_probs=9.2

Q ss_pred             CCCcEEEccCCccccccch
Q 046000           55 TRLKVLDTSFNQLSGSLPS   73 (470)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~   73 (470)
                      ++|++|+|++|.|.+....
T Consensus         2 ~~L~~L~l~~n~i~~~g~~   20 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGAS   20 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHH
Confidence            4566666666665544333

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.41  E-value=0.094  Score=27.21  Aligned_cols=16  Identities=31%  Similarity=0.474  Sum_probs=10.2

Q ss_pred             CCCCeEEccCcccccc
Q 046000          448 RRLGVMDLSHNRINGS  463 (470)
Q Consensus       448 ~~L~~l~l~~n~~~~~  463 (470)
                      ++|+.|++++|+++..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4566777777776633

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.41  E-value=0.094  Score=27.21  Aligned_cols=16  Identities=31%  Similarity=0.474  Sum_probs=10.2

Q ss_pred             CCCCeEEccCcccccc
Q 046000          448 RRLGVMDLSHNRINGS  463 (470)
Q Consensus       448 ~~L~~l~l~~n~~~~~  463 (470)
                      ++|+.|++++|+++..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4566777777776633

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.44  E-value=0.25  Score=25.55  Aligned_cols=15  Identities=53%  Similarity=0.552  Sum_probs=8.6

Q ss_pred             CCCcEEEccCCcccc
Q 046000           55 TRLKVLDTSFNQLSG   69 (470)
Q Consensus        55 ~~L~~L~l~~~~i~~   69 (470)
                      ++|++|+|++|.++.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00369        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            455666666666653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.44  E-value=0.25  Score=25.55  Aligned_cols=15  Identities=53%  Similarity=0.552  Sum_probs=8.6

Q ss_pred             CCCcEEEccCCcccc
Q 046000           55 TRLKVLDTSFNQLSG   69 (470)
Q Consensus        55 ~~L~~L~l~~~~i~~   69 (470)
                      ++|++|+|++|.++.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00370        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            455666666666653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.67  E-value=0.012  Score=49.10  Aligned_cols=87  Identities=14%  Similarity=0.143  Sum_probs=54.3

Q ss_pred             hhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcE
Q 046000          349 LLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRV  428 (470)
Q Consensus       349 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  428 (470)
                      +....+.+.||++.|++........-++.+..++++.|.+. ..|+.+.....+..+++.+|..+ -.|.++...++++.
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK  115 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence            44556666677777666555544434566666666666665 55565666666666666666665 35556666677777


Q ss_pred             EEccCcccC
Q 046000          429 LLLRGNYLE  437 (470)
Q Consensus       429 L~l~~n~i~  437 (470)
                      +++.++++.
T Consensus       116 ~e~k~~~~~  124 (326)
T KOG0473|consen  116 NEQKKTEFF  124 (326)
T ss_pred             hhhccCcch
Confidence            777666654

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=87.24  E-value=0.41  Score=24.72  Aligned_cols=18  Identities=28%  Similarity=0.584  Sum_probs=13.2

Q ss_pred             CCCCeEEccCcccccccCC
Q 046000          448 RRLGVMDLSHNRINGSIPS  466 (470)
Q Consensus       448 ~~L~~l~l~~n~~~~~~p~  466 (470)
                      ++|+.|++++|+++ .+|+
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            45777788888877 7775

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=85.60  E-value=0.34  Score=25.66  Aligned_cols=18  Identities=33%  Similarity=0.250  Sum_probs=10.8

Q ss_pred             CCCcEEEccCcccCcccc
Q 046000          424 SNLRVLLLRGNYLEGPIS  441 (470)
Q Consensus       424 ~~L~~L~l~~n~i~~~~~  441 (470)
                      ++|++|+|++|.+.....
T Consensus         2 ~~L~~LdL~~N~i~~~G~   19 (28)
T smart00368        2 PSLRELDLSNNKLGDEGA   19 (28)
T ss_pred             CccCEEECCCCCCCHHHH
Confidence            456666776666654333

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=83.62  E-value=4.7  Score=38.01  Aligned_cols=107  Identities=23%  Similarity=0.272  Sum_probs=48.1

Q ss_pred             CcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCC---CCCCcccEEeccCCcccCCCCcchhhhh--c
Q 046000          134 HDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPH---SKHDFLHHLDVSSNNFTGKLPQDKGIIL--Q  208 (470)
Q Consensus       134 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~  208 (470)
                      +.+++++++.+.+.++.+..+.+.-   --+.++.|..++.....+   ..-..+++++++.+...+.+|.......  .
T Consensus       165 pr~r~~dls~npi~dkvpihl~~p~---~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~  241 (553)
T KOG4242|consen  165 PRARQHDLSPNPIGDKVPIHLPQPG---NPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL  241 (553)
T ss_pred             chhhhhccCCCcccccCCccccCCC---CccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence            4456777777766655554332211   113444444332111110   1122466777777766655554433221  1


Q ss_pred             cCceeeccCCccC---CCCchhhcCCCCccEEEccccc
Q 046000          209 KLLYIDMANNRFE---GNLPSSIGDMKTLTFLHLSKNN  243 (470)
Q Consensus       209 ~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~  243 (470)
                      -+++++.+...+.   ...+..++.-..+++.+++.|.
T Consensus       242 vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng  279 (553)
T KOG4242|consen  242 VLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNG  279 (553)
T ss_pred             hhhcccccccccchhhcccccccccccccchhhhccCC
Confidence            2455555554432   1112223334456666665554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	470
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-33
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-28
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-33
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-27
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-10
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-08
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		2e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		5e-04
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		7e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  139 bits (350), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 154/469 (32%), Positives = 214/469 (45%), Gaps = 65/469 (13%)
Query: 6   AGLHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFN 65
           +G  KL +LE LDLS N+I+G               N+ G +L   +    LK L  S N
Sbjct: 145 SGGLKLNSLEVLDLSANSISGA--------------NVVGWVLS--DGCGELKHLAISGN 188
Query: 66  QLSGSLP-SVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTE 124
           ++SG +  S  VNL   E+LD+S++ F    P   L + S L+ L +S    N L   + 
Sbjct: 189 KISGDVDVSRCVNL---EFLDVSSNNFSTGIPF--LGDCSALQHLDISG---NKL---SG 237
Query: 125 NFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLP---HSK 181
           +F        +LK L++S N   G  P   L++   L+ L L  N FTG  ++P      
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVGPIPPLPLKS---LQYLSLAENKFTG--EIPDFLSGA 292
Query: 182 HDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLP-SSIGDMKTLTFLHLS 240
            D L  LD+S N+F G +P   G           +NN F G LP  ++  M+ L  L LS
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLS 351
Query: 241 KNNFSGELSTLFTG-CVSLWFLDRSHNNFHDQIFPKYMNLTR--LWFLYLDNNKFSGKIE 297
            N FSGEL    T    SL  LD S NNF   I P      +  L  LYL NN F+GKI 
Sbjct: 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
Query: 298 DGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQL 357
             L   ++L  L +S N LSG IP  + + S  L  L +  N L+G IP +L+   +L+ 
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLE- 469
Query: 358 LSVSENCXXXXXXXXXXXXXXVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIIS 417
                                  L +  NDL+G IP+ L   + L  + L +N  +G I 
Sbjct: 470 ----------------------TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Query: 418 DQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPS 466
             I    NL +L L  N   G I  +    R L  +DL+ N  NG+IP+
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  122 bits (305), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 130/422 (30%), Positives = 200/422 (47%), Gaps = 63/422 (14%)
Query: 79  ASVEYLDLSNSYFEGTFP-ISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLK-HDL 136
           AS+  LDLS +   G    ++SL + S LK L +SS   N L    +    +  LK + L
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSS---NTLDFPGKV---SGGLKLNSL 153
Query: 137 KYLDLSHNNLAG-DFPAWILQNNT-KLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNN 194
           + LDLS N+++G +   W+L +   +L+ L ++ N  +G++ +  S+   L  LDVSSNN
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNN 211
Query: 195 FTGKLP--QDKGIILQKLLYIDMANNRFEGNLPSSIG----------------------D 230
           F+  +P   D       L ++D++ N+  G+   +I                        
Sbjct: 212 FSTGIPFLGD----CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP 267
Query: 231 MKTLTFLHLSKNNFSGELSTLFTG-CVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDN 289
           +K+L +L L++N F+GE+    +G C +L  LD S N+F+  + P + + + L  L L +
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 290 NKFSGKIE-DGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQ 348
           N FSG++  D LLK   LK LD+S N  SG +P  + N S+ L  L +S N   G I   
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 349 LLNHGSLQLLSVSENCXXXXXXXXXXXXXXVHLYVQRNDLSGTIPNALFRSSKLMTLDLR 408
           L  +    L                       LY+Q N  +G IP  L   S+L++L L 
Sbjct: 388 LCQNPKNTL---------------------QELYLQNNGFTGKIPPTLSNCSELVSLHLS 426
Query: 409 DNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCF 468
            N  SG I   +   S LR L L  N LEG I  +   ++ L  + L  N + G IPS  
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486
Query: 469 TN 470
           +N
Sbjct: 487 SN 488

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  138 bits (348), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 154/469 (32%), Positives = 214/469 (45%), Gaps = 65/469 (13%)
Query: 6   AGLHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFN 65
           +G  KL +LE LDLS N+I+G               N+ G +L   +    LK L  S N
Sbjct: 142 SGGLKLNSLEVLDLSANSISGA--------------NVVGWVLS--DGCGELKHLAISGN 185
Query: 66  QLSGSLP-SVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTE 124
           ++SG +  S  VNL   E+LD+S++ F    P   L + S L+ L +S    N L   + 
Sbjct: 186 KISGDVDVSRCVNL---EFLDVSSNNFSTGIPF--LGDCSALQHLDISG---NKL---SG 234
Query: 125 NFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLP---HSK 181
           +F        +LK L++S N   G  P   L++   L+ L L  N FTG  ++P      
Sbjct: 235 DFSRAISTCTELKLLNISSNQFVGPIPPLPLKS---LQYLSLAENKFTG--EIPDFLSGA 289
Query: 182 HDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLP-SSIGDMKTLTFLHLS 240
            D L  LD+S N+F G +P   G           +NN F G LP  ++  M+ L  L LS
Sbjct: 290 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLS 348
Query: 241 KNNFSGELSTLFTG-CVSLWFLDRSHNNFHDQIFPKYMNLTR--LWFLYLDNNKFSGKIE 297
            N FSGEL    T    SL  LD S NNF   I P      +  L  LYL NN F+GKI 
Sbjct: 349 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 408
Query: 298 DGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQL 357
             L   ++L  L +S N LSG IP  + + S  L  L +  N L+G IP +L+   +L+ 
Sbjct: 409 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLE- 466
Query: 358 LSVSENCXXXXXXXXXXXXXXVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIIS 417
                                  L +  NDL+G IP+ L   + L  + L +N  +G I 
Sbjct: 467 ----------------------TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Query: 418 DQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPS 466
             I    NL +L L  N   G I  +    R L  +DL+ N  NG+IP+
Sbjct: 505 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 553

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 130/422 (30%), Positives = 200/422 (47%), Gaps = 63/422 (14%)
Query: 79  ASVEYLDLSNSYFEGTFP-ISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLK-HDL 136
           AS+  LDLS +   G    ++SL + S LK L +SS   N L    +    +  LK + L
Sbjct: 97  ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSS---NTLDFPGK---VSGGLKLNSL 150
Query: 137 KYLDLSHNNLAG-DFPAWILQNNT-KLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNN 194
           + LDLS N+++G +   W+L +   +L+ L ++ N  +G++ +  S+   L  LDVSSNN
Sbjct: 151 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNN 208
Query: 195 FTGKLP--QDKGIILQKLLYIDMANNRFEGNLPSSIG----------------------D 230
           F+  +P   D       L ++D++ N+  G+   +I                        
Sbjct: 209 FSTGIPFLGD----CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP 264
Query: 231 MKTLTFLHLSKNNFSGELSTLFTG-CVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDN 289
           +K+L +L L++N F+GE+    +G C +L  LD S N+F+  + P + + + L  L L +
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 290 NKFSGKIE-DGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQ 348
           N FSG++  D LLK   LK LD+S N  SG +P  + N S+ L  L +S N   G I   
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 349 LLNHGSLQLLSVSENCXXXXXXXXXXXXXXVHLYVQRNDLSGTIPNALFRSSKLMTLDLR 408
           L  +    L                       LY+Q N  +G IP  L   S+L++L L 
Sbjct: 385 LCQNPKNTL---------------------QELYLQNNGFTGKIPPTLSNCSELVSLHLS 423
Query: 409 DNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCF 468
            N  SG I   +   S LR L L  N LEG I  +   ++ L  + L  N + G IPS  
Sbjct: 424 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 483
Query: 469 TN 470
           +N
Sbjct: 484 SN 485

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 129/302 (42%), Gaps = 26/302 (8%)
Query: 130 FQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLD 189
            Q+K DL     +   L+   P     N T L VLC T+           ++   +++LD
Sbjct: 12  LQIKKDLG----NPTTLSSWLPTTDCCNRTWLGVLCDTD-----------TQTYRVNNLD 56
Query: 190 VSSNNFTGKLPQDKGII---LQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSG 246
           +S  N     P    +        LYI   NN   G +P +I  +  L +L+++  N SG
Sbjct: 57  LSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-LVGPIPPAIAKLTQLHYLYITHTNVSG 115
Query: 247 ELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQL 306
            +    +   +L  LD S+N     + P   +L  L  +  D N+ SG I D     ++L
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175
Query: 307 -KELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCX 365
              + +S N L+G IP   AN +  L  + +S+N L+G+  +   +  + Q + +++N  
Sbjct: 176 FTSMTISRNRLTGKIPPTFANLN--LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Query: 366 XXXXXXXXXXXXXVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSN 425
                          L ++ N + GT+P  L +   L +L++  N   G    +I +  N
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG----EIPQGGN 289
Query: 426 LR 427
           L+
Sbjct: 290 LQ 291

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 380 HLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGP 439
           +LY+   ++SG IP+ L +   L+TLD   N  SG +   I+   NL  +   GN + G 
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 440 ISNQFCQLRRL-GVMDLSHNRINGSIPSCFTN 470
           I + +    +L   M +S NR+ G IP  F N
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 118/273 (43%), Gaps = 52/273 (19%)
Query: 8   LHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLN----NMTRLKVLDTS 63
           L KL+NL+ LDLS ++I  +                     DC N    N+  L+ L+ S
Sbjct: 345 LEKLENLQKLDLSHSDIEAS---------------------DCCNLQLKNLRHLQYLNLS 383
Query: 64  FNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKT 123
           +N+  G           +E LD++ ++     P S   N   L+VL LS   + +L    
Sbjct: 384 YNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLS---HCLLDTSN 440
Query: 124 ENFLPTFQLKHDLKYLDLSHNNLA-GDFPAW-ILQNNTKLEVLCLTN-NSFTGNLQLPHS 180
           ++ L   Q   DL++L+L  N+   G      +LQ    LE+L L++ N  + + Q  H 
Sbjct: 441 QHLLAGLQ---DLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHG 497
Query: 181 KHDFLHHLDVSSNNFTG----KLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTF 236
             + ++HLD+S N+ TG     L   KG      LY++MA+N      P  +  +   + 
Sbjct: 498 LRN-VNHLDLSHNSLTGDSMDALSHLKG------LYLNMASNNIRIIPPHLLPALSQQSI 550
Query: 237 LHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFH 269
           ++LS N        L   C ++ F+     N H
Sbjct: 551 INLSHN-------PLDCTCSNIHFITWYKENLH 576

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 113/265 (42%), Gaps = 60/265 (22%)
Query: 20  SFNNINGTVESQESFELNLAKNNIGGHLLDC---------LNNMTRLKVLDTSFNQLSGS 70
           SF+ ++ T+E  + F  N    ++   L++C         L ++ RL     +F    G 
Sbjct: 286 SFSLVSVTIERVKDFSYNFGWQHL--ELVNCKFGQFPTLKLKSLKRL-----TFTSNKGG 338
Query: 71  LPSVIVNLASVEYLDLSNS--YFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLP 128
                V+L S+E+LDLS +   F+G    S     S LK L LS    N +   + NFL 
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS-LKYLDLSF---NGVITMSSNFLG 394
Query: 129 TFQLKHDLKYLDLSHNNLA--GDFPAWI-LQNNTKLEVLCLTNNSFTGNLQLPHSKHDFL 185
             QL+H    LD  H+NL    +F  ++ L+N   L++               H+     
Sbjct: 395 LEQLEH----LDFQHSNLKQMSEFSVFLSLRNLIYLDI--------------SHT----- 431
Query: 186 HHLDVSSNN-FTGKLPQDKGIILQKLLYIDMANNRFEGN-LPSSIGDMKTLTFLHLSKNN 243
            H  V+ N  F G         L  L  + MA N F+ N LP    +++ LTFL LS+  
Sbjct: 432 -HTRVAFNGIFNG---------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481
Query: 244 FSGELSTLFTGCVSLWFLDRSHNNF 268
                 T F    SL  L+ SHNNF
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNF 506

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 113/265 (42%), Gaps = 60/265 (22%)
Query: 20  SFNNINGTVESQESFELNLAKNNIGGHLLDC---------LNNMTRLKVLDTSFNQLSGS 70
           SF+ ++ T+E  + F  N    ++   L++C         L ++ RL     +F    G 
Sbjct: 310 SFSLVSVTIERVKDFSYNFGWQHL--ELVNCKFGQFPTLKLKSLKRL-----TFTSNKGG 362
Query: 71  LPSVIVNLASVEYLDLSNS--YFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLP 128
                V+L S+E+LDLS +   F+G    S     S LK L LS    N +   + NFL 
Sbjct: 363 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTIS-LKYLDLSF---NGVITMSSNFLG 418
Query: 129 TFQLKHDLKYLDLSHNNLA--GDFPAWI-LQNNTKLEVLCLTNNSFTGNLQLPHSKHDFL 185
             QL+H    LD  H+NL    +F  ++ L+N   L++               H+     
Sbjct: 419 LEQLEH----LDFQHSNLKQMSEFSVFLSLRNLIYLDI--------------SHT----- 455
Query: 186 HHLDVSSNN-FTGKLPQDKGIILQKLLYIDMANNRFEGN-LPSSIGDMKTLTFLHLSKNN 243
            H  V+ N  F G         L  L  + MA N F+ N LP    +++ LTFL LS+  
Sbjct: 456 -HTRVAFNGIFNG---------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 505
Query: 244 FSGELSTLFTGCVSLWFLDRSHNNF 268
                 T F    SL  L+ SHNNF
Sbjct: 506 LEQLSPTAFNSLSSLQVLNMSHNNF 530

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	470
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-90
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-89
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-88
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-83
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-73
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-63
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-53
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-44
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-56
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-54
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-47
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-41
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-52
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-46
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-40
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-48
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-45
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-33
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-44
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-47
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-45
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-43
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-41
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-35
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-44
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-44
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-29
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-39
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-30
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-25
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  290 bits (745), Expect = 2e-90
 Identities = 134/490 (27%), Positives = 207/490 (42%), Gaps = 38/490 (7%)

Query: 10  KLKNLEALDLSFNNINGTVESQESF----ELNLAKNNIGGHLLDCLNNMTRLKVLDTSFN 65
           +  NLE LD+S NN +  +           L+++ N + G     ++  T LK+L+ S N
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257

Query: 66  QLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTEN 125
           Q  G +P +   L S++YL L+ + F G  P         L  L LS    N        
Sbjct: 258 QFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS---GNHF---YGA 309

Query: 126 FLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSK-HDF 184
             P F     L+ L LS NN +G+ P   L     L+VL L+ N F+G L    +     
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369

Query: 185 LHHLDVSSNNFTGKLPQDKG-IILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNN 243
           L  LD+SSNNF+G +  +        L  + + NN F G +P ++ +   L  LHLS N 
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429

Query: 244 FSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKS 303
            SG + +       L  L    N    +I  + M +  L  L LD N  +G+I  GL   
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489

Query: 304 NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSEN 363
             L  + +SNN L+G IP WI    + L +L +S N   GNIP +L +  SL  L ++ N
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLEN-LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548

Query: 364 CLSGFMTSSF-----------------------SLSSLVHLYVQRNDLSGTIPNALFRSS 400
             +G + ++                         +    H      +  G     L R S
Sbjct: 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608

Query: 401 KLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRI 460
                ++    + G  S   + + ++  L +  N L G I  +   +  L +++L HN I
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668

Query: 461 NGSIPSCFTN 470
           +GSIP    +
Sbjct: 669 SGSIPDEVGD 678

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  286 bits (735), Expect = 5e-89
 Identities = 137/472 (29%), Positives = 207/472 (43%), Gaps = 21/472 (4%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESF---ELNLAKNNIGGHLLDCL-NNMTRLKVLDTS 63
           +     L+ L++S N   G +          L+LA+N   G + D L      L  LD S
Sbjct: 243 ISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302

Query: 64  FNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKT 123
            N   G++P    + + +E L LS++ F G  P+ +L     LKVL LS    N    + 
Sbjct: 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS---FNEFSGEL 359

Query: 124 ENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNN-TKLEVLCLTNNSFTGNLQLPHSKH 182
              L    L   L  LDLS NN +G     + QN    L+ L L NN FTG +    S  
Sbjct: 360 PESL--TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417

Query: 183 DFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKN 242
             L  L +S N  +G +P   G  L KL  + +  N  EG +P  +  +KTL  L L  N
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476

Query: 243 NFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYM-NLTRLWFLYLDNNKFSGKIEDGLL 301
           + +GE+ +  + C +L ++  S+N    +I PK++  L  L  L L NN FSG I   L 
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEI-PKWIGRLENLAILKLSNNSFSGNIPAELG 535

Query: 302 KSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVS 361
               L  LD++ N+ +G IP  +   S       ++ NF+ G   + + N G  +    +
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQS-----GKIAANFIAGKRYVYIKNDGMKKECHGA 590

Query: 362 ENCLSGF---MTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISD 418
            N L            LS+     +      G        +  +M LD+  N  SG I  
Sbjct: 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650

Query: 419 QINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
           +I     L +L L  N + G I ++   LR L ++DLS N+++G IP   + 
Sbjct: 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  284 bits (728), Expect = 6e-88
 Identities = 140/471 (29%), Positives = 224/471 (47%), Gaps = 39/471 (8%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQL 67
           L  L  LE+L LS ++ING+V                            L  LD S N L
Sbjct: 73  LLSLTGLESLFLSNSHINGSVSG--------------------FKCSASLTSLDLSRNSL 112

Query: 68  SGSLPSV--IVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTEN 125
           SG + ++  + + + +++L++S++  +    +S     + L+VL LS    N +      
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS---ANSISGANVV 169

Query: 126 FLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPH-SKHDF 184
                    +LK+L +S N ++GD     +     LE L +++N+F+    +P       
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFST--GIPFLGDCSA 224

Query: 185 LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNF 244
           L HLD+S N  +G   +       +L  +++++N+F G +P     +K+L +L L++N F
Sbjct: 225 LQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKF 281

Query: 245 SGEL-STLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKI-EDGLLK 302
           +GE+   L   C +L  LD S N+F+  + P + + + L  L L +N FSG++  D LLK
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341

Query: 303 SNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHG--SLQLLSV 360
              LK LD+S N  SG +P  + N S+ L  L +S N   G I   L  +   +LQ L +
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401

Query: 361 SENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQ 419
             N  +G +  + S  S LV L++  N LSGTIP++L   SKL  L L  N   G I  +
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461

Query: 420 INESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
           +     L  L+L  N L G I +       L  + LS+NR+ G IP     
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  270 bits (692), Expect = 8e-83
 Identities = 126/448 (28%), Positives = 206/448 (45%), Gaps = 25/448 (5%)

Query: 35  ELNLAKNNI---GGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYF 91
            ++L+   +      +   L ++T L+ L  S + ++GS+       AS+  LDLS +  
Sbjct: 54  SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSL 112

Query: 92  EGTFP-ISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDF 150
            G    ++SL + S LK L +S   +N L    +  +      + L+ LDLS N+++G  
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVS---SNTLDFPGK--VSGGLKLNSLEVLDLSANSISGAN 167

Query: 151 PAWILQNN--TKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQ 208
               + ++   +L+ L ++ N  +G++ +    +  L  LDVSSNNF+  +P        
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN--LEFLDVSSNNFSTGIPFLGD--CS 223

Query: 209 KLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNF 268
            L ++D++ N+  G+   +I     L  L++S N F G +        SL +L  + N F
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKF 281

Query: 269 HDQIFPK-YMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIP-HWIAN 326
             +I          L  L L  N F G +       + L+ L +S+N  SG +P   +  
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341

Query: 327 FSSYLEVLLMSKNFLKGNIPMQLLN-HGSLQLLSVSENCLSGFMTSSF---SLSSLVHLY 382
               L+VL +S N   G +P  L N   SL  L +S N  SG +  +      ++L  LY
Sbjct: 342 MRG-LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400

Query: 383 VQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISN 442
           +Q N  +G IP  L   S+L++L L  N  SG I   +   S LR L L  N LEG I  
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460

Query: 443 QFCQLRRLGVMDLSHNRINGSIPSCFTN 470
           +   ++ L  + L  N + G IPS  +N
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSN 488

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  245 bits (627), Expect = 2e-73
 Identities = 127/425 (29%), Positives = 189/425 (44%), Gaps = 22/425 (5%)

Query: 55  TRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSR 114
           T + +     N    ++ S +++L  +E L LSNS+  G+         + L  L LS  
Sbjct: 53  TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS--GFKCSASLTSLDLS-- 108

Query: 115 NNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGN 174
             N L                LK+L++S N L              LEVL L+ NS +G 
Sbjct: 109 -RNSLSGPVTTLTSLGSCSG-LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 175 LQLPHSKHDFLH---HLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDM 231
             +     D      HL +S N  +G +   +      L ++D+++N F   +P  +GD 
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVDVSR---CVNLEFLDVSSNNFSTGIP-FLGDC 222

Query: 232 KTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNK 291
             L  L +S N  SG+ S   + C  L  L+ S N F   I P    L  L +L L  NK
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENK 280

Query: 292 FSGKIEDGLL-KSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLL 350
           F+G+I D L    + L  LD+S N   G +P +  + S  LE L +S N   G +PM  L
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL-LESLALSSNNFSGELPMDTL 339

Query: 351 -NHGSLQLLSVSENCLSGFMTSSFS--LSSLVHLYVQRNDLSGTIPNALFRSSK--LMTL 405
                L++L +S N  SG +  S +   +SL+ L +  N+ SG I   L ++ K  L  L
Sbjct: 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399

Query: 406 DLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIP 465
            L++NGF+G I   ++  S L  L L  NYL G I +    L +L  + L  N + G IP
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459

Query: 466 SCFTN 470
                
Sbjct: 460 QELMY 464

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  219 bits (559), Expect = 1e-63
 Identities = 106/401 (26%), Positives = 165/401 (41%), Gaps = 40/401 (9%)

Query: 102 NHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKL 161
              K+  + LSS+    L +       +      L+ L LS++++ G       + +  L
Sbjct: 48  RDDKVTSIDLSSKP---LNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASL 102

Query: 162 EVLCLTNNSFTGNLQLPHS--KHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNR 219
             L L+ NS +G +    S      L  L+VSSN          G+ L  L  +D++ N 
Sbjct: 103 TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162

Query: 220 FEGNLPSSI---GDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKY 276
             G              L  L +S N  SG++    + CV+L FLD S NNF   I P  
Sbjct: 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGI-PFL 219

Query: 277 MNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIP--------------- 321
            + + L  L +  NK SG     +    +LK L++S+N   G IP               
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAEN 279

Query: 322 -------HWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSS-- 372
                   +++     L  L +S N   G +P    +   L+ L++S N  SG +     
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 339

Query: 373 FSLSSLVHLYVQRNDLSGTIPNALFR-SSKLMTLDLRDNGFSGIISDQI--NESSNLRVL 429
             +  L  L +  N+ SG +P +L   S+ L+TLDL  N FSG I   +  N  + L+ L
Sbjct: 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399

Query: 430 LLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
            L+ N   G I         L  + LS N ++G+IPS   +
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  189 bits (483), Expect = 4e-53
 Identities = 90/370 (24%), Positives = 144/370 (38%), Gaps = 49/370 (13%)

Query: 7   GLHKLKNLEALDLSFNNINGTVESQES-----FELNLAKNNIGGHLLDCLNNMTRLKVLD 61
             +    L+ L L  N   G +    S       L+L+ N + G +   L ++++L+ L 
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448

Query: 62  TSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQL 121
              N L G +P  ++ + ++E L L  +   G  P S L+N + L               
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP-SGLSNCTNLNW------------- 494

Query: 122 KTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSK 181
                            + LS+N L G+ P WI      L +L L+NNSF+GN  +P   
Sbjct: 495 -----------------ISLSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGN--IPAEL 534

Query: 182 HDF--LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHL 239
            D   L  LD+++N F G +P              +A N   G     I +       H 
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMF-----KQSGKIAANFIAGKRYVYIKNDGMKKECHG 589

Query: 240 SKN--NFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIE 297
           + N   F G  S       +    + +   +     P + N   + FL +  N  SG I 
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649

Query: 298 DGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQL 357
             +     L  L++ +N +SG IP  + +    L +L +S N L G IP  +     L  
Sbjct: 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRG-LNILDLSSNKLDGRIPQAMSALTMLTE 708

Query: 358 LSVSENCLSG 367
           + +S N LSG
Sbjct: 709 IDLSNNNLSG 718

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  163 bits (416), Expect = 5e-44
 Identities = 78/315 (24%), Positives = 125/315 (39%), Gaps = 34/315 (10%)

Query: 8   LHKLKNLEALDLSFNNINGTV-----ESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDT 62
           L     L +L LSFN ++GT+        +  +L L  N + G +   L  +  L+ L  
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473

Query: 63  SFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLK 122
            FN L+G +PS + N  ++ ++ LSN+   G  P   +     L +L+LS   NN     
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP-KWIGRLENLAILKLS---NNSF--- 526

Query: 123 TENFLPTFQLKHDLKYLDLSHNNLAGDFPAWI-------------------LQNNTKLEV 163
           + N          L +LDL+ N   G  PA +                   ++N+   + 
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 586

Query: 164 LCLTNN--SFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFE 221
                N   F G      ++    +  +++S  + G            ++++DM+ N   
Sbjct: 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN-NGSMMFLDMSYNMLS 645

Query: 222 GNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTR 281
           G +P  IG M  L  L+L  N+ SG +         L  LD S N    +I      LT 
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705

Query: 282 LWFLYLDNNKFSGKI 296
           L  + L NN  SG I
Sbjct: 706 LTEIDLSNNNLSGPI 720

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  198 bits (505), Expect = 1e-56
 Identities = 94/489 (19%), Positives = 178/489 (36%), Gaps = 39/489 (7%)

Query: 11  LKNLEALDLSFNNINGTVESQESF-------ELNLAKNNIGGHLLDCLNNMTRLKVLDTS 63
             N+  L+L+ N +        +F        L++  N I     +    +  LKVL+  
Sbjct: 24  PTNITVLNLTHNQLRRL--PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81

Query: 64  FNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKT 123
            N+LS           ++  L L ++  +     +       L  L LS   +N L   +
Sbjct: 82  HNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLS---HNGL---S 134

Query: 124 ENFLPTFQLKHDLKYLDLSHNNLAG-DFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKH 182
              L T     +L+ L LS+N +         +  N+ L+ L L++N             
Sbjct: 135 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 194

Query: 183 DFLHHLDVSSNNFTGKLPQD--KGIILQKLLYIDMANNRFEGNLPSSIGDMK--TLTFLH 238
             L  L +++      L +     +    +  + ++N++      ++   +K   LT L 
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254

Query: 239 LSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIED 298
           LS NN +   +  F     L +    +NN           L  + +L L  +     I  
Sbjct: 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314

Query: 299 GLLKS---------NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIP--- 346
             L             L+ L+M +N + G   +      + L+ L +S +F         
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN-LKYLSLSNSFTSLRTLTNE 373

Query: 347 -MQLLNHGSLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRS-SKLM 403
               L H  L +L++++N +S   + +FS L  L  L +  N++   +    +R    + 
Sbjct: 374 TFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF 433

Query: 404 TLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG--PISNQFCQLRRLGVMDLSHNRIN 461
            + L  N +  +  +      +L+ L+LR   L+      + F  LR L ++DLS+N I 
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493

Query: 462 GSIPSCFTN 470
                    
Sbjct: 494 NINDDMLEG 502

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  190 bits (485), Expect = 7e-54
 Identities = 104/496 (20%), Positives = 179/496 (36%), Gaps = 43/496 (8%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESF-------ELNLAKNNIGGHLLDCLNNM--TRLK 58
             K KNL  LDLS N ++ T     +        EL L+ N I     + L+    + LK
Sbjct: 117 FVKQKNLITLDLSHNGLSSTKLG--TQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174

Query: 59  VLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFP--ISSLANHSKLKVLRLSSRNN 116
            L+ S NQ+    P     +  +  L L+N     +    +     ++ ++ L LS   N
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS---N 231

Query: 117 NMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQ 176
           + L   +       +  + L  LDLS+NNL             +LE   L  N+      
Sbjct: 232 SQLSTTSNTTFLGLKWTN-LTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFS 289

Query: 177 LPHSKHDFLHHLDVSSNNFTGKLPQDK--GII------LQKLLYIDMANNRFEGNLPSSI 228
                   + +L++  +     +       I       L+ L +++M +N   G   +  
Sbjct: 290 HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF 349

Query: 229 GDMKTLTFLHLSKNNFSGE--LSTLFTGCV--SLWFLDRSHNNFHDQIFPKYMNLTRLWF 284
             +  L +L LS +  S     +  F       L  L+ + N         +  L  L  
Sbjct: 350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409

Query: 285 LYLDNNKFSGKIEDGLLKS-NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKG 343
           L L  N+   ++     +    + E+ +S N       +  A   S L+ L++ +  LK 
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS-LQRLMLRRVALKN 468

Query: 344 --NIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLS--------GTI 392
             + P       +L +L +S N ++         L  L  L +Q N+L+        G  
Sbjct: 469 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 528

Query: 393 PNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGV 452
              L   S L  L+L  NGF  I  +   +   L+++ L  N L    ++ F     L  
Sbjct: 529 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588

Query: 453 MDLSHNRINGSIPSCF 468
           ++L  N I       F
Sbjct: 589 LNLQKNLITSVEKKVF 604

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  173 bits (441), Expect = 1e-47
 Identities = 89/479 (18%), Positives = 166/479 (34%), Gaps = 49/479 (10%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESF--------ELNLAKNNIGGHLLDCLNNM--TRL 57
            H +  L  L L+   +  ++  +            L+L+ + +          +  T L
Sbjct: 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250

Query: 58  KVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNN 117
            +LD S+N L+         L  +EY  L  +  +  F   SL     ++ L L    + 
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRYLNLK--RSF 307

Query: 118 MLQLKTENFLP-----TFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFT 172
             Q  +   LP     +FQ    L++L++  N++ G   + +      L+ L L+N+  +
Sbjct: 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTS 366

Query: 173 G----NLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLP-SS 227
                N       H  LH L+++ N  +          L  L  +D+  N     L    
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW-LGHLEVLDLGLNEIGQELTGQE 425

Query: 228 IGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFH--DQIFPKYMNLTRLWFL 285
              ++ +  ++LS N +       F    SL  L          D     +  L  L  L
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485

Query: 286 YLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNI 345
            L NN  +   +D L    +L+ LD+ +N L+                  + K+   G  
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLA-----------------RLWKHANPGGP 528

Query: 346 PMQLLNHGSLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRSSKLMT 404
              L     L +L++  N         F  L  L  + +  N+L+    +       L +
Sbjct: 529 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588

Query: 405 LDLRDNGFSGIISDQINES-SNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRING 462
           L+L+ N  + +       +  NL  L +R N  +    +       +  ++ +H  I  
Sbjct: 589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES---IAWFVNWINETHTNIPE 644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  156 bits (396), Expect = 1e-41
 Identities = 80/352 (22%), Positives = 140/352 (39%), Gaps = 23/352 (6%)

Query: 136 LKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNF 195
            +  D SH  L    P  +  N   + VL LT+N          +++  L  LDV  N  
Sbjct: 6   HEVADCSHLKLT-QVPDDLPTN---ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 196 TGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGC 255
           +  L  +    L  L  +++ +N        +      LT LHL  N+     +  F   
Sbjct: 62  SK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 256 VSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIED--GLLKSNQLKELDMSN 313
            +L  LD SHN          + L  L  L L NNK      +   +  ++ LK+L++S+
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 314 NMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQL---LNHGSLQLLSVSENCLSGFMT 370
           N +    P         L  L ++   L  ++  +L   L + S++ LS+S + LS    
Sbjct: 181 NQIKEFSPGCFHAIGR-LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

Query: 371 SSFS---LSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLR 427
           ++F     ++L  L +  N+L+    ++     +L    L  N    + S  ++   N+R
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR 299

Query: 428 VLLLRGNYLEGPISNQ---------FCQLRRLGVMDLSHNRINGSIPSCFTN 470
            L L+ ++ +  IS           F  L+ L  +++  N I G   + FT 
Sbjct: 300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  118 bits (297), Expect = 2e-28
 Identities = 67/331 (20%), Positives = 107/331 (32%), Gaps = 24/331 (7%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESF-----ELNLAKNNIGGHLLDCLN----NMTRLK 58
              LK LE L++  N+I G   +  +       L+L+ +      L          + L 
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384

Query: 59  VLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNM 118
           +L+ + N++S         L  +E LDL  +                +  + LS    N 
Sbjct: 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS---YNK 441

Query: 119 LQLKTENFLPTFQLKHDLKYLDLSHNNLAG-DFPAWILQNNTKLEVLCLTNNSFTGNLQL 177
               T N          L+ L L    L   D      Q    L +L L+NN+       
Sbjct: 442 YLQLTRNSFALVP---SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498

Query: 178 PHSKHDFLHHLDVSSNNFT-------GKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGD 230
                + L  LD+  NN            P      L  L  +++ +N F+        D
Sbjct: 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558

Query: 231 MKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYM-NLTRLWFLYLDN 289
           +  L  + L  NN +   +++F   VSL  L+   N         +      L  L +  
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618

Query: 290 NKFSGKIEDGLLKSNQLKELDMSNNMLSGHI 320
           N F    E      N + E   +   LS H 
Sbjct: 619 NPFDCTCESIAWFVNWINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 91.2 bits (227), Expect = 9e-20
 Identities = 38/169 (22%), Positives = 60/169 (35%), Gaps = 5/169 (2%)

Query: 303 SNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSE 362
           +   +  D S+  L+  +P    +  + + VL ++ N L+         +  L  L V  
Sbjct: 3   TVSHEVADCSHLKLT-QVPD---DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58

Query: 363 NCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQIN 421
           N +S         L  L  L +Q N+LS          + L  L L  N    I ++   
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118

Query: 422 ESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
           +  NL  L L  N L         QL  L  + LS+N+I          
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  186 bits (473), Expect = 1e-52
 Identities = 94/506 (18%), Positives = 155/506 (30%), Gaps = 56/506 (11%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESF-------ELNLAKNNIGGHLLDCLNNMTRLKVL 60
                 L+ LDLS   I    +   ++        L L  N I    L   + ++ L+ L
Sbjct: 48  FFSFPELQVLDLSRCEIQTIED--GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105

Query: 61  DTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQ 120
                 L+      I +L +++ L+++++  +        +N + L+ L LS  +N +  
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS--SNKIQS 163

Query: 121 LKTENFLPTFQLKHD-----------------------LKYLDLSHNNLAGDFPAWILQN 157
           +   +     Q+                          L  L L +N  + +     +Q 
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223

Query: 158 NTKLEVLCLTNNSFTGNLQLPHSKHDFL--------HHLDVSSNNFTGKLPQDKGIILQK 209
              LEV  L    F     L       L            ++  ++      D    L  
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283

Query: 210 LLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFH 269
           +    + +   E     S         L L    F    +        L F      N  
Sbjct: 284 VSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 341

Query: 270 DQIFPKYMNLTRLWFLYLDNNK--FSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANF 327
            ++     +L  L FL L  N   F G        +  LK LD+S N +   +       
Sbjct: 342 SEV-----DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGL 395

Query: 328 SSYLEVLLMSKNFLKGNIPMQLLNH-GSLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQR 385
              LE L    + LK      +     +L  L +S           F+ LSSL  L +  
Sbjct: 396 EQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 386 NDLSGTIPNALFRS-SKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQF 444
           N         +F     L  LDL       +     N  S+L+VL +  N      +  +
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514

Query: 445 CQLRRLGVMDLSHNRINGSIPSCFTN 470
             L  L V+D S N I  S      +
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQH 540

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  168 bits (427), Expect = 3e-46
 Identities = 94/433 (21%), Positives = 147/433 (33%), Gaps = 28/433 (6%)

Query: 2   LFLGAGLHKLKNLEALDLSFNNINGTVES---------QESFELNLAKNNIGGHLLDCLN 52
             L      L NLE LDLS N I     +           +  L+L+ N +         
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 53  NMTRLKVLDTSFNQLSGSLPS-VIVNLASVEYLDLSNSYFEGTFPISSLANHS--KLKVL 109
            + RL  L    N  S ++    I  LA +E   L    F     +      +   L  L
Sbjct: 199 EI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 110 RLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNN 169
            +       L    ++ +  F    ++    L    +           N   + L L N 
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNC 314

Query: 170 SFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNR--FEGNLPSS 227
            F    Q P  K   L  L  +SN       +     L  L ++D++ N   F+G    S
Sbjct: 315 KFG---QFPTLKLKSLKRLTFTSNKGGNAFSEVD---LPSLEFLDLSRNGLSFKGCCSQS 368

Query: 228 IGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKY-MNLTRLWFLY 286
                +L +L LS N     +S+ F G   L  LD  H+N          ++L  L +L 
Sbjct: 369 DFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 287 LDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIP 346
           + +              + L+ L M+ N    +    I      L  L +S+  L+   P
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487

Query: 347 MQLLNHGSLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRS-SKLMT 404
               +  SLQ+L++S N      T  +  L+SL  L    N +  +    L    S L  
Sbjct: 488 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 547

Query: 405 LDLRDNGFSGIIS 417
           L+L  N F+    
Sbjct: 548 LNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  151 bits (383), Expect = 4e-40
 Identities = 88/437 (20%), Positives = 144/437 (32%), Gaps = 36/437 (8%)

Query: 52  NNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRL 111
           N     K LD SFN L         +   ++ LDLS    +      +  + S L  L L
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLIL 83

Query: 112 SSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSF 171
           +   N +  L    F         L+ L     NLA       + +   L+ L + +N  
Sbjct: 84  T--GNPIQSLALGAFSGL----SSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLI 136

Query: 172 TGNLQLPHSKHDF--LHHLDVSSNNFTGKLPQDKGIILQ---KLLYIDMANNRFEGNLPS 226
               +LP    +   L HLD+SSN        D  ++ Q     L +D++ N      P 
Sbjct: 137 QS-FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195

Query: 227 SIGDMKTLTFLHLSKNNFSGEL-STLFTGCVSLWFLD------RSHNNFHDQIFPKYMNL 279
           +  +++ L  L L  N  S  +  T   G   L          R+  N           L
Sbjct: 196 AFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 280 TRLWFLYLD---NNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLM 336
             L          + +   I D       +    + +  +         +++   + L +
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF---SYNFGWQHLEL 311

Query: 337 SKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLS--GTIPN 394
                     ++L +   L   S         +     L SL  L + RN LS  G    
Sbjct: 312 VNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV----DLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 395 ALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQ-FCQLRRLGVM 453
           + F ++ L  LDL  NG   + S+ +     L  L  + + L+       F  LR L  +
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 454 DLSHNRINGSIPSCFTN 470
           D+SH     +    F  
Sbjct: 427 DISHTHTRVAFNGIFNG 443

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  112 bits (283), Expect = 7e-27
 Identities = 51/331 (15%), Positives = 102/331 (30%), Gaps = 23/331 (6%)

Query: 155 LQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYID 214
           ++    +   C+  N +    ++P +      +LD+S N               +L  +D
Sbjct: 4   VEVVPNITYQCMELNFY----KIPDNLPFSTKNLDLSFNPLRHLGSYSFFS-FPELQVLD 58

Query: 215 MANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFP 274
           ++    +     +   +  L+ L L+ N         F+G  SL  L     N       
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

Query: 275 KYMNLTRLWFLYLDNNKF-SGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSS---Y 330
              +L  L  L + +N   S K+ +       L+ LD+S+N +       +         
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 331 LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF--SLSSLVHLYVQRNDL 388
              L +S N +   I         L  L++  N  S  +  +    L+ L    +   + 
Sbjct: 179 NLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 389 SGT------IPNALFRSSKLMTLDLRDN---GFSGIISDQINESSNLRVLLLRGNYLEGP 439
                      +AL     L   + R      +   I D  N  +N+    L    +E  
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 440 ISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
               +        ++L + +          +
Sbjct: 298 KDFSY--NFGWQHLELVNCKFGQFPTLKLKS 326

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  174 bits (444), Expect = 1e-48
 Identities = 91/479 (18%), Positives = 163/479 (34%), Gaps = 31/479 (6%)

Query: 11  LKNLEALDLSFNNINGTVESQESF-------ELNLAKNNIGGHLLDCLNNMTRLKVLDTS 63
             + E L+ SFN +        +F        L+L +  I     D   +  RL  L  +
Sbjct: 32  PNSTECLEFSFNVL--PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89

Query: 64  FNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKT 123
            N L     + +    ++++L    +          L N   L+ L L   +N++  +K 
Sbjct: 90  ANPLIFMAETALSGPKALKHLFFIQTGISSIDF-IPLHNQKTLESLYLG--SNHISSIKL 146

Query: 124 ENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQN--NTKLEVLCLTNNSFTGNLQLPHSK 181
               PT +LK     LD  +N +        + +        L L  N   G ++     
Sbjct: 147 PKGFPTEKLKV----LDFQNNAIHY-LSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFD 200

Query: 182 HDFLHHLDVSSNNFTGKLPQD-KGIILQKLLYIDMANNRFEGNLPSSIGDMK--TLTFLH 238
                 L+         + +  K   +Q L      +   E   P+    +   ++  ++
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260

Query: 239 LSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIED 298
           L K+ F    S  F     L  LD +  +   ++    + L+ L  L L  NKF    + 
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQI 319

Query: 299 GLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLK--GNIPMQLLNHGSLQ 356
                  L  L +  N     +          L  L +S + ++      +QL N   LQ
Sbjct: 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379

Query: 357 LLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRS-SKLMTLDLRDNGFSG 414
            L++S N      T +F     L  L +    L      + F++   L  L+L  +    
Sbjct: 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439

Query: 415 IISDQINESSNLRVLLLRGNYLEGPI---SNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
                 +    L+ L L+GN+        +N    L RL ++ LS   ++      FT+
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  166 bits (422), Expect = 2e-45
 Identities = 84/469 (17%), Positives = 153/469 (32%), Gaps = 20/469 (4%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESF-----ELNLAKNNIGGHLLDCLNNMTRLKVLDT 62
           L   K L+ L      I+               L L  N+I    L       +LKVLD 
Sbjct: 101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDF 160

Query: 63  SFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLK 122
             N +       + +L     L L+ +  +         + +  + L      N ++  K
Sbjct: 161 QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220

Query: 123 TENFLPTFQLKHDLKYLDLSHNNLAG-DFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSK 181
                        L        +        +       +E + L  + F          
Sbjct: 221 GLKNSTIQS----LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC 276

Query: 182 HDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSK 241
              L  LD+++ + +       G  L  L  + ++ N+FE     S  +  +LT L +  
Sbjct: 277 FSGLQELDLTATHLSELPSGLVG--LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334

Query: 242 NNFSGELST-LFTGCVSLWFLDRSHNNFHDQIFPKYM--NLTRLWFLYLDNNKFSGKIED 298
           N    EL T       +L  LD SH++            NL+ L  L L  N+      +
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394

Query: 299 GLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLL 358
              +  QL+ LD++   L              L+VL +S + L  +         +LQ L
Sbjct: 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454

Query: 359 SVSENCLSGFMTSSFS----LSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSG 414
           ++  N          +    L  L  L +   DLS    +A      +  +DL  N  + 
Sbjct: 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514

Query: 415 IISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGS 463
              + ++    +  L L  N++   + +    L +   ++L  N ++ +
Sbjct: 515 SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  130 bits (330), Expect = 5e-33
 Identities = 73/400 (18%), Positives = 146/400 (36%), Gaps = 25/400 (6%)

Query: 2   LFLGAGLHKLKNLEALDLSFNNINGTVESQESF-------ELNLAKNNIGGHLLDCLNNM 54
           +F G     +++L        +      +            +NL K+       +  +  
Sbjct: 218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF 277

Query: 55  TRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSR 114
           + L+ LD +   LS  LPS +V L++++ L LS + FE      S +N   L  L +   
Sbjct: 278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSI-KG 334

Query: 115 NNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAG-DFPAWILQNNTKLEVLCLTNNSFTG 173
           N   L+L T       +   +L+ LDLSH+++   D     L+N + L+ L L+ N    
Sbjct: 335 NTKRLELGTG----CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390

Query: 174 NLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKT 233
                  +   L  LD++      K  Q     L  L  ++++++  + +       +  
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450

Query: 234 LTFLHLSKNNFSG---ELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNN 290
           L  L+L  N+F     + +        L  L  S  +        + +L  +  + L +N
Sbjct: 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510

Query: 291 KFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLL 350
           + +       L   +   L++++N +S  +P  +   S     + + +N L         
Sbjct: 511 RLTS-SSIEALSHLKGIYLNLASNHISIILPSLLPILSQ-QRTINLRQNPLDCTCSNIYF 568

Query: 351 NHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLS 389
               L+    +   L     +   +   L  + +    LS
Sbjct: 569 ----LEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.4 bits (204), Expect = 6e-17
 Identities = 34/165 (20%), Positives = 54/165 (32%), Gaps = 5/165 (3%)

Query: 307 KELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLS 366
           K  +  N  L+  IP       +  E L  S N L            +L  L ++   + 
Sbjct: 15  KTYNCENLGLN-EIP---GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70

Query: 367 GFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSN 425
                +F S   L  L +  N L      AL     L  L     G S I    ++    
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 426 LRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
           L  L L  N++      +     +L V+D  +N I+       ++
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  174 bits (443), Expect = 3e-48
 Identities = 68/444 (15%), Positives = 140/444 (31%), Gaps = 42/444 (9%)

Query: 51  LNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLR 110
           LN+  R+  L       SG +P  I  L  +E L L +   +    +      S      
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 111 LSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNS 170
              +     Q    ++ P      DL    ++ +           +   K   +   +N+
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFS-DLIKDCINSDPQQKSIKKSS-RITLKDTQIGQLSNN 194

Query: 171 FTGNLQLPHSKHDF--LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSI 228
            T    +  +      L    + ++ F  +       I +     +    +         
Sbjct: 195 ITF---VSKAVMRLTKLRQFYMGNSPFVAE------NICEAWENENSEYAQQYKTEDLKW 245

Query: 229 GDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHD--------QIFPKYMNLT 280
            ++K LT + +       +L T       +  ++ + N            Q         
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305

Query: 281 RLWFLYLDNNKF-SGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKN 339
           ++  +Y+  N   +  +E  L K  +L  L+   N L G +P    +    L  L ++ N
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIK-LASLNLAYN 363

Query: 340 FLKGNIPMQLLNH-GSLQLLSVSENCLSGF--MTSSFSLSSLVHLYVQRNDLSG------ 390
            +   IP         ++ LS + N L     +  + S+S +  +    N++        
Sbjct: 364 QITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422

Query: 391 -TIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG-------PISN 442
             +    F+   + +++L +N  S    +  +  S L  + L GN L           + 
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482

Query: 443 QFCQLRRLGVMDLSHNRINGSIPS 466
            F     L  +DL  N++      
Sbjct: 483 NFKNTYLLTSIDLRFNKLTKLSDD 506

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  170 bits (434), Expect = 6e-47
 Identities = 74/476 (15%), Positives = 148/476 (31%), Gaps = 68/476 (14%)

Query: 10  KLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSG 69
           +L  L    +  +        +     N              +N+  L  ++        
Sbjct: 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT 263

Query: 70  SLPSVIVNLASVEYLDLSNSYFEGTFPI-------SSLANHSKLKVLRLSSRNNNMLQLK 122
            LP+ +  L  ++ ++++ +       +       +      K++++ +    NN+    
Sbjct: 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG--YNNLKTFP 321

Query: 123 TENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHS-- 180
            E  L   ++K  L  L+  +N L G  PA    +  KL  L L  N  T    +P +  
Sbjct: 322 VETSL--QKMKK-LGMLECLYNQLEGKLPA--FGSEIKLASLNLAYNQITE---IPANFC 373

Query: 181 -KHDFLHHLDVSSNNFTGKLPQDKGII-LQKLLYIDMANNRFEG-------NLPSSIGDM 231
              + + +L  + N     +P       +  +  ID + N            L  +    
Sbjct: 374 GFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432

Query: 232 KTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNK 291
             ++ ++LS N  S     LF+    L  ++   N   +                +  N 
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE----------------IPKNS 476

Query: 292 FSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLN 351
              + E+    +  L  +D+  N L+     + A    YL  + +S N      P Q LN
Sbjct: 477 LKDENEN-FKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN 534

Query: 352 HGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNG 411
             +L+   +                       Q N      P  +     L  L +  N 
Sbjct: 535 SSTLKGFGIRNQ-----------------RDAQGNRTLREWPEGITLCPSLTQLQIGSND 577

Query: 412 FSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSC 467
              +       + N+ VL ++ N       +  C     G+  L +++    I  C
Sbjct: 578 IRKVNE---KITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ-DIRGC 629

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  164 bits (416), Expect = 2e-44
 Identities = 66/504 (13%), Positives = 144/504 (28%), Gaps = 73/504 (14%)

Query: 2   LFLGAGLHKLKNLEALDLSFNNINGTVESQESFE-------LNLAKNNIGGHLLDCLNNM 54
           LF   G+    + E       +   T    +  E         +  +     +       
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 55  TRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSR 114
            +   +    N ++  +   ++ L  +    + NS F     I     +   +  +    
Sbjct: 183 LKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVA-ENICEAWENENSEYAQQYKT 240

Query: 115 NNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGN 174
            +               LK  L  +++ +       P ++ +   +++++ +  N     
Sbjct: 241 EDLKWD----------NLKD-LTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISG 288

Query: 175 LQLPHSKHDF--------LHHLDVSSNNFTGKLPQDKGI-ILQKLLYIDMANNRFEGNLP 225
            QL               +  + +  NN     P +  +  ++KL  ++   N+ EG   
Sbjct: 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKT-FPVETSLQKMKKLGMLECLYNQLEG-KL 346

Query: 226 SSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYM---NLTRL 282
            + G    L  L+L+ N  +   +        +  L  +HN       P      +++ +
Sbjct: 347 PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY--IPNIFDAKSVSVM 404

Query: 283 WFLYLDNNKFSG-------KIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLL 335
             +    N+           ++    K   +  +++SNN +S       +  S  L  + 
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP-LSSIN 463

Query: 336 MSKNFLKG-------NIPMQLLNHGSLQLLSVSENCLSGFMTSSF--SLSSLVHLYVQRN 386
           +  N L         +      N   L  + +  N L+         +L  LV + +  N
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN 523

Query: 387 DLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQ 446
             S   P     SS L    +R+                      +GN            
Sbjct: 524 SFSK-FPTQPLNSSTLKGFGIRNQ------------------RDAQGNRTLREWPEGITL 564

Query: 447 LRRLGVMDLSHNRINGSIPSCFTN 470
              L  + +  N I         N
Sbjct: 565 CPSLTQLQIGSNDIRKVNEKITPN 588

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  144 bits (366), Expect = 1e-37
 Identities = 56/434 (12%), Positives = 120/434 (27%), Gaps = 65/434 (14%)

Query: 61  DTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFP--ISSLANHSKLKVLRLSSRNNNM 118
           +   +         + +   V  L L      G  P  I  L                  
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTE---------------- 106

Query: 119 LQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWI---LQNNTKLEVLCLTNNSFTGNL 175
                            L+ L L  +    +   +    +  N   E        +    
Sbjct: 107 -----------------LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTF 149

Query: 176 --QLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKT 233
               P      L    ++S+     + +    I  K   I   +N     +  ++  +  
Sbjct: 150 VDYDPREDFSDLIKDCINSDPQQKSIKKSSR-ITLKDTQIGQLSNNITF-VSKAVMRLTK 207

Query: 234 LTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFS 293
           L   ++  + F  E       C +    +  +   +     K+ NL  L  + + N    
Sbjct: 208 LRQFYMGNSPFVAEN-----ICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL 262

Query: 294 GKIEDGLLKSNQLKELDMSNNML--------SGHIPHWIANFSSYLEVLLMSKNFLK-GN 344
            K+   L    +++ ++++ N                        ++++ +  N LK   
Sbjct: 263 TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK-IQIIYIGYNNLKTFP 321

Query: 345 IPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMT 404
           +   L     L +L    N L G + +  S   L  L +  N ++    N    + ++  
Sbjct: 322 VETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN 381

Query: 405 LDLRDNGFSGI-ISDQINESSNLRVLLLRGNYLEGPISNQF-------CQLRRLGVMDLS 456
           L    N    I         S +  +    N +       F        +   +  ++LS
Sbjct: 382 LSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS 441

Query: 457 HNRINGSIPSCFTN 470
           +N+I+      F+ 
Sbjct: 442 NNQISKFPKELFST 455

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 69.7 bits (171), Expect = 8e-13
 Identities = 24/195 (12%), Positives = 59/195 (30%), Gaps = 14/195 (7%)

Query: 283 WFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLK 342
           W    + + +  +    L  + ++  L +     SG +P  I   +  LEVL +  +  K
Sbjct: 60  WNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTE-LEVLALGSHGEK 118

Query: 343 GN----IPMQLLNHGSLQLLSVSENCLSGFMTSSF---SLSSLVHLYVQRNDLSGTIPNA 395
            N     P  +  + S +                      S L+   +  +    +I  +
Sbjct: 119 VNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178

Query: 396 LFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDL 455
              + K   +    N  +  +S  +   + LR   +  +        +  +       + 
Sbjct: 179 SRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE-----NS 232

Query: 456 SHNRINGSIPSCFTN 470
            + +   +    + N
Sbjct: 233 EYAQQYKTEDLKWDN 247

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  170 bits (433), Expect = 6e-47
 Identities = 89/502 (17%), Positives = 157/502 (31%), Gaps = 49/502 (9%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESF-------ELNLAKNNIGGHLLDCLNNMTRLKVL 60
                 L+ LDLS   I       +++        L L  N I        + +T L+ L
Sbjct: 52  FSNFSELQWLDLSRCEI--ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109

Query: 61  DTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQ 120
                +L+      I  L +++ L++++++       +  +N + L  + LS   N +  
Sbjct: 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS--YNYIQT 167

Query: 121 LKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQ---- 176
           +   +     +       LD+S N +         Q   KL  L L  N  + N+     
Sbjct: 168 ITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQG-IKLHELTLRGNFNSSNIMKTCL 225

Query: 177 --LPHSKHDFLHHLDVSSNNFTGKLPQD--KGIILQKLLYIDMANNRFEGNLPSSIGDMK 232
             L       L   +               +G+    +    +       +       + 
Sbjct: 226 QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA 285

Query: 233 TLTFLHLSKNN--------FSGELSTL-----------FTGCVSLWFLDRSHNNFHDQIF 273
            ++ + L+  +           +  +L                 L  L  + N     I 
Sbjct: 286 NVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKG--SIS 343

Query: 274 PKYMNLTRLWFLYLDNNKFSGKIED--GLLKSNQLKELDMSNNMLSGHIPHWIANFSSYL 331
            K + L  L +L L  N  S         L +N L+ LD+S N     +          L
Sbjct: 344 FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEE-L 401

Query: 332 EVLLMSKNFLKGNIPMQLL-NHGSLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDLS 389
           + L    + LK         +   L  L +S           F  L+SL  L +  N   
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 390 GTIPNALFRS-SKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLR 448
               + +F + + L  LDL       I     +    L++L +  N L    S+ + QL 
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521

Query: 449 RLGVMDLSHNRINGSIPSCFTN 470
            L  +D S NRI  S       
Sbjct: 522 SLSTLDCSFNRIETSKGILQHF 543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  157 bits (400), Expect = 2e-42
 Identities = 89/485 (18%), Positives = 153/485 (31%), Gaps = 49/485 (10%)

Query: 13  NLEALDLSFNNINGTVESQESF-------ELNLAKNNIGGHLLDCLNNMTRLKVLDTSFN 65
           + + +DLSFN +   +    SF        L+L++  I        + +  L  L  + N
Sbjct: 33  STKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 66  QLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTEN 125
            +    P     L S+E L    +          +     LK L ++  +N    + +  
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVA--HN---FIHSCK 144

Query: 126 FLPTFQLKHDLKYLDLSHNNLAGDFPAWILQN----NTKLEVLCLTNNSFT----GNLQL 177
               F    +L ++DLS+N +        LQ           L ++ N          Q 
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 203

Query: 178 PHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTL--- 234
                  LH L +  N  +  + +     L  L    +    F+      I +   +   
Sbjct: 204 IK-----LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258

Query: 235 -----TFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDN 289
                    L+  N   +    F    ++  +  +  +             +   L +  
Sbjct: 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIR 316

Query: 290 NKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLK--GNIPM 347
            +        L     LK L ++ N  S  I        S L  L +S+N L   G    
Sbjct: 317 CQLKQFPTLDL---PFLKSLTLTMNKGS--ISFKKVALPS-LSYLDLSRNALSFSGCCSY 370

Query: 348 QLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRS-SKLMTLD 406
             L   SL+ L +S N       +   L  L HL  Q + L      + F S  KL+ LD
Sbjct: 371 SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430

Query: 407 LRDNGFSGIISDQINESSNLRVLLLRGNYL-EGPISNQFCQLRRLGVMDLSHNRINGSIP 465
           +                ++L  L + GN   +  +SN F     L  +DLS  ++     
Sbjct: 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490

Query: 466 SCFTN 470
             F  
Sbjct: 491 GVFDT 495

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  115 bits (291), Expect = 6e-28
 Identities = 82/429 (19%), Positives = 138/429 (32%), Gaps = 36/429 (8%)

Query: 58  KVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNN 117
                   +LS  +P  I   +S + +DLS +  +      S +N S+L+ L LS     
Sbjct: 14  ITYQCMDQKLS-KVPDDI--PSSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLS--RCE 67

Query: 118 MLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQL 177
           +  ++ +     +   H L  L L+ N +   F        T LE L             
Sbjct: 68  IETIEDK----AWHGLHHLSNLILTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLESF 122

Query: 178 PHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTF- 236
           P  +   L  L+V+ N             L  L+++D++ N  +    + +  ++     
Sbjct: 123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182

Query: 237 ---LHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPK-YMNLTRLWFLYLDNNKF 292
              L +S N         F G + L  L    N     I      NL  L    L   +F
Sbjct: 183 NLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241

Query: 293 SG--KIED------GLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGN 344
                +E         L    + E  ++               ++ +  + ++   +   
Sbjct: 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN-VSAMSLAGVSI--K 298

Query: 345 IPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMT 404
               +  H   Q LS+    L  F   +  L  L  L +  N  S  I         L  
Sbjct: 299 YLEDVPKHFKWQSLSIIRCQLKQF--PTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSY 354

Query: 405 LDLRDNGFSGIISD--QINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRING 462
           LDL  N  S           +++LR L L  N     +S  F  L  L  +D  H+ +  
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKR 413

Query: 463 SIP-SCFTN 470
               S F +
Sbjct: 414 VTEFSAFLS 422

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  102 bits (256), Expect = 2e-23
 Identities = 57/375 (15%), Positives = 109/375 (29%), Gaps = 49/375 (13%)

Query: 133 KHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSS 192
                        L+   P  I  +    + + L+ N          S    L  LD+S 
Sbjct: 10  VVPNITYQCMDQKLS-KVPDDIPSS---TKNIDLSFNPLKILKSYSFSNFSELQWLDLSR 65

Query: 193 NNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLF 252
                 +       L  L  + +  N  +   P S   + +L  L   +   +   S   
Sbjct: 66  CEIET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPI 124

Query: 253 TGCVSLWFLDRSHNNFHDQIFPKYM-NLTRLWFLYLDNNKFSG----------------- 294
              ++L  L+ +HN  H    P Y  NLT L  + L  N                     
Sbjct: 125 GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184

Query: 295 ----------KIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGN 344
                      I+D   +  +L EL +  N  S +I        + L V  +     K  
Sbjct: 185 SLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244

Query: 345 IPMQLLNHGSLQ--------LLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNA 395
             +++     ++           ++           F  L+++  + +    +       
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLED 302

Query: 396 LFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDL 455
           + +  K  +L +         +  +     L+ L L  N            L  L  +DL
Sbjct: 303 VPKHFKWQSLSIIRCQLKQFPTLDL---PFLKSLTLTMNKGSISFK--KVALPSLSYLDL 357

Query: 456 SHNRINGSIPSCFTN 470
           S N ++ S    +++
Sbjct: 358 SRNALSFSGCCSYSD 372

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  167 bits (425), Expect = 4e-45
 Identities = 59/477 (12%), Positives = 138/477 (28%), Gaps = 69/477 (14%)

Query: 3   FLGAGLHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDT 62
           F+   + +L  L+ +  + +       + +  + N        +     +N+  L  ++ 
Sbjct: 439 FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498

Query: 63  SFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLK 122
                   LP  + +L  ++ L+++ +       + +                       
Sbjct: 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK--------- 549

Query: 123 TENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFT-----GNLQL 177
                        ++   + +NNL     +  LQ   KL +L   +N        G    
Sbjct: 550 -------------IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVK 596

Query: 178 PHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPS-SIGDMKTLTF 236
                  L  L +  N     +P+D      ++  +  ++N+ +      +   +  +  
Sbjct: 597 -------LTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648

Query: 237 LHLSKNNFSGELSTLFTG-----CVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNK 291
           +  S N    E   +         ++   +  S+N         +   + +  + L NN 
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708

Query: 292 FS-------GKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGN 344
            +          +     +  L  +D+  N L+     + A    YL  + +S N     
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS- 767

Query: 345 IPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMT 404
            P Q LN   L+   +                       + N +    P  +     L+ 
Sbjct: 768 FPTQPLNSSQLKAFGIRHQ-----------------RDAEGNRILRQWPTGITTCPSLIQ 810

Query: 405 LDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRIN 461
           L +  N    +       +  L +L +  N          C     G+  L +++  
Sbjct: 811 LQIGSNDIRKVDE---KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  162 bits (412), Expect = 2e-43
 Identities = 79/508 (15%), Positives = 154/508 (30%), Gaps = 66/508 (12%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESFEL---------NLAKNNIGGHLLDCLNNMTRLK 58
           + +L  L+ L    ++   +       EL         +  + +     LD    +    
Sbjct: 343 IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402

Query: 59  VLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSS----- 113
           +L  + N+     P    +  S++   + N     TF   ++   +KL+++  ++     
Sbjct: 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY 462

Query: 114 --------RNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLC 165
                     N+    + EN   ++    DL  ++L +       P ++  +  +L+ L 
Sbjct: 463 DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLN 521

Query: 166 LTNNSFTGNLQLPHSKHDF---------LHHLDVSSNNFTGKLPQDKGII-LQKLLYIDM 215
           +  N      QL                +    +  NN     P    +  + KL  +D 
Sbjct: 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLGLLDC 580

Query: 216 ANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPK 275
            +N+       + G    LT L L  N               +  L  SHN       P 
Sbjct: 581 VHNKVRH--LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY--IPN 636

Query: 276 YM---NLTRLWFLYLDNNKFSGKIED-----GLLKSNQLKELDMSNNMLSGHIPHWIANF 327
                ++  +  +    NK   +  +        K      + +S N +        A  
Sbjct: 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG 696

Query: 328 SSYLEVLLMSKNFLK-------GNIPMQLLNHGSLQLLSVSENCLSGFMTSSF--SLSSL 378
           S  +  +++S N +                N   L  + +  N L+         +L  L
Sbjct: 697 SP-ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYL 755

Query: 379 VHLYVQRNDLSGTIPNALFRSSKLMTLDLR------DNGFSGIISDQINESSNLRVLLLR 432
            ++ V  N  S + P     SS+L    +R       N         I    +L  L + 
Sbjct: 756 SNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814

Query: 433 GNYLEGPISNQFCQLRRLGVMDLSHNRI 460
            N +         QL  L   D++ N  
Sbjct: 815 SNDIRKVDEKLTPQLYIL---DIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  156 bits (397), Expect = 2e-41
 Identities = 67/460 (14%), Positives = 134/460 (29%), Gaps = 39/460 (8%)

Query: 35  ELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGT 94
             N   +  G      L+N  R+  L  +     G +P  I  L  ++ L         +
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 95  FPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWI 154
             +      +         R     +    ++     L  DL    ++ N          
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS-DLLQDAINRNPEMKPIKKDS 421

Query: 155 LQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYID 214
             +    ++  LTN     +  +       L  +  +++ FT         I       +
Sbjct: 422 RISLKDTQIGNLTNRITFISKAIQRLTK--LQIIYFANSPFTY------DNIAVDWEDAN 473

Query: 215 MANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHD---- 270
               +   N   S  ++K LT + L       +L         L  L+ + N        
Sbjct: 474 SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQL 533

Query: 271 -----QIFPKYMNLTRLWFLYLDNNKFSG-KIEDGLLKSNQLKELDMSNNMLSGHIPHWI 324
                ++        ++   Y+  N          L K  +L  LD  +N +  H+    
Sbjct: 534 KADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA-F 591

Query: 325 ANFSSYLEVLLMSKNFLKGNIPMQLLNH-GSLQLLSVSENCLSGF--MTSSFSLSSLVHL 381
                 L  L +  N ++  IP         ++ L  S N L     + ++ S+  +  +
Sbjct: 592 GTNVK-LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSV 649

Query: 382 YVQRNDLSGTIPNAL-----FRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYL 436
               N +     N       ++     T+ L  N      ++     S +  ++L  N +
Sbjct: 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709

Query: 437 E-------GPISNQFCQLRRLGVMDLSHNRINGSIPSCFT 469
                    P    +     L  +DL  N++  S+   F 
Sbjct: 710 TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFR 748

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  138 bits (349), Expect = 3e-35
 Identities = 61/429 (14%), Positives = 123/429 (28%), Gaps = 55/429 (12%)

Query: 60  LDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNML 119
            +   +         + N   V  L L+    +G  P  ++   ++LKVL       +  
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVP-DAIGQLTELKVLSFG---THSE 359

Query: 120 QLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPH 179
              T +       +      +   + +   +    L  + +L +  L  ++   N ++  
Sbjct: 360 ---TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416

Query: 180 SKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHL 239
            K D    L                    K   I    NR    +  +I  +  L  ++ 
Sbjct: 417 IKKDSRISL--------------------KDTQIGNLTNRITF-ISKAIQRLTKLQIIYF 455

Query: 240 SKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDG 299
           + + F+          V     +  +   ++     + NL  L  + L N     ++ D 
Sbjct: 456 ANSPFTY-----DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF 510

Query: 300 LLKSNQLKELDMSNNMLSG---------HIPHWIANFSSYLEVLLMSKNFLKG-NIPMQL 349
           L    +L+ L+++ N              +          +++  M  N L+       L
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK-IQIFYMGYNNLEEFPASASL 569

Query: 350 LNHGSLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFR-SSKLMTLDL 407
                L LL    N +      +F     L  L +  N +   IP      + ++  L  
Sbjct: 570 QKMVKLGLLDCVHNKVRHL--EAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGF 626

Query: 408 RDNGFSGI-ISDQINESSNLRVLLLRGNYLEGPISNQFC-----QLRRLGVMDLSHNRIN 461
             N    I           +  +    N +     N  C     +      + LS+N I 
Sbjct: 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ 686

Query: 462 GSIPSCFTN 470
                 F  
Sbjct: 687 KFPTELFAT 695

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 83.4 bits (206), Expect = 4e-17
 Identities = 26/220 (11%), Positives = 65/220 (29%), Gaps = 12/220 (5%)

Query: 257 SLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNML 316
             W  ++  + + DQ      N  R+  L L      G++ D + +  +LK L    +  
Sbjct: 300 LNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSE 359

Query: 317 SGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLS 376
           +     +     +                 M L     L L  + ++ ++        + 
Sbjct: 360 TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN-PEMKPIK 418

Query: 377 SLVHLYVQRNDLSG------TIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLL 430
               + ++   +         I  A+ R +KL  +   ++ F+         + +     
Sbjct: 419 KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDN-----IAVDWEDAN 473

Query: 431 LRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
                        +  L+ L  ++L +      +P    +
Sbjct: 474 SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.5 bits (157), Expect = 4e-11
 Identities = 32/185 (17%), Positives = 61/185 (32%), Gaps = 21/185 (11%)

Query: 2   LFLGAGLHKLKNLEALDLSFNNINGTVESQES-----FELNLAKNNIG-------GHLLD 49
           +      +K  N   + LS+N I        +       + L+ N +             
Sbjct: 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG 722

Query: 50  CLNNMTRLKVLDTSFNQLSGSLPSVIV--NLASVEYLDLSNSYFEGTFPISSLANHSKLK 107
              N   L  +D  FN+L+ SL        L  +  +D+S + F  +FP +   N S+LK
Sbjct: 723 NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFP-TQPLNSSQLK 779

Query: 108 VLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLT 167
              +  + +         +         L  L +  N++       +      L +L + 
Sbjct: 780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQ---LYILDIA 835

Query: 168 NNSFT 172
           +N   
Sbjct: 836 DNPNI 840

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  158 bits (402), Expect = 7e-45
 Identities = 69/258 (26%), Positives = 108/258 (41%), Gaps = 6/258 (2%)

Query: 213 IDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGE--LSTLFTGCVSLWFLDRSH-NNFH 269
            D  N  + G L  +      +  L LS  N      + +       L FL     NN  
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 270 DQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSS 329
             I P    LT+L +LY+ +   SG I D L +   L  LD S N LSG +P  I++  +
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 330 YLEVLLMSKNFLKGNIPMQLLNHGSL-QLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDL 388
            L  +    N + G IP    +   L   +++S N L+G +  +F+  +L  + + RN L
Sbjct: 151 -LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML 209

Query: 389 SGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLR 448
            G              + L  N  +  +  ++  S NL  L LR N + G +     QL+
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 449 RLGVMDLSHNRINGSIPS 466
            L  +++S N + G IP 
Sbjct: 269 FLHSLNVSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  156 bits (398), Expect = 3e-44
 Identities = 65/272 (23%), Positives = 119/272 (43%), Gaps = 6/272 (2%)

Query: 166 LTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGI-ILQKLLYIDMAN-NRFEGN 223
             N ++ G L    ++   +++LD+S  N     P    +  L  L ++ +   N   G 
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92

Query: 224 LPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLW 283
           +P +I  +  L +L+++  N SG +    +   +L  LD S+N     + P   +L  L 
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152

Query: 284 FLYLDNNKFSGKIEDGLLK-SNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLK 342
            +  D N+ SG I D     S     + +S N L+G IP   AN +  L  + +S+N L+
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--LAFVDLSRNMLE 210

Query: 343 GNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKL 402
           G+  +   +  + Q + +++N L+  +       +L  L ++ N + GT+P  L +   L
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

Query: 403 MTLDLRDNGFSGIISDQINESSNLRVLLLRGN 434
            +L++  N   G I  Q        V     N
Sbjct: 271 HSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  156 bits (397), Expect = 4e-44
 Identities = 69/268 (25%), Positives = 105/268 (39%), Gaps = 19/268 (7%)

Query: 60  LDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPIS-SLANHSKLKVLRLSSRNNNM 118
            D       G L         V  LDLS       +PI  SLAN   L  L +   NN  
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL- 89

Query: 119 LQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNL--- 175
                    P       L YL ++H N++G  P ++      L  L  + N+ +G L   
Sbjct: 90  ----VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKTLVTLDFSYNALSGTLPPS 144

Query: 176 --QLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKT 233
              LP+     L  +    N  +G +P   G   +    + ++ NR  G +P +  ++  
Sbjct: 145 ISSLPN-----LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN- 198

Query: 234 LTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFS 293
           L F+ LS+N   G+ S LF    +   +  + N+    +  K      L  L L NN+  
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIY 257

Query: 294 GKIEDGLLKSNQLKELDMSNNMLSGHIP 321
           G +  GL +   L  L++S N L G IP
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  138 bits (349), Expect = 2e-37
 Identities = 64/293 (21%), Positives = 105/293 (35%), Gaps = 45/293 (15%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESF-------ELNLAK-NNIGGHLLDCLNNMTRLKV 59
             +   +  LDLS  N+        S         L +   NN+ G +   +  +T+L  
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 60  LDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNML 119
           L  +   +SG++P  +  + ++  LD S +   GT P  S+++        L +      
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-PSISS--------LPN------ 150

Query: 120 QLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPH 179
                           L  +    N ++G  P      +     + ++ N  TG   +P 
Sbjct: 151 ----------------LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK--IPP 192

Query: 180 SKHDF-LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLH 238
           +  +  L  +D+S N   G      G   +    I +A N    +L   +G  K L  L 
Sbjct: 193 TFANLNLAFVDLSRNMLEGDASVLFG-SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLD 250

Query: 239 LSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNK 291
           L  N   G L    T    L  L+ S NN   +I P+  NL R       NNK
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  115 bits (291), Expect = 3e-29
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 5/186 (2%)

Query: 289 NNKFSGKIEDGLLKSNQLKELDMSNNMLSG--HIPHWIANFSSYLEVLLMSKNFLKGNIP 346
           N  + G + D   ++ ++  LD+S   L     IP  +AN      + +   N L G IP
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 347 MQLLNHGSLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRSSKLMTL 405
             +     L  L ++   +SG +    S + +LV L    N LSGT+P ++     L+ +
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 406 DLRDNGFSGIISDQI-NESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSI 464
               N  SG I D   + S     + +  N L G I   F  L  L  +DLS N + G  
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA 213

Query: 465 PSCFTN 470
              F +
Sbjct: 214 SVLFGS 219

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 90.7 bits (226), Expect = 2e-20
 Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 4/138 (2%)

Query: 337 SKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYV----QRNDLSGTI 392
                 G +         +  L +S   L        SL++L +L        N+L G I
Sbjct: 34  CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI 93

Query: 393 PNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGV 452
           P A+ + ++L  L +     SG I D +++   L  L    N L G +      L  L  
Sbjct: 94  PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153

Query: 453 MDLSHNRINGSIPSCFTN 470
           +    NRI+G+IP  + +
Sbjct: 154 ITFDGNRISGAIPDSYGS 171

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  150 bits (380), Expect = 3e-39
 Identities = 92/496 (18%), Positives = 167/496 (33%), Gaps = 50/496 (10%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESF-------ELNLAKNNIGGHLLDCLNNMTRLKVL 60
              L+ L+ L+L       T++  E+F        L+L  + I     D    +  L  L
Sbjct: 44  FPFLEQLQLLELGSQYTPLTIDK-EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102

Query: 61  DTSFNQLSGSL--PSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNM 118
              F  LS ++       NL ++  LDLS +     +   S    + LK +  S  +N +
Sbjct: 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS--SNQI 160

Query: 119 LQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLP 178
             +      P       L +  L+ N+L         +       + L     +GN    
Sbjct: 161 FLVCEHELEPLQGKT--LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV 218

Query: 179 HSKHDFLHHLDVSSNNFTGKLPQDKGIILQK------------------LLYIDMANNRF 220
               +F + +  S            G                       + ++D+++   
Sbjct: 219 DITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV 278

Query: 221 EGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLT 280
                     +K L  L+L+ N  +      F G  +L  L+ S+N   +     +  L 
Sbjct: 279 FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338

Query: 281 RLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNF 340
           ++ ++ L  N  +   +       +L+ LD+ +N L+  I          +  + +S N 
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIHFI-----PSIPDIFLSGNK 392

Query: 341 LKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF--SLSSLVHLYVQRNDLSGTIPNALFR 398
           L   +P   L   +  L+ +SEN L       F   +  L  L + +N  S    +    
Sbjct: 393 LV-TLPKINL---TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448

Query: 399 S-SKLMTLDLRDNGFSGIISDQINES-----SNLRVLLLRGNYLEGPISNQFCQLRRLGV 452
               L  L L +N        ++        S+L+VL L  NYL       F  L  L  
Sbjct: 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508

Query: 453 MDLSHNRINGSIPSCF 468
           + L+ NR+     +  
Sbjct: 509 LSLNSNRLTVLSHNDL 524

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  120 bits (302), Expect = 3e-29
 Identities = 77/442 (17%), Positives = 151/442 (34%), Gaps = 43/442 (9%)

Query: 53  NMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLS 112
            +   + L  SFN +     S    L  ++ L+L + Y   T    +  N   L++L L 
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 113 SRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDF-PAWILQNNTKLEVLCLTNNSF 171
             ++ +  L  + F   F L      L L    L+         +N   L  L L+ N  
Sbjct: 82  --SSKIYFLHPDAFQGLFHLFE----LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135

Query: 172 TG-NLQLPHSKHDFLHHLDVSSNNFTGKLPQD-KGIILQKLLYIDMANNRFEGNLPSSIG 229
               L     K + L  +D SSN        + + +  + L +  +A N     +    G
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195

Query: 230 ------DMKTLTFLHLSKNNFSGELSTLFTGCVS------------LWFLDRSHNNFHDQ 271
                     L  L +S N ++ +++  F+  +S            +       +N  D 
Sbjct: 196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255

Query: 272 IFPKYMNLTR--LWFLYLDNNKFSGKIEDGLLKS-NQLKELDMSNNMLSGHIPHWIANFS 328
               +  L R  +  L L +      +   + ++   LK L+++ N ++           
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD 314

Query: 329 SYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQRND 387
           + L+VL +S N L             +  + + +N ++     +F  L  L  L ++ N 
Sbjct: 315 N-LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373

Query: 388 LSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG-PISNQFCQ 446
           L+      +     +  + L  N    +       +    ++ L  N LE   I     +
Sbjct: 374 LT-----TIHFIPSIPDIFLSGNKLVTLPKI----NLTANLIHLSENRLENLDILYFLLR 424

Query: 447 LRRLGVMDLSHNRINGSIPSCF 468
           +  L ++ L+ NR +       
Sbjct: 425 VPHLQILILNQNRFSSCSGDQT 446

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  114 bits (288), Expect = 2e-27
 Identities = 94/493 (19%), Positives = 175/493 (35%), Gaps = 65/493 (13%)

Query: 2   LFLGAGLHKLKNLEALDLSFNNINGTVESQESF---------ELNLAKNNIGG------- 45
           L+L     KL +L+++D S N I   +  +              +LA N++         
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQI--FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195

Query: 46  -----------HLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGT 94
                       +LD   N   + +     N +S S    ++    +          +  
Sbjct: 196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-D 254

Query: 95  FPISSLAN--HSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPA 152
              ++ A    S ++ L LS  +  +  L +      F+   DLK L+L++N +      
Sbjct: 255 PDQNTFAGLARSSVRHLDLS--HGFVFSLNSR----VFETLKDLKVLNLAYNKIN-KIAD 307

Query: 153 WILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLH---HLDVSSNNFTGKLPQDKGIILQK 209
                   L+VL L+ N      +L  S    L    ++D+  N+    +       L+K
Sbjct: 308 EAFYGLDNLQVLNLSYNLLG---ELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEK 363

Query: 210 LLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFH 269
           L  +D+ +N       ++I  + ++  + LS N     L TL    ++   +  S N   
Sbjct: 364 LQTLDLRDNAL-----TTIHFIPSIPDIFLSGNK----LVTLPKINLTANLIHLSENRLE 414

Query: 270 D-QIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSN-QLKELDMSNNMLSGHIPHWIANF 327
           +  I    + +  L  L L+ N+FS    D     N  L++L +  NML       +   
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474

Query: 328 S----SYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYV 383
                S+L+VL ++ N+L    P    +  +L+ LS++ N L+    +    ++L  L +
Sbjct: 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL-PANLEILDI 533

Query: 384 QRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQ 443
            RN L    P+       L  LD+  N F          +      +             
Sbjct: 534 SRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVY 590

Query: 444 FCQLRRLGVMDLS 456
                 + +  LS
Sbjct: 591 PDSFSGVSLFSLS 603

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  113 bits (285), Expect = 6e-27
 Identities = 67/363 (18%), Positives = 119/363 (32%), Gaps = 32/363 (8%)

Query: 134 HDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSN 193
            D +       NL       + Q     E L L+ N             + L  L++ S 
Sbjct: 4   FDGRIAFYRFCNLT-----QVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ 58

Query: 194 NFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGEL--STL 251
                + ++    L  L  +D+ +++     P +   +  L  L L     S  +     
Sbjct: 59  YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118

Query: 252 FTGCVSLWFLDRSHNNFHDQIFPKYM-NLTRLWFLYLDNNKFSGKIEDGL--LKSNQLKE 308
           F    +L  LD S N             L  L  +   +N+     E  L  L+   L  
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178

Query: 309 LDMSNNMLSGHIPHWIANFSS-----YLEVLLMSKNFLKGNIP------------MQLLN 351
             ++ N L   +        +      LE+L +S N    +I               L+ 
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238

Query: 352 HGSLQLLSVSENCLSGFMTSSFS---LSSLVHLYVQRNDLSGTIPNALFRS-SKLMTLDL 407
              +       + +     ++F+    SS+ HL +    +  ++ + +F +   L  L+L
Sbjct: 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNL 297

Query: 408 RDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSC 467
             N  + I  +      NL+VL L  N L    S+ F  L ++  +DL  N I       
Sbjct: 298 AYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357

Query: 468 FTN 470
           F  
Sbjct: 358 FKF 360

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  138 bits (350), Expect = 9e-36
 Identities = 94/503 (18%), Positives = 157/503 (31%), Gaps = 58/503 (11%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESF-------ELNLAKNNIGGHLLDCLNNMTRLKVL 60
                 L+ LDLS   I        ++        L L  N I    L   + ++ L+ L
Sbjct: 48  FFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105

Query: 61  DTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQ 120
                 L+      I +L +++ L+++++  +        +N + L+ L LS  +N +  
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS--SNKIQS 163

Query: 121 LKTENFLPTFQLKHD-----------------------LKYLDLSHNNLAGDFPAWILQN 157
           +   +     Q+                          L  L L +N  + +     +Q 
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223

Query: 158 NTKLEVLCLTNNSFTGNLQLPHSKHDFL--------HHLDVSSNNFTGKLPQDKGIILQK 209
              LEV  L    F     L       L            ++  ++      D    L  
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283

Query: 210 LLYIDMANNRFEGNLPSSIGD-MKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNF 268
           +    + +   E     S     + L  ++     F            SL  L  + N  
Sbjct: 284 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP------TLKLKSLKRLTFTSNKG 337

Query: 269 HDQIFPKYMNLTRLWFLYLDNNK--FSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIAN 326
            +      ++L  L FL L  N   F G        +  LK LD+S N +   +      
Sbjct: 338 GN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLG 394

Query: 327 FSSYLEVLLMSKNFLKGNIPMQLLNH-GSLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQ 384
               LE L    + LK      +     +L  L +S           F+ LSSL  L + 
Sbjct: 395 LEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 385 RNDLSGTIPNALFRS-SKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQ 443
            N         +F     L  LDL       +     N  S+L+VL +  N L+      
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513

Query: 444 FCQLRRLGVMDLSHNRINGSIPS 466
           F +L  L  + L  N  + S P 
Sbjct: 514 FDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  126 bits (319), Expect = 1e-31
 Identities = 92/476 (19%), Positives = 163/476 (34%), Gaps = 55/476 (11%)

Query: 35  ELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGT 94
            L+L+ N +         +   L+VLD S  ++         +L+ +  L L+ +  + +
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-S 90

Query: 95  FPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWI 154
             + + +  S L+ L       N+  L+             LK L+++HN +        
Sbjct: 91  LALGAFSGLSSLQKLVAV--ETNLASLENF----PIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 155 LQNNTKLEVLCLTNNSFT----------GNLQLPHSKHDF-----------------LHH 187
             N T LE L L++N               + L +   D                  LH 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204

Query: 188 LDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGN---LPSSIGDMKTLTFLHLSKNN- 243
           L + +N  +  + +     L  L    +    F             ++ L  L + +   
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 244 -----FSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIED 298
                +  ++  LF    ++            +    +        L L N KF      
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKFGQFPTL 322

Query: 299 GLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFL--KGNIPMQLLNHGSLQ 356
            L     LK L  ++N                LE L +S+N L  KG          SL+
Sbjct: 323 KL---KSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 357 LLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRS-SKLMTLDLRDNGFSGI 415
            L +S N +    ++   L  L HL  Q ++L      ++F S   L+ LD+        
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 416 ISDQINESSNLRVLLLRGNYL-EGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
            +   N  S+L VL + GN   E  + + F +LR L  +DLS  ++    P+ F +
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  126 bits (318), Expect = 2e-31
 Identities = 87/411 (21%), Positives = 141/411 (34%), Gaps = 29/411 (7%)

Query: 4   LGAGLHKLKNLEALDLSFNNINGTVES---------QESFELNLAKNNIGGHLLDCLNNM 54
           L      L NLE LDLS N I     +           +  L+L+ N +          +
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 55  TRLKVLDTSFNQLSGSLPS-VIVNLASVEYLDLSNSYFEGTFPISSLANH--SKLKVLRL 111
            RL  L    N  S ++    I  LA +E   L    F     +          L  L +
Sbjct: 201 -RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 112 SSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSF 171
                  L    ++ +  F    ++    L    +           N   + L L N  F
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKF 316

Query: 172 TGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNR--FEGNLPSSIG 229
               Q P  K   L  L  +SN           + L  L ++D++ N   F+G    S  
Sbjct: 317 G---QFPTLKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 230 DMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYM--NLTRLWFLYL 287
              +L +L LS N     +S+ F G   L  LD  H+N    +    +  +L  L +L +
Sbjct: 371 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ-MSEFSVFLSLRNLIYLDI 428

Query: 288 DNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPM 347
            +              + L+ L M+ N    +    I      L  L +S+  L+   P 
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 348 QLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALF 397
              +  SLQ+L+++ N L       F  L+SL  +++  N    + P   +
Sbjct: 489 AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 1/109 (0%)

Query: 354 SLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGF 412
           S + L +S N L    + SF     L  L + R ++      A    S L TL L  N  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 413 SGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRIN 461
             +     +  S+L+ L+     L    +     L+ L  ++++HN I 
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  121 bits (305), Expect = 7e-30
 Identities = 76/474 (16%), Positives = 153/474 (32%), Gaps = 35/474 (7%)

Query: 8   LHKLKNLEALDLSFNNI----NGTVESQESFE-LNLAKNNIGGHLLDCLNNMTRLKVLDT 62
           L    NL+ L L  + I         S  S E L+L+ N++          ++ LK L+ 
Sbjct: 46  LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105

Query: 63  SFNQLSG-SLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQL 121
             N      + S+  NL +++ L + N            A  + L  L +     ++   
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK--ALSLRNY 163

Query: 122 KTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSK 181
           ++++         D+ +L L  +  A           + +  L L + +       P   
Sbjct: 164 QSQSLKSI----RDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218

Query: 182 HDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSK 241
            +    +   +      L  +    L KLL   +  +           D         + 
Sbjct: 219 DEVSSPMKKLAFR-GSVLTDESFNELLKLLRYILELSEV------EFDDCTLNGLGDFNP 271

Query: 242 NNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLL 301
           +             V++  L          +   Y  L ++  + ++N+K    +     
Sbjct: 272 SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFS 330

Query: 302 KS-NQLKELDMSNNMLSGHIPHWIANFSSY--LEVLLMSKNFLK--GNIPMQLLNHGSLQ 356
           +    L+ LD+S N++        A   ++  L+ L++S+N L+        LL   +L 
Sbjct: 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390

Query: 357 LLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGII 416
            L +S N       S      +  L +    +   +   + ++  L  LD+ +N      
Sbjct: 391 SLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQT--LEVLDVSNNNLDSFS 447

Query: 417 SDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
                    L+ L +  N L+            L VM +S N++       F  
Sbjct: 448 LF----LPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDR 495

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  111 bits (279), Expect = 2e-26
 Identities = 72/415 (17%), Positives = 148/415 (35%), Gaps = 36/415 (8%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESF-------ELNLAKNNIGGHLLDCLNNMTRLKVL 60
              L NL+ L +        +  +  F       EL +   ++  +    L ++  +  L
Sbjct: 119 FPNLTNLQTLRIGNVETFSEI-RRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177

Query: 61  DTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQ 120
               ++ +  L      L+SV YL+L ++            +     + +L+ R + +  
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237

Query: 121 LKTENFLPTFQLKHDLKYLDLSHNNLAG-----DFPAWILQNNTKLEVLCLTNNSFTGNL 175
                 L   +   +L  ++     L G        + ++    K+E + +         
Sbjct: 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297

Query: 176 QLPHSKHDF-----LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNL---PSS 227
                   +     +  + V ++     +P      L+ L ++D++ N          + 
Sbjct: 298 LFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC 356

Query: 228 IGDMKTLTFLHLSKNNFS--GELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFL 285
            G   +L  L LS+N+     +   +     +L  LD S N FH  +        ++ FL
Sbjct: 357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFL 415

Query: 286 YLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNI 345
            L +      ++  + ++  L+ LD+SNN L        + F   L+ L +S+N LK   
Sbjct: 416 NLSSTGIR-VVKTCIPQT--LEVLDVSNNNLDS-----FSLFLPRLQELYISRNKLKTLP 467

Query: 346 PMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRS 399
              L     L ++ +S N L       F  L+SL  +++  N    + P   + S
Sbjct: 468 DASLFP--VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 520

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  110 bits (278), Expect = 3e-26
 Identities = 65/420 (15%), Positives = 142/420 (33%), Gaps = 24/420 (5%)

Query: 55  TRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSR 114
             +K LD SFN+++      +   A+++ L L +S    T    +  +   L+ L LS  
Sbjct: 26  AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLS-- 82

Query: 115 NNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGN 174
           +N++  L +  F P   LK+    L+L  N         +  N T L+ L + N      
Sbjct: 83  DNHLSSLSSSWFGPLSSLKY----LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138

Query: 175 LQLPH-SKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKT 233
           ++    +    L+ L++ + +            ++ + ++ +  +     L      + +
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197

Query: 234 LTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFS 293
           + +L L   N +    +          + +            +  L +L    L+ ++  
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

Query: 294 GKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHG 353
                       L  L   N   S  +       +  +  L + + +L  ++        
Sbjct: 258 -------FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE 310

Query: 354 SLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTI---PNALFRSSKLMTLDLRD 409
            ++ ++V  + +     S    L SL  L +  N +                L TL L  
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

Query: 410 NGFSGI--ISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSC 467
           N    +    + +    NL  L +  N    P+ +      ++  ++LS   I   + +C
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTC 428

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 90.9 bits (226), Expect = 9e-20
 Identities = 57/344 (16%), Positives = 111/344 (32%), Gaps = 29/344 (8%)

Query: 139 LDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGK 198
            D    +     P+ +      ++ L L+ N  T            L  L + S+     
Sbjct: 10  CDGRSRSFT-SIPSGLTAA---MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-T 64

Query: 199 LPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSG-ELSTLFTGCVS 257
           +  D    L  L ++D+++N       S  G + +L +L+L  N +    +++LF    +
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124

Query: 258 LWFLDRSHNNFHDQIFPKY-MNLTRLWFLYLDNNKFSGKIEDGLLKS-NQLKELDMSNNM 315
           L  L   +     +I       LT L  L +         +   LKS   +  L +  + 
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSE 183

Query: 316 LSGHIPHWIANFSSYLEVLLMSKNFLKGN-----------IPMQLLNHGSLQLLSVSENC 364
            +  +    A+  S +  L +    L               PM+ L      L   S N 
Sbjct: 184 SA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242

Query: 365 LSGFMTSSFSLSSLVHLYVQRNDLSGTIPN--------ALFRSSKLMTLDLRDNGFSGII 416
           L   +     LS +       N L    P+            +  +  L +        +
Sbjct: 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302

Query: 417 SDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRI 460
           S   +    ++ + +  + +     +    L+ L  +DLS N +
Sbjct: 303 STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 78.2 bits (193), Expect = 1e-15
 Identities = 57/314 (18%), Positives = 101/314 (32%), Gaps = 49/314 (15%)

Query: 1   MLFLGAGLHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVL 60
           +L L   + +L  +E  D + N +     S+      L K                ++ L
Sbjct: 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK-----------VETVTIRRL 291

Query: 61  DTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQ 120
                 L   L +V   L  V+ + + NS      P S   +   L+ L LS   N M++
Sbjct: 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLS--ENLMVE 348

Query: 121 LKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHS 180
              +N          L+ L LS N                L  +  T             
Sbjct: 349 EYLKNSACKGAWPS-LQTLVLSQN---------------HLRSMQKTGEILLTLKN---- 388

Query: 181 KHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLS 240
               L  LD+S N F       +    +K+ ++++++      + + I   +TL  L +S
Sbjct: 389 ----LTSLDISRNTFHPMPDSCQW--PEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVS 439

Query: 241 KNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGL 300
            NN    L +       L  L  S N       P       L  + +  N+     +   
Sbjct: 440 NNN----LDSFSLFLPRLQELYISRNKLKT--LPDASLFPVLLVMKISRNQLKSVPDGIF 493

Query: 301 LKSNQLKELDMSNN 314
            +   L+++ +  N
Sbjct: 494 DRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 41/252 (16%), Positives = 82/252 (32%), Gaps = 27/252 (10%)

Query: 2   LFLGAGLHKLKNLEALDLSFNNINGTVESQESF-----ELNLAKNNIGGHLLDCLNNMTR 56
           +    G  +   +  L +    +   + +  S       + +  + +         ++  
Sbjct: 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS 335

Query: 57  LKVLDTSFNQLSGSL---PSVIVNLASVEYLDLSNSYFEG-TFPISSLANHSKLKVLRLS 112
           L+ LD S N +        +      S++ L LS ++          L     L  L +S
Sbjct: 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS 395

Query: 113 SRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFT 172
               N           + Q    +++L+LS   +       I Q    LEVL ++NN+  
Sbjct: 396 ---RNTFH----PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQT---LEVLDVSNNNLD 444

Query: 173 GNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMK 232
                       L  L +S N     LP     +   LL + ++ N+ +         + 
Sbjct: 445 SFSLFLPR----LQELYISRNKLK-TLP--DASLFPVLLVMKISRNQLKSVPDGIFDRLT 497

Query: 233 TLTFLHLSKNNF 244
           +L  + L  N +
Sbjct: 498 SLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 49/241 (20%), Positives = 81/241 (33%), Gaps = 9/241 (3%)

Query: 234 LTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFS 293
                    +F+   S L     ++  LD S N               L  L L +++ +
Sbjct: 7   SGVCDGRSRSFTSIPSGLTA---AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63

Query: 294 GKIEDGLLKSN-QLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNH 352
             IE     S   L+ LD+S+N LS     W    SS L+ L +  N  +      L  +
Sbjct: 64  -TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS-LKYLNLMGNPYQTLGVTSLFPN 121

Query: 353 -GSLQLLSVS-ENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRD 409
             +LQ L +      S      F+ L+SL  L ++   L      +L     +  L L  
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 410 NGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFT 469
           +  + ++    +  S++R L LR   L     +          M     R +      F 
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

Query: 470 N 470
            
Sbjct: 242 E 242

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  116 bits (293), Expect = 2e-28
 Identities = 98/459 (21%), Positives = 166/459 (36%), Gaps = 47/459 (10%)

Query: 7   GLHKLKNLEALDLSFNNINGTVESQESF----ELNLAKNNIGGHLLDCLNNMTRLKVLDT 62
               L       L   N+  TV SQ        L   +  I    +D +  +  L  ++ 
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINF 75

Query: 63  SFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLK 122
           S NQL+   P  + NL  +  + ++N+      P+++L N   L  L L    NN +   
Sbjct: 76  SNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTN---LTGLTLF---NNQI--- 124

Query: 123 TENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKH 182
               +   +   +L  L+LS N ++       L   T L+ L   N         P +  
Sbjct: 125 --TDIDPLKNLTNLNRLELSSNTISDISA---LSGLTSLQQLSFGNQVTD---LKPLANL 176

Query: 183 DFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKN 242
             L  LD+SSN  +      K   L  L  +   NN+      + +G +  L  L L+ N
Sbjct: 177 TTLERLDISSNKVSDISVLAK---LTNLESLIATNNQISD--ITPLGILTNLDELSLNGN 231

Query: 243 NFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLK 302
               ++ T      +L  LD ++N   +        LT+L  L L  N+ S      L  
Sbjct: 232 QLK-DIGT-LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAG 285

Query: 303 SNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSE 362
              L  L+++ N L    P  I+N  + L  L +  N +    P+  L    LQ L    
Sbjct: 286 LTALTNLELNENQLEDISP--ISNLKN-LTYLTLYFNNISDISPVSSLT--KLQRLFFYN 340

Query: 363 NCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINE 422
           N +S   + + +L+++  L    N +S   P  L   +++  L L D  ++    +    
Sbjct: 341 NKVSDVSSLA-NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKAN 397

Query: 423 SSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRIN 461
            S    +      L  P              D++ N  +
Sbjct: 398 VSIPNTVKNVTGALIAP--ATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  113 bits (285), Expect = 2e-27
 Identities = 86/420 (20%), Positives = 154/420 (36%), Gaps = 42/420 (10%)

Query: 51  LNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLR 110
              +            ++ ++     +L  V  L       +    I  +   + L  + 
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS---IDGVEYLNNLTQIN 74

Query: 111 LSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNS 170
            S   NN L     +  P   L   L  + +++N +A   P   L N T L  L L NN 
Sbjct: 75  FS---NNQL----TDITPLKNLTK-LVDILMNNNQIADITP---LANLTNLTGLTLFNNQ 123

Query: 171 FTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGD 230
            T    L +  +  L+ L++SSN  +          L  L  +   N   +      + +
Sbjct: 124 ITDIDPLKNLTN--LNRLELSSNTISDISALSG---LTSLQQLSFGNQVTD---LKPLAN 175

Query: 231 MKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNN 290
           + TL  L +S N  S    ++     +L  L  ++N   D        LT L  L L+ N
Sbjct: 176 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGN 231

Query: 291 KFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLL 350
           +        L     L +LD++NN +S   P  ++  +  L  L +  N +    P+  L
Sbjct: 232 QLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTK-LTELKLGANQISNISPLAGL 286

Query: 351 NHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDN 410
              +L  L ++EN L    +   +L +L +L +  N++S   P  +   +KL  L   +N
Sbjct: 287 T--ALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN 341

Query: 411 GFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
             S + S  +   +N+  L    N +          L R+  + L+      +  +   N
Sbjct: 342 KVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKAN 397

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  106 bits (267), Expect = 4e-25
 Identities = 92/405 (22%), Positives = 153/405 (37%), Gaps = 48/405 (11%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESF----ELNLAKNNIGGHLLDCLNNMTRLKVLDTS 63
           L  L  L  + ++ N I   +    +      L L  N I    +D L N+T L  L+ S
Sbjct: 86  LKNLTKLVDILMNNNQIAD-ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELS 142

Query: 64  FNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRN-------N 116
            N +S    S +  L S++ L   N   +    +  LAN + L+ L +SS          
Sbjct: 143 SNTISD--ISALSGLTSLQQLSFGNQVTD----LKPLANLTTLERLDISSNKVSDISVLA 196

Query: 117 NMLQLKT--------ENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTN 168
            +  L++         +  P   L + L  L L+ N L  D     L + T L  L L N
Sbjct: 197 KLTNLESLIATNNQISDITPLGILTN-LDELSLNGNQLK-DIGT--LASLTNLTDLDLAN 252

Query: 169 NSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSI 228
           N  +    L       L  L + +N  +   P      L  L  +++  N+ E    S I
Sbjct: 253 NQISNLAPLSGLTK--LTELKLGANQISNISPLAG---LTALTNLELNENQLED--ISPI 305

Query: 229 GDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLD 288
            ++K LT+L L  NN S       +    L  L   +N   D       NLT + +L   
Sbjct: 306 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAG 361

Query: 289 NNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQ 348
           +N+ S       L   ++ +L +++   +    ++ AN S    V  ++   +    P  
Sbjct: 362 HNQISDLTPLANLT--RITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI---APAT 416

Query: 349 LLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIP 393
           + + GS     ++ N  S     S++ S  V +       SGT+ 
Sbjct: 417 ISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  105 bits (263), Expect = 1e-24
 Identities = 85/433 (19%), Positives = 152/433 (35%), Gaps = 59/433 (13%)

Query: 7   GLHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQ 66
           G+  L NL  ++ S N +                       +  L N+T+L  +  + NQ
Sbjct: 63  GVEYLNNLTQINFSNNQLTD---------------------ITPLKNLTKLVDILMNNNQ 101

Query: 67  LSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENF 126
           ++   P  + NL ++  L L N+      P+ +L N   L  L LS  +N +  +   + 
Sbjct: 102 IADITP--LANLTNLTGLTLFNNQITDIDPLKNLTN---LNRLELS--SNTISDISALSG 154

Query: 127 LPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLH 186
           L +      L+ L    N +    P   L N T LE L +++N  +    L    +  L 
Sbjct: 155 LTS------LQQLSFG-NQVTDLKP---LANLTTLERLDISSNKVSDISVLAKLTN--LE 202

Query: 187 HLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSG 246
            L  ++N  +   P      L  L  + +  N+ +     ++  +  LT L L+ N  S 
Sbjct: 203 SLIATNNQISDITPLGI---LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 257

Query: 247 ELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQL 306
                 +G   L  L    N   +        LT L  L L+ N+         LK   L
Sbjct: 258 LAP--LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPISNLK--NL 311

Query: 307 KELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLS 366
             L +  N +S   P  +++ +  L+ L    N +     +  L   ++  LS   N +S
Sbjct: 312 TYLTLYFNNISDISP--VSSLTK-LQRLFFYNNKVSDVSSLANLT--NINWLSAGHNQIS 366

Query: 367 GFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNL 426
              T   +L+ +  L +     +    N     S   T+           +  I++  + 
Sbjct: 367 DL-TPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPAT--ISDGGSY 423

Query: 427 RVLLLRGNYLEGP 439
               +  N     
Sbjct: 424 TEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 31/198 (15%), Positives = 73/198 (36%), Gaps = 20/198 (10%)

Query: 7   GLHKLKNLEALDLSFNNINGTVESQES---FELNLAKNNIGGHLLDCLNNMTRLKVLDTS 63
            L  L  L  L+L+ N +              L L  NNI    +  ++++T+L+ L   
Sbjct: 282 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFY 339

Query: 64  FNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKT 123
            N++S    S + NL ++ +L   ++      P+++L   +++  L L+   +       
Sbjct: 340 NNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANL---TRITQLGLN---DQAWTNAP 391

Query: 124 ENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHD 183
            N+        ++   +   N          + +        +T N  +   ++ ++   
Sbjct: 392 VNYKA------NVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYT-FS 444

Query: 184 FLHHLDVSSNNFTGKLPQ 201
               +   +  F+G + Q
Sbjct: 445 QPVTIGKGTTTFSGTVTQ 462

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  116 bits (291), Expect = 2e-28
 Identities = 76/409 (18%), Positives = 138/409 (33%), Gaps = 33/409 (8%)

Query: 49  DCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKV 108
           +   N  R K+   + + L  +L S+  +  +V+ LDLS +        + LA  +KL++
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 109 LRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTN 168
           L LS   +N+L           +    L+ LDL++N +        L     +E L   N
Sbjct: 63  LNLS---SNVLYE-----TLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAAN 108

Query: 169 NSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEG-NLPSS 227
           N+ +   ++  S+     ++ +++N  T  L         ++ Y+D+  N  +  N    
Sbjct: 109 NNIS---RVSCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 228 IGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYL 287
                TL  L+L  N        +      L  LD S N     + P++ +   + ++ L
Sbjct: 165 AASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISL 221

Query: 288 DNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPM 347
            NNK    IE  L  S  L+  D+  N            FS    V  ++K  +K     
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF--FSKNQRVQTVAKQTVKKLTGQ 278

Query: 348 QLLNHGSLQLLSVSENCLSGFMTSSFS------LSSLVHLYVQRNDLSGTIPNALFRSSK 401
                    L      C                      L  Q ++    +       ++
Sbjct: 279 NEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETER-LECERENQAR 337

Query: 402 LMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRL 450
              +D     +  +I            L  +   L+  +SN       L
Sbjct: 338 QREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAEL 386

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  108 bits (270), Expect = 1e-25
 Identities = 59/407 (14%), Positives = 129/407 (31%), Gaps = 31/407 (7%)

Query: 70  SLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPT 129
           ++  +  N    +   +++S  +     S   +   +K L LS   N + Q+   +  P 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLS--GNPLSQISAADLAPF 57

Query: 130 FQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLD 189
                 L+ L+LS N L        L++ + L  L L NN     L  P      +  L 
Sbjct: 58  ----TKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVGPS-----IETLH 105

Query: 190 VSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSG-EL 248
            ++NN + ++        Q    I +ANN+         G    + +L L  N       
Sbjct: 106 AANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 249 STLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKE 308
           + L     +L  L+  +N  +D      +   +L  L L +NK +  +      +  +  
Sbjct: 162 AELAASSDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTW 218

Query: 309 LDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGF 368
           + + NN L   I   +    + LE   +  N              + ++ +V++  +   
Sbjct: 219 ISLRNNKLV-LIEKALRFSQN-LEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKL 275

Query: 369 MTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINES---- 423
              +    +     +               R   L   +       G  ++++       
Sbjct: 276 TGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQ 335

Query: 424 SNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
           +  R +          I     + +    ++     ++  + +    
Sbjct: 336 ARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRA 382

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 87.2 bits (216), Expect = 1e-18
 Identities = 62/405 (15%), Positives = 115/405 (28%), Gaps = 38/405 (9%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQL 67
           L  L  L  LDL+ N +   +       L+ A NNI              K +  + N++
Sbjct: 76  LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQG---KKNIYLANNKI 132

Query: 68  SGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFL 127
           +          + V+YLDL  +  +        A+   L+ L L    N +  +K +   
Sbjct: 133 TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ--YNFIYDVKGQVVF 190

Query: 128 PTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHH 187
                   LK LDLS N LA   P    Q+   +  + L NN     ++        L H
Sbjct: 191 AK------LKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241

Query: 188 LDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGE 247
            D+  N F     +D     Q++  +       +     +  +    T  H         
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVA--KQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299

Query: 248 LSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLK 307
            +      ++L                          L    ++   ++E       + +
Sbjct: 300 PAPFADRLIAL-------------------KRKEHALLSGQGSETE-RLECERENQARQR 339

Query: 308 ELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSG 367
           E+D         +   +         L   K  L   +      H  L            
Sbjct: 340 EIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE 398

Query: 368 FMTSSFSLSSLVHLYVQRNDLS-GTIPNALFRSSKLMTLDLRDNG 411
              ++   S L  L           +     +++ +   D+  + 
Sbjct: 399 LQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHK 443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  112 bits (283), Expect = 4e-27
 Identities = 60/338 (17%), Positives = 118/338 (34%), Gaps = 39/338 (11%)

Query: 55  TRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSR 114
           T  ++LD   N++         +   +E L+L+ +         +  N   L+ L L   
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLR-- 88

Query: 115 NNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGN 174
           +N +  +        F    +L  LD+S N +      ++ Q+   L+ L + +N     
Sbjct: 89  SNRLKLIPLG----VFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-- 141

Query: 175 LQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTL 234
                          +S   F+G         L  L  + +           ++  +  L
Sbjct: 142 --------------YISHRAFSG---------LNSLEQLTLEKCNLTSIPTEALSHLHGL 178

Query: 235 TFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSG 294
             L L   N +      F     L  L+ SH  + D + P  +    L  L + +   + 
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT- 237

Query: 295 KIEDGLLKS-NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNH- 352
            +    ++    L+ L++S N +S      +      L+ + +    L   +        
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR-LQEIQLVGGQLA-VVEPYAFRGL 295

Query: 353 GSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLS 389
             L++L+VS N L+    S F S+ +L  L +  N L+
Sbjct: 296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  103 bits (258), Expect = 6e-24
 Identities = 56/280 (20%), Positives = 98/280 (35%), Gaps = 16/280 (5%)

Query: 187 HLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSG 246
            +      F   +P+    I  +   +D+  NR +            L  L L++N  S 
Sbjct: 15  AVLCHRKRFV-AVPEG---IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70

Query: 247 ELSTLFTGCVSLWFLDRSHNNF---HDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKS 303
                F    +L  L    N        +F     L+ L  L +  NK    + D + + 
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT---GLSNLTKLDISENKIV-ILLDYMFQD 126

Query: 304 -NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNH-GSLQLLSVS 361
              LK L++ +N L        +  +S LE L + K  L  +IP + L+H   L +L + 
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNS-LEQLTLEKCNLT-SIPTEALSHLHGLIVLRLR 184

Query: 362 ENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQI 420
              ++     SF  L  L  L +       T+         L +L +     + +    +
Sbjct: 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV 244

Query: 421 NESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRI 460
                LR L L  N +     +   +L RL  + L   ++
Sbjct: 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 6/192 (3%)

Query: 280 TRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKN 339
           T    L L  N+     +D       L+EL+++ N++S   P    N  + L  L +  N
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN-LRTLGLRSN 90

Query: 340 FLKGNIPMQLLNH-GSLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALF 397
            LK  IP+ +     +L  L +SEN +   +   F  L +L  L V  NDL   I +  F
Sbjct: 91  RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAF 148

Query: 398 RS-SKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLS 456
              + L  L L     + I ++ ++    L VL LR   +       F +L RL V+++S
Sbjct: 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208

Query: 457 HNRINGSIPSCF 468
           H     ++    
Sbjct: 209 HWPYLDTMTPNC 220

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 63.2 bits (154), Expect = 7e-11
 Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 4/167 (2%)

Query: 306 LKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCL 365
            + LD+  N +   +         +LE L +++N +    P    N  +L+ L +  N L
Sbjct: 34  TRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 366 SGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRS-SKLMTLDLRDNGFSGIISDQINES 423
                  F+ LS+L  L +  N +   + + +F+    L +L++ DN    I     +  
Sbjct: 93  KLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151

Query: 424 SNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
           ++L  L L    L    +     L  L V+ L H  IN      F  
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR 198

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 12/144 (8%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLL-----DCLNNMTRLKVLDT 62
             +L  L+ L++S      T+     + LNL   +I    L       + ++  L+ L+ 
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL 255

Query: 63  SFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLK 122
           S+N +S    S++  L  ++ + L            +    + L+VL +S    N L   
Sbjct: 256 SYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVS---GNQLTTL 311

Query: 123 TENFLPTFQLKHDLKYLDLSHNNL 146
            E+    F    +L+ L L  N L
Sbjct: 312 EES---VFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 24/95 (25%), Positives = 38/95 (40%)

Query: 376 SSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNY 435
           +    L + +N +     +       L  L+L +N  S +     N   NLR L LR N 
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 436 LEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
           L+      F  L  L  +D+S N+I   +   F +
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  103 bits (260), Expect = 1e-24
 Identities = 69/363 (19%), Positives = 131/363 (36%), Gaps = 38/363 (10%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESF----ELNLAKNNIGGHLLDCLNNMTRLKVLDTS 63
              L       L   ++   V +QE      +L +A   +    +  +  +T L+ L+ +
Sbjct: 18  DADLAEGIRAVLQKASVTD-VVTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLN 74

Query: 64  FNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKT 123
            NQ++   P  + NL  +  L +  +       IS+L N + L+ L L+    + +    
Sbjct: 75  GNQITDISP--LSNLVKLTNLYIGTNKITD---ISALQNLTNLRELYLN---EDNI---- 122

Query: 124 ENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHD 183
            + +        +  L+L  N+   D     L N T L  L +T +       + +    
Sbjct: 123 -SDISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTPIANLTD- 178

Query: 184 FLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNN 243
            L+ L ++ N      P      L  L Y     N+      + + +M  L  L +  N 
Sbjct: 179 -LYSLSLNYNQIEDISPLAS---LTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNK 232

Query: 244 FSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKS 303
            +    +       L +L+   N   D       +LT+L  L + +N+ S       L  
Sbjct: 233 ITD--LSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISVLNNLS- 287

Query: 304 NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSEN 363
            QL  L ++NN L       I   ++ L  L +S+N +    P+  L+   +     +  
Sbjct: 288 -QLNSLFLNNNQLGNEDMEVIGGLTN-LTTLFLSQNHITDIRPLASLS--KMDSADFANQ 343

Query: 364 CLS 366
            + 
Sbjct: 344 VIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  101 bits (254), Expect = 7e-24
 Identities = 77/378 (20%), Positives = 136/378 (35%), Gaps = 38/378 (10%)

Query: 84  LDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSH 143
           L    +     FP + LA         L     ++  + T+  L +      +  L ++ 
Sbjct: 5   LATLPAPINQIFPDADLAE---GIRAVLQ--KASVTDVVTQEELES------ITKLVVAG 53

Query: 144 NNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDK 203
             +A       ++  T LE L L  N  T    L +     L +L + +N  T       
Sbjct: 54  EKVA-SIQG--IEYLTNLEYLNLNGNQITDISPLSNLVK--LTNLYIGTNKITDISALQN 108

Query: 204 GIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDR 263
              L  L  + +  +       S + ++  +  L+L  N+   +LS L      L +L  
Sbjct: 109 ---LTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSPLS-NMTGLNYLTV 162

Query: 264 SHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHW 323
           + +   D       NLT L+ L L+ N+         L    L       N ++   P  
Sbjct: 163 TESKVKD--VTPIANLTDLYSLSLNYNQIEDISPLASLT--SLHYFTAYVNQITDITP-- 216

Query: 324 IANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFS-LSSLVHLY 382
           +AN +  L  L +  N +    P+  L+   L  L +  N +S    ++   L+ L  L 
Sbjct: 217 VANMTR-LNSLKIGNNKITDLSPLANLS--QLTWLEIGTNQISDI--NAVKDLTKLKMLN 271

Query: 383 VQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISN 442
           V  N +S    + L   S+L +L L +N       + I   +NL  L L  N++      
Sbjct: 272 VGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP- 328

Query: 443 QFCQLRRLGVMDLSHNRI 460
               L ++   D ++  I
Sbjct: 329 -LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  100 bits (252), Expect = 1e-23
 Identities = 71/340 (20%), Positives = 131/340 (38%), Gaps = 36/340 (10%)

Query: 7   GLHKLKNLEALDLSFNNINGTVESQESF----ELNLAKNNIGGHLLDCLNNMTRLKVLDT 62
              +L+++  L ++   +  +++  E       LNL  N I    +  L+N+ +L  L  
Sbjct: 39  TQEELESITKLVVAGEKVA-SIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYI 95

Query: 63  SFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLK 122
             N+++    S + NL ++  L L+         IS LAN +K+  L L     N     
Sbjct: 96  GTNKITD--ISALQNLTNLRELYLNEDNISD---ISPLANLTKMYSLNLG---ANHNLSD 147

Query: 123 TENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKH 182
                    +   L YL ++ + +    P   + N T L  L L  N       L     
Sbjct: 148 LSPL---SNMTG-LNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQIEDISPLASLTS 200

Query: 183 DFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKN 242
             LH+     N  T   P      + +L  + + NN+      S + ++  LT+L +  N
Sbjct: 201 --LHYFTAYVNQITDITPVAN---MTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTN 253

Query: 243 NFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLK 302
             S  ++        L  L+   N   D       NL++L  L+L+NN+   +  + +  
Sbjct: 254 QISD-INA-VKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309

Query: 303 SNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLK 342
              L  L +S N ++   P  +A+ S  ++    +   +K
Sbjct: 310 LTNLTTLFLSQNHITDIRP--LASLSK-MDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 97.2 bits (243), Expect = 2e-22
 Identities = 77/380 (20%), Positives = 142/380 (37%), Gaps = 39/380 (10%)

Query: 14  LEALDLSFNNINGTVESQESF----ELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSG 69
              L      IN  +             L K ++    +     +  +  L  +  +++ 
Sbjct: 2   AATLATLPAPIN-QIFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA- 57

Query: 70  SLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPT 129
           S+   I  L ++EYL+L+ +       IS L+N  KL  L +     N +       +  
Sbjct: 58  SIQG-IEYLTNLEYLNLNGNQITD---ISPLSNLVKLTNLYIG---TNKI-----TDISA 105

Query: 130 FQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLD 189
            Q   +L+ L L+ +N++   P   L N TK+  L L  N    +L  P S    L++L 
Sbjct: 106 LQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLT 161

Query: 190 VSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELS 249
           V+ +      P      L  L  + +  N+ E    S +  + +L +     N  +    
Sbjct: 162 VTESKVKDVTPIAN---LTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITD--I 214

Query: 250 TLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKEL 309
           T       L  L   +N   D       NL++L +L +  N+ S    + +    +LK L
Sbjct: 215 TPVANMTRLNSLKIGNNKITDLSPLA--NLSQLTWLEIGTNQISD--INAVKDLTKLKML 270

Query: 310 DMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFM 369
           ++ +N +S      + N S  L  L ++ N L       +    +L  L +S+N ++   
Sbjct: 271 NVGSNQISDISV--LNNLSQ-LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327

Query: 370 TSSFSLSSLVHLYVQRNDLS 389
             + SLS +         + 
Sbjct: 328 PLA-SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 91.4 bits (228), Expect = 1e-20
 Identities = 61/335 (18%), Positives = 124/335 (37%), Gaps = 27/335 (8%)

Query: 136 LKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNF 195
              L      +   FP     +  +     L   S T  +     +   +  L V+    
Sbjct: 2   AATLATLPAPINQIFP---DADLAEGIRAVLQKASVTDVVTQEELES--ITKLVVAGEKV 56

Query: 196 TGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGC 255
              +   +   L  L Y+++  N+      S + ++  LT L++  N  +    +     
Sbjct: 57  A-SIQGIEY--LTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKITD--ISALQNL 109

Query: 256 VSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNM 315
            +L  L  + +N  D       NLT+++ L L  N     +   L     L  L ++ + 
Sbjct: 110 TNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESK 166

Query: 316 LSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSL 375
           +    P  IAN +  L  L ++ N ++   P+  L   SL   +   N ++   T   ++
Sbjct: 167 VKDVTP--IANLTD-LYSLSLNYNQIEDISPLASLT--SLHYFTAYVNQITDI-TPVANM 220

Query: 376 SSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNY 435
           + L  L +  N ++   P  L   S+L  L++  N  S I  + + + + L++L +  N 
Sbjct: 221 TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQ 276

Query: 436 LEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
           +          L +L  + L++N++          
Sbjct: 277 ISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGG 309

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.8 bits (151), Expect = 1e-10
 Identities = 47/218 (21%), Positives = 81/218 (37%), Gaps = 26/218 (11%)

Query: 6   AGLHKLKNLEALDLSFNNINGTVESQESF----ELNLAKNNIGGHLLDCLNNMTRLKVLD 61
           + L  +  L  L ++ + +   V    +      L+L  N I    +  L ++T L    
Sbjct: 149 SPLSNMTGLNYLTVTESKVKD-VTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFT 205

Query: 62  TSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQL 121
              NQ++    + + N+  +  L + N+       +S LAN S+L  L +     N +  
Sbjct: 206 AYVNQITDI--TPVANMTRLNSLKIGNNKITD---LSPLANLSQLTWLEIG---TNQIS- 256

Query: 122 KTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSK 181
                +   +    LK L++  N ++ D     L N ++L  L L NN            
Sbjct: 257 ----DINAVKDLTKLKMLNVGSNQIS-DISV--LNNLSQLNSLFLNNNQLGNEDMEVIGG 309

Query: 182 HDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNR 219
              L  L +S N+ T   P      L K+   D AN  
Sbjct: 310 LTNLTTLFLSQNHITDIRPLAS---LSKMDSADFANQV 344

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  101 bits (254), Expect = 9e-24
 Identities = 71/409 (17%), Positives = 136/409 (33%), Gaps = 52/409 (12%)

Query: 51  LNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLR 110
           L        +               + L + + +   NS      P + L +  ++++L 
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 111 LSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNS 170
           L+  +  + ++ T      F   H ++ L +  N +    P  + QN   L VL L  N 
Sbjct: 76  LN--DLQIEEIDTY----AFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND 128

Query: 171 FTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGD 230
            +                 +    F             KL  + M+NN  E     +   
Sbjct: 129 LS----------------SLPRGIFHN---------TPKLTTLSMSNNNLERIEDDTFQA 163

Query: 231 MKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNN 290
             +L  L LS N  +    +L     SL+  + S+N          + +  L      +N
Sbjct: 164 TTSLQNLQLSSNRLTHVDLSLIP---SLFHANVSYNLLST--LAIPIAVEEL---DASHN 215

Query: 291 KFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLL 350
             +  +   +     L  L + +N L+     W+ N+   L  + +S N L+  +    +
Sbjct: 216 SIN-VVRGPVNVE--LTILKLQHNNLTD--TAWLLNYPG-LVEVDLSYNELEKIMYHPFV 269

Query: 351 NHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDN 410
               L+ L +S N L         + +L  L +  N L   +     +  +L  L L  N
Sbjct: 270 KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 328

Query: 411 GFSGIISDQINESSNLRVLLLRGNYLEG-PISNQFCQLRRLGVMDLSHN 458
               +   +++    L+ L L  N  +   +   F  + R  V D   +
Sbjct: 329 SIVTL---KLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  101 bits (253), Expect = 1e-23
 Identities = 77/398 (19%), Positives = 149/398 (37%), Gaps = 28/398 (7%)

Query: 13  NLEALDLSFNNINGTVESQESF-ELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSL 71
           N++     +  I+  ++    F ++++       +       +   K++    + +    
Sbjct: 2   NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP 61

Query: 72  PSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQ 131
            +++ +   VE L+L++   E      + A    ++ L +    N +  L        FQ
Sbjct: 62  AALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMG--FNAIRYLPPH----VFQ 114

Query: 132 LKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVS 191
               L  L L  N+L+   P  I  N  KL  L ++NN+              L +L +S
Sbjct: 115 NVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173

Query: 192 SNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTL 251
           SN  T  +      ++  L + +++ N       S++     +  L  S N+ +     +
Sbjct: 174 SNRLT-HVDLS---LIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPV 224

Query: 252 FTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDM 311
                 L  L   HNN  D      +N   L  + L  N+    +    +K  +L+ L +
Sbjct: 225 NV---ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279

Query: 312 SNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTS 371
           SNN L   +  +     + L+VL +S N L  ++         L+ L +  N +     S
Sbjct: 280 SNNRLV-ALNLYGQPIPT-LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLS 336

Query: 372 SFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRD 409
           +    +L +L +  ND       ALFR+     +D  D
Sbjct: 337 TH--HTLKNLTLSHNDWDCNSLRALFRNVARPAVDDAD 372

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 97.4 bits (243), Expect = 3e-22
 Identities = 66/369 (17%), Positives = 127/369 (34%), Gaps = 39/369 (10%)

Query: 2   LFLGAGLHKLKNLEALDLSFNNINGTVESQESF-------ELNLAKNNIGGHLLDCLNNM 54
           ++ G     L N + +    + +                  LNL    I           
Sbjct: 35  VYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA 92

Query: 55  TRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSR 114
             ++ L   FN +    P V  N+  +  L L  +    + P     N  KL  L +S  
Sbjct: 93  HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMS-- 149

Query: 115 NNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGN 174
           NNN+ +++ +    TFQ    L+ L LS N L       ++ +   L    ++ N  +  
Sbjct: 150 NNNLERIEDD----TFQATTSLQNLQLSSNRLT-HVDLSLIPS---LFHANVSYNLLS-- 199

Query: 175 LQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTL 234
             L       +  LD S N+    +      +  +L  + + +N       + + +   L
Sbjct: 200 -TLA--IPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGL 250

Query: 235 TFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSG 294
             + LS N     +   F     L  L  S+N     +      +  L  L L +N    
Sbjct: 251 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL- 308

Query: 295 KIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGS 354
            +E    + ++L+ L + +N +   +   ++   + L+ L +S N    N    L  +  
Sbjct: 309 HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHT-LKNLTLSHNDWDCNSLRALFRN-- 362

Query: 355 LQLLSVSEN 363
           +   +V + 
Sbjct: 363 VARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.0 bits (229), Expect = 2e-20
 Identities = 61/310 (19%), Positives = 113/310 (36%), Gaps = 23/310 (7%)

Query: 155 LQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYID 214
           LQ +     + +   +            +    +   ++    KLP       +++  ++
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 215 MANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNN---FHDQ 271
           + + + E     +     T+  L++  N        +F     L  L    N+       
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 135

Query: 272 IFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSN-QLKELDMSNNMLSGHIPHWIANFSSY 330
           IF    N  +L  L + NN    +IED   ++   L+ L +S+N L+ H+   ++   S 
Sbjct: 136 IF---HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPS- 187

Query: 331 LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSG 390
           L    +S N L       L    +++ L  S N ++           L  L +Q N+L  
Sbjct: 188 LFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNV--ELTILKLQHNNL-- 238

Query: 391 TIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRL 450
           T    L     L+ +DL  N    I+     +   L  L +  N L   ++     +  L
Sbjct: 239 TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTL 297

Query: 451 GVMDLSHNRI 460
            V+DLSHN +
Sbjct: 298 KVLDLSHNHL 307

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 90.1 bits (224), Expect = 7e-20
 Identities = 67/354 (18%), Positives = 129/354 (36%), Gaps = 48/354 (13%)

Query: 111 LSSRNNNMLQLKTENFLPTFQLK-HDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNN 169
               + ++     + +     +  ++ K +   ++ +    PA +L +  ++E+L L + 
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDL 79

Query: 170 SFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIG 229
                              ++ +  F              +  + M  N      P    
Sbjct: 80  QIE----------------EIDTYAFAY---------AHTIQKLYMGFNAIRYLPPHVFQ 114

Query: 230 DMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNF---HDQIFPKYMNLTRLWFLY 286
           ++  LT L L +N+ S     +F     L  L  S+NN     D  F      T L  L 
Sbjct: 115 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF---QATTSLQNLQ 171

Query: 287 LDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIP 346
           L +N+ +  ++  L+ S  L   ++S N+LS  +   IA     +E L  S N +   + 
Sbjct: 172 LSSNRLT-HVDLSLIPS--LFHANVSYNLLS-TLAIPIA-----VEELDASHNSIN-VVR 221

Query: 347 MQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLD 406
             +     L +L +  N L+       +   LV + +  N+L   + +   +  +L  L 
Sbjct: 222 GPVNV--ELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278

Query: 407 LRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRI 460
           + +N     ++        L+VL L  N+L   +     Q  RL  + L HN I
Sbjct: 279 ISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 83.6 bits (207), Expect = 1e-17
 Identities = 56/288 (19%), Positives = 109/288 (37%), Gaps = 25/288 (8%)

Query: 187 HLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSG 246
           H+D+ + +          I L     +   N+       + +   + +  L+L+      
Sbjct: 27  HIDMQTQDVYFGFED---ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE 83

Query: 247 ELSTLFTGCVSLWFLDRSHNN---FHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKS 303
             +  F    ++  L    N        +F    N+  L  L L+ N  S  +  G+  +
Sbjct: 84  IDTYAFAYAHTIQKLYMGFNAIRYLPPHVF---QNVPLLTVLVLERNDLS-SLPRGIFHN 139

Query: 304 N-QLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSE 362
             +L  L MSNN L   I       ++ L+ L +S N L  ++ + L+   SL   +VS 
Sbjct: 140 TPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIP--SLFHANVSY 195

Query: 363 NCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINE 422
           N LS          ++  L    N ++  +   +    +L  L L+ N  +      +  
Sbjct: 196 NLLSTL----AIPIAVEELDASHNSIN-VVRGPVN--VELTILKLQHNNLTDT--AWLLN 246

Query: 423 SSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
              L  + L  N LE  + + F +++RL  + +S+NR+  ++      
Sbjct: 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQP 293

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 29/177 (16%), Positives = 68/177 (38%), Gaps = 4/177 (2%)

Query: 296 IEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSL 355
           I+  L       ++ +       +        ++  +++    + ++      L +   +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNN-QKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 356 QLLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRS-SKLMTLDLRDNGFS 413
           +LL++++  +    T +F+   ++  LY+  N +   +P  +F++   L  L L  N  S
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 130

Query: 414 GIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
            +     + +  L  L +  N LE    + F     L  + LS NR+     S   +
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS 187

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  100 bits (250), Expect = 6e-23
 Identities = 83/419 (19%), Positives = 146/419 (34%), Gaps = 23/419 (5%)

Query: 9   HKLKNLEALDLSFNNINGTVESQESF----ELNLAKNNIGG-HLLDCLNNMTRLKVLDTS 63
              + LE LDLS N +     S         L+L+ N      +     NM++LK L  S
Sbjct: 66  KFNQELEYLDLSHNKL--VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLS 123

Query: 64  FNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLAN--HSKLKVLRLSSRNNNMLQL 121
              L  S    I +L   + L +    +        L +     L ++  +++  + +  
Sbjct: 124 TTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILD 183

Query: 122 KTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQN----NTKLEVLCLTNNSFTGNLQL 177
            +   +   +L +    L+ +  +      A +  N    N  L  +  T NSF   LQL
Sbjct: 184 VSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243

Query: 178 PHSKHDFLHHLDVSSNNFTGKLPQDKGII----LQKLLYIDMANNRFEGNLPSSIGDMKT 233
                  + +  +S+    G+L           L+ L    + ++ F             
Sbjct: 244 VWHTT--VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSN 301

Query: 234 LTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFS 293
           +   + + +          +       LD S+N   D +F    +LT L  L L  N+  
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

Query: 294 --GKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLN 351
              KI +   +   L++LD+S N +S        +++  L  L MS N L   I   L  
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP 421

Query: 352 HGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDN 410
              +++L +  N +         L +L  L V  N L         R + L  + L  N
Sbjct: 422 --RIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 84.9 bits (210), Expect = 8e-18
 Identities = 75/446 (16%), Positives = 149/446 (33%), Gaps = 61/446 (13%)

Query: 35  ELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGT 94
            LN+++N I       + ++++L++L  S N++     SV      +EYLDLS++     
Sbjct: 25  ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN----- 79

Query: 95  FPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWI 154
                                    +L   +  PT  LKH    LDLS N          
Sbjct: 80  -------------------------KLVKISCHPTVNLKH----LDLSFNAFDALPICKE 110

Query: 155 LQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYID 214
             N ++L+ L L+        +        L+   V          ++    LQ      
Sbjct: 111 FGNMSQLKFLGLSTTHLE---KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTES 167

Query: 215 MANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFP 274
           +            I D+   T  +L  +N                 L+ +  ++   I  
Sbjct: 168 LHIVFPTNKEFHFILDVSVKTVANLELSNIK-------------CVLEDNKCSYFLSILA 214

Query: 275 KYMNLTRLWFLYLDNNKFSGKIEDGLLK---SNQLKELDMSNNMLSGHIPHWIANFSS-- 329
           K     +L  L L+N + +      +L+      +    +SN  L G +     ++S   
Sbjct: 215 KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTS 274

Query: 330 --YLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQRN 386
              L +  +  +              ++ + + + +          S +S  +HL    N
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN 334

Query: 387 DLSGTIPNALFRSSKLMTLDLRDNGFSGI--ISDQINESSNLRVLLLRGNYLE-GPISNQ 443
            L+ T+       ++L TL L+ N    +  I++   +  +L+ L +  N +        
Sbjct: 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394

Query: 444 FCQLRRLGVMDLSHNRINGSIPSCFT 469
               + L  +++S N +  +I  C  
Sbjct: 395 CSWTKSLLSLNMSSNILTDTIFRCLP 420

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 78.4 bits (193), Expect = 9e-16
 Identities = 80/445 (17%), Positives = 152/445 (34%), Gaps = 60/445 (13%)

Query: 55  TRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSR 114
            +  +L+ S N +S    S I++L+ +  L +S++  +    IS    + +L+ L LS  
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLS-- 77

Query: 115 NNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGN 174
            +N  +L   +  PT  LKH    LDLS N            N ++L+ L L+       
Sbjct: 78  -HN--KLVKISCHPTVNLKH----LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE-- 128

Query: 175 LQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTL 234
            +        L+   V          ++    LQ      +            I D+   
Sbjct: 129 -KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187

Query: 235 TFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSG 294
           T  +L  +N                 L+ +  ++   I  K     +L  L L+N + + 
Sbjct: 188 TVANLELSNIK-------------CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234

Query: 295 KIEDGLLK---SNQLKELDMSNNMLSGHIPHWIANFSS----YLEVLLMSKNFLKGNIPM 347
                +L+      +    +SN  L G +     ++S      L +  +  +        
Sbjct: 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294

Query: 348 QLLNHGSLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRSSKLMTLD 406
                 ++ + + + +          S +S  +HL    N L+ T+       ++L TL 
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354

Query: 407 LRDNGFSGI--ISDQINESSNLRVLLLRGNYLEGPISNQFCQ------------------ 446
           L+ N    +  I++   +  +L+ L +  N +        C                   
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414

Query: 447 -----LRRLGVMDLSHNRINGSIPS 466
                  R+ V+DL  N+I  SIP 
Sbjct: 415 IFRCLPPRIKVLDLHSNKIK-SIPK 438

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 57.6 bits (139), Expect = 5e-09
 Identities = 50/291 (17%), Positives = 91/291 (31%), Gaps = 39/291 (13%)

Query: 34  FELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVI-----VNLASVEYLDLSN 88
            +  L  N     L       T  K+ + + N +  +  S I     V   +V Y  +SN
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256

Query: 89  SYFEGTFPISSLA-NHSKLKVLRLSSRNNNMLQLKTEN---------------------F 126
              +G         + + LK L +    +++                             
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316

Query: 127 LPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDF-- 184
           +          +LD S+N L  D       + T+LE L L  N      +L         
Sbjct: 317 MLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLK---ELSKIAEMTTQ 372

Query: 185 ---LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSK 241
              L  LD+S N+ +    +      + LL ++M++N     +   +     +  L L  
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHS 430

Query: 242 NNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKF 292
           N     +        +L  L+ + N         +  LT L  ++L  N +
Sbjct: 431 NKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 29/187 (15%), Positives = 61/187 (32%), Gaps = 27/187 (14%)

Query: 9   HKLKNLEALDLSFNNINGTVESQESF-----ELNLAKNNIGGHLLDCLNNMTRLKVLDTS 63
               N+   + + +          S       L+ + N +   + +   ++T L+ L   
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356

Query: 64  FNQLS--GSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQL 121
            NQL     +  +   + S++ LD+S +           +    L  L +S  +N +   
Sbjct: 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS--SNILTDT 414

Query: 122 KTENFLPTFQLKH-----------------DLKYLDLSHNNLAGDFPAWILQNNTKLEVL 164
                 P  ++                    L+ L+++ N L    P  I    T L+ +
Sbjct: 415 IFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKI 473

Query: 165 CLTNNSF 171
            L  N +
Sbjct: 474 WLHTNPW 480

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 96.6 bits (241), Expect = 2e-22
 Identities = 55/345 (15%), Positives = 119/345 (34%), Gaps = 30/345 (8%)

Query: 70  SLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPT 129
           ++  +  N    +   +++S  +     S   +   +K L LS   N + Q+   +  P 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLS--GNPLSQISAADLAPF 57

Query: 130 FQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLD 189
                 L+ L+LS N L        L++ + L  L L NN      +L       +  L 
Sbjct: 58  ----TKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQ---ELLVGPS--IETLH 105

Query: 190 VSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSG-EL 248
            ++NN + ++   +G   + +    +ANN+         G    + +L L  N       
Sbjct: 106 AANNNIS-RVSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 249 STLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKE 308
           + L     +L  L+  +N  +D      +   +L  L L +NK +  +      +  +  
Sbjct: 162 AELAASSDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTW 218

Query: 309 LDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGF 368
           + + NN L   I   +    + LE   +  N       ++     + ++ +V++  +   
Sbjct: 219 ISLRNNKLV-LIEKALRFSQN-LEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKL 275

Query: 369 MTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFS 413
              +    ++  L          +P           + L  +   
Sbjct: 276 TGQNEEECTVPTLGHYGAYCCEDLPAPFA----DRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 89.3 bits (222), Expect = 6e-20
 Identities = 48/257 (18%), Positives = 92/257 (35%), Gaps = 17/257 (6%)

Query: 207 LQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHN 266
             +     + ++  +  L S       +  L LS N  S   +        L  L+ S N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 267 NFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIAN 326
             ++       +L+ L  L L+NN         LL    ++ L  +NN +S  +    + 
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVS--CSR 118

Query: 327 FSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF--SLSSLVHLYVQ 384
                + + ++ N +     +       +Q L +  N +     +    S  +L HL +Q
Sbjct: 119 GQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 385 RNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQF 444
            N +   +   +  +  L TLDL  N  +  +  +   ++ +  + LR N L   I    
Sbjct: 178 YNFIY-DVKGQVVFAK-LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKAL 233

Query: 445 CQLRRLGVMDLSHNRIN 461
              + L   DL  N  +
Sbjct: 234 RFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 88.9 bits (221), Expect = 1e-19
 Identities = 49/307 (15%), Positives = 107/307 (34%), Gaps = 32/307 (10%)

Query: 11  LKNLEALDLSFNNINGTVESQESF-----ELNLAKNNIGGHLLDCLNNMTRLKVLDTSFN 65
               +   ++ +++   + S         EL+L+ N +       L   T+L++L+ S N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 66  QLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTEN 125
            L  +L   + +L+++  LDL+N+Y      +  L     ++ L  +  NNN+ ++    
Sbjct: 69  VLYETLD--LESLSTLRTLDLNNNY------VQELLVGPSIETLHAA--NNNISRVSCSR 118

Query: 126 FLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDF- 184
                      K + L++N +            ++++ L L  N     +          
Sbjct: 119 G-------QGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSD 169

Query: 185 -LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNN 243
            L HL++  N     +     ++  KL  +D+++N+    +         +T++ L  N 
Sbjct: 170 TLEHLNLQYNFIY-DVK--GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225

Query: 244 FSGELSTLFTGCVSLWFLDRSHNNFHDQIFPK-YMNLTRLWFLYLDNNKFSGKIEDGLLK 302
               +        +L   D   N FH       +    R+  +     K      +    
Sbjct: 226 LV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

Query: 303 SNQLKEL 309
              L   
Sbjct: 285 VPTLGHY 291

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.0 bits (216), Expect = 4e-19
 Identities = 62/357 (17%), Positives = 119/357 (33%), Gaps = 48/357 (13%)

Query: 102 NHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKL 161
           N ++ K+ +++  ++++ Q          Q   ++K LDLS N L+    A  L   TKL
Sbjct: 8   NGNRYKIEKVT--DSSLKQALAS----LRQSAWNVKELDLSGNPLS-QISAADLAPFTKL 60

Query: 162 EVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFE 221
           E+L L++N     L L       L  LD+++N    +L          +  +  ANN   
Sbjct: 61  ELLNLSSNVLYETLDLESLST--LRTLDLNNNYVQ-ELLV-----GPSIETLHAANNNIS 112

Query: 222 GNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPK-YMNLT 280
             +  S G  +    ++L+ N  +            + +LD   N      F +   +  
Sbjct: 113 -RVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 281 RLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNF 340
            L  L L  N     ++  ++ +  LK LD+S+N L+                       
Sbjct: 170 TLEHLNLQYNFIY-DVKGQVVFAK-LKTLDLSSNKLA----------------------- 204

Query: 341 LKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSS 400
               +  +  +   +  +S+  N L     +     +L H  ++ N          F  +
Sbjct: 205 ---FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

Query: 401 KLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSH 457
                 +       +      E +   +        E   +    +L  LG     H
Sbjct: 262 -QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 84.3 bits (209), Expect = 3e-18
 Identities = 60/298 (20%), Positives = 115/298 (38%), Gaps = 15/298 (5%)

Query: 154 ILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYI 213
           I QN  + ++  +T++S    L         +  LD+S N  + ++         KL  +
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELL 63

Query: 214 DMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIF 273
           ++++N         +  + TL  L L+ N     +  L  G  S+  L  ++NN      
Sbjct: 64  NLSSNVLYE--TLDLESLSTLRTLDLNNNY----VQELLVG-PSIETLHAANNNISRVSC 116

Query: 274 PKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEV 333
            +         +YL NNK +   +      ++++ LD+  N +       +A  S  LE 
Sbjct: 117 SRGQGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 334 LLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIP 393
           L +  NF+  ++    +    L+ L +S N L+       S + +  + ++ N L   I 
Sbjct: 174 LNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIE 230

Query: 394 NALFRSSKLMTLDLRDNGFSGIISDQINESSN-LRVLLLRGNYLEGPISNQFCQLRRL 450
            AL  S  L   DLR NGF           +  ++ +  +        + + C +  L
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 81.6 bits (202), Expect = 2e-17
 Identities = 39/249 (15%), Positives = 88/249 (35%), Gaps = 17/249 (6%)

Query: 224 LPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLW 283
           +     +        ++ ++    L++L     ++  LD S N             T+L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 284 FLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKG 343
            L L +N     ++   L +  L+ LD++NN +   +          +E L  + N +  
Sbjct: 62  LLNLSSNVLYETLDLESLST--LRTLDLNNNYVQ-ELLV-----GPSIETLHAANNNIS- 112

Query: 344 NIPMQLLNHGSLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRS-SK 401
            +          + + ++ N ++          S + +L ++ N++       L  S   
Sbjct: 113 RVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 402 LMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRIN 461
           L  L+L+ N    +    +   + L+ L L  N L   +  +F     +  + L +N++ 
Sbjct: 171 LEHLNLQYNFIYDVKGQVVF--AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV 227

Query: 462 GSIPSCFTN 470
             I      
Sbjct: 228 -LIEKALRF 235

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 50/245 (20%), Positives = 82/245 (33%), Gaps = 17/245 (6%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQL 67
           L  L  L  LDL+ N +   +       L+ A NNI              K +  + N++
Sbjct: 76  LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQG---KKNIYLANNKI 132

Query: 68  SGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFL 127
           +          + V+YLDL  +  +        A+   L+ L L    N +  +K +   
Sbjct: 133 TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ--YNFIYDVKGQVVF 190

Query: 128 PTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHH 187
                   LK LDLS N LA        Q+   +  + L NN     ++        L H
Sbjct: 191 AK------LKTLDLSSNKLA-FMGPEF-QSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241

Query: 188 LDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGE 247
            D+  N F     +D     Q++  +     +    L     +  T+  L         +
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYGAYCCED 298

Query: 248 LSTLF 252
           L   F
Sbjct: 299 LPAPF 303

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 19/136 (13%), Positives = 45/136 (33%), Gaps = 11/136 (8%)

Query: 4   LGAGLHKLKNLEALDLSFNNINGTVESQESF-----ELNLAKNNIGGHLLDCLNNMTRLK 58
                     LE L+L +N I       +        L+L+ N +   +     +   + 
Sbjct: 161 FAELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVT 217

Query: 59  VLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNM 118
            +    N+L   +   +    ++E+ DL  + F         + + +++   ++ +    
Sbjct: 218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT--VAKQTVKK 274

Query: 119 LQLKTENFLPTFQLKH 134
           L  + E       L H
Sbjct: 275 LTGQNEEECTVPTLGH 290

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 96.9 bits (241), Expect = 1e-21
 Identities = 74/358 (20%), Positives = 135/358 (37%), Gaps = 27/358 (7%)

Query: 53  NMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLS 112
            +   K++    + +     +++ +   VE L+L++   E      + A    ++ L + 
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMG 107

Query: 113 SRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFT 172
              N +  L        FQ    L  L L  N+L+   P  I  N  KL  L ++NN+  
Sbjct: 108 --FNAIRYLPPH----VFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE 160

Query: 173 GNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMK 232
                       L +L +SSN  T  +      ++  L + +++ N       S++    
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLT-HVDLS---LIPSLFHANVSYNLL-----STLAIPI 211

Query: 233 TLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKF 292
            +  L  S N+ +     +      L  L   HNN  D      +N   L  + L  N+ 
Sbjct: 212 AVEELDASHNSINVVRGPVNV---ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNEL 266

Query: 293 SGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNH 352
              +    +K  +L+ L +SNN L   +  +     + L+VL +S N L  ++       
Sbjct: 267 EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPT-LKVLDLSHNHLL-HVERNQPQF 323

Query: 353 GSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDN 410
             L+ L +  N +     S+    +L +L +  ND       ALFR+     +D  D 
Sbjct: 324 DRLENLYLDHNSIVTLKLSTH--HTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQ 379

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 93.1 bits (231), Expect = 2e-20
 Identities = 76/457 (16%), Positives = 146/457 (31%), Gaps = 46/457 (10%)

Query: 2   LFLGAGLHKLKNLEALDLSFNNINGTVESQESF-------ELNLAKNNIGGHLLDCLNNM 54
           ++ G     L N + +    + +                  LNL    I           
Sbjct: 41  VYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA 98

Query: 55  TRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSR 114
             ++ L   FN +    P V  N+  +  L L  +    + P     N  KL  L +S  
Sbjct: 99  HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMS-- 155

Query: 115 NNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGN 174
           NNN+ +++ +    TFQ    L+ L LS N L       ++ +   L    ++ N  +  
Sbjct: 156 NNNLERIEDD----TFQATTSLQNLQLSSNRLT-HVDLSLIPS---LFHANVSYNLLS-- 205

Query: 175 LQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTL 234
             L       +  LD S N+    +      +  +L  + + +N       + + +   L
Sbjct: 206 -TLA--IPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGL 256

Query: 235 TFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSG 294
             + LS N     +   F     L  L  S+N     +      +  L  L L +N    
Sbjct: 257 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL- 314

Query: 295 KIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNH-G 353
            +E    + ++L+ L + +N +   +   ++   + L+ L +S N    N    L  +  
Sbjct: 315 HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHT-LKNLTLSHNDWDCNSLRALFRNVA 370

Query: 354 SLQLLSVSENCLSGF--------MTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTL 405
              +    ++C   +          S       +  Y+    +   +  A  R S   T+
Sbjct: 371 RPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTI 430

Query: 406 DLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISN 442
           +   +    I             L    N L   +  
Sbjct: 431 NSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQ 467

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 91.9 bits (228), Expect = 5e-20
 Identities = 67/356 (18%), Positives = 120/356 (33%), Gaps = 29/356 (8%)

Query: 111 LSSRNNNMLQLKTENFLPTFQLK-HDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNN 169
               + ++     + +     +  ++ K +   ++ +    PA +L +  ++E+L L + 
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDL 85

Query: 170 SFTGNLQLPH---SKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPS 226
                 ++     +    +  L +  N     LP      +  L  + +  N        
Sbjct: 86  QIE---EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRG 141

Query: 227 SIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLY 286
              +   LT L +S NN        F    SL  L  S N            +  L+   
Sbjct: 142 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL---SLIPSLFHAN 198

Query: 287 LDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIP 346
           +  N  S      L     ++ELD S+N ++  +       +  L +L +  N L  +  
Sbjct: 199 VSYNLLST-----LAIPIAVEELDASHNSIN-VVR---GPVNVELTILKLQHNNLT-DTA 248

Query: 347 MQLLNHGSLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRSSKLMTL 405
             LLN+  L  + +S N L   M   F  +  L  LY+  N L   +         L  L
Sbjct: 249 -WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVL 306

Query: 406 DLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRIN 461
           DL  N     +     +   L  L L  N +     +    L+ L    LSHN  +
Sbjct: 307 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL---TLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 88.4 bits (219), Expect = 6e-19
 Identities = 61/310 (19%), Positives = 113/310 (36%), Gaps = 23/310 (7%)

Query: 155 LQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYID 214
           LQ +     + +   +            +    +   ++    KLP       +++  ++
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 81

Query: 215 MANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFH---DQ 271
           + + + E     +     T+  L++  N        +F     L  L    N+       
Sbjct: 82  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 141

Query: 272 IFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSN-QLKELDMSNNMLSGHIPHWIANFSSY 330
           IF    N  +L  L + NN    +IED   ++   L+ L +S+N L+ H+   ++   S 
Sbjct: 142 IF---HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPS- 193

Query: 331 LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSG 390
           L    +S N L       L    +++ L  S N ++           L  L +Q N+L  
Sbjct: 194 LFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNV--ELTILKLQHNNL-- 244

Query: 391 TIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRL 450
           T    L     L+ +DL  N    I+     +   L  L +  N L   ++     +  L
Sbjct: 245 TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTL 303

Query: 451 GVMDLSHNRI 460
            V+DLSHN +
Sbjct: 304 KVLDLSHNHL 313

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 80.7 bits (199), Expect = 2e-16
 Identities = 56/288 (19%), Positives = 108/288 (37%), Gaps = 25/288 (8%)

Query: 187 HLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSG 246
           H+D+ + +          I L     +   N+       + +   + +  L+L+      
Sbjct: 33  HIDMQTQDVYFGFED---ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE 89

Query: 247 ELSTLFTGCVSLWFLDRSHNN---FHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKS 303
             +  F    ++  L    N        +F    N+  L  L L+ N  S  +  G+  +
Sbjct: 90  IDTYAFAYAHTIQKLYMGFNAIRYLPPHVF---QNVPLLTVLVLERNDLS-SLPRGIFHN 145

Query: 304 N-QLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSE 362
             +L  L MSNN L   I       ++ L+ L +S N L  ++ + L+   SL   +VS 
Sbjct: 146 TPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIP--SLFHANVSY 201

Query: 363 NCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINE 422
           N LS          ++  L    N ++  +   +     L  L L+ N  +      +  
Sbjct: 202 NLLSTL----AIPIAVEELDASHNSIN-VVRGPVNVE--LTILKLQHNNLTDT--AWLLN 252

Query: 423 SSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
              L  + L  N LE  + + F +++RL  + +S+NR+  ++      
Sbjct: 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQP 299

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.9 bits (137), Expect = 7e-09
 Identities = 35/186 (18%), Positives = 75/186 (40%), Gaps = 7/186 (3%)

Query: 278 NLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMS 337
                + +++D            +  N  K +   N+ +   +P  + +    +E+L ++
Sbjct: 25  YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLN 83

Query: 338 KNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNAL 396
              ++           ++Q L +  N +       F  +  L  L ++RNDLS ++P  +
Sbjct: 84  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGI 142

Query: 397 FRS-SKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDL 455
           F +  KL TL + +N    I  D    +++L+ L L  N L     +    L      ++
Sbjct: 143 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA---NV 199

Query: 456 SHNRIN 461
           S+N ++
Sbjct: 200 SYNLLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 15/118 (12%), Positives = 39/118 (33%), Gaps = 1/118 (0%)

Query: 345 IPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLM 403
           I   L        + +       +      +L++   +  + + +       L    ++ 
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78

Query: 404 TLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRIN 461
            L+L D     I +     +  ++ L +  N +     + F  +  L V+ L  N ++
Sbjct: 79  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 94.3 bits (235), Expect = 5e-21
 Identities = 95/482 (19%), Positives = 156/482 (32%), Gaps = 86/482 (17%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHL------LDCLNN-------- 53
              +K+      +++            +  +A + +   L      L+  N         
Sbjct: 30  AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89

Query: 54  MTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSS 113
              L+ L  S N L+  LP +  +L S+   + +        P         L+ L +S 
Sbjct: 90  PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP--------LLEYLGVS- 139

Query: 114 RNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTG 173
             NN L+      LP  Q    LK +D+ +N+L    P         LE +   NN    
Sbjct: 140 --NNQLE-----KLPELQNSSFLKIIDVDNNSLK-KLPDLP----PSLEFIAAGNNQLEE 187

Query: 174 NLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKT 233
             +L +     L  +   +N+   KLP         L  I   NN  E      + ++  
Sbjct: 188 LPELQNLPF--LTAIYADNNSLK-KLPDL----PLSLESIVAGNNILE--ELPELQNLPF 238

Query: 234 LTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYM-NLTRLWFLYLDNNKF 292
           LT ++   N     L TL     SL  L+   N   D   P+   +LT L       +  
Sbjct: 239 LTTIYADNNL----LKTLPDLPPSLEALNVRDNYLTD--LPELPQSLTFLDVSENIFSGL 292

Query: 293 S---GKIEDGLLKSNQ----------LKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKN 339
           S     +      SN+          L+EL++SNN L   +P         LE L+ S N
Sbjct: 293 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR----LERLIASFN 347

Query: 340 FLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRS 399
            L   +P       +L+ L V  N L  F     S+  L     + N     +P      
Sbjct: 348 HLA-EVPELP---QNLKQLHVEYNPLREFPDIPESVEDL-----RMNSHLAEVPELP--- 395

Query: 400 SKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNR 459
             L  L +  N          +   ++  L +    +  P         +L      H+ 
Sbjct: 396 QNLKQLHVETNPLREFP----DIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

Query: 460 IN 461
            +
Sbjct: 452 HH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 84.7 bits (210), Expect = 7e-18
 Identities = 82/436 (18%), Positives = 146/436 (33%), Gaps = 72/436 (16%)

Query: 35  ELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGT 94
           E     +N+   +     N+        ++++   + P        +    L +      
Sbjct: 15  EPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC----- 68

Query: 95  FPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWI 154
                     +   L L+  N  +  L              L+ L  S N+L  + P   
Sbjct: 69  -------LDRQAHELELN--NLGLSSLPELPP--------HLESLVASCNSLT-ELPELP 110

Query: 155 LQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYID 214
            Q+   L V      + +    LP      L +L VS+N    KLP+ +      L  ID
Sbjct: 111 -QSLKSLLVDNNNLKALS---DLPPL----LEYLGVSNNQLE-KLPELQN--SSFLKIID 159

Query: 215 MANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFP 274
           + NN  +  LP       +L F+    N    EL         L  +   +N+    +  
Sbjct: 160 VDNNSLK-KLPDLPP---SLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLKK-LPD 212

Query: 275 KYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVL 334
             ++L     +   NN      E   L    L  +   NN+L   +P    +    LE L
Sbjct: 213 LPLSLES---IVAGNNILEELPELQNLPF--LTTIYADNNLLK-TLPDLPPS----LEAL 262

Query: 335 LMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPN 394
            +  N+L  ++P       SL  L VSEN  SG    S    +L +L    N++  ++ +
Sbjct: 263 NVRDNYLT-DLPELP---QSLTFLDVSENIFSGL---SELPPNLYYLNASSNEIR-SLCD 314

Query: 395 ALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMD 454
                  L  L++ +N    + +        L  L+   N+L   +      L++L    
Sbjct: 315 LP---PSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAE-VPELPQNLKQL---H 363

Query: 455 LSHNRINGSIPSCFTN 470
           + +N +    P    +
Sbjct: 364 VEYNPLR-EFPDIPES 378

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 92.8 bits (231), Expect = 5e-21
 Identities = 54/289 (18%), Positives = 104/289 (35%), Gaps = 26/289 (8%)

Query: 185 LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNF 244
              LD+ +N  T ++       L+ L  + + NN+     P +   +  L  L+LSKN  
Sbjct: 54  TALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112

Query: 245 SGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYM--NLTRLWFLYLDNNKF-SGKIEDGLL 301
                 +      L       N        K +   L ++  + L  N   S  IE+G  
Sbjct: 113 KELPEKMPKTLQELRV---HENEI--TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 302 KS-NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNH-GSLQLLS 359
           +   +L  + +++  ++  IP  +    S L  L +  N +   +    L    +L  L 
Sbjct: 168 QGMKKLSYIRIADTNIT-TIPQGL--PPS-LTELHLDGNKIT-KVDAASLKGLNNLAKLG 222

Query: 360 VSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISD 418
           +S N +S     S +    L  L++  N L   +P  L     +  + L +N  S I S+
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 281

Query: 419 QINES------SNLRVLLLRGNYLEGPI--SNQFCQLRRLGVMDLSHNR 459
                      ++   + L  N ++      + F  +     + L + +
Sbjct: 282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.5 bits (194), Expect = 3e-16
 Identities = 46/238 (19%), Positives = 91/238 (38%), Gaps = 21/238 (8%)

Query: 232 KTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNF---HDQIFPKYMNLTRLWFLYLD 288
                L L  N  +      F    +L  L   +N         F     L +L  LYL 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA---PLVKLERLYLS 108

Query: 289 NNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFS--SYLEVLLMSKNFLK-GNI 345
            N+   ++ + + K+  L+EL +  N ++  +    + F+  + + V+ +  N LK   I
Sbjct: 109 KNQLK-ELPEKMPKT--LQELRVHENEIT-KVRK--SVFNGLNQMIVVELGTNPLKSSGI 162

Query: 346 PMQLLNH-GSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRS-SKLM 403
                     L  + +++  ++          SL  L++  N ++  +  A  +  + L 
Sbjct: 163 ENGAFQGMKKLSYIRIADTNITTIPQGLPP--SLTELHLDGNKIT-KVDAASLKGLNNLA 219

Query: 404 TLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRIN 461
            L L  N  S + +  +  + +LR L L  N L   +       + + V+ L +N I+
Sbjct: 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 77.3 bits (191), Expect = 8e-16
 Identities = 49/289 (16%), Positives = 92/289 (31%), Gaps = 24/289 (8%)

Query: 35  ELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGT 94
            L+L  N I         N+  L  L    N++S   P     L  +E L LS +  +  
Sbjct: 56  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-E 114

Query: 95  FPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNL-AGDFPAW 153
            P         L+ LR+    N + +++       F   + +  ++L  N L +      
Sbjct: 115 LPEKMPKT---LQELRVH--ENEITKVRKS----VFNGLNQMIVVELGTNPLKSSGIENG 165

Query: 154 ILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYI 213
             Q   KL  + + + + T    +P      L  L +  N  T K+       L  L  +
Sbjct: 166 AFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKL 221

Query: 214 DMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHD--- 270
            ++ N        S+ +   L  LHL+ N    ++         +  +   +NN      
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 280

Query: 271 ---QIFPKYMNLTRLWFLYLDNNKFS-GKIEDGLLKS-NQLKELDMSNN 314
                            + L +N     +I+    +       + + N 
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 53/300 (17%), Positives = 89/300 (29%), Gaps = 57/300 (19%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESF-------ELNLAKNNIGGHLLDCLNNMTRLKVL 60
              LKNL  L L  N I+  +    +F        L L+KN +             L+ L
Sbjct: 72  FKNLKNLHTLILINNKIS-KISP-GAFAPLVKLERLYLSKNQLKELPEKMPKT---LQEL 126

Query: 61  DTSFNQLSGSLPSVIVNLASVEYLDLS-NSYFEGTFPISSLANHSKLKVLRLSSRNNNML 119
               N+++    SV   L  +  ++L  N          +     KL  +R++  + N+ 
Sbjct: 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA--DTNIT 184

Query: 120 QLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPH 179
            +              L  L L  N +     A  L+    L  L L+ NS +       
Sbjct: 185 TIPQGLP-------PSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSIS------- 229

Query: 180 SKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHL 239
                     V + +               L  + + NN+    +P  + D K +  ++L
Sbjct: 230 ---------AVDNGSLAN---------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270

Query: 240 SKNNFSG------ELSTLFTGCVSLWFLDRSHNNFHDQIFPKYM--NLTRLWFLYLDNNK 291
             NN S             T   S   +    N              +     + L N K
Sbjct: 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 51/194 (26%), Positives = 77/194 (39%), Gaps = 10/194 (5%)

Query: 280 TRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKN 339
                L L NNK +   +        L  L + NN +S  I          LE L +SKN
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKN 110

Query: 340 FLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDL-SGTIPNALF 397
            LK  +P ++    +LQ L V EN ++    S F+ L+ ++ + +  N L S  I N  F
Sbjct: 111 QLK-ELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 398 RS-SKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLS 456
           +   KL  + + D   + I         +L  L L GN +    +     L  L  + LS
Sbjct: 168 QGMKKLSYIRIADTNITTI---PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224

Query: 457 HNRINGSIPSCFTN 470
            N I+        N
Sbjct: 225 FNSISAVDNGSLAN 238

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 94.0 bits (234), Expect = 6e-21
 Identities = 77/428 (17%), Positives = 144/428 (33%), Gaps = 59/428 (13%)

Query: 13  NLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLP 72
           ++  +DLS N+I     ++ SF                   +  L+ L          + 
Sbjct: 31  HVNYVDLSLNSI--AELNETSFS-----------------RLQDLQFLKVEQQTPGLVIR 71

Query: 73  S-VIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLP--T 129
           +     L+S+  L L  + F       +    + L+VL L+      L       L    
Sbjct: 72  NNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLT---QCNLD---GAVLSGNF 124

Query: 130 FQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLD 189
           F+    L+ L L  NN+    PA    N  +  VL LT N      ++     + L +  
Sbjct: 125 FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN------KVKSICEEDLLNF- 177

Query: 190 VSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELS 249
                   +      + L  +   DM           +     ++T L LS N F   ++
Sbjct: 178 --------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA 229

Query: 250 TLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKEL 309
             F          +  +      +    +     F   DN  F G      L+++ +K  
Sbjct: 230 KRFF---DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG------LEASGVKTC 280

Query: 310 DMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNH-GSLQLLSVSENCLSGF 368
           D+S + +   +   + +  + LE L +++N +   I          L  L++S+N L   
Sbjct: 281 DLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSI 338

Query: 369 MTSSF-SLSSLVHLYVQRNDLSGTIPNALFRS-SKLMTLDLRDNGFSGIISDQINESSNL 426
            +  F +L  L  L +  N +   + +  F     L  L L  N    +     +  ++L
Sbjct: 339 DSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL 397

Query: 427 RVLLLRGN 434
           + + L  N
Sbjct: 398 QKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 82.9 bits (205), Expect = 2e-17
 Identities = 65/358 (18%), Positives = 124/358 (34%), Gaps = 40/358 (11%)

Query: 129 TFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDF---L 185
           +F    DL++L +              +  + L +L L  N F    QL     +    L
Sbjct: 49  SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL---QLETGAFNGLANL 105

Query: 186 HHLDVSSNNFTG-KLPQDKGIILQKLLYIDMANNRFEGNLPSSIGD-MKTLTFLHLSKNN 243
             L ++  N  G  L  +    L  L  + + +N  +   P+S    M+    L L+ N 
Sbjct: 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165

Query: 244 FSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKS 303
                           F                + L+ +    ++      +      K+
Sbjct: 166 VKSICEEDLLNFQGKHFT--------------LLRLSSITLQDMNEYWLGWEKCGNPFKN 211

Query: 304 NQLKELDMSNNMLSGHIPHWI--ANFSSYLEVLLMSKNFLKG------------NIPMQL 349
             +  LD+S N     +      A   + ++ L++S ++  G            N   + 
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

Query: 350 LNHGSLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRS-SKLMTLDL 407
           L    ++   +S++ +   + S FS  + L  L + +N+++  I +  F   + L+ L+L
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNL 330

Query: 408 RDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIP 465
             N    I S        L VL L  N++       F  L  L  + L  N++  S+P
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVP 387

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 77.5 bits (191), Expect = 1e-15
 Identities = 65/351 (18%), Positives = 112/351 (31%), Gaps = 41/351 (11%)

Query: 9   HKLKNLEALDLSFNNINGTVESQESF-------ELNLAKNNIGGHLL--DCLNNMTRLKV 59
             L +L  L L +N          +F        L L + N+ G +L  +    +T L++
Sbjct: 76  RGLSSLIILKLDYNQF--LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133

Query: 60  LDTSFNQLSGSLP-SVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNM 118
           L    N +    P S  +N+     LDL+ +  + +     L N        L   +  +
Sbjct: 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITL 192

Query: 119 LQLKTENF----LPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGN 174
             +                  +  LDLS N                 ++  L  ++    
Sbjct: 193 QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252

Query: 175 LQLPHSKHDFLHHLDVSSNNFTGKLPQD--KGIILQKLLYIDMANNRFEGNLPSSI-GDM 231
                              NF         KG+    +   D++ ++    L  S+    
Sbjct: 253 GS------------SFGHTNFK-DPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHF 298

Query: 232 KTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNF---HDQIFPKYMNLTRLWFLYLD 288
             L  L L++N  +      F G   L  L+ S N       ++F    NL +L  L L 
Sbjct: 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF---ENLDKLEVLDLS 355

Query: 289 NNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKN 339
            N      +   L    LKEL +  N L   +P  I +  + L+ + +  N
Sbjct: 356 YNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 36/202 (17%), Positives = 73/202 (36%), Gaps = 18/202 (8%)

Query: 285 LYLDNNKFSGKIEDGLLKS-NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKG 343
           + L  N  + ++ +        L+ L +        I +      S L +L +  N    
Sbjct: 35  VDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL- 92

Query: 344 NIPMQLLNH-GSLQLLSVSENCLSGFMTSSFS---LSSLVHLYVQRNDLSGTIPNALFRS 399
            +     N   +L++L++++  L G + S      L+SL  L ++ N++    P + F +
Sbjct: 93  QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN 152

Query: 400 -SKLMTLDLRDNGFSGIISDQIN--ESSNLRVLLLRGNYL--------EGPISNQFCQLR 448
             +   LDL  N    I  + +   +  +  +L L    L                 +  
Sbjct: 153 MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212

Query: 449 RLGVMDLSHNRINGSIPSCFTN 470
            +  +DLS N    S+   F +
Sbjct: 213 SITTLDLSGNGFKESMAKRFFD 234

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 56.7 bits (137), Expect = 7e-09
 Identities = 61/303 (20%), Positives = 101/303 (33%), Gaps = 51/303 (16%)

Query: 2   LFLGAGLHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLD 61
           +   +    ++    LDL+FN +      +E         N  G     L   + + + D
Sbjct: 144 IQPASFFLNMRRFHVLDLTFNKV--KSICEEDL------LNFQGKHFTLLRL-SSITLQD 194

Query: 62  TSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFP--ISSLANHSKLKVLRLSSRNNNML 119
            +   L            S+  LDLS + F+ +           +K++ L LS+  N   
Sbjct: 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254

Query: 120 QLKTENFLPTFQL------KHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTG 173
                NF               +K  DLS + +       +  + T LE L L  N    
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN- 312

Query: 174 NLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGD-MK 232
                           +  N F G         L  LL ++++ N   G++ S + + + 
Sbjct: 313 ---------------KIDDNAFWG---------LTHLLKLNLSQNFL-GSIDSRMFENLD 347

Query: 233 TLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHN---NFHDQIFPKYMNLTRLWFLYLDN 289
            L  L LS N+        F G  +L  L    N   +  D IF     LT L  ++L  
Sbjct: 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF---DRLTSLQKIWLHT 404

Query: 290 NKF 292
           N +
Sbjct: 405 NPW 407

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 92.3 bits (229), Expect = 5e-20
 Identities = 69/335 (20%), Positives = 116/335 (34%), Gaps = 46/335 (13%)

Query: 132 LKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVS 191
           L +    L++  + L    P  +  +   +  L + +N+ T    LP      L  L+VS
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCLPAH---ITTLVIPDNNLT---SLPAL-PPELRTLEVS 89

Query: 192 SNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTL 251
            N  T  LP      L +L                       L  L +  N     L++L
Sbjct: 90  GNQLT-SLPVLPPG-LLELSIFSNPLTHLPALPSG-------LCKLWIFGNQ----LTSL 136

Query: 252 FTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDM 311
                 L  L  S N       P     + L  L+  NN+ +  +       + L+EL +
Sbjct: 137 PVLPPGLQELSVSDNQL--ASLPA--LPSELCKLWAYNNQLT-SLPMLP---SGLQELSV 188

Query: 312 SNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTS 371
           S+N L+  +P   +     L  L    N L  ++P        L+ L VS N L+     
Sbjct: 189 SDNQLA-SLPTLPSE----LYKLWAYNNRLT-SLPALP---SGLKELIVSGNRLTSL--- 236

Query: 372 SFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLL 431
               S L  L V  N L+ ++P      S L++L +  N  + +  + +   S+   + L
Sbjct: 237 PVLPSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLTRL-PESLIHLSSETTVNL 291

Query: 432 RGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPS 466
            GN L         ++           R + +  S
Sbjct: 292 EGNPLSERTLQALREITSAPGYSGPIIRFDMAGAS 326

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 80.3 bits (198), Expect = 3e-16
 Identities = 74/369 (20%), Positives = 124/369 (33%), Gaps = 55/369 (14%)

Query: 82  EYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDL 141
             L++  S    T P    A+   +  L +   +NN+  L             +L+ L++
Sbjct: 43  AVLNVGESGLT-TLPDCLPAH---ITTLVIP--DNNLTSLPALPP--------ELRTLEV 88

Query: 142 SHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQ 201
           S N L    P  +     +L +             LP      L  L +  N  T  LP 
Sbjct: 89  SGNQLT-SLPV-LPPGLLELSIFSNPLTHLP---ALPSG----LCKLWIFGNQLT-SLPV 138

Query: 202 DKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFL 261
                   L  + +++N+   +LP+   +   L  L    N     L++L      L  L
Sbjct: 139 L----PPGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQ----LTSLPMLPSGLQEL 186

Query: 262 DRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIP 321
             S N       P     + L+ L+  NN+ +  +       + LKEL +S N L+  +P
Sbjct: 187 SVSDNQL--ASLPT--LPSELYKLWAYNNRLT-SLPALP---SGLKELIVSGNRLT-SLP 237

Query: 322 HWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHL 381
              +     L+ L++S N L  ++PM       L  LSV  N L+    S   LSS   +
Sbjct: 238 VLPSE----LKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLTRLPESLIHLSSETTV 289

Query: 382 YVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPIS 441
            ++ N LS        R                +        +    L    ++L     
Sbjct: 290 NLEGNPLS-ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA-DWLVPARE 347

Query: 442 NQFCQLRRL 450
            +     R 
Sbjct: 348 GEPAPADRW 356

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 79.9 bits (197), Expect = 4e-16
 Identities = 73/353 (20%), Positives = 113/353 (32%), Gaps = 57/353 (16%)

Query: 11  LKNLEALDLSFNNINGTVESQESF----ELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQ 66
                 L++  + +  T            L +  NN    L         L+ L+ S NQ
Sbjct: 39  NNGNAVLNVGESGL--TTLPDCLPAHITTLVIPDNN----LTSLPALPPELRTLEVSGNQ 92

Query: 67  LSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENF 126
           L+ SLP +   L  +       ++          A  S L  L +     N L       
Sbjct: 93  LT-SLPVLPPGLLELSIFSNPLTHLP--------ALPSGLCKLWIF---GNQL-----TS 135

Query: 127 LPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLH 186
           LP       L+ L +S N LA   PA      ++L  L   NN  T    LP      L 
Sbjct: 136 LPVLPPG--LQELSVSDNQLA-SLPALP----SELCKLWAYNNQLT---SLPMLP-SGLQ 184

Query: 187 HLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSG 246
            L VS N     LP        +L  +   NNR   +LP+       L  L +S N    
Sbjct: 185 ELSVSDNQLA-SLPTL----PSELYKLWAYNNRLT-SLPALPS---GLKELIVSGN---- 231

Query: 247 ELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQL 306
            L++L      L  L  S N       P     + L  L +  N+ + ++ + L+  +  
Sbjct: 232 RLTSLPVLPSELKELMVSGNRL--TSLPM--LPSGLLSLSVYRNQLT-RLPESLIHLSSE 286

Query: 307 KELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLS 359
             +++  N LS      +   +S                        +L L +
Sbjct: 287 TTVNLEGNPLSERTLQALREITS-APGYSGPIIRFDMAGASAPRETRALHLAA 338

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 71.1 bits (174), Expect = 3e-13
 Identities = 72/343 (20%), Positives = 116/343 (33%), Gaps = 59/343 (17%)

Query: 4   LGAGLHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTS 63
           L      L  L        ++          +L +  N +   L         L+ L  S
Sbjct: 96  LPVLPPGLLELSIFSNPLTHLPALPSGLC--KLWIFGNQLT-SLPVLPPG---LQELSVS 149

Query: 64  FNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANH-SKLKVLRLSSRNNNMLQLK 122
            NQL+ SLP++   L     L   N+       ++SL    S L+ L +S   +N L   
Sbjct: 150 DNQLA-SLPALPSEL---CKLWAYNN------QLTSLPMLPSGLQELSVS---DNQLA-- 194

Query: 123 TENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKH 182
               LPT  L  +L  L   +N L    PA      + L+ L ++ N  T    LP    
Sbjct: 195 ---SLPT--LPSELYKLWAYNNRLT-SLPALP----SGLKELIVSGNRLT---SLPVLPS 241

Query: 183 DFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKN 242
           + L  L VS N  T  LP     +   LL + +  N+    LP S+  + + T ++L  N
Sbjct: 242 E-LKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294

Query: 243 NFSGELSTLFTGCVSLWFLD---RSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDG 299
             S           S           +        +   L      +L   +     E  
Sbjct: 295 PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR-----EGE 349

Query: 300 LLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLK 342
              +++       +N            FS +L+ L  ++NF+K
Sbjct: 350 PAPADRWHMFGQEDNA---------DAFSLFLDRLSETENFIK 383

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 24/167 (14%)

Query: 304 NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSEN 363
           N    L++  + L+  +P       +++  L++  N L  ++P        L+ L VS N
Sbjct: 40  NGNAVLNVGESGLT-TLP---DCLPAHITTLVIPDNNLT-SLPALP---PELRTLEVSGN 91

Query: 364 CLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINES 423
            L+        L  L         L             L  L +  N  + +        
Sbjct: 92  QLTSLPVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLTSL----PVLP 140

Query: 424 SNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
             L+ L +  N L   +     +L +L      +N++  S+P   + 
Sbjct: 141 PGLQELSVSDNQLAS-LPALPSELCKL---WAYNNQLT-SLPMLPSG 182

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.5 bits (220), Expect = 1e-19
 Identities = 46/320 (14%), Positives = 93/320 (29%), Gaps = 35/320 (10%)

Query: 7   GLHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNN--MTRLKVLDTSF 64
            L + +     D +  +      +  + ++            D L +        L+   
Sbjct: 31  VLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS 90

Query: 65  NQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTE 124
             L    P     L+ ++++ +  +      P  ++   + L+ L L+    N L+    
Sbjct: 91  VPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELP-DTMQQFAGLETLTLA---RNPLRA--- 141

Query: 125 NFLPTF--QLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKH 182
             LP     L   L+ L +       + P  +   +   E   L N              
Sbjct: 142 --LPASIASLNR-LRELSIRACPELTELPEPLASTDASGEHQGLVN-------------- 184

Query: 183 DFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKN 242
             L  L +        LP      LQ L  + + N+     L  +I  +  L  L L   
Sbjct: 185 --LQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGC 239

Query: 243 NFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLK 302
                   +F G   L  L     +    +      LT+L  L L       ++   + +
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

Query: 303 SNQLKELDMSNNMLSGHIPH 322
                 + +  ++ +    H
Sbjct: 300 LPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.1 bits (188), Expect = 2e-15
 Identities = 41/327 (12%), Positives = 97/327 (29%), Gaps = 27/327 (8%)

Query: 136 LKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNF 195
            + L    +     +   +    ++ +     + +   +     + ++       +    
Sbjct: 14  RENLYFQGSTALRPYHDVL----SQWQRHYNADRNRWHSAWRQANSNN-PQIETRTGRAL 68

Query: 196 TGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGC 255
                  +       + +++ +       P     +  L  + +       EL       
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF 126

Query: 256 VSLWFLDRSHNNFHDQIFPKYM-NLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNN 314
             L  L  + N    +  P  + +L RL  L +                 +L EL     
Sbjct: 127 AGLETLTLARNPL--RALPASIASLNRLRELSIRAC-------------PELTELP--EP 169

Query: 315 MLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFS 374
           + S           + L+ L +    ++ ++P  + N  +L+ L +  + LS    +   
Sbjct: 170 LASTDASGEHQGLVN-LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHH 227

Query: 375 LSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGN 434
           L  L  L ++        P      + L  L L+D      +   I+  + L  L LRG 
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287

Query: 435 YLEGPISNQFCQLRRLGVMDLSHNRIN 461
                + +   QL    ++ +  +   
Sbjct: 288 VNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.4 bits (186), Expect = 4e-15
 Identities = 47/309 (15%), Positives = 93/309 (30%), Gaps = 24/309 (7%)

Query: 141 LSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNL-QLPHSKHDFLHHLDVSSNNFTGKL 199
             + +      AW   N+   ++   T  +       L  +       L++ S     + 
Sbjct: 38  HYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QF 96

Query: 200 PQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLW 259
           P      L  L ++ +        LP ++     L  L L++N     L         L 
Sbjct: 97  PDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLR 153

Query: 260 FLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGH 319
            L                 LT L          S            L+ L +    +   
Sbjct: 154 ELSIRACP----------ELTEL-----PEPLASTDASGEHQGLVNLQSLRLEWTGIR-S 197

Query: 320 IPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSE-NCLSGFMTSSFSLSSL 378
           +P  IAN  + L+ L +  + L   +   + +   L+ L +     L  +       + L
Sbjct: 198 LPASIANLQN-LKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255

Query: 379 VHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG 438
             L ++      T+P  + R ++L  LDLR       +   I +     ++L+  +    
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315

Query: 439 PISNQFCQL 447
              ++    
Sbjct: 316 LDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 74.6 bits (184), Expect = 7e-15
 Identities = 48/333 (14%), Positives = 99/333 (29%), Gaps = 41/333 (12%)

Query: 51  LNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLR 110
            ++ +  + L    +        V+         D +  +       S+           
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRA 67

Query: 111 LSSRNNNMLQLKTEN------------FLPT--FQLKHDLKYLDLSHNNLAGDFPAWILQ 156
           L +  + +                     P   F+L H L+++ +    L  + P  + Q
Sbjct: 68  LKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSH-LQHMTIDAAGLM-ELPDTM-Q 124

Query: 157 NNTKLEVLCLTNNSFT------GNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGII---- 206
               LE L L  N          +L         L  L + +     +LP+         
Sbjct: 125 QFAGLETLTLARNPLRALPASIASLN-------RLRELSIRACPELTELPEPLASTDASG 177

Query: 207 ----LQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLD 262
               L  L  + +       +LP+SI +++ L  L +  +  S  L         L  LD
Sbjct: 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235

Query: 263 RSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPH 322
                      P +     L  L L +      +   + +  QL++LD+   +    +P 
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

Query: 323 WIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSL 355
            IA   +   ++L+  +        + +   + 
Sbjct: 296 LIAQLPA-NCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.9 bits (177), Expect = 6e-14
 Identities = 50/309 (16%), Positives = 94/309 (30%), Gaps = 30/309 (9%)

Query: 180 SKHDFLHH------LDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKT 233
           S H   HH      L    +            +L +      A+     +      +   
Sbjct: 3   SSHHHHHHSSGRENLYFQGSTALRPYHD----VLSQWQRHYNADRNRW-HSAWRQANSNN 57

Query: 234 LTFLHLSKNNFSGELSTLFTGCV-SLWFLDRSHNNFHDQIFPKYM-NLTRLWFLYLDNNK 291
                 +          L          L+          FP     L+ L  + +D   
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAG 115

Query: 292 FSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKN---------FLK 342
              ++ D + +   L+ L ++ N L   +P  IA+ +  L  L +               
Sbjct: 116 LM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNR-LRELSIRACPELTELPEPLAS 172

Query: 343 GNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKL 402
            +   +     +LQ L +    +     S  +L +L  L ++ + LS  +  A+    KL
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL 231

Query: 403 MTLDLRDNGFSGIISDQINESSNLRVLLLRG-NYLEGPISNQFCQLRRLGVMDLSHNRIN 461
             LDLR               + L+ L+L+  + L   +     +L +L  +DL      
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT-LPLDIHRLTQLEKLDLRGCVNL 290

Query: 462 GSIPSCFTN 470
             +PS    
Sbjct: 291 SRLPSLIAQ 299

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 41/263 (15%), Positives = 75/263 (28%), Gaps = 51/263 (19%)

Query: 6   AGLHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFN 65
               +L +L+ + +    +                      L D +     L+ L  + N
Sbjct: 98  DQAFRLSHLQHMTIDAAGLM--------------------ELPDTMQQFAGLETLTLARN 137

Query: 66  QLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTEN 125
            L  +LP+ I +L  +  L +         P    +  +  +   L +            
Sbjct: 138 PLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN------------ 184

Query: 126 FLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHD-- 183
                     L+ L L    +    PA I  N   L+ L + N+  +    L  + H   
Sbjct: 185 ----------LQSLRLEWTGIR-SLPASI-ANLQNLKSLKIRNSPLS---ALGPAIHHLP 229

Query: 184 FLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNN 243
            L  LD+         P   G     L  + + +      LP  I  +  L  L L    
Sbjct: 230 KLEELDLRGCTALRNYPPIFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288

Query: 244 FSGELSTLFTGCVSLWFLDRSHN 266
               L +L     +   +    +
Sbjct: 289 NLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 38/182 (20%), Positives = 58/182 (31%), Gaps = 34/182 (18%)

Query: 2   LFLGAGLHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLD 61
                    L NL++L L +  I                      L   + N+  LK L 
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIR--------------------SLPASIANLQNLKSLK 212

Query: 62  TSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQL 121
              + LS +L   I +L  +E LDL        +P       + LK L L   +     L
Sbjct: 213 IRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYP-PIFGGRAPLKRLILKDCS----NL 266

Query: 122 KTENFLPTF--QLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQ-LP 178
            T   LP    +L   L+ LDL         P+ I        ++ +  +      Q  P
Sbjct: 267 LT---LPLDIHRLTQ-LEKLDLRGCVNLSRLPSLI-AQLPANCIILVPPHLQAQLDQHRP 321

Query: 179 HS 180
            +
Sbjct: 322 VA 323

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 86.6 bits (215), Expect = 6e-19
 Identities = 55/288 (19%), Positives = 104/288 (36%), Gaps = 25/288 (8%)

Query: 185 LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNF 244
              LD+ +N+ + +L +D    LQ L  + + NN+       +   ++ L  L++SKN+ 
Sbjct: 56  TTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114

Query: 245 SGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYM--NLTRLWFLYLDNNKF-SGKIEDGLL 301
                 L +  V L       N    +  PK +   L  +  + +  N   +   E G  
Sbjct: 115 VEIPPNLPSSLVELRI---HDNRI--RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

Query: 302 KSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNH-GSLQLLSV 360
              +L  L +S   L+  IP    +    L  L +  N ++  I ++ L     L  L +
Sbjct: 170 DGLKLNYLRISEAKLT-GIP---KDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGL 224

Query: 361 SENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQ 419
             N +      S S L +L  L++  N LS  +P  L     L  + L  N  + +  + 
Sbjct: 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND 283

Query: 420 I------NESSNLRVLLLRGNYLEGPI--SNQFCQLRRLGVMDLSHNR 459
                   + +    + L  N +         F  +     +   + +
Sbjct: 284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 60/307 (19%), Positives = 100/307 (32%), Gaps = 28/307 (9%)

Query: 166 LTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLP 225
           L +   T +   P   H  L  +  S       +P++   I      +D+ NN       
Sbjct: 16  LDSLPPTYSAMCPFGCHCHLRVVQCSDLGLK-AVPKE---ISPDTTLLDLQNNDISELRK 71

Query: 226 SSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNN---FHDQIFPKYMNLTRL 282
                ++ L  L L  N  S      F+    L  L  S N+       +     +L  L
Sbjct: 72  DDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS---SLVEL 128

Query: 283 WFLYLDNNKFSGKIEDGLLKS-NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFL 341
               + +N+   K+  G+      +  ++M  N L        A     L  L +S+  L
Sbjct: 129 ---RIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL 184

Query: 342 KGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRS- 399
              IP  L    +L  L +  N +           S L  L +  N +   I N      
Sbjct: 185 T-GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFL 240

Query: 400 SKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLR------RLGVM 453
             L  L L +N  S  +   + +   L+V+ L  N +     N FC +           +
Sbjct: 241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI 299

Query: 454 DLSHNRI 460
            L +N +
Sbjct: 300 SLFNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 47/290 (16%), Positives = 94/290 (32%), Gaps = 27/290 (9%)

Query: 35  ELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGT 94
            L+L  N+I     D    +  L  L    N++S         L  ++ L +S +     
Sbjct: 58  LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN----- 112

Query: 95  FPISSLANH--SKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPA 152
             +  +  +  S L  LR+   +N + ++        F    ++  +++  N L      
Sbjct: 113 -HLVEIPPNLPSSLVELRIH--DNRIRKVPKG----VFSGLRNMNCIEMGGNPLENSGFE 165

Query: 153 WILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLY 212
               +  KL  L ++    T    +P    + L+ L +  N     +  +  +   KL  
Sbjct: 166 PGAFDGLKLNYLRISEAKLT---GIPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYR 221

Query: 213 IDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNN---FH 269
           + + +N+       S+  + TL  LHL  N  S  +         L  +    NN     
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVG 280

Query: 270 DQIF---PKYMNLTRLWFLYLDNNKFS-GKIEDGLLKS-NQLKELDMSNN 314
              F      +       + L NN     +++    +       +   N 
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.9 bits (169), Expect = 4e-13
 Identities = 45/193 (23%), Positives = 71/193 (36%), Gaps = 9/193 (4%)

Query: 280 TRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKN 339
                L L NN  S   +D       L  L + NN +S  I     +    L+ L +SKN
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKN 112

Query: 340 FLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDL-SGTIPNALF 397
            L   IP  L +  SL  L + +N +       FS L ++  + +  N L +       F
Sbjct: 113 HLV-EIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

Query: 398 RSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSH 457
              KL  L + +   +GI     +    L  L L  N ++        +  +L  + L H
Sbjct: 170 DGLKLNYLRISEAKLTGI---PKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH 226

Query: 458 NRINGSIPSCFTN 470
           N+I        + 
Sbjct: 227 NQIRMIENGSLSF 239

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 50/300 (16%), Positives = 97/300 (32%), Gaps = 58/300 (19%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESF-------ELNLAKNNIGGHLLDCLNNMTRLKVL 60
              L++L AL L  N I+  +  + +F       +L ++KN++     +  ++   L  L
Sbjct: 74  FKGLQHLYALVLVNNKIS-KIHEK-AFSPLRKLQKLYISKNHLVEIPPNLPSS---LVEL 128

Query: 61  DTSFNQLSGSLPSVIVNLASVEYLDLS-NSYFEGTFPISSLANHSKLKVLRLSSRNNNML 119
               N++      V   L ++  +++  N      F   +     KL  LR+S     + 
Sbjct: 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG-LKLNYLRIS--EAKLT 185

Query: 120 QLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPH 179
            +  +           L  L L HN +        L   +KL  L L +N          
Sbjct: 186 GIPKDLP-------ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR------- 230

Query: 180 SKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHL 239
                     + + + +          L  L  + + NN+    +P+ + D+K L  ++L
Sbjct: 231 ---------MIENGSLSF---------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL 271

Query: 240 SKNNFSGELSTLFTGC------VSLWFLDRSHNNFHDQIFPKYM--NLTRLWFLYLDNNK 291
             NN +      F              +   +N              +T    +   N K
Sbjct: 272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 86.8 bits (215), Expect = 2e-18
 Identities = 85/428 (19%), Positives = 153/428 (35%), Gaps = 39/428 (9%)

Query: 9   HKLKNLEALDLSFNNINGTVESQESF----ELNLAKNNIGGHLLDCL------NNMTRLK 58
              ++LE LD+S N +     S         L+L+ N+      D L       N+T+L 
Sbjct: 97  LFNQDLEYLDVSHNRL--QNISCCPMASLRHLDLSFND-----FDVLPVCKEFGNLTKLT 149

Query: 59  VLDTSFNQL-SGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNN 117
            L  S  +     L  V     S   LDL + + +G    S         VL L    N+
Sbjct: 150 FLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESL--QIPNTTVLHLVFHPNS 207

Query: 118 MLQLKTENFLPTFQLKHDLKYLDLSHN------NLAGDFPAWILQNNTKLEVLCLTNNSF 171
           +  ++    +        L  + L+            +        N  L+ +  T    
Sbjct: 208 LFSVQVNMSVNALGHLQ-LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266

Query: 172 TGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGII----LQKLLYIDMANNRFEGNLPSS 227
               Q        + +L++ +   T ++ +++       L+ L+   + N  F  +  + 
Sbjct: 267 VKLFQF--FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEAL 324

Query: 228 IGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYL 287
                 +    LS ++             S  FL+ + N F D +F     L RL  L L
Sbjct: 325 YSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384

Query: 288 DNNKFS--GKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNI 345
             N      K+       + L+ LD+S N L+ H       ++  + VL +S N L G++
Sbjct: 385 QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444

Query: 346 PMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRS-SKLMT 404
              L     +++L +  N +         L +L  L V  N L  ++P+ +F   + L  
Sbjct: 445 FRCLPPK--VKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQY 501

Query: 405 LDLRDNGF 412
           + L DN +
Sbjct: 502 IWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 79.1 bits (195), Expect = 6e-16
 Identities = 75/425 (17%), Positives = 136/425 (32%), Gaps = 37/425 (8%)

Query: 55  TRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSR 114
            R K L  S N +S      I  L+ +  L LS++    +        +  L+ L +S  
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVS-- 108

Query: 115 NNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGN 174
           +N   +L+    +    +   L++LDLS N+           N TKL  L L+   F   
Sbjct: 109 HN---RLQN---ISCCPMAS-LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-- 159

Query: 175 LQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTL 234
            QL       LH   +  +  +  +   +   LQ      +       +L S   +M   
Sbjct: 160 -QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN 218

Query: 235 TFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSG 294
              HL  +N              +   D +       +       T L            
Sbjct: 219 ALGHLQLSN--------------IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264

Query: 295 KIEDGL--LKSNQLKELDMSNNMLSGHIPHWIANFSS----YLEVLLMSKNFLKGNIPMQ 348
                        ++ L++ N  ++  I      +S      L +  +       +    
Sbjct: 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEAL 324

Query: 349 LLNHGSLQLLSVSENCLSGF-MTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDL 407
                 + +  +S +      M    S SS   L   +N  + ++        +L TL L
Sbjct: 325 YSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384

Query: 408 RDNGFSGI--ISDQINESSNLRVLLLRGNYLEGPISNQFCQL-RRLGVMDLSHNRINGSI 464
           + NG      ++      S+L  L +  N L     ++ C     + V++LS N + GS+
Sbjct: 385 QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444

Query: 465 PSCFT 469
             C  
Sbjct: 445 FRCLP 449

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 76.1 bits (187), Expect = 5e-15
 Identities = 65/376 (17%), Positives = 138/376 (36%), Gaps = 22/376 (5%)

Query: 4   LGAGLHKLKNLEALDLSFNNI------NGTVESQESFELNLAKNNIGGHLLDCLNNM-TR 56
           +      L  L  L LS                     L+L   +I G   + L    T 
Sbjct: 138 VCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197

Query: 57  LKVLDTSFNQLSGSLPSVIVN-LASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRN 115
           +  L    N L     ++ VN L  ++  ++  +       ++ L+  ++   L   +  
Sbjct: 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257

Query: 116 NNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAG----DFPAWILQNNTKLEVLCLTNNSF 171
           +     K    L  F     ++YL++ +  +      +   +       L +  + N  F
Sbjct: 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF 317

Query: 172 TGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDM 231
             + +  +S    ++   +S ++ T  +            +++   N F  ++      +
Sbjct: 318 LFSKEALYSVFAEMNIKMLSISD-TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL 376

Query: 232 KTLTFLHLSKNNFS--GELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTR-LWFLYLD 288
           K L  L L +N      +++ +     SL  LD S N+ +   + +       +  L L 
Sbjct: 377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436

Query: 289 NNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQ 348
           +N  +G +   L    ++K LD+ NN +   IP  + +  + L+ L ++ N LK ++P  
Sbjct: 437 SNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQA-LQELNVASNQLK-SVPDG 491

Query: 349 LL-NHGSLQLLSVSEN 363
           +     SLQ + + +N
Sbjct: 492 VFDRLTSLQYIWLHDN 507

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.6 bits (201), Expect = 1e-16
 Identities = 58/299 (19%), Positives = 101/299 (33%), Gaps = 29/299 (9%)

Query: 156 QNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDM 215
            NN          N+ +G      S  D      +   N    +   K  ++ +   + +
Sbjct: 7   INNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQL 66

Query: 216 ANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPK 275
                  +LP ++     +T L +++N     L  L     SL +LD   N       P+
Sbjct: 67  NRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPA---SLEYLDACDNRL--STLPE 117

Query: 276 YMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLL 335
                 L  L +DNN+ +  + +       L+ ++  NN L+  +P    +    LEVL 
Sbjct: 118 --LPASLKHLDVDNNQLT-MLPELP---ALLEYINADNNQLT-MLPELPTS----LEVLS 166

Query: 336 MSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSL----VHLYVQRNDLSGT 391
           +  N L   +P       SL+ L VS N L                 +    + N ++  
Sbjct: 167 VRNNQLTF-LPELP---ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-H 221

Query: 392 IPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRL 450
           IP  +       T+ L DN  S  I + +++ +          Y       Q    R L
Sbjct: 222 IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPL 280

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.8 bits (186), Expect = 8e-15
 Identities = 61/310 (19%), Positives = 101/310 (32%), Gaps = 37/310 (11%)

Query: 52  NNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRL 111
           NN   L   ++ +N +SG+           E   L          +      ++   L+L
Sbjct: 8   NNNFSLS-QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQL 66

Query: 112 SSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSF 171
           +      L       LP       +  L+++ N L    P         LE L   +N  
Sbjct: 67  N---RLNLS-----SLPDNLPPQ-ITVLEITQNAL-ISLPELP----ASLEYLDACDNRL 112

Query: 172 TGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDM 231
           +    LP      L HLDV +N  T  LP+        L YI+  NN+    LP      
Sbjct: 113 S---TLPELPAS-LKHLDVDNNQLT-MLPEL----PALLEYINADNNQLT-MLPELPT-- 160

Query: 232 KTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFH---DQIFPKYMNLTRLWFLYLD 288
            +L  L +  N     L+ L     SL  LD S N            + +     F    
Sbjct: 161 -SLEVLSVRNNQ----LTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCR 215

Query: 289 NNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQ 348
            N+ +  I + +L  +    + + +N LS  I   ++  ++        + +   +   Q
Sbjct: 216 ENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA-QPDYHGPRIYFSMSDGQQ 273

Query: 349 LLNHGSLQLL 358
              H  L   
Sbjct: 274 NTLHRPLADA 283

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 71.2 bits (174), Expect = 2e-13
 Identities = 68/288 (23%), Positives = 99/288 (34%), Gaps = 42/288 (14%)

Query: 11  LKNLEALDLSFNNINGTVESQESF------ELNLAKNNIGGHLLDCLNNMTRLKVLDTSF 64
               E   L   N N  V   +        EL L + N+   L D L    ++ VL+ + 
Sbjct: 33  WDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPDNLP--PQITVLEITQ 89

Query: 65  NQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTE 124
           N L  SLP +  +L   EYLD  ++    T P    A+   LK L +    NN L     
Sbjct: 90  NALI-SLPELPASL---EYLDACDNRLS-TLP-ELPAS---LKHLDVD---NNQLT---- 133

Query: 125 NFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDF 184
             LP       L+Y++  +N L    P       T LEVL + NN  T   +LP S    
Sbjct: 134 -MLPELPAL--LEYINADNNQL-TMLPELP----TSLEVLSVRNNQLTFLPELPES---- 181

Query: 185 LHHLDVSSNNFTGKLPQDKGIILQ---KLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSK 241
           L  LDVS+N     LP             ++     NR   ++P +I  +     + L  
Sbjct: 182 LEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILED 239

Query: 242 NNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDN 289
           N  S  +    +   +          F      +      L       
Sbjct: 240 NPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAW 287

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 62.7 bits (152), Expect = 1e-10
 Identities = 45/213 (21%), Positives = 85/213 (39%), Gaps = 29/213 (13%)

Query: 261 LDRSHN---NFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLS 317
            +  +N     +   F  +    +      + N+    +++ L+   Q  EL ++   LS
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN--QFSELQLNRLNLS 72

Query: 318 GHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSS 377
             +P    N    + VL +++N L  ++P       SL+ L   +N LS         +S
Sbjct: 73  -SLP---DNLPPQITVLEITQNALI-SLPELP---ASLEYLDACDNRLSTL---PELPAS 121

Query: 378 LVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLE 437
           L HL V  N L+  +P      + L  ++  +N  + +  +     ++L VL +R N L 
Sbjct: 122 LKHLDVDNNQLT-MLPELP---ALLEYINADNNQLTML-PELP---TSLEVLSVRNNQLT 173

Query: 438 GPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
             +      L  L   D+S N +  S+P+    
Sbjct: 174 F-LPELPESLEAL---DVSTNLLE-SLPAVPVR 201

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.6 bits (105), Expect = 6e-05
 Identities = 33/238 (13%), Positives = 69/238 (28%), Gaps = 21/238 (8%)

Query: 9   HKLKNLEALDLSFNNINGTVESQESF-ELNLAKNNIGG---HLLDCLNNMTRLKVLDTSF 64
               +LE L +  N +    E  ES   L+++ N +       +   ++           
Sbjct: 157 ELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRE 216

Query: 65  NQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTE 124
           N+++  +P  I++L     + L ++      P+SS    S  +       +   +     
Sbjct: 217 NRIT-HIPENILSLDPTCTIILEDN------PLSSRIRESLSQQTAQPDYHGPRIYF--- 266

Query: 125 NFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDF 184
           +     Q        D        +  + + Q     E      N+F+  L         
Sbjct: 267 SMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFE-HEEHANTFSAFLDRLSDTVSA 325

Query: 185 LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKN 242
            +            L +     L     +   +     +   S  D   LT+ +L K 
Sbjct: 326 RNTSG-FREQVAAWLEK-----LSASAELRQQSFAVAADATESCEDRVALTWNNLRKT 377

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 50/242 (20%), Positives = 74/242 (30%), Gaps = 29/242 (11%)

Query: 233 TLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYM--NLTRLWFLYLDNN 290
           + T L L  N        +F     L  L  S N    +          T L +L L  N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 291 KFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLL 350
                +    L   QL+ LD  ++ L   +  +                          L
Sbjct: 89  GVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSV-----------------------FL 123

Query: 351 NHGSLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRS-SKLMTLDLR 408
           +  +L  L +S           F+ LSSL  L +  N         +F     L  LDL 
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 409 DNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCF 468
                 +     N  S+L+VL +  N      +  +  L  L V+D S N I  S     
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243

Query: 469 TN 470
            +
Sbjct: 244 QH 245

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.7 bits (192), Expect = 4e-16
 Identities = 54/240 (22%), Positives = 90/240 (37%), Gaps = 17/240 (7%)

Query: 106 LKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLA-GDFPAWILQNNTKLEVL 164
              L L   +N +  L        F     L  L LS N L+     +      T L+ L
Sbjct: 30  ATRLELE--SNKLQSLPHG----VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83

Query: 165 CLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNL 224
            L+ N     +       + L HLD   +N          + L+ L+Y+D+++       
Sbjct: 84  DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 225 PSSIGDMKTLTFLHLSKNNFSGEL-STLFTGCVSLWFLDRSHNNF---HDQIFPKYMNLT 280
                 + +L  L ++ N+F       +FT   +L FLD S           F    +L+
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN---SLS 199

Query: 281 RLWFLYLDNNKFSGKIEDGLLKS-NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKN 339
            L  L + +N F   ++    K  N L+ LD S N +       + +F S L  L +++N
Sbjct: 200 SLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 59/246 (23%), Positives = 90/246 (36%), Gaps = 29/246 (11%)

Query: 36  LNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLS--GSLPSVIVNLASVEYLDLSN---SY 90
           L L  N +        + +T+L  L  S N LS  G          S++YLDLS      
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 92

Query: 91  FEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDF 150
               F         +L+ L     ++N+ Q+   +    F    +L YLD+SH +     
Sbjct: 93  MSSNF-----LGLEQLEHLDFQ--HSNLKQMSEFS---VFLSLRNLIYLDISHTHTR-VA 141

Query: 151 PAWILQNNTKLEVLCLTNNSFTGNLQ------LPHSKHDFLHHLDVSSNNFTGKLPQDKG 204
              I    + LEVL +  NSF  N        L +     L  LD+S      +L     
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN-----LTFLDLSQCQLE-QLSPTAF 195

Query: 205 IILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCV-SLWFLDR 263
             L  L  ++M++N F          + +L  L  S N+              SL FL+ 
Sbjct: 196 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255

Query: 264 SHNNFH 269
           + N+F 
Sbjct: 256 TQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 41/194 (21%), Positives = 70/194 (36%), Gaps = 13/194 (6%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESF----ELNLAKNNIGG-HLLDCLNNMTRLKVLDT 62
                +L+ LDLSFN +     +         L+   +N+          ++  L  LD 
Sbjct: 74  DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 133

Query: 63  SFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLK 122
           S      +   +   L+S+E L ++ + F+  F          L  L LS     + QL 
Sbjct: 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS--QCQLEQLS 191

Query: 123 TENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTG-NLQLPHSK 181
              F     L+     L++SHNN       +  +    L+VL  + N       Q     
Sbjct: 192 PTAFNSLSSLQV----LNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246

Query: 182 HDFLHHLDVSSNNF 195
              L  L+++ N+F
Sbjct: 247 PSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 9/164 (5%)

Query: 307 KELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLS 366
            E+  ++  L+  +P       S    L +  N L+            L  LS+S N LS
Sbjct: 10  TEIRCNSKGLT-SVP---TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 367 GFMTSSFS---LSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQI-NE 422
                S S    +SL +L +  N +  T+ +      +L  LD + +    +    +   
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124

Query: 423 SSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPS 466
             NL  L +   +     +  F  L  L V+ ++ N    +   
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 78.2 bits (193), Expect = 8e-16
 Identities = 51/231 (22%), Positives = 84/231 (36%), Gaps = 11/231 (4%)

Query: 233 TLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNN---FHDQIFPKYMNLTRLWFLYLDN 289
              +L+L +NN     +  F     L  L    N+        F     L  L  L L +
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN---GLASLNTLELFD 132

Query: 290 NKFSGKIEDGLLKS-NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQ 348
           N  +  I  G  +  ++L+EL + NN +   IP +  N    L  L + +      I   
Sbjct: 133 NWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEG 190

Query: 349 LLNH-GSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDL 407
                 +L+ L++    +      +  L  L  L +  N      P +    S L  L +
Sbjct: 191 AFEGLFNLKYLNLGMCNIKDMPNLT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249

Query: 408 RDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHN 458
            ++  S I  +  +  ++L  L L  N L     + F  LR L  + L HN
Sbjct: 250 MNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 60/264 (22%), Positives = 98/264 (37%), Gaps = 43/264 (16%)

Query: 13  NLEALDLSFNNINGTVESQESF-------ELNLAKNNIGGHLLDCLNNMTRLKVLDTSFN 65
           N   L+L  NNI   +   ++F        L L +N+I    +   N +  L  L+   N
Sbjct: 76  NTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133

Query: 66  QLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTEN 125
            L+         L+ +  L L N+  E + P  +      L  L L       L+  +E 
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLG--ELKKLEYISEG 190

Query: 126 FLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFL 185
               F+   +LKYL+L   N+  D P   L     LE L ++ N F              
Sbjct: 191 ---AFEGLFNLKYLNLGMCNIK-DMPN--LTPLVGLEELEMSGNHFP------------- 231

Query: 186 HHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFS 245
              ++   +F G         L  L  + + N++      ++   + +L  L+L+ NN S
Sbjct: 232 ---EIRPGSFHG---------LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

Query: 246 GELSTLFTGCVSLWFLDRSHNNFH 269
                LFT    L  L   HN ++
Sbjct: 280 SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 73.2 bits (180), Expect = 4e-14
 Identities = 46/266 (17%), Positives = 88/266 (33%), Gaps = 42/266 (15%)

Query: 55  TRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSR 114
           +  + L+   N +         +L  +E L L  +       + +    + L  L L   
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELF-- 131

Query: 115 NNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGN 174
           +N +  + +      F+    L+ L L +N +                   + + +F   
Sbjct: 132 DNWLTVIPSG----AFEYLSKLRELWLRNNPIE-----------------SIPSYAFNR- 169

Query: 175 LQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTL 234
             +P      L  LD+        + +     L  L Y+++     + ++P ++  +  L
Sbjct: 170 --VPS-----LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGL 220

Query: 235 TFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNN---FHDQIFPKYMNLTRLWFLYLDNNK 291
             L +S N+F       F G  SL  L   ++         F     L  L  L L +N 
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF---DGLASLVELNLAHNN 277

Query: 292 FSGKIEDGLLKSN-QLKELDMSNNML 316
            S  +   L      L EL + +N  
Sbjct: 278 LS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 69.8 bits (171), Expect = 4e-13
 Identities = 34/185 (18%), Positives = 66/185 (35%), Gaps = 9/185 (4%)

Query: 280 TRLWFLYLDNNKFSGKIEDGLLKS-NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSK 338
           +   +L L  N     I+    +  + L+ L +  N +   I     N  + L  L +  
Sbjct: 75  SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFD 132

Query: 339 NFLKGNIPMQLLNH-GSLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNAL 396
           N+L   IP     +   L+ L +  N +    + +F+ + SL+ L +        I    
Sbjct: 133 NWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191

Query: 397 FRS-SKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDL 455
           F     L  L+L       +    +     L  L + GN+        F  L  L  + +
Sbjct: 192 FEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249

Query: 456 SHNRI 460
            ++++
Sbjct: 250 MNSQV 254

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 9/167 (5%)

Query: 303 SNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSE 362
           SNQ  ++  +   LS  +P       S    L + +N ++        +   L++L +  
Sbjct: 53  SNQFSKVVCTRRGLS-EVP---QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR 108

Query: 363 NCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRS-SKLMTLDLRDNGFSGIISDQI 420
           N +      +F+ L+SL  L +  N L+  IP+  F   SKL  L LR+N    I S   
Sbjct: 109 NSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAF 167

Query: 421 NESSNLRVL-LLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPS 466
           N   +L  L L     LE      F  L  L  ++L    I   +P+
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN 213

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.2 bits (154), Expect = 5e-11
 Identities = 41/219 (18%), Positives = 75/219 (34%), Gaps = 45/219 (20%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQL 67
            + L +L  L+L  N +  TV    +FE                  +++L+ L    N +
Sbjct: 119 FNGLASLNTLELFDNWL--TVIPSGAFE-----------------YLSKLRELWLRNNPI 159

Query: 68  SGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFL 127
                     + S+  LDL            +      LK L L       ++      +
Sbjct: 160 ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG---MCNIK-----DM 211

Query: 128 PTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNS--------FTGNLQLPH 179
           P       L+ L++S N+   +         + L+ L + N+         F G   L  
Sbjct: 212 PNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG---LAS 267

Query: 180 SKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANN 218
                L  L+++ NN +  LP D    L+ L+ + + +N
Sbjct: 268 -----LVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 15/120 (12%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESF-------ELNLAKNNIGGHLLDCLNNMTRLKVL 60
              L NL+ L+L   NI        +        EL ++ N+         + ++ LK L
Sbjct: 192 FEGLFNLKYLNLGMCNIK----DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247

Query: 61  DTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQ 120
               +Q+S    +    LAS+  L+L+++    + P         L  L L   ++N   
Sbjct: 248 WVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHL---HHNPWN 303

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 46/210 (21%), Positives = 76/210 (36%), Gaps = 15/210 (7%)

Query: 233 TLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNF---HDQIFPKYMNLTRLWFLYLDN 289
               + L  N  S   +  F  C +L  L    N         F     L  L  L L +
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF---TGLALLEQLDLSD 89

Query: 290 NKFSGKIEDGLLKS-NQLKELDMSNNMLSGHIPH-WIANFSSYLEVLLMSKNFLKGNIPM 347
           N     ++        +L  L +    L   +        ++ L+ L +  N L+  +P 
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAA-LQYLYLQDNALQ-ALPD 146

Query: 348 QLLNH-GSLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRS-SKLMT 404
                 G+L  L +  N +S     +F  L SL  L + +N ++  +    FR   +LMT
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMT 205

Query: 405 LDLRDNGFSGIISDQINESSNLRVLLLRGN 434
           L L  N  S + ++ +     L+ L L  N
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.5 bits (168), Expect = 5e-13
 Identities = 43/180 (23%), Positives = 71/180 (39%), Gaps = 7/180 (3%)

Query: 285 LYLDNNKFSGKIEDGLLKS-NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKG 343
           ++L  N+ S  +     ++   L  L + +N+L+          +  LE L +S N    
Sbjct: 37  IFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL-LEQLDLSDNAQLR 94

Query: 344 NIPMQLLNH-GSLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRS-S 400
           ++     +  G L  L +    L       F  L++L +LY+Q N L   +P+  FR   
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLG 153

Query: 401 KLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRI 460
            L  L L  N  S +         +L  LLL  N +     + F  L RL  + L  N +
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 43/217 (19%), Positives = 70/217 (32%), Gaps = 25/217 (11%)

Query: 13  NLEALDLSFNNINGTVESQESF-------ELNLAKNNIGGHLLDCLNNMTRLKVLDTSFN 65
             + + L  N I  +     SF        L L  N +          +  L+ LD S N
Sbjct: 33  ASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 66  QLSGSLPS-VIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTE 124
               S+       L  +  L L     +           + L+ L L   +N +  L  +
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQ--DNALQALPDD 147

Query: 125 NFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPH---SK 181
            F     L H    L L  N ++   P    +    L+ L L  N       +       
Sbjct: 148 TFRDLGNLTH----LFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA---HVHPHAFRD 199

Query: 182 HDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANN 218
              L  L + +NN +  LP +    L+ L Y+ + +N
Sbjct: 200 LGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 37/236 (15%), Positives = 71/236 (30%), Gaps = 32/236 (13%)

Query: 55  TRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSR 114
              + +    N++S    +      ++  L L ++        ++    + L+ L L S 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDL-SD 89

Query: 115 NNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGN 174
           N  +  +    F         L  L L    L  +    + +    L+ L L +N+    
Sbjct: 90  NAQLRSVDPATFHGL----GRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-- 142

Query: 175 LQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTL 234
                          +  + F           L  L ++ +  NR       +   + +L
Sbjct: 143 --------------ALPDDTFRD---------LGNLTHLFLHGNRISSVPERAFRGLHSL 179

Query: 235 TFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNN 290
             L L +N  +      F     L  L    NN           L  L +L L++N
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 30/148 (20%), Positives = 55/148 (37%), Gaps = 2/148 (1%)

Query: 325 ANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFS-LSSLVHLYV 383
               +  + + +  N +            +L +L +  N L+    ++F+ L+ L  L +
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 384 QRNDLSGTIPNALFRS-SKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISN 442
             N    ++  A F    +L TL L   G   +        + L+ L L+ N L+    +
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 443 QFCQLRRLGVMDLSHNRINGSIPSCFTN 470
            F  L  L  + L  NRI+      F  
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRG 175

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 37/171 (21%), Positives = 59/171 (34%), Gaps = 16/171 (9%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESF-------ELNLAKNNIGGHLLDCLNNMTRLKVL 60
              L  LE LDLS N    +V+   +F        L+L +  +          +  L+ L
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDP-ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134

Query: 61  DTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQ 120
               N L         +L ++ +L L  +    + P  +      L  L L     N + 
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLH---QNRVA 190

Query: 121 LKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSF 171
               +    F+    L  L L  NNL+   P   L     L+ L L +N +
Sbjct: 191 HVHPH---AFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 76.9 bits (190), Expect = 2e-15
 Identities = 82/480 (17%), Positives = 147/480 (30%), Gaps = 98/480 (20%)

Query: 12  KNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLS--- 68
            ++++LD+    ++                       + L  + + +V+      L+   
Sbjct: 3   LDIQSLDIQCEELSDAR------------------WAELLPLLQQCQVVRLDDCGLTEAR 44

Query: 69  -GSLPSVIVNLASVEYLDLSNSYF--EGTFPISSL--ANHSKLKVLRLSSRNNNMLQLKT 123
              + S +    ++  L+L ++     G   +         K++ L L   N  +     
Sbjct: 45  CKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ--NCCLTGAGC 102

Query: 124 ENFLPTFQLKHDLKYLDLSHNNLAGDFPAWIL-----QNNTKLEVLCLTNNSFTGN---- 174
                T +    L+ L LS N L GD    +L         +LE L L   S +      
Sbjct: 103 GVLSSTLRTLPTLQELHLSDNLL-GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161

Query: 175 --LQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMK 232
               L          L VS+N+       + G+   ++L   + ++              
Sbjct: 162 LASVLRAKPD--FKELTVSNNDI-----NEAGV---RVLCQGLKDSP------------C 199

Query: 233 TLTFLHLSKNNFSGE----LSTLFTGCVSLWFLDRSHNNFHDQ-----IFPKYMNLTRLW 283
            L  L L     + +    L  +     SL  L    N   D              +RL 
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259

Query: 284 FLYLDNNKFSGK----IEDGLLKSNQLKELDMSNNMLSG----HIPHWIANFSSYLEVLL 335
            L++     + K    +   L     LKEL ++ N L       +   +      LE L 
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319

Query: 336 MSKNFLKG----NIPMQLLNHGSLQLLSVSENCL--SGFMTSSFSL----SSLVHLYVQR 385
           +           +    L  +  L  L +S N L  +G       L    S L  L++  
Sbjct: 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379

Query: 386 NDLS----GTIPNALFRSSKLMTLDLRDN-----GFSGIISDQINESSNLRVLLLRGNYL 436
            D+S     ++   L  +  L  LDL +N     G   ++         L  L+L   Y 
Sbjct: 380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 75.8 bits (187), Expect = 5e-15
 Identities = 78/430 (18%), Positives = 141/430 (32%), Gaps = 84/430 (19%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESF-----------ELNLAKNNIGG----HLLDCL- 51
           L  L+  + + L    +  T    +             ELNL  N +G      +L  L 
Sbjct: 24  LPLLQQCQVVRLDDCGL--TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81

Query: 52  NNMTRLKVLDTSFNQLS----GSLPSVIVNLASVEYLDLSNSYF--EGTFPISS--LANH 103
               +++ L      L+    G L S +  L +++ L LS++     G   +    L   
Sbjct: 82  TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ 141

Query: 104 SKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWIL-----QNN 158
            +L+ L+L     ++     E      + K D K L +S+N++  +    +L      + 
Sbjct: 142 CRLEKLQLE--YCSLSAASCEPLASVLRAKPDFKELTVSNNDI-NEAGVRVLCQGLKDSP 198

Query: 159 TKLEVLCLTNNSFTGN------LQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIIL----- 207
            +LE L L +   T +        +       L  L + SN        D G+       
Sbjct: 199 CQLEALKLESCGVTSDNCRDLCGIVASKAS--LRELALGSNKLG-----DVGMAELCPGL 251

Query: 208 ----QKLLYIDMANNRFE----GNLPSSIGDMKTLTFLHLSKNNFSGE-----LSTLFTG 254
                +L  + +          G+L   +   ++L  L L+ N    E       TL   
Sbjct: 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEP 311

Query: 255 CVSLWFLDRSHNNFHDQ----IFPKYMNLTRLWFLYLDNNKFSGK----IEDGLLKSN-Q 305
              L  L     +F                 L  L + NN+        +  GL +    
Sbjct: 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371

Query: 306 LKELDMSNNMLSGHIPHWIANF---SSYLEVLLMSKNFLKGNIPMQLL------NHGSLQ 356
           L+ L +++  +S      +A     +  L  L +S N L G+  +  L          L+
Sbjct: 372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL-GDAGILQLVESVRQPGCLLE 430

Query: 357 LLSVSENCLS 366
            L + +   S
Sbjct: 431 QLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 71.1 bits (175), Expect = 2e-13
 Identities = 70/389 (17%), Positives = 122/389 (31%), Gaps = 73/389 (18%)

Query: 135 DLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGN------LQLPHSKHDFLHHL 188
           D++ LD+    L+    A +L    + +V+ L +   T          L  +    L  L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPA--LAEL 61

Query: 189 DVSSNNFTGKLPQDKGIIL---------QKLLYIDMANNRFE----GNLPSSIGDMKTLT 235
           ++ SN        D G+            K+  + + N        G L S++  + TL 
Sbjct: 62  NLRSNEL-----GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 116

Query: 236 FLHLSKNNFSGE-----LSTLFTGCVSLWFLDRSHNNFHDQ----IFPKYMNLTRLWFLY 286
            LHLS N             L      L  L   + +        +            L 
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176

Query: 287 LDNNKFSGK----IEDGLLKSN-QLKELDMSNNMLSGHIPHWIAN---FSSYLEVLLMSK 338
           + NN  +      +  GL  S  QL+ L + +  ++      +       + L  L +  
Sbjct: 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236

Query: 339 NFLKGN-----IPMQLLNHGSLQLLSVSENCLS--GFMTSSFSL---SSLVHLYVQRNDL 388
           N L         P  L     L+ L + E  ++  G       L    SL  L +  N+L
Sbjct: 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296

Query: 389 SGTIPNALFRS-----SKLMTLDLRDNGFSG----IISDQINESSNLRVLLLRGNYLEGP 439
                  L  +      +L +L ++   F+       S  + ++  L  L +  N LE  
Sbjct: 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356

Query: 440 --------ISNQFCQLRRLGVMDLSHNRI 460
                   +      LR L    L+   +
Sbjct: 357 GVRELCQGLGQPGSVLRVL---WLADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 70/363 (19%), Positives = 117/363 (32%), Gaps = 62/363 (17%)

Query: 3   FLGAGLHKLKNLEALDLSFNNINGT--------VESQESF--ELNLAKNNIG----GHLL 48
            L + L  L  L+ L LS N +           +   +    +L L   ++       L 
Sbjct: 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163

Query: 49  DCLNNMTRLKVLDTSFNQLSGS-----LPSVIVNLASVEYLDLSNSYF--EGTFPISS-L 100
             L      K L  S N ++ +        +  +   +E L L +     +    +   +
Sbjct: 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223

Query: 101 ANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHD--LKYLDLSHNNLAGDFPAWI---L 155
           A+ + L+ L L    +N L       L    L     L+ L +    +       +   L
Sbjct: 224 ASKASLRELALG---SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280

Query: 156 QNNTKLEVLCLTNNSFTGN--------LQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIIL 207
           +    L+ L L  N             L  P  +   L  L V S +FT         +L
Sbjct: 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQ---LESLWVKSCSFTAACCSHFSSVL 337

Query: 208 QK---LLYIDMANNRFEGNLPSSIGDM-----KTLTFLHLSKNNFSGE----LSTLFTGC 255
            +   LL + ++NNR E      +          L  L L+  + S      L+      
Sbjct: 338 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 397

Query: 256 VSLWFLDRSHNNFHDQIFPK-----YMNLTRLWFLYLDNNKFSGKIEDGL---LKSN-QL 306
            SL  LD S+N   D    +           L  L L +  +S ++ED L    K    L
Sbjct: 398 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSL 457

Query: 307 KEL 309
           + +
Sbjct: 458 RVI 460

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 76.7 bits (189), Expect = 3e-15
 Identities = 51/232 (21%), Positives = 82/232 (35%), Gaps = 13/232 (5%)

Query: 233 TLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNN---FHDQIFPKYMNLTRLWFLYLDN 289
               L+L +N         F     L  L  S N+        F     L  L  L L +
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN---GLANLNTLELFD 121

Query: 290 NKFSGKIEDGLLKS-NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQ 348
           N+ +  I +G     ++LKEL + NN +   IP +  N    L  L + +      I   
Sbjct: 122 NRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEG 179

Query: 349 LLNH-GSLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRSSKLMTLD 406
                 +L+ L+++   L      + + L  L  L +  N LS   P +      L  L 
Sbjct: 180 AFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237

Query: 407 LRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHN 458
           +  +    I  +  +   +L  + L  N L     + F  L  L  + L HN
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 74.8 bits (184), Expect = 1e-14
 Identities = 57/264 (21%), Positives = 103/264 (39%), Gaps = 43/264 (16%)

Query: 13  NLEALDLSFNNINGTVESQESF-------ELNLAKNNIGGHLLDCLNNMTRLKVLDTSFN 65
           N   L+L  N I   +    SF        L L++N+I    +   N +  L  L+   N
Sbjct: 65  NTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 66  QLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTEN 125
           +L+       V L+ ++ L L N+  E + P  +      L+ L L       L   +E 
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLG--ELKRLSYISEG 179

Query: 126 FLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFL 185
               F+   +L+YL+L+  NL  + P   L    KL+ L L+ N  +             
Sbjct: 180 ---AFEGLSNLRYLNLAMCNLR-EIPN--LTPLIKLDELDLSGNHLSA------------ 221

Query: 186 HHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFS 245
               +   +F G         L  L  + M  ++ +    ++  ++++L  ++L+ NN +
Sbjct: 222 ----IRPGSFQG---------LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

Query: 246 GELSTLFTGCVSLWFLDRSHNNFH 269
                LFT    L  +   HN ++
Sbjct: 269 LLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.5 bits (178), Expect = 6e-14
 Identities = 51/226 (22%), Positives = 80/226 (35%), Gaps = 35/226 (15%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESF-------ELNLAKNNIGGHLLDCLNNMTRLKVL 60
              L++LE L LS N+I  T+E   +F        L L  N +          +++LK L
Sbjct: 84  FKHLRHLEILQLSRNHIR-TIEIG-AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141

Query: 61  DTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQ 120
               N +          + S+  LDL            +    S L+ L L+      L+
Sbjct: 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA---MCNLR 198

Query: 121 LKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNN--------SFT 172
                 +P       L  LDLS N+L+        Q    L+ L +  +        +F 
Sbjct: 199 -----EIPNLTPLIKLDELDLSGNHLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERNAFD 252

Query: 173 GNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANN 218
               L       L  ++++ NN T  LP D    L  L  I + +N
Sbjct: 253 N---LQS-----LVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.8 bits (171), Expect = 5e-13
 Identities = 51/245 (20%), Positives = 92/245 (37%), Gaps = 28/245 (11%)

Query: 55  TRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSR 114
           T  ++L+   NQ+     +   +L  +E L LS ++   T  I +    + L  L L   
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELF-- 120

Query: 115 NNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNN----- 169
           +N +  +    F+        LK L L +N +    P++       L  L L        
Sbjct: 121 DNRLTTIPNGAFVYL----SKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSY 175

Query: 170 ----SFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLP 225
               +F G   L +     L +L+++  N   ++P      L KL  +D++ N      P
Sbjct: 176 ISEGAFEG---LSN-----LRYLNLAMCNLR-EIPNLTP--LIKLDELDLSGNHLSAIRP 224

Query: 226 SSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFL 285
            S   +  L  L + ++         F    SL  ++ +HNN        +  L  L  +
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284

Query: 286 YLDNN 290
           +L +N
Sbjct: 285 HLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 42/185 (22%), Positives = 65/185 (35%), Gaps = 9/185 (4%)

Query: 280 TRLWFLYLDNNKFSGKIEDGLLKS-NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSK 338
           T    L L  N+    I+    K    L+ L +S N +   I     N  + L  L +  
Sbjct: 64  TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD 121

Query: 339 NFLKGNIPMQLLNH-GSLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNAL 396
           N L   IP     +   L+ L +  N +    + +F+ + SL  L +        I    
Sbjct: 122 NRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180

Query: 397 FRS-SKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDL 455
           F   S L  L+L       I    +     L  L L GN+L       F  L  L  + +
Sbjct: 181 FEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238

Query: 456 SHNRI 460
             ++I
Sbjct: 239 IQSQI 243

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 3/115 (2%)

Query: 354 SLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRS-SKLMTLDLRDNG 411
           + +LL++ EN +     +SF  L  L  L + RN +  TI    F   + L TL+L DN 
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR 123

Query: 412 FSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPS 466
            + I +      S L+ L LR N +E   S  F ++  L  +DL   +    I  
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 15/120 (12%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESF-------ELNLAKNNIGGHLLDCLNNMTRLKVL 60
              L NL  L+L+  N+        +        EL+L+ N++          +  L+ L
Sbjct: 181 FEGLSNLRYLNLAMCNLR----EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236

Query: 61  DTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQ 120
               +Q+     +   NL S+  ++L+++      P         L+ + L   ++N   
Sbjct: 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHL---HHNPWN 292

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.9 bits (187), Expect = 3e-15
 Identities = 62/289 (21%), Positives = 111/289 (38%), Gaps = 43/289 (14%)

Query: 135 DLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNN 194
            +K LDLS+N +        LQ    L+ L LT+N                    +  ++
Sbjct: 53  AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN----------------TIEEDS 95

Query: 195 FTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSI-GDMKTLTFLHLSKNNFSG-ELSTLF 252
           F+          L  L ++D++ N    NL SS    + +LTFL+L  N +     ++LF
Sbjct: 96  FSS---------LGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145

Query: 253 TGCVSLWFLDRSHNNFHDQIFPK-YMNLTRLWFLYLDNNKFSGKIEDGLLKS-NQLKELD 310
           +    L  L   + +   +I  K +  LT L  L +D +      E   LKS   +  L 
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLI 204

Query: 311 MSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQL--------LNHGSLQLLSVSE 362
           +        +     + +S +E L +    L      +L        +   + + + +++
Sbjct: 205 LHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263

Query: 363 NCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRS-SKLMTLDLRDN 410
             L   M     +S L+ L   RN L  ++P+ +F   + L  + L  N
Sbjct: 264 ESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 71.7 bits (176), Expect = 6e-14
 Identities = 44/248 (17%), Positives = 88/248 (35%), Gaps = 22/248 (8%)

Query: 233 TLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHN---NFHDQIFPKYMNLTRLWFLYLDN 289
            +  L LS N  +   ++    CV+L  L  + N      +  F    +L  L  L L  
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS---SLGSLEHLDLSY 109

Query: 290 NKFSGKIEDGLLKS-NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQ 348
           N  S  +     K  + L  L++  N         + +  + L++L +        I  +
Sbjct: 110 NYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168

Query: 349 LLNH-GSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALF-RSSKLMTL 405
                  L+ L +  + L  +   S  S+ ++ HL +        +       +S +  L
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECL 227

Query: 406 DLRDNG--------FSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSH 457
           +LRD           S   ++ + +    R + +    L   +     Q+  L  ++ S 
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSR 286

Query: 458 NRINGSIP 465
           N++  S+P
Sbjct: 287 NQLK-SVP 293

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.0 bits (169), Expect = 6e-13
 Identities = 49/293 (16%), Positives = 101/293 (34%), Gaps = 41/293 (13%)

Query: 55  TRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSR 114
             +K LD S N+++    S +    +++ L L+++    T    S ++   L+ L LS  
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLS-- 108

Query: 115 NNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGN 174
            N +  L +  F P   L      L+L  N         +  + TKL++L + N      
Sbjct: 109 YNYLSNLSSSWFKPLSSLTF----LNLLGNPYKTLGETSLFSHLTKLQILRVGNMD---- 160

Query: 175 LQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTL 234
                          +   +F G         L  L  +++  +  +   P S+  ++ +
Sbjct: 161 -TFTK----------IQRKDFAG---------LTFLEELEIDASDLQSYEPKSLKSIQNV 200

Query: 235 TFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQ--------IFPKYMNLTRLWFLY 286
           + L L        L        S+  L+    +                 +       + 
Sbjct: 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260

Query: 287 LDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKN 339
           + +     ++   L + + L EL+ S N L   +P  I +  + L+ + +  N
Sbjct: 261 ITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 43/283 (15%), Positives = 88/283 (31%), Gaps = 26/283 (9%)

Query: 35  ELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGT 94
            L+L+ N I       L     L+ L  + N ++        +L S+E+LDLS +Y    
Sbjct: 56  SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-N 114

Query: 95  FPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWI 154
              S     S L  L L    N    L   +    F     L+ L + + +         
Sbjct: 115 LSSSWFKPLSSLTFLNLL--GNPYKTLGETSL---FSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 155 LQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYID 214
               T LE L +  +               + HL +        L +    +   +  ++
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLE 228

Query: 215 MANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFP 274
           + +   +    S +   +T + +                   +   +  +  +   Q+  
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKK----------------FTFRNVKITDESLF-QVMK 271

Query: 275 KYMNLTRLWFLYLDNNKFSGKIEDGLLKSN-QLKELDMSNNML 316
               ++ L  L    N+    + DG+      L+++ +  N  
Sbjct: 272 LLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.8 bits (127), Expect = 9e-08
 Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 3/139 (2%)

Query: 35  ELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGT 94
           EL +  +++  +    L ++  +  L     Q    L   +   +SVE L+L ++  + T
Sbjct: 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD-T 236

Query: 95  FPISSLANHSKLKVLRLSS-RNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAW 153
           F  S L+      +++  + RN  +        +        L  L+ S N L    P  
Sbjct: 237 FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDG 295

Query: 154 ILQNNTKLEVLCLTNNSFT 172
           I    T L+ + L  N + 
Sbjct: 296 IFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 40/267 (14%), Positives = 89/267 (33%), Gaps = 48/267 (17%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQL 67
              L +LE LDLS+N +  +  S   F+                  ++ L  L+   N  
Sbjct: 96  FSSLGSLEHLDLSYNYL--SNLSSSWFK-----------------PLSSLTFLNLLGNPY 136

Query: 68  SGSLP--SVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTEN 125
             +L   S+  +L  ++ L + N            A  + L+ L +    +++   + ++
Sbjct: 137 K-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID--ASDLQSYEPKS 193

Query: 126 FLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGN--LQLPH---- 179
                 + H    L L             +   + +E L L +         +L      
Sbjct: 194 LKSIQNVSH----LILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN 248

Query: 180 --SKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSI-GDMKTLTF 236
              K     ++ ++  +    +       +  LL ++ + N+ + ++P  I   + +L  
Sbjct: 249 SLIKKFTFRNVKITDESLFQVMKLLNQ--ISGLLELEFSRNQLK-SVPDGIFDRLTSLQK 305

Query: 237 LHLSKNNFSGELSTLFTGCVSLWFLDR 263
           + L  N +          C  + +L R
Sbjct: 306 IWLHTNPWD-------CSCPRIDYLSR 325

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 5/150 (3%)

Query: 325 ANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFS-LSSLVHLYV 383
           +  +  ++ L +S N +       L    +LQ L ++ N ++     SFS L SL HL +
Sbjct: 48  SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107

Query: 384 QRNDLSGTIPNALFRS-SKLMTLDLRDNGFSGIISDQI-NESSNLRVLLLRGNYLEGPIS 441
             N LS  + ++ F+  S L  L+L  N +  +    + +  + L++L +        I 
Sbjct: 108 SYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 442 NQ-FCQLRRLGVMDLSHNRINGSIPSCFTN 470
            + F  L  L  +++  + +    P    +
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKS 196

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.8 bits (181), Expect = 1e-14
 Identities = 57/294 (19%), Positives = 91/294 (30%), Gaps = 33/294 (11%)

Query: 109 LRLSSRNNNMLQLKTENFLPTFQLKH-----DLKYLDLSHNNLAGDFPAWILQ--NNTKL 161
           L    R+   L  + +      Q         LK L +    +        L+    + L
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 162 EVLCLTNNSFTGN-----LQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMA 216
           + L L N   TG      L+      + L+  +VS       L + +  +   L  + +A
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 217 NNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKY 276
                      +     L+ L LS N   GE   +   C   +                 
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP---------------- 201

Query: 277 MNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLM 336
             L  L          SG          QL+ LD+S+N L         ++ S L  L +
Sbjct: 202 -TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260

Query: 337 SKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSG 390
           S   LK  +P  L     L +L +S N L     S   L  + +L ++ N    
Sbjct: 261 SFTGLKQ-VPKGLPA--KLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 70.7 bits (173), Expect = 1e-13
 Identities = 48/272 (17%), Positives = 89/272 (32%), Gaps = 18/272 (6%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQL 67
           L K  + EA    F +I  ++  +          +        +  ++ L+ L     ++
Sbjct: 48  LLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV 107

Query: 68  SGSLPSVIVNLA--SVEYLDLSNSYFEGTFP-ISSLANHSKLKVLRLSSRNNNMLQLKTE 124
           +G+ P  ++      +  L+L N  +      ++ L    K  +  LS    + L     
Sbjct: 108 TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF--- 164

Query: 125 NFLPTFQLKHDLKYLDLSHNNLAGDFP---AWILQNNTKLEVLCLTNNSFT---GNLQLP 178
                 ++   L  LDLS N   G+     A        L+VL L N       G     
Sbjct: 165 -SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 179 HSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLH 238
            +    L  LD+S N+              +L  ++++    +  +P  +     L+ L 
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGLP--AKLSVLD 280

Query: 239 LSKNNFSGELSTLFTGCVSLWFLDRSHNNFHD 270
           LS N      +        +  L    N F D
Sbjct: 281 LSYNRLDR--NPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 67.2 bits (164), Expect = 1e-12
 Identities = 54/297 (18%), Positives = 84/297 (28%), Gaps = 34/297 (11%)

Query: 154 ILQNNTKLEVLCLTNNSFTGNLQLPH-SKHDFLHHLDVSSNNFTGKLPQDKGIILQ--KL 210
           +      LE L    ++     Q     K   L  L V +     ++      +L    L
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 211 LYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHD 270
             + + N    G  P  + +        L+  N S      +   +  W           
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK--------- 148

Query: 271 QIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFS-- 328
                      L  L +          + +     L  LD+S+N   G      A     
Sbjct: 149 ---------PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199

Query: 329 -SYLEVLLMSKNFLK---GNIPMQLLNHGSLQLLSVSENCLSGF--MTSSFSLSSLVHLY 382
              L+VL +    ++   G           LQ L +S N L       S    S L  L 
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 383 VQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGP 439
           +    L   +P  L   +KL  LDL  N          +E   +  L L+GN     
Sbjct: 260 LSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.8 bits (163), Expect = 2e-12
 Identities = 44/224 (19%), Positives = 73/224 (32%), Gaps = 14/224 (6%)

Query: 7   GLHKLKNLEALDLSFNNI------NGTVESQESFELNLAKNNIGGHLLDCLNN--MTRLK 58
           G+  L+ L   +L             T        L           L  L       LK
Sbjct: 93  GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLK 152

Query: 59  VLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNM 118
           VL  +           +    ++  LDLS++   G   + S     K   L++ +  N  
Sbjct: 153 VLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212

Query: 119 LQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLP 178
           ++  +         +  L+ LDLSHN+L     A      ++L  L L+        Q+P
Sbjct: 213 METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK---QVP 269

Query: 179 HSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEG 222
                 L  LD+S N        D+   L ++  + +  N F  
Sbjct: 270 KGLPAKLSVLDLSYNRLDRNPSPDE---LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.1 bits (161), Expect = 3e-12
 Identities = 45/251 (17%), Positives = 76/251 (30%), Gaps = 20/251 (7%)

Query: 229 GDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFP---KYMNLTRLWFL 285
           G       L            T     +SL  L         +I     + + ++ L  L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 286 YLDNNKFSGKI--EDGLLKSNQLKELDMSNNMLSG---HIPHWIANFSSYLEVLLMSKNF 340
            L+N + +G             L  L++ N   +     +          L+VL +++  
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 341 LKGNIPMQLLNHGSLQLLSVSENCLSG-----FMTSSFSLSSLVHLYVQRN---DLSGTI 392
                  Q+    +L  L +S+N   G              +L  L ++       SG  
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 393 PNALFRSSKLMTLDLRDNGFSGIISDQI-NESSNLRVLLLRGNYLEGPISNQFCQLRRLG 451
                   +L  LDL  N           +  S L  L L    L+        +L  L 
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVL- 279

Query: 452 VMDLSHNRING 462
             DLS+NR++ 
Sbjct: 280 --DLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.4 bits (154), Expect = 3e-11
 Identities = 43/225 (19%), Positives = 74/225 (32%), Gaps = 18/225 (8%)

Query: 260 FLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLK---SNQLKELDMSNNML 316
            L R         F   +    L  L +   +   +I  G L+    + L+EL + N  +
Sbjct: 48  LLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV 107

Query: 317 SGHIPHWIANFS-SYLEVLLMSKNFLKGNIP----MQLLNHGSLQLLSVSENCLSGFMTS 371
           +G  P  +   +   L +L +              +Q      L++LS+++     F   
Sbjct: 108 TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167

Query: 372 SFS-LSSLVHLYVQRNDLSGTIPNA----LFRSSKLMTLDLRDNGF---SGIISDQINES 423
                 +L  L +  N   G           +   L  L LR+ G    SG+ S      
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227

Query: 424 SNLRVLLLRGNYLEGPISNQFCQ-LRRLGVMDLSHNRINGSIPSC 467
             L+ L L  N L        C    +L  ++LS   +   +P  
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.8 bits (170), Expect = 6e-13
 Identities = 45/208 (21%), Positives = 80/208 (38%), Gaps = 23/208 (11%)

Query: 7   GLHKLKNLEALDLSFNNINGTVESQESF----ELNLAKNNIGGHLLDCLNNMTRLKVLDT 62
           G+  L N+  L L+ N +   ++   +      L L +N I    L  L ++ +LK L  
Sbjct: 60  GIQYLPNVTKLFLNGNKLT-DIKPLTNLKNLGWLFLDENKI--KDLSSLKDLKKLKSLSL 116

Query: 63  SFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLK 122
             N +S  + + +V+L  +E L L N+       I+ L+  +KL  L L   +N +  + 
Sbjct: 117 EHNGIS-DI-NGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLE--DNQISDIV 169

Query: 123 TENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKH 182
               L        L+ L LS N+++ D  A  L     L+VL L +           S  
Sbjct: 170 PLAGLTK------LQNLYLSKNHIS-DLRA--LAGLKNLDVLELFSQECLNKPINHQSNL 220

Query: 183 DFLHHLDVSSNNFTGKLPQDKGIILQKL 210
              + +  +  +             +K 
Sbjct: 221 VVPNTVKNTDGSLVTPEIISDDGDYEKP 248

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.8 bits (170), Expect = 6e-13
 Identities = 43/242 (17%), Positives = 93/242 (38%), Gaps = 28/242 (11%)

Query: 7   GLHKLKNLEALDLSFNNINGTVESQESF----ELNLAKNNIGGHLLDCLNNMTRLKVLDT 62
                      +L   ++     +Q       ++    ++I    +  +  +  +  L  
Sbjct: 16  PDDAFAETIKDNLKKKSVT-DAVTQNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFL 72

Query: 63  SFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLK 122
           + N+L+   P  + NL ++ +L L  +  +    +SSL +  KLK L L   +N +  + 
Sbjct: 73  NGNKLTDIKP--LTNLKNLGWLFLDENKIKD---LSSLKDLKKLKSLSLE--HNGISDIN 125

Query: 123 TENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKH 182
               LP       L+ L L +N +  D     L   TKL+ L L +N  + ++  P +  
Sbjct: 126 GLVHLP------QLESLYLGNNKIT-DITV--LSRLTKLDTLSLEDNQIS-DIV-PLAGL 174

Query: 183 DFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKN 242
             L +L +S N+ +  L    G  L+ L  +++ +        +   ++     +  +  
Sbjct: 175 TKLQNLYLSKNHIS-DLRALAG--LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231

Query: 243 NF 244
           + 
Sbjct: 232 SL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.2 bits (153), Expect = 8e-11
 Identities = 47/296 (15%), Positives = 90/296 (30%), Gaps = 53/296 (17%)

Query: 35  ELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGT 94
           E       I    +   +        +     ++         L S++ +  +NS  +  
Sbjct: 3   ETITVSTPIKQ--IFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS- 57

Query: 95  FPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWI 154
             +  +     +  L L+   N +  +K    L       +L +L L  N +  D  +  
Sbjct: 58  --VQGIQYLPNVTKLFLN--GNKLTDIKPLTNLK------NLGWLFLDENKIK-DLSS-- 104

Query: 155 LQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYID 214
           L++  KL+ L L +N  + ++         L  L + +N  T                  
Sbjct: 105 LKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITD----------------- 145

Query: 215 MANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFP 274
                      + +  +  L  L L  N  S ++  L  G   L  L  S N+  D    
Sbjct: 146 ----------ITVLSRLTKLDTLSLEDNQIS-DIVPL-AGLTKLQNLYLSKNHISD--LR 191

Query: 275 KYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSY 330
               L  L  L L + +   K  +          +  ++  L    P  I++   Y
Sbjct: 192 ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDY 245

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.8 bits (113), Expect = 6e-06
 Identities = 43/197 (21%), Positives = 81/197 (41%), Gaps = 22/197 (11%)

Query: 278 NLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSY--LEVLL 335
            L  +  +  +N+     ++ G+     + +L ++ N L+      I   ++   L  L 
Sbjct: 41  ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTD-----IKPLTNLKNLGWLF 93

Query: 336 MSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNA 395
           + +N +K    ++ L    L+ LS+  N +S  +     L  L  LY+  N +  T    
Sbjct: 94  LDENKIKDLSSLKDLK--KLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKI--TDITV 148

Query: 396 LFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLE--GPISNQFCQLRRLGVM 453
           L R +KL TL L DN  S I    +   + L+ L L  N++     ++     L+ L V+
Sbjct: 149 LSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHISDLRALAG----LKNLDVL 202

Query: 454 DLSHNRINGSIPSCFTN 470
           +L          +  +N
Sbjct: 203 ELFSQECLNKPINHQSN 219

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 24/158 (15%), Positives = 46/158 (29%), Gaps = 12/158 (7%)

Query: 7   GLHKLKNLEALDLSFNNINGTVESQESF----ELNLAKNNIGGHLLDCLNNMTRLKVLDT 62
            L +L  L+ L L  N I+  +           L L+KN+I    L  L  +  L VL+ 
Sbjct: 148 VLSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLEL 204

Query: 63  SFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLK 122
              +      +   NL     +  ++        IS   ++ K  V       +      
Sbjct: 205 FSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVK-----WHLPEFTN 259

Query: 123 TENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTK 160
             +F+    +                    + +  +  
Sbjct: 260 EVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVD 297

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.7 bits (105), Expect = 5e-05
 Identities = 30/156 (19%), Positives = 68/156 (43%), Gaps = 12/156 (7%)

Query: 305 QLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENC 364
           +  + ++    ++  +       +S ++ ++ + + +K    +Q L +  +  L ++ N 
Sbjct: 22  ETIKDNLKKKSVTDAVT--QNELNS-IDQIIANNSDIKSVQGIQYLPN--VTKLFLNGNK 76

Query: 365 LSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESS 424
           L+  +    +L +L  L++  N +   + + L    KL +L L  NG S I  + +    
Sbjct: 77  LTD-IKPLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGISDI--NGLVHLP 131

Query: 425 NLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRI 460
            L  L L  N +   I+    +L +L  + L  N+I
Sbjct: 132 QLESLYLGNNKITD-ITV-LSRLTKLDTLSLEDNQI 165

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.6 bits (158), Expect = 5e-12
 Identities = 38/210 (18%), Positives = 77/210 (36%), Gaps = 11/210 (5%)

Query: 233 TLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKY-MNLTRLWFLYLDNNK 291
           +   L L + +     S  F+   ++  +  S +    Q+      NL+++  + + N +
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 292 FSGKIEDGLLKS-NQLKELDMSNNMLSGHIPHWIANFS-SYLEVLLMSKNFLKGNIPMQL 349
               I+   LK    LK L + N  L    P     +S     +L ++ N    +IP+  
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 350 LNH--GSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFR--SSKLMTL 405
                     L +  N  +     +F+ + L  +Y+ +N     I    F    S    L
Sbjct: 151 FQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210

Query: 406 DLRDNGFSGIISDQINESSNLRVLLLRGNY 435
           D+     + + S  +    +L+ L+ R  +
Sbjct: 211 DVSQTSVTALPSKGL---EHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 33/199 (16%), Positives = 72/199 (36%), Gaps = 17/199 (8%)

Query: 78  LASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLK 137
             S + L L  ++   T P  + +N   +  + +S  +  + QL++ +F         + 
Sbjct: 30  PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSI-DVTLQQLESHSFYNL----SKVT 83

Query: 138 YLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPH----SKHDFLHHLDVSSN 193
           ++++ +           L+    L+ L + N         P        D    L+++ N
Sbjct: 84  HIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK---MFPDLTKVYSTDIFFILEITDN 140

Query: 194 NFTGKLPQDKGIILQKLL-YIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELST-L 251
            +   +P +    L      + + NN F  ++     +   L  ++L+KN +   +    
Sbjct: 141 PYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDA 199

Query: 252 FTGCVS-LWFLDRSHNNFH 269
           F G  S    LD S  +  
Sbjct: 200 FGGVYSGPSLLDVSQTSVT 218

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 75/455 (16%), Positives = 144/455 (31%), Gaps = 73/455 (16%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQL 67
             +L  L +LD   ++I                       +  +  +T L  L  + N +
Sbjct: 38  EEQLATLTSLDCHNSSITD---------------------MTGIEKLTGLTKLICTSNNI 76

Query: 68  SGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFL 127
           + +L   +    ++ YL   ++       ++ L   +KL  L       N L     +  
Sbjct: 77  T-TLD--LSQNTNLTYLACDSNKLT-NLDVTPL---TKLTYLNCD---TNKLTKLDVSQN 126

Query: 128 PTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHH 187
           P       L YL+ + N L        + +NT+L  L    N     L +       L  
Sbjct: 127 P------LLTYLNCARNTLT----EIDVSHNTQLTELDCHLNKKITKLDVTPQTQ--LTT 174

Query: 188 LDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGE 247
           LD S N  T +L   +    + L  ++   N     L   +     LTFL  S N     
Sbjct: 175 LDCSFNKIT-ELDVSQ---NKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNK---- 223

Query: 248 LSTL-FTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQL 306
           L+ +  T    L + D S N   +        L++L  L+          E  L  + QL
Sbjct: 224 LTEIDVTPLTQLTYFDCSVNPLTELDV---STLSKLTTLHCIQTDLL---EIDLTHNTQL 277

Query: 307 KELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLS 366
                        +   + + +  L +L      +   + +       L  L ++   L+
Sbjct: 278 IYFQAEGCRKIKELD--VTHNTQ-LYLLDCQAAGIT-ELDLSQNP--KLVYLYLNNTELT 331

Query: 367 GFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNL 426
               S    + L  L      +     + + +   L      +     +  + +  ++N 
Sbjct: 332 ELDVS--HNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETL--TNNS 385

Query: 427 RVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRIN 461
             + +  + L+   +    +    GV D + N I 
Sbjct: 386 LTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTIT 420

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 65.9 bits (161), Expect = 9e-12
 Identities = 70/416 (16%), Positives = 129/416 (31%), Gaps = 52/416 (12%)

Query: 22  NNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASV 81
            + N             A   +          +  L  LD   + ++  +   I  L  +
Sbjct: 9   QSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGL 66

Query: 82  EYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDL 141
             L  +++    T  +S   N   L  L     +N +  L              L YL+ 
Sbjct: 67  TKLICTSNNIT-TLDLSQNTN---LTYLACD--SNKLTNLDVTPL-------TKLTYLNC 113

Query: 142 SHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQ 201
             N L        +  N  L  L    N+ T   ++  S +  L  LD   N    KL  
Sbjct: 114 DTNKLTKL----DVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLDV 166

Query: 202 DKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTL-FTGCVSLWF 260
                  +L  +D + N+        +   K L  L+   NN    ++ L     + L F
Sbjct: 167 TP---QTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNN----ITKLDLNQNIQLTF 216

Query: 261 LDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHI 320
           LD S N   +        LT+L +     N  + +++   L   +L  L      L   I
Sbjct: 217 LDCSSNKLTEIDVT---PLTQLTYFDCSVNPLT-ELDVSTLS--KLTTLHCIQTDLL-EI 269

Query: 321 PHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVH 380
              + + +  +         +K    + + ++  L LL      ++    S      LV+
Sbjct: 270 D--LTHNTQLIYFQAEGCRKIK---ELDVTHNTQLYLLDCQAAGITELDLS--QNPKLVY 322

Query: 381 LYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYL 436
           LY+   +L+  +  +    +KL +L   +          + +   L          
Sbjct: 323 LYLNNTELT-ELDVSHN--TKLKSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.8 bits (153), Expect = 8e-11
 Identities = 73/423 (17%), Positives = 143/423 (33%), Gaps = 51/423 (12%)

Query: 7   GLHKLKNLEALDLSFNNINGTVESQESF--ELNLAKNNIGGHLLDCLNNMTRLKVLDTSF 64
           G+ KL  L  L  + NNI     SQ +    L    N +    LD +  +T+L  L+   
Sbjct: 59  GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTN--LD-VTPLTKLTYLNCDT 115

Query: 65  NQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTE 124
           N+L+    S    L    YL+ + +       ++ +      ++  L    N  +     
Sbjct: 116 NKLTKLDVSQNPLL---TYLNCARN------TLTEIDVSHNTQLTELDCHLNKKITKLDV 166

Query: 125 NFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDF 184
                      L  LD S N +        +  N  L  L    N+ T   +L  +++  
Sbjct: 167 TPQT------QLTTLDCSFNKIT----ELDVSQNKLLNRLNCDTNNIT---KLDLNQNIQ 213

Query: 185 LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNF 244
           L  LD SSN  T ++       L +L Y D + N     L   +  +  LT LH  + + 
Sbjct: 214 LTFLDCSSNKLT-EIDVTP---LTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTD- 265

Query: 245 SGELSTL-FTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKS 303
              L  +  T    L +          ++     + T+L+ L       + +++      
Sbjct: 266 ---LLEIDLTHNTQLIYFQAEGCRKIKELDVT--HNTQLYLLDCQAAGIT-ELDLSQNPK 319

Query: 304 NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSEN 363
             L  L ++N  L+  +   +++ +  L+ L      ++    +  +   +L     +E 
Sbjct: 320 --LVYLYLNNTELT-ELD--VSHNTK-LKSLSCVNAHIQDFSSVGKIP--ALNNNFEAEG 371

Query: 364 CLSGFMTSSFSLSSL-VHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINE 422
                   + + +SL + +     D  G   N       +         +  + +D    
Sbjct: 372 QTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAV 431

Query: 423 SSN 425
           +  
Sbjct: 432 TYT 434

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 45/255 (17%), Positives = 79/255 (30%), Gaps = 25/255 (9%)

Query: 216 ANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPK 275
           A    +     S   + TLT L    ++ +    T       L  L  + NN        
Sbjct: 26  AAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNITTLDLS- 82

Query: 276 YMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLL 335
               T L +L  D+NK +      +    +L  L+   N L+             L  L 
Sbjct: 83  --QNTNLTYLACDSNKLT---NLDVTPLTKLTYLNCDTNKLTKLDVSQNPL----LTYLN 133

Query: 336 MSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNA 395
            ++N L     + + ++  L  L    N     +  +   + L  L    N ++    + 
Sbjct: 134 CARNTLT---EIDVSHNTQLTELDCHLNKKITKLDVT-PQTQLTTLDCSFNKITELDVSQ 189

Query: 396 LFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDL 455
                 L  L+   N  + +    +N++  L  L    N L          L +L   D 
Sbjct: 190 N---KLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLT---EIDVTPLTQLTYFDC 240

Query: 456 SHNRINGSIPSCFTN 470
           S N +     S  + 
Sbjct: 241 SVNPLTELDVSTLSK 255

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 63.7 bits (155), Expect = 3e-11
 Identities = 41/192 (21%), Positives = 70/192 (36%), Gaps = 7/192 (3%)

Query: 280 TRLWFLYLDNNKFSGKIEDGLLKS-NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSK 338
                L     K    I+ G       L+++++S N +   I   + +    L  + + K
Sbjct: 30  RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 339 NFLKGNIPMQLLNH-GSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNAL 396
                 I  +   +  +LQ L +S   +              V L +Q N    TI    
Sbjct: 89  ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 397 FR--SSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMD 454
           F   S + + L L  NG   I +   N +    + L   N LE   ++ F       ++D
Sbjct: 149 FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208

Query: 455 LSHNRINGSIPS 466
           +S  RI+ S+PS
Sbjct: 209 ISRTRIH-SLPS 219

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 37/245 (15%), Positives = 67/245 (27%), Gaps = 27/245 (11%)

Query: 55  TRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSR 114
                L     +L             +E +++S +           +N  KL  +R+  +
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI-EK 88

Query: 115 NNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNN----- 169
            NN+L +  E F         L+YL +S+  +    P     ++ +  +L + +N     
Sbjct: 89  ANNLLYINPEAFQNLPN----LQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHT 143

Query: 170 ----SFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLP 225
               SF G              L ++ N    ++        Q        NN  E    
Sbjct: 144 IERNSFVGLSFE-------SVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPN 195

Query: 226 SSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFL 285
                      L +S+       S        L      +     +  P    L  L   
Sbjct: 196 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL----KKLPTLEKLVALMEA 251

Query: 286 YLDNN 290
            L   
Sbjct: 252 SLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.2 bits (146), Expect = 4e-10
 Identities = 39/235 (16%), Positives = 78/235 (33%), Gaps = 20/235 (8%)

Query: 186 HHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFS 245
                  +  T ++P D   + +  + +     +       +      L  + +S+N+  
Sbjct: 12  RVFLCQESKVT-EIPSD---LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 246 GELST-LFTGCVSLWFLDRSHNN----FHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGL 300
             +   +F+    L  +     N     + + F    NL  L +L + N      + D  
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAF---QNLPNLQYLLISNTGIK-HLPDVH 123

Query: 301 -LKSNQLKELDMSNNMLSGHIPH-WIANFSSYLEVLLMSKNFLKGNIPMQLLNH-GSLQL 357
            + S Q   LD+ +N+    I        S    +L ++KN ++  I     N     +L
Sbjct: 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDEL 182

Query: 358 LSVSENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRS-SKLMTLDLRDN 410
                N L       F   S  V L + R  +  ++P+    +  KL      + 
Sbjct: 183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 44/241 (18%), Positives = 90/241 (37%), Gaps = 28/241 (11%)

Query: 12  KNLEALDLSFNNINGTVESQESF-------ELNLAKNNIGGHL-LDCLNNMTRLKVLDTS 63
           +N   L      +   V  + +F       ++ +++N++   +  D  +N+ +L  +   
Sbjct: 30  RNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 64  -FNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLK 122
             N L    P    NL +++YL +SN+  +   P     +  +  +L +   N N+  ++
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQD-NINIHTIE 145

Query: 123 TENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPH--- 179
             +F+    L  +   L L+ N +  +            E+    NN+     +LP+   
Sbjct: 146 RNSFV---GLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE---ELPNDVF 198

Query: 180 SKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHL 239
                   LD+S       LP      L+KL      N +    LP ++  +  L    L
Sbjct: 199 HGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASL 253

Query: 240 S 240
           +
Sbjct: 254 T 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 35/212 (16%), Positives = 65/212 (30%), Gaps = 31/212 (14%)

Query: 9   HKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLS 68
             L  L  + +   N    +                    +   N+  L+ L  S   + 
Sbjct: 76  SNLPKLHEIRIEKANNLLYINP------------------EAFQNLPNLQYLLISNTGIK 117

Query: 69  GSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHS-KLKVLRLSSRNNNMLQLKTENFL 127
                  ++      LD+ ++    T   +S    S +  +L L+   N + ++    F 
Sbjct: 118 HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN--KNGIQEIHNSAFN 175

Query: 128 PTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHH 187
            T      L  L+LS NN   + P  +    +   +L ++         LP    + L  
Sbjct: 176 GT-----QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH---SLPSYGLENLKK 227

Query: 188 LDVSSNNFTGKLPQDKGIILQKLLYIDMANNR 219
           L   S     KLP  +   L  L+   +    
Sbjct: 228 LRARSTYNLKKLPTLEK--LVALMEASLTYPS 257

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.5 bits (150), Expect = 3e-11
 Identities = 26/168 (15%), Positives = 67/168 (39%), Gaps = 18/168 (10%)

Query: 10  KLKNLEALDLSFNNINGTVESQESF----ELNLAKNNIGGHLLDCLNNMTRLKVLDTSFN 65
           ++ +L  + L+  N+   +   E      +L +   +      + ++ ++ L+ L     
Sbjct: 42  QMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGK 98

Query: 66  QLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTEN 125
            ++      +  L S+  LD+S+S  + +  ++ +    K+  + LS            +
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDS-ILTKINTLPKVNSIDLSYNG------AITD 151

Query: 126 FLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTG 173
            +P   L   LK L++  + +  D+    +++  KL  L   + +  G
Sbjct: 152 IMPLKTLPE-LKSLNIQFDGVH-DYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.4 bits (142), Expect = 4e-10
 Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 15/146 (10%)

Query: 7   GLHKLKNLEALDLSFNNINGTVESQESF----ELNLAKNNIGGHLLDCLNNMTRLKVLDT 62
           G+    N++ L ++  +                L +   ++    +  L+ +T L +LD 
Sbjct: 61  GIEYAHNIKDLTINNIHAT-NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 63  SFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLK 122
           S +    S+ + I  L  V  +DLS +       I  L    +LK L +    + +   +
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITD--IMPLKTLPELKSLNIQ--FDGVHDYR 175

Query: 123 TENFLPTFQLKHDLKYLDLSHNNLAG 148
                P       L  L      + G
Sbjct: 176 GIEDFP------KLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 27/159 (16%), Positives = 61/159 (38%), Gaps = 9/159 (5%)

Query: 136 LKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNF 195
           L Y+ L++ N+  D     ++    ++ L + N   T    +    +  L  L +   + 
Sbjct: 46  LTYITLANINVT-DLTG--IEYAHNIKDLTINNIHATNYNPISGLSN--LERLRIMGKDV 100

Query: 196 TGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGC 255
           T     +    L  L  +D++++  + ++ + I  +  +  + LS N    ++  L    
Sbjct: 101 TSDKIPNLSG-LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL-KTL 158

Query: 256 VSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSG 294
             L  L+   +  HD  +    +  +L  LY  +    G
Sbjct: 159 PELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 6/133 (4%)

Query: 185 LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNF 244
           L ++ +++ N T     +       +  + + N        + I  +  L  L +   + 
Sbjct: 46  LTYITLANINVTDLTGIEY---AHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDV 100

Query: 245 SGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSN 304
           + +     +G  SL  LD SH+   D I  K   L ++  + L  N     I   L    
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLP 159

Query: 305 QLKELDMSNNMLS 317
           +LK L++  + + 
Sbjct: 160 ELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 19/138 (13%), Positives = 47/138 (34%), Gaps = 5/138 (3%)

Query: 278 NLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMS 337
               +  L ++N   +      +   + L+ L +    ++      ++  +S L +L +S
Sbjct: 64  YAHNIKDLTINNIHAT-NYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTS-LTLLDIS 120

Query: 338 KNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALF 397
            +    +I  ++     +  + +S N     +    +L  L  L +Q + +       + 
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG--IE 178

Query: 398 RSSKLMTLDLRDNGFSGI 415
              KL  L        G 
Sbjct: 179 DFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 18/108 (16%), Positives = 41/108 (37%), Gaps = 2/108 (1%)

Query: 354 SLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFS 413
           +++ L+++    +        LS+L  L +   D++      L   + L  LD+  +   
Sbjct: 67  NIKDLTINNIHATN-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 414 GIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRIN 461
             I  +IN    +  + L  N     I      L  L  +++  + ++
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVH 172

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 60/370 (16%), Positives = 111/370 (30%), Gaps = 100/370 (27%)

Query: 14  LEALDLSFNNI--------------NGTVESQESFELNLAKNNIGG----HLLDCLNNMT 55
           +E   L  + I              + +V+     E+ L+ N IG      L + + +  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVK-----EIVLSGNTIGTEAARWLSENIASKK 60

Query: 56  RLKVLDTSFNQLS----------GSLPSVIVNLASVEYLDLSNSYF--EGTFPISS-LAN 102
            L++ + S                 L   ++    +  + LS++ F      P+   L+ 
Sbjct: 61  DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120

Query: 103 HSKLKVLRLSSRNNNM---------LQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAW 153
           H+ L+ L L   NN +           L+        +    L+ +    N L  +    
Sbjct: 121 HTPLEHLYLH--NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL-ENGSMK 177

Query: 154 ----ILQNNTKLEVLCLTNNSFT-----GNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKG 204
                 Q++  L  + +  N          L    +    L  LD+  N FT       G
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT-----HLG 232

Query: 205 IILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGE----LSTLFTGCV--SL 258
                              L  ++     L  L L+    S      +   F+      L
Sbjct: 233 SS----------------ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 276

Query: 259 WFLDRSHNNFHD---QIFPKYM--NLTRLWFLYLDNNKFSGKIEDG--------LLKSNQ 305
             L   +N       +     +   +  L FL L+ N+FS   E+         +  +  
Sbjct: 277 QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS---EEDDVVDEIREVFSTRG 333

Query: 306 LKELDMSNNM 315
             ELD  ++M
Sbjct: 334 RGELDELDDM 343

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 51/317 (16%), Positives = 92/317 (29%), Gaps = 62/317 (19%)

Query: 57  LKVLDTSFNQLSG----SLPSVIVNLASVEYLDLSNSYF--EGTFPISS-LANHSKLKVL 109
           ++      + ++     S+ +V++   SV+ + LS +    E    +S  +A+   L++ 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 110 RLSSRNNNMLQLKT----ENFLPTFQLKHDLKYLDLSHNNLAGDFPAWI---LQNNTKLE 162
             S      ++ +        L        L  + LS N         +   L  +T LE
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 163 VLCLTNNSFT-------------GNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGII--- 206
            L L NN                  +         L  +    N        +  +    
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE-----NGSMKEWA 180

Query: 207 -----LQKLLYIDMANNRF-----EGNLPSSIGDMKTLTFLHLSKNNFSGE----LSTLF 252
                 + L  + M  N       E  L   +   + L  L L  N F+      L+   
Sbjct: 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240

Query: 253 TGCVSLWFLDRSHNNFHD-------QIFPKYMNLTRLWFLYLDNNKFSGKIEDGL---LK 302
               +L  L  +               F K  N+  L  L L  N+        L   + 
Sbjct: 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIELDAVRTLKTVID 299

Query: 303 SN--QLKELDMSNNMLS 317
                L  L+++ N  S
Sbjct: 300 EKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 52/331 (15%), Positives = 97/331 (29%), Gaps = 73/331 (22%)

Query: 136 LKYLDLSHNNLAGDFPAWI---LQNNTKLEVLCLTNNSFTGN--------LQLPHSKHDF 184
           ++   L  + +  +    +   L  +  ++ + L+ N+            +         
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIA----SKKD 61

Query: 185 LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNF 244
           L   + S + FTG++  +    L+ LL               ++     L  + LS N F
Sbjct: 62  LEIAEFS-DIFTGRVKDEIPEALRLLL--------------QALLKCPKLHTVRLSDNAF 106

Query: 245 SGE----LSTLFTGCVSLWFLDRSHNNFHDQ-------------IFPKYMNLTRLWFLYL 287
                  L    +    L  L   +N    Q             +  K  N   L  +  
Sbjct: 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166

Query: 288 DNNKFSGK----IEDGLLKSNQLKELDMSNNMLSGH-IPHWIANF---SSYLEVLLMSKN 339
             N+                  L  + M  N +    I H +         L+VL +  N
Sbjct: 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN 226

Query: 340 FLKGNIPMQ-----LLNHGSLQLLSVSENCLS-------GFMTSSFSLSSLVHLYVQRND 387
               ++        L +  +L+ L +++  LS           S      L  L +Q N+
Sbjct: 227 TF-THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285

Query: 388 LSGTIPNALFRS-----SKLMTLDLRDNGFS 413
           +       L          L+ L+L  N FS
Sbjct: 286 IELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 53/296 (17%), Positives = 91/296 (30%), Gaps = 63/296 (21%)

Query: 224 LPSSIGDMKTLTFLHLSKNNFSGE----LSTLFTGCVSLWFLDRSHNNFHDQIFPKY--- 276
           + + + +  ++  + LS N    E    LS        L   + S               
Sbjct: 24  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 83

Query: 277 -------MNLTRLWFLYLDNNKFSGK----IEDGLLKSNQLKELDMSNN----------- 314
                  +   +L  + L +N F       + D L K   L+ L + NN           
Sbjct: 84  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 143

Query: 315 -MLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLL-----NHGSLQLLSVSENCLSGF 368
             L     +  A  +  L  ++  +N L  N  M+       +H  L  + + +N +   
Sbjct: 144 RALQELAVNKKAKNAPPLRSIICGRNRL-ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 202

Query: 369 MTSSF------SLSSLVHLYVQRNDLSGT----IPNALFRSSKLMTLDLRDNGFSG---- 414
                          L  L +Q N  +      +  AL     L  L L D   S     
Sbjct: 203 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262

Query: 415 IISDQINESSN--LRVLLLRGNYLEGP--------ISNQFCQLRRLGVMDLSHNRI 460
            + D  ++  N  L+ L L+ N +E          I  +   L  L   +L+ NR 
Sbjct: 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL---ELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 50/271 (18%), Positives = 80/271 (29%), Gaps = 63/271 (23%)

Query: 1   MLFLGAGLHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVL 60
           +  L   L K   L  + LS N                        L+D L+  T L+ L
Sbjct: 83  LRLLLQALLKCPKLHTVRLSDNAFG---------------PTAQEPLIDFLSKHTPLEHL 127

Query: 61  DTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQ 120
               N L    P     +A      L               N   L+ +       N L+
Sbjct: 128 YLHNNGLG---PQAGAKIARA----LQELA-----VNKKAKNAPPLRSIICG---RNRLE 172

Query: 121 LK-TENFLPTFQLKHDLKYLDLSHNNL----AGDFPAWILQNNTKLEVLCLTNNSFTGN- 174
               + +  TFQ    L  + +  N +            L    +L+VL L +N+FT   
Sbjct: 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG 232

Query: 175 -----LQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIIL----------QKLLYIDMANNR 219
                + L    +  L  L ++    +      +G               L  + +  N 
Sbjct: 233 SSALAIALKSWPN--LRELGLNDCLLS-----ARGAAAVVDAFSKLENIGLQTLRLQYNE 285

Query: 220 FEGNLPSSIGD-----MKTLTFLHLSKNNFS 245
            E +   ++       M  L FL L+ N FS
Sbjct: 286 IELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 57/350 (16%), Positives = 107/350 (30%), Gaps = 64/350 (18%)

Query: 48  LDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLK 107
           +     +     +    + ++        +L  +  L    +       I  +   + L 
Sbjct: 12  IFPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT---IEGVQYLNNLI 66

Query: 108 VLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLT 167
            L L   +N +  L     L        +  L+LS N L        +     ++ L LT
Sbjct: 67  GLELK--DNQITDLAPLKNLT------KITELELSGNPLKNVSA---IAGLQSIKTLDLT 115

Query: 168 NNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSS 227
           +   T    L    +  L  L +  N  T                             S 
Sbjct: 116 STQITDVTPLAGLSN--LQVLYLDLNQITN---------------------------ISP 146

Query: 228 IGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYL 287
           +  +  L +L +     S +L+ L      L  L    N   D       +L  L  ++L
Sbjct: 147 LAGLTNLQYLSIGNAQVS-DLTPL-ANLSKLTTLKADDNKISD--ISPLASLPNLIEVHL 202

Query: 288 DNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNI-- 345
            NN+ S      L  ++ L  + ++N          I N   +    L+  N +KG    
Sbjct: 203 KNNQISD--VSPLANTSNLFIVTLTNQT--------ITNQPVFYNNNLVVPNVVKGPSGA 252

Query: 346 ---PMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTI 392
              P  + ++G+    +++ N  S     S++ +  V         SGT+
Sbjct: 253 PIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSVTFKNTTVPFSGTV 302

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.9 bits (143), Expect = 8e-10
 Identities = 50/247 (20%), Positives = 88/247 (35%), Gaps = 31/247 (12%)

Query: 7   GLHKLKNLEALDLSFNNINGTVESQESF----ELNLAKNNIGGHLLDCLNNMTRLKVLDT 62
               L  +  L      +  T+E  +       L L  N I    L  L N+T++  L+ 
Sbjct: 36  TQADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQITD--LAPLKNLTKITELEL 92

Query: 63  SFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLK 122
           S N L     S I  L S++ LDL+++       ++ LA  S L+VL L    N +  + 
Sbjct: 93  SGNPLKN--VSAIAGLQSIKTLDLTSTQITD---VTPLAGLSNLQVLYLD--LNQITNIS 145

Query: 123 TENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKH 182
               L        L+YL + +  ++ D     L N +KL  L   +N  +    L    +
Sbjct: 146 PLAGLTN------LQYLSIGNAQVS-DLTP--LANLSKLTTLKADDNKISDISPLASLPN 196

Query: 183 DFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKN 242
             L  + + +N  +   P         L  + + N          +     L   ++ K 
Sbjct: 197 --LIEVHLKNNQISDVSPLAN---TSNLFIVTLTNQTITNQ---PVFYNNNLVVPNVVKG 248

Query: 243 NFSGELS 249
                ++
Sbjct: 249 PSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 41/243 (16%), Positives = 86/243 (35%), Gaps = 30/243 (12%)

Query: 7   GLHKLKNLEALDLSFNNINGTVESQESF----ELNLAKNNIGGHLLDCLNNMTRLKVLDT 62
               L N   +    +N+     +Q        L+     +    ++ +  +  L  L+ 
Sbjct: 14  PDPALANAIKIAAGKSNVTD-TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLEL 70

Query: 63  SFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLK 122
             NQ++    + + NL  +  L+LS +  +    +S++A    +K L L+  +  +  + 
Sbjct: 71  KDNQITD--LAPLKNLTKITELELSGNPLKN---VSAIAGLQSIKTLDLT--STQITDVT 123

Query: 123 TENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKH 182
               L       +L+ L L  N +  +     L   T L+ L + N   +    L +   
Sbjct: 124 PLAGLS------NLQVLYLDLNQIT-NISP--LAGLTNLQYLSIGNAQVSDLTPLANLSK 174

Query: 183 DFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKN 242
             L  L    N  +   P      L  L+ + + NN+      S + +   L  + L+  
Sbjct: 175 --LTTLKADDNKISDISPLAS---LPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQ 227

Query: 243 NFS 245
             +
Sbjct: 228 TIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 48/251 (19%), Positives = 94/251 (37%), Gaps = 28/251 (11%)

Query: 7   GLHKLKNLEALDLSFNNINGTVESQESF----ELNLAKNNIGGHLLDCLNNMTRLKVLDT 62
           G+  L NL  L+L  N I   +   ++     EL L+ N +    +  +  +  +K LD 
Sbjct: 58  GVQYLNNLIGLELKDNQIT-DLAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDL 114

Query: 63  SFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLK 122
           +  Q++    + +  L++++ L L  +       IS LA  + L+ L +   N  +  L 
Sbjct: 115 TSTQITD--VTPLAGLSNLQVLYLDLNQITN---ISPLAGLTNLQYLSIG--NAQVSDLT 167

Query: 123 TENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKH 182
               L        L  L    N ++ D     L +   L  + L NN  +    L  +  
Sbjct: 168 PLANLSK------LTTLKADDNKIS-DISP--LASLPNLIEVHLKNNQISDVSPL--ANT 216

Query: 183 DFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKN 242
             L  + +++   T +       ++   +    +        P++I D  T    +L+ N
Sbjct: 217 SNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIA---PATISDNGTYASPNLTWN 273

Query: 243 NFSGELSTLFT 253
             S   +  +T
Sbjct: 274 LTSFINNVSYT 284

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 40/185 (21%), Positives = 75/185 (40%), Gaps = 18/185 (9%)

Query: 278 NLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFS--SYLEVLL 335
           +L  +  L       +  IE G+   N L  L++ +N ++      +A     + +  L 
Sbjct: 39  DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITD-----LAPLKNLTKITELE 91

Query: 336 MSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNA 395
           +S N LK N+   +    S++ L ++   ++     +  LS+L  LY+  N ++   P  
Sbjct: 92  LSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTPLA-GLSNLQVLYLDLNQITNISP-- 146

Query: 396 LFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDL 455
           L   + L  L + +   S +    +   S L  L    N +   IS     L  L  + L
Sbjct: 147 LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHL 202

Query: 456 SHNRI 460
            +N+I
Sbjct: 203 KNNQI 207

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 44/186 (23%), Positives = 63/186 (33%), Gaps = 32/186 (17%)

Query: 135 DLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNN 194
               LDLSHNNL+     W     T L  L L++N                    +SS  
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN----------------FISSEA 83

Query: 195 FTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSI-GDMKTLTFLHLSKNNFSGELSTLFT 253
           F           +  L Y+D+++N     L   +  D++ L  L L  N+        F 
Sbjct: 84  FVP---------VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE 133

Query: 254 GCVSLWFLDRSHNN---FHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGL--LKSNQLKE 308
               L  L  S N    F  ++      L +L  L L +NK        L  L +     
Sbjct: 134 DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193

Query: 309 LDMSNN 314
           L + NN
Sbjct: 194 LYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 43/175 (24%), Positives = 68/175 (38%), Gaps = 27/175 (15%)

Query: 13  NLEALDLSFNNINGTVESQESF-------ELNLAKNNIGGHLLDCLNNMTRLKVLDTSFN 65
               LDLS NN+   + ++ +         L L+ N++     +    +  L+ LD S N
Sbjct: 40  YTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 66  QLSGSLPS-VIVNLASVEYLDLSNSYFEGTFPISSLANH-----SKLKVLRLSSRNNNML 119
            L  +L   +  +L ++E L L N+       I  +  +     ++L+ L LS   N + 
Sbjct: 99  HLH-TLDEFLFSDLQALEVLLLYNN------HIVVVDRNAFEDMAQLQKLYLS--QNQIS 149

Query: 120 QLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKL--EVLCLTNNSFT 172
           +   E      +L   L  LDLS N L    P   LQ         L L NN   
Sbjct: 150 RFPVELIKDGNKLPK-LMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 37/171 (21%), Positives = 68/171 (39%), Gaps = 13/171 (7%)

Query: 307 KELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHG--SLQLLSVSENC 364
             L  S   L  ++P    +  SY  +L +S N L   +  +       +L  L +S N 
Sbjct: 21  NILSCSKQQLP-NVP---QSLPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNH 75

Query: 365 LSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRS-SKLMTLDLRDNGFSGIISDQINE 422
           L+   + +F  + +L +L +  N L  T+   LF     L  L L +N    +  +   +
Sbjct: 76  LNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED 134

Query: 423 SSNLRVLLLRGNYLEGPISNQFC---QLRRLGVMDLSHNRINGSIPSCFTN 470
            + L+ L L  N +            +L +L ++DLS N++     +    
Sbjct: 135 MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK 185

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 8e-07
 Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 13/147 (8%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESF-------ELNLAKNNIGGHLLDCLNNMTRLKVL 60
             +L NL +L LS N++N  + S+ +F        L+L+ N++        +++  L+VL
Sbjct: 60  PTRLTNLHSLLLSHNHLN-FISSE-AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117

Query: 61  DTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQ 120
               N +     +   ++A ++ L LS +     FP+  + + +KL  L L   ++N L+
Sbjct: 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176

Query: 121 -LKTENFLPTFQLKHDLKYLDLSHNNL 146
            L   +             L L +N L
Sbjct: 177 KLPLTDLQKLPAWVK--NGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 39/160 (24%), Positives = 59/160 (36%), Gaps = 8/160 (5%)

Query: 303 SNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNH-GSLQLLSVS 361
            +    LD+S+N LS     W     + L  LL+S N L   I  +      +L+ L +S
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96

Query: 362 ENCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRS-SKLMTLDLRDNGFSGIISD- 418
            N L       FS L +L  L +  N +   +    F   ++L  L L  N  S    + 
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155

Query: 419 --QINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLS 456
               N+   L +L L  N L+        +L       L 
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 43/242 (17%), Positives = 93/242 (38%), Gaps = 28/242 (11%)

Query: 7   GLHKLKNLEALDLSFNNINGTVESQESF----ELNLAKNNIGGHLLDCLNNMTRLKVLDT 62
                      +L   ++     +Q       ++    ++I    +  +  +  +  L  
Sbjct: 19  SDDAFAETIKDNLKKKSVT-DAVTQNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFL 75

Query: 63  SFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLK 122
           + N+L+   P  + NL ++ +L L  +  +    +SSL +  KLK L L   +N +  + 
Sbjct: 76  NGNKLTDIKP--LANLKNLGWLFLDENKVKD---LSSLKDLKKLKSLSLE--HNGISDIN 128

Query: 123 TENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKH 182
               LP       L+ L L +N +  D     L   TKL+ L L +N  + ++  P +  
Sbjct: 129 GLVHLP------QLESLYLGNNKIT-DITV--LSRLTKLDTLSLEDNQIS-DIV-PLAGL 177

Query: 183 DFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKN 242
             L +L +S N+ +  L    G  L+ L  +++ +        +   ++     +  +  
Sbjct: 178 TKLQNLYLSKNHIS-DLRALAG--LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

Query: 243 NF 244
           + 
Sbjct: 235 SL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 43/194 (22%), Positives = 77/194 (39%), Gaps = 23/194 (11%)

Query: 7   GLHKLKNLEALDLSFNNINGTVESQESF----ELNLAKNNIGGHLLDCLNNMTRLKVLDT 62
           G+  L N+  L L+ N +   ++   +      L L +N +    L  L ++ +LK L  
Sbjct: 63  GIQYLPNVTKLFLNGNKLT-DIKPLANLKNLGWLFLDENKV--KDLSSLKDLKKLKSLSL 119

Query: 63  SFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLK 122
             N +  S  + +V+L  +E L L N+       I+ L+  +KL  L L   +N +  + 
Sbjct: 120 EHNGI--SDINGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLE--DNQISDIV 172

Query: 123 TENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKH 182
               L        L+ L LS N+++ D  A  L     L+VL L +           S  
Sbjct: 173 PLAGLTK------LQNLYLSKNHIS-DLRA--LAGLKNLDVLELFSQECLNKPINHQSNL 223

Query: 183 DFLHHLDVSSNNFT 196
              + +  +  +  
Sbjct: 224 VVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 54/261 (20%), Positives = 105/261 (40%), Gaps = 34/261 (13%)

Query: 7   GLHKLKNLEALDLSFNNINGTVESQESF----ELNLAKNNIGGHLLDCLNNMTRLKVLDT 62
             ++L +++ +  + ++I  +V+  +      +L L  N +    +  L N+  L  L  
Sbjct: 41  TQNELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGNKLTD--IKPLANLKNLGWLFL 97

Query: 63  SFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLK 122
             N++     S + +L  ++ L L ++       I+ L +  +L+ L L   NN +  + 
Sbjct: 98  DENKVKDL--SSLKDLKKLKSLSLEHNGISD---INGLVHLPQLESLYLG--NNKITDIT 150

Query: 123 TENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKH 182
             + L        L  L L  N ++ D     L   TKL+ L L+ N  +    L   K+
Sbjct: 151 VLSRLT------KLDTLSLEDNQIS-DIVP--LAGLTKLQNLYLSKNHISDLRALAGLKN 201

Query: 183 DFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNL--PSSIGDMKTLTFLHLS 240
             L  L++ S         +K I  Q  L +       +G+L  P  I D       ++ 
Sbjct: 202 --LDVLELFSQECL-----NKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVK 254

Query: 241 KNN--FSGELSTLFTGCVSLW 259
            +   F+ E+S +F   V++ 
Sbjct: 255 WHLPEFTNEVSFIFYQPVTIG 275

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 46/254 (18%), Positives = 81/254 (31%), Gaps = 27/254 (10%)

Query: 77  NLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDL 136
             A     +L            +    + +  +  +  N+++  ++   +LP      ++
Sbjct: 22  AFAETIKDNLKKKSVTD---AVTQNELNSIDQIIAN--NSDIKSVQGIQYLP------NV 70

Query: 137 KYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFT 196
             L L+ N L    P   L N   L  L L  N       L   K   L  L +  N  +
Sbjct: 71  TKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKDLSSLKDLKK--LKSLSLEHNGIS 125

Query: 197 GKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCV 256
                     L +L  + + NN+      + +  +  L  L L  N  S ++  L  G  
Sbjct: 126 DINGLVH---LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIVPL-AGLT 178

Query: 257 SLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNML 316
            L  L  S N+  D        L  L  L L + +   K  +          +  ++  L
Sbjct: 179 KLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

Query: 317 SGHIPHWIANFSSY 330
               P  I++   Y
Sbjct: 237 VT--PEIISDDGDY 248

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.9 bits (135), Expect = 7e-09
 Identities = 44/205 (21%), Positives = 61/205 (29%), Gaps = 34/205 (16%)

Query: 233 TLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKF 292
             T LHLS+N               L  L+                L  L  L L +N+ 
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQL 89

Query: 293 SGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNH 352
              +         L  LD+S N L+                          ++P+  L  
Sbjct: 90  Q-SLPLLGQTLPALTVLDVSFNRLT--------------------------SLPLGALRG 122

Query: 353 -GSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRS-SKLMTLDLRD 409
            G LQ L +  N L             L  L +  N+L+  +P  L      L TL L++
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 181

Query: 410 NGFSGIISDQINESSNLRVLLLRGN 434
           N     I      S  L    L GN
Sbjct: 182 NSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 42/191 (21%), Positives = 66/191 (34%), Gaps = 19/191 (9%)

Query: 55  TRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSR 114
               +L  S N L     + ++    +  L+L  +       ++ L     L VL     
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA------ELTKLQVDGTLPVLGTLDL 84

Query: 115 NNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGN 174
           ++N LQ    +     Q    L  LD+S N L    P   L+   +L+ L L  N     
Sbjct: 85  SHNQLQ----SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-- 137

Query: 175 LQLPHSKHDFLH---HLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDM 231
             LP            L +++NN T +LP      L+ L  + +  N     +P      
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS 194

Query: 232 KTLTFLHLSKN 242
             L F  L  N
Sbjct: 195 HLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 36/161 (22%), Positives = 56/161 (34%), Gaps = 6/161 (3%)

Query: 306 LKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCL 365
              L +S N+L            + L  L + +  L        L    L  L +S N L
Sbjct: 33  TTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVDGTL--PVLGTLDLSHNQL 89

Query: 366 SGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRS-SKLMTLDLRDNGFSGIISDQINESS 424
                   +L +L  L V  N L+ ++P    R   +L  L L+ N    +    +  + 
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148

Query: 425 NLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIP 465
            L  L L  N L    +     L  L  + L  N +  +IP
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP 188

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 42/174 (24%), Positives = 60/174 (34%), Gaps = 31/174 (17%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESF-------ELNLAKNNIGGHLLDCLNNMTRLKVL 60
           L     L  L+L    +       +          L+L+ N +   L      +  L VL
Sbjct: 51  LMPYTRLTQLNLDRAEL----TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVL 105

Query: 61  DTSFNQLSGSLPS-VIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNML 119
           D SFN+L+ SLP   +  L  ++ L L  +  + T P   L    KL+ L L    NN L
Sbjct: 106 DVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSL---ANNNL 160

Query: 120 QLKTENFLPTFQLKHDLKYLDLSHNNL----AGDFPAWILQNNTKLEVLCLTNN 169
                          +L  L L  N+L     G F       +  L    L  N
Sbjct: 161 TELPAG---LLNGLENLDTLLLQENSLYTIPKGFF------GSHLLPFAFLHGN 205

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 50/243 (20%), Positives = 85/243 (34%), Gaps = 33/243 (13%)

Query: 7   GLHKLKNLEALDLSFNNINGTVESQESF----ELNLAKNNIGGHLLDCLNNMTRLKVLDT 62
               L N    +L   ++   + SQ+        N   +NI    L  +   T LK L  
Sbjct: 14  PDPGLANAVKQNLGKQSVT-DLVSQKELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHL 70

Query: 63  SFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLK 122
           S NQ+S    S + +L  +E L ++ +       + +L       + RL   NN +    
Sbjct: 71  SHNQISD--LSPLKDLTKLEELSVNRN------RLKNLNGIPSACLSRLFLDNNELRDTD 122

Query: 123 TENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKH 182
           +   L        L+ L + +N L        L   +KLEVL L  N  T    L   K 
Sbjct: 123 SLIHLKN------LEILSIRNNKLK-SIVM--LGFLSKLEVLDLHGNEITNTGGLTRLKK 173

Query: 183 DFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNL--PSSIGDMKTLTFLHLS 240
             ++ +D++          ++ +  Q  LYI       +G    P  I +  +     + 
Sbjct: 174 --VNWIDLTGQKCV-----NEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVL 226

Query: 241 KNN 243
              
Sbjct: 227 WEL 229

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 42/229 (18%), Positives = 77/229 (33%), Gaps = 31/229 (13%)

Query: 187 HLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGD-MKTLTFLHLSKNNFS 245
           +LD+S N     L         +L  +D++    +  +       +  L+ L L+ N   
Sbjct: 32  NLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 246 GELSTLFTGCVSLWFLDRSHNNFHDQIFPKYM--NLTRLWFLYLDNNKFSGKIEDGLLKS 303
                 F+G  SL  L     N        +   +L  L  L + +N            +
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 304 -NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSE 362
              L+ LD+S+N +   I          + +L +S                    L +S 
Sbjct: 148 LTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLS--------------------LDLSL 186

Query: 363 NCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRS-SKLMTLDLRDN 410
           N ++     +F    L  L +  N L  ++P+ +F   + L  + L  N
Sbjct: 187 NPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 50/223 (22%), Positives = 79/223 (35%), Gaps = 21/223 (9%)

Query: 55  TRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSR 114
              K LD SFN L         +   ++ LDLS    + T    +  + S L  L L+  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT-- 84

Query: 115 NNNMLQLKTENFLP--TFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFT 172
             N +Q      L    F     L+ L     NLA     + + +   L+ L + +N   
Sbjct: 85  -GNPIQ-----SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ 137

Query: 173 GNLQLPH--SKHDFLHHLDVSSNNFTGKLPQDKGIILQKL----LYIDMANNRFEGNLPS 226
            + +LP   S    L HLD+SSN     +      +L ++    L +D++ N     +  
Sbjct: 138 -SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQP 194

Query: 227 SIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFH 269
                  L  L L  N        +F    SL  +    N + 
Sbjct: 195 GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 42/193 (21%), Positives = 72/193 (37%), Gaps = 28/193 (14%)

Query: 9   HKLKNLEALDLSFNNINGTVESQESF-------ELNLAKNNIGGHLLDCLNNMTRLKVLD 61
                L+ LDLS   I        ++        L L  N I    L   + ++ L+ L 
Sbjct: 49  FSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106

Query: 62  TSFNQLSGSLPS-VIVNLASVEYLDLSNSY-----FEGTFPISSLANHSKLKVLRLSSRN 115
                L+ SL +  I +L +++ L+++++          F  S+L N   L+ L LS  +
Sbjct: 107 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYF--SNLTN---LEHLDLS--S 158

Query: 116 NNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNL 175
           N +  +   +     Q+      LDLS N +         +   +L+ L L  N      
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK-EIRLKELALDTNQLK--- 213

Query: 176 QLPHSKHDFLHHL 188
            +P    D L  L
Sbjct: 214 SVPDGIFDRLTSL 226

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 38/189 (20%), Positives = 66/189 (34%), Gaps = 34/189 (17%)

Query: 285 LYLDNNKFSGKIEDGLLKS-NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKG 343
           L L  N     +      S  +L+ LD+S   +   I        S+L  L+++ N    
Sbjct: 33  LDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN---- 86

Query: 344 NIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRS-SKL 402
                        + S++    SG       LSSL  L     +L+ ++ N        L
Sbjct: 87  ------------PIQSLALGAFSG-------LSSLQKLVAVETNLA-SLENFPIGHLKTL 126

Query: 403 MTLDLRDNGFSGIISDQINES-SNLRVLLLRGNYLEGPISNQFCQLRRLGVM----DLSH 457
             L++  N        +   + +NL  L L  N ++         L ++ ++    DLS 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 458 NRINGSIPS 466
           N +N  I  
Sbjct: 187 NPMN-FIQP 194

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 34/167 (20%), Positives = 57/167 (34%), Gaps = 9/167 (5%)

Query: 303 SNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSE 362
                            IP    N     + L +S N L+        +   LQ+L +S 
Sbjct: 6   VVPNITYQCMELNFY-KIP---DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR 61

Query: 363 NCLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRS-SKLMTLDLRDNGFSGIISDQI 420
             +      ++  LS L  L +  N +  ++    F   S L  L   +   + + +  I
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPI 120

Query: 421 NESSNLRVLLLRGNYL-EGPISNQFCQLRRLGVMDLSHNRINGSIPS 466
                L+ L +  N +    +   F  L  L  +DLS N+I  SI  
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYC 166

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 84/508 (16%), Positives = 155/508 (30%), Gaps = 145/508 (28%)

Query: 1   MLFLGAGLHKLKNLEALDLSFNNINGTVESQESFE---LNLAKNNIGGHLLDCLNNMTRL 57
           +L  G+G    K   ALD+  +     V+ +  F+   LNL   N    +L+ L  +  L
Sbjct: 158 VL--GSG----KTWVALDVCLSY---KVQCKMDFKIFWLNLKNCNSPETVLEMLQKL--L 206

Query: 58  KVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSL-------ANHSKL---- 106
             +D ++   S    ++ + + S++  +L        +    L       A         
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQA-ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265

Query: 107 -KVLRLSSRNNNMLQLKTENFLPTFQLKH---DLKYLDLSHNNLAGDFPAWILQNNTKLE 162
            K+L L++R   +      +FL      H   D   + L+ + +      ++      L 
Sbjct: 266 CKIL-LTTRFKQVT-----DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319

Query: 163 VLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKL-------LYIDM 215
              LT N    ++ +  S  D L   D   +    KL       L  L       ++  +
Sbjct: 320 REVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 216 ANNRFEGNLPSSI-----GDMKT------LTFLH----LSKNNFSGELSTLFTGCVSLWF 260
           +      ++P+ +      D+        +  LH    + K      +S       S++ 
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-----SIYL 433

Query: 261 LDRSHNN----FHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNML 316
             +         H  I   Y N+ + +    D++       D    S             
Sbjct: 434 ELKVKLENEYALHRSIVDHY-NIPKTF----DSDDLIPPYLDQYFYS------------- 475

Query: 317 SGHIPHWIANFSSYLEVLLMSK-----NFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTS 371
             HI H + N      + L         FL+  I                          
Sbjct: 476 --HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI-------------------------- 507

Query: 372 SFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTL-DLRDNGFSGIISDQINESSNLRVLL 430
                        R+D   T  NA    S L TL  L+   +   I D   +   L   +
Sbjct: 508 -------------RHD--STAWNA--SGSILNTLQQLKF--YKPYICDNDPKYERLVNAI 548

Query: 431 LRGNYLEGP----ISNQFCQLRRLGVMD 454
           L  ++L       I +++  L R+ +M 
Sbjct: 549 L--DFLPKIEENLICSKYTDLLRIALMA 574

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 59/369 (15%), Positives = 106/369 (28%), Gaps = 72/369 (19%)

Query: 4   LGAGLHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCL-NNMTRLKVLDT 62
           +         + +LDLS NN+        S             L+    N    +  L+ 
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNL-----YSISTV----------ELIQAFANTPASVTSLNL 58

Query: 63  SFNQLSGSLPSVI-----VNLASVEYLDLSNSYF--EGTFPISSL--ANHSKLKVLRLSS 113
           S N L       +        A+V  L+LS ++   + +  +     A    + VL L  
Sbjct: 59  SGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLG- 117

Query: 114 RNNNMLQLKTENFLPTF--QLKHDLKYLDLSHNNLAGDFPAWIL-----QNNTKLEVLCL 166
              N    K+ +        L   +  L+L  N+L G   +  L          +  L L
Sbjct: 118 --WNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL-GIKSSDELIQILAAIPANVNSLNL 174

Query: 167 TNNSFTGN--------LQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQ----KLLYID 214
             N+            L    +    +  LD+S+N    K   +   I       ++ ++
Sbjct: 175 RGNNLASKNCAELAKFLASIPAS---VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN 231

Query: 215 MANNRFEG----NLPSSIGDMKTLTFLHLSKNNFSG-------ELSTLFTGCVSLWFLDR 263
           +  N   G    NL      +K L  ++L  +            L   F     +  +D+
Sbjct: 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291

Query: 264 SHNNFHDQ--------IFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSN--QLKELDMSN 313
           +    H          I            L            +    +   +L+E   + 
Sbjct: 292 NGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTC 351

Query: 314 NMLSGHIPH 322
             L  H  H
Sbjct: 352 KPLLEHHHH 360

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 8/161 (4%)

Query: 278 NLTRLWFLYLDNNKFSGKIEDGLLKS-NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLM 336
            LT+L  LYL++NK    +  G+ K    L+ L +++N L   +P  + +    L  L +
Sbjct: 59  RLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRL 116

Query: 337 SKNFLKGNIPMQLLNH-GSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPN 394
            +N LK ++P ++ +    L  LS+  N L       F  L+SL  L +  N L   +P 
Sbjct: 117 DRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPE 174

Query: 395 ALFRS-SKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGN 434
             F   ++L TL L +N    +     +    L++L L+ N
Sbjct: 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 41/188 (21%), Positives = 73/188 (38%), Gaps = 28/188 (14%)

Query: 285 LYLDNNKFSGKIEDGLLKS-NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKG 343
           L L +NK S  +         +L+ L +++N L   +P  I      LE L ++ N    
Sbjct: 42  LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN---- 95

Query: 344 NIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRS-SKL 402
                       +L ++              L +L  L + RN L  ++P  +F S +KL
Sbjct: 96  ------------KLQALPIGVFDQ-------LVNLAELRLDRNQLK-SLPPRVFDSLTKL 135

Query: 403 MTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRING 462
             L L  N    +     ++ ++L+ L L  N L+      F +L  L  + L +N++  
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195

Query: 463 SIPSCFTN 470
                F +
Sbjct: 196 VPEGAFDS 203

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 44/193 (22%), Positives = 72/193 (37%), Gaps = 19/193 (9%)

Query: 55  TRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSR 114
              K LD   N+LS         L  +  L L+++  + T P         L+ L ++  
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95

Query: 115 NNNMLQLKTENFLPT--FQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFT 172
                +L+    LP   F    +L  L L  N L    P  +  + TKL  L L  N   
Sbjct: 96  -----KLQA---LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ 146

Query: 173 GNLQLPHSKHDFLH---HLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIG 229
               LP    D L     L + +N    ++P+     L +L  + + NN+ +     +  
Sbjct: 147 ---SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202

Query: 230 DMKTLTFLHLSKN 242
            ++ L  L L +N
Sbjct: 203 SLEKLKMLQLQEN 215

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 6/111 (5%)

Query: 6   AGLHKLKNLEALDLSFNNINGTVESQESF----ELNLAKNNIGGHLLDCLNNMTRLKVLD 61
           A          LDL    I        +      ++ + N I    LD    + RLK L 
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLL 70

Query: 62  TSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLS 112
            + N++      +   L  +  L L+N+       +  LA+   L  L + 
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 10/117 (8%)

Query: 274 PKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSS--YL 331
            +Y N  R   L L   K    IE+     +Q   +D S+N +       +  F     L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-----LDGFPLLRRL 66

Query: 332 EVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF--SLSSLVHLYVQRN 386
           + LL++ N +             L  L ++ N L          SL SL +L + RN
Sbjct: 67  KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 3/87 (3%)

Query: 278 NLTRLWFLYLDNNKFSGKIEDGLLKS-NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLM 336
               L  LY++N +    +E   L+   +L+ L +  + L   +     +F+  L  L +
Sbjct: 29  GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNL 87

Query: 337 SKNFLKGNIPMQLLNHGSLQLLSVSEN 363
           S N L+ ++  + +   SLQ L +S N
Sbjct: 88  SFNALE-SLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 8/108 (7%)

Query: 65  NQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTE 124
              +      +    ++  L + N        +  L    +L+ L +     + L+    
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV---KSGLRFVAP 73

Query: 125 NFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFT 172
           +    F     L  L+LS N L     +W       L+ L L+ N   
Sbjct: 74  D---AFHFTPRLSRLNLSFNALE--SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 3/108 (2%)

Query: 162 EVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFE 221
            + C  + +      LP +++  L  L + +      L       L +L  + +  +   
Sbjct: 12  GLRCTRDGALDSLHHLPGAEN--LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 222 GNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFH 269
              P +      L+ L+LS N           G +SL  L  S N  H
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 13/86 (15%), Positives = 24/86 (27%), Gaps = 17/86 (19%)

Query: 125 NFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNN--------SFTGNLQ 176
           + L       +L  L + +           L+   +L  L +  +        +F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF--- 78

Query: 177 LPHSKHDFLHHLDVSSNNFTGKLPQD 202
            P      L  L++S N     L   
Sbjct: 79  TPR-----LSRLNLSFNALE-SLSWK 98

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 23/128 (17%), Positives = 41/128 (32%), Gaps = 10/128 (7%)

Query: 344 NIPMQLLNHGSLQLLSVSEN-CLSGFMTSSFS-LSSLVHLYVQRNDLSGTIPNALFRS-S 400
           +    L    +L  L +     L          L  L +L + ++ L   +    F    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 401 KLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRI 460
           +L  L+L  N    +    + +  +L+ L+L GN L     +  C LR L   +      
Sbjct: 81  RLSRLNLSFNALESLSWKTV-QGLSLQELVLSGNPL-----HCSCALRWLQRWEEEGLGG 134

Query: 461 NGSIPSCF 468
                   
Sbjct: 135 VPEQKLQC 142

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 7/107 (6%)

Query: 10  KLKNLEALDLSFNNINGTVESQESF----ELNLAKNNIGGHLLDCLNNMTRLKVLDTSFN 65
            ++ L  LD   +N          F     L+L    +    +  L  + +LK L+ S N
Sbjct: 25  AVRELV-LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELSEN 81

Query: 66  QLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLS 112
           ++ G L  +   L ++ +L+LS +  +    +  L     LK L L 
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 13/144 (9%)

Query: 275 KYMNLTRLWFLYLDNNKFS-GKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSS--YL 331
           +      +  L LDN K + GKIE    +   L+ L + N  L       ++N      L
Sbjct: 19  RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-----VSNLPKLPKL 73

Query: 332 EVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF--SLSSLVHLYVQRN--- 386
           + L +S+N + G + M      +L  L++S N L    T      L  L  L +      
Sbjct: 74  KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

Query: 387 DLSGTIPNALFRSSKLMTLDLRDN 410
           +L+    +      +L  LD  D 
Sbjct: 134 NLNDYRESVFKLLPQLTYLDGYDR 157

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 6   AGLHKLKNLEALDLSFNNINGTVESQESF-----ELNLAKNNIGG-HLLDCLNNMTRLKV 59
           + L KL  L+ L+LS N I G ++           LNL+ N +     L+ L  +  LK 
Sbjct: 65  SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS 124

Query: 60  LDTSFN---QLSGSLPSVIVNLASVEYLD 85
           LD        L+    SV   L  + YLD
Sbjct: 125 LDLFNCEVTNLNDYRESVFKLLPQLTYLD 153

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.7 bits (105), Expect = 5e-05
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 22/106 (20%)

Query: 7   GLHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQ 66
            L +L  +  LDLS N +                      L   L  +  L+VL  S N 
Sbjct: 458 HLEQLLLVTHLDLSHNRLR--------------------ALPPALAALRCLEVLQASDNA 497

Query: 67  LSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLS 112
           L  ++   + NL  ++ L L N+  + +  I  L +  +L +L L 
Sbjct: 498 LE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 46/256 (17%), Positives = 87/256 (33%), Gaps = 37/256 (14%)

Query: 112 SSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSF 171
           S +   +L+ + E +         L   +LS            L++  +L+ L   N   
Sbjct: 327 SQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQ--SELESCKELQELEPENKWC 384

Query: 172 TGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDM 231
              + L     D L +   +   F+      K +   +  Y+D   ++F         + 
Sbjct: 385 LLTIILLMRALDPLLYEKETLQYFS----TLKAVDPMRAAYLDDLRSKFLLENSVLKMEY 440

Query: 232 KTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNK 291
             +  LHL+  + +            L  L+                L  +  L L +N+
Sbjct: 441 ADVRVLHLAHKDLT-----------VLCHLE---------------QLLLVTHLDLSHNR 474

Query: 292 FSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKG-NIPMQLL 350
               +   L     L+ L  S+N L  ++   +AN    L+ LL+  N L+       L+
Sbjct: 475 LR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPR-LQELLLCNNRLQQSAAIQPLV 530

Query: 351 NHGSLQLLSVSENCLS 366
           +   L LL++  N L 
Sbjct: 531 SCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 27/270 (10%), Positives = 69/270 (25%), Gaps = 15/270 (5%)

Query: 199 LPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSL 258
           L + +   +   +++              +     +  L L  +     +        + 
Sbjct: 236 LGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNR 295

Query: 259 WFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKS--------NQLKELD 310
                  +     +  +    T        +++    +     +          QL   +
Sbjct: 296 PSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCE 355

Query: 311 MSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMT 370
           +S    +  +   + +     E+   +K  L   I + +     L     +    S    
Sbjct: 356 LSVEKST-VLQSELESCKELQELEPENKWCLL-TIILLMRALDPLLYEKETLQYFSTLKA 413

Query: 371 SSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLL 430
                    +L   R+             + +  L L     + +    + +   +  L 
Sbjct: 414 VDPM--RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLD 469

Query: 431 LRGNYLEGPISNQFCQLRRLGVMDLSHNRI 460
           L  N L   +      LR L V+  S N +
Sbjct: 470 LSHNRLRA-LPPALAALRCLEVLQASDNAL 498

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 8/109 (7%)

Query: 10  KLKNLEALDLSFNNIN-----GTVESQESFE-LNLAKNNIGGHLLDCLNNMTRLKVLDTS 63
              +++ L L  +  N     G  +  E  E L+     +    +  L  + +LK L+ S
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKKLELS 72

Query: 64  FNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLS 112
            N++SG L  +     ++ +L+LS +  +    I  L     LK L L 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 10/107 (9%)

Query: 285 LYLDNNKFS-GKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSS--YLEVLLMSKNFL 341
           L LDN++ + GK+E    +  +L+ L   N  L+      IAN      L+ L +S N +
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-----SIANLPKLNKLKKLELSDNRV 76

Query: 342 KGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF--SLSSLVHLYVQRN 386
            G + +      +L  L++S N +    T      L +L  L +   
Sbjct: 77  SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 9/89 (10%)

Query: 6   AGLHKLKNLEALDLSFNNINGTVESQESF-----ELNLAKNNIGG-HLLDCLNNMTRLKV 59
           A L KL  L+ L+LS N ++G +E           LNL+ N I     ++ L  +  LK 
Sbjct: 58  ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117

Query: 60  LDTSFN---QLSGSLPSVIVNLASVEYLD 85
           LD        L+    +V   L  + YLD
Sbjct: 118 LDLFNCEVTNLNDYRENVFKLLPQLTYLD 146

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 30/154 (19%), Positives = 50/154 (32%), Gaps = 32/154 (20%)

Query: 285 LYLDNNKFSGKIEDGLLKS-NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKG 343
           + L+ N     I  G      +L+ +D+SNN +S                          
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-------------------------- 69

Query: 344 NIPMQLLNH-GSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRS-S 400
            +         SL  L +  N ++    S F  L SL  L +  N ++  +    F+   
Sbjct: 70  ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLH 128

Query: 401 KLMTLDLRDNGFSGIISDQINESSNLRVLLLRGN 434
            L  L L DN    I     +    ++ + L  N
Sbjct: 129 NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 25/137 (18%), Positives = 40/137 (29%), Gaps = 23/137 (16%)

Query: 58  KVLDTSFNQLSGSLPSVIVNLASVEYLDLSN----SYFEGTFPISSLANHSKLKVLRLSS 113
             +    N +    P        +  +DLSN          F    L +   L  L L  
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF--QGLRS---LNSLVL-- 87

Query: 114 RNNNMLQLKTENFLP--TFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSF 171
              N +       LP   F+    L+ L L+ N +         Q+   L +L L +N  
Sbjct: 88  -YGNKIT-----ELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKL 140

Query: 172 TGNLQLPHSKHDFLHHL 188
                +       L  +
Sbjct: 141 Q---TIAKGTFSPLRAI 154

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 34/140 (24%), Positives = 51/140 (36%), Gaps = 14/140 (10%)

Query: 35  ELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPS-VIVNLASVEYLDLSNSYFEG 93
           E+ L +N I        +   +L+ +D S NQ+S  L       L S+  L L  +    
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 94  TFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLP--TFQLKHDLKYLDLSHNNLAGDFP 151
             P S       L++L L   N N  ++     L    FQ  H+L  L L  N L     
Sbjct: 94  ELPKSLFEGLFSLQLLLL---NAN--KINC---LRVDAFQDLHNLNLLSLYDNKLQT-IA 144

Query: 152 AWILQNNTKLEVLCLTNNSF 171
                    ++ + L  N F
Sbjct: 145 KGTFSPLRAIQTMHLAQNPF 164

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 35/161 (21%), Positives = 62/161 (38%), Gaps = 30/161 (18%)

Query: 4   LGAGLHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTS 63
           + A L  LK  + L LS NNI   + S                    L+ M  L++L   
Sbjct: 40  MDATLSTLKACKHLALSTNNI-EKISS--------------------LSGMENLRILSLG 78

Query: 64  FNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKT 123
            N +   + ++     ++E L +S +       +S +     L+VL +S  NN +     
Sbjct: 79  RNLIK-KIENLDAVADTLEELWISYNQIAS---LSGIEKLVNLRVLYMS--NNKITNWGE 132

Query: 124 ENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVL 164
            + L        L+ L L+ N L  D+      +  ++EV+
Sbjct: 133 IDKLAAL---DKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 23/111 (20%), Positives = 52/111 (46%), Gaps = 11/111 (9%)

Query: 7   GLHKLKNLEALDLSFNNINGTVESQESF-----ELNLAKNNIGGHLLDCLNNMTRLKVLD 61
            L  ++NL  L L  N I   +E+ ++      EL ++ N I    L  +  +  L+VL 
Sbjct: 65  SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQI--ASLSGIEKLVNLRVLY 121

Query: 62  TSFNQLSGSLPSV--IVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLR 110
            S N+++ +   +  +  L  +E L L+ +     +  ++  +  +++V++
Sbjct: 122 MSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 37/189 (19%), Positives = 66/189 (34%), Gaps = 34/189 (17%)

Query: 11  LKNLEALDLSFNNI---------NGTVESQESF-ELNLAKNNIGG----HLLDCLNNMTR 56
           L +L  L+L+   +               + +  E+NLA   +       LL       R
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVF---LR 127

Query: 57  LKVLDTSFNQLS----GSLPSVI-VNLASVEYLDLSNSYF--EGTFPISS-LANHSKLKV 108
            + L    N L       L  ++  +   +  L LSN+     G   +   LA ++ +  
Sbjct: 128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTH 187

Query: 109 LRLSSRNNNMLQLKTENFL-PTFQLKHDLKYLDLSHNNLAGDFPAW----ILQNNTKLEV 163
           L L    +  L  +    L         L+ L++++N   GD  A       + +  LE+
Sbjct: 188 LSLL---HTGLGDEGLELLAAQLDRNRQLQELNVAYNGA-GDTAALALARAAREHPSLEL 243

Query: 164 LCLTNNSFT 172
           L L  N  +
Sbjct: 244 LHLYFNELS 252

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 20/144 (13%)

Query: 188 LDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGD-MKTLTFLHLSKNNFSG 246
           LD+ S      L       L KL ++++  N+ +  L + + D +  L  L L+ N  + 
Sbjct: 40  LDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLAS 97

Query: 247 ELSTLFTGCVSLWFLDRSHNNFHDQI-------FPKYMNLTRLWFLYLDNNKFSGKIEDG 299
               +F     L  L    N    Q+       F +   LT+L  L L+ N+    I  G
Sbjct: 98  LPLGVFDHLTQLDKLYLGGN----QLKSLPSGVFDR---LTKLKELRLNTNQLQ-SIPAG 149

Query: 300 LL-KSNQLKELDMSNNMLSGHIPH 322
              K   L+ L +S N L   +PH
Sbjct: 150 AFDKLTNLQTLSLSTNQLQS-VPH 172

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	470
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.96
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.72
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.7
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.69
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.68
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.63
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.63
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.63
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.62
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.62
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.59
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.54
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.54
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.54
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.52
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.51
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.47
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.45
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.41
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.39
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.37
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.35
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.33
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.2
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.11
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.89
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.86
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.75
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.74
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.5
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.48
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.46
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.97
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.86
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.84
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.83

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.3e-54  Score=439.30  Aligned_cols=455  Identities=31%  Similarity=0.414  Sum_probs=356.6

Q ss_pred             ccCCCcCceeeccCCCCCCccc---cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEE
Q 046000            8 LHKLKNLEALDLSFNNINGTVE---SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYL   84 (470)
Q Consensus         8 l~~~~~L~~L~ls~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L   84 (470)
                      +.++++|++|++++|.+.+..+   +++|++|++++|.+.+.+|. ++++++|++|++++|.+.+..|..+..+++|++|
T Consensus       174 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  252 (768)
T 3rgz_A          174 SDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL  252 (768)
T ss_dssp             TTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEE
T ss_pred             hccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEE
Confidence            6677778888887777665443   67777777777777766665 7777777777777777776777777777777777


Q ss_pred             eccCccCcCccChhhhccccccceecccCCCCcc-ccccc------------------cCCCCcccccCcccEEEccCcc
Q 046000           85 DLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNM-LQLKT------------------ENFLPTFQLKHDLKYLDLSHNN  145 (470)
Q Consensus        85 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~------------------~~~~~~~~~~~~L~~L~l~~~~  145 (470)
                      ++++|.+.+..+..   .+++|++|++++|.+.. .....                  ...+..+..+++|++|++++|.
T Consensus       253 ~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~  329 (768)
T 3rgz_A          253 NISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN  329 (768)
T ss_dssp             ECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE
T ss_pred             ECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc
Confidence            77777766544421   55566666666554431 00000                  0223345555666666666666


Q ss_pred             ccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCC-cccEEeccCCcccCCCCcchhh-hhccCceeeccCCccCCC
Q 046000          146 LAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHD-FLHHLDVSSNNFTGKLPQDKGI-ILQKLLYIDMANNRFEGN  223 (470)
Q Consensus       146 i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~  223 (470)
                      +.+.+|...+..+++|+.|++++|.+.+..+..+..++ +|++|++++|.+.+..+..... .++.|++|++++|.+.+.
T Consensus       330 l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  409 (768)
T 3rgz_A          330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK  409 (768)
T ss_dssp             EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE
T ss_pred             ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc
Confidence            66666665555666777777776666655555555554 6777777777666555544332 146788888888888777


Q ss_pred             CchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCC
Q 046000          224 LPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKS  303 (470)
Q Consensus       224 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~  303 (470)
                      .|..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.+++++|.+.+..+..+..+
T Consensus       410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l  489 (768)
T 3rgz_A          410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC  489 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred             cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcC
Confidence            88889999999999999999888888888999999999999999988888888899999999999999998888889999


Q ss_pred             CCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccC-ccccc----------
Q 046000          304 NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSG-FMTSS----------  372 (470)
Q Consensus       304 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~----------  372 (470)
                      ++|+.|++++|++.+.+|.++..+.. +++|++++|.+.+.+|..+..+++|+.|++++|.+.. +|...          
T Consensus       490 ~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~  568 (768)
T 3rgz_A          490 TNLNWISLSNNRLTGEIPKWIGRLEN-LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN  568 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTT-CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred             CCCCEEEccCCccCCcCChHHhcCCC-CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence            99999999999999899999888877 9999999999998999999999999999999998762 22211          


Q ss_pred             ------------------------------------------------------------cccCcccEEEccCCcccccC
Q 046000          373 ------------------------------------------------------------FSLSSLVHLYVQRNDLSGTI  392 (470)
Q Consensus       373 ------------------------------------------------------------~~~~~L~~L~l~~~~l~~~~  392 (470)
                                                                                  ..+++|+.|++++|++++.+
T Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i  648 (768)
T 3rgz_A          569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI  648 (768)
T ss_dssp             TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred             ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence                                                                        12467999999999999999


Q ss_pred             ccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccCCC
Q 046000          393 PNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSC  467 (470)
Q Consensus       393 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~  467 (470)
                      |..+..+++|+.|++++|++++.+|+.++.+++|+.|+|++|++++.+|..+.+++.|++|++++|+++|.+|+.
T Consensus       649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred             CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999974

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.4e-53  Score=434.67  Aligned_cols=451  Identities=31%  Similarity=0.405  Sum_probs=368.7

Q ss_pred             cccccCCCcCceeeccCCCCCCc-------cccccccccccccccCCCCchHhh-hcCCCCcEEEccCCccccccchh--
Q 046000            5 GAGLHKLKNLEALDLSFNNINGT-------VESQESFELNLAKNNIGGHLLDCL-NNMTRLKVLDTSFNQLSGSLPSV--   74 (470)
Q Consensus         5 ~~~l~~~~~L~~L~ls~~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~i~~~~~~~--   74 (470)
                      |+.++++++|++|||++|.+.+.       ..+++|++|++++|.+.+..|..+ .++++|++|++++|.+.+..+..  
T Consensus        93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  172 (768)
T 3rgz_A           93 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV  172 (768)
T ss_dssp             CCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHH
T ss_pred             chhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhh
Confidence            35666777777777777766532       225667777777777665555554 66777777777777776665555  


Q ss_pred             -hhcCcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchH
Q 046000           75 -IVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAW  153 (470)
Q Consensus        75 -~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~  153 (470)
                       +.++++|++|++++|.+.+..+   +..+++|++|++++|.+.       ...+.+..+++|++|++++|.+.+.++..
T Consensus       173 ~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~-------~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  242 (768)
T 3rgz_A          173 LSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFS-------TGIPFLGDCSALQHLDISGNKLSGDFSRA  242 (768)
T ss_dssp             HTTCCTTCCEEECCSSEEESCCB---CTTCTTCCEEECCSSCCC-------SCCCBCTTCCSCCEEECCSSCCCSCHHHH
T ss_pred             hhccCCCCCEEECCCCcccccCC---cccCCcCCEEECcCCcCC-------CCCcccccCCCCCEEECcCCcCCCcccHH
Confidence             5667777777777777765544   266777888888777654       22334677788999999999888555554


Q ss_pred             hhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCC
Q 046000          154 ILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKT  233 (470)
Q Consensus       154 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~  233 (470)
                       +..+++|++|++++|.+.+..+..  .+++|++|++++|.+.+.+|..++..+++|++|++++|.+.+..|..|+.+++
T Consensus       243 -l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~  319 (768)
T 3rgz_A          243 -ISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL  319 (768)
T ss_dssp             -TTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred             -HhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence             457888999999988877544333  78889999999999888888887776689999999999988888888999999


Q ss_pred             ccEEEccccccccccCc-cccCCCcccEEecCCCcCCCcchhhhcCcc-cccEEEccccccccccchhhcC--CCCccEE
Q 046000          234 LTFLHLSKNNFSGELST-LFTGCVSLWFLDRSHNNFHDQIFPKYMNLT-RLWFLYLDNNKFSGKIEDGLLK--SNQLKEL  309 (470)
Q Consensus       234 L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~--~~~L~~L  309 (470)
                      |+.|++++|.+.+..+. .+..+++|++|++++|.+....+..+..++ +|+.+++++|.+.+..+..+..  +++|++|
T Consensus       320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L  399 (768)
T 3rgz_A          320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL  399 (768)
T ss_dssp             CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred             ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence            99999999988755554 488899999999999988766777777776 8999999999988776666665  7889999


Q ss_pred             ECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcc
Q 046000          310 DMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDL  388 (470)
Q Consensus       310 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l  388 (470)
                      ++++|.+.+.+|..+..+.. ++.|++++|.+.+..|..+..+++|+.|++++|.+....+..+ .+++|++|++++|++
T Consensus       400 ~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l  478 (768)
T 3rgz_A          400 YLQNNGFTGKIPPTLSNCSE-LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL  478 (768)
T ss_dssp             ECCSSEEEEECCGGGGGCTT-CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ECCCCccccccCHHHhcCCC-CCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc
Confidence            99999999889998888877 9999999999998999999999999999999999986555444 789999999999999


Q ss_pred             cccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccCCCc
Q 046000          389 SGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCF  468 (470)
Q Consensus       389 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~  468 (470)
                      .+..|..+..+++|+.|++++|++.+.+|..++.+++|++|++++|++.+.+|..+..+++|+.|++++|++++.+|.++
T Consensus       479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~  558 (768)
T 3rgz_A          479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM  558 (768)
T ss_dssp             CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred             cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence            98999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             c
Q 046000          469 T  469 (470)
Q Consensus       469 ~  469 (470)
                      .
T Consensus       559 ~  559 (768)
T 3rgz_A          559 F  559 (768)
T ss_dssp             G
T ss_pred             h
Confidence            4

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=7.9e-50  Score=398.65  Aligned_cols=451  Identities=21%  Similarity=0.179  Sum_probs=280.3

Q ss_pred             cccccccCCCcCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhc
Q 046000            3 FLGAGLHKLKNLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVN   77 (470)
Q Consensus         3 ~l~~~l~~~~~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~   77 (470)
                      .+|..+.+  ++++||+++|.+.+..+     +++|++|++++|.+.+..|.+|+++++|++|++++|.+.+..|.++..
T Consensus        26 ~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  103 (606)
T 3t6q_A           26 EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG  103 (606)
T ss_dssp             SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred             cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc
Confidence            45554443  78899999998876543     788889999999888888888899999999999999888777888888


Q ss_pred             CcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhc
Q 046000           78 LASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQN  157 (470)
Q Consensus        78 l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~  157 (470)
                      +++|++|++++|.+.+. +...+..+++|++|++++|.+.....      +.+..+++|++|++++|.+. .++...+..
T Consensus       104 l~~L~~L~L~~n~i~~l-~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~  175 (606)
T 3t6q_A          104 PKALKHLFFIQTGISSI-DFIPLHNQKTLESLYLGSNHISSIKL------PKGFPTEKLKVLDFQNNAIH-YLSKEDMSS  175 (606)
T ss_dssp             CTTCCEEECTTSCCSCG-GGSCCTTCTTCCEEECCSSCCCCCCC------CTTCCCTTCCEEECCSSCCC-EECHHHHHT
T ss_pred             cccccEeeccccCcccC-CcchhccCCcccEEECCCCcccccCc------ccccCCcccCEEEcccCccc-ccChhhhhh
Confidence            99999999999988743 33567888889999998887663221      22333677888888888887 555555667


Q ss_pred             CCCCc--EEEccccccCCccCCCCCCC---------------------------------------------------Cc
Q 046000          158 NTKLE--VLCLTNNSFTGNLQLPHSKH---------------------------------------------------DF  184 (470)
Q Consensus       158 ~~~L~--~L~l~~~~i~~~~~~~~~~~---------------------------------------------------~~  184 (470)
                      +++++  .+++++|.+....+..+...                                                   .+
T Consensus       176 l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~  255 (606)
T 3t6q_A          176 LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS  255 (606)
T ss_dssp             TTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSE
T ss_pred             hcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCc
Confidence            77777  77777777664433322210                                                   04


Q ss_pred             ccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecC
Q 046000          185 LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRS  264 (470)
Q Consensus       185 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  264 (470)
                      ++.+++++|.+. .++...+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+....+..+..+++|++|+++
T Consensus       256 L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  333 (606)
T 3t6q_A          256 VESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK  333 (606)
T ss_dssp             EEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred             eeEEEeecCccC-ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence            555555555555 344444444666666666666665 455556666666666666666665555555666666666666


Q ss_pred             CCcCCCcc-hhhhcCcccccEEEcccccccccc--chhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcc
Q 046000          265 HNNFHDQI-FPKYMNLTRLWFLYLDNNKFSGKI--EDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFL  341 (470)
Q Consensus       265 ~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~  341 (470)
                      +|.+.... ...+..+++|+.+++++|.+.+..  +..+..+++|++|++++|.+.+..+..+..+.. ++.|++++|.+
T Consensus       334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l  412 (606)
T 3t6q_A          334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ-LELLDLAFTRL  412 (606)
T ss_dssp             SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT-CSEEECTTCCE
T ss_pred             CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc-CCeEECCCCcC
Confidence            66554322 223555666666666666555433  344555566666666666555444444444443 56666666655


Q ss_pred             cCCCch-hhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCccccc---CccchhcCCCccEEEcCCccceeec
Q 046000          342 KGNIPM-QLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGT---IPNALFRSSKLMTLDLRDNGFSGII  416 (470)
Q Consensus       342 ~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~---~~~~l~~~~~L~~L~l~~n~l~~~~  416 (470)
                      .+..+. .+..+++|+.|++++|.+...++..+ .+++|++|++++|++.+.   .+..+..+++|+.|++++|++.+..
T Consensus       413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  492 (606)
T 3t6q_A          413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID  492 (606)
T ss_dssp             ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred             CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence            543332 24555566666666665555444333 455566666666655431   1234555556666666666655555


Q ss_pred             chhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccCCC
Q 046000          417 SDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSC  467 (470)
Q Consensus       417 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~  467 (470)
                      +..+..+++|++|++++|++++..|..+..++.| .|++++|++++..|..
T Consensus       493 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~  542 (606)
T 3t6q_A          493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL  542 (606)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGG
T ss_pred             hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhh
Confidence            5555555666666666666555555555555555 5555666555544443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.3e-49  Score=397.10  Aligned_cols=450  Identities=21%  Similarity=0.158  Sum_probs=382.5

Q ss_pred             cccccCCCcCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCc
Q 046000            5 GAGLHKLKNLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLA   79 (470)
Q Consensus         5 ~~~l~~~~~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~   79 (470)
                      |++++++++|++|++++|++.+..+     +++|++|++++|.+++..|.+|+++++|++|++++|.+.+..+..+..++
T Consensus        50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~  129 (606)
T 3t6q_A           50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK  129 (606)
T ss_dssp             TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred             hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCC
Confidence            6789999999999999999876543     88999999999999988899999999999999999999977788899999


Q ss_pred             CCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCccc--EEEccCccccCccchHhhh-
Q 046000           80 SVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLK--YLDLSHNNLAGDFPAWILQ-  156 (470)
Q Consensus        80 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~--~L~l~~~~i~~~~~~~~~~-  156 (470)
                      +|++|++++|.+.+... ..+..+++|++|++++|.+.....      ..+..+++|+  ++++++|.+.+..+. .+. 
T Consensus       130 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~l~L~l~~n~l~~~~~~-~~~~  201 (606)
T 3t6q_A          130 TLESLYLGSNHISSIKL-PKGFPTEKLKVLDFQNNAIHYLSK------EDMSSLQQATNLSLNLNGNDIAGIEPG-AFDS  201 (606)
T ss_dssp             TCCEEECCSSCCCCCCC-CTTCCCTTCCEEECCSSCCCEECH------HHHHTTTTCCSEEEECTTCCCCEECTT-TTTT
T ss_pred             cccEEECCCCcccccCc-ccccCCcccCEEEcccCcccccCh------hhhhhhcccceeEEecCCCccCccChh-Hhhh
Confidence            99999999999985322 244459999999999987763321      2345556677  777888776632222 221 


Q ss_pred             ------------------------------------------------cC--CCCcEEEccccccCCccCCCCCCCCccc
Q 046000          157 ------------------------------------------------NN--TKLEVLCLTNNSFTGNLQLPHSKHDFLH  186 (470)
Q Consensus       157 ------------------------------------------------~~--~~L~~L~l~~~~i~~~~~~~~~~~~~L~  186 (470)
                                                                      .+  .+++.+++++|.+.+.....+..+++|+
T Consensus       202 ~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  281 (606)
T 3t6q_A          202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQ  281 (606)
T ss_dssp             CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCS
T ss_pred             ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCC
Confidence                                                            11  1678888899988887777899999999


Q ss_pred             EEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccc-cCccccCCCcccEEecCC
Q 046000          187 HLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGE-LSTLFTGCVSLWFLDRSH  265 (470)
Q Consensus       187 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~  265 (470)
                      +|++++|.+. .+|..+. .+++|++|++++|.+.+..+..+..+++|+.|++++|.+... ....+..+++|++|++++
T Consensus       282 ~L~l~~n~l~-~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  359 (606)
T 3t6q_A          282 ELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH  359 (606)
T ss_dssp             EEECTTSCCS-CCCSSCC-SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCS
T ss_pred             EEeccCCccC-CCChhhc-ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCC
Confidence            9999999998 7887654 489999999999999977788899999999999999988744 445688999999999999


Q ss_pred             CcCCCcc--hhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchh-HHhhhccccEEEcCCCccc
Q 046000          266 NNFHDQI--FPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHW-IANFSSYLEVLLMSKNFLK  342 (470)
Q Consensus       266 ~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~~~~~  342 (470)
                      |.+....  ...+..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+.+..+.. +..+.. ++.|++++|.+.
T Consensus       360 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~l~  438 (606)
T 3t6q_A          360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL-LKVLNLSHSLLD  438 (606)
T ss_dssp             SCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT-CCEEECTTCCCB
T ss_pred             CccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc-CCEEECCCCccC
Confidence            9998765  567889999999999999998787888999999999999999998666554 455554 999999999999


Q ss_pred             CCCchhhhccCCCeEEEccCccccCccc---c-ccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecch
Q 046000          343 GNIPMQLLNHGSLQLLSVSENCLSGFMT---S-SFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISD  418 (470)
Q Consensus       343 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~-~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~  418 (470)
                      +..+..+..+++|++|++++|.+.+...   . ...+++|++|++++|++.+..+..+..+++|+.|++++|++.+..++
T Consensus       439 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  518 (606)
T 3t6q_A          439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE  518 (606)
T ss_dssp             TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGG
T ss_pred             CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChh
Confidence            8888889999999999999999876321   2 23789999999999999988889999999999999999999999999


Q ss_pred             hhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccCC
Q 046000          419 QINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPS  466 (470)
Q Consensus       419 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~  466 (470)
                      .+..+++| +|++++|++++..|..+..+++|+.+++++|++++..+.
T Consensus       519 ~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          519 ALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             GGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             HhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            99999999 999999999998999999999999999999999976653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.2e-48  Score=387.01  Aligned_cols=437  Identities=18%  Similarity=0.111  Sum_probs=274.2

Q ss_pred             CcCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEec
Q 046000           12 KNLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDL   86 (470)
Q Consensus        12 ~~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l   86 (470)
                      +++++|++++|.+.+...     +++|++|++++|.+++..|.+|+++++|++|++++|.+.+..|++|+++++|++|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            567777777776654433     667777777777777666666777777777777777776666677777777777777


Q ss_pred             cCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCC----c
Q 046000           87 SNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKL----E  162 (470)
Q Consensus        87 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L----~  162 (470)
                      ++|.+.+.. ...+.++++|++|++++|.+...     .++..+..+++|++|++++|.+.+ ++...+..++++    .
T Consensus       112 ~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~-----~lp~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~~l~  184 (606)
T 3vq2_A          112 VETKLASLE-SFPIGQLITLKKLNVAHNFIHSC-----KLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNL  184 (606)
T ss_dssp             TTSCCCCSS-SSCCTTCTTCCEEECCSSCCCCC-----CCCGGGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHCTTCCC
T ss_pred             cCCcccccc-ccccCCCCCCCEEeCCCCcccce-----echHhHhhcCCCCEEEccCCccee-cChhhhhhhhccccccc
Confidence            777766333 24466677777777776654421     123445666667777777776653 222222222222    2


Q ss_pred             EEEccccccCCccCCCC---------------------------------------------------------------
Q 046000          163 VLCLTNNSFTGNLQLPH---------------------------------------------------------------  179 (470)
Q Consensus       163 ~L~l~~~~i~~~~~~~~---------------------------------------------------------------  179 (470)
                      ++++++|.+.......+                                                               
T Consensus       185 ~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~  264 (606)
T 3vq2_A          185 SLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID  264 (606)
T ss_dssp             EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEE
T ss_pred             eeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHh
Confidence            45555555443322222                                                               


Q ss_pred             -----------------CCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEcccc
Q 046000          180 -----------------SKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKN  242 (470)
Q Consensus       180 -----------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  242 (470)
                                       ..+++|+.++++++.+. .+|  .+..+++|++|++++|.+. .+| .+ .+++|+.|++++|
T Consensus       265 ~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n  338 (606)
T 3vq2_A          265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE--DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMN  338 (606)
T ss_dssp             EEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC--CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESC
T ss_pred             heeccccccccccccccccCCCCCEEEecCccch-hhh--hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCC
Confidence                             22334444444444443 333  1222445555555555552 344 23 5556666666655


Q ss_pred             ccccccCccccCCCcccEEecCCCcCCCcc--hhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCc
Q 046000          243 NFSGELSTLFTGCVSLWFLDRSHNNFHDQI--FPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHI  320 (470)
Q Consensus       243 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  320 (470)
                      ......  .+..+++|++|++++|.+....  ...+..+++|+.+++++|.+.+ .+..+..+++|+.|++++|.+.+..
T Consensus       339 ~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~  415 (606)
T 3vq2_A          339 KGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVT  415 (606)
T ss_dssp             SSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTT
T ss_pred             cCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCcc
Confidence            333222  3456677777777777665432  4556677777777777777663 3356667777777777777776555


Q ss_pred             c-hhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccC-ccccc-cccCcccEEEccCCcccccCccchh
Q 046000          321 P-HWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSG-FMTSS-FSLSSLVHLYVQRNDLSGTIPNALF  397 (470)
Q Consensus       321 ~-~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~-~~~~~L~~L~l~~~~l~~~~~~~l~  397 (470)
                      + ..+..+.. ++.|++++|.+.+..|..+..+++|++|++++|.+.+ ..+.. ..+++|++|++++|++++..+..+.
T Consensus       416 ~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  494 (606)
T 3vq2_A          416 EFSAFLSLEK-LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD  494 (606)
T ss_dssp             TTTTTTTCTT-CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             Chhhhhcccc-CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc
Confidence            5 34444444 7788888877776677777777788888888887765 22333 3677888888888887777777777


Q ss_pred             cCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCC-CCCeEEccCcccccccCC
Q 046000          398 RSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLR-RLGVMDLSHNRINGSIPS  466 (470)
Q Consensus       398 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~l~l~~n~~~~~~p~  466 (470)
                      .+++|+.|++++|++.+..|..+..+++|++|++++|+++ .+|..+..++ +|+.|++++|+++...|.
T Consensus       495 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            7788888888888877777777777888888888888877 4666677776 588888888887765553

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.4e-47  Score=384.56  Aligned_cols=112  Identities=22%  Similarity=0.188  Sum_probs=80.2

Q ss_pred             cccccCCCcCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCc
Q 046000            5 GAGLHKLKNLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLA   79 (470)
Q Consensus         5 ~~~l~~~~~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~   79 (470)
                      +.+++++++|++|++++|.+.+..+     +++|++|++++|.+++..+.+|+++++|++|++++|.+.+..+..|.+++
T Consensus        42 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  121 (680)
T 1ziw_A           42 AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK  121 (680)
T ss_dssp             GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCT
T ss_pred             HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccC
Confidence            3467788888888888887776644     67778888888877765555677788888888888877766667777777


Q ss_pred             CCcEEeccCccCcCccChhhhccccccceecccCCCCc
Q 046000           80 SVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNN  117 (470)
Q Consensus        80 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  117 (470)
                      +|++|++++|.+.+..+ ..+.++++|++|++++|.+.
T Consensus       122 ~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~  158 (680)
T 1ziw_A          122 NLITLDLSHNGLSSTKL-GTQVQLENLQELLLSNNKIQ  158 (680)
T ss_dssp             TCCEEECCSSCCSCCCC-CSSSCCTTCCEEECCSSCCC
T ss_pred             CCCEEECCCCcccccCc-hhhcccccCCEEEccCCccc
Confidence            78888887777764433 45566666777766666543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=8.8e-47  Score=381.58  Aligned_cols=451  Identities=21%  Similarity=0.200  Sum_probs=261.8

Q ss_pred             cccccccCCCcCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhc
Q 046000            3 FLGAGLHKLKNLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVN   77 (470)
Q Consensus         3 ~l~~~l~~~~~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~   77 (470)
                      .+|..+.  +++++|++++|.+.+.+.     +++|++|++++|.+++..|.+|+++++|++|++++|.+....+.+|..
T Consensus        18 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~   95 (680)
T 1ziw_A           18 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF   95 (680)
T ss_dssp             SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence            4555443  689999999998876654     789999999999999888999999999999999999998666667999


Q ss_pred             CcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhh-
Q 046000           78 LASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQ-  156 (470)
Q Consensus        78 l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~-  156 (470)
                      +++|++|++++|.+. ..+...+.++++|++|++++|.+....      ...+..+++|++|++++|.+.+ ++...+. 
T Consensus        96 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~  167 (680)
T 1ziw_A           96 CTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTK------LGTQVQLENLQELLLSNNKIQA-LKSEELDI  167 (680)
T ss_dssp             CTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCC------CCSSSCCTTCCEEECCSSCCCC-BCHHHHGG
T ss_pred             CCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccC------chhhcccccCCEEEccCCcccc-cCHHHhhc
Confidence            999999999999987 444467889999999999998765322      2335566778888888887763 3333222 


Q ss_pred             -cCCCCcEEEccccccCCccCCCCCCC---------------------------CcccEEeccCCcccCCCCcchhhhhc
Q 046000          157 -NNTKLEVLCLTNNSFTGNLQLPHSKH---------------------------DFLHHLDVSSNNFTGKLPQDKGIILQ  208 (470)
Q Consensus       157 -~~~~L~~L~l~~~~i~~~~~~~~~~~---------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~  208 (470)
                       .+++|+.|++++|.+.+..+..+..+                           ++|+.|++++|.+.+..+..+. .++
T Consensus       168 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~  246 (680)
T 1ziw_A          168 FANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLK  246 (680)
T ss_dssp             GTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGG
T ss_pred             cccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccC
Confidence             34667777777776654443322221                           2334444444444322222211 122


Q ss_pred             --cCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCc---------------------------------ccc
Q 046000          209 --KLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELST---------------------------------LFT  253 (470)
Q Consensus       209 --~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---------------------------------~~~  253 (470)
                        +|++|++++|.+.+..+..|..+++|+.|++++|.+....+.                                 .+.
T Consensus       247 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~  326 (680)
T 1ziw_A          247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ  326 (680)
T ss_dssp             GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTT
T ss_pred             cCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcc
Confidence              244444444444433334444444444444444443332222                                 233


Q ss_pred             CCCcccEEecCCCcCCCcchhhhcCcccccEEEcc----------------------------ccccccccchhhcCCCC
Q 046000          254 GCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLD----------------------------NNKFSGKIEDGLLKSNQ  305 (470)
Q Consensus       254 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~----------------------------~~~~~~~~~~~~~~~~~  305 (470)
                      .+++|++|++++|.+.......+..+++|++++++                            +|++.+..+..+..+++
T Consensus       327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  406 (680)
T 1ziw_A          327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH  406 (680)
T ss_dssp             TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence            34444444444444444333334444444444433                            33333333444555556


Q ss_pred             ccEEECCCCcccCCcc-hhHHhhhccccEEEcCCCcccC--------------------------CCchhhhccCCCeEE
Q 046000          306 LKELDMSNNMLSGHIP-HWIANFSSYLEVLLMSKNFLKG--------------------------NIPMQLLNHGSLQLL  358 (470)
Q Consensus       306 L~~L~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~~~~--------------------------~~~~~~~~~~~L~~L  358 (470)
                      |+.|++++|.+.+.++ ..+..+.. ++++++++|.+.+                          ..|..+..+++|+.|
T Consensus       407 L~~L~L~~N~l~~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L  485 (680)
T 1ziw_A          407 LEVLDLGLNEIGQELTGQEWRGLEN-IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL  485 (680)
T ss_dssp             CCEEECCSSCCEEECCSGGGTTCTT-CCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred             CCEEeCCCCcCccccCcccccCccc-ccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence            6666666665544343 22222222 5555555554432                          234445555555666


Q ss_pred             EccCccccCcccccc-ccCcccEEEccCCcccccCc--------cchhcCCCccEEEcCCccceeecchhhhcCCCCcEE
Q 046000          359 SVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIP--------NALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVL  429 (470)
Q Consensus       359 ~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~--------~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  429 (470)
                      ++++|.+..+++..+ .+++|++|++++|.+.+...        ..+..+++|+.|++++|++....++.|.++++|++|
T Consensus       486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L  565 (680)
T 1ziw_A          486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII  565 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCccee
Confidence            666665555554443 45566666666665553321        124555666666666666664433456666666666


Q ss_pred             EccCcccCcccchhhccCCCCCeEEccCcccccccC
Q 046000          430 LLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIP  465 (470)
Q Consensus       430 ~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p  465 (470)
                      ++++|+++...+..+..+++|+.|++++|++++..|
T Consensus       566 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~  601 (680)
T 1ziw_A          566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK  601 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH
T ss_pred             ECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh
Confidence            666666665555555666666666666666665444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.1e-47  Score=378.34  Aligned_cols=420  Identities=20%  Similarity=0.171  Sum_probs=347.5

Q ss_pred             cccccCCCcCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCc
Q 046000            5 GAGLHKLKNLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLA   79 (470)
Q Consensus         5 ~~~l~~~~~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~   79 (470)
                      +.+++++++|++|++++|.+.+..+     +++|++|++++|.+++..|.+|+++++|++|++++|.+.+..+..+++++
T Consensus        49 ~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  128 (606)
T 3vq2_A           49 SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI  128 (606)
T ss_dssp             TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred             hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCC
Confidence            4578999999999999999876543     78999999999999988899999999999999999999877778899999


Q ss_pred             CCcEEeccCccCcC-ccChhhhccccccceecccCCCCccccccccC---------------------CCCcccccCccc
Q 046000           80 SVEYLDLSNSYFEG-TFPISSLANHSKLKVLRLSSRNNNMLQLKTEN---------------------FLPTFQLKHDLK  137 (470)
Q Consensus        80 ~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---------------------~~~~~~~~~~L~  137 (470)
                      +|++|++++|.+.+ ..| ..+.++++|++|++++|.+.........                     ..+......+|+
T Consensus       129 ~L~~L~L~~n~l~~~~lp-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~  207 (606)
T 3vq2_A          129 TLKKLNVAHNFIHSCKLP-AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH  207 (606)
T ss_dssp             TCCEEECCSSCCCCCCCC-GGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred             CCCEEeCCCCcccceech-HhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceee
Confidence            99999999999875 334 6788999999999999877644322110                     011111223677


Q ss_pred             EEEccCccccC----------------------------------------------------------ccchHhhhcCC
Q 046000          138 YLDLSHNNLAG----------------------------------------------------------DFPAWILQNNT  159 (470)
Q Consensus       138 ~L~l~~~~i~~----------------------------------------------------------~~~~~~~~~~~  159 (470)
                      +|++++|.+.+                                                          .++.  +..++
T Consensus       208 ~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~  285 (606)
T 3vq2_A          208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLA  285 (606)
T ss_dssp             EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGT
T ss_pred             eeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCC
Confidence            77777765431                                                          1111  34567


Q ss_pred             CCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEc
Q 046000          160 KLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHL  239 (470)
Q Consensus       160 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  239 (470)
                      +|+.++++++.+....  .+..+++|++|++++|.+ +.+|..   .+++|++|++++|......  .+..+++|+.|++
T Consensus       286 ~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l-~~lp~~---~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l  357 (606)
T 3vq2_A          286 NVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQL-KQFPTL---DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDL  357 (606)
T ss_dssp             TCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCC-SSCCCC---CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEEC
T ss_pred             CCCEEEecCccchhhh--hccccccCCEEEcccccC-cccccC---CCCccceeeccCCcCccch--hhccCCCCCEEEC
Confidence            7888888888876533  778889999999999999 488843   5899999999999654333  5779999999999


Q ss_pred             ccccccccc--CccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccc-hhhcCCCCccEEECCCCcc
Q 046000          240 SKNNFSGEL--STLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIE-DGLLKSNQLKELDMSNNML  316 (470)
Q Consensus       240 ~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~  316 (470)
                      ++|.+....  +..+..+++|++|++++|.+.... ..+..+++|+.+++++|.+.+..+ ..+..+++|+.|++++|.+
T Consensus       358 s~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  436 (606)
T 3vq2_A          358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT  436 (606)
T ss_dssp             CSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred             cCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence            999987653  677889999999999999886643 678889999999999999987666 6788999999999999999


Q ss_pred             cCCcchhHHhhhccccEEEcCCCcccC-CCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCcc
Q 046000          317 SGHIPHWIANFSSYLEVLLMSKNFLKG-NIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPN  394 (470)
Q Consensus       317 ~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~  394 (470)
                      .+..+..+..+.. ++.|++++|.+.+ ..|..+..+++|+.|++++|.+++.++..+ .+++|++|++++|++.+..|.
T Consensus       437 ~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  515 (606)
T 3vq2_A          437 KIDFDGIFLGLTS-LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS  515 (606)
T ss_dssp             EECCTTTTTTCTT-CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG
T ss_pred             CccchhhhcCCCC-CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH
Confidence            9778888877776 9999999999986 378889999999999999999998877665 789999999999999988899


Q ss_pred             chhcCCCccEEEcCCccceeecchhhhcCC-CCcEEEccCcccCc
Q 046000          395 ALFRSSKLMTLDLRDNGFSGIISDQINESS-NLRVLLLRGNYLEG  438 (470)
Q Consensus       395 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~i~~  438 (470)
                      .+..+++|+.|++++|+++ .+|..+..++ +|++|++++|++.+
T Consensus       516 ~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          516 HYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             GTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred             HccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCccc
Confidence            9999999999999999999 4666688887 69999999999985

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-46  Score=373.01  Aligned_cols=445  Identities=21%  Similarity=0.164  Sum_probs=357.2

Q ss_pred             cccccccCCCcCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhc
Q 046000            3 FLGAGLHKLKNLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVN   77 (470)
Q Consensus         3 ~l~~~l~~~~~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~   77 (470)
                      .+|..+  .+++++||+++|++++...     +++|++|++++|.+++..+.+|+++++|++|++++|.+.+..|++|..
T Consensus        21 ~ip~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   98 (570)
T 2z63_A           21 KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG   98 (570)
T ss_dssp             SCCSSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred             ccCCCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcC
Confidence            345433  3579999999998875543     889999999999999877888999999999999999998777889999


Q ss_pred             CcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhc
Q 046000           78 LASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQN  157 (470)
Q Consensus        78 l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~  157 (470)
                      +++|++|++++|.+.+ .+...+.++++|++|++++|.+...     .++..+..+++|++|++++|.+. .++...+..
T Consensus        99 l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~-----~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~  171 (570)
T 2z63_A           99 LSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSF-----KLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRV  171 (570)
T ss_dssp             CTTCCEEECTTSCCCC-STTCSCTTCTTCCEEECCSSCCCCC-----CCCGGGGGCTTCCEEECTTSCCC-EECGGGGHH
T ss_pred             cccccccccccccccc-CCCccccccccccEEecCCCcccee-----cChhhhcccCCCCEEeCcCCccc-eecHHHccc
Confidence            9999999999999874 4434588999999999999876522     23456778899999999999988 454444556


Q ss_pred             CCCC----cEEEccccccCCccCCCCCCCCcccEEeccCCc---------------------------------------
Q 046000          158 NTKL----EVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNN---------------------------------------  194 (470)
Q Consensus       158 ~~~L----~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~---------------------------------------  194 (470)
                      +++|    ..+++++|.+....+..+... +|++++++++.                                       
T Consensus       172 l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~  250 (570)
T 2z63_A          172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA  250 (570)
T ss_dssp             HHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTT
T ss_pred             hhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhh
Confidence            6667    789999998886665555544 67888777652                                       


Q ss_pred             -------------------ccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCC
Q 046000          195 -------------------FTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGC  255 (470)
Q Consensus       195 -------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l  255 (470)
                                         +.+..+. .+..+++|+.|++++|.+. .+|..+..+ +|+.|++++|.+.....   ..+
T Consensus       251 ~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~---~~l  324 (570)
T 2z63_A          251 LEGLCNLTIEEFRLAYLDYYLDDIID-LFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT---LKL  324 (570)
T ss_dssp             TGGGGGSEEEEEEEEETTEEESCSTT-TTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB---CBC
T ss_pred             hccccccchhhhhhhcchhhhhhchh-hhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc---ccc
Confidence                               2222222 2334678888888888877 466667777 88888888888773332   367


Q ss_pred             CcccEEecCCCcCCCcchhhhcCcccccEEEcccccccccc--chhhcCCCCccEEECCCCcccCCcchhHHhhhccccE
Q 046000          256 VSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKI--EDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEV  333 (470)
Q Consensus       256 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  333 (470)
                      ++|+.|++++|.+......  ..+++|+.+++++|.+.+..  +..+..+++|+.|++++|.+.+ .+..+..+.. ++.
T Consensus       325 ~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~-L~~  400 (570)
T 2z63_A          325 KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQ-LEH  400 (570)
T ss_dssp             SSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTT-CCE
T ss_pred             cccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccccccCC-CCE
Confidence            8888899988877654333  67899999999999887543  5678889999999999999874 4444555555 999


Q ss_pred             EEcCCCcccCCCc-hhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCccc-ccCccchhcCCCccEEEcCCc
Q 046000          334 LLMSKNFLKGNIP-MQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLS-GTIPNALFRSSKLMTLDLRDN  410 (470)
Q Consensus       334 L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~-~~~~~~l~~~~~L~~L~l~~n  410 (470)
                      |++++|.+.+..+ ..+..+++|+.|++++|.+....+..+ .+++|++|++++|.+. +..|..+..+++|+.|++++|
T Consensus       401 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n  480 (570)
T 2z63_A          401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC  480 (570)
T ss_dssp             EECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             EEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence            9999999886655 467889999999999999887766655 7899999999999997 467888999999999999999


Q ss_pred             cceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccCCC
Q 046000          411 GFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSC  467 (470)
Q Consensus       411 ~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~  467 (470)
                      ++.+..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++.+|..
T Consensus       481 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence            999888999999999999999999999888888999999999999999999998864

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-46  Score=386.55  Aligned_cols=451  Identities=22%  Similarity=0.219  Sum_probs=342.7

Q ss_pred             CCCcCceeeccCCCCCCccc-----cccccccccccccCCCCc-hHhhhcCCCCcEEEccCCccccccchhhhcCcCCcE
Q 046000           10 KLKNLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHL-LDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEY   83 (470)
Q Consensus        10 ~~~~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~   83 (470)
                      -.+++++|||++|.+++..+     +++|++|++++|...+.+ |.+|+++++|++|+|++|.+.+..|++|.++++|++
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  101 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE  101 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence            45789999999999876543     889999999999655454 788999999999999999999888999999999999


Q ss_pred             EeccCccCcCccCh-hhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcC--CC
Q 046000           84 LDLSNSYFEGTFPI-SSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNN--TK  160 (470)
Q Consensus        84 L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~--~~  160 (470)
                      |++++|.+.+..+. ..+..+++|++|++++|.+....     ....+..+++|++|++++|.+.+..+..+ ..+  ++
T Consensus       102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-----~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l-~~l~~~~  175 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-----LHPSFGKLNSLKSIDFSSNQIFLVCEHEL-EPLQGKT  175 (844)
T ss_dssp             EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC-----CCGGGGTCSSCCEEEEESSCCCCCCSGGG-HHHHHCS
T ss_pred             eeCcCCCCCcccccCccccccCCCCEEECCCCcccccc-----cchhHhhCCCCCEEECCCCcCCeeCHHHc-ccccCCc
Confidence            99999999865552 34888999999999998775321     22457888999999999999885555433 344  78


Q ss_pred             CcEEEccccccCCccCCCCCCCCc------ccEEeccCCcccCCCCcchhhh----------------------------
Q 046000          161 LEVLCLTNNSFTGNLQLPHSKHDF------LHHLDVSSNNFTGKLPQDKGII----------------------------  206 (470)
Q Consensus       161 L~~L~l~~~~i~~~~~~~~~~~~~------L~~L~l~~~~~~~~~~~~~~~~----------------------------  206 (470)
                      |+.|++++|.+....+..+..+.+      |+.|++++|.+.+..+..+...                            
T Consensus       176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~  255 (844)
T 3j0a_A          176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP  255 (844)
T ss_dssp             SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred             cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence            889999888887666655555444      8888888886654444332211                            


Q ss_pred             ---------hccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhc
Q 046000          207 ---------LQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYM  277 (470)
Q Consensus       207 ---------~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  277 (470)
                               .++|+.|++++|.+.+..+..|..+++|+.|++++|.+....+..+.++++|++|++++|.+....+..+.
T Consensus       256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  335 (844)
T 3j0a_A          256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY  335 (844)
T ss_dssp             GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred             ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhc
Confidence                     25688888888888777777788888888888888888877777888888888888888888777677788


Q ss_pred             CcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcch---------------hHHhhhccccEEEcCCCccc
Q 046000          278 NLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPH---------------WIANFSSYLEVLLMSKNFLK  342 (470)
Q Consensus       278 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---------------~~~~~~~~l~~L~l~~~~~~  342 (470)
                      .+++|+.|++++|.+....+..+..+++|+.|++++|.+.+ ++.               .+......++.+++++|.+.
T Consensus       336 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~  414 (844)
T 3j0a_A          336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLE  414 (844)
T ss_dssp             SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCC
T ss_pred             CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-ccCCCCcchhccCCCCcccccccccccceeecccCccc
Confidence            88888888888888876666677778888888888887762 221               00000112444455555544


Q ss_pred             CC-CchhhhccCCCeEEEccCccccCcccccc--ccCcccEEEccCCcccc-----cCccchhcCCCccEEEcCCcccee
Q 046000          343 GN-IPMQLLNHGSLQLLSVSENCLSGFMTSSF--SLSSLVHLYVQRNDLSG-----TIPNALFRSSKLMTLDLRDNGFSG  414 (470)
Q Consensus       343 ~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~--~~~~L~~L~l~~~~l~~-----~~~~~l~~~~~L~~L~l~~n~l~~  414 (470)
                      +. .+..+..+++|+.|++++|.+...+....  .+++|++|++++|.+..     ..+..+..+++|+.|++++|++++
T Consensus       415 ~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  494 (844)
T 3j0a_A          415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS  494 (844)
T ss_dssp             SSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTT
T ss_pred             cCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccc
Confidence            22 12234578889999999998886654422  57889999999998863     334567788999999999999998


Q ss_pred             ecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccCCCcc
Q 046000          415 IISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFT  469 (470)
Q Consensus       415 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~  469 (470)
                      ..+..+..+++|++|+|++|++++..+..+.  ++|+.|++++|++++..|..|.
T Consensus       495 ~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~  547 (844)
T 3j0a_A          495 LPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV  547 (844)
T ss_dssp             CCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS
T ss_pred             cChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC
Confidence            8888889999999999999999876666665  8899999999999988887764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.5e-44  Score=356.46  Aligned_cols=437  Identities=19%  Similarity=0.149  Sum_probs=294.2

Q ss_pred             CcCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEec
Q 046000           12 KNLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDL   86 (470)
Q Consensus        12 ~~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l   86 (470)
                      ++|++|++++|.+.+..+     +++|++|++++|.+++..|.+|+++++|++|++++|.+.+..+..++.+++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            567777777776654432     666777777777777666666777777777777777776666666777777777777


Q ss_pred             cCccCcCccChhhhccccccceecccCCCC-ccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEE
Q 046000           87 SNSYFEGTFPISSLANHSKLKVLRLSSRNN-NMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLC  165 (470)
Q Consensus        87 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~  165 (470)
                      ++|.+.+......+.++++|++|++++|.. ....      ...+..+++|++|++++|.+.+..+.. +..+++|+.|+
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~  178 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR------RIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLT  178 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC------TTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEE
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccC------HhhhhcccccCeeeccCCcccccChhh-hhccccCceEe
Confidence            777665322223566677777777766642 1111      123455566777777777766444433 34566677777


Q ss_pred             ccccccCCccCCCCCCCCcccEEeccCCcccCCC--CcchhhhhccCceeeccCCccCCCCc----hhhcCCCCccEEEc
Q 046000          166 LTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKL--PQDKGIILQKLLYIDMANNRFEGNLP----SSIGDMKTLTFLHL  239 (470)
Q Consensus       166 l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l  239 (470)
                      ++++.+.......+..+++|++|++++|.+.+..  +......++.|++|+++++.+.+..+    ..+..+++++.+++
T Consensus       179 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l  258 (549)
T 2z81_A          179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF  258 (549)
T ss_dssp             EECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred             cccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccc
Confidence            7666654332222334666777777777665321  22222335667777777766543222    22344566666666


Q ss_pred             cccccccccC------cc-----------------------------ccCCCcccEEecCCCcCCCcchhhhcCcccccE
Q 046000          240 SKNNFSGELS------TL-----------------------------FTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWF  284 (470)
Q Consensus       240 ~~~~~~~~~~------~~-----------------------------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  284 (470)
                      ++|.+.....      ..                             +...++|+.|++++|.+.......+..+++|+.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~  338 (549)
T 2z81_A          259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF  338 (549)
T ss_dssp             ESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCE
T ss_pred             ccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccE
Confidence            6665432110      00                             112346777777777776544444457888999


Q ss_pred             EEccccccccccc---hhhcCCCCccEEECCCCcccCCcc--hhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEE
Q 046000          285 LYLDNNKFSGKIE---DGLLKSNQLKELDMSNNMLSGHIP--HWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLS  359 (470)
Q Consensus       285 l~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~  359 (470)
                      |++++|.+.+..+   ..+..+++|+.|++++|.+.+..+  ..+..+.. ++.|++++|.++ .+|..+..+++|+.|+
T Consensus       339 L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~-L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~  416 (549)
T 2z81_A          339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN-LTSLDISRNTFH-PMPDSCQWPEKMRFLN  416 (549)
T ss_dssp             EECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT-CCEEECTTCCCC-CCCSCCCCCTTCCEEE
T ss_pred             EEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCC-CCEEECCCCCCc-cCChhhcccccccEEE
Confidence            9999988876543   336678889999999998873221  23444444 899999999887 6777788888999999


Q ss_pred             ccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcc
Q 046000          360 VSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGP  439 (470)
Q Consensus       360 l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~  439 (470)
                      +++|.+..++...  .++|++|++++|++++..    ..+++|+.|++++|+++ .+|. ...+++|++|++++|++++.
T Consensus       417 Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~  488 (549)
T 2z81_A          417 LSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSV  488 (549)
T ss_dssp             CTTSCCSCCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCC
T ss_pred             CCCCCcccccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCc
Confidence            9999988766554  368999999999988542    47799999999999998 4555 46799999999999999988


Q ss_pred             cchhhccCCCCCeEEccCcccccccC
Q 046000          440 ISNQFCQLRRLGVMDLSHNRINGSIP  465 (470)
Q Consensus       440 ~~~~~~~l~~L~~l~l~~n~~~~~~p  465 (470)
                      .+..+..+++|+.|++++|++++.+|
T Consensus       489 ~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          489 PDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CHHHHhcCcccCEEEecCCCccCCCc
Confidence            88899999999999999999998877

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3e-44  Score=356.12  Aligned_cols=438  Identities=20%  Similarity=0.172  Sum_probs=361.3

Q ss_pred             cCceeeccCCCCCCccc--cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccCcc
Q 046000           13 NLEALDLSFNNINGTVE--SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSY   90 (470)
Q Consensus        13 ~L~~L~ls~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~   90 (470)
                      ..+.++.++..+...+.  .+++++|++++|.+++..+.+|+++++|++|++++|.+.+..+++|.++++|++|++++|.
T Consensus         8 ~~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~   87 (570)
T 2z63_A            8 PNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (570)
T ss_dssp             TTTEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             CCcEEEeCCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence            34678888877776665  6689999999999998888899999999999999999998888899999999999999999


Q ss_pred             CcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccC-ccchHhhhcCCCCcEEEcccc
Q 046000           91 FEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAG-DFPAWILQNNTKLEVLCLTNN  169 (470)
Q Consensus        91 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~~~~~~~~L~~L~l~~~  169 (470)
                      +.+ .+...+..+++|++|++++|.+.....      ..+..+++|++|++++|.+.+ .+|.. +..+++|++|++++|
T Consensus        88 l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~------~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n  159 (570)
T 2z63_A           88 IQS-LALGAFSGLSSLQKLVAVETNLASLEN------FPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSN  159 (570)
T ss_dssp             CCE-ECTTTTTTCTTCCEEECTTSCCCCSTT------CSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTS
T ss_pred             CCc-cCHhhhcCccccccccccccccccCCC------ccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCC
Confidence            984 444789999999999999998764321      136788999999999999885 35654 568999999999999


Q ss_pred             ccCCccCCCCCCCCcc----cEEeccCCcccCCCCcchhhhhccCceeeccCC---------------------------
Q 046000          170 SFTGNLQLPHSKHDFL----HHLDVSSNNFTGKLPQDKGIILQKLLYIDMANN---------------------------  218 (470)
Q Consensus       170 ~i~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~---------------------------  218 (470)
                      .+....+..+..+++|    +.+++++|.+.+..+ ..+.. .+|+++++++|                           
T Consensus       160 ~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~-~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~  237 (570)
T 2z63_A          160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF  237 (570)
T ss_dssp             CCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECT-TTTTT-CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEEC
T ss_pred             ccceecHHHccchhccchhhhhcccCCCCceecCH-HHhcc-CcceeEecccccccccchhhhhcCccccceeeeccccc
Confidence            9987766777777777    899999999884433 33332 36777777665                           


Q ss_pred             -------------------------------ccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCc
Q 046000          219 -------------------------------RFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNN  267 (470)
Q Consensus       219 -------------------------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  267 (470)
                                                     .+.+..+..+..+++|+.|+++++.+. ..+..+..+ +|++|++++|.
T Consensus       238 ~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~  315 (570)
T 2z63_A          238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCK  315 (570)
T ss_dssp             CCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCB
T ss_pred             cCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCc
Confidence                                           222334566777889999999999887 455566667 99999999998


Q ss_pred             CCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCc--chhHHhhhccccEEEcCCCcccCCC
Q 046000          268 FHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHI--PHWIANFSSYLEVLLMSKNFLKGNI  345 (470)
Q Consensus       268 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~~~~~~~~  345 (470)
                      +.....   ..+++|+.+++++|.+.+..+.  ..+++|++|++++|.+.+..  +..+..+.. ++.|++++|.+.+..
T Consensus       316 ~~~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~  389 (570)
T 2z63_A          316 FGQFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS-LKYLDLSFNGVITMS  389 (570)
T ss_dssp             CSSCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSC-CCEEECCSCSEEEEE
T ss_pred             ccccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCc-cCEEECCCCcccccc
Confidence            874332   4678999999999987754443  67899999999999987443  566666666 999999999988544


Q ss_pred             chhhhccCCCeEEEccCccccCccc-ccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccce-eecchhhhc
Q 046000          346 PMQLLNHGSLQLLSVSENCLSGFMT-SSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFS-GIISDQINE  422 (470)
Q Consensus       346 ~~~~~~~~~L~~L~l~~~~l~~~~~-~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~~  422 (470)
                      + .+..+++|+.|++++|.+...++ ..+ .+++|++|++++|.+.+..+..+..+++|+.|++++|++. +.+|..+..
T Consensus       390 ~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~  468 (570)
T 2z63_A          390 S-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE  468 (570)
T ss_dssp             E-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred             c-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhc
Confidence            4 48899999999999999987765 233 7899999999999999888889999999999999999997 568888999


Q ss_pred             CCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccCCCcc
Q 046000          423 SSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFT  469 (470)
Q Consensus       423 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~  469 (470)
                      +++|++|++++|++++..|..+..+++|+.|++++|++++..|+.|.
T Consensus       469 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  515 (570)
T 2z63_A          469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD  515 (570)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhh
Confidence            99999999999999988899999999999999999999988777664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=5.6e-44  Score=367.67  Aligned_cols=442  Identities=19%  Similarity=0.163  Sum_probs=351.4

Q ss_pred             ceeeccCCCCCCccc-cccccccccccccCCCCchHhhhcCCCCcEEEccCCccc-cccchhhhcCcCCcEEeccCccCc
Q 046000           15 EALDLSFNNINGTVE-SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLS-GSLPSVIVNLASVEYLDLSNSYFE   92 (470)
Q Consensus        15 ~~L~ls~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~~~   92 (470)
                      +..|.+++.++..+. .+++++|+|++|.+++..+.+|+++++|++|++++|... .+.|.+|.++++|++|++++|.+.
T Consensus         7 ~~~dcs~~~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~   86 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY   86 (844)
T ss_dssp             EEEEESCCCSSCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred             eEEEccCCCCCCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence            577888888887776 678999999999999888999999999999999999544 344889999999999999999998


Q ss_pred             CccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccC
Q 046000           93 GTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFT  172 (470)
Q Consensus        93 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~  172 (470)
                      +..| ..+..+++|++|++++|.+......    ...+..+++|++|++++|.+.+..+...+..+++|+.|++++|.+.
T Consensus        87 ~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           87 FLHP-DAFQGLFHLFELRLYFCGLSDAVLK----DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             EECT-TSSCSCSSCCCEECTTCCCSSCCST----TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             ccCH-hHccCCcccCEeeCcCCCCCccccc----CccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence            5544 7899999999999999977621111    1236778999999999999986555556789999999999999998


Q ss_pred             CccCCCCCCC--CcccEEeccCCcccCCCCcchhhhhc------cCceeeccCCccCCCCchhhc---------------
Q 046000          173 GNLQLPHSKH--DFLHHLDVSSNNFTGKLPQDKGIILQ------KLLYIDMANNRFEGNLPSSIG---------------  229 (470)
Q Consensus       173 ~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~------~L~~L~l~~~~~~~~~~~~l~---------------  229 (470)
                      ...+..+..+  ++|+.|++++|.+.+..+..+.. ++      .|+.|++++|.+.+..+..+.               
T Consensus       162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~  240 (844)
T 3j0a_A          162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK-CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH  240 (844)
T ss_dssp             CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS-SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred             eeCHHHcccccCCccceEECCCCccccccccchhh-cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence            7777777666  78999999999988766655332 22      499999999976544333222               


Q ss_pred             ---------------------C--CCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEE
Q 046000          230 ---------------------D--MKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLY  286 (470)
Q Consensus       230 ---------------------~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~  286 (470)
                                           +  .++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|+
T Consensus       241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  320 (844)
T 3j0a_A          241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN  320 (844)
T ss_dssp             SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEE
T ss_pred             ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEE
Confidence                                 1  26789999999998888888888999999999999999887778888999999999


Q ss_pred             ccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCcccc
Q 046000          287 LDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLS  366 (470)
Q Consensus       287 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  366 (470)
                      +++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+.. ++.|++++|.+++ ++    .+++|+.|++++|.+.
T Consensus       321 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~-L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~  394 (844)
T 3j0a_A          321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK-LQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLV  394 (844)
T ss_dssp             EESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCC-CCEEEEETCCSCC-CS----SCCSCSEEEEESCCCC
T ss_pred             CCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCC-CCEEECCCCCCCc-cc----CCCCcchhccCCCCcc
Confidence            9999998777888889999999999999987555555555555 8999999988763 22    1455555555555554


Q ss_pred             Cccc--------------------ccc--ccCcccEEEccCCcccccCcc-chhcCCCccEEEcCCccce-----eecch
Q 046000          367 GFMT--------------------SSF--SLSSLVHLYVQRNDLSGTIPN-ALFRSSKLMTLDLRDNGFS-----GIISD  418 (470)
Q Consensus       367 ~~~~--------------------~~~--~~~~L~~L~l~~~~l~~~~~~-~l~~~~~L~~L~l~~n~l~-----~~~~~  418 (470)
                      .++.                    ..+  .+++|++|++++|++++..+. .+..+++|+.|++++|.+.     +..+.
T Consensus       395 ~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~  474 (844)
T 3j0a_A          395 TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD  474 (844)
T ss_dssp             CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSS
T ss_pred             cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchh
Confidence            4332                    221  578888888888888755432 3556788999999999886     33445


Q ss_pred             hhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccCCCc
Q 046000          419 QINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCF  468 (470)
Q Consensus       419 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~  468 (470)
                      .+.++++|++|+|++|++++..+..+..+++|+.|++++|++++..|..|
T Consensus       475 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~  524 (844)
T 3j0a_A          475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL  524 (844)
T ss_dssp             CSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCC
T ss_pred             hhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhh
Confidence            68889999999999999998888999999999999999999997666554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.6e-43  Score=344.99  Aligned_cols=431  Identities=22%  Similarity=0.175  Sum_probs=305.0

Q ss_pred             ceeeccCCCCCCccc--cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccCccCc
Q 046000           15 EALDLSFNNINGTVE--SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFE   92 (470)
Q Consensus        15 ~~L~ls~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~   92 (470)
                      ++||+++|.++..+.  .+++++|++++|.+++..+.+|+++++|++|++++|.+.+..|+.|..+++|++|++++|.++
T Consensus         3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~   82 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV   82 (520)
T ss_dssp             CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred             ceEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence            467777777775544  467777888888777777777777888888888888777666777777888888888888776


Q ss_pred             CccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCC--cEEEccccc
Q 046000           93 GTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKL--EVLCLTNNS  170 (470)
Q Consensus        93 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L--~~L~l~~~~  170 (470)
                       .+|..   .+++|++|++++|.+...     ..+..+..+++|++|++++|.+.+    ..+..+++|  +.|++++|.
T Consensus        83 -~lp~~---~l~~L~~L~L~~N~l~~~-----~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~  149 (520)
T 2z7x_B           83 -KISCH---PTVNLKHLDLSFNAFDAL-----PICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGE  149 (520)
T ss_dssp             -EEECC---CCCCCSEEECCSSCCSSC-----CCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECT
T ss_pred             -ecCcc---ccCCccEEeccCCccccc-----cchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeeccc
Confidence             44422   677788888877765421     123456667778888888777663    123456666  777777777


Q ss_pred             c--CCccCCCCCCCC-cccEEeccCCcccCCCCcchhhhhc------------------------------cCceeeccC
Q 046000          171 F--TGNLQLPHSKHD-FLHHLDVSSNNFTGKLPQDKGIILQ------------------------------KLLYIDMAN  217 (470)
Q Consensus       171 i--~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~------------------------------~L~~L~l~~  217 (470)
                      +  ....+..+..+. ....++++++.+.+.++...+..++                              +|+.|++++
T Consensus       150 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  229 (520)
T 2z7x_B          150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN  229 (520)
T ss_dssp             TTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEE
T ss_pred             ccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccc
Confidence            6  444444443332 1223344444444444443333344                              445555544


Q ss_pred             CccCCCCchhh---cCCCCccEEEccccccccccCccc-----cCCCcccEEecCCCcCCCcchhhhcCc---ccccEEE
Q 046000          218 NRFEGNLPSSI---GDMKTLTFLHLSKNNFSGELSTLF-----TGCVSLWFLDRSHNNFHDQIFPKYMNL---TRLWFLY  286 (470)
Q Consensus       218 ~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~l~  286 (470)
                      +.+.+.....+   ...++|+.|++++|.+.+..+..+     ..++.|+.+++++|.+ ......+..+   .+++.++
T Consensus       230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~  308 (520)
T 2z7x_B          230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFT  308 (520)
T ss_dssp             EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEE
T ss_pred             cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEE
Confidence            44332111111   013467777777777765566555     6778888888888777 3222333333   5688888


Q ss_pred             ccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccC--CCchhhhccCCCeEEEccCcc
Q 046000          287 LDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKG--NIPMQLLNHGSLQLLSVSENC  364 (470)
Q Consensus       287 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~  364 (470)
                      +++|.+....  ....+++|++|++++|.+.+..+..+..+.. ++.|++++|.+.+  .+|..+..+++|+.|++++|.
T Consensus       309 l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~  385 (520)
T 2z7x_B          309 VSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTE-LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS  385 (520)
T ss_dssp             EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSS-CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred             cCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCC-CCEEEccCCccCccccchHHHhhCCCCCEEECCCCc
Confidence            8888876332  1257899999999999999778888877776 9999999999985  456778899999999999999


Q ss_pred             ccC-cccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccch
Q 046000          365 LSG-FMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISN  442 (470)
Q Consensus       365 l~~-~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~  442 (470)
                      +.+ ++...+ .+++|++|++++|++++..+..+.  ++|+.|++++|+++ .+|..+..+++|++|++++|+++...+.
T Consensus       386 l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~  462 (520)
T 2z7x_B          386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDG  462 (520)
T ss_dssp             CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred             CCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHH
Confidence            988 666544 689999999999999877666554  79999999999999 6777777999999999999999954334


Q ss_pred             hhccCCCCCeEEccCcccccccC
Q 046000          443 QFCQLRRLGVMDLSHNRINGSIP  465 (470)
Q Consensus       443 ~~~~l~~L~~l~l~~n~~~~~~p  465 (470)
                      .+..+++|+.|++++|++++..+
T Consensus       463 ~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          463 IFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             TTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HhccCCcccEEECcCCCCcccCC
Confidence            58999999999999999997655

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2e-43  Score=351.93  Aligned_cols=416  Identities=17%  Similarity=0.229  Sum_probs=266.7

Q ss_pred             ccccccccccccCCCCchHhhhcCCCCcEEEccCCccc------c------ccchhhhcCcCCcEEecc-----------
Q 046000           31 QESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLS------G------SLPSVIVNLASVEYLDLS-----------   87 (470)
Q Consensus        31 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~------~------~~~~~~~~l~~L~~L~l~-----------   87 (470)
                      ..++.|+|+++.+.+.+|.+++++++|++|+|++|.+.      +      .+|...  +.+|+ ++++           
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence            46889999999999999999999999999999999651      1      111111  11122 2222           


Q ss_pred             ----------------------------------CccCcCccChhhhccccccceecccCCCCcccccccc---------
Q 046000           88 ----------------------------------NSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTE---------  124 (470)
Q Consensus        88 ----------------------------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---------  124 (470)
                                                        +|.+++ +| ..+.++++|++|++++|.+........         
T Consensus       158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~  235 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VS-KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA  235 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-EC-GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred             HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CC-HHHhcccCCCEEECcCCccccccccccccccccchh
Confidence                                              345554 44 456777777777777776553100000         


Q ss_pred             --CCCCccc--ccCcccEEEccCccccCccchHhhhcCCCCcEEEccccc-cCC-ccCCCCCCC------CcccEEeccC
Q 046000          125 --NFLPTFQ--LKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNS-FTG-NLQLPHSKH------DFLHHLDVSS  192 (470)
Q Consensus       125 --~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~-i~~-~~~~~~~~~------~~L~~L~l~~  192 (470)
                        .++..+.  .+++|++|++++|.+.+.+|..+ .++++|+.|++++|. +++ ..+..+..+      ++|++|++++
T Consensus       236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~  314 (636)
T 4eco_A          236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY  314 (636)
T ss_dssp             HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred             cccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence              0444555  66777777777777766666443 467777777777776 554 344444433      6777777777


Q ss_pred             CcccCCCCc-chhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCc-ccEEecCCCcCCC
Q 046000          193 NNFTGKLPQ-DKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVS-LWFLDRSHNNFHD  270 (470)
Q Consensus       193 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~  270 (470)
                      |.+. .+|. ..+..+++|++|++++|.+.+.+| .+..+++|+.|++++|.+. ..+..+..+++ |++|++++|.+. 
T Consensus       315 n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-  390 (636)
T 4eco_A          315 NNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-  390 (636)
T ss_dssp             SCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred             CcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence            7776 6665 123336677777777777765566 6667777777777777766 45555666666 777777777766 


Q ss_pred             cchhhhcCc--ccccEEEccccccccccchhhc-------CCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcc
Q 046000          271 QIFPKYMNL--TRLWFLYLDNNKFSGKIEDGLL-------KSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFL  341 (470)
Q Consensus       271 ~~~~~~~~~--~~L~~l~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~  341 (470)
                      ..+..+...  ++|+.+++++|.+.+..+..+.       .+++|+.|++++|.+. .+|..+....+.++.|++++|.+
T Consensus       391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l  469 (636)
T 4eco_A          391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNML  469 (636)
T ss_dssp             SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCC
T ss_pred             ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCC
Confidence            334444433  3677777777777665555555       5567777777777776 55655554333477777777777


Q ss_pred             cCCCchhh-hcc-------CCCeEEEccCccccCcccccc--ccCcccEEEccCCcccccCccchhcCCCccEEEc----
Q 046000          342 KGNIPMQL-LNH-------GSLQLLSVSENCLSGFMTSSF--SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDL----  407 (470)
Q Consensus       342 ~~~~~~~~-~~~-------~~L~~L~l~~~~l~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l----  407 (470)
                      + .+|... ...       ++|+.|++++|.++.++...+  .+++|++|++++|++.+ +|..+..+++|+.|++    
T Consensus       470 ~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~  547 (636)
T 4eco_A          470 T-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR  547 (636)
T ss_dssp             S-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB
T ss_pred             C-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc
Confidence            6 444332 222       267777777777776666655  67777777777777775 5666667777777777    


Q ss_pred             --CCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCccccc
Q 046000          408 --RDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRING  462 (470)
Q Consensus       408 --~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~  462 (470)
                        ++|++.+.+|..+..+++|++|++++|+++ .+|..+.  ++|+.|++++|+++.
T Consensus       548 ~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred             ccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcc
Confidence              345566667777777777777777777773 5565544  677777777777664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=7.4e-43  Score=347.76  Aligned_cols=440  Identities=17%  Similarity=0.191  Sum_probs=311.3

Q ss_pred             cccccccCCCcCceeeccCCCCC------C-------ccc--cccccccccccccCCCCchHhhhcC-------------
Q 046000            3 FLGAGLHKLKNLEALDLSFNNIN------G-------TVE--SQESFELNLAKNNIGGHLLDCLNNM-------------   54 (470)
Q Consensus         3 ~l~~~l~~~~~L~~L~ls~~~~~------~-------~~~--~~~L~~L~l~~~~~~~~~~~~~~~~-------------   54 (470)
                      .+|++++++++|++|||++|.+.      +       .+.  ...++ ++++++.+.+.++..++.+             
T Consensus        96 ~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~  174 (636)
T 4eco_A           96 RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKS  174 (636)
T ss_dssp             EECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCC
T ss_pred             cCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccc
Confidence            57889999999999999999651      1       000  33444 5666555555555444311             


Q ss_pred             ------CCCcEEEcc--CCccccccchhhhcCcCCcEEeccCccCcCc-----------------cChhhhc--cccccc
Q 046000           55 ------TRLKVLDTS--FNQLSGSLPSVIVNLASVEYLDLSNSYFEGT-----------------FPISSLA--NHSKLK  107 (470)
Q Consensus        55 ------~~L~~L~l~--~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~~l~--~~~~L~  107 (470)
                            ..++.+.+.  .|.+++ +|+.++++++|++|++++|.+++.                 +| ..+.  ++++|+
T Consensus       175 ~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip-~~l~~~~l~~L~  252 (636)
T 4eco_A          175 IKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-EDLKWDNLKDLT  252 (636)
T ss_dssp             CCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCC
T ss_pred             cccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc-hhhhhcccCCCC
Confidence                  111111121  455665 666777777777777777777653                 44 3445  677777


Q ss_pred             eecccCCCCccccccccCCCCcccccCcccEEEccCcc-ccC-ccchHhhh-----cCCCCcEEEccccccCCccCC--C
Q 046000          108 VLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNN-LAG-DFPAWILQ-----NNTKLEVLCLTNNSFTGNLQL--P  178 (470)
Q Consensus       108 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~-~~~~~~~~-----~~~~L~~L~l~~~~i~~~~~~--~  178 (470)
                      +|++++|.+..      .++..+..+++|++|++++|. +++ .+|..+..     .+++|+.|++++|.++ ..+.  .
T Consensus       253 ~L~L~~n~l~~------~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~  325 (636)
T 4eco_A          253 DVEVYNCPNLT------KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS  325 (636)
T ss_dssp             EEEEECCTTCS------SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred             EEEecCCcCCc------cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence            77777665431      233456666777888888777 665 56665432     2377888888888777 4455  6


Q ss_pred             CCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCC-ccEEEccccccccccCccccCC--
Q 046000          179 HSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKT-LTFLHLSKNNFSGELSTLFTGC--  255 (470)
Q Consensus       179 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~l--  255 (470)
                      +..+++|++|++++|.+.+.+|  .+..+++|++|++++|.+. .+|..+..+++ |+.|++++|.+. ..+..+...  
T Consensus       326 l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l  401 (636)
T 4eco_A          326 LQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSV  401 (636)
T ss_dssp             HTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCS
T ss_pred             hccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhccc
Confidence            7777888888888888777777  3344778888888888877 66777888888 888888888877 455555554  


Q ss_pred             CcccEEecCCCcCCCcchhhhc-------CcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhh
Q 046000          256 VSLWFLDRSHNNFHDQIFPKYM-------NLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFS  328 (470)
Q Consensus       256 ~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  328 (470)
                      ++|++|++++|.+....+..+.       .+++|+.|++++|.+.......+..+++|+.|++++|.+. .+|.......
T Consensus       402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~  480 (636)
T 4eco_A          402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDE  480 (636)
T ss_dssp             SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEET
T ss_pred             CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccc
Confidence            3788888888888776666666       6778888999888888555555667888999999999888 6666554433


Q ss_pred             c-------cccEEEcCCCcccCCCchhhh--ccCCCeEEEccCccccCccccccccCcccEEEc------cCCcccccCc
Q 046000          329 S-------YLEVLLMSKNFLKGNIPMQLL--NHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYV------QRNDLSGTIP  393 (470)
Q Consensus       329 ~-------~l~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l------~~~~l~~~~~  393 (470)
                      .       .++.|++++|.++ .+|..+.  .+++|+.|++++|.+..++.....+++|++|++      ++|.+.+..|
T Consensus       481 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p  559 (636)
T 4eco_A          481 NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP  559 (636)
T ss_dssp             TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred             cccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence            1       4899999999998 7777776  899999999999999987777778999999999      4677788899


Q ss_pred             cchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCccc-----chhhcc---CCCCCeEEccCcccc
Q 046000          394 NALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPI-----SNQFCQ---LRRLGVMDLSHNRIN  461 (470)
Q Consensus       394 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~-----~~~~~~---l~~L~~l~l~~n~~~  461 (470)
                      ..+..+++|+.|++++|++. .+|..+.  ++|++|++++|++....     |.....   +...+..++.+|+..
T Consensus       560 ~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L  632 (636)
T 4eco_A          560 EGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDAL  632 (636)
T ss_dssp             TTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCGGG
T ss_pred             HHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCccc
Confidence            99999999999999999995 6676654  89999999999887533     222222   233345566677543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=4.2e-42  Score=347.59  Aligned_cols=423  Identities=18%  Similarity=0.205  Sum_probs=283.4

Q ss_pred             ccccccccccccCCCCchHhhhcCCCCcEEEc-cCCccccccchh-----------------------------------
Q 046000           31 QESFELNLAKNNIGGHLLDCLNNMTRLKVLDT-SFNQLSGSLPSV-----------------------------------   74 (470)
Q Consensus        31 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l-~~~~i~~~~~~~-----------------------------------   74 (470)
                      ..++.|+|+++.+.+.+|.+|+++++|++|+| ++|.+.+..+..                                   
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            46889999999999999999999999999999 777654331100                                   


Q ss_pred             -----h-----------hcCcCCcEEecc--CccCcCccChhhhccccccceecccCCCCccccccc--c---------C
Q 046000           75 -----I-----------VNLASVEYLDLS--NSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKT--E---------N  125 (470)
Q Consensus        75 -----~-----------~~l~~L~~L~l~--~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~---------~  125 (470)
                           +           .....++.+.+.  +|.+++ +| ..+.++++|+.|++++|.+.......  .         .
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP-~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~  480 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-IS-KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY  480 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-EC-GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hh-HHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence                 0           001112222222  245554 55 45777777777777777665310000  0         1


Q ss_pred             CCCccc--ccCcccEEEccCccccCccchHhhhcCCCCcEEEccccc-cCC-ccCC-------CCCCCCcccEEeccCCc
Q 046000          126 FLPTFQ--LKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNS-FTG-NLQL-------PHSKHDFLHHLDVSSNN  194 (470)
Q Consensus       126 ~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~-i~~-~~~~-------~~~~~~~L~~L~l~~~~  194 (470)
                      ++..+.  .+++|++|++++|.+.+.+|.. +..+++|+.|++++|+ +++ ..+.       .+..+++|++|++++|.
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            344444  6777888888887777677754 3477778888887776 554 2333       23344578888888887


Q ss_pred             ccCCCCc-chhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCc-ccEEecCCCcCCCcc
Q 046000          195 FTGKLPQ-DKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVS-LWFLDRSHNNFHDQI  272 (470)
Q Consensus       195 ~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~  272 (470)
                      +. .+|. ..+..+++|+.|++++|.+. .+| .|..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+. .+
T Consensus       560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l  634 (876)
T 4ecn_A          560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI  634 (876)
T ss_dssp             CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred             CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence            77 6666 23334777888888888777 556 6777788888888888777 55556777777 888888888776 34


Q ss_pred             hhhhcCcc--cccEEEccccccccccchh---hc--CCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCC
Q 046000          273 FPKYMNLT--RLWFLYLDNNKFSGKIEDG---LL--KSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNI  345 (470)
Q Consensus       273 ~~~~~~~~--~L~~l~l~~~~~~~~~~~~---~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~  345 (470)
                      +..+...+  +|+.|++++|.+.+..+..   +.  ..++|+.|++++|.+. .+|..+....+.++.|++++|.+. .+
T Consensus       635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~i  712 (876)
T 4ecn_A          635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SI  712 (876)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CC
T ss_pred             chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-cc
Confidence            44444443  3788888887776543321   11  3347788888888877 666666544444888888888776 44


Q ss_pred             chhhhc--------cCCCeEEEccCccccCcccccc--ccCcccEEEccCCcccccCccchhcCCCccEEEcCC------
Q 046000          346 PMQLLN--------HGSLQLLSVSENCLSGFMTSSF--SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRD------  409 (470)
Q Consensus       346 ~~~~~~--------~~~L~~L~l~~~~l~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~------  409 (470)
                      |..+..        +++|+.|++++|.+..++...+  .+++|+.|++++|.+.+ +|..+..+++|+.|++++      
T Consensus       713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~  791 (876)
T 4ecn_A          713 PENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEG  791 (876)
T ss_dssp             CTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTC
T ss_pred             ChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccc
Confidence            443322        2378888888888887776665  67888888888888875 566777788888888865      


Q ss_pred             ccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccCCC
Q 046000          410 NGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSC  467 (470)
Q Consensus       410 n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~  467 (470)
                      |.+.+.+|..+..+++|++|+|++|++ +.+|..+.  ++|+.|++++|+++..-|..
T Consensus       792 N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~  846 (876)
T 4ecn_A          792 NRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTS  846 (876)
T ss_dssp             CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGG
T ss_pred             ccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHH
Confidence            666667777788888888888888888 46676654  58888888888877555443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=8.7e-42  Score=336.64  Aligned_cols=420  Identities=18%  Similarity=0.181  Sum_probs=332.7

Q ss_pred             cccccCCCcCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccc-cchhhhcC
Q 046000            5 GAGLHKLKNLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGS-LPSVIVNL   78 (470)
Q Consensus         5 ~~~l~~~~~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~l   78 (470)
                      |.+++++++|++|++++|++.+..+     +++|++|++++|.+++..+.+|+++++|++|++++|.+.+. .|..+..+
T Consensus        43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l  122 (549)
T 2z81_A           43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL  122 (549)
T ss_dssp             SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred             hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence            5779999999999999999976653     88999999999999998888899999999999999999853 56789999


Q ss_pred             cCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcC
Q 046000           79 ASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNN  158 (470)
Q Consensus        79 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~  158 (470)
                      ++|++|++++|.+.+..+...+..+++|++|++++|.+...      .+..+..+++|++|+++++.+. .++..++..+
T Consensus       123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l  195 (549)
T 2z81_A          123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY------QSQSLKSIRDIHHLTLHLSESA-FLLEIFADIL  195 (549)
T ss_dssp             TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE------CTTTTTTCSEEEEEEEECSBST-THHHHHHHST
T ss_pred             CCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc------ChhhhhccccCceEecccCccc-ccchhhHhhc
Confidence            99999999999866677767899999999999999877632      2345677789999999999887 7787777789


Q ss_pred             CCCcEEEccccccCCccC---CCCCCCCcccEEeccCCcccCCCCcchh---hhhccCceeeccCCccCCC---------
Q 046000          159 TKLEVLCLTNNSFTGNLQ---LPHSKHDFLHHLDVSSNNFTGKLPQDKG---IILQKLLYIDMANNRFEGN---------  223 (470)
Q Consensus       159 ~~L~~L~l~~~~i~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~---------  223 (470)
                      ++|+.|++++|.+.+...   .....+++|+.|+++++.+.+..+..+.   ..++.|+.+++++|.+.+.         
T Consensus       196 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~  275 (549)
T 2z81_A          196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESD  275 (549)
T ss_dssp             TTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTT
T ss_pred             ccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchh
Confidence            999999999999886421   2223466777888777766532222111   1234555555555543321         


Q ss_pred             --------------------------CchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchh---
Q 046000          224 --------------------------LPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFP---  274 (470)
Q Consensus       224 --------------------------~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---  274 (470)
                                                .+..+...++|+.|++++|.+.......+..+++|++|++++|.+.+..+.   
T Consensus       276 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  355 (549)
T 2z81_A          276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA  355 (549)
T ss_dssp             CCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHT
T ss_pred             hhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchh
Confidence                                      111123346788888888887744444446799999999999999875533   


Q ss_pred             hhcCcccccEEEccccccccccc--hhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhcc
Q 046000          275 KYMNLTRLWFLYLDNNKFSGKIE--DGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNH  352 (470)
Q Consensus       275 ~~~~~~~L~~l~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~  352 (470)
                      .++.+++|+.|++++|.+.+...  ..+..+++|++|++++|.+. .+|..+..... +++|++++|.+. .++..+  .
T Consensus       356 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~-L~~L~Ls~N~l~-~l~~~~--~  430 (549)
T 2z81_A          356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEK-MRFLNLSSTGIR-VVKTCI--P  430 (549)
T ss_dssp             CTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTT-CCEEECTTSCCS-CCCTTS--C
T ss_pred             hhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccccc-ccEEECCCCCcc-cccchh--c
Confidence            36788999999999999986543  45788999999999999998 77776666555 999999999987 444443  3


Q ss_pred             CCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEcc
Q 046000          353 GSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLR  432 (470)
Q Consensus       353 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  432 (470)
                      ++|++|++++|.+++.+   ..+++|++|++++|+++ .+|. ...+++|+.|++++|++++..++.+..+++|++|+++
T Consensus       431 ~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~  505 (549)
T 2z81_A          431 QTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH  505 (549)
T ss_dssp             TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred             CCceEEECCCCChhhhc---ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEec
Confidence            68999999999998765   35899999999999998 4554 4578999999999999998888889999999999999


Q ss_pred             CcccCcccc
Q 046000          433 GNYLEGPIS  441 (470)
Q Consensus       433 ~n~i~~~~~  441 (470)
                      +|++.+..+
T Consensus       506 ~N~~~~~~~  514 (549)
T 2z81_A          506 TNPWDCSCP  514 (549)
T ss_dssp             SSCBCCCHH
T ss_pred             CCCccCCCc
Confidence            999987555

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.5e-41  Score=332.52  Aligned_cols=417  Identities=18%  Similarity=0.174  Sum_probs=323.2

Q ss_pred             CcccccccCCCcCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhh
Q 046000            2 LFLGAGLHKLKNLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIV   76 (470)
Q Consensus         2 ~~l~~~l~~~~~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~   76 (470)
                      ..+|..+.  ++|++|++++|.+.+..+     +++|++|++++|.+++..|.+|+++++|++|++++|.++ .+|..  
T Consensus        13 ~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--   87 (520)
T 2z7x_B           13 IHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--   87 (520)
T ss_dssp             SSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--
T ss_pred             cccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--
Confidence            34666555  899999999999987754     899999999999999888999999999999999999998 56655  


Q ss_pred             cCcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcc--cEEEccCccc--cCccch
Q 046000           77 NLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDL--KYLDLSHNNL--AGDFPA  152 (470)
Q Consensus        77 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~i--~~~~~~  152 (470)
                      .+++|++|++++|.+.+......+.++++|++|++++|.+..         ..+..+++|  ++|++++|.+  .+..|.
T Consensus        88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~  158 (520)
T 2z7x_B           88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---------SSVLPIAHLNISKVLLVLGETYGEKEDPE  158 (520)
T ss_dssp             CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---------GGGGGGTTSCEEEEEEEECTTTTSSCCTT
T ss_pred             ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---------hhccccccceeeEEEeecccccccccccc
Confidence            899999999999999853222689999999999999988763         124455666  9999999988  544444


Q ss_pred             Hhh-------------------------hcCCCCcEEEccccc-------cCCccCCCCCCCCcccEEeccCCcccCCCC
Q 046000          153 WIL-------------------------QNNTKLEVLCLTNNS-------FTGNLQLPHSKHDFLHHLDVSSNNFTGKLP  200 (470)
Q Consensus       153 ~~~-------------------------~~~~~L~~L~l~~~~-------i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  200 (470)
                      .+.                         ..+++|+.+++++|.       +.+..+ .+..+++|+.|+++++.+.+..+
T Consensus       159 ~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~  237 (520)
T 2z7x_B          159 GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSF  237 (520)
T ss_dssp             TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHH
T ss_pred             cccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHH
Confidence            322                         224455555555543       221111 34556666777776665543222


Q ss_pred             cchhh--hhccCceeeccCCccCCCCchhh-----cCCCCccEEEccccccccccCccccCC---CcccEEecCCCcCCC
Q 046000          201 QDKGI--ILQKLLYIDMANNRFEGNLPSSI-----GDMKTLTFLHLSKNNFSGELSTLFTGC---VSLWFLDRSHNNFHD  270 (470)
Q Consensus       201 ~~~~~--~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~  270 (470)
                      .....  ..++|++|++++|.+.+.+|..+     ..++.|+.++++++.+ ......+..+   .+|+.|++++|.+..
T Consensus       238 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~  316 (520)
T 2z7x_B          238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVH  316 (520)
T ss_dssp             HHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred             HHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccc
Confidence            21111  13589999999999987888887     8999999999999988 3332333333   579999999998865


Q ss_pred             cchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccC--CcchhHHhhhccccEEEcCCCcccCCCchh
Q 046000          271 QIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSG--HIPHWIANFSSYLEVLLMSKNFLKGNIPMQ  348 (470)
Q Consensus       271 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~  348 (470)
                      ...  +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+  .+|..+..+.. ++.|++++|.+.+.+|..
T Consensus       317 ~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~-L~~L~Ls~N~l~~~l~~~  393 (520)
T 2z7x_B          317 MLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS-LQQLDISQNSVSYDEKKG  393 (520)
T ss_dssp             CCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTT-CCEEECCSSCCBCCGGGC
T ss_pred             ccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCC-CCEEECCCCcCCcccccc
Confidence            432  2578999999999999998778888999999999999999984  44566666666 999999999998756654


Q ss_pred             -hhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCc
Q 046000          349 -LLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLR  427 (470)
Q Consensus       349 -~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~  427 (470)
                       +..+++|+.|++++|.+++..+..+. ++|++|++++|+++ .+|..+..+++|+.|++++|+++...+..+..+++|+
T Consensus       394 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~  471 (520)
T 2z7x_B          394 DCSWTKSLLSLNMSSNILTDTIFRCLP-PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ  471 (520)
T ss_dssp             SCCCCTTCCEEECCSSCCCGGGGGSCC-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hhccCccCCEEECcCCCCCcchhhhhc-ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCccc
Confidence             77889999999999998755443322 79999999999999 6777777999999999999999954444488999999


Q ss_pred             EEEccCcccCcc
Q 046000          428 VLLLRGNYLEGP  439 (470)
Q Consensus       428 ~L~l~~n~i~~~  439 (470)
                      +|++++|++.+.
T Consensus       472 ~L~l~~N~~~c~  483 (520)
T 2z7x_B          472 KIWLHTNPWDCS  483 (520)
T ss_dssp             EEECCSSCBCCC
T ss_pred             EEECcCCCCccc
Confidence            999999999863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=9.1e-41  Score=337.83  Aligned_cols=399  Identities=18%  Similarity=0.173  Sum_probs=325.2

Q ss_pred             CCCcEEEccCCccccccchhhhcCcCCcEEec-cCccCcCccChhhhc--------------------------------
Q 046000           55 TRLKVLDTSFNQLSGSLPSVIVNLASVEYLDL-SNSYFEGTFPISSLA--------------------------------  101 (470)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l-~~~~~~~~~~~~~l~--------------------------------  101 (470)
                      .+++.|+|+++.+.+.+|..++++++|++|+| ++|.+.|..+.....                                
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            57999999999999999999999999999999 888765442211000                                


Q ss_pred             ------------------cccccceecccC--CCCccccccccCCCCcccccCcccEEEccCccccC-------------
Q 046000          102 ------------------NHSKLKVLRLSS--RNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAG-------------  148 (470)
Q Consensus       102 ------------------~~~~L~~L~l~~--~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-------------  148 (470)
                                        ....++.+.+..  |.+.       .++..+..+++|++|++++|.+++             
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~-------~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n  475 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT-------FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD  475 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEE-------EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSH
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCccc-------chhHHHhcCCCCCEEECcCCcCCCCcccccccccccc
Confidence                              001112222221  1111       245678899999999999999996             


Q ss_pred             ----ccchHh-hhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCc-ccC-CCCcchhh------hhccCceeec
Q 046000          149 ----DFPAWI-LQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNN-FTG-KLPQDKGI------ILQKLLYIDM  215 (470)
Q Consensus       149 ----~~~~~~-~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~------~~~~L~~L~l  215 (470)
                          .+|..+ +..+++|+.|++++|.+.+..+..+..+++|+.|++++|. +.+ .+|..+..      .+++|++|++
T Consensus       476 ~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~L  555 (876)
T 4ecn_A          476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM  555 (876)
T ss_dssp             HHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEEC
T ss_pred             cccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEe
Confidence                277765 4589999999999999888888889999999999999998 776 67765544      1349999999


Q ss_pred             cCCccCCCCch--hhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCccc-ccEEEcccccc
Q 046000          216 ANNRFEGNLPS--SIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTR-LWFLYLDNNKF  292 (470)
Q Consensus       216 ~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~l~l~~~~~  292 (470)
                      ++|.+. .+|.  .+..+++|+.|++++|.+. ..+ .+..+++|+.|++++|.+. .++..+..+++ |+.|++++|.+
T Consensus       556 s~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L  631 (876)
T 4ecn_A          556 GYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL  631 (876)
T ss_dssp             CSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCC
T ss_pred             eCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCC
Confidence            999999 7887  8999999999999999998 555 8899999999999999998 56667888998 99999999999


Q ss_pred             ccccchhhcCCC--CccEEECCCCcccCCcchhH---Hhh-hccccEEEcCCCcccCCCchhh-hccCCCeEEEccCccc
Q 046000          293 SGKIEDGLLKSN--QLKELDMSNNMLSGHIPHWI---ANF-SSYLEVLLMSKNFLKGNIPMQL-LNHGSLQLLSVSENCL  365 (470)
Q Consensus       293 ~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~---~~~-~~~l~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~l  365 (470)
                      . ..+..+...+  +|+.|++++|.+.+.+|...   ..+ ..+++.|++++|.+. .+|..+ ..+++|+.|++++|.+
T Consensus       632 ~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L  709 (876)
T 4ecn_A          632 K-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLM  709 (876)
T ss_dssp             C-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCC
T ss_pred             C-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcC
Confidence            8 5566666554  49999999999987655322   111 124999999999998 566554 5889999999999999


Q ss_pred             cCcccccccc--------CcccEEEccCCcccccCccchh--cCCCccEEEcCCccceeecchhhhcCCCCcEEEccC--
Q 046000          366 SGFMTSSFSL--------SSLVHLYVQRNDLSGTIPNALF--RSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRG--  433 (470)
Q Consensus       366 ~~~~~~~~~~--------~~L~~L~l~~~~l~~~~~~~l~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~--  433 (470)
                      ..++...+..        ++|++|++++|++. .+|..+.  .+++|+.|++++|++.+ +|..+..+++|+.|+|++  
T Consensus       710 ~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~  787 (876)
T 4ecn_A          710 TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR  787 (876)
T ss_dssp             SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB
T ss_pred             CccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC
Confidence            9888777632        39999999999999 6677776  89999999999999996 788899999999999976  


Q ss_pred             ----cccCcccchhhccCCCCCeEEccCcccccccCCCcc
Q 046000          434 ----NYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFT  469 (470)
Q Consensus       434 ----n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~  469 (470)
                          |.+.+.+|..+..+++|+.|++++|++ +.+|..+.
T Consensus       788 ~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~  826 (876)
T 4ecn_A          788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT  826 (876)
T ss_dssp             CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred             CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence                778889999999999999999999999 69998753

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.3e-40  Score=325.42  Aligned_cols=436  Identities=19%  Similarity=0.207  Sum_probs=322.6

Q ss_pred             CCCcCceeeccCCCCCCccc--cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEecc
Q 046000           10 KLKNLEALDLSFNNINGTVE--SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLS   87 (470)
Q Consensus        10 ~~~~L~~L~ls~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~   87 (470)
                      .+...+++|++++.++..+.  .+++++|++++|.+++..+.+|+++++|++|++++|.+++..|++|..+++|++|+++
T Consensus        29 ~~~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  108 (562)
T 3a79_B           29 SNELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS  108 (562)
T ss_dssp             ----CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred             ccCCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence            35566899999999987665  6899999999999998888999999999999999999998889999999999999999


Q ss_pred             CccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCC--cEEE
Q 046000           88 NSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKL--EVLC  165 (470)
Q Consensus        88 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L--~~L~  165 (470)
                      +|.++ .+|..   .+++|++|++++|.+....     .+..+..+++|++|++++|.+.+.    .+..++++  +.|+
T Consensus       109 ~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~-----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~  175 (562)
T 3a79_B          109 HNRLQ-NISCC---PMASLRHLDLSFNDFDVLP-----VCKEFGNLTKLTFLGLSAAKFRQL----DLLPVAHLHLSCIL  175 (562)
T ss_dssp             TSCCC-EECSC---CCTTCSEEECCSSCCSBCC-----CCGGGGGCTTCCEEEEECSBCCTT----TTGGGTTSCEEEEE
T ss_pred             CCcCC-ccCcc---ccccCCEEECCCCCccccC-----chHhhcccCcccEEecCCCccccC----chhhhhhceeeEEE
Confidence            99998 56633   8999999999999876322     234678889999999999998742    23345556  9999


Q ss_pred             cccccc--CCccCCCCCCCC-cccEEeccCCcccCCCCcchhhhhccCceeeccCCccC----CCCchhhcCC-------
Q 046000          166 LTNNSF--TGNLQLPHSKHD-FLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFE----GNLPSSIGDM-------  231 (470)
Q Consensus       166 l~~~~i--~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~l-------  231 (470)
                      +++|.+  ....+..+..+. ....+++++|.+.+..+...+..+++|+.+++++|...    ......+..+       
T Consensus       176 L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~  255 (562)
T 3a79_B          176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT  255 (562)
T ss_dssp             EEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEE
T ss_pred             eecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEE
Confidence            999988  554454444433 11244666666665555555555667777777665310    0011122333       


Q ss_pred             --------------------CCccEEEccccccccccCccc-----cCCCcccEEecCCCcCCCcchhhhc---Cccccc
Q 046000          232 --------------------KTLTFLHLSKNNFSGELSTLF-----TGCVSLWFLDRSHNNFHDQIFPKYM---NLTRLW  283 (470)
Q Consensus       232 --------------------~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~L~  283 (470)
                                          ++|+.|++++|.+.+..+..+     ..+..|+.+++..+.+ ......+.   ...+++
T Consensus       256 L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~  334 (562)
T 3a79_B          256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIK  334 (562)
T ss_dssp             EEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCS
T ss_pred             ecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcce
Confidence                                356666666666654444433     4444444444444443 11111111   125688


Q ss_pred             EEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCC--CchhhhccCCCeEEEcc
Q 046000          284 FLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGN--IPMQLLNHGSLQLLSVS  361 (470)
Q Consensus       284 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~  361 (470)
                      .+++++|.+....  ....+++|+.|++++|.+.+..+..+..+.. ++.|++++|.+++.  .|..+..+++|+.|+++
T Consensus       335 ~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~  411 (562)
T 3a79_B          335 MLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR-LQTLILQRNGLKNFFKVALMTKNMSSLETLDVS  411 (562)
T ss_dssp             EEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSS-CCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred             EEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCC-CCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence            8888888775322  1257899999999999999778887777776 99999999998852  34668889999999999


Q ss_pred             CccccC-cccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcc
Q 046000          362 ENCLSG-FMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGP  439 (470)
Q Consensus       362 ~~~l~~-~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~  439 (470)
                      +|.+.. ++...+ .+++|++|++++|++++..+..+.  ++|+.|++++|+++ .+|..+..+++|++|++++|+++. 
T Consensus       412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-  487 (562)
T 3a79_B          412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-  487 (562)
T ss_dssp             TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-
T ss_pred             CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-
Confidence            999987 666555 789999999999999866665543  79999999999998 567667799999999999999995 


Q ss_pred             cchh-hccCCCCCeEEccCcccccccCC
Q 046000          440 ISNQ-FCQLRRLGVMDLSHNRINGSIPS  466 (470)
Q Consensus       440 ~~~~-~~~l~~L~~l~l~~n~~~~~~p~  466 (470)
                      +|.. +..+++|+.|++++|++++..|.
T Consensus       488 l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          488 VPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            5554 99999999999999999976653

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4.1e-39  Score=323.66  Aligned_cols=441  Identities=19%  Similarity=0.144  Sum_probs=275.8

Q ss_pred             cCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEecc
Q 046000           13 NLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLS   87 (470)
Q Consensus        13 ~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~   87 (470)
                      ++++|||++|+|+..++     +++|++|+|++|.+++..+.+|+++++|++|+|++|+++...+.+|.++++|++|+++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            67777777777765443     6777777777777776666677777777777777777775556667777777777777


Q ss_pred             CccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCC----CcE
Q 046000           88 NSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTK----LEV  163 (470)
Q Consensus        88 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~----L~~  163 (470)
                      +|.++ ..+...+.++++|++|++++|.+....     ....+..+++|++|++++|.+++ ++...+..+.+    ...
T Consensus       133 ~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~-----~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~l~~~~~~  205 (635)
T 4g8a_A          133 ETNLA-SLENFPIGHLKTLKELNVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLS  205 (635)
T ss_dssp             TSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCC-----CCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTTCCCE
T ss_pred             CCcCC-CCChhhhhcCcccCeeccccCccccCC-----CchhhccchhhhhhcccCccccc-cccccccchhhhhhhhhh
Confidence            77776 334355677777777777777654221     22344556677777777777763 33222222222    335


Q ss_pred             EEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcch----------------------------------------
Q 046000          164 LCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDK----------------------------------------  203 (470)
Q Consensus       164 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----------------------------------------  203 (470)
                      ++++.+.+.......+ ....++.+.+.++......+...                                        
T Consensus       206 ~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~  284 (635)
T 4g8a_A          206 LDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE  284 (635)
T ss_dssp             EECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEE
T ss_pred             hhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhh
Confidence            5666665543222222 22233444443332110000000                                        


Q ss_pred             -----------------hhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCc----------------
Q 046000          204 -----------------GIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELST----------------  250 (470)
Q Consensus       204 -----------------~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----------------  250 (470)
                                       +.....++.+.+.++.+...  ..+.....++.|++.++.+......                
T Consensus       285 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~  362 (635)
T 4g8a_A          285 EFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG  362 (635)
T ss_dssp             EEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSC
T ss_pred             hhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCC
Confidence                             11112233333333322211  1233445566666666544322211                


Q ss_pred             ---cccCCCcccEEecCCCcCCCc--chhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHH
Q 046000          251 ---LFTGCVSLWFLDRSHNNFHDQ--IFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIA  325 (470)
Q Consensus       251 ---~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  325 (470)
                         ....+++|++++++.|.+...  ....+....+++.+++..+.... ....+..+++|+.+++..+......+....
T Consensus       363 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~  441 (635)
T 4g8a_A          363 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF  441 (635)
T ss_dssp             CBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTT
T ss_pred             CCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccc
Confidence               112355666666666655331  22334455666666666665542 334456677788888877765544443333


Q ss_pred             hhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCcccc-Ccccccc-ccCcccEEEccCCcccccCccchhcCCCcc
Q 046000          326 NFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLS-GFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLM  403 (470)
Q Consensus       326 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~  403 (470)
                      .....++.++++.|.+....+..+..++.++.|++++|.+. ...+..+ .+++|++|++++|++.+..|..+.++++|+
T Consensus       442 ~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~  521 (635)
T 4g8a_A          442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ  521 (635)
T ss_dssp             TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             ccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCC
Confidence            33334888888888888777777888889999999888643 3344444 688899999999999888888888899999


Q ss_pred             EEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccC-CCCCeEEccCccccccc
Q 046000          404 TLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQL-RRLGVMDLSHNRINGSI  464 (470)
Q Consensus       404 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~l~l~~n~~~~~~  464 (470)
                      +|+|++|++++..+..+.++++|++|++++|++++..|..+..+ ++|+.|++++|+++...
T Consensus       522 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  583 (635)
T ss_dssp             EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred             EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence            99999999988778888889999999999999988888888887 58999999999887643

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5.9e-39  Score=308.95  Aligned_cols=368  Identities=20%  Similarity=0.206  Sum_probs=225.3

Q ss_pred             CCCcEEEccCCccccccchhhhcCcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccC
Q 046000           55 TRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKH  134 (470)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  134 (470)
                      ++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+...+..+++|++|++++|.+...      .+..+..++
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~  103 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL------ETGAFNGLA  103 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE------CTTTTTTCT
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc------ChhhccCcc
Confidence            55666666666666555666666666666666666655444444455555555555555443311      122344556


Q ss_pred             cccEEEccCccccCccch-HhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCcee
Q 046000          135 DLKYLDLSHNNLAGDFPA-WILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYI  213 (470)
Q Consensus       135 ~L~~L~l~~~~i~~~~~~-~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  213 (470)
                      +|++|++++|.+.+.++. ..+..+++|++|++++|.+...                        .|...+..+++|++|
T Consensus       104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~------------------------~~~~~~~~l~~L~~L  159 (455)
T 3v47_A          104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI------------------------QPASFFLNMRRFHVL  159 (455)
T ss_dssp             TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC------------------------CCCGGGGGCTTCCEE
T ss_pred             cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCcc------------------------CcccccCCCCcccEE
Confidence            667777777766532222 1233445555555555554433                        333323334444444


Q ss_pred             eccCCccCCCCchhhcCC--CCccEEEccccccccccCcc--------ccCCCcccEEecCCCcCCCcchhhhcC---cc
Q 046000          214 DMANNRFEGNLPSSIGDM--KTLTFLHLSKNNFSGELSTL--------FTGCVSLWFLDRSHNNFHDQIFPKYMN---LT  280 (470)
Q Consensus       214 ~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~--------~~~l~~L~~L~l~~~~~~~~~~~~~~~---~~  280 (470)
                      ++++|.+.+..+..+..+  ..++.++++++.+....+..        +..+++|++|++++|.+....+..+..   .+
T Consensus       160 ~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~  239 (455)
T 3v47_A          160 DLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT  239 (455)
T ss_dssp             ECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTC
T ss_pred             eCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccccc
Confidence            444444443333333332  34555555555444332221        223456666666666665544444432   25


Q ss_pred             cccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhh-hccccEEEcCCCcccCCCchhhhccCCCeEEE
Q 046000          281 RLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANF-SSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLS  359 (470)
Q Consensus       281 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~  359 (470)
                      +++.++++++...+....              .+.+.+.....+... ...++.+++++|.+.+..+..+..+++|+.|+
T Consensus       240 ~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  305 (455)
T 3v47_A          240 KIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT  305 (455)
T ss_dssp             CEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             ceeeEeeccccccccccc--------------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEE
Confidence            666666666544321110              001110111111111 12377888888888777777888888899999


Q ss_pred             ccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc
Q 046000          360 VSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG  438 (470)
Q Consensus       360 l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~  438 (470)
                      +++|.+.+.++..+ .+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+..+..+++|++|++++|++++
T Consensus       306 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  385 (455)
T 3v47_A          306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS  385 (455)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc
Confidence            99998888766555 78899999999999887778888888999999999999988778888889999999999999987


Q ss_pred             ccchhhccCCCCCeEEccCcccccccCC
Q 046000          439 PISNQFCQLRRLGVMDLSHNRINGSIPS  466 (470)
Q Consensus       439 ~~~~~~~~l~~L~~l~l~~n~~~~~~p~  466 (470)
                      ..+..+..+++|+.|++++|++++.+|.
T Consensus       386 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          386 VPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCHhHhccCCcccEEEccCCCcccCCCc
Confidence            7777788889999999999999988874

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.2e-37  Score=313.08  Aligned_cols=453  Identities=20%  Similarity=0.122  Sum_probs=314.6

Q ss_pred             ccccccCCCc---CceeeccCCCCCCccc--cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcC
Q 046000            4 LGAGLHKLKN---LEALDLSFNNINGTVE--SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNL   78 (470)
Q Consensus         4 l~~~l~~~~~---L~~L~ls~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l   78 (470)
                      +|+....|..   -+..+.++-.++.++.  .+++++|+|++|.+++..+.+|+++++|++|+|++|.|+.+.+.+|.++
T Consensus        20 ~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L   99 (635)
T 4g8a_A           20 IPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL   99 (635)
T ss_dssp             -----CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred             CCCCCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCC
Confidence            4444444432   3456777777877766  4689999999999998888899999999999999999998888899999


Q ss_pred             cCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcC
Q 046000           79 ASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNN  158 (470)
Q Consensus        79 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~  158 (470)
                      ++|++|+|++|++. ..+...+.++++|++|++++|.+....      ...+..+++|++|++++|.+.....+..+..+
T Consensus       100 ~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~------~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l  172 (635)
T 4g8a_A          100 SHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLE------NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL  172 (635)
T ss_dssp             TTCCEEECTTCCCC-EECGGGGTTCTTCCEEECTTSCCCCST------TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC
T ss_pred             CCCCEEEccCCcCC-CCCHHHhcCCCCCCEEECCCCcCCCCC------hhhhhcCcccCeeccccCccccCCCchhhccc
Confidence            99999999999998 566678999999999999999876332      12467789999999999998743334456689


Q ss_pred             CCCcEEEccccccCCccCCCCCCCCc----ccEEeccCCcccCCCCcchhhhhccCceeeccCCccCC-CCchhhcCCCC
Q 046000          159 TKLEVLCLTNNSFTGNLQLPHSKHDF----LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEG-NLPSSIGDMKT  233 (470)
Q Consensus       159 ~~L~~L~l~~~~i~~~~~~~~~~~~~----L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~  233 (470)
                      ++|+.|++++|.+....+..+..+.+    ...++++.+.+. .++...+. ...++.+++.++.... ..+..+..+..
T Consensus       173 ~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~  250 (635)
T 4g8a_A          173 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAG  250 (635)
T ss_dssp             TTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTT
T ss_pred             hhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccc-ccCccccc-chhhhhhhhhcccccccccchhhcCCcc
Confidence            99999999999998766666554433    346778888776 34443333 2344555555543220 11112222332


Q ss_pred             cc---------------------------------------------------------EEEccccccccccCccccCCC
Q 046000          234 LT---------------------------------------------------------FLHLSKNNFSGELSTLFTGCV  256 (470)
Q Consensus       234 L~---------------------------------------------------------~L~l~~~~~~~~~~~~~~~l~  256 (470)
                      ++                                                         .+.+.++.+...  ..+....
T Consensus       251 l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~  328 (635)
T 4g8a_A          251 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNF  328 (635)
T ss_dssp             CEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCC
T ss_pred             cccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccch
Confidence            22                                                         222222222111  1123344


Q ss_pred             cccEEecCCCcCCCcchh-------------------hhcCcccccEEEcccccccc--ccchhhcCCCCccEEECCCCc
Q 046000          257 SLWFLDRSHNNFHDQIFP-------------------KYMNLTRLWFLYLDNNKFSG--KIEDGLLKSNQLKELDMSNNM  315 (470)
Q Consensus       257 ~L~~L~l~~~~~~~~~~~-------------------~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~  315 (470)
                      .++.|++.++.+......                   ....+++|+.+++++|.+..  ..+.......+++.+++..+.
T Consensus       329 ~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~  408 (635)
T 4g8a_A          329 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG  408 (635)
T ss_dssp             CCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS
T ss_pred             hhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccc
Confidence            555666555544322111                   11234455555555554431  122333445555555555554


Q ss_pred             ccCCcchhHHhhhccccEEEcCCCcccCCC-chhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCccc-ccC
Q 046000          316 LSGHIPHWIANFSSYLEVLLMSKNFLKGNI-PMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLS-GTI  392 (470)
Q Consensus       316 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~-~~~  392 (470)
                      .. ..+..+..... ++.+++..+...... ...+..++.++.+++++|.+.......+ .++.+++|++++|... ...
T Consensus       409 ~~-~~~~~~~~l~~-L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~  486 (635)
T 4g8a_A          409 VI-TMSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL  486 (635)
T ss_dssp             EE-EECSCCTTCTT-CCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred             cc-ccccccccccc-ccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccC
Confidence            43 22233333333 677777766654333 3456778889999999998887776666 6899999999999854 456


Q ss_pred             ccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccCCCcc
Q 046000          393 PNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFT  469 (470)
Q Consensus       393 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~  469 (470)
                      |..+..+++|+.|++++|++++..|..|.++++|++|+|++|++++..+..+..+++|++|++++|++++..|+.|.
T Consensus       487 ~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~  563 (635)
T 4g8a_A          487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ  563 (635)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTT
T ss_pred             chhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHH
Confidence            78899999999999999999999999999999999999999999998899999999999999999999999998774

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=7.2e-38  Score=301.35  Aligned_cols=388  Identities=18%  Similarity=0.146  Sum_probs=267.6

Q ss_pred             cCceeeccCCCCCCccc-cccccccccccccCCCCchHhhhcCCCCcEEEccCCcccc-ccchhhhcCcCCcEEeccCcc
Q 046000           13 NLEALDLSFNNINGTVE-SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSG-SLPSVIVNLASVEYLDLSNSY   90 (470)
Q Consensus        13 ~L~~L~ls~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~~~~l~~L~~L~l~~~~   90 (470)
                      .-+.++.+++.+...+. .+++++|++++|.+++..|.+|+++++|++|++++|.+.. ..+..|..+++|++|++++|.
T Consensus        11 ~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~   90 (455)
T 3v47_A           11 IGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ   90 (455)
T ss_dssp             ETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred             EccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence            34568888888876666 5789999999999998889999999999999999998863 446789999999999999999


Q ss_pred             CcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccc
Q 046000           91 FEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNS  170 (470)
Q Consensus        91 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~  170 (470)
                      +.+..+ ..+.++++|++|++++|.+......    ...+..+++|++|++++|.+.+..+..++..+++|+.|++++|.
T Consensus        91 l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  165 (455)
T 3v47_A           91 FLQLET-GAFNGLANLEVLTLTQCNLDGAVLS----GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK  165 (455)
T ss_dssp             TCEECT-TTTTTCTTCCEEECTTSCCBTHHHH----SSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred             cCccCh-hhccCcccCCEEeCCCCCCCccccC----cccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence            985444 6789999999999999987531111    12366778999999999999966677767889999999999999


Q ss_pred             cCCccCCCCCCC--CcccEEeccCCcccCCCCcchh-------hhhccCceeeccCCccCCCCchhhcCCCCccEEEccc
Q 046000          171 FTGNLQLPHSKH--DFLHHLDVSSNNFTGKLPQDKG-------IILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSK  241 (470)
Q Consensus       171 i~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  241 (470)
                      +.+..+..+..+  .+++.++++++.+.+..+....       ..+++|++|++++|.+.+..+..+...          
T Consensus       166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~----------  235 (455)
T 3v47_A          166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA----------  235 (455)
T ss_dssp             BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH----------
T ss_pred             ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc----------
Confidence            987766666654  6788888888877632222111       012445555555555443333333221          


Q ss_pred             cccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhh--cCCCCccEEECCCCcccCC
Q 046000          242 NNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGL--LKSNQLKELDMSNNMLSGH  319 (470)
Q Consensus       242 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~  319 (470)
                                 ....+++.|++++|........              .+.+.......+  ...++|+.+++++|.+.+.
T Consensus       236 -----------~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  290 (455)
T 3v47_A          236 -----------IAGTKIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL  290 (455)
T ss_dssp             -----------TTTCCEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE
T ss_pred             -----------ccccceeeEeeccccccccccc--------------hhhhccCcccccccccccCceEEEecCcccccc
Confidence                       0114455555554433221100              000000000011  1234566666666666544


Q ss_pred             cchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhc
Q 046000          320 IPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFR  398 (470)
Q Consensus       320 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~  398 (470)
                      .+..+..+.. ++.|++++|.+.+..+..+..+++|+.|++++|.+.+.++..+ .+++|++|++++|++.+..+..+..
T Consensus       291 ~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  369 (455)
T 3v47_A          291 LKSVFSHFTD-LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG  369 (455)
T ss_dssp             CTTTTTTCTT-CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             chhhcccCCC-CCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence            4555544444 6666666666665556667777888888888888877765554 6788888888888888777778888


Q ss_pred             CCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccc
Q 046000          399 SSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPIS  441 (470)
Q Consensus       399 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~  441 (470)
                      +++|+.|++++|++++..++.+..+++|++|++++|++.+..|
T Consensus       370 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            8888888888888887666667788888888888888876555

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2e-38  Score=312.73  Aligned_cols=416  Identities=21%  Similarity=0.200  Sum_probs=299.6

Q ss_pred             cccccccCCCcCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhc
Q 046000            3 FLGAGLHKLKNLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVN   77 (470)
Q Consensus         3 ~l~~~l~~~~~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~   77 (470)
                      .+|..+.  ++|++|++++|.+.+..+     +++|++|++++|.+++..|.+|+++++|++|++++|.++ .+|..  .
T Consensus        45 ~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~  119 (562)
T 3a79_B           45 HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--P  119 (562)
T ss_dssp             SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--C
T ss_pred             cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--c
Confidence            4565443  899999999999987764     889999999999999888999999999999999999998 55655  8


Q ss_pred             CcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcc--cEEEccCccc--cCccchH
Q 046000           78 LASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDL--KYLDLSHNNL--AGDFPAW  153 (470)
Q Consensus        78 l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~i--~~~~~~~  153 (470)
                      +++|++|++++|.+.+......+.++++|++|++++|.+...         .+..+++|  ++|++++|.+  .+..+..
T Consensus       120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---------~~~~l~~L~L~~L~L~~n~l~~~~~~~~~  190 (562)
T 3a79_B          120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---------DLLPVAHLHLSCILLDLVSYHIKGGETES  190 (562)
T ss_dssp             CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---------TTGGGTTSCEEEEEEEESSCCCCSSSCCE
T ss_pred             cccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---------chhhhhhceeeEEEeecccccccccCccc
Confidence            999999999999998533236899999999999999877531         23333445  9999999988  5444433


Q ss_pred             hhhcCC-CCcEEEccccccCCcc-CCCCCCCCcccEEeccCC----------------------------cccCCCCcch
Q 046000          154 ILQNNT-KLEVLCLTNNSFTGNL-QLPHSKHDFLHHLDVSSN----------------------------NFTGKLPQDK  203 (470)
Q Consensus       154 ~~~~~~-~L~~L~l~~~~i~~~~-~~~~~~~~~L~~L~l~~~----------------------------~~~~~~~~~~  203 (470)
                      + ..+. ..-.++++++.+.... ...+..+++|+.+++++|                            .+.+......
T Consensus       191 l-~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~  269 (562)
T 3a79_B          191 L-QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL  269 (562)
T ss_dssp             E-EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHH
T ss_pred             c-cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHH
Confidence            2 2222 1112344444433211 112233444555555444                            3221100000


Q ss_pred             h--hhhccCceeeccCCccCCCCchhh-----cCCCCccEEEccccccccccCcccc---CCCcccEEecCCCcCCCcch
Q 046000          204 G--IILQKLLYIDMANNRFEGNLPSSI-----GDMKTLTFLHLSKNNFSGELSTLFT---GCVSLWFLDRSHNNFHDQIF  273 (470)
Q Consensus       204 ~--~~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~  273 (470)
                      .  ...++|++|++++|.+.+.+|..+     ..++.|+.+++..+.+ ......+.   ...++++|++++|.+.....
T Consensus       270 ~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~  348 (562)
T 3a79_B          270 FQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVC  348 (562)
T ss_dssp             HHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC
T ss_pred             HHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCcccccC
Confidence            0  112489999999999887777766     5666666666666655 11112121   12579999999998765332


Q ss_pred             hhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccC--CcchhHHhhhccccEEEcCCCcccCCCch-hhh
Q 046000          274 PKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSG--HIPHWIANFSSYLEVLLMSKNFLKGNIPM-QLL  350 (470)
Q Consensus       274 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~~~  350 (470)
                        ...+++|+++++++|.+.+..+..+..+++|+.|++++|.+.+  .++..+..+.. ++.|++++|.+.+.+|. .+.
T Consensus       349 --~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~-L~~L~l~~N~l~~~~~~~~~~  425 (562)
T 3a79_B          349 --PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS-LETLDVSLNSLNSHAYDRTCA  425 (562)
T ss_dssp             --CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTT-CCEEECTTSCCBSCCSSCCCC
T ss_pred             --ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCC-CCEEECCCCcCCCccChhhhc
Confidence              2578999999999999987778888899999999999999874  22344555555 99999999999874554 477


Q ss_pred             ccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEE
Q 046000          351 NHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLL  430 (470)
Q Consensus       351 ~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  430 (470)
                      .+++|+.|++++|.+++..+.... ++|++|++++|+++ .+|..+..+++|+.|++++|+++...+..+..+++|+.|+
T Consensus       426 ~l~~L~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  503 (562)
T 3a79_B          426 WAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW  503 (562)
T ss_dssp             CCTTCCEEECCSSCCCGGGGSSCC-TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEE
T ss_pred             CcccCCEEECCCCCCCcchhhhhc-CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEE
Confidence            889999999999998754443322 79999999999998 5666666999999999999999954334488999999999


Q ss_pred             ccCcccCcc
Q 046000          431 LRGNYLEGP  439 (470)
Q Consensus       431 l~~n~i~~~  439 (470)
                      +++|++.+.
T Consensus       504 l~~N~~~c~  512 (562)
T 3a79_B          504 LHDNPWDCT  512 (562)
T ss_dssp             CCSCCBCCC
T ss_pred             ecCCCcCCC
Confidence            999999853

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.3e-37  Score=293.88  Aligned_cols=389  Identities=23%  Similarity=0.243  Sum_probs=156.5

Q ss_pred             CCCcCceeeccCCCCCCccc----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEe
Q 046000           10 KLKNLEALDLSFNNINGTVE----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLD   85 (470)
Q Consensus        10 ~~~~L~~L~ls~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~   85 (470)
                      +.++|++|++++|.+...+.    +++|++|++++|.+.+.+|.+++++++|+.+++..|.           ..++++|+
T Consensus         9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~-----------~~~l~~L~   77 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL-----------DRQAHELE   77 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH-----------HHTCSEEE
T ss_pred             ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh-----------ccCCCEEE
Confidence            45666777777666642222    5555555555555555555555555443111111100           01135555


Q ss_pred             ccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEE
Q 046000           86 LSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLC  165 (470)
Q Consensus        86 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~  165 (470)
                      +++|.+++ +|.    ..++|++|++++|.+....       .   ..++|++|++++|.+. .++.    ..++|++|+
T Consensus        78 l~~~~l~~-lp~----~~~~L~~L~l~~n~l~~lp-------~---~~~~L~~L~l~~n~l~-~l~~----~~~~L~~L~  137 (454)
T 1jl5_A           78 LNNLGLSS-LPE----LPPHLESLVASCNSLTELP-------E---LPQSLKSLLVDNNNLK-ALSD----LPPLLEYLG  137 (454)
T ss_dssp             CTTSCCSC-CCS----CCTTCSEEECCSSCCSSCC-------C---CCTTCCEEECCSSCCS-CCCS----CCTTCCEEE
T ss_pred             ecCCcccc-CCC----CcCCCCEEEccCCcCCccc-------c---ccCCCcEEECCCCccC-cccC----CCCCCCEEE
Confidence            55555442 221    1244555555554443211       0   0134555555555544 2221    113455555


Q ss_pred             ccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccc
Q 046000          166 LTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFS  245 (470)
Q Consensus       166 l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  245 (470)
                      +++|.+.+. + .+..+++|++|++++|.+. .+|..    .++|++|++++|.+.+ +| .++.+++|+.|++++|.+.
T Consensus       138 L~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~  208 (454)
T 1jl5_A          138 VSNNQLEKL-P-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK  208 (454)
T ss_dssp             CCSSCCSSC-C-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred             CcCCCCCCC-c-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC
Confidence            555555432 1 3455555555555555554 23322    2355555555555543 23 3555555555555555544


Q ss_pred             cccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHH
Q 046000          246 GELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIA  325 (470)
Q Consensus       246 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  325 (470)
                      .. +..   .++|++|++++|.+... + .+..+++|+.+++++|.+.+. +.   ..++|+.|++++|.+.+ +|..  
T Consensus       209 ~l-~~~---~~~L~~L~l~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-l~~~--  275 (454)
T 1jl5_A          209 KL-PDL---PLSLESIVAGNNILEEL-P-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-LPEL--  275 (454)
T ss_dssp             SC-CCC---CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-CCCC--
T ss_pred             cC-CCC---cCcccEEECcCCcCCcc-c-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-cCcc--
Confidence            31 111   13555555555555421 1 244555555555555555432 11   12455555555555542 3322  


Q ss_pred             hhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEE
Q 046000          326 NFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTL  405 (470)
Q Consensus       326 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L  405 (470)
                        ...++.+++++|.+++ ++.   ..++|+.|++++|.+.+++..   .++|++|++++|++.+ +|..   +++|+.|
T Consensus       276 --~~~L~~L~ls~N~l~~-l~~---~~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L  342 (454)
T 1jl5_A          276 --PQSLTFLDVSENIFSG-LSE---LPPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIE-LPAL---PPRLERL  342 (454)
T ss_dssp             --CTTCCEEECCSSCCSE-ESC---CCTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred             --cCcCCEEECcCCccCc-ccC---cCCcCCEEECcCCcCCcccCC---cCcCCEEECCCCcccc-cccc---CCcCCEE
Confidence              1235555555555542 111   013555555555555443211   1355555555555553 2222   3555555


Q ss_pred             EcCCccceeecchhhhcCCCCcEEEccCcccCc--ccchhhccC-------------CCCCeEEccCccccc--ccCCCc
Q 046000          406 DLRDNGFSGIISDQINESSNLRVLLLRGNYLEG--PISNQFCQL-------------RRLGVMDLSHNRING--SIPSCF  468 (470)
Q Consensus       406 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~~~~l-------------~~L~~l~l~~n~~~~--~~p~~~  468 (470)
                      ++++|+++. +|.   .+++|++|++++|++++  .+|..+..+             ++|+.|++++|++++  .+|..+
T Consensus       343 ~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl  418 (454)
T 1jl5_A          343 IASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESV  418 (454)
T ss_dssp             ECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------------------
T ss_pred             ECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhH
Confidence            555555552 333   24555555555555554  445555444             556666666666665  555544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.6e-35  Score=283.54  Aligned_cols=344  Identities=25%  Similarity=0.290  Sum_probs=209.1

Q ss_pred             cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccCccCcCccChhhhcccccccee
Q 046000           30 SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVL  109 (470)
Q Consensus        30 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  109 (470)
                      +.++++|+++++.+.. ++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+   +.++++|++|
T Consensus        45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L  117 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGL  117 (466)
T ss_dssp             HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEE
T ss_pred             hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh---hcCCCCCCEE
Confidence            6778888888888774 33 37778888888888888875443  7888888888888888774432   7778888888


Q ss_pred             cccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEe
Q 046000          110 RLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLD  189 (470)
Q Consensus       110 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~  189 (470)
                      ++++|.+....        .+..+++|++|++++|.+. .++.  +..+++|+.|++++ .+..  ..++..+++|++|+
T Consensus       118 ~L~~n~l~~~~--------~~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~-~~~~--~~~~~~l~~L~~L~  183 (466)
T 1o6v_A          118 TLFNNQITDID--------PLKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLD  183 (466)
T ss_dssp             ECCSSCCCCCG--------GGTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEEE-SCCC--CGGGTTCTTCCEEE
T ss_pred             ECCCCCCCCCh--------HHcCCCCCCEEECCCCccC-CChh--hccCCcccEeecCC-cccC--chhhccCCCCCEEE
Confidence            88877655221        2566677888888888776 4443  55677777777753 3332  22366677777777


Q ss_pred             ccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCC
Q 046000          190 VSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFH  269 (470)
Q Consensus       190 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  269 (470)
                      +++|.+. .++.  +..+++|++|++++|.+.+..+  ++.+++|+.|++++|.+...  ..+..+++|++|++++|.+.
T Consensus       184 l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~  256 (466)
T 1o6v_A          184 ISSNKVS-DISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS  256 (466)
T ss_dssp             CCSSCCC-CCGG--GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             CcCCcCC-CChh--hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccc
Confidence            7777765 3322  3346677777777777664333  55667777777777666543  23555666666666666665


Q ss_pred             CcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhh
Q 046000          270 DQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQL  349 (470)
Q Consensus       270 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~  349 (470)
                      ....  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..++. ++.|++++|.+.+..+  +
T Consensus       257 ~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~-L~~L~L~~n~l~~~~~--~  327 (466)
T 1o6v_A          257 NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKN-LTYLTLYFNNISDISP--V  327 (466)
T ss_dssp             CCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTT-CSEEECCSSCCSCCGG--G
T ss_pred             cchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCC-CCEEECcCCcCCCchh--h
Confidence            4332  5566666666666666654332  5556666666666666553222  233332 5555555555543332  3


Q ss_pred             hccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccce
Q 046000          350 LNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFS  413 (470)
Q Consensus       350 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~  413 (470)
                      ..+++|+.|++++|.+.+.+ ....+++|++|++++|++.+..|  +..+++|+.|++++|+++
T Consensus       328 ~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          328 SSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             GGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred             ccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence            45555555555555555442 12245555555555555554433  445555555555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.9e-35  Score=282.37  Aligned_cols=347  Identities=22%  Similarity=0.252  Sum_probs=262.3

Q ss_pred             hcCCCCcEEEccCCccccccchhhhcCcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCccc
Q 046000           52 NNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQ  131 (470)
Q Consensus        52 ~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  131 (470)
                      ..++++++|+++++.+.. +| .+..+++|++|++++|.+.+..+   +..+++|++|++++|.+....       + +.
T Consensus        43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~-------~-~~  109 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADIT-------P-LA  109 (466)
T ss_dssp             HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG-------G-GT
T ss_pred             hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh---hhccccCCEEECCCCccccCh-------h-hc
Confidence            456789999999999874 44 48889999999999999885432   889999999999998765322       2 67


Q ss_pred             ccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCc
Q 046000          132 LKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLL  211 (470)
Q Consensus       132 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  211 (470)
                      .+++|++|++++|.+. .++.  +..+++|+.|++++|.+...  ..+..+++|++|++++ .+. ..+.  +..+++|+
T Consensus       110 ~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~-~~~~--~~~l~~L~  180 (466)
T 1o6v_A          110 NLTNLTGLTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVT-DLKP--LANLTTLE  180 (466)
T ss_dssp             TCTTCCEEECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCC-CCGG--GTTCTTCC
T ss_pred             CCCCCCEEECCCCCCC-CChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCC-ccc-Cchh--hccCCCCC
Confidence            7889999999999988 5554  66899999999999988863  3477888999999864 333 2222  44578899


Q ss_pred             eeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccc
Q 046000          212 YIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNK  291 (470)
Q Consensus       212 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~  291 (470)
                      +|++++|.+.+.  ..+..+++|+.|++++|.+....+  +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.
T Consensus       181 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~  254 (466)
T 1o6v_A          181 RLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQ  254 (466)
T ss_dssp             EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred             EEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCc
Confidence            999999887743  347888899999999888775544  56688888899888887763  456778888888888888


Q ss_pred             cccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccc
Q 046000          292 FSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTS  371 (470)
Q Consensus       292 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  371 (470)
                      +.+..+  +..+++|+.|++++|.+.+. +. +..+.. ++.|++++|.+.+..+  +..+++|+.|++++|.+.+.++ 
T Consensus       255 l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~-L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-  326 (466)
T 1o6v_A          255 ISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTA-LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-  326 (466)
T ss_dssp             CCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTT-CSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-
T ss_pred             cccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCc-cCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-
Confidence            875443  67788888888888887743 32 444444 7888888887764333  6677788888888887777655 


Q ss_pred             ccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc
Q 046000          372 SFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG  438 (470)
Q Consensus       372 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~  438 (470)
                      ...+++|++|++++|++.+.  ..+..+++|+.|++++|++.+..|  +..+++|++|++++|++++
T Consensus       327 ~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          327 VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            33677888888888877754  456677888888888888776555  6777888888888887764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1e-35  Score=283.53  Aligned_cols=376  Identities=23%  Similarity=0.245  Sum_probs=158.4

Q ss_pred             CcccccccCCCcCceeeccCCCCCCccc-----cccc-------------cccccccccCCCCchHhhhcCCCCcEEEcc
Q 046000            2 LFLGAGLHKLKNLEALDLSFNNINGTVE-----SQES-------------FELNLAKNNIGGHLLDCLNNMTRLKVLDTS   63 (470)
Q Consensus         2 ~~l~~~l~~~~~L~~L~ls~~~~~~~~~-----~~~L-------------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~   63 (470)
                      +.+|++++++++|++|++++|.+.+..+     +.+|             ++|++++|.+++. |.   -.++|++|+++
T Consensus        24 ~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p~---~~~~L~~L~l~   99 (454)
T 1jl5_A           24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-PE---LPPHLESLVAS   99 (454)
T ss_dssp             ----------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-CS---CCTTCSEEECC
T ss_pred             hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-CC---CcCCCCEEEcc
Confidence            5689999999999999999998864433     4444             5566666665532 22   12456666666


Q ss_pred             CCccccccchhhhcCcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccC
Q 046000           64 FNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSH  143 (470)
Q Consensus        64 ~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  143 (470)
                      +|.+++ +|+.   .++|++|++++|.+.+ ++.    ..++|++|++++|.+...        +.+..+++|++|++++
T Consensus       100 ~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~l--------p~~~~l~~L~~L~l~~  162 (454)
T 1jl5_A          100 CNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEKL--------PELQNSSFLKIIDVDN  162 (454)
T ss_dssp             SSCCSS-CCCC---CTTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSSC--------CCCTTCTTCCEEECCS
T ss_pred             CCcCCc-cccc---cCCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCCC--------cccCCCCCCCEEECCC
Confidence            666653 3322   2556666666665542 110    014555666655544311        1244555566666666


Q ss_pred             ccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCC
Q 046000          144 NNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGN  223 (470)
Q Consensus       144 ~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  223 (470)
                      |.+. .+|.    ..++|+.|++++|.+.+. + .+..+++|++|++++|.+. .+|..    .++|++|++++|.+. .
T Consensus       163 N~l~-~lp~----~~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~-~  229 (454)
T 1jl5_A          163 NSLK-KLPD----LPPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILE-E  229 (454)
T ss_dssp             SCCS-CCCC----CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS-S
T ss_pred             CcCc-ccCC----CcccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCC-c
Confidence            5555 3332    123555555555555542 1 3455555555555555554 23322    235555555555554 3


Q ss_pred             CchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCC
Q 046000          224 LPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKS  303 (470)
Q Consensus       224 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~  303 (470)
                      +| .+..+++|+.|++++|.+.... .   ..++|++|++++|.+.... .   ..++|+.+++++|.+.+...    ..
T Consensus       230 lp-~~~~l~~L~~L~l~~N~l~~l~-~---~~~~L~~L~l~~N~l~~l~-~---~~~~L~~L~ls~N~l~~l~~----~~  296 (454)
T 1jl5_A          230 LP-ELQNLPFLTTIYADNNLLKTLP-D---LPPSLEALNVRDNYLTDLP-E---LPQSLTFLDVSENIFSGLSE----LP  296 (454)
T ss_dssp             CC-CCTTCTTCCEEECCSSCCSSCC-S---CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSEESC----CC
T ss_pred             cc-ccCCCCCCCEEECCCCcCCccc-c---cccccCEEECCCCcccccC-c---ccCcCCEEECcCCccCcccC----cC
Confidence            33 2555555555555555544321 1   1245555555555544311 1   12445555555554442110    11


Q ss_pred             CCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEc
Q 046000          304 NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYV  383 (470)
Q Consensus       304 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l  383 (470)
                      ++|+.|++++|.+.+ ++.    .+                        ++|+.|++++|.+.+++..   +++|++|++
T Consensus       297 ~~L~~L~l~~N~l~~-i~~----~~------------------------~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L  344 (454)
T 1jl5_A          297 PNLYYLNASSNEIRS-LCD----LP------------------------PSLEELNVSNNKLIELPAL---PPRLERLIA  344 (454)
T ss_dssp             TTCCEEECCSSCCSE-ECC----CC------------------------TTCCEEECCSSCCSCCCCC---CTTCCEEEC
T ss_pred             CcCCEEECcCCcCCc-ccC----Cc------------------------CcCCEEECCCCcccccccc---CCcCCEEEC
Confidence            344555555554431 111    11                        2445555555544443322   344555555


Q ss_pred             cCCcccccCccchhcCCCccEEEcCCcccee--ecchhhhcC-------------CCCcEEEccCcccCc--ccchhhcc
Q 046000          384 QRNDLSGTIPNALFRSSKLMTLDLRDNGFSG--IISDQINES-------------SNLRVLLLRGNYLEG--PISNQFCQ  446 (470)
Q Consensus       384 ~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~--~~~~~~~~~-------------~~L~~L~l~~n~i~~--~~~~~~~~  446 (470)
                      ++|.++. +|.   .+++|+.|++++|++.+  .+|..++.+             ++|++|++++|++++  .+|     
T Consensus       345 ~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP-----  415 (454)
T 1jl5_A          345 SFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP-----  415 (454)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------------------
T ss_pred             CCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch-----
Confidence            5555442 222   23445555555555444  334444443             789999999998885  444     


Q ss_pred             CCCCCeEEccCcccccccCC
Q 046000          447 LRRLGVMDLSHNRINGSIPS  466 (470)
Q Consensus       447 l~~L~~l~l~~n~~~~~~p~  466 (470)
                       ++++.|.+.+|.+.+.+|.
T Consensus       416 -~sl~~L~~~~~~~~~~~~~  434 (454)
T 1jl5_A          416 -ESVEDLRMNSERVVDPYEF  434 (454)
T ss_dssp             --------------------
T ss_pred             -hhHhheeCcCcccCCcccc
Confidence             3456677888887766654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.2e-35  Score=283.35  Aligned_cols=360  Identities=19%  Similarity=0.165  Sum_probs=214.8

Q ss_pred             cccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccCccCcCccChhhhccccccceecccCCCCccc
Q 046000           40 KNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNML  119 (470)
Q Consensus        40 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  119 (470)
                      .+......+..++++++|++|++++|.+.+. | .+..+++|++|++++|.+.+. +   +..+++|++|++++|.+...
T Consensus        27 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~---~~~l~~L~~L~Ls~N~l~~~  100 (457)
T 3bz5_A           27 AFEMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D---LSQNTNLTYLACDSNKLTNL  100 (457)
T ss_dssp             HTTCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCSCC
T ss_pred             hcCcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c---cccCCCCCEEECcCCCCcee
Confidence            3333334444566666666666666666643 3 466666666666666666532 2   55666666666666655421


Q ss_pred             cccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCC
Q 046000          120 QLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKL  199 (470)
Q Consensus       120 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~  199 (470)
                               .+..+++|++|++++|.+. .++   +..+++|+.|++++|.+++.   ++..+++|++|++++|...+.+
T Consensus       101 ---------~~~~l~~L~~L~L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~  164 (457)
T 3bz5_A          101 ---------DVTPLTKLTYLNCDTNKLT-KLD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL  164 (457)
T ss_dssp             ---------CCTTCTTCCEEECCSSCCS-CCC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC
T ss_pred             ---------ecCCCCcCCEEECCCCcCC-eec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc
Confidence                     1445566677777776666 343   44666677777776666642   3556666777777766444343


Q ss_pred             CcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCc
Q 046000          200 PQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNL  279 (470)
Q Consensus       200 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  279 (470)
                      +   +..+++|++|++++|.+.+ ++  +..+++|+.|++++|.+...   .+..+++|++|++++|++....   +..+
T Consensus       165 ~---~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l  232 (457)
T 3bz5_A          165 D---VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPL  232 (457)
T ss_dssp             C---CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTC
T ss_pred             c---cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---cccc
Confidence            2   2235667777777776664 33  56667777777777766643   2556677777777777666521   5566


Q ss_pred             ccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEE
Q 046000          280 TRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLS  359 (470)
Q Consensus       280 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~  359 (470)
                      ++|+.+++++|.+.+..   +..+++|+.++++++.               ++.+++++|...+.+|  +..+++|+.|+
T Consensus       233 ~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~---------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~  292 (457)
T 3bz5_A          233 TQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD---------------LLEIDLTHNTQLIYFQ--AEGCRKIKELD  292 (457)
T ss_dssp             TTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC---------------CSCCCCTTCTTCCEEE--CTTCTTCCCCC
T ss_pred             CCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC---------------CCEEECCCCccCCccc--ccccccCCEEE
Confidence            77777777777666443   2345556665555442               3344445554433333  23445555555


Q ss_pred             ccCccccCcccc---------ccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEE
Q 046000          360 VSENCLSGFMTS---------SFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLL  430 (470)
Q Consensus       360 l~~~~l~~~~~~---------~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  430 (470)
                      +++|......+.         ...+++|++|++++|++++.   .+..+++|+.|++++|++.+        ++.|+.|+
T Consensus       293 Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~  361 (457)
T 3bz5_A          293 VTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIP  361 (457)
T ss_dssp             CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSS
T ss_pred             CCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------cccccccc
Confidence            555532111110         01346777788888877753   26677778888888887764        24555666


Q ss_pred             ccCcccCcccchhhccCCCCCeEEccCcccccccCCCcc
Q 046000          431 LRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFT  469 (470)
Q Consensus       431 l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~  469 (470)
                      +++|.+.+.     ..+..|..+++++|++++.+|..+.
T Consensus       362 l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          362 ALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             GGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred             ccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence            777777643     3455677888899999988888764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.2e-35  Score=282.84  Aligned_cols=329  Identities=19%  Similarity=0.154  Sum_probs=271.9

Q ss_pred             CcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCcee
Q 046000          134 HDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYI  213 (470)
Q Consensus       134 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  213 (470)
                      +++++|++++|.++ .++...+..+++|++|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++|
T Consensus        32 ~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  109 (477)
T 2id5_A           32 TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL  109 (477)
T ss_dssp             TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEE
T ss_pred             CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEE
Confidence            46888999999888 555556678899999999999888777788889999999999999888 6676666668999999


Q ss_pred             eccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccc
Q 046000          214 DMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFS  293 (470)
Q Consensus       214 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  293 (470)
                      ++++|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++|.+.
T Consensus       110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred             ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence            99999998777888999999999999999998888888999999999999999998877778899999999999999998


Q ss_pred             cccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc
Q 046000          294 GKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF  373 (470)
Q Consensus       294 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  373 (470)
                      +..+..+..+++|+.|++++|...+.++........ ++.|++++|.++...+..+..+++|+.|++++|.+..++...+
T Consensus       190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  268 (477)
T 2id5_A          190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML  268 (477)
T ss_dssp             EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC-CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC
T ss_pred             EeChhhcccCcccceeeCCCCccccccCcccccCcc-ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc
Confidence            777778889999999999998877777776665554 9999999999885555678889999999999999988877666


Q ss_pred             -ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCe
Q 046000          374 -SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGV  452 (470)
Q Consensus       374 -~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~  452 (470)
                       .+++|++|++++|++.+..+..+..+++|+.|++++|+++...+..+..+++|++|++++|++...- ....-....+.
T Consensus       269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c-~~~~~~~~~~~  347 (477)
T 2id5_A          269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC-RLLWVFRRRWR  347 (477)
T ss_dssp             TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG-GGHHHHTTTTS
T ss_pred             cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc-chHhHHhhhhc
Confidence             7899999999999999888888999999999999999998777777888999999999999987422 11111233344


Q ss_pred             EEccCcccccccCC
Q 046000          453 MDLSHNRINGSIPS  466 (470)
Q Consensus       453 l~l~~n~~~~~~p~  466 (470)
                      +.+.++..+..-|.
T Consensus       348 ~~~~~~~~~C~~p~  361 (477)
T 2id5_A          348 LNFNRQQPTCATPE  361 (477)
T ss_dssp             SCCTTCCCBEEESG
T ss_pred             cccCccCceeCCch
Confidence            44555544444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.3e-35  Score=281.84  Aligned_cols=324  Identities=19%  Similarity=0.134  Sum_probs=285.5

Q ss_pred             ccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeec
Q 046000          136 LKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDM  215 (470)
Q Consensus       136 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  215 (470)
                      -+.++.++..++ .+|..+   .++++.|++++|.+....+..+..+++|++|++++|.+.+..|. .+..+++|++|++
T Consensus        13 ~~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L   87 (477)
T 2id5_A           13 DRAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG-AFNNLFNLRTLGL   87 (477)
T ss_dssp             TTEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEC
T ss_pred             CCEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh-hhhCCccCCEEEC
Confidence            356778888777 777643   46899999999999988888899999999999999999854444 4455899999999


Q ss_pred             cCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccc
Q 046000          216 ANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGK  295 (470)
Q Consensus       216 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~  295 (470)
                      ++|.+....+..|..+++|+.|++++|.+....+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+.
T Consensus        88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  167 (477)
T 2id5_A           88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI  167 (477)
T ss_dssp             CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred             CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence            99999876666789999999999999999988888999999999999999999887778899999999999999999987


Q ss_pred             cchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-c
Q 046000          296 IEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-S  374 (470)
Q Consensus       296 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~  374 (470)
                      .+..+..+++|+.|++++|.+.+..+..+..+.. ++.|++++|...+.++.......+|+.|++++|.++.++...+ .
T Consensus       168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  246 (477)
T 2id5_A          168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR-LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH  246 (477)
T ss_dssp             CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTT-CCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT
T ss_pred             ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcc-cceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC
Confidence            7788999999999999999998655556666655 9999999998777777776667799999999999998886555 7


Q ss_pred             cCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEE
Q 046000          375 LSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMD  454 (470)
Q Consensus       375 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~  454 (470)
                      +++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|++++..+..+..+++|+.|+
T Consensus       247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  326 (477)
T 2id5_A          247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI  326 (477)
T ss_dssp             CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEE
T ss_pred             ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEE
Confidence            89999999999999988888899999999999999999988899999999999999999999988888899999999999


Q ss_pred             ccCcccccccC
Q 046000          455 LSHNRINGSIP  465 (470)
Q Consensus       455 l~~n~~~~~~p  465 (470)
                      +++|+++...+
T Consensus       327 l~~N~l~c~c~  337 (477)
T 2id5_A          327 LDSNPLACDCR  337 (477)
T ss_dssp             CCSSCEECSGG
T ss_pred             ccCCCccCccc
Confidence            99999986543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.1e-32  Score=255.34  Aligned_cols=304  Identities=22%  Similarity=0.263  Sum_probs=201.7

Q ss_pred             cCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCce
Q 046000          133 KHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLY  212 (470)
Q Consensus       133 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  212 (470)
                      +++|++|+++++.+. .++.  +..+++|++|++++|.+.+...  +..+++|++|++++|.+. .++  .+..+++|++
T Consensus        43 l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~--~~~~l~~L~~  114 (347)
T 4fmz_A           43 LESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS--ALQNLTNLRE  114 (347)
T ss_dssp             HTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG--GGTTCTTCSE
T ss_pred             cccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch--HHcCCCcCCE
Confidence            344555555555544 3332  3345555555555555543222  445555555555555554 222  1333556666


Q ss_pred             eeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcccccc
Q 046000          213 IDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKF  292 (470)
Q Consensus       213 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  292 (470)
                      |++++|.+.+. +. +..+++|+.|++++|...... ..+..+++|++|++++|.+.....  +..+++|+.+++++|.+
T Consensus       115 L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l  189 (347)
T 4fmz_A          115 LYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI  189 (347)
T ss_dssp             EECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC
T ss_pred             EECcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc
Confidence            66666665532 22 556666666666666433222 225566667777776666654332  55667777777777766


Q ss_pred             ccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccc
Q 046000          293 SGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSS  372 (470)
Q Consensus       293 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  372 (470)
                      .+...  +..+++|+.+++++|.+.+..+  +..+.. ++.|++++|.+++..+  +..+++|++|++++|.+.+++ ..
T Consensus       190 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~-L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~~  261 (347)
T 4fmz_A          190 EDISP--LASLTSLHYFTAYVNQITDITP--VANMTR-LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN-AV  261 (347)
T ss_dssp             CCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTT-CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GG
T ss_pred             ccccc--ccCCCccceeecccCCCCCCch--hhcCCc-CCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh-hH
Confidence            64332  6667777777777777763322  333443 7788888887764333  778899999999999988763 23


Q ss_pred             cccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCe
Q 046000          373 FSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGV  452 (470)
Q Consensus       373 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~  452 (470)
                      ..+++|++|++++|++.+.  ..+..+++|+.|++++|++.+..+..+..+++|++|++++|++++..|  +..++.|+.
T Consensus       262 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  337 (347)
T 4fmz_A          262 KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS  337 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred             hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence            3789999999999999854  457889999999999999988888889999999999999999997666  888999999


Q ss_pred             EEccCcccc
Q 046000          453 MDLSHNRIN  461 (470)
Q Consensus       453 l~l~~n~~~  461 (470)
                      |++++|+|+
T Consensus       338 L~l~~N~i~  346 (347)
T 4fmz_A          338 ADFANQVIK  346 (347)
T ss_dssp             ESSSCC---
T ss_pred             eehhhhccc
Confidence            999999987

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.6e-33  Score=268.67  Aligned_cols=348  Identities=19%  Similarity=0.197  Sum_probs=198.9

Q ss_pred             ccccCCCcCceeeccCCCCCCccc---cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCc
Q 046000            6 AGLHKLKNLEALDLSFNNINGTVE---SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVE   82 (470)
Q Consensus         6 ~~l~~~~~L~~L~ls~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~   82 (470)
                      ..++++++|++|++++|.+.+.+.   +++|++|++++|.+++. +  ++.+++|++|++++|.+.+. +  ++.+++|+
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~  109 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLT  109 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred             cChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence            356677888888888887765433   66777777777777753 3  67777777777777777643 3  66777777


Q ss_pred             EEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCc
Q 046000           83 YLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLE  162 (470)
Q Consensus        83 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~  162 (470)
                      +|++++|.+.+ .+   +..+++|++|++++|.+...         .+..+++|++|++++|...+.++   +..+++|+
T Consensus       110 ~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l---------~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~  173 (457)
T 3bz5_A          110 YLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI---------DVSHNTQLTELDCHLNKKITKLD---VTPQTQLT  173 (457)
T ss_dssp             EEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC---------CCTTCTTCCEEECTTCSCCCCCC---CTTCTTCC
T ss_pred             EEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee---------ccccCCcCCEEECCCCCcccccc---cccCCcCC
Confidence            77777777764 23   66677777777777765532         14455667777777774443442   34567777


Q ss_pred             EEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEcccc
Q 046000          163 VLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKN  242 (470)
Q Consensus       163 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  242 (470)
                      .|++++|.+++.   ++..+++|+.|++++|.+.+ ++   +..+++|++|++++|.+.+ +|  +..+++|+.|++++|
T Consensus       174 ~L~ls~n~l~~l---~l~~l~~L~~L~l~~N~l~~-~~---l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          174 TLDCSFNKITEL---DVSQNKLLNRLNCDTNNITK-LD---LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVN  243 (457)
T ss_dssp             EEECCSSCCCCC---CCTTCTTCCEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSS
T ss_pred             EEECCCCcccee---ccccCCCCCEEECcCCcCCe-ec---cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCC
Confidence            777777776642   25666777777777777663 22   2336677777777777764 33  666777777777777


Q ss_pred             ccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcch
Q 046000          243 NFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPH  322 (470)
Q Consensus       243 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  322 (470)
                      .+....   +..+++|+.|+++.+.              |+.+++++|...+..+  +..+++|+.|++++|...+.+|.
T Consensus       244 ~l~~~~---~~~l~~L~~L~l~~n~--------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~  304 (457)
T 3bz5_A          244 PLTELD---VSTLSKLTTLHCIQTD--------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC  304 (457)
T ss_dssp             CCSCCC---CTTCTTCCEEECTTCC--------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred             cCCCcC---HHHCCCCCEEeccCCC--------------CCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc
Confidence            766543   2344555555554432              3334444444333322  23455666666666654444432


Q ss_pred             hHHhh-------hccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccc
Q 046000          323 WIANF-------SSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNA  395 (470)
Q Consensus       323 ~~~~~-------~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  395 (470)
                      ....+       .+.++.|++++|.+++ ++  +..+++|+.|++++|++.+       ++.|..|.+.+|.+.+.    
T Consensus       305 ~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~-------l~~L~~L~l~~n~l~g~----  370 (457)
T 3bz5_A          305 QAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD-------FSSVGKIPALNNNFEAE----  370 (457)
T ss_dssp             TTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB-------CTTGGGSSGGGTSEEEE----
T ss_pred             CCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC-------ccccccccccCCcEEec----
Confidence            11000       0114444444444443 11  3444444444444444443       12333344444444322    


Q ss_pred             hhcCCCccEEEcCCccceeecchh
Q 046000          396 LFRSSKLMTLDLRDNGFSGIISDQ  419 (470)
Q Consensus       396 l~~~~~L~~L~l~~n~l~~~~~~~  419 (470)
                       ..+..|..+++++|.+++.+|..
T Consensus       371 -~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          371 -GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             -EEEEECCCBCCBTTBEEEECCTT
T ss_pred             -ceeeecCccccccCcEEEEcChh
Confidence             12344555666666666655543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.2e-32  Score=259.10  Aligned_cols=309  Identities=21%  Similarity=0.206  Sum_probs=216.8

Q ss_pred             cCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCce
Q 046000          133 KHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLY  212 (470)
Q Consensus       133 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  212 (470)
                      +++++.++++++.+. .+|..++..+++|++|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence            356777777777776 677777777777888888877777666667777777888888877777 444444445777888


Q ss_pred             eeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcccccc
Q 046000          213 IDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKF  292 (470)
Q Consensus       213 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  292 (470)
                      |++++|.+....+..|..+++|+.|++++|.+....+..+..+++|++|++++|.+...   .+..+++|+.+++++|.+
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence            88888777744444467777888888888777766666777777888888887777654   244567777777777766


Q ss_pred             ccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccc
Q 046000          293 SGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSS  372 (470)
Q Consensus       293 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  372 (470)
                      .+.     ...+++++|++++|.+. .++..   ....++.|++++|.+++.  ..+..+++|+.|++++|.+.+..+..
T Consensus       199 ~~~-----~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~  267 (390)
T 3o6n_A          199 STL-----AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP  267 (390)
T ss_dssp             SEE-----ECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             ccc-----CCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence            532     23457778888887776 33322   123477888888877642  45677778888888888777765554


Q ss_pred             c-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCC
Q 046000          373 F-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLG  451 (470)
Q Consensus       373 ~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~  451 (470)
                      + .+++|++|++++|++.+ .+..+..+++|+.|++++|++. .++..+..+++|++|++++|+++.. +  +..++.|+
T Consensus       268 ~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~  342 (390)
T 3o6n_A          268 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLK  342 (390)
T ss_dssp             GTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCS
T ss_pred             ccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCC
Confidence            4 67788888888887774 3444566778888888888777 4555577778888888888887743 2  66677788


Q ss_pred             eEEccCccccc
Q 046000          452 VMDLSHNRING  462 (470)
Q Consensus       452 ~l~l~~n~~~~  462 (470)
                      .|++++|+++.
T Consensus       343 ~L~l~~N~~~~  353 (390)
T 3o6n_A          343 NLTLSHNDWDC  353 (390)
T ss_dssp             EEECCSSCEEH
T ss_pred             EEEcCCCCccc
Confidence            88888887764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.7e-31  Score=247.39  Aligned_cols=307  Identities=20%  Similarity=0.268  Sum_probs=188.1

Q ss_pred             hhcCcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHh
Q 046000           75 IVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWI  154 (470)
Q Consensus        75 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~  154 (470)
                      +..+++|++|+++++.+. ..+  .+..+++|++|++++|.+....        .+..+++|++|++++|.+. .++.  
T Consensus        40 ~~~l~~L~~L~l~~~~i~-~~~--~~~~~~~L~~L~l~~n~i~~~~--------~~~~l~~L~~L~L~~n~i~-~~~~--  105 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVA-SIQ--GIEYLTNLEYLNLNGNQITDIS--------PLSNLVKLTNLYIGTNKIT-DISA--  105 (347)
T ss_dssp             HHHHTTCSEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCCCG--------GGTTCTTCCEEECCSSCCC-CCGG--
T ss_pred             chhcccccEEEEeCCccc-cch--hhhhcCCccEEEccCCccccch--------hhhcCCcCCEEEccCCccc-CchH--
Confidence            345666667777666665 222  2555555555555555443111        1344455555555555554 2322  


Q ss_pred             hhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCc
Q 046000          155 LQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTL  234 (470)
Q Consensus       155 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L  234 (470)
                      +..+++|++|++++|.+.....  +..                         +++|++|++++|..... ...+..+++|
T Consensus       106 ~~~l~~L~~L~l~~n~i~~~~~--~~~-------------------------l~~L~~L~l~~n~~~~~-~~~~~~l~~L  157 (347)
T 4fmz_A          106 LQNLTNLRELYLNEDNISDISP--LAN-------------------------LTKMYSLNLGANHNLSD-LSPLSNMTGL  157 (347)
T ss_dssp             GTTCTTCSEEECTTSCCCCCGG--GTT-------------------------CTTCCEEECTTCTTCCC-CGGGTTCTTC
T ss_pred             HcCCCcCCEEECcCCcccCchh--hcc-------------------------CCceeEEECCCCCCccc-ccchhhCCCC
Confidence            3344455555555444443221  334                         44555555555533322 2225555555


Q ss_pred             cEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCC
Q 046000          235 TFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNN  314 (470)
Q Consensus       235 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  314 (470)
                      +.|++++|.+....+  +..+++|++|++++|.+.+...  +..+++|+.+++++|.+.+..+  +..+++|++|++++|
T Consensus       158 ~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n  231 (347)
T 4fmz_A          158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN  231 (347)
T ss_dssp             CEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred             cEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCC
Confidence            566655555543322  4555666666666665554322  5556666666666666653332  556667777777777


Q ss_pred             cccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCcc
Q 046000          315 MLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPN  394 (470)
Q Consensus       315 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  394 (470)
                      .+.+ .+. +..+.. ++.|++++|.+++ + ..+..+++|+.|++++|.+.+++. ...+++|++|++++|++.+..+.
T Consensus       232 ~l~~-~~~-~~~l~~-L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~  305 (347)
T 4fmz_A          232 KITD-LSP-LANLSQ-LTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNEDME  305 (347)
T ss_dssp             CCCC-CGG-GTTCTT-CCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCGGGHH
T ss_pred             ccCC-Ccc-hhcCCC-CCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCChh-hcCCCCCCEEECcCCcCCCcChh
Confidence            6653 322 333333 7777777777653 2 456778999999999999988742 34789999999999999988888


Q ss_pred             chhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccC
Q 046000          395 ALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLE  437 (470)
Q Consensus       395 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~  437 (470)
                      .+..+++|+.|++++|++++..+  +..+++|++|++++|+|+
T Consensus       306 ~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            89999999999999999987655  888999999999999986

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=6.1e-32  Score=254.29  Aligned_cols=264  Identities=21%  Similarity=0.206  Sum_probs=171.3

Q ss_pred             cccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccC
Q 046000          131 QLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKL  210 (470)
Q Consensus       131 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  210 (470)
                      ..+++|++|++++|.+. .+++..+..+++|+.|++++|.+.......+..+++|++|++++|.+               
T Consensus        90 ~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l---------------  153 (390)
T 3o6n_A           90 AYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL---------------  153 (390)
T ss_dssp             TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC---------------
T ss_pred             cCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCcc---------------
Confidence            33445566666666555 34433444555566666665555533333344445555555555544               


Q ss_pred             ceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcccc
Q 046000          211 LYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNN  290 (470)
Q Consensus       211 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~  290 (470)
                                .+..+..+..+++|+.|++++|.+....   +..+++|+.+++++|.+..     +...++|+.+++++|
T Consensus       154 ----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n  215 (390)
T 3o6n_A          154 ----------ERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHN  215 (390)
T ss_dssp             ----------CBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSS
T ss_pred             ----------CccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccc-----cCCCCcceEEECCCC
Confidence                      4333444455555555555555544321   3334555555555554432     123345666666666


Q ss_pred             ccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccc
Q 046000          291 KFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMT  370 (470)
Q Consensus       291 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  370 (470)
                      .+.....   ...++|+.|++++|.+.+.  ..+..++. ++.|++++|.+.+..+..+..+++|+.|++++|.+..++.
T Consensus       216 ~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  289 (390)
T 3o6n_A          216 SINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPG-LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL  289 (390)
T ss_dssp             CCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTT-CSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEEC
T ss_pred             eeeeccc---cccccccEEECCCCCCccc--HHHcCCCC-ccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCc
Confidence            6653322   2246778888888877632  34455554 8888888888877778888889999999999999988776


Q ss_pred             cccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc
Q 046000          371 SSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG  438 (470)
Q Consensus       371 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~  438 (470)
                      ....+++|++|++++|++. .++..+..+++|+.|++++|++... +  +..+++|++|++++|++..
T Consensus       290 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          290 YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             SSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred             ccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence            6667899999999999998 5566678889999999999998854 2  6778999999999999875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=4.3e-32  Score=268.89  Aligned_cols=310  Identities=21%  Similarity=0.209  Sum_probs=243.4

Q ss_pred             cCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCce
Q 046000          133 KHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLY  212 (470)
Q Consensus       133 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  212 (470)
                      +.+++.++++++.+. .+|..++..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|++
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence            356888888888887 788877888888899998888888777778888888899999888887 455555555888899


Q ss_pred             eeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcccccc
Q 046000          213 IDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKF  292 (470)
Q Consensus       213 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  292 (470)
                      |++++|.+....+..|..+++|+.|++++|.+....+..+..+++|++|++++|.+...   .+..+++|+.+++++|.+
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence            99988888865555678888899999988888877777888888899999988888764   245678888888888877


Q ss_pred             ccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccc
Q 046000          293 SGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSS  372 (470)
Q Consensus       293 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  372 (470)
                      .+.     ...++|+.|++++|.+. .++...   +..++.|++++|.+++  +..+..+++|+.|++++|.+.+.++..
T Consensus       205 ~~l-----~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~  273 (597)
T 3oja_B          205 STL-----AIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP  273 (597)
T ss_dssp             SEE-----ECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             ccc-----cCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHH
Confidence            632     34567888999888876 333221   2348888998888874  366778889999999999888776655


Q ss_pred             c-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCC
Q 046000          373 F-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLG  451 (470)
Q Consensus       373 ~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~  451 (470)
                      + .+++|++|++++|.+.+ ++..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++.+. +  +..++.|+
T Consensus       274 ~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~  348 (597)
T 3oja_B          274 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLK  348 (597)
T ss_dssp             GTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCS
T ss_pred             hcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCC
Confidence            5 78889999999998885 4555667888999999999888 4666778888999999999988753 2  66778889


Q ss_pred             eEEccCcccccc
Q 046000          452 VMDLSHNRINGS  463 (470)
Q Consensus       452 ~l~l~~n~~~~~  463 (470)
                      .|++++|++++.
T Consensus       349 ~L~l~~N~~~~~  360 (597)
T 3oja_B          349 NLTLSHNDWDCN  360 (597)
T ss_dssp             EEECCSSCEEHH
T ss_pred             EEEeeCCCCCCh
Confidence            999999888754

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=4.7e-35  Score=282.31  Aligned_cols=382  Identities=18%  Similarity=0.129  Sum_probs=195.8

Q ss_pred             ccccccccccccCCCCchHh-hhcCCCCcEEEccCCcccc----ccchhhhcCcCCcEEeccCccCcCccChhhhcccc-
Q 046000           31 QESFELNLAKNNIGGHLLDC-LNNMTRLKVLDTSFNQLSG----SLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHS-  104 (470)
Q Consensus        31 ~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~i~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~-  104 (470)
                      +.+++|+++++.++...... +..+++|++|++++|.+.+    .+++.+..+++|++|++++|.+.+..+......++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            34555555555555433333 6677777777777777663    23555666777777777777765433322333344 


Q ss_pred             ---ccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhh----cCCCCcEEEccccccCCcc--
Q 046000          105 ---KLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQ----NNTKLEVLCLTNNSFTGNL--  175 (470)
Q Consensus       105 ---~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~----~~~~L~~L~l~~~~i~~~~--  175 (470)
                         +|++|++++|.+.....  ..+...+..+++|++|++++|.+.+..+..+..    ..++|++|++++|.++...  
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~--~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  160 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGC--GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  160 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGH--HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             CCCceeEEEccCCCCCHHHH--HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence               56666666665442110  112234455566777777777665332322221    2345666666666554321  


Q ss_pred             --CCCCCCCCcccEEeccCCcccCCCCcchhhh----hccCceeeccCCccCCC----CchhhcCCCCccEEEccccccc
Q 046000          176 --QLPHSKHDFLHHLDVSSNNFTGKLPQDKGII----LQKLLYIDMANNRFEGN----LPSSIGDMKTLTFLHLSKNNFS  245 (470)
Q Consensus       176 --~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~  245 (470)
                        ...+..+++|++|++++|.+.+..+..+...    .++|++|++++|.+.+.    ++..+..++             
T Consensus       161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-------------  227 (461)
T 1z7x_W          161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA-------------  227 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCT-------------
T ss_pred             HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCC-------------
Confidence              1222234455555555554432211111111    12455555555544421    233334444             


Q ss_pred             cccCccccCCCcccEEecCCCcCCCcchhh-----hcCcccccEEEccccccccc----cchhhcCCCCccEEECCCCcc
Q 046000          246 GELSTLFTGCVSLWFLDRSHNNFHDQIFPK-----YMNLTRLWFLYLDNNKFSGK----IEDGLLKSNQLKELDMSNNML  316 (470)
Q Consensus       246 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~  316 (470)
                                 +|++|++++|.+.+.....     +..+++|+.|++++|.+++.    .+..+..+++|++|++++|.+
T Consensus       228 -----------~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  296 (461)
T 1z7x_W          228 -----------SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL  296 (461)
T ss_dssp             -----------TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred             -----------CccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence                       4444444444443322111     11345555666655555432    233445566777777777766


Q ss_pred             cCCcchhHHhhh----ccccEEEcCCCcccCC----CchhhhccCCCeEEEccCccccCcccccc------ccCcccEEE
Q 046000          317 SGHIPHWIANFS----SYLEVLLMSKNFLKGN----IPMQLLNHGSLQLLSVSENCLSGFMTSSF------SLSSLVHLY  382 (470)
Q Consensus       317 ~~~~~~~~~~~~----~~l~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~------~~~~L~~L~  382 (470)
                      .+..+..+....    +.++.|++++|.+++.    ++..+..+++|+.|++++|.+.+.+...+      ..++|++|+
T Consensus       297 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~  376 (461)
T 1z7x_W          297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW  376 (461)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             chHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEE
Confidence            543333333321    2356666666655433    34445556777777777776655433322      145677777


Q ss_pred             ccCCcccc----cCccchhcCCCccEEEcCCccceeecchhhh-----cCCCCcEEEccCcccCc
Q 046000          383 VQRNDLSG----TIPNALFRSSKLMTLDLRDNGFSGIISDQIN-----ESSNLRVLLLRGNYLEG  438 (470)
Q Consensus       383 l~~~~l~~----~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~i~~  438 (470)
                      +++|++++    .++..+..+++|+.|++++|++.+.....+.     ...+|+.|++.++.+..
T Consensus       377 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  441 (461)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             CCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence            77776664    4455566667777777777766543222111     12356666666665543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=7.6e-35  Score=280.82  Aligned_cols=380  Identities=20%  Similarity=0.112  Sum_probs=258.3

Q ss_pred             CCCcEEEccCCccccccch-hhhcCcCCcEEeccCccCcCccC---hhhhccccccceecccCCCCccccccccCCCCcc
Q 046000           55 TRLKVLDTSFNQLSGSLPS-VIVNLASVEYLDLSNSYFEGTFP---ISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTF  130 (470)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  130 (470)
                      ++|++|+++++.+.+.... .+..+++|++|++++|.+.+...   ...+..+++                         
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~-------------------------   57 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPA-------------------------   57 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTT-------------------------
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCC-------------------------
Confidence            4678888888877644333 36777888888888887653211   123334444                         


Q ss_pred             cccCcccEEEccCccccCccchHhhhcCC----CCcEEEccccccCC----ccCCCCCCCCcccEEeccCCcccCCCCcc
Q 046000          131 QLKHDLKYLDLSHNNLAGDFPAWILQNNT----KLEVLCLTNNSFTG----NLQLPHSKHDFLHHLDVSSNNFTGKLPQD  202 (470)
Q Consensus       131 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~----~L~~L~l~~~~i~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  202 (470)
                           |++|++++|.+.+..+..+...++    +|++|++++|.+..    ..+..+..+++|++|++++|.+.+..+..
T Consensus        58 -----L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~  132 (461)
T 1z7x_W           58 -----LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL  132 (461)
T ss_dssp             -----CCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH
T ss_pred             -----cCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH
Confidence                 455555555444323333333333    46666666665553    22344556667777777777665332222


Q ss_pred             hhhh----hccCceeeccCCccCCC----CchhhcCCCCccEEEccccccccccCcccc-----CCCcccEEecCCCcCC
Q 046000          203 KGII----LQKLLYIDMANNRFEGN----LPSSIGDMKTLTFLHLSKNNFSGELSTLFT-----GCVSLWFLDRSHNNFH  269 (470)
Q Consensus       203 ~~~~----~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~  269 (470)
                      +...    .++|++|++++|.+.+.    ++..+..+++|+.|++++|.+.......+.     ..++|++|++++|.+.
T Consensus       133 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  212 (461)
T 1z7x_W          133 LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT  212 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred             HHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence            2222    34688888888877643    245567788999999999987755443332     3569999999999988


Q ss_pred             Ccc----hhhhcCcccccEEEccccccccccc-----hhhcCCCCccEEECCCCcccCC----cchhHHhhhccccEEEc
Q 046000          270 DQI----FPKYMNLTRLWFLYLDNNKFSGKIE-----DGLLKSNQLKELDMSNNMLSGH----IPHWIANFSSYLEVLLM  336 (470)
Q Consensus       270 ~~~----~~~~~~~~~L~~l~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~l~~L~l  336 (470)
                      +..    +..+..+++|+.|++++|.+.+...     .....+++|+.|++++|.+.+.    ++..+..... ++.|++
T Consensus       213 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L~~L~L  291 (461)
T 1z7x_W          213 SDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES-LKELSL  291 (461)
T ss_dssp             TTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTT-CCEEEC
T ss_pred             HHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCC-cceEEC
Confidence            753    4556678999999999998875432     2233588999999999998744    4555555555 999999


Q ss_pred             CCCcccCCCchhhhc-----cCCCeEEEccCccccCcccccc-----ccCcccEEEccCCcccccCccchhc-----CCC
Q 046000          337 SKNFLKGNIPMQLLN-----HGSLQLLSVSENCLSGFMTSSF-----SLSSLVHLYVQRNDLSGTIPNALFR-----SSK  401 (470)
Q Consensus       337 ~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~l~~~~~~~~-----~~~~L~~L~l~~~~l~~~~~~~l~~-----~~~  401 (470)
                      ++|.+.+..+..+..     .++|+.|++++|.+++.....+     .+++|++|++++|.+.+..+..+..     .++
T Consensus       292 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~  371 (461)
T 1z7x_W          292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV  371 (461)
T ss_dssp             TTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred             CCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCc
Confidence            999887544444432     3699999999999887643222     5799999999999998665554432     679


Q ss_pred             ccEEEcCCcccee----ecchhhhcCCCCcEEEccCcccCcccchhhc-----cCCCCCeEEccCcccccccC
Q 046000          402 LMTLDLRDNGFSG----IISDQINESSNLRVLLLRGNYLEGPISNQFC-----QLRRLGVMDLSHNRINGSIP  465 (470)
Q Consensus       402 L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-----~l~~L~~l~l~~n~~~~~~p  465 (470)
                      |+.|++++|++++    .++..+..+++|++|++++|++++.....+.     ....|+.|.+.++.+....+
T Consensus       372 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~  444 (461)
T 1z7x_W          372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME  444 (461)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred             eEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHH
Confidence            9999999999986    6778888999999999999999864333332     23468889888887765443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.8e-30  Score=257.19  Aligned_cols=264  Identities=20%  Similarity=0.203  Sum_probs=167.4

Q ss_pred             cccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccC
Q 046000          131 QLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKL  210 (470)
Q Consensus       131 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  210 (470)
                      ..+++|++|++++|.+. .+++..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.              
T Consensus        96 ~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~--------------  160 (597)
T 3oja_B           96 AYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE--------------  160 (597)
T ss_dssp             TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--------------
T ss_pred             cCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC--------------
Confidence            34455666666666665 344444455666666666666655444334455555555555555554              


Q ss_pred             ceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcccc
Q 046000          211 LYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNN  290 (470)
Q Consensus       211 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~  290 (470)
                                 +..+..|..+++|+.|++++|.+....   +..+++|+.|++++|.+..     +...++|+.+++++|
T Consensus       161 -----------~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n  221 (597)
T 3oja_B          161 -----------RIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHN  221 (597)
T ss_dssp             -----------BCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSS
T ss_pred             -----------CCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCC
Confidence                       333334444444444444444443321   2334455555555554432     123345566666666


Q ss_pred             ccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccc
Q 046000          291 KFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMT  370 (470)
Q Consensus       291 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  370 (470)
                      .+......   ..++|+.|++++|.+.+  +.++..++. ++.|++++|.+.+..|..+..+++|+.|++++|.+..++.
T Consensus       222 ~l~~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~  295 (597)
T 3oja_B          222 SINVVRGP---VNVELTILKLQHNNLTD--TAWLLNYPG-LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL  295 (597)
T ss_dssp             CCCEEECS---CCSCCCEEECCSSCCCC--CGGGGGCTT-CSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEEC
T ss_pred             cccccccc---cCCCCCEEECCCCCCCC--ChhhccCCC-CCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCc
Confidence            55532221   13567777777777763  244555554 7788888888777777888888899999999998888776


Q ss_pred             cccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc
Q 046000          371 SSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG  438 (470)
Q Consensus       371 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~  438 (470)
                      ....+++|++|++++|.+. .+|..+..+++|+.|++++|++... +  +..+++|+.|++++|++.+
T Consensus       296 ~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          296 YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             SSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred             ccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCC
Confidence            6667889999999999988 5667778889999999999998754 2  5678899999999998875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=2.9e-31  Score=241.13  Aligned_cols=249  Identities=25%  Similarity=0.376  Sum_probs=161.1

Q ss_pred             cccEEeccCCcccC--CCCcchhhhhccCceeeccC-CccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccE
Q 046000          184 FLHHLDVSSNNFTG--KLPQDKGIILQKLLYIDMAN-NRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWF  260 (470)
Q Consensus       184 ~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  260 (470)
                      ++++|+++++.+.+  .+|..+.. +++|++|++++ |.+.+..|..|..+++|+.|++++|.+....+           
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~-l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-----------  118 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-----------  118 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-----------
T ss_pred             eEEEEECCCCCccCCcccChhHhC-CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC-----------
Confidence            45555555555554  34433322 45555555552 44444444445555555555555555444444           


Q ss_pred             EecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCc
Q 046000          261 LDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNF  340 (470)
Q Consensus       261 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~  340 (470)
                                   ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|..+..+.+.++.|++++|.
T Consensus       119 -------------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          119 -------------DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             -------------GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             -------------HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence                         4444455555555555555544555555666666666666666655666665555346666666666


Q ss_pred             ccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchh
Q 046000          341 LKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQ  419 (470)
Q Consensus       341 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~  419 (470)
                      +.+..|..+..++ |+.|++++|.+....+..+ .+++|++|++++|.+.+..+. +..+++|+.|++++|++.+.+|..
T Consensus       186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~  263 (313)
T 1ogq_A          186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG  263 (313)
T ss_dssp             EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGG
T ss_pred             eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChH
Confidence            6666666666665 7777777777765555444 677888888888888755444 667788888888888888788888


Q ss_pred             hhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCccc
Q 046000          420 INESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRI  460 (470)
Q Consensus       420 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~  460 (470)
                      +..+++|++|++++|++++.+|.. ..+++|+.+++++|+.
T Consensus       264 l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~  303 (313)
T 1ogq_A          264 LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC  303 (313)
T ss_dssp             GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred             HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCC
Confidence            888888888888888888777776 7788888888888873

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.6e-29  Score=232.07  Aligned_cols=267  Identities=18%  Similarity=0.187  Sum_probs=188.0

Q ss_pred             cccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEec
Q 046000          184 FLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDR  263 (470)
Q Consensus       184 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  263 (470)
                      .++.|++++|.+. .++...+..+++|++|++++|.+.+..|..|..+++|+.|++++|.+.......+   ++|++|++
T Consensus        53 ~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l  128 (330)
T 1xku_A           53 DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRV  128 (330)
T ss_dssp             TCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEEC
T ss_pred             CCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc---ccccEEEC
Confidence            4445555555444 2233223335556666666665555555566666666666666666653322221   56777777


Q ss_pred             CCCcCCCcchhhhcCcccccEEEcccccccc--ccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcc
Q 046000          264 SHNNFHDQIFPKYMNLTRLWFLYLDNNKFSG--KIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFL  341 (470)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~  341 (470)
                      ++|.+.......+..+++|+.+++++|.+..  ..+..+..+++|+.|++++|.+. .+|..+.   ..++.|++++|.+
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~l  204 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP---PSLTELHLDGNKI  204 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC---TTCSEEECTTSCC
T ss_pred             CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc---ccCCEEECCCCcC
Confidence            7777766666667777777777777776642  44556777888888888888876 4554432   4488889998888


Q ss_pred             cCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhh
Q 046000          342 KGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQI  420 (470)
Q Consensus       342 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~  420 (470)
                      .+..+..+..+++|+.|++++|.+.+.+...+ .+++|++|++++|++. .+|..+..+++|+.|++++|+++...+..+
T Consensus       205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence            87777888889999999999999888776554 7889999999999998 667778888999999999999987665555


Q ss_pred             hc------CCCCcEEEccCcccCc--ccchhhccCCCCCeEEccCcc
Q 046000          421 NE------SSNLRVLLLRGNYLEG--PISNQFCQLRRLGVMDLSHNR  459 (470)
Q Consensus       421 ~~------~~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~l~l~~n~  459 (470)
                      ..      .+.++.+++++|++..  ..|..+..++.++.+++++|+
T Consensus       284 ~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            33      3788999999999864  567888889999999999885

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=4.8e-30  Score=235.74  Aligned_cols=287  Identities=18%  Similarity=0.160  Sum_probs=214.1

Q ss_pred             CCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEc
Q 046000          160 KLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHL  239 (470)
Q Consensus       160 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  239 (470)
                      +++.++++++.+.... ..  ..++++.|++++|.+. .++...+..+++|++|++++|.+.+..+..|..+++|+.|++
T Consensus        34 ~l~~l~~~~~~l~~ip-~~--~~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVP-KE--ISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCSSCC-SC--CCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCccccC-CC--CCCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            4666666666655322 22  1356777777777766 333333444677777777777777666777777888888888


Q ss_pred             cccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcccccccc--ccchhhcCCCCccEEECCCCccc
Q 046000          240 SKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSG--KIEDGLLKSNQLKELDMSNNMLS  317 (470)
Q Consensus       240 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~  317 (470)
                      ++|.+.......+   ++|++|++++|.+.......+..+++|+.+++++|.+..  ..+..+..+ +|+.|++++|.+.
T Consensus       110 ~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            8877764433332   678888888888877666667788888888888887752  445555555 8889999999887


Q ss_pred             CCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccch
Q 046000          318 GHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNAL  396 (470)
Q Consensus       318 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l  396 (470)
                       .+|..+.   ..++.|++++|.+.+..+..+..+++|+.|++++|.+.+.+...+ .+++|++|++++|++. .+|..+
T Consensus       186 -~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l  260 (332)
T 2ft3_A          186 -GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL  260 (332)
T ss_dssp             -SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG
T ss_pred             -ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh
Confidence             4555433   458899999999987777888899999999999999998887555 7899999999999998 677778


Q ss_pred             hcCCCccEEEcCCccceeecchhhhc------CCCCcEEEccCcccC--cccchhhccCCCCCeEEccCcc
Q 046000          397 FRSSKLMTLDLRDNGFSGIISDQINE------SSNLRVLLLRGNYLE--GPISNQFCQLRRLGVMDLSHNR  459 (470)
Q Consensus       397 ~~~~~L~~L~l~~n~l~~~~~~~~~~------~~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~l~l~~n~  459 (470)
                      ..+++|+.|++++|+++...+..+..      .++|+.|++++|++.  +..+..+..++.|+.+++++|+
T Consensus       261 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            89999999999999998766666654      367999999999987  5778889999999999999885

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=2.3e-29  Score=231.21  Aligned_cols=292  Identities=15%  Similarity=0.148  Sum_probs=164.2

Q ss_pred             cCceeeccCCCCCCccc--cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccCcc
Q 046000           13 NLEALDLSFNNINGTVE--SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSY   90 (470)
Q Consensus        13 ~L~~L~ls~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~   90 (470)
                      +++.++++++.+...+.  .+++++|++++|.+.+..+.+|+++++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  113 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH  113 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred             cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence            45666666655543333  3445555555555554444455555555555555555554445555555555555555554


Q ss_pred             CcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccc
Q 046000           91 FEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNS  170 (470)
Q Consensus        91 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~  170 (470)
                      +. .+|                               ..+.  ++|++|++++|.+. .++...+..+++|+.|++++|.
T Consensus       114 l~-~l~-------------------------------~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~  158 (332)
T 2ft3_A          114 LV-EIP-------------------------------PNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNP  158 (332)
T ss_dssp             CC-SCC-------------------------------SSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCC
T ss_pred             CC-ccC-------------------------------cccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCc
Confidence            43 222                               1111  46777777777777 5666566677788888888777


Q ss_pred             cCC--ccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEcccccccccc
Q 046000          171 FTG--NLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGEL  248 (470)
Q Consensus       171 i~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  248 (470)
                      +..  ..+..+..+ +|++|++++|.+. .+|...+   ++|++|++++|.+.+..+..+..+++|+.|++++|.+....
T Consensus       159 l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~  233 (332)
T 2ft3_A          159 LENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE  233 (332)
T ss_dssp             CBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC
T ss_pred             cccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC
Confidence            653  334445555 7777777777776 4555442   57777777777777655566677777777777777766655


Q ss_pred             CccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhh
Q 046000          249 STLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFS  328 (470)
Q Consensus       249 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  328 (470)
                      +..+..+++|++|++++|.+.. .+..+..+++|+.+++++|.+++.....+.....                   ....
T Consensus       234 ~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-------------------~~~~  293 (332)
T 2ft3_A          234 NGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF-------------------GVKR  293 (332)
T ss_dssp             TTGGGGCTTCCEEECCSSCCCB-CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC-------------------CSSS
T ss_pred             hhHhhCCCCCCEEECCCCcCee-cChhhhcCccCCEEECCCCCCCccChhHcccccc-------------------cccc
Confidence            5566666666666666666652 3334555556666666665555433333322100                   0001


Q ss_pred             ccccEEEcCCCccc--CCCchhhhccCCCeEEEccCcc
Q 046000          329 SYLEVLLMSKNFLK--GNIPMQLLNHGSLQLLSVSENC  364 (470)
Q Consensus       329 ~~l~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~  364 (470)
                      ..++.+++.+|.+.  ...+..+..+++|+.+++++|+
T Consensus       294 ~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          294 AYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            12445555555443  3445566667777777777653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=4.5e-29  Score=229.17  Aligned_cols=289  Identities=19%  Similarity=0.156  Sum_probs=172.3

Q ss_pred             ccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCc
Q 046000          105 KLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDF  184 (470)
Q Consensus       105 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~  184 (470)
                      +++.++++++.+..+..       .+  .+.+++|++++|.++ .++...+..+++|++|++++|.+....+..+..+++
T Consensus        32 ~l~~l~~~~~~l~~lp~-------~~--~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPK-------DL--PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK  101 (330)
T ss_dssp             ETTEEECTTSCCCSCCC-------SC--CTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred             CCeEEEecCCCccccCc-------cC--CCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCC
Confidence            56677776665442221       11  245777777777776 455544556777777777777777665666777777


Q ss_pred             ccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEcccccccc--ccCccccCCCcccEEe
Q 046000          185 LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSG--ELSTLFTGCVSLWFLD  262 (470)
Q Consensus       185 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~  262 (470)
                      |++|++++|.+. .+|...+   ++|++|++++|.+.+..+..+..+++|+.|++++|.+..  ..+..+..+++|++|+
T Consensus       102 L~~L~Ls~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~  177 (330)
T 1xku_A          102 LERLYLSKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR  177 (330)
T ss_dssp             CCEEECCSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred             CCEEECCCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEE
Confidence            777777777766 5555443   567777777777665555566667777777777666642  3344555566666666


Q ss_pred             cCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCccc
Q 046000          263 RSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLK  342 (470)
Q Consensus       263 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~  342 (470)
                      +++|.+..... .+  .++|+.+++++|.+.+..+..+..+++                         ++.|++++|.+.
T Consensus       178 l~~n~l~~l~~-~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~-------------------------L~~L~Ls~n~l~  229 (330)
T 1xku_A          178 IADTNITTIPQ-GL--PPSLTELHLDGNKITKVDAASLKGLNN-------------------------LAKLGLSFNSIS  229 (330)
T ss_dssp             CCSSCCCSCCS-SC--CTTCSEEECTTSCCCEECTGGGTTCTT-------------------------CCEEECCSSCCC
T ss_pred             CCCCccccCCc-cc--cccCCEEECCCCcCCccCHHHhcCCCC-------------------------CCEEECCCCcCc
Confidence            66665543211 11  144444444444444333344444444                         555555555554


Q ss_pred             CCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhc------CCCccEEEcCCcccee--
Q 046000          343 GNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFR------SSKLMTLDLRDNGFSG--  414 (470)
Q Consensus       343 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~------~~~L~~L~l~~n~l~~--  414 (470)
                      +..+..+..+++|+.|++++|.+..++.....+++|++|++++|++++..+..+..      .+.++.+++++|++..  
T Consensus       230 ~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~  309 (330)
T 1xku_A          230 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE  309 (330)
T ss_dssp             EECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred             eeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence            44444556666777777777777666655556677777777777776555444432      3667778888887643  


Q ss_pred             ecchhhhcCCCCcEEEccCcc
Q 046000          415 IISDQINESSNLRVLLLRGNY  435 (470)
Q Consensus       415 ~~~~~~~~~~~L~~L~l~~n~  435 (470)
                      ..+..+..+++++.+++++|+
T Consensus       310 i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          310 IQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SCGGGGTTCCCGGGEEC----
T ss_pred             cCccccccccceeEEEecccC
Confidence            445667777788888887774

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.97  E-value=4.2e-31  Score=262.89  Aligned_cols=425  Identities=13%  Similarity=0.078  Sum_probs=227.8

Q ss_pred             cccccCCCcCceeeccCCCCC-----------Ccc---------ccccccccccccccCCCCchHhhhc-CCC-CcEEEc
Q 046000            5 GAGLHKLKNLEALDLSFNNIN-----------GTV---------ESQESFELNLAKNNIGGHLLDCLNN-MTR-LKVLDT   62 (470)
Q Consensus         5 ~~~l~~~~~L~~L~ls~~~~~-----------~~~---------~~~~L~~L~l~~~~~~~~~~~~~~~-~~~-L~~L~l   62 (470)
                      +..++++++|++|+++++...           +..         .+++|++|++++|.+++..+..+.. ++. |++|++
T Consensus        66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L  145 (592)
T 3ogk_B           66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL  145 (592)
T ss_dssp             HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred             HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence            445667888999999875321           000         2566777777777666555555554 333 777777


Q ss_pred             cCCc-ccc-ccchhhhcCcCCcEEeccCccCcCccC---hhhhccccccceecccCCCCccccccccCCCCcccccCccc
Q 046000           63 SFNQ-LSG-SLPSVIVNLASVEYLDLSNSYFEGTFP---ISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLK  137 (470)
Q Consensus        63 ~~~~-i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~  137 (470)
                      ++|. +.. .++.....+++|++|++++|.+.+...   ......+++|++|+++.+.+....  ...+...+..+++|+
T Consensus       146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~--~~~l~~~~~~~~~L~  223 (592)
T 3ogk_B          146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKIS--PKDLETIARNCRSLV  223 (592)
T ss_dssp             ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCC--HHHHHHHHHHCTTCC
T ss_pred             cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccC--HHHHHHHHhhCCCCc
Confidence            7665 211 122333466777777777776653321   124455667777777666543111  112222334556677


Q ss_pred             EEEccCccccCccchHhhhcCCCCcEEEccccccC---CccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceee
Q 046000          138 YLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFT---GNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYID  214 (470)
Q Consensus       138 ~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  214 (470)
                      +|++++|.+. .++ ..+..+++|+.+++++....   ......+..+++|+.+.++++... .++. .+..+++|++|+
T Consensus       224 ~L~L~~~~~~-~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~-~~~~~~~L~~L~  299 (592)
T 3ogk_B          224 SVKVGDFEIL-ELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPI-LFPFAAQIRKLD  299 (592)
T ss_dssp             EEECSSCBGG-GGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGG-GGGGGGGCCEEE
T ss_pred             EEeccCccHH-HHH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHH-HHhhcCCCcEEe
Confidence            7777776665 344 33456667777776643221   112233445556666666554222 2222 223355666666


Q ss_pred             ccCCccCCCCc-hhhcCCCCccEEEccccccccccCccccCCCcccEEecCC-----------CcCCCcchhhhcCcccc
Q 046000          215 MANNRFEGNLP-SSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSH-----------NNFHDQIFPKYMNLTRL  282 (470)
Q Consensus       215 l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-----------~~~~~~~~~~~~~~~~L  282 (470)
                      +++|.+.+... ..+..+++|+.|+++++......+.....+++|++|++++           +.+++....        
T Consensus       300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~--------  371 (592)
T 3ogk_B          300 LLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI--------  371 (592)
T ss_dssp             ETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH--------
T ss_pred             cCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH--------
Confidence            66655432111 2234555555555552211111122223344555555542           222221111        


Q ss_pred             cEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcC----CCcccCC-----CchhhhccC
Q 046000          283 WFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMS----KNFLKGN-----IPMQLLNHG  353 (470)
Q Consensus       283 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~----~~~~~~~-----~~~~~~~~~  353 (470)
                                     .....+++|+.|+++.+.+++.....+....+.++.|++.    .+.+++.     ++..+..++
T Consensus       372 ---------------~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~  436 (592)
T 3ogk_B          372 ---------------ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK  436 (592)
T ss_dssp             ---------------HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCT
T ss_pred             ---------------HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCC
Confidence                           1123345555555555555444444444423335555553    3334321     233355678


Q ss_pred             CCeEEEccCcc--ccCcccccc--ccCcccEEEccCCccccc-CccchhcCCCccEEEcCCccceee-cchhhhcCCCCc
Q 046000          354 SLQLLSVSENC--LSGFMTSSF--SLSSLVHLYVQRNDLSGT-IPNALFRSSKLMTLDLRDNGFSGI-ISDQINESSNLR  427 (470)
Q Consensus       354 ~L~~L~l~~~~--l~~~~~~~~--~~~~L~~L~l~~~~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~  427 (470)
                      +|+.|++++|.  +++......  .+++|++|++++|++++. .+..+..+++|+.|++++|++++. ++..+..+++|+
T Consensus       437 ~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  516 (592)
T 3ogk_B          437 KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLR  516 (592)
T ss_dssp             TCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCC
T ss_pred             CCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccC
Confidence            88888886543  433322222  478888888888888753 334456788888888888887643 344456788888


Q ss_pred             EEEccCcccCcccchhh-ccCCCCCeEEccCc
Q 046000          428 VLLLRGNYLEGPISNQF-CQLRRLGVMDLSHN  458 (470)
Q Consensus       428 ~L~l~~n~i~~~~~~~~-~~l~~L~~l~l~~n  458 (470)
                      +|++++|++++.....+ ..+|.+....+..+
T Consensus       517 ~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          517 YLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             EEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             eeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            88888888876544433 35676666655543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.97  E-value=2.7e-31  Score=264.27  Aligned_cols=410  Identities=16%  Similarity=0.052  Sum_probs=288.9

Q ss_pred             CchHhhhcCCCCcEEEccCCccc---cc------------cchhhhcCcCCcEEeccCccCcCccChhhhcc-ccc-cce
Q 046000           46 HLLDCLNNMTRLKVLDTSFNQLS---GS------------LPSVIVNLASVEYLDLSNSYFEGTFPISSLAN-HSK-LKV  108 (470)
Q Consensus        46 ~~~~~~~~~~~L~~L~l~~~~i~---~~------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~-L~~  108 (470)
                      ..+..+..+++|++|+++++...   +.            ++.....+++|++|++++|.+.+..+ ..+.. +++ |++
T Consensus        64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~-~~l~~~~~~~L~~  142 (592)
T 3ogk_B           64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDL-DRLAKARADDLET  142 (592)
T ss_dssp             CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHH-HHHHHHHGGGCCE
T ss_pred             ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHH-HHHHHhccccCcE
Confidence            34556778889999999875321   11            12223378899999999998764433 33433 445 999


Q ss_pred             ecccCCCCccccccccCCCCcccccCcccEEEccCccccCccc---hHhhhcCCCCcEEEccccccCCc----cCCCCCC
Q 046000          109 LRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFP---AWILQNNTKLEVLCLTNNSFTGN----LQLPHSK  181 (470)
Q Consensus       109 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~---~~~~~~~~~L~~L~l~~~~i~~~----~~~~~~~  181 (470)
                      |++++|..    .....+......+++|++|++++|.+.+...   ..+...+++|+.|+++++.+...    ....+..
T Consensus       143 L~L~~~~~----~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~  218 (592)
T 3ogk_B          143 LKLDKCSG----FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN  218 (592)
T ss_dssp             EEEESCEE----EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred             EECcCCCC----cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence            99988752    1111222223467889999999998875432   23456789999999998887622    2222346


Q ss_pred             CCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccC---CCCchhhcCCCCccEEEccccccccccCccccCCCcc
Q 046000          182 HDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFE---GNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSL  258 (470)
Q Consensus       182 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  258 (470)
                      +++|+.|++++|.+. .++ ..+..+++|++|+++.....   ......+..+++|+.++++++.. ...+..+..+++|
T Consensus       219 ~~~L~~L~L~~~~~~-~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L  295 (592)
T 3ogk_B          219 CRSLVSVKVGDFEIL-ELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQI  295 (592)
T ss_dssp             CTTCCEEECSSCBGG-GGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGC
T ss_pred             CCCCcEEeccCccHH-HHH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCC
Confidence            788999999998887 455 34455889999999864322   23345677889999999988543 3455667788999


Q ss_pred             cEEecCCCcCCCcch-hhhcCcccccEEEccccccccccchhhcCCCCccEEECCC-----------CcccCCcchhHHh
Q 046000          259 WFLDRSHNNFHDQIF-PKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSN-----------NMLSGHIPHWIAN  326 (470)
Q Consensus       259 ~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~-----------~~~~~~~~~~~~~  326 (470)
                      ++|++++|.+.+... ..+..+++|+.|+++++............+++|++|++++           +.+++.....+..
T Consensus       296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~  375 (592)
T 3ogk_B          296 RKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ  375 (592)
T ss_dssp             CEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH
T ss_pred             cEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHh
Confidence            999999999765444 3467899999999984322223334446789999999994           4555433444444


Q ss_pred             hhccccEEEcCCCcccCCCchhhhc-cCCCeEEEcc----CccccCcccc------ccccCcccEEEccCCc--ccccCc
Q 046000          327 FSSYLEVLLMSKNFLKGNIPMQLLN-HGSLQLLSVS----ENCLSGFMTS------SFSLSSLVHLYVQRND--LSGTIP  393 (470)
Q Consensus       327 ~~~~l~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~l~~~~~~------~~~~~~L~~L~l~~~~--l~~~~~  393 (470)
                      ..+.+++|++..+.+++..+..+.. +++|+.|+++    .+.+++.+..      ...+++|++|+++.|.  +++...
T Consensus       376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~  455 (592)
T 3ogk_B          376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL  455 (592)
T ss_dssp             HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred             hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence            3445999999888887666666654 9999999997    5567664322      2268999999998654  555544


Q ss_pred             cchh-cCCCccEEEcCCcccee-ecchhhhcCCCCcEEEccCcccCcc-cchhhccCCCCCeEEccCcccccc
Q 046000          394 NALF-RSSKLMTLDLRDNGFSG-IISDQINESSNLRVLLLRGNYLEGP-ISNQFCQLRRLGVMDLSHNRINGS  463 (470)
Q Consensus       394 ~~l~-~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~l~l~~n~~~~~  463 (470)
                      ..+. .+++|+.|++++|++++ .++..+.++++|++|++++|++++. ++.....+++|+.|++++|+++..
T Consensus       456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            4443 48999999999999875 3455668899999999999998754 445567899999999999999865

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=9.9e-30  Score=231.01  Aligned_cols=250  Identities=22%  Similarity=0.301  Sum_probs=202.8

Q ss_pred             CCCcEEEccccccCC--ccCCCCCCCCcccEEeccC-CcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCcc
Q 046000          159 TKLEVLCLTNNSFTG--NLQLPHSKHDFLHHLDVSS-NNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLT  235 (470)
Q Consensus       159 ~~L~~L~l~~~~i~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  235 (470)
                      .+++.|+++++.+.+  ..+..+..+++|++|++++ +.+.+.+|..+.. +++|++|++++|.+.+..|..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            579999999999987  6778899999999999995 8888788877654 89999999999999888899999999999


Q ss_pred             EEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCC-CccEEECCCC
Q 046000          236 FLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSN-QLKELDMSNN  314 (470)
Q Consensus       236 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~  314 (470)
                      +|++++|.+....+..+..+++|++|++++|.+....+..                        +..++ +|+.|++++|
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~------------------------l~~l~~~L~~L~L~~N  184 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS------------------------YGSFSKLFTSMTISRN  184 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG------------------------GGCCCTTCCEEECCSS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH------------------------HhhhhhcCcEEECcCC
Confidence            9999999988777777777777777777776665433333                        44444 5556666666


Q ss_pred             cccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCcc
Q 046000          315 MLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPN  394 (470)
Q Consensus       315 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  394 (470)
                      .+.+..|..+....  ++.|++++|.+.+..+..+..+++|+.|++++|.+....+....+++|++|++++|.+.+..|.
T Consensus       185 ~l~~~~~~~~~~l~--L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  262 (313)
T 1ogq_A          185 RLTGKIPPTFANLN--LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ  262 (313)
T ss_dssp             EEEEECCGGGGGCC--CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG
T ss_pred             eeeccCChHHhCCc--ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCCh
Confidence            55555555555443  6677777777666677778888899999999999887666655789999999999999988999


Q ss_pred             chhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCccc
Q 046000          395 ALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYL  436 (470)
Q Consensus       395 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i  436 (470)
                      .+..+++|+.|++++|++++.+|.. ..+++|+.+++++|+.
T Consensus       263 ~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~  303 (313)
T 1ogq_A          263 GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC  303 (313)
T ss_dssp             GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred             HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCC
Confidence            9999999999999999999888876 8899999999999984

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=2.9e-28  Score=225.88  Aligned_cols=256  Identities=21%  Similarity=0.150  Sum_probs=137.1

Q ss_pred             cCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcc
Q 046000          209 KLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLD  288 (470)
Q Consensus       209 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  288 (470)
                      +|++|++++|.+.+..+..|..+++|+.|++++|.+....+..+..+++|++|++++|.+.......+..+++|++|+++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            45555555555544333345555555555555555554444455555555555555555554444445555555555555


Q ss_pred             ccccccccc-hhhcCCCCccEEECCCCc-ccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCcccc
Q 046000          289 NNKFSGKIE-DGLLKSNQLKELDMSNNM-LSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLS  366 (470)
Q Consensus       289 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  366 (470)
                      +|.+.+... ..+..+++|++|++++|. +.+..+..+..+.. ++.|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus       133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF-LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE-EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred             CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC-CCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence            555553332 244555555555555553 33222333333333 556666666555555555666666666666666665


Q ss_pred             Ccccccc-ccCcccEEEccCCcccccCccch---hcCCCccEEEcCCcccee----ecchhhhcCCCCcEEEccCcccCc
Q 046000          367 GFMTSSF-SLSSLVHLYVQRNDLSGTIPNAL---FRSSKLMTLDLRDNGFSG----IISDQINESSNLRVLLLRGNYLEG  438 (470)
Q Consensus       367 ~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l---~~~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~i~~  438 (470)
                      ..+...+ .+++|++|++++|++.+..+..+   ...+.++.++++++.+.+    .+|+.+..+++|++|++++|+++.
T Consensus       212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~  291 (353)
T 2z80_A          212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS  291 (353)
T ss_dssp             THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred             cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence            5544433 35666666666666654433222   223455566666555543    245556666677777777776663


Q ss_pred             ccchhhccCCCCCeEEccCcccccccC
Q 046000          439 PISNQFCQLRRLGVMDLSHNRINGSIP  465 (470)
Q Consensus       439 ~~~~~~~~l~~L~~l~l~~n~~~~~~p  465 (470)
                      ..+..+..+++|+.|++++|++++..|
T Consensus       292 i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          292 VPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            333334666777777777776665544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.96  E-value=1.8e-30  Score=258.59  Aligned_cols=158  Identities=16%  Similarity=0.120  Sum_probs=74.3

Q ss_pred             cccCCCcCceeeccCCCCC-Cc-------------------cccccccccccccccCCCCchHhhh-cCCCCcEEEccCC
Q 046000            7 GLHKLKNLEALDLSFNNIN-GT-------------------VESQESFELNLAKNNIGGHLLDCLN-NMTRLKVLDTSFN   65 (470)
Q Consensus         7 ~l~~~~~L~~L~ls~~~~~-~~-------------------~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~   65 (470)
                      .+.++++|+.|+++++... +.                   ..+++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            3556777888888776421 00                   0144566666666665554444443 4566666666665


Q ss_pred             -ccccc-cchhhhcCcCCcEEeccCccCcCccC---hhhhccccccceecccCCCCccccccccCCCCcccccCcccEEE
Q 046000           66 -QLSGS-LPSVIVNLASVEYLDLSNSYFEGTFP---ISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLD  140 (470)
Q Consensus        66 -~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  140 (470)
                       .+.+. .+.....+++|++|++++|.+++..+   ......+++|++|+++.+. ....  ...+......+++|++|+
T Consensus       141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~--~~~l~~l~~~~~~L~~L~  217 (594)
T 2p1m_B          141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVS--FSALERLVTRCPNLKSLK  217 (594)
T ss_dssp             EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCC--HHHHHHHHHHCTTCCEEE
T ss_pred             CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCC--HHHHHHHHHhCCCCcEEe
Confidence             33321 33333456666666666665443221   0112244556666665543 0000  001111122345566666


Q ss_pred             ccCccccCccchHhhhcCCCCcEEEccc
Q 046000          141 LSHNNLAGDFPAWILQNNTKLEVLCLTN  168 (470)
Q Consensus       141 l~~~~i~~~~~~~~~~~~~~L~~L~l~~  168 (470)
                      +++|...+.++ ..+..+++|+.|+++.
T Consensus       218 L~~~~~~~~l~-~~~~~~~~L~~L~l~~  244 (594)
T 2p1m_B          218 LNRAVPLEKLA-TLLQRAPQLEELGTGG  244 (594)
T ss_dssp             CCTTSCHHHHH-HHHHHCTTCSEEECSB
T ss_pred             cCCCCcHHHHH-HHHhcCCcceEccccc
Confidence            65552211222 2333555555555443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.95  E-value=2.6e-29  Score=250.16  Aligned_cols=423  Identities=14%  Similarity=0.044  Sum_probs=234.4

Q ss_pred             cccccccccccccCCCC---------------chHhhhcCCCCcEEEccCCccccccchhhh-cCcCCcEEeccCc-cCc
Q 046000           30 SQESFELNLAKNNIGGH---------------LLDCLNNMTRLKVLDTSFNQLSGSLPSVIV-NLASVEYLDLSNS-YFE   92 (470)
Q Consensus        30 ~~~L~~L~l~~~~~~~~---------------~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~-~l~~L~~L~l~~~-~~~   92 (470)
                      +++|++|+++++.....               ++.....+++|++|++++|.+.+..+..+. .+++|++|++++| .+.
T Consensus        65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~  144 (594)
T 2p1m_B           65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS  144 (594)
T ss_dssp             CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred             CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence            56777888877642211               122235677888888888877766666665 6788888888887 443


Q ss_pred             CccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCcc--ccCccchHhhhcCCCCcEEEcccc-
Q 046000           93 GTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNN--LAGDFPAWILQNNTKLEVLCLTNN-  169 (470)
Q Consensus        93 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--i~~~~~~~~~~~~~~L~~L~l~~~-  169 (470)
                      +.........+++|++|++++|.+.....  ..+......+++|++|+++++.  +.......+...+++|+.|++++| 
T Consensus       145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~  222 (594)
T 2p1m_B          145 TDGLAAIAATCRNLKELDLRESDVDDVSG--HWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV  222 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTCEEECCCG--GGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred             HHHHHHHHHhCCCCCEEeCcCCccCCcch--HHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence            22222344567888888888776432211  1112223355678888888775  222222233345677888888776 


Q ss_pred             ccCCccCCCCCCCCcccEEeccCCcc-------cCCCCcchhhhhccCcee-eccCCccCCCCchhhcCCCCccEEEccc
Q 046000          170 SFTGNLQLPHSKHDFLHHLDVSSNNF-------TGKLPQDKGIILQKLLYI-DMANNRFEGNLPSSIGDMKTLTFLHLSK  241 (470)
Q Consensus       170 ~i~~~~~~~~~~~~~L~~L~l~~~~~-------~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~l~~l~~L~~L~l~~  241 (470)
                      .+.+ .+..+..+++|++|.++.+..       . .++. ....+++|+.+ .+.+... ..++..+..+++|+.|++++
T Consensus       223 ~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~-~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~  298 (594)
T 2p1m_B          223 PLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSV-ALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSY  298 (594)
T ss_dssp             CHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHH-HHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTT
T ss_pred             cHHH-HHHHHhcCCcceEcccccccCccchhhHH-HHHH-HHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccC
Confidence            2221 333344566777777655431       1 1111 22335666666 2322221 12333344567777777777


Q ss_pred             ccccccc-CccccCCCcccEEecCCCcCCCcchhhh-cCcccccEEEccc---------cccccccchhh-cCCCCccEE
Q 046000          242 NNFSGEL-STLFTGCVSLWFLDRSHNNFHDQIFPKY-MNLTRLWFLYLDN---------NKFSGKIEDGL-LKSNQLKEL  309 (470)
Q Consensus       242 ~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~l~~---------~~~~~~~~~~~-~~~~~L~~L  309 (470)
                      |.+.... ...+..+++|+.|++++| +.+.....+ ..+++|+.|++.+         +.+++.....+ ..+++|+.|
T Consensus       299 ~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L  377 (594)
T 2p1m_B          299 ATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV  377 (594)
T ss_dssp             CCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHH
Confidence            7654322 222446677777777766 333222222 2467777777733         23332222222 236777777


Q ss_pred             ECCCCcccCCcchhHHhhhccccEEEcC--C----CcccC-----CCchhhhccCCCeEEEccCccccCcccccc--ccC
Q 046000          310 DMSNNMLSGHIPHWIANFSSYLEVLLMS--K----NFLKG-----NIPMQLLNHGSLQLLSVSENCLSGFMTSSF--SLS  376 (470)
Q Consensus       310 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~--~----~~~~~-----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~--~~~  376 (470)
                      .+..+.+++.....+....+.++.|++.  +    +.++.     .++..+..+++|+.|++++ .+++......  .++
T Consensus       378 ~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~  456 (594)
T 2p1m_B          378 LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAK  456 (594)
T ss_dssp             EEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCT
T ss_pred             HHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhch
Confidence            7666666655455554433347777776  2    23331     1122245667777777765 4433322222  266


Q ss_pred             cccEEEccCCcccccCccch-hcCCCccEEEcCCccceeecch-hhhcCCCCcEEEccCcccCcccchhh-ccCCCCCeE
Q 046000          377 SLVHLYVQRNDLSGTIPNAL-FRSSKLMTLDLRDNGFSGIISD-QINESSNLRVLLLRGNYLEGPISNQF-CQLRRLGVM  453 (470)
Q Consensus       377 ~L~~L~l~~~~l~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~l  453 (470)
                      +|++|++++|++++.....+ ..+++|+.|++++|++++.... ....+++|++|++++|+++......+ ..+|.|+..
T Consensus       457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~  536 (594)
T 2p1m_B          457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVE  536 (594)
T ss_dssp             TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEE
T ss_pred             hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEE
Confidence            77777777777765444444 5567777777777777433222 33456777777777777754444444 456666666


Q ss_pred             EccCccc
Q 046000          454 DLSHNRI  460 (470)
Q Consensus       454 ~l~~n~~  460 (470)
                      .+.++.-
T Consensus       537 ~~~~~~~  543 (594)
T 2p1m_B          537 VIDERGA  543 (594)
T ss_dssp             EECSSSC
T ss_pred             EecCCCc
Confidence            6665543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.2e-27  Score=217.25  Aligned_cols=259  Identities=22%  Similarity=0.207  Sum_probs=129.3

Q ss_pred             cCceeeccCCccCCCCchhhcCCCCccEEEcccccccccc--CccccCCCcccEEecCCCcCCCcchhhhcCcccccEEE
Q 046000          209 KLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGEL--STLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLY  286 (470)
Q Consensus       209 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~  286 (470)
                      ++++|++++|.+....+..|..+++|+.|++++|.+....  +..+..+++|++|++++|.+.. .+..+..+++|+.|+
T Consensus        29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~  107 (306)
T 2z66_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD  107 (306)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEE
T ss_pred             CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEE
Confidence            3444444444443222222344444444444444333211  2222233444444444444332 122233444444444


Q ss_pred             ccccccccccc-hhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccC-CCchhhhccCCCeEEEccCcc
Q 046000          287 LDNNKFSGKIE-DGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKG-NIPMQLLNHGSLQLLSVSENC  364 (470)
Q Consensus       287 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~  364 (470)
                      +++|.+.+... ..+..+++|+.|++++|.+.+..+..+..+.. ++.|++++|.+.+ ..|..+..+++|+.|++++|.
T Consensus       108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  186 (306)
T 2z66_A          108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  186 (306)
T ss_dssp             CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTT-CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcC-CCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence            44444443222 23444555555555555544333333333333 5555555555543 345555666667777777776


Q ss_pred             ccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCC-CCcEEEccCcccCcccc-
Q 046000          365 LSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESS-NLRVLLLRGNYLEGPIS-  441 (470)
Q Consensus       365 l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~i~~~~~-  441 (470)
                      +.+.++..+ .+++|++|++++|++.+..+..+..+++|+.|++++|++.+..+..+..++ +|++|++++|++.+.-. 
T Consensus       187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~  266 (306)
T 2z66_A          187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  266 (306)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred             cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence            666544443 566777777777776655555666667777777777777666666666663 67777777777653211 


Q ss_pred             -hhhccCCCCCeEEccCcccccccCCCcc
Q 046000          442 -NQFCQLRRLGVMDLSHNRINGSIPSCFT  469 (470)
Q Consensus       442 -~~~~~l~~L~~l~l~~n~~~~~~p~~~~  469 (470)
                       ....-+...+.+.+..++++...|+.+.
T Consensus       267 ~~~~~~l~~~~~~~~~~~~~~C~~p~~~~  295 (306)
T 2z66_A          267 QSFLQWIKDQRQLLVEVERMECATPSDKQ  295 (306)
T ss_dssp             HHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred             HHHHHHHHhhhhhhccccccccCCchhhC
Confidence             1111122334445555666666665543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=8e-27  Score=211.83  Aligned_cols=249  Identities=19%  Similarity=0.182  Sum_probs=211.9

Q ss_pred             ceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcc--hhhhcCcccccEEEcc
Q 046000          211 LYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQI--FPKYMNLTRLWFLYLD  288 (470)
Q Consensus       211 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~l~l~  288 (470)
                      +.++++++.+. .+|..+  .++++.|++++|.+.......+..+++|++|++++|.+....  ...+..+++|++|+++
T Consensus        10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            45677777766 455433  368999999999999777777899999999999999987542  4566679999999999


Q ss_pred             ccccccccchhhcCCCCccEEECCCCcccCCcc-hhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccC
Q 046000          289 NNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIP-HWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSG  367 (470)
Q Consensus       289 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  367 (470)
                      +|.+.. .+..+..+++|++|++++|.+.+..+ ..+..+.. ++.|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus        87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  164 (306)
T 2z66_A           87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE  164 (306)
T ss_dssp             SCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT-CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred             CCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccC-CCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence            999884 55568899999999999999984443 35555555 9999999999988888889999999999999999976


Q ss_pred             --ccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhc
Q 046000          368 --FMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFC  445 (470)
Q Consensus       368 --~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  445 (470)
                        .+.....+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|++.+..+..+.
T Consensus       165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  244 (306)
T 2z66_A          165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ  244 (306)
T ss_dssp             GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred             ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence              344444789999999999999988888999999999999999999987777889999999999999999998999999


Q ss_pred             cCC-CCCeEEccCccccccc
Q 046000          446 QLR-RLGVMDLSHNRINGSI  464 (470)
Q Consensus       446 ~l~-~L~~l~l~~n~~~~~~  464 (470)
                      .++ +|+.|++++|++++..
T Consensus       245 ~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          245 HFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             CCCTTCCEEECTTCCEECSG
T ss_pred             hhhccCCEEEccCCCeeccc
Confidence            985 9999999999998654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=4.5e-27  Score=217.85  Aligned_cols=279  Identities=18%  Similarity=0.172  Sum_probs=182.4

Q ss_pred             cCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCce
Q 046000          133 KHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLY  212 (470)
Q Consensus       133 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  212 (470)
                      ++.....+.+++.++ .+|..+.   +++++|++++|.+.......+..+++|++|++++|.+.+ ++...+..+++|++
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~  104 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEH  104 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCE
T ss_pred             CCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc-cCHhhcCCCCCCCE
Confidence            345556777777777 6776442   478888888888776666667777888888888887763 33333444677778


Q ss_pred             eeccCCccCCCCchhhcCCCCccEEEccccccccccC-ccccCCCcccEEecCCCc-CCCcchhhhcCcccccEEEcccc
Q 046000          213 IDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELS-TLFTGCVSLWFLDRSHNN-FHDQIFPKYMNLTRLWFLYLDNN  290 (470)
Q Consensus       213 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~  290 (470)
                      |++++|.+.+..+..+..+++|+.|++++|.+..... ..+..+++|++|++++|. +.......+..+++|+.+++++|
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence            8887777775544557777777777777777765444 456667777777777763 44444455666667777777766


Q ss_pred             ccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccc
Q 046000          291 KFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMT  370 (470)
Q Consensus       291 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  370 (470)
                      .+.+..+..+..+++|++|++++|.+. .++..+..                        .+++|+.|++++|.+.+.+.
T Consensus       185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~------------------------~~~~L~~L~L~~n~l~~~~~  239 (353)
T 2z80_A          185 DLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVD------------------------VTSSVECLELRDTDLDTFHF  239 (353)
T ss_dssp             TCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHH------------------------HTTTEEEEEEESCBCTTCCC
T ss_pred             CcCccCHHHHhccccCCeecCCCCccc-cchhhhhh------------------------hcccccEEECCCCccccccc
Confidence            666555556666666666666666654 33333332                        34455555555555444332


Q ss_pred             ccc----ccCcccEEEccCCcccc----cCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccc
Q 046000          371 SSF----SLSSLVHLYVQRNDLSG----TIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPIS  441 (470)
Q Consensus       371 ~~~----~~~~L~~L~l~~~~l~~----~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~  441 (470)
                      ...    ..+.++.+++.++.+.+    .+|..+..+++|+.|++++|+++......+..+++|++|++++|++.+..+
T Consensus       240 ~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          240 SELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             C------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            222    24566777777776654    345677888899999999998885444445888899999999998876443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=4e-26  Score=217.84  Aligned_cols=248  Identities=19%  Similarity=0.195  Sum_probs=164.8

Q ss_pred             ccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecC
Q 046000          185 LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRS  264 (470)
Q Consensus       185 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  264 (470)
                      ...++..+..+. .+|..+.   +.++.|++++|.+....+..|..+++|+.|++++|.+....+..|.++++|++|+++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            456677776666 6776553   577888888888876666778888888888888888877777777788888888888


Q ss_pred             CCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCC
Q 046000          265 HNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGN  344 (470)
Q Consensus       265 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~  344 (470)
                      +|.+.......+..+++|+.|++++|.+.......+..+++|+.|++++|...+.++.                      
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~----------------------  178 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE----------------------  178 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT----------------------
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc----------------------
Confidence            8877766666677777788888877777765556677777777777776443222222                      


Q ss_pred             CchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCC
Q 046000          345 IPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESS  424 (470)
Q Consensus       345 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~  424 (470)
                        ..+..+++|+.|++++|.++.++. ...+++|++|++++|++.+..+..+..+++|+.|++++|++....+..+..++
T Consensus       179 --~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  255 (440)
T 3zyj_A          179 --GAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ  255 (440)
T ss_dssp             --TTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT
T ss_pred             --chhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCC
Confidence              234445556666666665555442 22456666666666666655556666666666666666666655555666666


Q ss_pred             CCcEEEccCcccCcccchhhccCCCCCeEEccCcccc
Q 046000          425 NLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRIN  461 (470)
Q Consensus       425 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~  461 (470)
                      +|++|+|++|+++...+..+..+++|+.|++++|++.
T Consensus       256 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            6666666666666555555666666666666666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=5.5e-26  Score=217.69  Aligned_cols=249  Identities=20%  Similarity=0.186  Sum_probs=178.1

Q ss_pred             ccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecC
Q 046000          185 LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRS  264 (470)
Q Consensus       185 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  264 (470)
                      ...++.++..+. .+|..+   .+++++|++++|.+.+..+..|..+++|+.|++++|.+....+..|.++++|++|+++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            456677776666 666654   3578888888888887777778888888888888888887777778888888888888


Q ss_pred             CCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCC
Q 046000          265 HNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGN  344 (470)
Q Consensus       265 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~  344 (470)
                      +|.+.......+..+++|+.|++++|.+.......+..+++|+.|++++|...+.++                       
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-----------------------  188 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS-----------------------  188 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC-----------------------
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC-----------------------
Confidence            888777666667777888888888877776555667777777777777643322222                       


Q ss_pred             CchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCC
Q 046000          345 IPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESS  424 (470)
Q Consensus       345 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~  424 (470)
                       +..+..+++|+.|++++|.+.+++. ...+++|++|++++|.+.+..+..+..+++|+.|++++|++....+..+..++
T Consensus       189 -~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  266 (452)
T 3zyi_A          189 -EGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA  266 (452)
T ss_dssp             -TTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             -hhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCC
Confidence             2234556667777777776666542 33567777777777777766667777777777777777777766667777777


Q ss_pred             CCcEEEccCcccCcccchhhccCCCCCeEEccCccccc
Q 046000          425 NLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRING  462 (470)
Q Consensus       425 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~  462 (470)
                      +|++|+|++|++++..+..+..+++|+.|++++|++..
T Consensus       267 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          267 SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             TCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             CCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            77777777777776666667777777777777777654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.3e-26  Score=208.08  Aligned_cols=223  Identities=23%  Similarity=0.212  Sum_probs=130.9

Q ss_pred             cEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCC
Q 046000          186 HHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSH  265 (470)
Q Consensus       186 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  265 (470)
                      +.++.++..+. .+|...   .+++++|++++|.+.+..+..|..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            45666666655 555433   34677777777777655555666777777777777766666566666667777777776


Q ss_pred             Cc-CCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCC
Q 046000          266 NN-FHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGN  344 (470)
Q Consensus       266 ~~-~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~  344 (470)
                      |. +.......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.                         +.
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------------------------~~  144 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-------------------------AL  144 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------------CC
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-------------------------cc
Confidence            65 55444555556666666666666665544555555556666666555554                         22


Q ss_pred             CchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcC
Q 046000          345 IPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINES  423 (470)
Q Consensus       345 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~  423 (470)
                      .+..+..+++|+.|++++|.+++++...+ .+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+
T Consensus       145 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  224 (285)
T 1ozn_A          145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL  224 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred             CHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccC
Confidence            23334445555555555555555544433 45555556665555555555555555566666666665554444445555


Q ss_pred             CCCcEEEccCcccC
Q 046000          424 SNLRVLLLRGNYLE  437 (470)
Q Consensus       424 ~~L~~L~l~~n~i~  437 (470)
                      ++|++|++++|++.
T Consensus       225 ~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          225 RALQYLRLNDNPWV  238 (285)
T ss_dssp             TTCCEEECCSSCEE
T ss_pred             cccCEEeccCCCcc
Confidence            66666666666554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=2.3e-26  Score=210.05  Aligned_cols=234  Identities=16%  Similarity=0.149  Sum_probs=169.8

Q ss_pred             ccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEc
Q 046000          208 QKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYL  287 (470)
Q Consensus       208 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l  287 (470)
                      ++++.|+++++.+. .+|..+..+++|+.|++++|.+. ..+..+..+++|++|++++|.+. .++..+..+++|+.|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            56777777777766 55556666777777777777666 45555666666666666666665 33445555666666666


Q ss_pred             cccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccC
Q 046000          288 DNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSG  367 (470)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  367 (470)
                      ++|+..+..+..+..      ..+.         ..+..+.. ++.|++++|.++ .+|..+..+++|+.|++++|.+..
T Consensus       158 ~~n~~~~~~p~~~~~------~~~~---------~~~~~l~~-L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~  220 (328)
T 4fcg_A          158 RACPELTELPEPLAS------TDAS---------GEHQGLVN-LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA  220 (328)
T ss_dssp             EEETTCCCCCSCSEE------EC-C---------CCEEESTT-CCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred             CCCCCccccChhHhh------ccch---------hhhccCCC-CCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence            665544333332221      0000         00111333 777777777776 677778888899999999998888


Q ss_pred             ccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccC
Q 046000          368 FMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQL  447 (470)
Q Consensus       368 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l  447 (470)
                      ++.....+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+.++
T Consensus       221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L  300 (328)
T 4fcg_A          221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL  300 (328)
T ss_dssp             CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred             CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence            77765578899999999988888888888899999999999998888888889999999999999999988999999999


Q ss_pred             CCCCeEEccCcccc
Q 046000          448 RRLGVMDLSHNRIN  461 (470)
Q Consensus       448 ~~L~~l~l~~n~~~  461 (470)
                      +.|+.+++..+.+.
T Consensus       301 ~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          301 PANCIILVPPHLQA  314 (328)
T ss_dssp             CTTCEEECCGGGSC
T ss_pred             cCceEEeCCHHHHH
Confidence            99999998877655

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.4e-27  Score=217.44  Aligned_cols=267  Identities=17%  Similarity=0.171  Sum_probs=202.5

Q ss_pred             ccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecC
Q 046000          185 LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRS  264 (470)
Q Consensus       185 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  264 (470)
                      ++..+++.+.+. ..+...+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+....+  +..+++|++|+++
T Consensus        12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            444455555544 3334445556788888888888887777788888888888888888875544  7788888888888


Q ss_pred             CCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCC
Q 046000          265 HNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGN  344 (470)
Q Consensus       265 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~  344 (470)
                      +|.+....     ..++|+.+++++|.+.+....   .+++|++|++++|.+.+..+..+..+.. ++.|++++|.+.+.
T Consensus        89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           89 NNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTV  159 (317)
T ss_dssp             SSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSS-EEEEECTTSCCCEE
T ss_pred             CCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCC-CCEEECCCCCCCcc
Confidence            88775422     348888888888888755443   3678899999999888555556655555 88999999988766


Q ss_pred             Cchhh-hccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcC
Q 046000          345 IPMQL-LNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINES  423 (470)
Q Consensus       345 ~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~  423 (470)
                      .+..+ ..+++|++|++++|.+++++... .+++|++|++++|++.+. +..+..+++|+.|++++|++. .+|..+..+
T Consensus       160 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l  236 (317)
T 3o53_A          160 NFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFS  236 (317)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred             cHHHHhhccCcCCEEECCCCcCccccccc-ccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence            66655 46889999999999988775444 478999999999999854 444788899999999999998 467778888


Q ss_pred             CCCcEEEccCcccC-cccchhhccCCCCCeEEccCc-ccccccCC
Q 046000          424 SNLRVLLLRGNYLE-GPISNQFCQLRRLGVMDLSHN-RINGSIPS  466 (470)
Q Consensus       424 ~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~l~l~~n-~~~~~~p~  466 (470)
                      ++|++|++++|++. +..+..+..++.|+.+++.+| .+++..|.
T Consensus       237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             CCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            99999999999998 678888888888998888844 44444443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.8e-26  Score=207.12  Aligned_cols=268  Identities=19%  Similarity=0.195  Sum_probs=200.7

Q ss_pred             CcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEcc
Q 046000          161 LEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLS  240 (470)
Q Consensus       161 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  240 (470)
                      -+.++.++.++...   +....+++++|+++++.+. .++...+..+++|++|++++|.+.+..+..|..+++|+.|+++
T Consensus        13 ~~~~~c~~~~l~~i---p~~~~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   88 (285)
T 1ozn_A           13 KVTTSCPQQGLQAV---PVGIPAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS   88 (285)
T ss_dssp             SCEEECCSSCCSSC---CTTCCTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CeEEEcCcCCcccC---CcCCCCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence            36778888777743   2334678999999999998 5555555668999999999999987778899999999999999


Q ss_pred             ccc-cccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCC
Q 046000          241 KNN-FSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGH  319 (470)
Q Consensus       241 ~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  319 (470)
                      +|. +....+..+..+++|++|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ 
T Consensus        89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-  167 (285)
T 1ozn_A           89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-  167 (285)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-
T ss_pred             CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-
Confidence            997 777778889999999999999999998778888999999999999999987776778888889999888887752 


Q ss_pred             cchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhc
Q 046000          320 IPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFR  398 (470)
Q Consensus       320 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~  398 (470)
                      ++                        +..+..+++|+.|++++|.+.+..+..+ .+++|++|++++|.+.+..+..+..
T Consensus       168 ~~------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  223 (285)
T 1ozn_A          168 VP------------------------ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP  223 (285)
T ss_dssp             EC------------------------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT
T ss_pred             cC------------------------HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHccc
Confidence            21                        2234456677777777777766644444 5677888888888877666666777


Q ss_pred             CCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhcc--CCCCCeEEccCc
Q 046000          399 SSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQ--LRRLGVMDLSHN  458 (470)
Q Consensus       399 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~--l~~L~~l~l~~n  458 (470)
                      +++|+.|++++|++....+. ......++.+..+.+.+....|..+.+  +..++..++.+|
T Consensus       224 l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C  284 (285)
T 1ozn_A          224 LRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC  284 (285)
T ss_dssp             CTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred             CcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence            88888888888887632211 111123444556677777677766654  345555555555

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=1.7e-25  Score=213.60  Aligned_cols=246  Identities=17%  Similarity=0.141  Sum_probs=181.7

Q ss_pred             CCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEc
Q 046000          160 KLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHL  239 (470)
Q Consensus       160 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  239 (470)
                      ..+.++..+.++.... .  .-.++++.|++++|.+. .++...+..+++|++|++++|.+....+..|.++++|+.|++
T Consensus        44 ~~~~v~c~~~~l~~iP-~--~~~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           44 QFSKVICVRKNLREVP-D--GISTNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             TSCEEECCSCCCSSCC-S--CCCTTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred             CCCEEEeCCCCcCcCC-C--CCCCCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence            3567777777777432 2  23468999999999998 455455566899999999999999888889999999999999


Q ss_pred             cccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcccc-ccccccchhhcCCCCccEEECCCCcccC
Q 046000          240 SKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNN-KFSGKIEDGLLKSNQLKELDMSNNMLSG  318 (470)
Q Consensus       240 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~  318 (470)
                      ++|.+....+..+..+++|++|++++|.+.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.+. 
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-  198 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-  198 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence            999999888888999999999999999998877778999999999999985 455445557888999999999999887 


Q ss_pred             CcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchh
Q 046000          319 HIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALF  397 (470)
Q Consensus       319 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~  397 (470)
                      .+|. +..+.. ++.|++++|.+++..+..+..+++|+.|++++|.+..++...+ .+++|++|++++|+++...+..+.
T Consensus       199 ~~~~-~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  276 (440)
T 3zyj_A          199 EIPN-LTPLIK-LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT  276 (440)
T ss_dssp             SCCC-CTTCSS-CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred             cccc-cCCCcc-cCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence            4443 233333 6666666666655555556666666666666666655555444 456666666666666555555555


Q ss_pred             cCCCccEEEcCCccc
Q 046000          398 RSSKLMTLDLRDNGF  412 (470)
Q Consensus       398 ~~~~L~~L~l~~n~l  412 (470)
                      .+++|+.|++++|++
T Consensus       277 ~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          277 PLHHLERIHLHHNPW  291 (440)
T ss_dssp             SCTTCCEEECCSSCE
T ss_pred             cccCCCEEEcCCCCc
Confidence            556666666666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=2.3e-25  Score=213.34  Aligned_cols=247  Identities=21%  Similarity=0.162  Sum_probs=188.3

Q ss_pred             CCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEc
Q 046000          160 KLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHL  239 (470)
Q Consensus       160 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  239 (470)
                      ....++.++.++.... .  .-.++++.|++++|.+.+ ++...+..+++|++|++++|.+.+..+..|.++++|+.|++
T Consensus        55 ~~~~v~c~~~~l~~iP-~--~~~~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVP-Q--GIPSNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SSCEEECCSSCCSSCC-S--CCCTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEECCCCcCccC-C--CCCCCccEEECcCCcCce-ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence            3567777777776432 2  234689999999999984 44444556999999999999999888889999999999999


Q ss_pred             cccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcccc-ccccccchhhcCCCCccEEECCCCcccC
Q 046000          240 SKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNN-KFSGKIEDGLLKSNQLKELDMSNNMLSG  318 (470)
Q Consensus       240 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~  318 (470)
                      ++|.+....+..+..+++|++|++++|.+.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.+. 
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-  209 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-  209 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-
Confidence            999999888888999999999999999998877778999999999999985 555445556888999999999999887 


Q ss_pred             CcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchh
Q 046000          319 HIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALF  397 (470)
Q Consensus       319 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~  397 (470)
                      .++. +..+.. ++.|++++|.+.+..+..+..+++|+.|++++|.+..++...+ .+++|++|++++|+++...+..+.
T Consensus       210 ~~~~-~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  287 (452)
T 3zyi_A          210 DMPN-LTPLVG-LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT  287 (452)
T ss_dssp             SCCC-CTTCTT-CCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred             cccc-cccccc-ccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhc
Confidence            3432 333333 7777777777766666666677777777777777666655544 566777777777776655555666


Q ss_pred             cCCCccEEEcCCccce
Q 046000          398 RSSKLMTLDLRDNGFS  413 (470)
Q Consensus       398 ~~~~L~~L~l~~n~l~  413 (470)
                      .+++|+.|++++|++.
T Consensus       288 ~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          288 PLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TCTTCCEEECCSSCEE
T ss_pred             cccCCCEEEccCCCcC
Confidence            6667777777776653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=2.9e-25  Score=202.71  Aligned_cols=235  Identities=16%  Similarity=0.144  Sum_probs=187.5

Q ss_pred             CCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEE
Q 046000          182 HDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFL  261 (470)
Q Consensus       182 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  261 (470)
                      ..+++.|+++++.+. .+|..++. +++|++|++++|.+. .+|..+..+++|+.|++++|.+. ..+..+..+++|++|
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             ccceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            467999999999998 88888776 999999999999998 78888999999999999999998 667789999999999


Q ss_pred             ecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcc
Q 046000          262 DRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFL  341 (470)
Q Consensus       262 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~  341 (470)
                      ++++|......+..+..      .         .....+..+++|++|++++|.+. .+|..+..+.. +++|++++|.+
T Consensus       156 ~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~-L~~L~L~~N~l  218 (328)
T 4fcg_A          156 SIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQN-LKSLKIRNSPL  218 (328)
T ss_dssp             EEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTT-CCEEEEESSCC
T ss_pred             ECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCC-CCEEEccCCCC
Confidence            99998776655544332      0         01122445666666666666666 56666555554 77777777776


Q ss_pred             cCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhh
Q 046000          342 KGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQI  420 (470)
Q Consensus       342 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~  420 (470)
                      . .+|..+..+++|+.|++++|.+....+..+ .+++|++|++++|.+.+..|..+..+++|+.|++++|++.+.+|+.+
T Consensus       219 ~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l  297 (328)
T 4fcg_A          219 S-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI  297 (328)
T ss_dssp             C-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred             C-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence            6 455567788888888888887665554444 78899999999998888888889999999999999999988999999


Q ss_pred             hcCCCCcEEEccCcccCc
Q 046000          421 NESSNLRVLLLRGNYLEG  438 (470)
Q Consensus       421 ~~~~~L~~L~l~~n~i~~  438 (470)
                      ..+++|+.+++..+.+..
T Consensus       298 ~~L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          298 AQLPANCIILVPPHLQAQ  315 (328)
T ss_dssp             GGSCTTCEEECCGGGSCC
T ss_pred             hhccCceEEeCCHHHHHH
Confidence            999999999998886653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=2.3e-24  Score=211.44  Aligned_cols=269  Identities=24%  Similarity=0.273  Sum_probs=199.6

Q ss_pred             CcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCcee
Q 046000          134 HDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYI  213 (470)
Q Consensus       134 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  213 (470)
                      ..++.|+++++.++ .+|..+.   ++|+.|++++|.++....    .+++|++|++++|.+. .+|.    .+++|++|
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L  106 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT-SLPV----LPPGLLEL  106 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCS-CCCC----CCTTCCEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCC-cCCC----CCCCCCEE
Confidence            35889999999988 7776543   789999999998885333    5688999999999887 6665    36889999


Q ss_pred             eccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccc
Q 046000          214 DMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFS  293 (470)
Q Consensus       214 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  293 (470)
                      ++++|.+.+ ++.   .+++|+.|++++|.+.....    .+++|++|++++|.+....    ..+++|+.|++++|.+.
T Consensus       107 ~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~  174 (622)
T 3g06_A          107 SIFSNPLTH-LPA---LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLT  174 (622)
T ss_dssp             EECSCCCCC-CCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS
T ss_pred             ECcCCcCCC-CCC---CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCcC----CccCCCCEEECCCCCCC
Confidence            999998874 343   56889999999988875332    2478899999988876532    13577888888888887


Q ss_pred             cccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc
Q 046000          294 GKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF  373 (470)
Q Consensus       294 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  373 (470)
                      ...    ..+++|+.|++++|.+. .++..    ...++.|++++|.++ .+|.   .+++|+.|++++|.++.++   .
T Consensus       175 ~l~----~~~~~L~~L~Ls~N~l~-~l~~~----~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~lp---~  238 (622)
T 3g06_A          175 SLP----MLPSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSLP---V  238 (622)
T ss_dssp             CCC----CCCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCCC---C
T ss_pred             CCc----ccCCCCcEEECCCCCCC-CCCCc----cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcCC---C
Confidence            533    45678888888888887 34432    234888888888876 3443   2467888888888887766   2


Q ss_pred             ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCC
Q 046000          374 SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLR  448 (470)
Q Consensus       374 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~  448 (470)
                      .+++|++|++++|.++. +|.   .+++|+.|++++|++. .+|..+..+++|+.|++++|++++..+..+..++
T Consensus       239 ~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          239 LPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             CCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            35788888888888873 333   5578888888888887 5677788888888888888888877776665543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=5.1e-26  Score=207.21  Aligned_cols=243  Identities=20%  Similarity=0.168  Sum_probs=201.4

Q ss_pred             cCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcc
Q 046000          209 KLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLD  288 (470)
Q Consensus       209 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  288 (470)
                      .++..+++.+.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|.+.....  +..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            34555666666654444556677899999999999998877889999999999999999876443  8899999999999


Q ss_pred             ccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCc
Q 046000          289 NNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGF  368 (470)
Q Consensus       289 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  368 (470)
                      +|.+.+..     ..++|++|++++|.+.+..+..    ...++.|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus        89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~----~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC----CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred             CCcccccc-----CCCCcCEEECCCCccCCcCccc----cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence            99987443     3489999999999998544433    23499999999999977777888999999999999999987


Q ss_pred             ccccc--ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhcc
Q 046000          369 MTSSF--SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQ  446 (470)
Q Consensus       369 ~~~~~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  446 (470)
                      +...+  .+++|++|++++|.+++..  ....+++|+.|++++|++.+. +..+..+++|++|++++|+++ .+|..+..
T Consensus       160 ~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~  235 (317)
T 3o53_A          160 NFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRF  235 (317)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred             cHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhc
Confidence            66554  5799999999999998652  233589999999999999965 445899999999999999999 57888999


Q ss_pred             CCCCCeEEccCcccc-cccCC
Q 046000          447 LRRLGVMDLSHNRIN-GSIPS  466 (470)
Q Consensus       447 l~~L~~l~l~~n~~~-~~~p~  466 (470)
                      +++|+.|++++|+++ +.+|.
T Consensus       236 l~~L~~L~l~~N~~~~~~~~~  256 (317)
T 3o53_A          236 SQNLEHFDLRGNGFHCGTLRD  256 (317)
T ss_dssp             CTTCCEEECTTCCCBHHHHHH
T ss_pred             CCCCCEEEccCCCccCcCHHH
Confidence            999999999999998 44443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=3.9e-24  Score=209.83  Aligned_cols=270  Identities=26%  Similarity=0.256  Sum_probs=210.3

Q ss_pred             ccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCC
Q 046000          103 HSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKH  182 (470)
Q Consensus       103 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~  182 (470)
                      ..+++.|+++++.+..++       ..+.  ++|++|++++|.++ .+|.    .+++|++|++++|.++....    .+
T Consensus        39 ~~~l~~L~ls~n~L~~lp-------~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l  100 (622)
T 3g06_A           39 NNGNAVLNVGESGLTTLP-------DCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LP  100 (622)
T ss_dssp             HHCCCEEECCSSCCSCCC-------SCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CC
T ss_pred             CCCCcEEEecCCCcCccC-------hhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CC
Confidence            346889999988876332       2221  67999999999988 6776    57889999999998875333    67


Q ss_pred             CcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEe
Q 046000          183 DFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLD  262 (470)
Q Consensus       183 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  262 (470)
                      ++|++|++++|.+. .+|.    .+++|++|++++|.+.. +|..   +++|+.|++++|.+.... .   .+++|+.|+
T Consensus       101 ~~L~~L~Ls~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~  167 (622)
T 3g06_A          101 PGLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLP-A---LPSELCKLW  167 (622)
T ss_dssp             TTCCEEEECSCCCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCC-C---CCTTCCEEE
T ss_pred             CCCCEEECcCCcCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcC-C---ccCCCCEEE
Confidence            88999999999887 5555    36789999999998874 4443   488999999999887532 2   357889999


Q ss_pred             cCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCccc
Q 046000          263 RSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLK  342 (470)
Q Consensus       263 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~  342 (470)
                      +++|.+....    ..+++|+.|++++|.+.+...    ..++|+.|++++|.+. .++..    ...++.|++++|.++
T Consensus       168 L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~-~l~~~----~~~L~~L~Ls~N~L~  234 (622)
T 3g06_A          168 AYNNQLTSLP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLT  234 (622)
T ss_dssp             CCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS
T ss_pred             CCCCCCCCCc----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccc-ccCCC----CCCCCEEEccCCccC
Confidence            9999887643    457889999999998875332    3578999999999887 55542    244899999999887


Q ss_pred             CCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhc
Q 046000          343 GNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINE  422 (470)
Q Consensus       343 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~  422 (470)
                      + +|   ..+++|+.|++++|.++.++.   .+++|++|++++|+++ .+|..+..+++|+.|++++|++.+..+..+..
T Consensus       235 ~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~  306 (622)
T 3g06_A          235 S-LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  306 (622)
T ss_dssp             C-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred             c-CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence            4 55   456889999999999988776   4689999999999998 66788889999999999999998877776655


Q ss_pred             CC
Q 046000          423 SS  424 (470)
Q Consensus       423 ~~  424 (470)
                      ++
T Consensus       307 L~  308 (622)
T 3g06_A          307 IT  308 (622)
T ss_dssp             HH
T ss_pred             cc
Confidence            43

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=3.2e-25  Score=213.31  Aligned_cols=236  Identities=19%  Similarity=0.186  Sum_probs=168.0

Q ss_pred             hccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEE
Q 046000          207 LQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLY  286 (470)
Q Consensus       207 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~  286 (470)
                      +++|++|++++|.+.+..+..|..+++|+.|++++|.+....+  +..+++|++|++++|.+....     ..++|+.|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence            3466667777766665555666777777777777776654443  666677777777777654322     236777777


Q ss_pred             ccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhh-ccCCCeEEEccCccc
Q 046000          287 LDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLL-NHGSLQLLSVSENCL  365 (470)
Q Consensus       287 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l  365 (470)
                      +++|.+.+..+.   .+++|+.|++++|.+.+..+..+..+.. ++.|++++|.+++..|..+. .+++|+.|++++|.+
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSS-EEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCC-CCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            777777654433   3567788888888777655666655555 77888888877766666665 678888888888888


Q ss_pred             cCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccC-cccchhh
Q 046000          366 SGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLE-GPISNQF  444 (470)
Q Consensus       366 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~  444 (470)
                      ++.+... .+++|++|++++|.+++..+ .+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|++. +..|..+
T Consensus       182 ~~~~~~~-~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~  258 (487)
T 3oja_A          182 YDVKGQV-VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (487)
T ss_dssp             CEEECCC-CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred             ccccccc-cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence            7765433 47888888888888885444 47788888888888888884 5666788888888888888887 5667777


Q ss_pred             ccCCCCCeEEcc
Q 046000          445 CQLRRLGVMDLS  456 (470)
Q Consensus       445 ~~l~~L~~l~l~  456 (470)
                      ..++.|+.+++.
T Consensus       259 ~~l~~L~~l~~~  270 (487)
T 3oja_A          259 SKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             HhCCCCcEEecc
Confidence            777777777775

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=2.5e-26  Score=208.68  Aligned_cols=248  Identities=17%  Similarity=0.102  Sum_probs=176.0

Q ss_pred             CCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccC-CCCchhhc-------CCCCccEEEccccccccccCccc
Q 046000          181 KHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFE-GNLPSSIG-------DMKTLTFLHLSKNNFSGELSTLF  252 (470)
Q Consensus       181 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~~~  252 (470)
                      ..++|+.+++++|.+  .+|..+..   .|+.|++++|.+. ...+..+.       .+++|++|++++|.+....+..+
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             cCCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            456788899999988  67766654   3888899998884 34555444       78999999999999987766655


Q ss_pred             --cCCCcccEEecCCCcCCCcchhhhcCc-----ccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHH
Q 046000          253 --TGCVSLWFLDRSHNNFHDQIFPKYMNL-----TRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIA  325 (470)
Q Consensus       253 --~~l~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  325 (470)
                        ..+++|++|++++|.+... +..+..+     ++|++|++++|.+.+..+..+..+++|++|++++|++.+..+.   
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---  191 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL---  191 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH---
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH---
Confidence              7889999999999988776 4555555     8888888888888877777788888888888888876532111   


Q ss_pred             hhhccccEEEcCCCcccCCCchh--hhccCCCeEEEccCccccCccc---ccc-ccCcccEEEccCCcccccCc-cchhc
Q 046000          326 NFSSYLEVLLMSKNFLKGNIPMQ--LLNHGSLQLLSVSENCLSGFMT---SSF-SLSSLVHLYVQRNDLSGTIP-NALFR  398 (470)
Q Consensus       326 ~~~~~l~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~---~~~-~~~~L~~L~l~~~~l~~~~~-~~l~~  398 (470)
                                          +..  +..+++|++|++++|.+..++.   ..+ .+++|++|++++|++.+..+ ..+..
T Consensus       192 --------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  251 (312)
T 1wwl_A          192 --------------------ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW  251 (312)
T ss_dssp             --------------------HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred             --------------------HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence                                111  1345667777777776664332   221 45677777777777765543 34455


Q ss_pred             CCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCccccc
Q 046000          399 SSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRING  462 (470)
Q Consensus       399 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~  462 (470)
                      +++|+.|++++|+++ .+|..+.  ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus       252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            677777777777777 4555444  7777888888877754 54 7777788888888887774

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=2.1e-25  Score=202.61  Aligned_cols=251  Identities=20%  Similarity=0.175  Sum_probs=177.9

Q ss_pred             hcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCccc-CCCCcchh------hhhccCceeeccCCccCCCCchhh
Q 046000          156 QNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFT-GKLPQDKG------IILQKLLYIDMANNRFEGNLPSSI  228 (470)
Q Consensus       156 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~l  228 (470)
                      ...++|+.+++++|.+  ..+..+..  .++.|+++++.+. ..++....      ..+++|++|++++|.+.+..|..+
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             ccCCCceeEeeccccc--ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            3456788888888887  22332222  3899999999884 34554433      137899999999999998788776


Q ss_pred             --cCCCCccEEEccccccccccCccccCC-----CcccEEecCCCcCCCcchhhhcCcccccEEEccccccccc--cchh
Q 046000          229 --GDMKTLTFLHLSKNNFSGELSTLFTGC-----VSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGK--IEDG  299 (470)
Q Consensus       229 --~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~--~~~~  299 (470)
                        ..+++|+.|++++|.+... +..+..+     ++|++|++++|.+....+..++.+++|+.|++++|++.+.  .+..
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence              8999999999999999876 6666665     8999999999999988888999999999999999987643  2223


Q ss_pred             h--cCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccc-ccc-cc
Q 046000          300 L--LKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMT-SSF-SL  375 (470)
Q Consensus       300 ~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~-~~  375 (470)
                      +  ..+++|++|++++|.+. .++....                     ..+..+++|+.|++++|.+.+.++ ..+ .+
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~-~~~~~~~---------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGME-TPSGVCS---------------------ALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCC-CHHHHHH---------------------HHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             HHhccCCCCCEEECCCCcCc-chHHHHH---------------------HHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            3  77899999999999876 2222111                     112334566666666666655442 222 45


Q ss_pred             CcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc
Q 046000          376 SSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG  438 (470)
Q Consensus       376 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~  438 (470)
                      ++|++|++++|+++ .+|..+.  ++|+.|++++|++++. |. +..+++|++|++++|++++
T Consensus       253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            67777777777776 4444443  6777777777777654 44 6677777777777777764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=1.5e-24  Score=208.76  Aligned_cols=222  Identities=21%  Similarity=0.155  Sum_probs=190.1

Q ss_pred             CCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEE
Q 046000          230 DMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKEL  309 (470)
Q Consensus       230 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L  309 (470)
                      .+++|+.|++++|.+....+..+..+++|++|++++|.+....+  +..+++|+.|++++|.+.+..+     .++|+.|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence            34589999999999998888899999999999999999876543  8899999999999999885432     3899999


Q ss_pred             ECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc--ccCcccEEEccCCc
Q 046000          310 DMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF--SLSSLVHLYVQRND  387 (470)
Q Consensus       310 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~--~~~~L~~L~l~~~~  387 (470)
                      ++++|.+.+..+..   + +.++.|++++|.+++..|..+..+++|+.|++++|.+.+.++..+  .+++|++|++++|.
T Consensus       105 ~L~~N~l~~~~~~~---l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          105 HAANNNISRVSCSR---G-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             ECCSSCCCCEEECC---C-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             ECcCCcCCCCCccc---c-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence            99999998555442   2 349999999999998888889999999999999999998766554  58999999999999


Q ss_pred             ccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccc-cccCC
Q 046000          388 LSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRIN-GSIPS  466 (470)
Q Consensus       388 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~-~~~p~  466 (470)
                      +++..+  ...+++|+.|++++|.+++..+ .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|+++ +.+|.
T Consensus       181 l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~  256 (487)
T 3oja_A          181 IYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD  256 (487)
T ss_dssp             CCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred             cccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence            986633  3358999999999999996544 48999999999999999994 7888999999999999999998 44443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=5.4e-23  Score=183.59  Aligned_cols=220  Identities=20%  Similarity=0.199  Sum_probs=132.5

Q ss_pred             eeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcccccc
Q 046000          213 IDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKF  292 (470)
Q Consensus       213 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  292 (470)
                      .+..+..+. .+|..+.  ++++.|++++|.+....+..+..+++|++|++++|.+.......+..+++|++|++++|.+
T Consensus        12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            344444444 3444432  5688888888888877777788888888888888888776666777788888888888887


Q ss_pred             ccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCC-CchhhhccCCCeEEEccCccccCcccc
Q 046000          293 SGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGN-IPMQLLNHGSLQLLSVSENCLSGFMTS  371 (470)
Q Consensus       293 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~  371 (470)
                      .+..+..+..+++|++|++++|.+.+..+..+..+.. +++|++++|.+.+. +|..+..+++|++|++++|.+++++..
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~  167 (276)
T 2z62_A           89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT-LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (276)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT-CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             CccChhhhcCCccccEEECCCCCccccCchhcccCCC-CCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence            7666667777788888888887776433333333333 55666666655432 355555555555555555555554433


Q ss_pred             cc-ccCccc----EEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccC
Q 046000          372 SF-SLSSLV----HLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLE  437 (470)
Q Consensus       372 ~~-~~~~L~----~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~  437 (470)
                      .+ .+++|+    +|++++|.+.+..+..+. ..+|+.|++++|++++..+..+..+++|++|++++|++.
T Consensus       168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             GGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             HhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            33 233333    455555555533333222 234555555555555444444455555555555555554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=1e-22  Score=181.70  Aligned_cols=205  Identities=19%  Similarity=0.173  Sum_probs=142.9

Q ss_pred             cCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcc
Q 046000          209 KLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLD  288 (470)
Q Consensus       209 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  288 (470)
                      .+++|++++|.+.+..+..|..+++|+.|++++|.+....+..+..+++|++|++++|.+.......+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            56666666666654444456666666666666666665555556666666666666666665555556666666666666


Q ss_pred             ccccccccchhhcCCCCccEEECCCCcccC-CcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCe----EEEccCc
Q 046000          289 NNKFSGKIEDGLLKSNQLKELDMSNNMLSG-HIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQ----LLSVSEN  363 (470)
Q Consensus       289 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~  363 (470)
                      +|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+.. ++.|++++|.+++..+..+..++.|+    .|++++|
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN-LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT-CCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCC-CCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            666665444456666777777777777653 24566665555 77777777777655555565555555    8999999


Q ss_pred             cccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCcccee
Q 046000          364 CLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSG  414 (470)
Q Consensus       364 ~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~  414 (470)
                      .+..++...+...+|++|++++|++++..+..+..+++|+.|++++|++..
T Consensus       188 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          188 PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             cccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            999888877777799999999999987766777889999999999999874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=7e-24  Score=198.91  Aligned_cols=241  Identities=20%  Similarity=0.182  Sum_probs=149.0

Q ss_pred             CchhhcCCCCccEEEccccccccccC----ccccCCCcccEEecCCCcCCC---cchh-------hhcCcccccEEEccc
Q 046000          224 LPSSIGDMKTLTFLHLSKNNFSGELS----TLFTGCVSLWFLDRSHNNFHD---QIFP-------KYMNLTRLWFLYLDN  289 (470)
Q Consensus       224 ~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~---~~~~-------~~~~~~~L~~l~l~~  289 (470)
                      ++..+..+++|+.|++++|.+....+    ..+..+++|++|++++|.+..   ..+.       .+..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            33444455555555555555543322    224455566666665543321   1121       234566677777777


Q ss_pred             ccccc----ccchhhcCCCCccEEECCCCcccCCcchhHHhhh------------ccccEEEcCCCccc-CCCc---hhh
Q 046000          290 NKFSG----KIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFS------------SYLEVLLMSKNFLK-GNIP---MQL  349 (470)
Q Consensus       290 ~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~------------~~l~~L~l~~~~~~-~~~~---~~~  349 (470)
                      |.+.+    ..+..+..+++|+.|++++|.+.+..+..+....            +.++.|++++|.++ ..++   ..+
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            66664    2344556677777777777776533333333321            33777777777765 2333   355


Q ss_pred             hccCCCeEEEccCccccCc-----cc-cccccCcccEEEccCCccc----ccCccchhcCCCccEEEcCCccceee----
Q 046000          350 LNHGSLQLLSVSENCLSGF-----MT-SSFSLSSLVHLYVQRNDLS----GTIPNALFRSSKLMTLDLRDNGFSGI----  415 (470)
Q Consensus       350 ~~~~~L~~L~l~~~~l~~~-----~~-~~~~~~~L~~L~l~~~~l~----~~~~~~l~~~~~L~~L~l~~n~l~~~----  415 (470)
                      ..+++|++|++++|.+.+.     .+ ....+++|++|++++|.++    ..++..+..+++|+.|++++|++.+.    
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  263 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  263 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence            6777888888888877632     12 2236778888888888875    34566677778888888888887654    


Q ss_pred             cchhhhc--CCCCcEEEccCcccCc----ccchhh-ccCCCCCeEEccCccccccc
Q 046000          416 ISDQINE--SSNLRVLLLRGNYLEG----PISNQF-CQLRRLGVMDLSHNRINGSI  464 (470)
Q Consensus       416 ~~~~~~~--~~~L~~L~l~~n~i~~----~~~~~~-~~l~~L~~l~l~~n~~~~~~  464 (470)
                      ++..+..  +++|++|++++|++++    .++..+ .++++|+.|++++|++++..
T Consensus       264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            3455533  7888888888888876    466666 55788888888888887554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=1.3e-23  Score=195.11  Aligned_cols=253  Identities=17%  Similarity=0.101  Sum_probs=166.8

Q ss_pred             EeccCCcccCCCCcchhhhhccCceeeccCCccCCCCc----hhhcCCC-CccEEEccccccccccCccccCC-----Cc
Q 046000          188 LDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLP----SSIGDMK-TLTFLHLSKNNFSGELSTLFTGC-----VS  257 (470)
Q Consensus       188 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~  257 (470)
                      ..++.+.+.+.+|.. ....+.|++|++++|.+.+..+    ..+..++ +|+.|++++|.+....+..+..+     ++
T Consensus         3 ~~ls~n~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEF-TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHHH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHHH-HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            456677666444433 2324458888888888876655    6677787 78888888888876655555543     78


Q ss_pred             ccEEecCCCcCCCcchhhhc----Cc-ccccEEEccccccccccchhh----cC-CCCccEEECCCCcccCCcchhH---
Q 046000          258 LWFLDRSHNNFHDQIFPKYM----NL-TRLWFLYLDNNKFSGKIEDGL----LK-SNQLKELDMSNNMLSGHIPHWI---  324 (470)
Q Consensus       258 L~~L~l~~~~~~~~~~~~~~----~~-~~L~~l~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~~~~~---  324 (470)
                      |++|++++|.+.+.....+.    .+ ++|+.|++++|.+.+.....+    .. .++|++|++++|.+.+.....+   
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            88888888888765555433    33 788888888888775554433    23 3588888888888775444433   


Q ss_pred             -HhhhccccEEEcCCCcccCCCchhhh----cc-CCCeEEEccCccccCccccc-----cc-cCcccEEEccCCcccccC
Q 046000          325 -ANFSSYLEVLLMSKNFLKGNIPMQLL----NH-GSLQLLSVSENCLSGFMTSS-----FS-LSSLVHLYVQRNDLSGTI  392 (470)
Q Consensus       325 -~~~~~~l~~L~l~~~~~~~~~~~~~~----~~-~~L~~L~l~~~~l~~~~~~~-----~~-~~~L~~L~l~~~~l~~~~  392 (470)
                       ......+++|++++|.+++..+..+.    .+ ++|++|++++|.+.+.+...     .. .++|++|++++|.+.+..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence             33333588888888887755554333    34 57888888888877633322     12 357888888888877554


Q ss_pred             c----cchhcCCCccEEEcCCccceee-------cchhhhcCCCCcEEEccCcccCcccc
Q 046000          393 P----NALFRSSKLMTLDLRDNGFSGI-------ISDQINESSNLRVLLLRGNYLEGPIS  441 (470)
Q Consensus       393 ~----~~l~~~~~L~~L~l~~n~l~~~-------~~~~~~~~~~L~~L~l~~n~i~~~~~  441 (470)
                      +    ..+..+++|+.|++++|.+...       ++..+..+++|++|++++|++....+
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence            4    2345567788888888874322       22345566778888888888775433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=6.1e-23  Score=182.52  Aligned_cols=223  Identities=16%  Similarity=0.202  Sum_probs=124.0

Q ss_pred             ccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEc
Q 046000          208 QKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYL  287 (470)
Q Consensus       208 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l  287 (470)
                      .++..+.+.++.+.+.  .....+++|+.|+++++.+...  ..+..+++|++|++++|.+.+.  ..+..+++|++|++
T Consensus        19 ~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L   92 (272)
T 3rfs_A           19 AETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL   92 (272)
T ss_dssp             HHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred             HHHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence            3555566666655432  2355677888888888876632  2366677788888887777652  35666777777777


Q ss_pred             cccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccC
Q 046000          288 DNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSG  367 (470)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  367 (470)
                      ++|.+.+..+..+..+++|++|++++|.+.+..+                         ..+..+++|++|++++|.+..
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------------------~~~~~l~~L~~L~L~~n~l~~  147 (272)
T 3rfs_A           93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD-------------------------GVFDKLTNLTYLNLAHNQLQS  147 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-------------------------TTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCccCccChhHhcCCcCCCEEECCCCcCCccCH-------------------------HHhccCCCCCEEECCCCccCc
Confidence            7777665555556666667777776666653333                         333444445555555554444


Q ss_pred             cccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhcc
Q 046000          368 FMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQ  446 (470)
Q Consensus       368 ~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  446 (470)
                      ++...+ .+++|++|++++|++++..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|++.+       .
T Consensus       148 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~  220 (272)
T 3rfs_A          148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------T  220 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------C
T ss_pred             cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------c
Confidence            444333 34455555555555544444444445555555555555554444444455555555555554432       2


Q ss_pred             CCCCCeEEccCcccccccCCCc
Q 046000          447 LRRLGVMDLSHNRINGSIPSCF  468 (470)
Q Consensus       447 l~~L~~l~l~~n~~~~~~p~~~  468 (470)
                      ++.|+.++++.|.+++.+|..+
T Consensus       221 ~~~l~~l~~~~n~~~g~ip~~~  242 (272)
T 3rfs_A          221 CPGIRYLSEWINKHSGVVRNSA  242 (272)
T ss_dssp             TTTTHHHHHHHHHTGGGBBCTT
T ss_pred             CcHHHHHHHHHHhCCCcccCcc
Confidence            3344455555555555555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=4.3e-22  Score=176.92  Aligned_cols=202  Identities=22%  Similarity=0.224  Sum_probs=140.2

Q ss_pred             CccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECC
Q 046000          233 TLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMS  312 (470)
Q Consensus       233 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~  312 (470)
                      ..+.++++++.++... ..+  .+++++|++++|.+.......+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~ip-~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIP-SNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCccC-CCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            4677888888777433 222  2578888888888877666677788888888888888876656666778888888888


Q ss_pred             CCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCccccc
Q 046000          313 NNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGT  391 (470)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~  391 (470)
                      +|.+.+..+..+..+.. +++|++++|.+++..+..+..+++|++|++++|.+..++...+ .+++|++|++++|.+...
T Consensus        94 ~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVN-LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV  172 (270)
T ss_dssp             SSCCCCCCTTTTTTCSS-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcCCcCCHhHcccccC-CCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence            88877433333344443 7777777777765555666677777777777777776666544 567777777777777655


Q ss_pred             CccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc
Q 046000          392 IPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG  438 (470)
Q Consensus       392 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~  438 (470)
                      .+..+..+++|+.|++++|++....+..+..+++|+.|++++|++..
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            55566667777777777777765555556667777777777777653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=3.4e-23  Score=190.72  Aligned_cols=254  Identities=17%  Similarity=0.166  Sum_probs=129.2

Q ss_pred             cccEEeccCCcccCCCCcchhhhh--ccCceeeccCCccCCCCchhhcCCCCccEEEccccccccc-cCccccCCCcccE
Q 046000          184 FLHHLDVSSNNFTGKLPQDKGIIL--QKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGE-LSTLFTGCVSLWF  260 (470)
Q Consensus       184 ~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~  260 (470)
                      .++.++++++.+.    ......+  +.++.++++++.+.+..+. +..+++|+.|++++|.+... .+..+..+++|++
T Consensus        48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            3677777776554    2222224  6777777777777654443 44567777777777766543 4455566667777


Q ss_pred             EecCCCcCCCcchhhhcCcccccEEEcccc-ccccc-cchhhcCCCCccEEECCCC-cccCC-cchhHHhhhccccEEEc
Q 046000          261 LDRSHNNFHDQIFPKYMNLTRLWFLYLDNN-KFSGK-IEDGLLKSNQLKELDMSNN-MLSGH-IPHWIANFSSYLEVLLM  336 (470)
Q Consensus       261 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~~l~~L~l  336 (470)
                      |++++|.+.+..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+.+. ++..+..++..+++|++
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            777766665555555556666666666666 34431 3333455566666666666 55422 23333333312445555


Q ss_pred             CCCc--cc-CCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCc-ccccCccchhcCCCccEEEcCCcc-
Q 046000          337 SKNF--LK-GNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRND-LSGTIPNALFRSSKLMTLDLRDNG-  411 (470)
Q Consensus       337 ~~~~--~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~l~~n~-  411 (470)
                      ++|.  ++ +.++..+..                       +++|++|++++|. +++..+..+..+++|+.|++++|. 
T Consensus       203 ~~~~~~~~~~~l~~~~~~-----------------------~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~  259 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVRR-----------------------CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD  259 (336)
T ss_dssp             CSCGGGSCHHHHHHHHHH-----------------------CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred             CCCcccCCHHHHHHHHhh-----------------------CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence            4442  22 122333334                       4555555555555 343444444555555555555553 


Q ss_pred             ceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccCCCc
Q 046000          412 FSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCF  468 (470)
Q Consensus       412 l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~  468 (470)
                      +.......+..+++|++|++++| +.......+.  ..++.|++++|++++..|..+
T Consensus       260 ~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          260 IIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTI  313 (336)
T ss_dssp             CCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSC
T ss_pred             CCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcc
Confidence            22111123445555555555555 3322222221  123334455555555555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=8.9e-22  Score=176.21  Aligned_cols=203  Identities=25%  Similarity=0.181  Sum_probs=154.4

Q ss_pred             hcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCcc
Q 046000          228 IGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLK  307 (470)
Q Consensus       228 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~  307 (470)
                      +..+++++.++++++.+.......   .++++.|++++|.+.......+..+++|+.|++++|.+.+....  ..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            567788999999998887544332   26788999999988877777888889999999999888754332  6778888


Q ss_pred             EEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCC
Q 046000          308 ELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRN  386 (470)
Q Consensus       308 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~  386 (470)
                      .|++++|.+. .+|..+..+.. ++.|++++|.+++..+..+..+++|+.|++++|.+..++...+ .+++|++|++++|
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~-L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPA-LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTT-CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCcCC-cCchhhccCCC-CCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            8888888887 66666655555 7888888888776666677778888888888888877777665 6778888888888


Q ss_pred             cccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc
Q 046000          387 DLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG  438 (470)
Q Consensus       387 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~  438 (470)
                      +++...+..+..+++|+.|++++|++. .+|..+..+++|+.+++++|++..
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            887665566677788888888888877 456666667778888888887753

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=1.6e-21  Score=173.14  Aligned_cols=201  Identities=22%  Similarity=0.230  Sum_probs=164.2

Q ss_pred             cCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcc
Q 046000          209 KLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLD  288 (470)
Q Consensus       209 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  288 (470)
                      ..+.++++++.+. .+|..+.  ++++.|++++|.+....+..+..+++|++|++++|.+.......|..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            5678888888887 4555443  678999999998887777788889999999999998887666677888999999999


Q ss_pred             ccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCc
Q 046000          289 NNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGF  368 (470)
Q Consensus       289 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  368 (470)
                      +|.+.+..+..+..+++|+.|++++|.+.+..+..+..+.. ++.|++++|.+.+..+..+..+++|+.|++++|.+..+
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK-LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV  172 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC-CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence            99888776777788899999999999888555555555555 99999999988866666678889999999999998888


Q ss_pred             ccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccce
Q 046000          369 MTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFS  413 (470)
Q Consensus       369 ~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~  413 (470)
                      +...+ .+++|++|++++|++.+..+..+..+++|+.|++++|++.
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            87665 6889999999999988766677888899999999999875

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=1.7e-22  Score=179.56  Aligned_cols=229  Identities=19%  Similarity=0.160  Sum_probs=178.3

Q ss_pred             CCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEE
Q 046000          182 HDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFL  261 (470)
Q Consensus       182 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  261 (470)
                      +..+..+.+..+.+.+..   ....+++|+.|++.++.+.. . ..+..+++|+.|++++|.+...  ..+..+++|++|
T Consensus        18 ~~~l~~l~l~~~~~~~~~---~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L   90 (272)
T 3rfs_A           18 FAETIKANLKKKSVTDAV---TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYL   90 (272)
T ss_dssp             HHHHHHHHHTCSCTTSEE---CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEE
T ss_pred             HHHHHHHHhcCccccccc---ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEE
Confidence            445556667666655332   23347899999999999873 2 4588999999999999998753  468889999999


Q ss_pred             ecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcc
Q 046000          262 DRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFL  341 (470)
Q Consensus       262 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~  341 (470)
                      ++++|.+.......+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.                      
T Consensus        91 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----------------------  148 (272)
T 3rfs_A           91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL----------------------  148 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC----------------------
T ss_pred             ECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCcc----------------------
Confidence            9999999987777789999999999999999977777788888899998888877622                      


Q ss_pred             cCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhh
Q 046000          342 KGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQI  420 (470)
Q Consensus       342 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~  420 (470)
                         .+..+..+++|+.|++++|.+++++...+ .+++|++|++++|++.+..+..+..+++|+.|++++|++..      
T Consensus       149 ---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------  219 (272)
T 3rfs_A          149 ---PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------  219 (272)
T ss_dssp             ---CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC------
T ss_pred             ---CHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc------
Confidence               22334556777777777777777766654 57888888888888887767777788888888888887763      


Q ss_pred             hcCCCCcEEEccCcccCcccchhhccCCC
Q 046000          421 NESSNLRVLLLRGNYLEGPISNQFCQLRR  449 (470)
Q Consensus       421 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~  449 (470)
                       .+++|+.++++.|.+.+.+|..++.++.
T Consensus       220 -~~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          220 -TCPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             -CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             -cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence             3667888888888888888887777654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=2.3e-23  Score=193.35  Aligned_cols=254  Identities=19%  Similarity=0.167  Sum_probs=167.0

Q ss_pred             EEccccccCCccCCCCCCCCcccEEeccCCcccCCCCc---chhhhhc-cCceeeccCCccCCCCchhhcCC-----CCc
Q 046000          164 LCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQ---DKGIILQ-KLLYIDMANNRFEGNLPSSIGDM-----KTL  234 (470)
Q Consensus       164 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~l-----~~L  234 (470)
                      +.++++++++..+..+...++|++|++++|.+.+..+.   ..+..++ +|++|++++|.+.+..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            45666666655555555566688888888887743331   2333355 78888888888876666665554     788


Q ss_pred             cEEEccccccccccCcc----ccCC-CcccEEecCCCcCCCcchhhhc----C-cccccEEEccccccccccc----hhh
Q 046000          235 TFLHLSKNNFSGELSTL----FTGC-VSLWFLDRSHNNFHDQIFPKYM----N-LTRLWFLYLDNNKFSGKIE----DGL  300 (470)
Q Consensus       235 ~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~~~----~-~~~L~~l~l~~~~~~~~~~----~~~  300 (470)
                      +.|++++|.+....+..    +..+ ++|++|++++|.+.+.....+.    . .++|++|++++|.+.+...    ..+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            88888888877555443    3334 6888888888887765554433    3 3588888888887774333    233


Q ss_pred             cCCC-CccEEECCCCcccCCcchhHHhh----hccccEEEcCCCcccCC----Cchhhhc-cCCCeEEEccCccccCccc
Q 046000          301 LKSN-QLKELDMSNNMLSGHIPHWIANF----SSYLEVLLMSKNFLKGN----IPMQLLN-HGSLQLLSVSENCLSGFMT  370 (470)
Q Consensus       301 ~~~~-~L~~L~l~~~~~~~~~~~~~~~~----~~~l~~L~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~~~l~~~~~  370 (470)
                      ...+ +|++|++++|.+.+..+..++..    +..++.|++++|.+.+.    ++..+.. .++|++|++++|.+++.+.
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            4444 78888888888876666555443    23488888888887643    3444444 4588888888888877654


Q ss_pred             ccc-----ccCcccEEEccCCcccccC-------ccchhcCCCccEEEcCCccceeecc
Q 046000          371 SSF-----SLSSLVHLYVQRNDLSGTI-------PNALFRSSKLMTLDLRDNGFSGIIS  417 (470)
Q Consensus       371 ~~~-----~~~~L~~L~l~~~~l~~~~-------~~~l~~~~~L~~L~l~~n~l~~~~~  417 (470)
                      ..+     .+++|++|++++|.+.+..       +..+..+++|+.||+++|++....+
T Consensus       243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence            221     5678888888888744332       2345566778888888888765433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=2.6e-21  Score=173.15  Aligned_cols=200  Identities=25%  Similarity=0.205  Sum_probs=169.7

Q ss_pred             hhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEE
Q 046000          206 ILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFL  285 (470)
Q Consensus       206 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  285 (470)
                      .+++++.++++++.+. .+|..+.  +.++.|++++|.+....+..+..+++|++|++++|.+.....  ...+++|+.|
T Consensus         8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L   82 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTL   82 (290)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEE
T ss_pred             ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEE
Confidence            3678999999999888 4555443  689999999999988888889999999999999999876433  3688999999


Q ss_pred             EccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccc
Q 046000          286 YLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCL  365 (470)
Q Consensus       286 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  365 (470)
                      ++++|.+. ..+..+..+++|+.|++++|.+.+..+..+..+.. ++.|++++|.+....+..+..+++|+.|++++|++
T Consensus        83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE-LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT-CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCC-CCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            99999988 45667788999999999999998555566666666 99999999999876677788899999999999999


Q ss_pred             cCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccce
Q 046000          366 SGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFS  413 (470)
Q Consensus       366 ~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~  413 (470)
                      +.++...+ .+++|++|++++|++. .+|..+...++|+.+++++|++.
T Consensus       161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            99988776 6899999999999998 66777777889999999999875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=5.2e-22  Score=182.74  Aligned_cols=200  Identities=18%  Similarity=0.167  Sum_probs=156.6

Q ss_pred             CCCcEEEccccccCCccCCCCCCC--CcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCC-CchhhcCCCCcc
Q 046000          159 TKLEVLCLTNNSFTGNLQLPHSKH--DFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGN-LPSSIGDMKTLT  235 (470)
Q Consensus       159 ~~L~~L~l~~~~i~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~  235 (470)
                      ..++.++++++.+.   +..+..+  ++++.++++++.+.+..+. .+ .+++|++|++++|.+.+. .+..+..+++|+
T Consensus        47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~-~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CC-CCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred             hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hc-cCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence            44789999988766   3334444  7899999999998865554 33 389999999999998754 677789999999


Q ss_pred             EEEccccccccccCccccCCCcccEEecCCC-cCCCc-chhhhcCcccccEEEcccc-ccccc-cchhhcCCC-CccEEE
Q 046000          236 FLHLSKNNFSGELSTLFTGCVSLWFLDRSHN-NFHDQ-IFPKYMNLTRLWFLYLDNN-KFSGK-IEDGLLKSN-QLKELD  310 (470)
Q Consensus       236 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~l~l~~~-~~~~~-~~~~~~~~~-~L~~L~  310 (470)
                      .|++++|.+....+..+..+++|++|++++| .+.+. ....+..+++|+.|++++| .+++. .+..+..++ +|++|+
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~  201 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN  201 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred             EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence            9999999988777778888999999999999 56653 4455778999999999999 88754 456678889 999999


Q ss_pred             CCCCc--cc-CCcchhHHhhhccccEEEcCCCc-ccCCCchhhhccCCCeEEEccCcc
Q 046000          311 MSNNM--LS-GHIPHWIANFSSYLEVLLMSKNF-LKGNIPMQLLNHGSLQLLSVSENC  364 (470)
Q Consensus       311 l~~~~--~~-~~~~~~~~~~~~~l~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~  364 (470)
                      +++|.  +. +.++..+..++. ++.|++++|. +++..+..+..+++|+.|++++|.
T Consensus       202 l~~~~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          202 LSGYRKNLQKSDLSTLVRRCPN-LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             CCSCGGGSCHHHHHHHHHHCTT-CSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             eCCCcccCCHHHHHHHHhhCCC-CCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            99994  44 345555555555 9999999998 665566666666777777776664

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=6.6e-23  Score=192.28  Aligned_cols=250  Identities=19%  Similarity=0.203  Sum_probs=170.1

Q ss_pred             hccCceeeccCCccCCCCc----hhhcCCCCccEEEccccccc---cccCc-------cccCCCcccEEecCCCcCCCc-
Q 046000          207 LQKLLYIDMANNRFEGNLP----SSIGDMKTLTFLHLSKNNFS---GELST-------LFTGCVSLWFLDRSHNNFHDQ-  271 (470)
Q Consensus       207 ~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~---~~~~~-------~~~~l~~L~~L~l~~~~~~~~-  271 (470)
                      ++.|++|++++|.+....+    ..+..+++|+.|++++|.+.   ...+.       .+..+++|++|++++|.+... 
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            5667777777776654322    23556777777777775433   22222       235677888888888887763 


Q ss_pred             ---chhhhcCcccccEEEccccccccccchhh----cCC---------CCccEEECCCCcccC-Ccc---hhHHhhhccc
Q 046000          272 ---IFPKYMNLTRLWFLYLDNNKFSGKIEDGL----LKS---------NQLKELDMSNNMLSG-HIP---HWIANFSSYL  331 (470)
Q Consensus       272 ---~~~~~~~~~~L~~l~l~~~~~~~~~~~~~----~~~---------~~L~~L~l~~~~~~~-~~~---~~~~~~~~~l  331 (470)
                         .+..+..+++|+.|++++|.+....+..+    ..+         ++|++|++++|.+.. .++   ..+.... .+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L  189 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR-LL  189 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT-TC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC-Cc
Confidence               44456677888888888887764333322    233         788999999988862 333   2333444 48


Q ss_pred             cEEEcCCCcccC-----CCchhhhccCCCeEEEccCcccc-----CccccccccCcccEEEccCCccccc----Cccchh
Q 046000          332 EVLLMSKNFLKG-----NIPMQLLNHGSLQLLSVSENCLS-----GFMTSSFSLSSLVHLYVQRNDLSGT----IPNALF  397 (470)
Q Consensus       332 ~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~l~~~----~~~~l~  397 (470)
                      +.|++++|.++.     ..+..+..+++|+.|++++|.++     .++.....+++|++|++++|.+++.    ++..+.
T Consensus       190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~  269 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS  269 (386)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred             CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence            899999988762     23336778999999999999984     3333333789999999999999865    345554


Q ss_pred             c--CCCccEEEcCCcccee----ecchhh-hcCCCCcEEEccCcccCcccc--hhh-ccCCCCCeEEccC
Q 046000          398 R--SSKLMTLDLRDNGFSG----IISDQI-NESSNLRVLLLRGNYLEGPIS--NQF-CQLRRLGVMDLSH  457 (470)
Q Consensus       398 ~--~~~L~~L~l~~n~l~~----~~~~~~-~~~~~L~~L~l~~n~i~~~~~--~~~-~~l~~L~~l~l~~  457 (470)
                      .  +++|+.|++++|++..    .++..+ .++++|++|++++|++++..+  ..+ ..++.++..++..
T Consensus       270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~  339 (386)
T 2ca6_A          270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE  339 (386)
T ss_dssp             TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred             hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence            3  8999999999999987    366666 668999999999999987663  222 2244444555443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=8.2e-21  Score=171.74  Aligned_cols=211  Identities=22%  Similarity=0.272  Sum_probs=153.0

Q ss_pred             CceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccc
Q 046000          210 LLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDN  289 (470)
Q Consensus       210 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~  289 (470)
                      +....+..+.+.+.  ..+..+++|+.|+++++.+....  .+..+++|++|++++|.+.+...  +..+++|+.|++++
T Consensus        21 ~~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~   94 (308)
T 1h6u_A           21 AIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSG   94 (308)
T ss_dssp             HHHHHTTCSSTTSE--ECHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCS
T ss_pred             HHHHHhCCCCcCce--ecHHHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccC
Confidence            33444555544432  23456788999999999887542  57788999999999998877544  88889999999999


Q ss_pred             cccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcc
Q 046000          290 NKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFM  369 (470)
Q Consensus       290 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  369 (470)
                      |.+.+.  ..+..+++|+.|++++|.+.+ ++. +..+.. ++.|++++|.+++..+  +..+++|+.|++++|.+.+++
T Consensus        95 n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~-L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~  167 (308)
T 1h6u_A           95 NPLKNV--SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSN-LQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT  167 (308)
T ss_dssp             CCCSCC--GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTT-CCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred             CcCCCc--hhhcCCCCCCEEECCCCCCCC-chh-hcCCCC-CCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh
Confidence            988753  357788889999999988873 333 444444 8888888887764332  667788888888888877766


Q ss_pred             ccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc
Q 046000          370 TSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG  438 (470)
Q Consensus       370 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~  438 (470)
                      . ...+++|++|++++|.+.+..+  +..+++|+.|++++|++.+..  .+..+++|++|++++|++++
T Consensus       168 ~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          168 P-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             G-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             h-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            5 3367788888888888775433  667788888888888877543  26777888888888888764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=1.8e-20  Score=164.50  Aligned_cols=179  Identities=17%  Similarity=0.150  Sum_probs=119.4

Q ss_pred             cccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEc
Q 046000          257 SLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLM  336 (470)
Q Consensus       257 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l  336 (470)
                      ..+.++++++.+.... ..+.  ++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+.. ++.|++
T Consensus        15 ~~~~l~~~~~~l~~~p-~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVP-SGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE-LGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCSSCC-SCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT-CCEEEC
T ss_pred             CCeEEecCCCCccccC-CCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCc-CCEEEC
Confidence            4567777777765432 2222  56777888877777666666777777777777777777544444555444 777777


Q ss_pred             CCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceee
Q 046000          337 SKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGI  415 (470)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~  415 (470)
                      ++|.+++..+..+..+++|++|++++|.++.++...+ .+++|++|++++|++.+..+..+..+++|+.|++++|++.+.
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            7777765555566667777777777777776666554 566777777777777655555666667777777777777655


Q ss_pred             cchhhhcCCCCcEEEccCcccCcc
Q 046000          416 ISDQINESSNLRVLLLRGNYLEGP  439 (470)
Q Consensus       416 ~~~~~~~~~~L~~L~l~~n~i~~~  439 (470)
                      .+..+..+++|++|++++|++...
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CHHHHhCCCCCCEEEeeCCceeCC
Confidence            555666677777777777776643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=4.7e-21  Score=167.05  Aligned_cols=195  Identities=18%  Similarity=0.182  Sum_probs=98.1

Q ss_pred             CccEEEccccccccccCccccCCCcccEEecCCCc-CCCcchhhhcCcccccEEEccc-cccccccchhhcCCCCccEEE
Q 046000          233 TLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNN-FHDQIFPKYMNLTRLWFLYLDN-NKFSGKIEDGLLKSNQLKELD  310 (470)
Q Consensus       233 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~L~  310 (470)
                      +++.|++++|.+....+..+..+++|++|++++|. +.......|..+++|+.|++++ |.+....+..+..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            45555555555554444445555555555555554 4443344455555666666655 555544444555666666666


Q ss_pred             CCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCe---EEEccCc-cccCcccccc-ccCccc-EEEcc
Q 046000          311 MSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQ---LLSVSEN-CLSGFMTSSF-SLSSLV-HLYVQ  384 (470)
Q Consensus       311 l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~l~~~~~~~~-~~~~L~-~L~l~  384 (470)
                      +++|.+.+ +|.                          +..+++|+   .|++++| .+..++...+ .+++|+ +|+++
T Consensus       112 l~~n~l~~-lp~--------------------------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~  164 (239)
T 2xwt_C          112 IFNTGLKM-FPD--------------------------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY  164 (239)
T ss_dssp             EEEECCCS-CCC--------------------------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred             CCCCCCcc-ccc--------------------------cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence            66665542 322                          11222222   5555555 4444444333 345555 55555


Q ss_pred             CCcccccCccchhcCCCccEEEcCCcc-ceeecchhhhcC-CCCcEEEccCcccCcccchhhccCCCCCeEEccCc
Q 046000          385 RNDLSGTIPNALFRSSKLMTLDLRDNG-FSGIISDQINES-SNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHN  458 (470)
Q Consensus       385 ~~~l~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n  458 (470)
                      +|++....+..+.. ++|+.|++++|+ +....+..+..+ ++|++|++++|+++. +|..  .++.|+.|+++++
T Consensus       165 ~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          165 NNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             SCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred             CCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence            55555333333333 555555555553 554444455555 556666666665553 2222  3455555555554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=3.1e-21  Score=175.03  Aligned_cols=206  Identities=19%  Similarity=0.174  Sum_probs=105.6

Q ss_pred             CCCCcEEEccCCccccccchhh--hcCcCCcEEeccCccCcCccC---hhhhccccccceecccCCCCccccccccCCCC
Q 046000           54 MTRLKVLDTSFNQLSGSLPSVI--VNLASVEYLDLSNSYFEGTFP---ISSLANHSKLKVLRLSSRNNNMLQLKTENFLP  128 (470)
Q Consensus        54 ~~~L~~L~l~~~~i~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  128 (470)
                      +++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+   ...+..+++|++|++++|.+....      ..
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~------~~  163 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFS------CE  163 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCC------TT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhh------HH
Confidence            3446666666665555555554  555566666666665554322   122334556666666555543111      12


Q ss_pred             cccccCcccEEEccCccccCc--cc-hHhhhcCCCCcEEEccccccCCccCC---CCCCCCcccEEeccCCcccCCCCcc
Q 046000          129 TFQLKHDLKYLDLSHNNLAGD--FP-AWILQNNTKLEVLCLTNNSFTGNLQL---PHSKHDFLHHLDVSSNNFTGKLPQD  202 (470)
Q Consensus       129 ~~~~~~~L~~L~l~~~~i~~~--~~-~~~~~~~~~L~~L~l~~~~i~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~  202 (470)
                      .+..+++|++|++++|.+.+.  ++ ...+..+++|++|++++|+++.....   .+..+++|++|++++|.+.+..|..
T Consensus       164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~  243 (310)
T 4glp_A          164 QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS  243 (310)
T ss_dssp             SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred             HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence            344455566666666654321  11 11123455566666666655421111   1234455666666666665443433


Q ss_pred             hhhh--hccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCC
Q 046000          203 KGII--LQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHD  270 (470)
Q Consensus       203 ~~~~--~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  270 (470)
                      +...  +++|++|++++|.+. .+|..+.  ++|+.|++++|.+....  .+..+++|+.|++++|.+.+
T Consensus       244 ~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          244 APRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAP--QPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCC--CTTSCCCCSCEECSSTTTSC
T ss_pred             HHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCc--hhhhCCCccEEECcCCCCCC
Confidence            3321  246666666666666 3444432  56666666666665431  14556677777777776654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=4.6e-21  Score=173.90  Aligned_cols=204  Identities=18%  Similarity=0.111  Sum_probs=119.0

Q ss_pred             CccEEEccccccccccCccc--cCCCcccEEecCCCcCCCcch----hhhcCcccccEEEccccccccccchhhcCCCCc
Q 046000          233 TLTFLHLSKNNFSGELSTLF--TGCVSLWFLDRSHNNFHDQIF----PKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQL  306 (470)
Q Consensus       233 ~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L  306 (470)
                      +|++|++++|.+....+..+  ..+++|++|++++|.+.....    ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            35555555555444444443  445555555555555543211    223356666777777766665555666667777


Q ss_pred             cEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccc---c-cccCcccEEE
Q 046000          307 KELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTS---S-FSLSSLVHLY  382 (470)
Q Consensus       307 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~---~-~~~~~L~~L~  382 (470)
                      ++|++++|++.+....                     ..+..+..+++|++|++++|.++.++..   . ..+++|++|+
T Consensus       172 ~~L~Ls~N~l~~~~~~---------------------~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~  230 (310)
T 4glp_A          172 TSLDLSDNPGLGERGL---------------------MAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLD  230 (310)
T ss_dssp             CEEECCSCTTCHHHHH---------------------HTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEE
T ss_pred             CEEECCCCCCccchhh---------------------hHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEE
Confidence            7777777765311000                     0011123455666666666666544432   1 1456777777


Q ss_pred             ccCCcccccCccchhcC---CCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcc
Q 046000          383 VQRNDLSGTIPNALFRS---SKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNR  459 (470)
Q Consensus       383 l~~~~l~~~~~~~l~~~---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~  459 (470)
                      +++|++.+..|..+..+   ++|+.|++++|+++ .+|..+  .++|++|++++|++++. |. +..+++|+.|++++|+
T Consensus       231 Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~--~~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          231 LSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL--PAKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC--CSCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTT
T ss_pred             CCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh--cCCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCC
Confidence            77777776555555544   57777777777777 445544  26788888888877742 33 5667788888888887


Q ss_pred             ccc
Q 046000          460 ING  462 (470)
Q Consensus       460 ~~~  462 (470)
                      ++.
T Consensus       306 l~~  308 (310)
T 4glp_A          306 FLV  308 (310)
T ss_dssp             TSC
T ss_pred             CCC
Confidence            763

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=1.3e-20  Score=164.16  Aligned_cols=186  Identities=18%  Similarity=0.141  Sum_probs=129.8

Q ss_pred             cccEEEccccccccccchhhcCCCCccEEECCCCc-ccCCcchhHHhhhccccEEEcCC-CcccCCCchhhhccCCCeEE
Q 046000          281 RLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNM-LSGHIPHWIANFSSYLEVLLMSK-NFLKGNIPMQLLNHGSLQLL  358 (470)
Q Consensus       281 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~L~l~~-~~~~~~~~~~~~~~~~L~~L  358 (470)
                      +++.+++++|++.+..+..+..+++|+.|++++|+ +.+..+..+..+.. ++.|++++ |.+....+..+..+++|+.|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~-L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSK-VTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTT-CCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcC-CcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            34444444444443333344444455555555443 33111122222332 55555555 55554445667788999999


Q ss_pred             EccCccccCccccccccCccc---EEEccCC-cccccCccchhcCCCcc-EEEcCCccceeecchhhhcCCCCcEEEccC
Q 046000          359 SVSENCLSGFMTSSFSLSSLV---HLYVQRN-DLSGTIPNALFRSSKLM-TLDLRDNGFSGIISDQINESSNLRVLLLRG  433 (470)
Q Consensus       359 ~l~~~~l~~~~~~~~~~~~L~---~L~l~~~-~l~~~~~~~l~~~~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  433 (470)
                      ++++|.++.++. ...+++|+   +|++++| .+....+..+..+++|+ .|++++|++....+..+.. ++|++|++++
T Consensus       111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK  188 (239)
T ss_dssp             EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred             eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence            999999998776 44677777   9999999 99877777899999999 9999999999554445555 8999999999


Q ss_pred             cc-cCcccchhhccC-CCCCeEEccCcccccccCCCcc
Q 046000          434 NY-LEGPISNQFCQL-RRLGVMDLSHNRINGSIPSCFT  469 (470)
Q Consensus       434 n~-i~~~~~~~~~~l-~~L~~l~l~~n~~~~~~p~~~~  469 (470)
                      |+ ++...+..+..+ ++|+.|++++|++++..+..|.
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~  226 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLE  226 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCT
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCccccCChhHhc
Confidence            96 987777889999 9999999999999954444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=5.8e-20  Score=166.13  Aligned_cols=193  Identities=18%  Similarity=0.230  Sum_probs=164.6

Q ss_pred             hhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEE
Q 046000          206 ILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFL  285 (470)
Q Consensus       206 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  285 (470)
                      .+++|++|++++|.+.. ++ .+..+++|+.|++++|.+....+  +..+++|++|++++|.+.+.  ..+..+++|+.|
T Consensus        39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L  112 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL  112 (308)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred             HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence            47899999999999884 44 68899999999999999886555  88999999999999998774  468899999999


Q ss_pred             EccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccc
Q 046000          286 YLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCL  365 (470)
Q Consensus       286 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  365 (470)
                      ++++|.+.+..  .+..+++|+.|++++|.+.+ ++. +..+.. ++.|++++|.+.+ ++. +..+++|+.|++++|.+
T Consensus       113 ~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~-L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          113 DLTSTQITDVT--PLAGLSNLQVLYLDLNQITN-ISP-LAGLTN-LQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             ECTTSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGG-GGGCTT-CCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC
T ss_pred             ECCCCCCCCch--hhcCCCCCCEEECCCCccCc-Ccc-ccCCCC-ccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCcc
Confidence            99999998543  38899999999999999974 333 555555 9999999999984 333 88899999999999999


Q ss_pred             cCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCcccee
Q 046000          366 SGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSG  414 (470)
Q Consensus       366 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~  414 (470)
                      .+++. ...+++|++|++++|++.+..  .+..+++|+.|++++|+++.
T Consensus       186 ~~~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          186 SDISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCCGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             CcChh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            98776 447899999999999998654  37889999999999999975

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.82  E-value=2.4e-19  Score=157.26  Aligned_cols=178  Identities=21%  Similarity=0.185  Sum_probs=133.9

Q ss_pred             CccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECC
Q 046000          233 TLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMS  312 (470)
Q Consensus       233 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~  312 (470)
                      ..+.++++++.+..... .+.  ++++.|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus        15 ~~~~l~~~~~~l~~~p~-~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPS-GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCSSCCS-CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCccccCC-CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            45677888777764333 222  578888888888877777777888888888888888887667777788888888888


Q ss_pred             CCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCccccc
Q 046000          313 NNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGT  391 (470)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~  391 (470)
                      +|.+.+..+..+..+.. +++|++++|.+++..+..+..+++|+.|++++|.+..++...+ .+++|++|++++|++.+.
T Consensus        92 ~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQ-LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TSCCCCCCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcccccChhHhcccCC-CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            88887444445555544 8888888888875556667778888888888888887777555 678888888888888866


Q ss_pred             CccchhcCCCccEEEcCCcccee
Q 046000          392 IPNALFRSSKLMTLDLRDNGFSG  414 (470)
Q Consensus       392 ~~~~l~~~~~L~~L~l~~n~l~~  414 (470)
                      .+..+..+++|+.|++++|++..
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CHHHHhCCCCCCEEEeeCCceeC
Confidence            66677788888888888888764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=8e-19  Score=161.89  Aligned_cols=198  Identities=19%  Similarity=0.196  Sum_probs=109.6

Q ss_pred             cEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccc-cCccccCCCcccE-Eec
Q 046000          186 HHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGE-LSTLFTGCVSLWF-LDR  263 (470)
Q Consensus       186 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~-L~l  263 (470)
                      +.++.+++.++ .+|..+   .+++++|++++|.+....+.+|.++++|+.|++++|.+.+. ...+|.+++++.. +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            45666666666 666654   34677777777777755555677777777777777776443 3456666766654 344


Q ss_pred             CCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCC-cccCCcc-hhHHhhhccccEEEcCCCcc
Q 046000          264 SHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNN-MLSGHIP-HWIANFSSYLEVLLMSKNFL  341 (470)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~-~~~~~~~~~l~~L~l~~~~~  341 (470)
                      ..|++.......|..+++|+++++++|++....+..+....++..+++.++ .+. .++ ..+......++.|++++|.+
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccccc
Confidence            556666655566667777777777777766554444445555566666443 333 222 22222222344455555554


Q ss_pred             cCCCchhhhccCCCeEEEccC-ccccCcccccc-ccCcccEEEccCCccc
Q 046000          342 KGNIPMQLLNHGSLQLLSVSE-NCLSGFMTSSF-SLSSLVHLYVQRNDLS  389 (470)
Q Consensus       342 ~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~-~~~~L~~L~l~~~~l~  389 (470)
                      + .++.......+|+.+++.+ |.++.++...+ .+++|++|++++|+++
T Consensus       167 ~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          167 Q-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             C-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred             c-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence            4 2222222333455555542 34444444443 4455555555555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=4.5e-19  Score=150.89  Aligned_cols=179  Identities=18%  Similarity=0.129  Sum_probs=90.8

Q ss_pred             cEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCC
Q 046000          259 WFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSK  338 (470)
Q Consensus       259 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~  338 (470)
                      +.++++++.+..... .  -.+++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+.. +++|++++
T Consensus        10 ~~v~c~~~~l~~~p~-~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRTSVPT-G--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS-LTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCSSCCS-C--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT-CCEEECCS
T ss_pred             CEEEecCCCccCCCC-C--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCC-cCEEECCC
Confidence            455555555543221 1  1346666777666666555555566666666666666665222222233332 55555555


Q ss_pred             CcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecc
Q 046000          339 NFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIIS  417 (470)
Q Consensus       339 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~  417 (470)
                      |.+++..+..+..+++|++|++++|.+..++...+ .+++|++|++++|.+++..+..+..+++|+.|++++|++..   
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---  162 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---  162 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence            55553333344455555555555555555444433 44555555555555554444444455555555555554431   


Q ss_pred             hhhhcCCCCcEEEccCcccCcccchhhccCC
Q 046000          418 DQINESSNLRVLLLRGNYLEGPISNQFCQLR  448 (470)
Q Consensus       418 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~  448 (470)
                          .+++|+.|+++.|.+++.+|..++.++
T Consensus       163 ----~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          163 ----TCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             ----CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             ----CCCCHHHHHHHHHhCCceeeccCcccc
Confidence                234455555555555555555544443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.78  E-value=1.5e-18  Score=160.15  Aligned_cols=242  Identities=14%  Similarity=0.045  Sum_probs=183.8

Q ss_pred             cEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCC-chhhcCCCCccE-EEc
Q 046000          162 EVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNL-PSSIGDMKTLTF-LHL  239 (470)
Q Consensus       162 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~-L~l  239 (470)
                      ++++.++++++.+. ..+  .+++++|++++|.+. .+|...+..+++|++|++++|.+.+.+ +.+|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt~iP-~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVTEIP-SDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCCSCC-TTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCCccC-cCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            56777777777433 333  467999999999998 788777777999999999999986544 456888888776 556


Q ss_pred             cccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccc-cccccccchhhcCC-CCccEEECCCCccc
Q 046000          240 SKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDN-NKFSGKIEDGLLKS-NQLKELDMSNNMLS  317 (470)
Q Consensus       240 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~-~~L~~L~l~~~~~~  317 (470)
                      ..|.+....+..|..+++|++|++++|.+.......+....++..+++.+ +.+.......+... ..++.|++++|.+.
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            67888888888999999999999999998876666666677788888866 45654445555555 46889999999998


Q ss_pred             CCcchhHHhhhccccEEEcCC-CcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccch
Q 046000          318 GHIPHWIANFSSYLEVLLMSK-NFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNAL  396 (470)
Q Consensus       318 ~~~~~~~~~~~~~l~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l  396 (470)
                       .++...+.... ++.+.+.+ |.++...+..|..+++|+.|++++|+++.++...  +.+|++|.+.++.-....| .+
T Consensus       168 -~i~~~~f~~~~-L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--~~~L~~L~~l~~~~l~~lP-~l  242 (350)
T 4ay9_X          168 -EIHNSAFNGTQ-LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRARSTYNLKKLP-TL  242 (350)
T ss_dssp             -EECTTSSTTEE-EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS--CTTCCEEECTTCTTCCCCC-CT
T ss_pred             -CCChhhccccc-hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh--hccchHhhhccCCCcCcCC-Cc
Confidence             66665555554 88999875 5565444456789999999999999999988765  5677777776665433555 47


Q ss_pred             hcCCCccEEEcCCccc
Q 046000          397 FRSSKLMTLDLRDNGF  412 (470)
Q Consensus       397 ~~~~~L~~L~l~~n~l  412 (470)
                      ..+++|+.++++++..
T Consensus       243 ~~l~~L~~l~l~~~~~  258 (350)
T 4ay9_X          243 EKLVALMEASLTYPSH  258 (350)
T ss_dssp             TTCCSCCEEECSCHHH
T ss_pred             hhCcChhhCcCCCCcc
Confidence            7889999999987653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=2.5e-18  Score=147.22  Aligned_cols=153  Identities=23%  Similarity=0.260  Sum_probs=91.2

Q ss_pred             EEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCc-hhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccC
Q 046000          308 ELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIP-MQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQR  385 (470)
Q Consensus       308 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~  385 (470)
                      .++++++.+. .+|..+   +..++.|++++|.+++..+ ..+..+++|+.|++++|.++.++...+ .+++|++|++++
T Consensus        15 ~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           15 TVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             EEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            4555555544 334322   2224555555555553322 335566666666666666666655444 566666666666


Q ss_pred             CcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCccccccc
Q 046000          386 NDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSI  464 (470)
Q Consensus       386 ~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~  464 (470)
                      |.+.+..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|++++..|..+..+++|+.|++++|+++...
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            6666555555666666666666666666655666666666666666666666655666666666666666666665443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.77  E-value=1.7e-18  Score=167.74  Aligned_cols=188  Identities=25%  Similarity=0.288  Sum_probs=140.6

Q ss_pred             CccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECC
Q 046000          233 TLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMS  312 (470)
Q Consensus       233 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~  312 (470)
                      +++.|++++|.+... +..+  .++|++|++++|.+....    ..+++|+.|++++|.+++ .+. +..  +|+.|+++
T Consensus        60 ~L~~L~Ls~n~L~~l-p~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSSL-PDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSCC-CSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCcc-CHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            789999999988763 3333  378999999999887533    457889999999988886 343 433  88999999


Q ss_pred             CCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccC
Q 046000          313 NNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTI  392 (470)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~  392 (470)
                      +|.+.+ +|.    ....++.|++++|.+++ +|.   .+++|+.|++++|.++.++.  +. ++|+.|++++|+++ .+
T Consensus       129 ~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~--l~-~~L~~L~Ls~N~L~-~l  195 (571)
T 3cvr_A          129 NNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE--LP-ESLEALDVSTNLLE-SL  195 (571)
T ss_dssp             SSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC--CC-TTCCEEECCSSCCS-SC
T ss_pred             CCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch--hh-CCCCEEECcCCCCC-ch
Confidence            988874 555    23448888888888874 554   46788888888888888776  33 78888888888888 44


Q ss_pred             ccchhcCCCc-------cEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCC
Q 046000          393 PNALFRSSKL-------MTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLR  448 (470)
Q Consensus       393 ~~~l~~~~~L-------~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~  448 (470)
                      |. +..  +|       +.|++++|+++ .+|..+..+++|+.|++++|++++.+|..+..++
T Consensus       196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            44 432  66       88888888888 4677677788888888888888887777776653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=7.1e-18  Score=151.04  Aligned_cols=172  Identities=21%  Similarity=0.221  Sum_probs=120.9

Q ss_pred             cCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhcccc
Q 046000          253 TGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLE  332 (470)
Q Consensus       253 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  332 (470)
                      ..+++|+.|++++|.+...  ..+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+ ++. +..+.. ++
T Consensus        43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~-L~  115 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS-LKDLKK-LK  115 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG-GTTCTT-CC
T ss_pred             hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh-hccCCC-CC
Confidence            4567888888888887654  346778888888888888875444  7788888888888888763 332 444444 77


Q ss_pred             EEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccc
Q 046000          333 VLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGF  412 (470)
Q Consensus       333 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l  412 (470)
                      .|++++|.+.+.  ..+..+++|+.|++++|.+.++ .....+++|++|++++|.+.+..+  +..+++|+.|++++|++
T Consensus       116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence            777777777642  3466777777777777777766 233366777777777777775443  66777777777777777


Q ss_pred             eeecchhhhcCCCCcEEEccCcccCc
Q 046000          413 SGIISDQINESSNLRVLLLRGNYLEG  438 (470)
Q Consensus       413 ~~~~~~~~~~~~~L~~L~l~~n~i~~  438 (470)
                      .+. + .+..+++|+.|++++|++..
T Consensus       191 ~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          191 SDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCC-h-hhccCCCCCEEECcCCcccC
Confidence            643 3 36777777777777777764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=4.8e-18  Score=145.43  Aligned_cols=151  Identities=19%  Similarity=0.191  Sum_probs=89.9

Q ss_pred             cEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccC
Q 046000          283 WFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSE  362 (470)
Q Consensus       283 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  362 (470)
                      +.++++++++... +..+  .++++.|++++|.+.+..+..+..+.. ++.|++++|.+.+..+..+..+++|++|++++
T Consensus        14 ~~v~c~~~~l~~i-P~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~-L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLTEI-PTNL--PETITEIRLEQNTIKVIPPGAFSPYKK-LRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCSSC-CSSC--CTTCCEEECCSSCCCEECTTSSTTCTT-CCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcCcC-CCcc--CcCCCEEECCCCcCCCcCHhHhhCCCC-CCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            4556666655532 2222  256677777777666333334444443 66666666666655566666666666666666


Q ss_pred             ccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccC
Q 046000          363 NCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLE  437 (470)
Q Consensus       363 ~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~  437 (470)
                      |.++.++...+ .+++|++|++++|++.+..+..+..+++|+.|++++|++....++.+..+++|++|++++|++.
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            66666665554 4666666666666666555566666666666666666666555555666666666666666654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.76  E-value=1.1e-17  Score=142.24  Aligned_cols=149  Identities=19%  Similarity=0.212  Sum_probs=73.3

Q ss_pred             cEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeecc
Q 046000          137 KYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMA  216 (470)
Q Consensus       137 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  216 (470)
                      +.++.+++.+. .+|..+   .++++.|+++++++.......+..+++|++|++++|.+. .++...+..+++|++|+++
T Consensus        10 ~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECC
Confidence            45566666555 444322   345666666666655444444555555555555555555 3343333334555555555


Q ss_pred             CCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcccc
Q 046000          217 NNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNN  290 (470)
Q Consensus       217 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~  290 (470)
                      +|.+.+..+..|..+++|+.|++++|.+....+..+..+++|++|++++|.+.......+..+++|+.+++++|
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A           85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence            55554333333445555555555555554444444444444555555444444333333344444444444444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=9e-18  Score=144.78  Aligned_cols=133  Identities=22%  Similarity=0.165  Sum_probs=80.1

Q ss_pred             ccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCC
Q 046000          331 LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRD  409 (470)
Q Consensus       331 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~  409 (470)
                      ++.|++++|.+.+..+..+..+++|+.|++++|.+..++...+ .+++|++|++++|+++...+..+..+++|+.|++++
T Consensus        42 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~  121 (229)
T 3e6j_A           42 AQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCC  121 (229)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccC
Confidence            5555555555555455555566666666666666665555444 456666666666666655555555666666666666


Q ss_pred             ccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCccccccc
Q 046000          410 NGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSI  464 (470)
Q Consensus       410 n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~  464 (470)
                      |++. .+|..+..+++|++|++++|+++...+..+..+++|+.|++++|+++...
T Consensus       122 N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          122 NKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             SCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             Cccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            6666 44555566666666666666666544455666666666666666665443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=2.1e-17  Score=147.98  Aligned_cols=191  Identities=20%  Similarity=0.242  Sum_probs=154.1

Q ss_pred             cCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcc
Q 046000          209 KLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLD  288 (470)
Q Consensus       209 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  288 (470)
                      ++..+.+....+.+.  ..+..+++|+.|++++|.+...  ..+..+++|++|++++|.+.+...  +..+++|+.|+++
T Consensus        25 ~~~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~   98 (291)
T 1h6t_A           25 ETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD   98 (291)
T ss_dssp             HHHHHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCcccc--cchhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence            444555666555432  2345788999999999988755  347789999999999999987544  8899999999999


Q ss_pred             ccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCc
Q 046000          289 NNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGF  368 (470)
Q Consensus       289 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  368 (470)
                      +|.+.+.  ..+..+++|+.|++++|.+.+ + ..+..+.. ++.|++++|.+++.  ..+..+++|+.|++++|.+.+.
T Consensus        99 ~n~l~~~--~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~-L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~  171 (291)
T 1h6t_A           99 ENKVKDL--SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQ-LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI  171 (291)
T ss_dssp             SSCCCCG--GGGTTCTTCCEEECTTSCCCC-C-GGGGGCTT-CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred             CCcCCCC--hhhccCCCCCEEECCCCcCCC-C-hhhcCCCC-CCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence            9998853  348889999999999999874 3 44555555 99999999998754  5688899999999999999988


Q ss_pred             cccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceee
Q 046000          369 MTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGI  415 (470)
Q Consensus       369 ~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~  415 (470)
                      ++ ...+++|++|++++|.+++. + .+..+++|+.|++++|++...
T Consensus       172 ~~-l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          172 VP-LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             GG-GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred             hh-hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCC
Confidence            76 44789999999999999854 3 488899999999999998753

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=1.4e-17  Score=163.33  Aligned_cols=188  Identities=21%  Similarity=0.219  Sum_probs=125.9

Q ss_pred             cEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCC
Q 046000          235 TFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNN  314 (470)
Q Consensus       235 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  314 (470)
                      ..+.+..+.+.....  +..+++|+.|++++|.+...  ..+..+++|+.|++++|.+.+..+  +..+++|+.|++++|
T Consensus        24 ~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N   97 (605)
T 1m9s_A           24 IKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN   97 (605)
T ss_dssp             HHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred             HHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence            334444444443322  34567788888888877653  356778888888888888775444  777888888888888


Q ss_pred             cccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCcc
Q 046000          315 MLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPN  394 (470)
Q Consensus       315 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  394 (470)
                      .+. .++ .+..+.. |+.|++++|.+.+ + ..+..+++|+.|++++|.+.++ .....+++|+.|+|++|.+.+..+ 
T Consensus        98 ~l~-~l~-~l~~l~~-L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-  170 (605)
T 1m9s_A           98 KIK-DLS-SLKDLKK-LKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-  170 (605)
T ss_dssp             CCC-CCT-TSTTCTT-CCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred             CCC-CCh-hhccCCC-CCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-
Confidence            776 333 3444444 7777777777763 2 3466777777777777777765 223366777777777777775544 


Q ss_pred             chhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc
Q 046000          395 ALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG  438 (470)
Q Consensus       395 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~  438 (470)
                       +..+++|+.|+|++|++.+.  ..+..+++|+.|+|++|++..
T Consensus       171 -l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          171 -LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             -GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             -hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence             66777777777777777653  346777777777777777764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=8.7e-18  Score=148.01  Aligned_cols=169  Identities=22%  Similarity=0.222  Sum_probs=91.7

Q ss_pred             CCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEE
Q 046000          255 CVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVL  334 (470)
Q Consensus       255 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  334 (470)
                      +.++..++++++.+.+..  .+..+++|+.|++++|.+... + .+..+++|+.|++++|.+.+ ++. +..+.. ++.|
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~-L~~L   90 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISD-LSP-LKDLTK-LEEL   90 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSS-CCEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCC-Chh-hccCCC-CCEE
Confidence            445556666666665533  455667777777777766632 2 45666677777777776653 222 333333 5566


Q ss_pred             EcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCcccee
Q 046000          335 LMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSG  414 (470)
Q Consensus       335 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~  414 (470)
                      ++++|.+++ ++.. .. ++|+.|++++|.+++++. ...+++|++|++++|++++.  ..+..+++|+.|++++|++.+
T Consensus        91 ~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           91 SVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             ECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBSGG-GTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCB
T ss_pred             ECCCCccCC-cCcc-cc-CcccEEEccCCccCCChh-hcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcc
Confidence            666665542 2221 11 555555555555555432 22455555555555555533  234555555555555555554


Q ss_pred             ecchhhhcCCCCcEEEccCcccCc
Q 046000          415 IISDQINESSNLRVLLLRGNYLEG  438 (470)
Q Consensus       415 ~~~~~~~~~~~L~~L~l~~n~i~~  438 (470)
                      .  ..+..+++|+.|++++|++..
T Consensus       165 ~--~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          165 T--GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             C--TTSTTCCCCCEEEEEEEEEEC
T ss_pred             h--HHhccCCCCCEEeCCCCcccC
Confidence            3  345555555555555555543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.73  E-value=4.7e-17  Score=157.73  Aligned_cols=188  Identities=23%  Similarity=0.313  Sum_probs=152.9

Q ss_pred             cCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcc
Q 046000          209 KLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLD  288 (470)
Q Consensus       209 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  288 (470)
                      +++.|++++|.+.+ +|..+  +++|+.|++++|.+... +   ..+++|++|++++|.+... +. +..  +|+.|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEECC
Confidence            89999999999985 66544  47899999999998843 3   4578999999999999873 33 544  99999999


Q ss_pred             ccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCc
Q 046000          289 NNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGF  368 (470)
Q Consensus       289 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  368 (470)
                      +|.+++. +.   .+++|+.|++++|.+.+ +|.    ....++.|++++|.+++ +|. +.  ++|+.|++++|.++.+
T Consensus       129 ~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~l  195 (571)
T 3cvr_A          129 NNQLTML-PE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESL  195 (571)
T ss_dssp             SSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSC
T ss_pred             CCcCCCC-CC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCch
Confidence            9999863 33   68899999999999984 665    33459999999999985 666 54  8999999999999988


Q ss_pred             cccccccCcc-------cEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCC
Q 046000          369 MTSSFSLSSL-------VHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESS  424 (470)
Q Consensus       369 ~~~~~~~~~L-------~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~  424 (470)
                      +. ...  +|       +.|++++|.++ .+|..+..+++|+.|++++|++.+.+|..+..++
T Consensus       196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            77 322  67       99999999999 5677777799999999999999988888877654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=3.4e-17  Score=160.57  Aligned_cols=187  Identities=20%  Similarity=0.225  Sum_probs=111.0

Q ss_pred             CcCceeeccCCCCCCccc---cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccC
Q 046000           12 KNLEALDLSFNNINGTVE---SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSN   88 (470)
Q Consensus        12 ~~L~~L~ls~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~   88 (470)
                      ..+..+.++.+.+.+...   +.+|+.|++++|.+... + .++.+++|++|+|++|.+.+..+  +..+++|++|+|++
T Consensus        21 ~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             HHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence            345556666666655444   66777777777777643 2 47777777777777777765443  77777777777777


Q ss_pred             ccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccc
Q 046000           89 SYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTN  168 (470)
Q Consensus        89 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~  168 (470)
                      |.+.+ .+  .+..+++|+.|++++|.+...        +.+..+++|+.|++++|.+. .++  .+..+++|+.|++++
T Consensus        97 N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~l--------~~l~~l~~L~~L~Ls~N~l~-~l~--~l~~l~~L~~L~Ls~  162 (605)
T 1m9s_A           97 NKIKD-LS--SLKDLKKLKSLSLEHNGISDI--------NGLVHLPQLESLYLGNNKIT-DIT--VLSRLTKLDTLSLED  162 (605)
T ss_dssp             SCCCC-CT--TSTTCTTCCEEECTTSCCCCC--------GGGGGCTTCSEEECCSSCCC-CCG--GGGSCTTCSEEECCS
T ss_pred             CCCCC-Ch--hhccCCCCCEEEecCCCCCCC--------ccccCCCccCEEECCCCccC-Cch--hhcccCCCCEEECcC
Confidence            77763 22  466666666776666655421        23455566666666666665 332  244566666666666


Q ss_pred             cccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccC
Q 046000          169 NSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFE  221 (470)
Q Consensus       169 ~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  221 (470)
                      |.+.+..+  +..+++|+.|++++|.+.+ ++.  +..+++|+.|++++|.+.
T Consensus       163 N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~~--l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          163 NQISDIVP--LAGLTKLQNLYLSKNHISD-LRA--LAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             SCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG--GTTCTTCSEEECCSEEEE
T ss_pred             CcCCCchh--hccCCCCCEEECcCCCCCC-ChH--HccCCCCCEEEccCCcCc
Confidence            66554333  5555556666666655542 221  223455555555555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=1.8e-17  Score=151.56  Aligned_cols=263  Identities=14%  Similarity=0.113  Sum_probs=188.2

Q ss_pred             CCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcC--------CCCccEEEccccccccccCcccc
Q 046000          182 HDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGD--------MKTLTFLHLSKNNFSGELSTLFT  253 (470)
Q Consensus       182 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~--------l~~L~~L~l~~~~~~~~~~~~~~  253 (470)
                      +++|+.|++++|.+. .+.... ..++.++.+.+..+.+   ...+|.+        +++|+.+++.+ .+......+|.
T Consensus        48 l~~L~~LdLs~n~i~-~~~~~~-~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~  121 (329)
T 3sb4_A           48 FPSLKVLDISNAEIK-MYSGKA-GTYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK  121 (329)
T ss_dssp             CTTCCEEEEEEEEEC-CEEESS-SSSGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred             hccCeEEecCcceeE-EecCcc-cccccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence            678999999999876 111111 1123344455555543   3456777        99999999998 88888888999


Q ss_pred             CCCcccEEecCCCcCCCcchhhhcCcccccEEEccccc----cccccchhhcCCCCcc-EEECCCCcccCCcchhHHhh-
Q 046000          254 GCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNK----FSGKIEDGLLKSNQLK-ELDMSNNMLSGHIPHWIANF-  327 (470)
Q Consensus       254 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~----~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~-  327 (470)
                      +|++|+.+++..|.+.......|..+.++..+......    ........+..+..|+ .+.+....   .++..+... 
T Consensus       122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~  198 (329)
T 3sb4_A          122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAG  198 (329)
T ss_dssp             TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTT
T ss_pred             cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcc
Confidence            99999999999998877777778877777777665422    1222334455666666 45554322   333333322 


Q ss_pred             --hccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCcc-
Q 046000          328 --SSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLM-  403 (470)
Q Consensus       328 --~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~-  403 (470)
                        ...++.+.+.+.-...........|++|+.+++++|.++.++...| .+++|+++++.+| +..+...+|.+|++|+ 
T Consensus       199 ~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~  277 (329)
T 3sb4_A          199 LQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAG  277 (329)
T ss_dssp             CCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred             cCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccE
Confidence              2335566555442211111112348999999999999999998888 7899999999988 7767788999999999 


Q ss_pred             EEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEc
Q 046000          404 TLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDL  455 (470)
Q Consensus       404 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l  455 (470)
                      .+++.+ .++.+.+..|.+|++|+++++++|.++...+.+|.++++|+.++.
T Consensus       278 ~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          278 TLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            999999 787777889999999999999999999888889999999998864

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=4.4e-17  Score=148.95  Aligned_cols=288  Identities=11%  Similarity=0.063  Sum_probs=192.0

Q ss_pred             CcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhh-------
Q 046000          134 HDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGII-------  206 (470)
Q Consensus       134 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------  206 (470)
                      +++++|.++++--. .-...+...+++|+.|++++|++...... ...++.++.+.+..+    .+|...|..       
T Consensus        25 ~~l~~L~l~g~i~~-~~~~~l~~~l~~L~~LdLs~n~i~~~~~~-~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~   98 (329)
T 3sb4_A           25 NSITHLTLTGKLNA-EDFRHLRDEFPSLKVLDISNAEIKMYSGK-AGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTK   98 (329)
T ss_dssp             HHCSEEEEEEEECH-HHHHHHHHSCTTCCEEEEEEEEECCEEES-SSSSGGGCCEEECTT----EECTTTTEEEETTEEE
T ss_pred             CceeEEEEeccccH-HHHHHHHHhhccCeEEecCcceeEEecCc-ccccccccccccccc----ccCHHHhccccccccc
Confidence            44666666654211 11111222267778888887777611111 112222344444444    445566666       


Q ss_pred             -hccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCc----CCCcchhhhcCccc
Q 046000          207 -LQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNN----FHDQIFPKYMNLTR  281 (470)
Q Consensus       207 -~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~----~~~~~~~~~~~~~~  281 (470)
                       +++|+.+.+.+ .+..+...+|.++++|+.++++++.+....+.+|.++.++..+......    ........|..+..
T Consensus        99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A           99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence             88999999988 7776677789999999999999998888888888888888777766521    11112233445666


Q ss_pred             cc-EEEccccc-cccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEE
Q 046000          282 LW-FLYLDNNK-FSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLS  359 (470)
Q Consensus       282 L~-~l~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~  359 (470)
                      |+ .+.+.... +.......-....++..+.+.+.-.. .....+......++.+++.+|.++......|..|.+|+.++
T Consensus       178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~  256 (329)
T 3sb4_A          178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK  256 (329)
T ss_dssp             CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred             cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence            66 44443321 11111111123456677776654221 22223333344599999999988866667899999999999


Q ss_pred             ccCccccCcccccc-ccCccc-EEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEc
Q 046000          360 VSENCLSGFMTSSF-SLSSLV-HLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLL  431 (470)
Q Consensus       360 l~~~~l~~~~~~~~-~~~~L~-~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  431 (470)
                      +.++ +..++...| .+++|+ ++.+.+ .+..+.+.+|.+|++|+.+++++|.+..+....|.+|++|+.++.
T Consensus       257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            9998 888888888 789999 999988 777677899999999999999999999888889999999999874

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.71  E-value=2.4e-17  Score=152.58  Aligned_cols=175  Identities=22%  Similarity=0.163  Sum_probs=85.5

Q ss_pred             cEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhc-CCCCccEEECCCCcccCCcchhHHhhhccccEEEcC
Q 046000          259 WFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLL-KSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMS  337 (470)
Q Consensus       259 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~  337 (470)
                      +.++++++.+.... ..+  .+.++.|++++|.+.+..+..+. .+++|+.|++++|.+.+                   
T Consensus        21 ~~l~c~~~~l~~iP-~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~-------------------   78 (361)
T 2xot_A           21 NILSCSKQQLPNVP-QSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-------------------   78 (361)
T ss_dssp             TEEECCSSCCSSCC-SSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE-------------------
T ss_pred             CEEEeCCCCcCccC-ccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc-------------------
Confidence            45666666554422 111  23455666666666544444444 55566666666655543                   


Q ss_pred             CCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeec
Q 046000          338 KNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGII  416 (470)
Q Consensus       338 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~  416 (470)
                            ..+..+..+++|+.|++++|.+..++...+ .+++|++|++++|++....+..+..+++|+.|++++|++....
T Consensus        79 ------i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~  152 (361)
T 2xot_A           79 ------ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP  152 (361)
T ss_dssp             ------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred             ------cChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence                  333334444555555555555544444333 4455555555555555444445555555555555555554332


Q ss_pred             chhh---hcCCCCcEEEccCcccCcccchhhccCCC--CCeEEccCcccc
Q 046000          417 SDQI---NESSNLRVLLLRGNYLEGPISNQFCQLRR--LGVMDLSHNRIN  461 (470)
Q Consensus       417 ~~~~---~~~~~L~~L~l~~n~i~~~~~~~~~~l~~--L~~l~l~~n~~~  461 (470)
                      +..+   ..+++|+.|+|++|+|+...+..+..++.  ++.|++++|++.
T Consensus       153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            2222   33455555555555555433344444444  245555555544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=6.1e-17  Score=136.21  Aligned_cols=150  Identities=15%  Similarity=0.182  Sum_probs=105.5

Q ss_pred             CCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEE
Q 046000          304 NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLY  382 (470)
Q Consensus       304 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~  382 (470)
                      ++|+.|++++|.+. .++ .+..+.. +++|++++|.+.  .+..+..+++|++|++++|.+.+.....+ .+++|++|+
T Consensus        44 ~~L~~L~l~~n~i~-~l~-~l~~l~~-L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           44 NSLTYITLANINVT-DLT-GIEYAHN-IKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HTCCEEEEESSCCS-CCT-TGGGCTT-CSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             CCccEEeccCCCcc-ChH-HHhcCCC-CCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            34444444444444 333 2333332 555555555433  22356678889999999988876444444 788999999


Q ss_pred             ccCCcccccCccchhcCCCccEEEcCCcc-ceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccc
Q 046000          383 VQRNDLSGTIPNALFRSSKLMTLDLRDNG-FSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRIN  461 (470)
Q Consensus       383 l~~~~l~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~  461 (470)
                      +++|++.+..+..+..+++|+.|++++|+ +.. ++ .+..+++|++|++++|++++ ++ .+..+++|+.|++++|+|.
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence            99999987778888899999999999998 664 44 58889999999999999985 33 7888999999999999986


Q ss_pred             c
Q 046000          462 G  462 (470)
Q Consensus       462 ~  462 (470)
                      +
T Consensus       195 ~  195 (197)
T 4ezg_A          195 G  195 (197)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.70  E-value=9e-17  Score=137.49  Aligned_cols=151  Identities=20%  Similarity=0.201  Sum_probs=85.2

Q ss_pred             cEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCC
Q 046000          259 WFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSK  338 (470)
Q Consensus       259 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~  338 (470)
                      +.++++++.+.... ..+  .++++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+.. +++|++++
T Consensus        14 ~~v~c~~~~l~~iP-~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~-L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLTEIP-TNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS-LNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCSSCC-SSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSS-CCEEECCS
T ss_pred             CEEEcCCCCcCcCC-Ccc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcC-CCEEECCC
Confidence            34555555554322 111  145666666666665544445556666666666666665444555555444 66666666


Q ss_pred             CcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccce
Q 046000          339 NFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFS  413 (470)
Q Consensus       339 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~  413 (470)
                      |.++...+..+..+++|+.|++++|.+..+++..+ .+++|++|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            66654444445556666666666666666554444 4566666666666666555555556666666666666653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.69  E-value=1.9e-16  Score=136.41  Aligned_cols=151  Identities=21%  Similarity=0.200  Sum_probs=89.7

Q ss_pred             CceeeccCCCCCCccc--cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccCccC
Q 046000           14 LEALDLSFNNINGTVE--SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYF   91 (470)
Q Consensus        14 L~~L~ls~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~   91 (470)
                      -+.++++++.+...+.  .+++++|++++|.+++..+..|.++++|++|+|++|.+....+..+..+++|++|++++|.+
T Consensus        21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l  100 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL  100 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence            4566777766665544  55666666666666666666666666666666666666644445556666666666666666


Q ss_pred             cCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEcccccc
Q 046000           92 EGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSF  171 (470)
Q Consensus        92 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i  171 (470)
                      + ..+...+..+                              ++|++|++++|.+. .+|..+ ..+++|+.|++++|.+
T Consensus       101 ~-~l~~~~~~~l------------------------------~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~L~~N~l  147 (229)
T 3e6j_A          101 T-VLPSAVFDRL------------------------------VHLKELFMCCNKLT-ELPRGI-ERLTHLTHLALDQNQL  147 (229)
T ss_dssp             C-CCCTTTTTTC------------------------------TTCCEEECCSSCCC-SCCTTG-GGCTTCSEEECCSSCC
T ss_pred             C-ccChhHhCcc------------------------------hhhCeEeccCCccc-ccCccc-ccCCCCCEEECCCCcC
Confidence            5 2232334444                              44555555555555 444433 3556666666666666


Q ss_pred             CCccCCCCCCCCcccEEeccCCcccC
Q 046000          172 TGNLQLPHSKHDFLHHLDVSSNNFTG  197 (470)
Q Consensus       172 ~~~~~~~~~~~~~L~~L~l~~~~~~~  197 (470)
                      .......+..+++|+.|++++|.+..
T Consensus       148 ~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          148 KSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CccCHHHHhCCCCCCEEEeeCCCccC
Confidence            55444555666666777776666553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.69  E-value=1.3e-16  Score=130.57  Aligned_cols=137  Identities=18%  Similarity=0.151  Sum_probs=111.8

Q ss_pred             cccEEEcCCCccc-CCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcC
Q 046000          330 YLEVLLMSKNFLK-GNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLR  408 (470)
Q Consensus       330 ~l~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~  408 (470)
                      .++.|++++|.+. +.+|..+..+++|+.|++++|.+.+. .....+++|++|++++|++.+..+..+..+++|+.|+++
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  103 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS  103 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence            3666666666665 45666677788999999999998877 444478999999999999987677777789999999999


Q ss_pred             Cccceeec-chhhhcCCCCcEEEccCcccCcccc---hhhccCCCCCeEEccCcccccccCCCc
Q 046000          409 DNGFSGII-SDQINESSNLRVLLLRGNYLEGPIS---NQFCQLRRLGVMDLSHNRINGSIPSCF  468 (470)
Q Consensus       409 ~n~l~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~l~l~~n~~~~~~p~~~  468 (470)
                      +|++.+.. +..+..+++|++|++++|++++..+   ..+..+++|+.|++++|.++ .+|.+-
T Consensus       104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~  166 (168)
T 2ell_A          104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDSD  166 (168)
T ss_dssp             SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSSS
T ss_pred             CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccccc
Confidence            99998642 2678899999999999999986555   58899999999999999988 677653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=2.1e-16  Score=132.10  Aligned_cols=128  Identities=23%  Similarity=0.239  Sum_probs=74.5

Q ss_pred             cEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCch-hhhccCCCeEEEccCccccCcccccc-ccCcccEEEcc
Q 046000          307 KELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPM-QLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQ  384 (470)
Q Consensus       307 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~  384 (470)
                      +.++++++.+. .+|..+..   .++.|++++|.+.+..+. .+..+++|++|++++|.++.+.+..+ .+++|++|+++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~---~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT---TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCCC---CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            55666666664 45543322   366666666666533332 25556666666666666665544443 55666666666


Q ss_pred             CCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc
Q 046000          385 RNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG  438 (470)
Q Consensus       385 ~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~  438 (470)
                      +|++.+..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|++.+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            666665555555666666666666666665555566666666666666666654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.68  E-value=1.7e-16  Score=146.92  Aligned_cols=154  Identities=23%  Similarity=0.234  Sum_probs=128.9

Q ss_pred             cEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhh-ccCCCeEEEccCccccCcccccc-ccCcccEEEcc
Q 046000          307 KELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLL-NHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQ  384 (470)
Q Consensus       307 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~  384 (470)
                      +.++++++.+. .+|..+   +..++.|++++|.+++..+..+. .+++|+.|++++|.+..++...+ .+++|++|+++
T Consensus        21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            46777777766 555533   33477888888888766666676 89999999999999999887766 78999999999


Q ss_pred             CCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhh---ccCCCCCeEEccCcccc
Q 046000          385 RNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQF---CQLRRLGVMDLSHNRIN  461 (470)
Q Consensus       385 ~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~---~~l~~L~~l~l~~n~~~  461 (470)
                      +|++....+..+..+++|+.|++++|++....+..|..+++|++|+|++|+++...+..+   ..+++|+.|++++|+++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            999997877889999999999999999998888999999999999999999997555555   67999999999999999


Q ss_pred             cccC
Q 046000          462 GSIP  465 (470)
Q Consensus       462 ~~~p  465 (470)
                      + +|
T Consensus       177 ~-l~  179 (361)
T 2xot_A          177 K-LP  179 (361)
T ss_dssp             C-CC
T ss_pred             c-cC
Confidence            4 44

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.67  E-value=1.2e-15  Score=130.52  Aligned_cols=137  Identities=18%  Similarity=0.158  Sum_probs=97.4

Q ss_pred             ccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecC
Q 046000          185 LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRS  264 (470)
Q Consensus       185 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  264 (470)
                      +++|++++|.+.+..+...+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+....+..|..+++|++|+++
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  113 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR  113 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence            45666666665533344444556677777777777765555667777777777777777776666667777777777777


Q ss_pred             CCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcc
Q 046000          265 HNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIP  321 (470)
Q Consensus       265 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  321 (470)
                      +|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus       114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            777777666677777888888888887776667777788888888888888765444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=1.4e-16  Score=140.23  Aligned_cols=165  Identities=22%  Similarity=0.265  Sum_probs=72.5

Q ss_pred             CCcCceeeccCCCCCCccc---cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEecc
Q 046000           11 LKNLEALDLSFNNINGTVE---SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLS   87 (470)
Q Consensus        11 ~~~L~~L~ls~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~   87 (470)
                      +++++.++++++.+.+...   +++|++|++++|.++. ++ .++.+++|++|++++|.+.+..+  +..+++|++|+++
T Consensus        18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            3344455555555543332   4455555555555543 22 34555555555555555543322  4555555555555


Q ss_pred             CccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEcc
Q 046000           88 NSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLT  167 (470)
Q Consensus        88 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~  167 (470)
                      +|.+.+ .+  .+.. ++|+.|++++|.+...        +.+..+++|++|++++|.++ .++  .+..+++|+.|+++
T Consensus        94 ~N~l~~-l~--~~~~-~~L~~L~L~~N~l~~~--------~~l~~l~~L~~L~Ls~N~i~-~~~--~l~~l~~L~~L~L~  158 (263)
T 1xeu_A           94 RNRLKN-LN--GIPS-ACLSRLFLDNNELRDT--------DSLIHLKNLEILSIRNNKLK-SIV--MLGFLSKLEVLDLH  158 (263)
T ss_dssp             SSCCSC-CT--TCCC-SSCCEEECCSSCCSBS--------GGGTTCTTCCEEECTTSCCC-BCG--GGGGCTTCCEEECT
T ss_pred             CCccCC-cC--cccc-CcccEEEccCCccCCC--------hhhcCcccccEEECCCCcCC-CCh--HHccCCCCCEEECC
Confidence            555442 11  1111 4444444444443311        12333444444444444444 222  13344444444444


Q ss_pred             ccccCCccCCCCCCCCcccEEeccCCccc
Q 046000          168 NNSFTGNLQLPHSKHDFLHHLDVSSNNFT  196 (470)
Q Consensus       168 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~  196 (470)
                      +|.+.+.  ..+..+++|+.|++++|.+.
T Consensus       159 ~N~i~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          159 GNEITNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             TSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             CCcCcch--HHhccCCCCCEEeCCCCccc
Confidence            4444432  33334444444444444433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=4.7e-16  Score=130.80  Aligned_cols=103  Identities=18%  Similarity=0.212  Sum_probs=51.5

Q ss_pred             ccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCc-ccccCccchhcCCCccEEEcC
Q 046000          331 LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRND-LSGTIPNALFRSSKLMTLDLR  408 (470)
Q Consensus       331 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~l~  408 (470)
                      +++|++++|.+++..+..+..+++|++|++++|.+.+.....+ .+++|++|++++|. +.+ .+ .+..+++|+.|+++
T Consensus        90 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~  167 (197)
T 4ezg_A           90 LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQ  167 (197)
T ss_dssp             CCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECT
T ss_pred             CCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECC
Confidence            3333333333333333334445555555555555544222222 45556666666665 432 22 45566666666666


Q ss_pred             CccceeecchhhhcCCCCcEEEccCcccC
Q 046000          409 DNGFSGIISDQINESSNLRVLLLRGNYLE  437 (470)
Q Consensus       409 ~n~l~~~~~~~~~~~~~L~~L~l~~n~i~  437 (470)
                      +|++.+. + .+..+++|++|++++|+|.
T Consensus       168 ~n~i~~~-~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          168 FDGVHDY-R-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             TBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred             CCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence            6666642 2 4566666777777766664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.64  E-value=6e-16  Score=123.84  Aligned_cols=128  Identities=20%  Similarity=0.207  Sum_probs=107.1

Q ss_pred             ccccEEEcCCCccc-CCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEc
Q 046000          329 SYLEVLLMSKNFLK-GNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDL  407 (470)
Q Consensus       329 ~~l~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l  407 (470)
                      ..++.+++++|.+. +.+|..+..+++|+.|++++|.+.+. .....+++|++|++++|.+.+..|..+..+++|+.|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            34778888888876 56777778889999999999998887 33447899999999999998767787878999999999


Q ss_pred             CCccceee-cchhhhcCCCCcEEEccCcccCcccc---hhhccCCCCCeEEccC
Q 046000          408 RDNGFSGI-ISDQINESSNLRVLLLRGNYLEGPIS---NQFCQLRRLGVMDLSH  457 (470)
Q Consensus       408 ~~n~l~~~-~~~~~~~~~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~l~l~~  457 (470)
                      ++|++.+. .+..+..+++|++|++++|++++..+   ..+..+++|+.|++++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999864 34778999999999999999987655   5789999999999864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=1.6e-17  Score=161.85  Aligned_cols=105  Identities=23%  Similarity=0.299  Sum_probs=55.2

Q ss_pred             CeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCc
Q 046000          355 LQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGN  434 (470)
Q Consensus       355 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  434 (470)
                      |+.|++++|.++.++. ...+++|++|++++|.++ .+|..+..+++|+.|++++|++++ +| .+..+++|++|+|++|
T Consensus       443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN  518 (567)
T ss_dssp             CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             ceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCC
Confidence            5555555555555443 334555555555555555 444455555555555555555553 33 4555555555555555


Q ss_pred             ccCccc-chhhccCCCCCeEEccCcccccc
Q 046000          435 YLEGPI-SNQFCQLRRLGVMDLSHNRINGS  463 (470)
Q Consensus       435 ~i~~~~-~~~~~~l~~L~~l~l~~n~~~~~  463 (470)
                      ++++.. |..+..+++|+.|++++|++++.
T Consensus       519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence            555443 55555555555555555555533

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=2.7e-17  Score=160.33  Aligned_cols=197  Identities=18%  Similarity=0.091  Sum_probs=157.3

Q ss_pred             cCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccc-------------cccccchhhcCCCCccEEE-CCCCcccC
Q 046000          253 TGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNK-------------FSGKIEDGLLKSNQLKELD-MSNNMLSG  318 (470)
Q Consensus       253 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~~  318 (470)
                      ..+++|+.|++++|.+. .++..++.+++|+.|+++++.             ..+..+..+..+++|+.|+ ++.+.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            56789999999999886 567888899999999987664             3344556677778888888 5555432 


Q ss_pred             Ccch------hHHhh-hccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCccccc
Q 046000          319 HIPH------WIANF-SSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGT  391 (470)
Q Consensus       319 ~~~~------~~~~~-~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~  391 (470)
                      .++.      .+... ...++.|++++|.+++ +|. +..+++|+.|++++|.++.+|.....+++|++|++++|.+++ 
T Consensus       424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-  500 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-  500 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred             hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-
Confidence            2221      11111 1238899999999985 666 899999999999999999888776689999999999999996 


Q ss_pred             CccchhcCCCccEEEcCCccceeec-chhhhcCCCCcEEEccCcccCcccc---hhhccCCCCCeEEc
Q 046000          392 IPNALFRSSKLMTLDLRDNGFSGII-SDQINESSNLRVLLLRGNYLEGPIS---NQFCQLRRLGVMDL  455 (470)
Q Consensus       392 ~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~l~l  455 (470)
                      +| .+..+++|+.|++++|++++.. |..+..+++|+.|++++|++++..+   ..+..+|+|+.|++
T Consensus       501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            55 7899999999999999999776 8999999999999999999986544   33555899999975

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.63  E-value=2e-15  Score=126.05  Aligned_cols=126  Identities=26%  Similarity=0.305  Sum_probs=79.9

Q ss_pred             cEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccC
Q 046000          307 KELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQR  385 (470)
Q Consensus       307 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~  385 (470)
                      +.++++++.+. .+|..+   +..++.|++++|.++ .+|..+..+++|+.|++++|.++.++...+ .+++|++|++++
T Consensus        13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            45666666665 455432   233666777776665 555666666667777777776666665544 566666777766


Q ss_pred             CcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccC
Q 046000          386 NDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLE  437 (470)
Q Consensus       386 ~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~  437 (470)
                      |+++...+..+..+++|+.|++++|++....+..+..+++|+.|++++|++.
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            6666555566666666666666666666554455666666666666666664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.63  E-value=9.4e-15  Score=136.16  Aligned_cols=241  Identities=11%  Similarity=0.109  Sum_probs=155.0

Q ss_pred             cCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcc
Q 046000          209 KLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLD  288 (470)
Q Consensus       209 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  288 (470)
                      +|+.+.+..+ +..+...+|.++ +|+.+.+.. .+......+|.+|.+|+.+++..+.+.......|. +.+|+.+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp  211 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP  211 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence            4555555433 332333445443 466666654 44445556666666666666666665554444454 4566666665


Q ss_pred             ccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCcccc--
Q 046000          289 NNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLS--  366 (470)
Q Consensus       289 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--  366 (470)
                      .+ +......+|..+++|+.+.+.++ +. .+....+.. ..++.+.+.. .+......+|..|++|+.+++.++.+.  
T Consensus       212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~  286 (401)
T 4fdw_A          212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDD  286 (401)
T ss_dssp             TT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred             Cc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCC
Confidence            33 44445566666777777777654 32 222222222 2377777743 343344667888888999888887654  


Q ss_pred             ---Ccccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccch
Q 046000          367 ---GFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISN  442 (470)
Q Consensus       367 ---~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~  442 (470)
                         .++...| .+++|+.+.+.+ .+..+...+|.+|++|+.+.|.++ ++.+....|.+| +|+++++++|.+......
T Consensus       287 ~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~  363 (401)
T 4fdw_A          287 PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK  363 (401)
T ss_dssp             TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred             cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence               4555566 688899999884 466566778888899999999665 666667788888 899999999888777777


Q ss_pred             hhccCC-CCCeEEccCcccc
Q 046000          443 QFCQLR-RLGVMDLSHNRIN  461 (470)
Q Consensus       443 ~~~~l~-~L~~l~l~~n~~~  461 (470)
                      .|.+++ .++.+.+..+.+.
T Consensus       364 ~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          364 VWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             SCCCSCTTCCEEEECGGGHH
T ss_pred             cccCCCCCccEEEeCHHHHH
Confidence            788774 7788888776654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.63  E-value=2.4e-15  Score=124.17  Aligned_cols=131  Identities=21%  Similarity=0.266  Sum_probs=70.1

Q ss_pred             cEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCc
Q 046000          332 EVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDN  410 (470)
Q Consensus       332 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n  410 (470)
                      +.++++++.+. .+|..+  .++|+.|++++|.+..++...+ .+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus        10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            34444444443 233222  2455555565555555554443 4555666666666555444444555566666666666


Q ss_pred             cceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccC
Q 046000          411 GFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIP  465 (470)
Q Consensus       411 ~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p  465 (470)
                      ++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            6554444445555666666666666654444445555666666666666554443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.62  E-value=1.5e-14  Score=135.46  Aligned_cols=101  Identities=15%  Similarity=0.163  Sum_probs=64.1

Q ss_pred             hhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCC
Q 046000          348 QLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNL  426 (470)
Q Consensus       348 ~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L  426 (470)
                      .+..+.+|+.+.+..+ +..++...| .+++|+++.+..+ +..+...+|.+|.+|+.+++..+ +..+-...|.+|++|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence            3455667777776543 555555555 5677777777543 54455567777777777777766 555556677777778


Q ss_pred             cEEEccCcccCcccchhhccCCCCCeE
Q 046000          427 RVLLLRGNYLEGPISNQFCQLRRLGVM  453 (470)
Q Consensus       427 ~~L~l~~n~i~~~~~~~~~~l~~L~~l  453 (470)
                      +++++..+ ++ .+...|.+++.|+.+
T Consensus       369 ~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          369 KKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             CEEEECCC-CE-EhhheecCCCCCcEE
Confidence            77777654 22 234566667666654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.62  E-value=1.2e-15  Score=127.61  Aligned_cols=108  Identities=24%  Similarity=0.326  Sum_probs=52.2

Q ss_pred             CccEEECCCCcccCCcch-hHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEE
Q 046000          305 QLKELDMSNNMLSGHIPH-WIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLY  382 (470)
Q Consensus       305 ~L~~L~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~  382 (470)
                      ++++|++++|.+.+..+. .+..+.. +++|++++|.+++..|..+..+++|+.|++++|.++.++...+ .+++|++|+
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPH-LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTT-CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCEEECCCCcCCccCCccccccCCC-CCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence            455555555554422222 1333332 5555555555554444445555555555555555554444433 445555555


Q ss_pred             ccCCcccccCccchhcCCCccEEEcCCccce
Q 046000          383 VQRNDLSGTIPNALFRSSKLMTLDLRDNGFS  413 (470)
Q Consensus       383 l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~  413 (470)
                      +++|++++..+..+..+++|+.|++++|++.
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            5555555444444555555555555555544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.59  E-value=5.4e-14  Score=131.77  Aligned_cols=230  Identities=15%  Similarity=0.139  Sum_probs=151.0

Q ss_pred             chhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCC
Q 046000          225 PSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSN  304 (470)
Q Consensus       225 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~  304 (470)
                      ..+|.++.+|+.+.+.++. ......+|.++.+|+.+.+..+ +.......|.++..|+.+.+..+...  .........
T Consensus       155 ~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~  230 (394)
T 4fs7_A          155 DEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKT  230 (394)
T ss_dssp             TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTC
T ss_pred             hhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccC
Confidence            3456666777777765542 3345566667777777766554 33334445666666666665544322  223334456


Q ss_pred             CccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEc
Q 046000          305 QLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYV  383 (470)
Q Consensus       305 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l  383 (470)
                      +|+.+.+.... . .+....+.....++.+.+..+... .....+..+..++.+......+.   ...+ .+.+|+++.+
T Consensus       231 ~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l  304 (394)
T 4fs7_A          231 GVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKL  304 (394)
T ss_dssp             CCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEE
T ss_pred             CCceEEECCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccccccccccc
Confidence            67777765432 1 222222222223667777655432 44556778888988888766543   3333 6899999999


Q ss_pred             cCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccc
Q 046000          384 QRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGS  463 (470)
Q Consensus       384 ~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~  463 (470)
                      .++ +..+...+|.+|.+|+.++|.++ ++.+-...|.+|.+|+.+++..+ ++.....+|.+|++|+.+++..+ ++ .
T Consensus       305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~  379 (394)
T 4fs7_A          305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-Q  379 (394)
T ss_dssp             CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-G
T ss_pred             ccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-E
Confidence            765 55566788999999999999865 66666788999999999999877 77778889999999999999765 33 3


Q ss_pred             cCCCcc
Q 046000          464 IPSCFT  469 (470)
Q Consensus       464 ~p~~~~  469 (470)
                      +..+|.
T Consensus       380 ~~~~F~  385 (394)
T 4fs7_A          380 YRYDFE  385 (394)
T ss_dssp             GGGGBC
T ss_pred             hhheec
Confidence            445554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.59  E-value=6e-14  Score=130.73  Aligned_cols=249  Identities=10%  Similarity=0.066  Sum_probs=191.9

Q ss_pred             hccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEE
Q 046000          207 LQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLY  286 (470)
Q Consensus       207 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~  286 (470)
                      +..++.+.+... +..+...+|.++ +|+.+.+..+ +......+|.++ +|+.+.+.. .+.......|..+++|+.++
T Consensus       112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            456666666543 333455677775 7999999876 666777888885 799999986 56666667899999999999


Q ss_pred             ccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCcccc
Q 046000          287 LDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLS  366 (470)
Q Consensus       287 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  366 (470)
                      +.++++.......|. +.+|+.+.+..+ +. .++...+.....|+.+.+..+ +......+|.. .+|+.+.+ .+.+.
T Consensus       187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~  260 (401)
T 4fdw_A          187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVT  260 (401)
T ss_dssp             CTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCC
T ss_pred             cCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCcc
Confidence            999988855555555 689999999865 54 444433333334999999875 44344455665 78999999 45677


Q ss_pred             Ccccccc-ccCcccEEEccCCccc-----ccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCccc
Q 046000          367 GFMTSSF-SLSSLVHLYVQRNDLS-----GTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPI  440 (470)
Q Consensus       367 ~~~~~~~-~~~~L~~L~l~~~~l~-----~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~  440 (470)
                      .++...| .+++|+++.+.++.+.     .+...+|.+|++|+.+++.+ .+..+-...|.+|++|+.+.+..+ ++...
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~  338 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN  338 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred             EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence            7877777 7899999999988764     46678899999999999995 477777788999999999999665 77677


Q ss_pred             chhhccCCCCCeEEccCcccccccCCCcc
Q 046000          441 SNQFCQLRRLGVMDLSHNRINGSIPSCFT  469 (470)
Q Consensus       441 ~~~~~~l~~L~~l~l~~n~~~~~~p~~~~  469 (470)
                      ..+|.++ .|+.+++.+|......+..|.
T Consensus       339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~  366 (401)
T 4fdw_A          339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWY  366 (401)
T ss_dssp             TTSSSSS-CCCEEEECCSSCCBCCCSSCC
T ss_pred             HHhCCCC-CCCEEEEcCCCCccccccccc
Confidence            8899999 999999999998876666664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=9.2e-15  Score=119.53  Aligned_cols=134  Identities=23%  Similarity=0.193  Sum_probs=104.5

Q ss_pred             CCCCccEEECCCCccc-CCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCccc
Q 046000          302 KSNQLKELDMSNNMLS-GHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLV  379 (470)
Q Consensus       302 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~  379 (470)
                      ..++++.|++++|.+. +.+|..+..+.. ++.|++++|.+.+.  ..+..+++|+.|++++|.+....+..+ .+++|+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~-L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVN-LEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGG-CCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCC-CCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            3467788888888776 566666555555 88888888887644  667788899999999999888544444 589999


Q ss_pred             EEEccCCcccccCc-cchhcCCCccEEEcCCccceeecc---hhhhcCCCCcEEEccCcccCc
Q 046000          380 HLYVQRNDLSGTIP-NALFRSSKLMTLDLRDNGFSGIIS---DQINESSNLRVLLLRGNYLEG  438 (470)
Q Consensus       380 ~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l~~n~i~~  438 (470)
                      +|++++|.+++... ..+..+++|+.|++++|++....+   ..+..+++|++|++++|.+..
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            99999999985432 678889999999999999986544   478889999999999998873

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.55  E-value=3e-16  Score=132.13  Aligned_cols=153  Identities=20%  Similarity=0.258  Sum_probs=109.9

Q ss_pred             CCCccEEECCCCcccCCcch------hHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccC
Q 046000          303 SNQLKELDMSNNMLSGHIPH------WIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLS  376 (470)
Q Consensus       303 ~~~L~~L~l~~~~~~~~~~~------~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~  376 (470)
                      ...++.++++.+.+.+..+.      .+..+.. ++.|++++|.+.+ +| .+..+++|+.|++++|.+.+++.....++
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~-L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~   93 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKA-CKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVAD   93 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTT-CSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCC-CCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCC
Confidence            33444444444444433333      5665555 7788888777764 55 67788888888888888887765444668


Q ss_pred             cccEEEccCCcccccCccchhcCCCccEEEcCCccceeecc-hhhhcCCCCcEEEccCcccCcccch----------hhc
Q 046000          377 SLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIIS-DQINESSNLRVLLLRGNYLEGPISN----------QFC  445 (470)
Q Consensus       377 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~----------~~~  445 (470)
                      +|++|++++|++.+. + .+..+++|+.|++++|++..... ..+..+++|++|++++|++.+..|.          .+.
T Consensus        94 ~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~  171 (198)
T 1ds9_A           94 TLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             HCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred             cCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence            899999998888753 3 57788889999999998875332 4678889999999999988765443          377


Q ss_pred             cCCCCCeEEccCccccc
Q 046000          446 QLRRLGVMDLSHNRING  462 (470)
Q Consensus       446 ~l~~L~~l~l~~n~~~~  462 (470)
                      .+++|+.|+  +|+++.
T Consensus       172 ~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          172 RLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HCSSCSEEC--CGGGTT
T ss_pred             hCCCcEEEC--CcccCH
Confidence            889999886  777764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.54  E-value=1.8e-14  Score=118.63  Aligned_cols=105  Identities=16%  Similarity=0.200  Sum_probs=61.8

Q ss_pred             CCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecch--hhhcCCCCcEEEc
Q 046000          354 SLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISD--QINESSNLRVLLL  431 (470)
Q Consensus       354 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~--~~~~~~~L~~L~l  431 (470)
                      +|+.|++++|.++++ .....+++|++|++++|.+++..+..+..+++|+.|++++|++.. ++.  .+..+++|++|++
T Consensus        43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l  120 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCI  120 (176)
T ss_dssp             CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEEC
T ss_pred             CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEe
Confidence            566666666655554 222255666666666666664444444566666666666666653 333  5566666666666


Q ss_pred             cCcccCcccch----hhccCCCCCeEEccCcccc
Q 046000          432 RGNYLEGPISN----QFCQLRRLGVMDLSHNRIN  461 (470)
Q Consensus       432 ~~n~i~~~~~~----~~~~l~~L~~l~l~~n~~~  461 (470)
                      ++|++.. ++.    .+..+++|+.|++++|.+.
T Consensus       121 ~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          121 LRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             cCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            6666653 333    3666666666666666554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.54  E-value=1.4e-15  Score=153.05  Aligned_cols=191  Identities=19%  Similarity=0.189  Sum_probs=111.4

Q ss_pred             CcccEEecCCCcCCCcchhhhcCcccccE-----EEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhcc
Q 046000          256 VSLWFLDRSHNNFHDQIFPKYMNLTRLWF-----LYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSY  330 (470)
Q Consensus       256 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~-----l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  330 (470)
                      +.+..|++..+.+.... ..+.....|+.     +++..+.+. ..+..+..++.|+.|++++|.+. .++..++.+.. 
T Consensus       173 ~~~~~l~L~~n~~~~~~-~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~-  248 (727)
T 4b8c_D          173 PLTPKIELFANGKDEAN-QALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF-  248 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS-
T ss_pred             CccceEEeeCCCCCcch-hhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC-
Confidence            45677778777665422 22212222222     222233333 44566778889999999999887 77777776655 


Q ss_pred             ccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCc
Q 046000          331 LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDN  410 (470)
Q Consensus       331 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n  410 (470)
                      |+.|++++|.++ .+|..+..+++|+.|+|++|.++.++.....+++|++|+|++|.++ .+|..+..+++|+.|+|++|
T Consensus       249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred             CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence            889999999888 7788888889999999999998887776668889999999999887 66777888899999999999


Q ss_pred             cceeecchhhhcCC-CCcEEEccCcccCcccchhhccCCCCCeEEccCc
Q 046000          411 GFSGIISDQINESS-NLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHN  458 (470)
Q Consensus       411 ~l~~~~~~~~~~~~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n  458 (470)
                      ++.+.+|..+..+. .+..+++++|.+.+.+|..      |+.|+++.|
T Consensus       327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n  369 (727)
T 4b8c_D          327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD  369 (727)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred             ccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence            98877777765542 2234778888888766654      345566655

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.54  E-value=4.7e-15  Score=149.18  Aligned_cols=184  Identities=20%  Similarity=0.126  Sum_probs=94.4

Q ss_pred             ccccEEEccccccccccchhhcCCCCccEEE-----CCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCC
Q 046000          280 TRLWFLYLDNNKFSGKIEDGLLKSNQLKELD-----MSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGS  354 (470)
Q Consensus       280 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~-----l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~  354 (470)
                      +.++.+.+.++.+... +..+.....|+.+.     +..+.+. ..+..+..+.. ++.|++++|.+. .++..+..+++
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~-L~~L~Ls~n~l~-~l~~~~~~l~~  248 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQL-WHALDLSNLQIF-NISANIFKYDF  248 (727)
T ss_dssp             ---------------------------------------------------CCCC-CCEEECTTSCCS-CCCGGGGGCCS
T ss_pred             CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCC-CcEEECCCCCCC-CCChhhcCCCC
Confidence            5567777777666532 22222222222222     2223332 22333444443 777777777776 55655667777


Q ss_pred             CeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCc
Q 046000          355 LQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGN  434 (470)
Q Consensus       355 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  434 (470)
                      |+.|+|++|.++.++.....+++|++|+|++|.++ .+|..+..+++|+.|+|++|.+. .+|..|..+++|++|+|++|
T Consensus       249 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             CSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred             CCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence            77777777777766655556777777777777777 55666777777777777777776 45666777777777777777


Q ss_pred             ccCcccchhhccCCC-CCeEEccCcccccccCCCcc
Q 046000          435 YLEGPISNQFCQLRR-LGVMDLSHNRINGSIPSCFT  469 (470)
Q Consensus       435 ~i~~~~~~~~~~l~~-L~~l~l~~n~~~~~~p~~~~  469 (470)
                      ++++.+|..+..+.. +..+++++|.+++.+|..+.
T Consensus       327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~  362 (727)
T 4b8c_D          327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERR  362 (727)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred             ccCCCChHHHhhcchhhhHHhhccCcccCcCccccc
Confidence            777766666654322 12356777777777776553

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=4.7e-14  Score=117.73  Aligned_cols=126  Identities=21%  Similarity=0.213  Sum_probs=63.8

Q ss_pred             EEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccc
Q 046000          333 VLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGF  412 (470)
Q Consensus       333 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l  412 (470)
                      .++++++.++ .+|..+  .++++.|++++|.+..++.....+++|++|++++|.+++..+..|..+++|+.|++++|++
T Consensus        14 ~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             EEECTTSCCS-SCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            4455555544 333332  2355555555555554443222455555555555555544444555555555555555555


Q ss_pred             eeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccc
Q 046000          413 SGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRIN  461 (470)
Q Consensus       413 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~  461 (470)
                      ....+..|..+++|++|+|++|+++...+..+..+++|+.|++++|++.
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            5444444555555555555555555444444555555555555555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.52  E-value=8.9e-14  Score=114.68  Aligned_cols=131  Identities=21%  Similarity=0.240  Sum_probs=95.9

Q ss_pred             cEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccC
Q 046000          307 KELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQR  385 (470)
Q Consensus       307 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~  385 (470)
                      +.++++++.+. .+|..+   ...++.|++++|.+.+..+..+..+++|++|++++|.+..++...+ .+++|++|++++
T Consensus        10 ~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            45666666555 344322   2347777777777765555566778888888888888887777664 678888888888


Q ss_pred             CcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccc
Q 046000          386 NDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPIS  441 (470)
Q Consensus       386 ~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~  441 (470)
                      |.+++..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|++.+..+
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            88886666677788888888888888886666667788888888888888875433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.51  E-value=7.1e-14  Score=114.11  Aligned_cols=105  Identities=22%  Similarity=0.256  Sum_probs=55.6

Q ss_pred             eEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcc
Q 046000          356 QLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNY  435 (470)
Q Consensus       356 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  435 (470)
                      +.++++++.++.++...  .++|++|++++|.+.+..+..+..+++|+.|++++|+++...+..|..+++|++|+|++|+
T Consensus        12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            44555555555544433  2455555555555554445555555555555555555554444444555555555555555


Q ss_pred             cCcccchhhccCCCCCeEEccCccccc
Q 046000          436 LEGPISNQFCQLRRLGVMDLSHNRING  462 (470)
Q Consensus       436 i~~~~~~~~~~l~~L~~l~l~~n~~~~  462 (470)
                      +++..+..+..+++|+.|++++|+++.
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           90 LKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             cCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            554444445555555555555555553

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.50  E-value=7e-14  Score=111.72  Aligned_cols=100  Identities=22%  Similarity=0.178  Sum_probs=56.5

Q ss_pred             ccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCccccc-CccchhcCCCccEEEcC
Q 046000          331 LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGT-IPNALFRSSKLMTLDLR  408 (470)
Q Consensus       331 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~-~~~~l~~~~~L~~L~l~  408 (470)
                      ++.|++++|.+.+.  ..+..+++|++|++++|.+.+..+..+ .+++|++|++++|++++. .+..+..+++|+.|+++
T Consensus        44 L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~  121 (149)
T 2je0_A           44 LEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF  121 (149)
T ss_dssp             CCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECT
T ss_pred             CcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCc
Confidence            44444444443322  334455666666666666655322222 466666666666666543 23556666777777777


Q ss_pred             Cccceeecc---hhhhcCCCCcEEEcc
Q 046000          409 DNGFSGIIS---DQINESSNLRVLLLR  432 (470)
Q Consensus       409 ~n~l~~~~~---~~~~~~~~L~~L~l~  432 (470)
                      +|++++..+   ..+..+++|++|+++
T Consensus       122 ~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          122 NCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCcccchHHHHHHHHHHCCCcccccCC
Confidence            777665443   356667777777665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=2.4e-13  Score=111.91  Aligned_cols=114  Identities=15%  Similarity=0.135  Sum_probs=97.2

Q ss_pred             hhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcE
Q 046000          349 LLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRV  428 (470)
Q Consensus       349 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  428 (470)
                      +..+++|+.|++++|.+..++......++|++|++++|.+.+.  ..+..+++|+.|++++|++.+..+..+..+++|++
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            4568899999999999998754222345999999999999865  67889999999999999999766666799999999


Q ss_pred             EEccCcccCcccch--hhccCCCCCeEEccCcccccccCC
Q 046000          429 LLLRGNYLEGPISN--QFCQLRRLGVMDLSHNRINGSIPS  466 (470)
Q Consensus       429 L~l~~n~i~~~~~~--~~~~l~~L~~l~l~~n~~~~~~p~  466 (470)
                      |++++|+++. ++.  .+..+++|+.|++++|+++ .+|.
T Consensus        93 L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~  130 (176)
T 1a9n_A           93 LILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKH  130 (176)
T ss_dssp             EECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTT
T ss_pred             EECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHh
Confidence            9999999974 555  8899999999999999998 5665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.47  E-value=2.4e-13  Score=111.30  Aligned_cols=104  Identities=18%  Similarity=0.217  Sum_probs=50.7

Q ss_pred             eEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcc
Q 046000          356 QLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNY  435 (470)
Q Consensus       356 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  435 (470)
                      +.++++++.+..++...  .++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+++|++|+|++|+
T Consensus        15 ~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            34455555554444433  1445555555555554444445555555555555555554333334455555555555555


Q ss_pred             cCcccchhhccCCCCCeEEccCcccc
Q 046000          436 LEGPISNQFCQLRRLGVMDLSHNRIN  461 (470)
Q Consensus       436 i~~~~~~~~~~l~~L~~l~l~~n~~~  461 (470)
                      ++...+..+..+++|+.|++++|++.
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             cceeCHHHhccccCCCEEEeCCCCcc
Confidence            55433334555555555555555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.46  E-value=1.1e-14  Score=134.29  Aligned_cols=158  Identities=18%  Similarity=0.141  Sum_probs=89.5

Q ss_pred             CCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhh-----hccCCCeEEEccCccccCcccccc-----
Q 046000          304 NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQL-----LNHGSLQLLSVSENCLSGFMTSSF-----  373 (470)
Q Consensus       304 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~l~~~~~~~~-----  373 (470)
                      ++|++|++++|.+.......+......++.|++++|.++......+     ...++|++|++++|.+++.+...+     
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            3555555555555433333333333335566666665543222222     134667777777777665433222     


Q ss_pred             ccCcccEEEccCCcccccC----ccchhcCCCccEEEcCCccceee----cchhhhcCCCCcEEEccCcccCcccchhhc
Q 046000          374 SLSSLVHLYVQRNDLSGTI----PNALFRSSKLMTLDLRDNGFSGI----ISDQINESSNLRVLLLRGNYLEGPISNQFC  445 (470)
Q Consensus       374 ~~~~L~~L~l~~~~l~~~~----~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  445 (470)
                      ..++|++|++++|.+.+..    ...+...++|+.|++++|.+.+.    +...+..+++|++|+|++|+|++.....+.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~  260 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR  260 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence            4677888888888776432    34556667888888888887643    334455678888888888888765555555


Q ss_pred             cCCC-----CCeEE--ccCcccc
Q 046000          446 QLRR-----LGVMD--LSHNRIN  461 (470)
Q Consensus       446 ~l~~-----L~~l~--l~~n~~~  461 (470)
                      .+..     |+.+.  +.+|.+.
T Consensus       261 ~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          261 DLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HCC------CEEECCCC----CH
T ss_pred             HHhcCCCccchhhHhhhcCCccC
Confidence            4421     55665  5555554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.45  E-value=5.6e-15  Score=124.26  Aligned_cols=133  Identities=23%  Similarity=0.233  Sum_probs=101.6

Q ss_pred             hhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcc
Q 046000          299 GLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSL  378 (470)
Q Consensus       299 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L  378 (470)
                      .+..+++|++|++++|.+.+ ++ .+..+.. ++.|++++|.+. .+|..+..+++|+.|++++|.+.+++ ....+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~-L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMEN-LRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTT-CCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCC-CCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCC
Confidence            66777788888888887763 55 5555555 888888888877 56666777788999999999888765 33367899


Q ss_pred             cEEEccCCcccccCc-cchhcCCCccEEEcCCccceeecch----------hhhcCCCCcEEEccCcccCc
Q 046000          379 VHLYVQRNDLSGTIP-NALFRSSKLMTLDLRDNGFSGIISD----------QINESSNLRVLLLRGNYLEG  438 (470)
Q Consensus       379 ~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~----------~~~~~~~L~~L~l~~n~i~~  438 (470)
                      ++|++++|.+.+... ..+..+++|+.|++++|++.+..|.          .+..+++|+.|+  +++++.
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            999999999875433 4678889999999999998765443          378899999887  777764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.41  E-value=2.2e-11  Score=114.00  Aligned_cols=123  Identities=15%  Similarity=0.181  Sum_probs=69.3

Q ss_pred             ccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCC
Q 046000          331 LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRD  409 (470)
Q Consensus       331 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~  409 (470)
                      ++.+.+...... .....+..|+.|+.+.+. +.+..++...| .+.+|+++.+..+ ++.+...+|.+|.+|+.+.|.+
T Consensus       267 L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~  343 (394)
T 4gt6_A          267 LASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS  343 (394)
T ss_dssp             CCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT
T ss_pred             ccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc
Confidence            455554433221 233455667777777774 34555666666 5677777777643 4445556777777777777765


Q ss_pred             ccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCccc
Q 046000          410 NGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRI  460 (470)
Q Consensus       410 n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~  460 (470)
                      + ++.+-...|.+|++|+.+++.++...   ...+..+..|+.+.+..+.+
T Consensus       344 s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          344 S-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             T-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             c-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            4 55455566777777777777776543   24556667777777765543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.39  E-value=1.2e-13  Score=127.39  Aligned_cols=161  Identities=14%  Similarity=0.152  Sum_probs=124.6

Q ss_pred             CCCccEEECCCCcccCCcchhHHhh----hccccEEEcCCCcccCCCchh-hhccCCCeEEEccCccccCcccccc----
Q 046000          303 SNQLKELDMSNNMLSGHIPHWIANF----SSYLEVLLMSKNFLKGNIPMQ-LLNHGSLQLLSVSENCLSGFMTSSF----  373 (470)
Q Consensus       303 ~~~L~~L~l~~~~~~~~~~~~~~~~----~~~l~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~----  373 (470)
                      .+.++.|++++|.+.......++..    ...++.|++++|.++...... ...+++|+.|++++|.+++.+...+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            4678999999999875555555554    235999999999986433333 3356789999999999987655443    


Q ss_pred             --ccCcccEEEccCCccccc----CccchhcCCCccEEEcCCccceee----cchhhhcCCCCcEEEccCcccCcc----
Q 046000          374 --SLSSLVHLYVQRNDLSGT----IPNALFRSSKLMTLDLRDNGFSGI----ISDQINESSNLRVLLLRGNYLEGP----  439 (470)
Q Consensus       374 --~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~i~~~----  439 (470)
                        ..++|++|++++|.+++.    ++.++..+++|++|+|++|.+.+.    +...+..+++|++|+|++|.|++.    
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence              358899999999999753    334557789999999999998753    355677889999999999999863    


Q ss_pred             cchhhccCCCCCeEEccCcccccc
Q 046000          440 ISNQFCQLRRLGVMDLSHNRINGS  463 (470)
Q Consensus       440 ~~~~~~~l~~L~~l~l~~n~~~~~  463 (470)
                      ++..+...+.|+.|++++|+|+..
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHH
Confidence            445566789999999999999753

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.37  E-value=5.6e-11  Score=111.24  Aligned_cols=112  Identities=12%  Similarity=0.189  Sum_probs=91.1

Q ss_pred             CchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcC
Q 046000          345 IPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINES  423 (470)
Q Consensus       345 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~  423 (470)
                      ...+|..|..|+.+.+.... ..++...+ .++.|+.+.+. +.+..+...+|.+|.+|+.++|.++ ++.+-...|.+|
T Consensus       257 ~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C  333 (394)
T 4gt6_A          257 ETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC  333 (394)
T ss_dssp             CTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred             ccceeeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence            34568889999999997643 34555555 78999999996 4555566788999999999999876 665667889999


Q ss_pred             CCCcEEEccCcccCcccchhhccCCCCCeEEccCccc
Q 046000          424 SNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRI  460 (470)
Q Consensus       424 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~  460 (470)
                      .+|+++.+..+ ++.....+|.+|++|+.+++.++..
T Consensus       334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          334 EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence            99999999765 7767788999999999999998754

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.35  E-value=3e-12  Score=104.41  Aligned_cols=105  Identities=20%  Similarity=0.251  Sum_probs=63.0

Q ss_pred             ccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCC
Q 046000          331 LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRD  409 (470)
Q Consensus       331 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~  409 (470)
                      .+.++++++.++ .+|..+  .+.++.|++++|.++.+++..+ .+++|++|++++|++.+..+..+..+++|+.|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            345555555554 344433  2566666666666666655444 566666666666666655555556666666666666


Q ss_pred             ccceeecchhhhcCCCCcEEEccCcccCc
Q 046000          410 NGFSGIISDQINESSNLRVLLLRGNYLEG  438 (470)
Q Consensus       410 n~l~~~~~~~~~~~~~L~~L~l~~n~i~~  438 (470)
                      |++....++.+..+++|++|+|++|++..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            66665555556666666666666666653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.33  E-value=5.2e-12  Score=103.31  Aligned_cols=103  Identities=22%  Similarity=0.223  Sum_probs=48.6

Q ss_pred             cEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccC
Q 046000          307 KELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQR  385 (470)
Q Consensus       307 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~  385 (470)
                      +.++++++.+. .+|..+.   ..++.|++++|.+.+..+..+..+++|+.|++++|.++.++...+ .+++|++|++++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            45555555554 3443221   224555555555544444444445555555555555554444433 344555555555


Q ss_pred             CcccccCccchhcCCCccEEEcCCccce
Q 046000          386 NDLSGTIPNALFRSSKLMTLDLRDNGFS  413 (470)
Q Consensus       386 ~~l~~~~~~~l~~~~~L~~L~l~~n~l~  413 (470)
                      |.+....+..+..+++|+.|++++|++.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            5554333333444455555555555443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.25  E-value=8.6e-10  Score=102.69  Aligned_cols=303  Identities=11%  Similarity=0.036  Sum_probs=138.7

Q ss_pred             cccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhc
Q 046000          129 TFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQ  208 (470)
Q Consensus       129 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  208 (470)
                      .+....+|+.+.+... ++ .++...|.++.+|+.+.+..+ ++.....++..+ .|+.+.+..+ +. .+....|.. .
T Consensus        41 ~~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~  113 (379)
T 4h09_A           41 WYKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-T  113 (379)
T ss_dssp             TGGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-C
T ss_pred             ccccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceecc-C
Confidence            3444455666666433 33 555556666666666666432 443444455444 4555554332 22 333333432 3


Q ss_pred             cCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCc------------chhhh
Q 046000          209 KLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQ------------IFPKY  276 (470)
Q Consensus       209 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~------------~~~~~  276 (470)
                      +|+.+.+..+-.. .....|... +++.+.+..+ +.......+..+..++...+........            ....+
T Consensus       114 ~L~~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (379)
T 4h09_A          114 DLDDFEFPGATTE-IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESY  190 (379)
T ss_dssp             CCSEEECCTTCCE-ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEEC
T ss_pred             CcccccCCCcccc-ccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccc
Confidence            5666666543211 222334333 3444444332 2334445556666666665554322110            01112


Q ss_pred             cCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCe
Q 046000          277 MNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQ  356 (470)
Q Consensus       277 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~  356 (470)
                      .....+..+.+.... .......+..+..++.+.+..+- .......+.... .++.+.+..+ ++......+..+..|+
T Consensus       191 ~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~~-~~i~~~~f~~~~-~L~~i~lp~~-v~~I~~~aF~~~~~l~  266 (379)
T 4h09_A          191 PAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSGV-TTLGDGAFYGMK-ALDEIAIPKN-VTSIGSFLLQNCTALK  266 (379)
T ss_dssp             CTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTTC-CEECTTTTTTCS-SCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred             cccccccccccccce-eEEeecccccccccceeeeccce-eEEccccccCCc-cceEEEcCCC-ccEeCccccceeehhc
Confidence            223333333332221 11223344455566666654431 101111222222 2555555443 2222334455556666


Q ss_pred             EEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcc
Q 046000          357 LLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNY  435 (470)
Q Consensus       357 ~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  435 (470)
                      .+.+.. .+..++...+ .+++|+++.+.++.+..+...+|.+|.+|+.+.|.++ ++.+-...|.+|++|+++.+..+ 
T Consensus       267 ~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-  343 (379)
T 4h09_A          267 TLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-  343 (379)
T ss_dssp             EEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-
T ss_pred             cccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-
Confidence            666543 2444444444 4566666666655555444555666666666666543 44344445566666666666443 


Q ss_pred             cCcccchhhccCC
Q 046000          436 LEGPISNQFCQLR  448 (470)
Q Consensus       436 i~~~~~~~~~~l~  448 (470)
                      ++.....+|.+++
T Consensus       344 v~~I~~~aF~~c~  356 (379)
T 4h09_A          344 ITLIESGAFEGSS  356 (379)
T ss_dssp             CCEECTTTTTTSS
T ss_pred             cCEEchhHhhCCC
Confidence            4434444555543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.20  E-value=5e-11  Score=109.65  Aligned_cols=102  Identities=23%  Similarity=0.294  Sum_probs=58.9

Q ss_pred             EEEcCCC-cccCCCchhhhccCCCeEEEccC-ccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCC
Q 046000          333 VLLMSKN-FLKGNIPMQLLNHGSLQLLSVSE-NCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRD  409 (470)
Q Consensus       333 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~  409 (470)
                      .++++++ .++ .+|. +..+++|+.|+|++ |.+..++...+ .+++|++|+|++|.+.+..+..|..+++|+.|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            3455555 554 3555 55566666666664 66666555444 556666666666666655555566666666666666


Q ss_pred             ccceeecchhhhcCCCCcEEEccCcccC
Q 046000          410 NGFSGIISDQINESSNLRVLLLRGNYLE  437 (470)
Q Consensus       410 n~l~~~~~~~~~~~~~L~~L~l~~n~i~  437 (470)
                      |++....+..+..++ |+.|+|.+|++.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            666644444444333 666666666655

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.11  E-value=1.2e-10  Score=107.16  Aligned_cols=102  Identities=22%  Similarity=0.210  Sum_probs=55.7

Q ss_pred             EEccCc-cccCccccccccCcccEEEccC-CcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcc
Q 046000          358 LSVSEN-CLSGFMTSSFSLSSLVHLYVQR-NDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNY  435 (470)
Q Consensus       358 L~l~~~-~l~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  435 (470)
                      ++++++ .+..+|. ...+++|++|+|++ |.+....+..|..+++|+.|+|++|++.+..+..|.++++|+.|+|++|+
T Consensus        13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            455555 5555555 33455555555554 55554444555555555555555555555555555555555555555555


Q ss_pred             cCcccchhhccCCCCCeEEccCcccc
Q 046000          436 LEGPISNQFCQLRRLGVMDLSHNRIN  461 (470)
Q Consensus       436 i~~~~~~~~~~l~~L~~l~l~~n~~~  461 (470)
                      ++...+..+..++ |+.|++.+|+++
T Consensus        92 l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           92 LESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             cceeCHHHcccCC-ceEEEeeCCCcc
Confidence            5544444444443 555555555555

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.05  E-value=1.4e-08  Score=94.53  Aligned_cols=169  Identities=11%  Similarity=0.077  Sum_probs=117.1

Q ss_pred             ccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccc
Q 046000          252 FTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYL  331 (470)
Q Consensus       252 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l  331 (470)
                      +..+..+..+.+.... .......+..+.+++.+.+..+ +.......+..+..|+.+.+..+ +. .+....+.....+
T Consensus       190 ~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l  265 (379)
T 4h09_A          190 YPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTAL  265 (379)
T ss_dssp             CCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTC
T ss_pred             ccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehh
Confidence            3344555555544321 2223345566788888888654 33355667888999999999876 33 3333333333338


Q ss_pred             cEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCc
Q 046000          332 EVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDN  410 (470)
Q Consensus       332 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n  410 (470)
                      +.+.+..+ +.......|..|.+|+.+.+.++.++.++...| .+.+|+.+.+..+ ++.+...+|.+|.+|+.+.+.++
T Consensus       266 ~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          266 KTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             CEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             cccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            88888654 333445678899999999999998988888888 7899999999754 65566789999999999999776


Q ss_pred             cceeecchhhhcCCCCc
Q 046000          411 GFSGIISDQINESSNLR  427 (470)
Q Consensus       411 ~l~~~~~~~~~~~~~L~  427 (470)
                       ++.+-...|.++..++
T Consensus       344 -v~~I~~~aF~~c~~~~  359 (379)
T 4h09_A          344 -ITLIESGAFEGSSITK  359 (379)
T ss_dssp             -CCEECTTTTTTSSCCC
T ss_pred             -cCEEchhHhhCCCCCc
Confidence             6656667787775443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.04  E-value=4.1e-10  Score=102.86  Aligned_cols=156  Identities=15%  Similarity=0.164  Sum_probs=94.3

Q ss_pred             hhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhh--ccCCCeEEEccCc--cc------cC
Q 046000          298 DGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLL--NHGSLQLLSVSEN--CL------SG  367 (470)
Q Consensus       298 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~l------~~  367 (470)
                      ..+..+|+|+.|.++++.-. .++. + .. .+|+.|.+..|.+.......+.  .+++|+.|+|+.+  ..      ..
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~-~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~  241 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PR-PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV  241 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTC-BCCS-C-BC-TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred             HHHhcCCCCcEEEEeCCCCc-eecc-c-cC-CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence            33455666777776665211 1222 1 12 2377777776665433333333  5788888887531  11      11


Q ss_pred             ccccc--cccCcccEEEccCCcccccCccchh---cCCCccEEEcCCccceee----cchhhhcCCCCcEEEccCcccCc
Q 046000          368 FMTSS--FSLSSLVHLYVQRNDLSGTIPNALF---RSSKLMTLDLRDNGFSGI----ISDQINESSNLRVLLLRGNYLEG  438 (470)
Q Consensus       368 ~~~~~--~~~~~L~~L~l~~~~l~~~~~~~l~---~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~i~~  438 (470)
                      +....  ..+|+|++|++.+|.+.+.....+.   .+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.+++
T Consensus       242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            11111  1478999999988888754433332   468899999999988753    34445677899999999998886


Q ss_pred             ccchhhcc-CCCCCeEEccCcc
Q 046000          439 PISNQFCQ-LRRLGVMDLSHNR  459 (470)
Q Consensus       439 ~~~~~~~~-l~~L~~l~l~~n~  459 (470)
                      .....+.. +  ...+++++++
T Consensus       322 ~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          322 EMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHHHHc--CCEEEecCCc
Confidence            55555554 3  3467887776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.89  E-value=2.8e-09  Score=97.33  Aligned_cols=139  Identities=13%  Similarity=0.128  Sum_probs=95.3

Q ss_pred             cchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc---ccCcccEEEccC--Cccccc---
Q 046000          320 IPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF---SLSSLVHLYVQR--NDLSGT---  391 (470)
Q Consensus       320 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~---~~~~L~~L~l~~--~~l~~~---  391 (470)
                      +...+...+ .|+.|.+.+|.-. ..+. + ..++|++|++..+.+........   .+|+|++|+|+.  +...+.   
T Consensus       164 L~~ll~~~P-~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~  239 (362)
T 2ra8_A          164 LSPVLDAMP-LLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM  239 (362)
T ss_dssp             CHHHHHTCT-TCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred             HHHHHhcCC-CCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence            334444445 4999999887411 2222 3 37899999999988765443222   589999999863  211111   


Q ss_pred             --Cccch--hcCCCccEEEcCCccceeecchhhh---cCCCCcEEEccCcccCccc----chhhccCCCCCeEEccCccc
Q 046000          392 --IPNAL--FRSSKLMTLDLRDNGFSGIISDQIN---ESSNLRVLLLRGNYLEGPI----SNQFCQLRRLGVMDLSHNRI  460 (470)
Q Consensus       392 --~~~~l--~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~l~l~~n~~  460 (470)
                        +...+  ..+|+|+.|++++|++.+..+..+.   .+++|++|+|+.|.+.+..    +..+..+++|+.|++++|.+
T Consensus       240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence              11122  2579999999999998754333332   5789999999999998743    44456679999999999998


Q ss_pred             cc
Q 046000          461 NG  462 (470)
Q Consensus       461 ~~  462 (470)
                      +.
T Consensus       320 ~d  321 (362)
T 2ra8_A          320 SD  321 (362)
T ss_dssp             CH
T ss_pred             CH
Confidence            74

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.86  E-value=1.2e-09  Score=90.12  Aligned_cols=115  Identities=12%  Similarity=0.116  Sum_probs=73.0

Q ss_pred             hhhhccCCCeEEEccCc-cccCcccccc-----ccCcccEEEccCCcccccC----ccchhcCCCccEEEcCCccceee-
Q 046000          347 MQLLNHGSLQLLSVSEN-CLSGFMTSSF-----SLSSLVHLYVQRNDLSGTI----PNALFRSSKLMTLDLRDNGFSGI-  415 (470)
Q Consensus       347 ~~~~~~~~L~~L~l~~~-~l~~~~~~~~-----~~~~L~~L~l~~~~l~~~~----~~~l~~~~~L~~L~l~~n~l~~~-  415 (470)
                      ..+...+.|++|++++| .+.+......     ..++|++|++++|.+.+..    ...+...++|++|+|++|.+.+. 
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            34455667777777777 6654332222     3567777777777776432    23444557777777777777543 


Q ss_pred             ---cchhhhcCCCCcEEEc--cCcccCcc----cchhhccCCCCCeEEccCcccc
Q 046000          416 ---ISDQINESSNLRVLLL--RGNYLEGP----ISNQFCQLRRLGVMDLSHNRIN  461 (470)
Q Consensus       416 ---~~~~~~~~~~L~~L~l--~~n~i~~~----~~~~~~~l~~L~~l~l~~n~~~  461 (470)
                         +...+...++|++|+|  ++|.|...    +.+.+...++|+.|++++|.+.
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence               3445566677888888  77777653    3445555677888888877764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.75  E-value=4.2e-09  Score=86.82  Aligned_cols=126  Identities=13%  Similarity=0.121  Sum_probs=67.0

Q ss_pred             cccccCCCcCceeeccCC-CCCCccccccccccccccccCCCCchHhhhcCCCCcEEEccCCccccc----cchhhhcCc
Q 046000            5 GAGLHKLKNLEALDLSFN-NINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGS----LPSVIVNLA   79 (470)
Q Consensus         5 ~~~l~~~~~L~~L~ls~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~----~~~~~~~l~   79 (470)
                      ...+...++|++|+|++| .+.+...               ..+..++...++|++|+|++|.+.+.    +.+.+...+
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~---------------~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~   93 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTL---------------KACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN   93 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHH---------------HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHH---------------HHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCC
Confidence            345556666666666666 5542111               01333445556666666666665532    233344455


Q ss_pred             CCcEEeccCccCcCccC---hhhhccccccceecc--cCCCCccccccccCCCCcccccCcccEEEccCcccc
Q 046000           80 SVEYLDLSNSYFEGTFP---ISSLANHSKLKVLRL--SSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLA  147 (470)
Q Consensus        80 ~L~~L~l~~~~~~~~~~---~~~l~~~~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~  147 (470)
                      .|++|++++|.+.+...   ...+...++|++|++  ++|.+....  ...+...+...++|++|++++|.+.
T Consensus        94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g--~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV--EMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH--HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHH--HHHHHHHHHhCCCcCEEeccCCCCC
Confidence            66666666666653211   133445556666666  555443211  1123334555577888888888765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.74  E-value=5e-09  Score=83.83  Aligned_cols=82  Identities=6%  Similarity=-0.046  Sum_probs=38.8

Q ss_pred             cccEEEccCCcccccCccchhcCCCccEEEcCCcc-ceeecchhhhcC----CCCcEEEccCcc-cCcccchhhccCCCC
Q 046000          377 SLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNG-FSGIISDQINES----SNLRVLLLRGNY-LEGPISNQFCQLRRL  450 (470)
Q Consensus       377 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~----~~L~~L~l~~n~-i~~~~~~~~~~l~~L  450 (470)
                      .|++|++++|.+++.....+..+++|+.|+|++|. +++.-...+..+    ++|++|+|++|. |++..-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45555555555544444444455555555555553 333222223321    245555555553 444444444455555


Q ss_pred             CeEEccCc
Q 046000          451 GVMDLSHN  458 (470)
Q Consensus       451 ~~l~l~~n  458 (470)
                      +.|++++|
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            55555555

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.50  E-value=4.7e-08  Score=78.18  Aligned_cols=86  Identities=10%  Similarity=0.183  Sum_probs=62.4

Q ss_pred             CCCeEEEccCccccCcccccc-ccCcccEEEccCCc-ccccCccchhcC----CCccEEEcCCcc-ceeecchhhhcCCC
Q 046000          353 GSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRND-LSGTIPNALFRS----SKLMTLDLRDNG-FSGIISDQINESSN  425 (470)
Q Consensus       353 ~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~-l~~~~~~~l~~~----~~L~~L~l~~n~-l~~~~~~~~~~~~~  425 (470)
                      ..|+.||+++|.+++.+.... .+++|++|+|++|. +++.....+..+    ++|+.|++++|. +++.-...+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            468888888888776655544 68888888888885 666555556553    578888888885 76655556777888


Q ss_pred             CcEEEccCcc-cCc
Q 046000          426 LRVLLLRGNY-LEG  438 (470)
Q Consensus       426 L~~L~l~~n~-i~~  438 (470)
                      |++|++++|+ +++
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            8888888886 553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.48  E-value=3.6e-08  Score=85.23  Aligned_cols=79  Identities=20%  Similarity=0.292  Sum_probs=55.6

Q ss_pred             ccCcccEEEccCCccccc--CccchhcCCCccEEEcCCccceeecchhhhcCC--CCcEEEccCcccCcccc-------h
Q 046000          374 SLSSLVHLYVQRNDLSGT--IPNALFRSSKLMTLDLRDNGFSGIISDQINESS--NLRVLLLRGNYLEGPIS-------N  442 (470)
Q Consensus       374 ~~~~L~~L~l~~~~l~~~--~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~l~~n~i~~~~~-------~  442 (470)
                      .+++|++|+|++|++.+.  ++..+..+++|+.|+|++|++.+.  +.+..+.  +|++|+|++|++.+..|       .
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            467777888887777753  335566778888888888888754  2344444  88888888888875444       3


Q ss_pred             hhccCCCCCeEE
Q 046000          443 QFCQLRRLGVMD  454 (470)
Q Consensus       443 ~~~~l~~L~~l~  454 (470)
                      .+..+|+|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            467788888775

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.46  E-value=6.5e-08  Score=83.62  Aligned_cols=65  Identities=22%  Similarity=0.299  Sum_probs=42.5

Q ss_pred             hcCCCCcEEEccCCcccc--ccchhhhcCcCCcEEeccCccCcCccChhhhccccccceecccCCCCc
Q 046000           52 NNMTRLKVLDTSFNQLSG--SLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNN  117 (470)
Q Consensus        52 ~~~~~L~~L~l~~~~i~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  117 (470)
                      .++++|++|+|++|.+.+  .+++.+..+++|++|+|++|.+.+......+..+ +|++|++++|.+.
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~  233 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC  233 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence            567777777777777765  3345666777777777777777644222233333 7777777777654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.97  E-value=4e-06  Score=68.37  Aligned_cols=109  Identities=10%  Similarity=0.071  Sum_probs=57.9

Q ss_pred             ccCCCeEEEccCc-cccCcccccc-----ccCcccEEEccCCcccccCc----cchhcCCCccEEEcCCccceee----c
Q 046000          351 NHGSLQLLSVSEN-CLSGFMTSSF-----SLSSLVHLYVQRNDLSGTIP----NALFRSSKLMTLDLRDNGFSGI----I  416 (470)
Q Consensus       351 ~~~~L~~L~l~~~-~l~~~~~~~~-----~~~~L~~L~l~~~~l~~~~~----~~l~~~~~L~~L~l~~n~l~~~----~  416 (470)
                      .-+.|+.|+++++ .+.+.+....     ..+.|++|+|++|.+.+...    +++..-++|++|+|++|.|...    +
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            3455666666653 5443322221     34566666666666654322    3333446666666666666432    2


Q ss_pred             chhhhcCCCCcEEEccCc---ccCc----ccchhhccCCCCCeEEccCcc
Q 046000          417 SDQINESSNLRVLLLRGN---YLEG----PISNQFCQLRRLGVMDLSHNR  459 (470)
Q Consensus       417 ~~~~~~~~~L~~L~l~~n---~i~~----~~~~~~~~l~~L~~l~l~~n~  459 (470)
                      .+.+..-+.|++|+|++|   .+..    .+.+.+..-+.|+.|+++.|.
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            233444556777777654   3332    244455555667777666554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.86  E-value=4.5e-06  Score=68.06  Aligned_cols=46  Identities=17%  Similarity=0.318  Sum_probs=26.5

Q ss_pred             chHhhhcCCCCcEEEccCCccccc----cchhhhcCcCCcEEeccCccCc
Q 046000           47 LLDCLNNMTRLKVLDTSFNQLSGS----LPSVIVNLASVEYLDLSNSYFE   92 (470)
Q Consensus        47 ~~~~~~~~~~L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~l~~~~~~   92 (470)
                      +.+++..-+.|+.|+|++|.|.+.    +.+++..-+.|++|+|++|.+.
T Consensus        62 la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           62 LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            344455556666666666666533    2333445566666666666665

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.84  E-value=0.0016  Score=49.45  Aligned_cols=54  Identities=22%  Similarity=0.223  Sum_probs=38.5

Q ss_pred             EEEccCcccc--CccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccc
Q 046000          357 LLSVSENCLS--GFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGF  412 (470)
Q Consensus       357 ~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l  412 (470)
                      .++.+++.++  .+|...  .++|++|+|++|.++.+.+..|..+++|+.|+|++|++
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            6777777776  666543  34677888888887766666677777777777777776

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.83  E-value=0.002  Score=48.86  Aligned_cols=38  Identities=18%  Similarity=0.198  Sum_probs=20.4

Q ss_pred             CCccEEEcCCccceeecchhhhcCCCCcEEEccCcccC
Q 046000          400 SKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLE  437 (470)
Q Consensus       400 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~  437 (470)
                      ++|+.|+|++|+++...++.|..+++|++|+|++|++.
T Consensus        31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            34555555555555444445555555555555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	470
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	9e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.5 bits (166), Expect = 2e-13
 Identities = 43/238 (18%), Positives = 79/238 (33%), Gaps = 7/238 (2%)

Query: 232 KTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNK 291
                L L  N  +      F    +L  L   +N         +  L +L  LYL  N+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 292 FSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNF-LKGNIPMQLL 350
                E        L+EL +  N ++          +  + V L +      G       
Sbjct: 91  LKELPEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 351 NHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDN 410
               L  + +++  ++          SL  L++  N ++     +L   + L  L L  N
Sbjct: 148 GMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 411 GFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCF 468
             S + +  +  + +LR L L  N L           + + V+ L +N I+    + F
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNISAIGSNDF 262

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.7 bits (151), Expect = 2e-11
 Identities = 45/269 (16%), Positives = 88/269 (32%), Gaps = 20/269 (7%)

Query: 55  TRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSR 114
               +LD   N+++        NL ++  L L N+      P  + A   KL+ L LS  
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-GAFAPLVKLERLYLS-- 87

Query: 115 NNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGN 174
            N + +L  +      +L+     +     ++       I+        L       +G 
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE------LGTNPLKSSGI 141

Query: 175 LQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTL 234
                     L ++ ++  N T  +PQ    +   L  + +  N+      +S+  +  L
Sbjct: 142 ENGAFQGMKKLSYIRIADTNIT-TIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 235 TFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSG 294
             L LS N+ S   +        L  L  ++N           +   +  +YL NN  S 
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISA 256

Query: 295 KIED------GLLKSNQLKELDMSNNMLS 317
              +         K      + + +N + 
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.8 bits (146), Expect = 8e-11
 Identities = 52/263 (19%), Positives = 89/263 (33%), Gaps = 13/263 (4%)

Query: 206 ILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSH 265
           +      +D+ NN+          ++K L  L L  N  S      F   V L  L  S 
Sbjct: 29  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 266 NNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIA 325
           N   +        L  L     +  K    + +GL +   + EL  +    SG       
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQ 147

Query: 326 NFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQ 384
                L  + ++   +   IP  L    SL  L +  N ++    +S   L++L  L + 
Sbjct: 148 GMKK-LSYIRIADTNIT-TIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 385 RNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQF 444
            N +S     +L  +  L  L L +N    +     +    ++V+ L  N +    SN F
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD-HKYIQVVYLHNNNISAIGSNDF 262

Query: 445 C------QLRRLGVMDLSHNRIN 461
           C      +      + L  N + 
Sbjct: 263 CPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.9 bits (115), Expect = 6e-07
 Identities = 27/170 (15%), Positives = 53/170 (31%), Gaps = 8/170 (4%)

Query: 303 SNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSE 362
                 LD+ NN ++        N  + L  L++  N +    P        L+ L +S+
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKN-LHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 363 NCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRD--NGFSGIISDQI 420
           N L               L V  N+++    +     ++++ ++L       SGI +   
Sbjct: 89  NQLKELPEKMPKTLQ--ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 421 NESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
                L  + +    +          L  L    L  N+I     +    
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKITKVDAASLKG 193

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.5 bits (114), Expect = 7e-07
 Identities = 46/267 (17%), Positives = 77/267 (28%), Gaps = 25/267 (9%)

Query: 12  KNLEALDLSFNNINGTVESQESF-----ELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQ 66
            +   LDL  N I    +           L L  N I          + +L+ L  S NQ
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 67  LSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENF 126
           L   LP  +        +  +          + L     +++              +   
Sbjct: 91  LK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL-------GTNPLKSSGIE 142

Query: 127 LPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLH 186
              FQ    L Y+ ++  N+    P  +  +   L  L L  N  T          + L 
Sbjct: 143 NGAFQGMKKLSYIRIADTNI-TTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLA 198

Query: 187 HLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSG 246
            L +S N+ +             L  + + NN+     P  + D K +  ++L  NN S 
Sbjct: 199 KLGLSFNSISAV-DNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISA 256

Query: 247 ------ELSTLFTGCVSLWFLDRSHNN 267
                       T   S   +    N 
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSNP 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (162), Expect = 5e-13
 Identities = 49/249 (19%), Positives = 85/249 (34%), Gaps = 6/249 (2%)

Query: 224 LPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLW 283
           +P  I        + L  N  S   +  F  C +L  L    N         +  L  L 
Sbjct: 26  VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 284 FLYLDNNKFSGKIEDGLLKS-NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLK 342
            L L +N     ++        +L  L +        +   +    + L+ L +  N L+
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 343 GNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSK 401
                   + G+L  L +  N +S     +F  L SL  L + +N ++   P+A     +
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 402 LMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRIN 461
           LMTL L  N  S + ++ +     L+ L L  N        +      L     S + + 
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQKFRGSSSEVP 261

Query: 462 GSIPSCFTN 470
            S+P     
Sbjct: 262 CSLPQRLAG 270

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 1e-12
 Identities = 40/260 (15%), Positives = 76/260 (29%), Gaps = 30/260 (11%)

Query: 132 LKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVS 191
           +    + + L  N ++   PA   +    L +L L +N          +    L  LD+S
Sbjct: 30  IPAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 192 SNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTL 251
            N     +       L +L  + +     +   P     +  L +L+L  N         
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 252 FTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGL----------- 300
           F    +L  L    N         +  L  L  L L  N+ +                  
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 301 -------------LKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPM 347
                             L+ L +++N              ++L+    S + +  ++P 
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCSLPQ 266

Query: 348 QLLNHGSLQLLSVSENCLSG 367
           +L       L  ++ N L G
Sbjct: 267 RLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 5e-08
 Identities = 41/272 (15%), Positives = 73/272 (26%), Gaps = 33/272 (12%)

Query: 55  TRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSR 114
              + +    N++S    +      ++                                 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTI------------------------------- 60

Query: 115 NNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGN 174
                 +        F     L+ LDLS N               +L  L L        
Sbjct: 61  LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120

Query: 175 LQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTL 234
                     L +L +  N     LP D    L  L ++ +  NR       +   + +L
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179

Query: 235 TFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSG 294
             L L +N  +      F     L  L    NN           L  L +L L++N +  
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239

Query: 295 KIEDGLLKSNQLKELDMSNNMLSGHIPHWIAN 326
                 L +  L++   S++ +   +P  +A 
Sbjct: 240 DCRARPLWAW-LQKFRGSSSEVPCSLPQRLAG 270

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 5e-06
 Identities = 46/263 (17%), Positives = 80/263 (30%), Gaps = 18/263 (6%)

Query: 35  ELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGT 94
            + L  N I             L +L    N L+    +    LA +E LDLS++    +
Sbjct: 36  RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95

Query: 95  FPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWI 154
              ++     +L  L L       L          F+    L+YL L  N L    P   
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQEL------GPGLFRGLAALQYLYLQDNALQA-LPDDT 148

Query: 155 LQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYID 214
            ++   L  L L  N  +   +        L  L +  N      P      L +L+ + 
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLY 207

Query: 215 MANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLD--RSHNNFHDQI 272
           +  N        ++  ++ L +L L+ N +  +       C +       +       ++
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCD-------CRARPLWAWLQKFRGSSSEV 260

Query: 273 FPKY-MNLTRLWFLYLDNNKFSG 294
                  L       L  N   G
Sbjct: 261 PCSLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 5e-04
 Identities = 31/195 (15%), Positives = 54/195 (27%), Gaps = 17/195 (8%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESFELNLAK-----NNIGGHLLDCLNNMTRLKVLDT 62
            H L  L  L L    +             L       N +     D   ++  L  L  
Sbjct: 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160

Query: 63  SFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLK 122
             N++S         L S++ L L  +      P          + L             
Sbjct: 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP-------HAFRDLGRLMTLYLFANNL 213

Query: 123 TENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKH 182
           +            L+YL L+ N    D  A  L     L+    +++    +L    +  
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW--LQKFRGSSSEVPCSLPQRLAGR 271

Query: 183 DFLHHLDVSSNNFTG 197
           D      +++N+  G
Sbjct: 272 DL---KRLAANDLQG 283

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.4 bits (158), Expect = 3e-12
 Identities = 62/380 (16%), Positives = 119/380 (31%), Gaps = 44/380 (11%)

Query: 11  LKNLEALDLSFNNINGTVESQE---SFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQL 67
           L       L   N+  TV   +      L   +  I    +D +  +  L  ++ S NQL
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQL 78

Query: 68  SGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFL 127
           +   P  + NL  +  + ++N+      P+++L N      L  +   +        N  
Sbjct: 79  TDITP--LKNLTKLVDILMNNNQIADITPLANLTNL-TGLTLFNNQITDIDPLKNLTNLN 135

Query: 128 PTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQL------PHSK 181
                 + +  +       +    ++  Q      +  LT                  +K
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195

Query: 182 HDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSK 241
              L  L  ++N  +   P      L +L    +  N+ +     ++  +  LT L L+ 
Sbjct: 196 LTNLESLIATNNQISDITPLGILTNLDEL---SLNGNQLKD--IGTLASLTNLTDLDLAN 250

Query: 242 NNFSG--------ELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMN----------LTRLW 283
           N  S         +L+ L  G   +  +                N          L  L 
Sbjct: 251 NQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLT 310

Query: 284 FLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKG 343
           +L L  N  S       L    L+ L  +NN +S      +AN ++ +  L    N +  
Sbjct: 311 YLTLYFNNISDISPVSSLTK--LQRLFFANNKVSD--VSSLANLTN-INWLSAGHNQISD 365

Query: 344 NIPMQLLNHGSLQLLSVSEN 363
             P+  L    +  L +++ 
Sbjct: 366 LTPLANLTR--ITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 63.1 bits (152), Expect = 2e-11
 Identities = 74/389 (19%), Positives = 125/389 (32%), Gaps = 40/389 (10%)

Query: 77  NLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDL 136
            LA      L  +    T   + L    ++  L+       +  +    +L       +L
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDL---DQVTTLQAD--RLGIKSIDGVEYLN------NL 68

Query: 137 KYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFT 196
             ++ S+N L    P   L+N TKL  + + NN       L +  +     L  +     
Sbjct: 69  TQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 125

Query: 197 GKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCV 256
             L              ++       N  S I  +  LT L                   
Sbjct: 126 DPLKN----------LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLT 175

Query: 257 SLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNML 316
           +L  LD S N   D        LT L  L   NN+ S     G+L +  L EL ++ N L
Sbjct: 176 TLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQL 231

Query: 317 SGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLS 376
                  +A+ ++ L  L ++ N +    P+  L    L  L +  N +S     +   +
Sbjct: 232 KD--IGTLASLTN-LTDLDLANNQISNLAPLSGLT--KLTELKLGANQISNISPLAGLTA 286

Query: 377 SLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYL 436
                  +      +  + L     L  L L  N  S I    ++  + L+ L    N +
Sbjct: 287 LTNLELNENQLEDISPISNLKN---LTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV 341

Query: 437 EGPISNQFCQLRRLGVMDLSHNRINGSIP 465
               S     L  +  +   HN+I+   P
Sbjct: 342 SDVSS--LANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 17/163 (10%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESFEL-NLAKNNIGGHLLDCLNNMTRLKVLDTSFNQ 66
           L  L NL  LDL+ N I+         +L  L         +  L  +T L  L+ + NQ
Sbjct: 237 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 296

Query: 67  LSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENF 126
                 S I NL ++ YL L  +      P+SSL   +KL+ L  +   NN +       
Sbjct: 297 --LEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQRLFFA---NNKVSD----- 343

Query: 127 LPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNN 169
           + +     ++ +L   HN ++   P   L N T++  L L + 
Sbjct: 344 VSSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQ 383

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.8 bits (156), Expect = 4e-12
 Identities = 50/259 (19%), Positives = 81/259 (31%), Gaps = 3/259 (1%)

Query: 136 LKYLDLSHNNLAGDFP-AWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNN 194
           +  LDLS  NL   +P    L N   L  L +   +       P        H    ++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 195 FTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTG 254
                  D    ++ L+ +D + N   G LP SI  +  L  +    N  SG +   +  
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 255 CVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNN 314
              L+       N      P       L   ++D ++   + +  +L  +      +   
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFA--NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 315 MLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFS 374
             S          S  L  L +  N + G +P  L     L  L+VS N L G +    +
Sbjct: 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289

Query: 375 LSSLVHLYVQRNDLSGTIP 393
           L          N      P
Sbjct: 290 LQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 62.5 bits (150), Expect = 2e-11
 Identities = 58/267 (21%), Positives = 88/267 (32%), Gaps = 11/267 (4%)

Query: 81  VEYLDLSNSYFEGTFPI-SSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYL 139
           V  LDLS       +PI SSLAN   L  L +   NN           P       L YL
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-----LVGPIPPAIAKLTQLHYL 106

Query: 140 DLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKL 199
            ++H N++G  P ++ Q  T + +    N           S  + +       N  +G +
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI-TFDGNRISGAI 165

Query: 200 PQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLW 259
           P   G   +    + ++ NR  G +P +  ++                     +      
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN--T 223

Query: 260 FLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGH 319
                  N       K      L  L L NN+  G +  GL +   L  L++S N L G 
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 320 IPHWIANFSSYLEVLLMSKNFLKGNIP 346
           IP    N     +V   + N      P
Sbjct: 284 IPQG-GNLQR-FDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 62.1 bits (149), Expect = 3e-11
 Identities = 59/257 (22%), Positives = 91/257 (35%), Gaps = 4/257 (1%)

Query: 214 DMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSG--ELSTLFTGCVSLWFLDRSHN-NFHD 270
           D  N  + G L  +      +  L LS  N      + +       L FL      N   
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91

Query: 271 QIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSY 330
            I P    LT+L +LY+ +   SG I D L +   L  LD S N LSG +P  I++  + 
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 331 LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSG 390
           + +     N + G IP    +   L                    +  +       ++  
Sbjct: 152 VGITFDG-NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210

Query: 391 TIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRL 450
              + LF S K                 ++  S NL  L LR N + G +     QL+ L
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

Query: 451 GVMDLSHNRINGSIPSC 467
             +++S N + G IP  
Sbjct: 271 HSLNVSFNNLCGEIPQG 287

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.1 bits (123), Expect = 6e-08
 Identities = 47/268 (17%), Positives = 80/268 (29%), Gaps = 56/268 (20%)

Query: 49  DCLNNMTRLKVLDTSFNQLSG--SLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKL 106
           D      R+  LD S   L     +PS + NL  + +L +            ++A  ++L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 107 KVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCL 166
             L ++  N +                  L  LD S+N L+G  P   + +   L  +  
Sbjct: 104 HYLYITHTNVSG------AIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITF 156

Query: 167 TNNSFTGNLQLPHSKHDFLHHLDVSSNN-------------------------------- 194
             N  +G +   +     L      S N                                
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL 216

Query: 195 --------------FTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLS 240
                          +      K  + + L  +D+ NNR  G LP  +  +K L  L++S
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 241 KNNFSGELSTLFTGCVSLWFLDRSHNNF 268
            NN  GE+               ++N  
Sbjct: 277 FNNLCGEIPQG-GNLQRFDVSAYANNKC 303

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 4e-08
 Identities = 40/207 (19%), Positives = 65/207 (31%), Gaps = 9/207 (4%)

Query: 207 LQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHN 266
           +   L ++         LP  +   K  T LHLS+N               L  L+    
Sbjct: 9   VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 267 NFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIAN 326
                     + +     L  +  +    +      +     +   +      +P     
Sbjct: 66  ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ----TLPALTVLDVSFNRLTSLPLGALR 121

Query: 327 FSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFS-LSSLVHLYVQR 385
               L+ L +  N LK   P  L     L+ LS++ N L+       + L +L  L +Q 
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 386 NDLSGTIPNALFRSSKLMTLDLRDNGF 412
           N L  TIP   F S  L    L  N +
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 6e-07
 Identities = 34/218 (15%), Positives = 65/218 (29%), Gaps = 16/218 (7%)

Query: 52  NNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRL 111
           + +     ++     L+ +LP  +        L LS +     F +++L  +++L  L L
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYT-FSLATLMPYTRLTQLNL 62

Query: 112 SSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSF 171
                              Q+   L  L     +        +L        +   + + 
Sbjct: 63  DRAELTK-----------LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111

Query: 172 TGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDM 231
             +L L   +            N    LP        KL  + +ANN         +  +
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171

Query: 232 KTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFH 269
           + L  L L +N+    +   F G   L F     N + 
Sbjct: 172 ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 35/209 (16%), Positives = 66/209 (31%), Gaps = 8/209 (3%)

Query: 180 SKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHL 239
           SK      ++    N T  LP D   + +    + ++ N       +++     LT L+L
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPD---LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 240 SKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDG 299
            +   +          +         +N    +      L  L  L +  N+ +      
Sbjct: 63  DRAELTKLQVDGTLPVLGTLD---LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 300 LLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLS 359
           L    +L+EL +  N L    P  +       ++  ++ N L       L    +L  L 
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL-SLANNNLTELPAGLLNGLENLDTLL 178

Query: 360 VSENCLSGFMTSSFSLSSLVHLYVQRNDL 388
           + EN L       F    L   ++  N  
Sbjct: 179 LQENSLYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 37/168 (22%), Positives = 57/168 (33%), Gaps = 4/168 (2%)

Query: 303 SNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSE 362
                 L +S N+L       +  ++  L  L + +  L        L    L  L +S 
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTR-LTQLNLDRAELTKLQVDGTLPV--LGTLDLSH 86

Query: 363 NCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINE 422
           N L        +L +L  L V  N L+     AL    +L  L L+ N    +    +  
Sbjct: 87  NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 423 SSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
           +  L  L L  N L    +     L  L  + L  N +  +IP  F  
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG 193

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 6e-07
 Identities = 52/446 (11%), Positives = 107/446 (23%), Gaps = 31/446 (6%)

Query: 35  ELNLAKNNIG-GHLLDCLNNMTRLKVLDTSFNQLSG----SLPSVIVNLASVEYLDLSNS 89
            L++    +      + L  + + +V+      L+      + S +    ++  L+L ++
Sbjct: 6   SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 65

Query: 90  YF--EGTFPISSL--ANHSKLKVLRLSSRNNNMLQLK-------------TENFLPTFQL 132
                G   +         K++ L L +                        +       
Sbjct: 66  ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 125

Query: 133 KHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSS 192
              L+ L     +         L+  +     C    S               + ++ + 
Sbjct: 126 DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 185

Query: 193 NNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLF 252
                +  +D    L+ L                 I   K         +N  G++    
Sbjct: 186 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE 245

Query: 253 TGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMS 312
                L    R    +  +          L  +             G    ++   L   
Sbjct: 246 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE 305

Query: 313 NNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSS 372
             +  G     +   S        S           LL                      
Sbjct: 306 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG 365

Query: 373 FSLSSLVHLYVQRNDLSGT----IPNALFRSSKLMTLDLRDNGFSGIISDQINES----- 423
              S L  L++   D+S +    +   L  +  L  LDL +N        Q+ ES     
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 424 SNLRVLLLRGNYLEGPISNQFCQLRR 449
             L  L+L   Y    + ++   L +
Sbjct: 426 CLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 1e-05
 Identities = 49/454 (10%), Positives = 108/454 (23%), Gaps = 49/454 (10%)

Query: 8   LHKLKNLEALDLSFNNINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQL 67
           L  L+  + + L    +                      +   L     L  L+   N+L
Sbjct: 23  LPLLQQCQVVRLDDCGLT---------------EARCKDISSALRVNPALAELNLRSNEL 67

Query: 68  SGSLPSVI-----VNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRL----------- 111
                  +          ++ L L N    G       +    L  L+            
Sbjct: 68  GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 127

Query: 112 --SSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNN 169
                   +L  +        +             ++    P +     +  ++      
Sbjct: 128 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR 187

Query: 170 SFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIG 229
                L+    + + L        +   +           L  + + +N+      + + 
Sbjct: 188 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELC 247

Query: 230 DMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDN 289
                    L          T          L    +     +    +       L    
Sbjct: 248 PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL 307

Query: 290 NKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQL 349
            +   ++E   +KS        S+         ++           +    ++       
Sbjct: 308 LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR--LEDAGVRELCQGLG 365

Query: 350 LNHGSLQLLSVSENCLSGFMTSSFS-----LSSLVHLYVQRNDLSGTIPNALFRS----- 399
                L++L +++  +S    SS +       SL  L +  N L       L  S     
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 400 SKLMTLDLRDNGFSGIISDQINE----SSNLRVL 429
             L  L L D  +S  + D++        +LRV+
Sbjct: 426 CLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 135 DLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTG----NLQLPHSKHDFLHHLDV 190
           D++ LD+    L+    A +L    + +V+ L +   T     ++      +  L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 191 SSNNFTGKLPQDKGIILQK 209
            SN             LQ 
Sbjct: 63  RSNELGDVGVHCVLQGLQT 81

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.004
 Identities = 49/419 (11%), Positives = 96/419 (22%), Gaps = 30/419 (7%)

Query: 80  SVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYL 139
            ++ LD+             L    + +V+RL   +  + + + ++     ++   L  L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLD--DCGLTEARCKDISSALRVNPALAEL 60

Query: 140 DLSHNNLAGDFPAWILQ----NNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNF 195
           +L  N L       +LQ     + K++ L L N   TG      S            +  
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 196 TGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNF----------- 244
              L      +L + L               S+          + +              
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 245 -------SGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIE 297
                          + C        S     D        +     L       +   +
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240

Query: 298 DGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQL 357
            G+ +         S           I          ++        + +     G    
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300

Query: 358 LSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMT--LDLRDNGFSGI 415
             + E  L                         ++        +L      L D G   +
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360

Query: 416 ISDQINESSNLRVLLLRGNYLEG----PISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
                   S LRVL L    +       ++        L  +DLS+N +  +       
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 46/252 (18%), Positives = 82/252 (32%), Gaps = 18/252 (7%)

Query: 84  LDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSH 143
           LDL+                    V+      + M Q   E+F P       ++++DLS+
Sbjct: 5   LDLTGK----NLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPF-----RVQHMDLSN 55

Query: 144 NNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDK 203
           + +       IL   +KL+ L L     +  +    +K+  L  L++S  +   +     
Sbjct: 56  SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 115

Query: 204 GIILQKLLY-------IDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCV 256
            +     L         D      +  +      +  L      KN    +LSTL   C 
Sbjct: 116 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 175

Query: 257 SLWFLDRSHN-NFHDQIFPKYMNLTRLWFLYLDN-NKFSGKIEDGLLKSNQLKELDMSNN 314
           +L  LD S +    +  F ++  L  L  L L        +    L +   LK L +   
Sbjct: 176 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

Query: 315 MLSGHIPHWIAN 326
           +  G +      
Sbjct: 236 VPDGTLQLLKEA 247

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 38/255 (14%), Positives = 69/255 (27%), Gaps = 16/255 (6%)

Query: 186 HHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFS 245
             LD++  N    +     ++ Q ++      +  +  L       + +  + LS +   
Sbjct: 3   QTLDLTGKNLHPDVTGR--LLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIE 59

Query: 246 GE-LSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSN 304
              L  + + C  L  L        D I       + L  L L                +
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF-SEFALQTLLS 118

Query: 305 QLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQ-------- 356
               LD  N              +       +++  L G       +  S          
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178

Query: 357 --LLSVSENCLSGFMTSSFSLSSLVHLYVQR-NDLSGTIPNALFRSSKLMTLDLRDNGFS 413
              LS S    +      F L+ L HL + R  D+       L     L TL +      
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPD 238

Query: 414 GIISDQINESSNLRV 428
           G +        +L++
Sbjct: 239 GTLQLLKEALPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 3/126 (2%)

Query: 258 LWF-LDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNML 316
           LW  LD +  N H  +  + ++   +       +     +        +++ +D+SN+++
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLSQGVI-AFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVI 58

Query: 317 SGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLS 376
                H I +  S L+ L +    L   I   L  + +L  L++S             LS
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 377 SLVHLY 382
           S   L 
Sbjct: 119 SCSRLD 124

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 40/333 (12%), Positives = 76/333 (22%), Gaps = 14/333 (4%)

Query: 114 RNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWI---LQNNTKLEVLCLTNNS 170
           + + +     ++          +K + LS N +  +   W+   + +   LE+   ++  
Sbjct: 11  KLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF 70

Query: 171 FTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGD 230
                         L    +           D          +    ++        + +
Sbjct: 71  TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHN 130

Query: 231 MKTLTFLHLSKNNFSGELSTLFTGC-VSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDN 289
                           EL+                  N  +    K    T      L  
Sbjct: 131 NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 190

Query: 290 NKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQL 349
            K            + L E       L                 L ++         + L
Sbjct: 191 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 250

Query: 350 LNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRS-----SKLMT 404
            +      LS           S      L  L +Q N++       L          L+ 
Sbjct: 251 NDCL----LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306

Query: 405 LDLRDNGFSGIISDQINESSNLRVLLLRGNYLE 437
           L+L  N FS    D ++E   +     RG   E
Sbjct: 307 LELNGNRFSE-EDDVVDEIREVFSTRGRGELDE 338

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 12/131 (9%)

Query: 58  KVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNN 117
           +VL  +   L+      +  L  V +LDLS++      P  +LA    L+VL+ S     
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP--ALAALRCLEVLQASDNALE 56

Query: 118 MLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQL 177
            +                L+ L L +N L        L +  +L +L L  NS      +
Sbjct: 57  NV--------DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108

Query: 178 PHSKHDFLHHL 188
                + L  +
Sbjct: 109 QERLAEMLPSV 119

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.1 bits (80), Expect = 0.004
 Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 13/131 (9%)

Query: 36  LNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTF 95
           L+LA  ++   +L  L  +  +  LD S N+L    P+    LA++  L++  +      
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA----LAALRCLEVLQASDNALE 56

Query: 96  PISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAG--DFPAW 153
            +  +AN  +L+ L L   NN + Q      L +      L  L+L  N+L         
Sbjct: 57  NVDGVANLPRLQELLLC--NNRLQQSAAIQPLVSCP---RLVLLNLQGNSLCQEEGIQER 111

Query: 154 ILQNNTKLEVL 164
           + +    +  +
Sbjct: 112 LAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.1 bits (80), Expect = 0.004
 Identities = 27/127 (21%), Positives = 41/127 (32%), Gaps = 8/127 (6%)

Query: 212 YIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQ 271
            + +A+          +  +  +T L LS N               L  L  S N   + 
Sbjct: 2   VLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN- 57

Query: 272 IFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKS-NQLKELDMSNNMLSG--HIPHWIANFS 328
                 NL RL  L L NN+         L S  +L  L++  N L     I   +A   
Sbjct: 58  -VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 329 SYLEVLL 335
             +  +L
Sbjct: 117 PSVSSIL 123

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.2 bits (87), Expect = 9e-04
 Identities = 22/182 (12%), Positives = 48/182 (26%), Gaps = 8/182 (4%)

Query: 135 DLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNN 194
           +   +D +   L  + P  I  +      L L +N                        N
Sbjct: 9   EGTTVDCTGRGLK-EIPRDIPLH---TTELLLNDNELGRISSDGLFGRLPHLVKLELKRN 64

Query: 195 FTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTG 254
               +  +       +  + +  N+ +         +  L  L+L  N  S  +   F  
Sbjct: 65  QLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124

Query: 255 CVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNN 314
             SL  L+   +N  +           L    L+           +     ++  D+ ++
Sbjct: 125 LNSLTSLNL-ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHS 180

Query: 315 ML 316
             
Sbjct: 181 EF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 31/177 (17%), Positives = 68/177 (38%), Gaps = 8/177 (4%)

Query: 187 HLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSG 246
            +D +      ++P+D  +   +LL  D  N     +     G +  L  L L +N  +G
Sbjct: 12  TVDCTGRGLK-EIPRDIPLHTTELLLND--NELGRISSDGLFGRLPHLVKLELKRNQLTG 68

Query: 247 ELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQL 306
                F G   +  L    N   +     ++ L +L  L L +N+ S  +       N L
Sbjct: 69  IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128

Query: 307 KELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSEN 363
             L++++N  + +       F+ +L    ++    +   P ++ +   +Q+  +  +
Sbjct: 129 TSLNLASNPFNCNCHLAW--FAEWLRKKSLNGGAARCGAPSKVRD---VQIKDLPHS 180

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 9e-04
 Identities = 30/216 (13%), Positives = 58/216 (26%), Gaps = 20/216 (9%)

Query: 207 LQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHN 266
           L   + I    +        +  D+  +T L       +           +L  L+   N
Sbjct: 18  LANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDN 73

Query: 267 NFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIAN 326
              D    K +       L  +  K    I                 ++        +  
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 327 FSSYLEVLLMSKNFLKGNIPM-------------QLLNHGSLQLLSVSENCLSGFMTSSF 373
               L  +                           L N   L  L   +N +S  ++   
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-ISPLA 192

Query: 374 SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRD 409
           SL +L+ ++++ N +S   P  L  +S L  + L +
Sbjct: 193 SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 28/219 (12%), Positives = 58/219 (26%), Gaps = 15/219 (6%)

Query: 53  NMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLS 112
            +     +    + ++ ++     +L  +  L    +       I  +   + L  L L 
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT---IEGVQYLNNLIGLELK 71

Query: 113 SRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFT 172
                 L         T          ++S            L +    +V  L   S  
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 173 GNLQLPHSKHDFLHHLD------VSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPS 226
             L L  ++   +  L         S              L KL  +   +N+      S
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--IS 189

Query: 227 SIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSH 265
            +  +  L  +HL  N  S           +L+ +  ++
Sbjct: 190 PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 44/328 (13%), Positives = 91/328 (27%), Gaps = 23/328 (7%)

Query: 132 LKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFT------GNLQ---LPHSKH 182
           L      L+L++  L+   P         LE L  + NS T       +L+   + ++  
Sbjct: 36  LDRQAHELELNNLGLS-SLPELP----PHLESLVASCNSLTELPELPQSLKSLLVDNNNL 90

Query: 183 DFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKN 242
             L  L            Q + +   +        +    +L        +L F+    N
Sbjct: 91  KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150

Query: 243 NFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLK 302
                        ++  + D +       +     ++     +  +  +         + 
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210

Query: 303 SNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSE 362
           ++      + +   S    +   N+ + L  L  S  FL  +  +          L    
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 270

Query: 363 NCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINE 422
              +   +      SL  L V  N L   +P       +L  L    N  + +       
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLAEVPE----L 322

Query: 423 SSNLRVLLLRGNYLEGPISNQFCQLRRL 450
             NL+ L +  N L     +    +  L
Sbjct: 323 PQNLKQLHVEYNPLRE-FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 42/297 (14%), Positives = 83/297 (27%), Gaps = 22/297 (7%)

Query: 185 LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNF 244
            H L++++   +  LP+    +   L  +  + N     LP     +K+L   + +    
Sbjct: 40  AHELELNNLGLS-SLPE----LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 93

Query: 245 SGELSTLFTGCVSLWF-----------LDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFS 293
           S     L    VS                +  +  ++ +         L F+   NN+  
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 294 GKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHG 353
              E   L        D ++      +P  + +  +   +L              +    
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 354 SLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFS 413
           +L             +    +  + +    Q         N     S+L       N  S
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273

Query: 414 GIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFTN 470
             I    +   +L  L +  N L   +     +L RL     S N +   +P    N
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERL---IASFNHLA-EVPELPQN 325

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 23/205 (11%), Positives = 52/205 (25%), Gaps = 3/205 (1%)

Query: 132 LKHDLKYLDLSHNNLAGDFPAWI--LQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLD 189
           L  +   L      L            +  K+E+               +        ++
Sbjct: 27  LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 86

Query: 190 VSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELS 249
            ++N         + +   + L I     +   ++       K L  +  + N  + E +
Sbjct: 87  KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 146

Query: 250 TLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKEL 309
           +          L  + N   +     +           DNN       D    ++    L
Sbjct: 147 SFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 206

Query: 310 DMSNNMLSGHIPHWIANFSSYLEVL 334
           D+S   +     + + N    L   
Sbjct: 207 DISRTRIHSLPSYGLENLKK-LRAR 230

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	470
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.84
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.83
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.65
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.61
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.54
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.53
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.52
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.51
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.43
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.32
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.29
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.27
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.48
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.3
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.23
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.03
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.98
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.9

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=2e-26  Score=214.39  Aligned_cols=357  Identities=20%  Similarity=0.201  Sum_probs=186.7

Q ss_pred             cccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccCccCcCccChhhhccccccceecccCCC
Q 046000           36 LNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRN  115 (470)
Q Consensus        36 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  115 (470)
                      ..+....+++.+.  .+.+.+|++|+++++.|++.  +.++.+++|++|++++|++++. +  .+.++++|++|++++|.
T Consensus        27 ~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~--~l~~L~~L~~L~L~~n~   99 (384)
T d2omza2          27 TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T--PLKNLTKLVDILMNNNQ   99 (384)
T ss_dssp             HHTTCSSTTSEEC--HHHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSC
T ss_pred             HHhCCCCCCCccC--HHHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC-c--cccCCcccccccccccc
Confidence            3455555554332  34455666777776666532  3466666777777777666532 2  25566666666666665


Q ss_pred             CccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcc
Q 046000          116 NNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNF  195 (470)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~  195 (470)
                      +...        +.+..+++|+.++++++.+. .++.  ......+.......+.+........................
T Consensus       100 i~~i--------~~l~~l~~L~~L~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  168 (384)
T d2omza2         100 IADI--------TPLANLTNLTGLTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL  168 (384)
T ss_dssp             CCCC--------GGGTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCC
T ss_pred             cccc--------cccccccccccccccccccc-cccc--ccccccccccccccccccccccccccccccccccccccchh
Confidence            4311        12445566777777666665 2332  12334455555555444332222221211111111111111


Q ss_pred             cCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhh
Q 046000          196 TGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPK  275 (470)
Q Consensus       196 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  275 (470)
                      .      ...............+...  ....+..+++++.++++++.+....+  +..+++|+.|++++|.+.+.  ..
T Consensus       169 ~------~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~  236 (384)
T d2omza2         169 K------PLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GT  236 (384)
T ss_dssp             G------GGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GG
T ss_pred             h------hhccccccccccccccccc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--ch
Confidence            1      0111122222222222221  22334455555555555555443322  23344555555555554432  23


Q ss_pred             hcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCC
Q 046000          276 YMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSL  355 (470)
Q Consensus       276 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L  355 (470)
                      +..+++|+.+++++|.+.+..  .+..+++|+.+                         +++++.+.+. + .+..++.+
T Consensus       237 l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L-------------------------~l~~~~l~~~-~-~~~~~~~l  287 (384)
T d2omza2         237 LASLTNLTDLDLANNQISNLA--PLSGLTKLTEL-------------------------KLGANQISNI-S-PLAGLTAL  287 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEE-------------------------ECCSSCCCCC-G-GGTTCTTC
T ss_pred             hhcccccchhccccCccCCCC--cccccccCCEe-------------------------eccCcccCCC-C-cccccccc
Confidence            344444555555544444222  13344444444                         4444444321 1 24456667


Q ss_pred             eEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcc
Q 046000          356 QLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNY  435 (470)
Q Consensus       356 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  435 (470)
                      +.+.+++|.+.++.. ...++++++|++++|++.+..  .+..+++|++|++++|++++ ++ .+.++++|++|++++|+
T Consensus       288 ~~l~~~~n~l~~~~~-~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         288 TNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             SEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSC
T ss_pred             ccccccccccccccc-cchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCc
Confidence            777777777665432 235677788888888777543  36677888888888888774 33 47778888888888888


Q ss_pred             cCcccchhhccCCCCCeEEccCc
Q 046000          436 LEGPISNQFCQLRRLGVMDLSHN  458 (470)
Q Consensus       436 i~~~~~~~~~~l~~L~~l~l~~n  458 (470)
                      +++..|  +.++++|+.|+|++|
T Consensus       363 l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         363 ISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCChh--hccCCCCCEeeCCCC
Confidence            876444  777888888888876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=6e-26  Score=211.11  Aligned_cols=341  Identities=21%  Similarity=0.211  Sum_probs=210.8

Q ss_pred             EccCCccccccchhhhcCcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEE
Q 046000           61 DTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLD  140 (470)
Q Consensus        61 ~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  140 (470)
                      .+..+.+.+...  ...+.+|++|+++++.+.+.   ..+..+++|++|++++|+++..        +.+..+++|++|+
T Consensus        28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~l---~gl~~L~nL~~L~Ls~N~l~~l--------~~l~~L~~L~~L~   94 (384)
T d2omza2          28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDI--------TPLKNLTKLVDIL   94 (384)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECCSSCCCCC---TTGGGCTTCCEEECCSSCCCCC--------GGGTTCTTCCEEE
T ss_pred             HhCCCCCCCccC--HHHhCCCCEEECCCCCCCCc---cccccCCCCCEEeCcCCcCCCC--------ccccCCccccccc
Confidence            455555554333  35678999999999998732   2466778888888887765522        2356667777777


Q ss_pred             ccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCcc
Q 046000          141 LSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRF  220 (470)
Q Consensus       141 l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  220 (470)
                      +++|.+. .+++  +..+++|+.+++.++.+.+...  ......+.......+.+. ......                 
T Consensus        95 L~~n~i~-~i~~--l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~-~~~~~~-----------------  151 (384)
T d2omza2          95 MNNNQIA-DITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISALS-----------------  151 (384)
T ss_dssp             CCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGGGT-----------------
T ss_pred             ccccccc-cccc--cccccccccccccccccccccc--cccccccccccccccccc-cccccc-----------------
Confidence            7777776 4443  4466677777776665553222  122233334443333332 111100                 


Q ss_pred             CCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhh
Q 046000          221 EGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGL  300 (470)
Q Consensus       221 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~  300 (470)
                             ...............     ....+.............+....  ...+..++++..++++++.+.+..+  .
T Consensus       152 -------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~l~l~~n~i~~~~~--~  215 (384)
T d2omza2         152 -------GLTSLQQLSFGNQVT-----DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--L  215 (384)
T ss_dssp             -------TCTTCSEEEEEESCC-----CCGGGTTCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             -------ccccccccccccccc-----hhhhhcccccccccccccccccc--ccccccccccceeeccCCccCCCCc--c
Confidence                   000000000000000     00111122222222233222221  2333455566666666666554332  3


Q ss_pred             cCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccE
Q 046000          301 LKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVH  380 (470)
Q Consensus       301 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~  380 (470)
                      ...++|+++++++|.+. .++ .+..+.. ++.+++.+|.+.+..  .+..+++|+.|+++++.+...++ ...++.++.
T Consensus       216 ~~~~~L~~L~l~~n~l~-~~~-~l~~l~~-L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~l~~  289 (384)
T d2omza2         216 GILTNLDELSLNGNQLK-DIG-TLASLTN-LTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISP-LAGLTALTN  289 (384)
T ss_dssp             GGCTTCCEEECCSSCCC-CCG-GGGGCTT-CSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred             cccCCCCEEECCCCCCC-Ccc-hhhcccc-cchhccccCccCCCC--cccccccCCEeeccCcccCCCCc-ccccccccc
Confidence            44566777777777665 232 3344443 777777777776432  36778999999999999987664 336789999


Q ss_pred             EEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCccc
Q 046000          381 LYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRI  460 (470)
Q Consensus       381 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~  460 (470)
                      +.+.+|.+.+.  ..+..+++++.|++++|++++..  .+..+++|++|++++|++++ ++ .+.++++|+.|++++|++
T Consensus       290 l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l  363 (384)
T d2omza2         290 LELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQI  363 (384)
T ss_dssp             EECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCC
T ss_pred             ccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcC
Confidence            99999999753  45788899999999999998653  38899999999999999985 33 689999999999999999


Q ss_pred             ccccC
Q 046000          461 NGSIP  465 (470)
Q Consensus       461 ~~~~p  465 (470)
                      ++..|
T Consensus       364 ~~l~~  368 (384)
T d2omza2         364 SDLTP  368 (384)
T ss_dssp             CBCGG
T ss_pred             CCChh
Confidence            96654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=1e-27  Score=216.20  Aligned_cols=240  Identities=27%  Similarity=0.385  Sum_probs=163.0

Q ss_pred             chhhcCCCCccEEEccc-cccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCC
Q 046000          225 PSSIGDMKTLTFLHLSK-NNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKS  303 (470)
Q Consensus       225 ~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~  303 (470)
                      |..++.+++|++|++++ |.+.+..|..+..+++|++|++++|++.......+..+.+|+.++++.|.+.+..+..+..+
T Consensus        69 p~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l  148 (313)
T d1ogqa_          69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL  148 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred             ChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccC
Confidence            34444444444444443 33433444444445555555555554444444444555555666666555555555666667


Q ss_pred             CCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEE
Q 046000          304 NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLY  382 (470)
Q Consensus       304 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~  382 (470)
                      +.++.+++++|.+.+.+|..+......++.+.+++|.+++..+..+..+..+ .+++..+......+... .+++++.++
T Consensus       149 ~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~  227 (313)
T d1ogqa_         149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIH  227 (313)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred             cccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccc
Confidence            7777777777777666777666666655677777777776666666655444 57777776654444443 678889999


Q ss_pred             ccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcc-cc
Q 046000          383 VQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNR-IN  461 (470)
Q Consensus       383 l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~-~~  461 (470)
                      +.++.+.+.. ..+..+++|+.|++++|++++.+|+.++.+++|++|+|++|++++.+|. +.++++|+.+++++|+ ++
T Consensus       228 ~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         228 LAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             CCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEE
T ss_pred             cccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCcccc
Confidence            9988887554 4567789999999999999988999999999999999999999888885 5678899999999997 55


Q ss_pred             cc-cCCC
Q 046000          462 GS-IPSC  467 (470)
Q Consensus       462 ~~-~p~~  467 (470)
                      +. +|.|
T Consensus       306 g~plp~c  312 (313)
T d1ogqa_         306 GSPLPAC  312 (313)
T ss_dssp             STTSSCC
T ss_pred             CCCCCCC
Confidence            54 7776

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=4.9e-26  Score=205.04  Aligned_cols=251  Identities=24%  Similarity=0.338  Sum_probs=218.9

Q ss_pred             CcccEEeccCCcccC--CCCcchhhhhccCceeeccC-CccCCCCchhhcCCCCccEEEccccccccccCccccCCCccc
Q 046000          183 DFLHHLDVSSNNFTG--KLPQDKGIILQKLLYIDMAN-NRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLW  259 (470)
Q Consensus       183 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  259 (470)
                      .+++.|+++++.+.+  .+|..++. ++.|++|++++ |.+.+.+|..|+++++|++|++++|.+....+..+..+..|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~-L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhc-Cccccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence            468888888887775  36666654 89999999986 678778899999999999999999999888888888899999


Q ss_pred             EEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCc-cEEECCCCcccCCcchhHHhhhccccEEEcCC
Q 046000          260 FLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQL-KELDMSNNMLSGHIPHWIANFSSYLEVLLMSK  338 (470)
Q Consensus       260 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~  338 (470)
                      +++++.|......+..+..++.++.+++++|.+.+..+..+..+..+ +.+++++|++.+..+..+....  ...+++..
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~--~~~l~l~~  206 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--LAFVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC--CSEEECCS
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc--cccccccc
Confidence            99999998888888889999999999999999988888888777765 8899999999888887776654  45789999


Q ss_pred             CcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecch
Q 046000          339 NFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISD  418 (470)
Q Consensus       339 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~  418 (470)
                      +...+.+|..+..+++++.++++++.+...++....+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|+
T Consensus       207 ~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            99888899999999999999999999987777666789999999999999999999999999999999999999988885


Q ss_pred             hhhcCCCCcEEEccCcccC
Q 046000          419 QINESSNLRVLLLRGNYLE  437 (470)
Q Consensus       419 ~~~~~~~L~~L~l~~n~i~  437 (470)
                       +..+++|+.+++++|+..
T Consensus       287 -~~~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         287 -GGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             -STTGGGSCGGGTCSSSEE
T ss_pred             -cccCCCCCHHHhCCCccc
Confidence             578899999999999854

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=7.9e-24  Score=189.77  Aligned_cols=265  Identities=19%  Similarity=0.197  Sum_probs=131.2

Q ss_pred             CcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEcc
Q 046000          161 LEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLS  240 (470)
Q Consensus       161 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  240 (470)
                      .+.++.++.+++..+ ..+  .+.+++|++++|.+. .++...+..+++|++|++++|.+....+..|..++.|+.|+++
T Consensus        12 ~~~~~C~~~~L~~lP-~~l--~~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLEKVP-KDL--PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCCSCC-CSC--CTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCCccC-CCC--CCCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            444555544444321 122  244566666666555 4444444445556666666655554445555555666666665


Q ss_pred             ccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccc--cccchhhcCCCCccEEECCCCcccC
Q 046000          241 KNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFS--GKIEDGLLKSNQLKELDMSNNMLSG  318 (470)
Q Consensus       241 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~  318 (470)
                      +|.+......   ..+.+..|+..+|.+.......+........+....+...  ......+..+++|+.+++++|.+. 
T Consensus        88 ~n~l~~l~~~---~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-  163 (305)
T d1xkua_          88 KNQLKELPEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-  163 (305)
T ss_dssp             SSCCSBCCSS---CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred             CCccCcCccc---hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-
Confidence            5555433221   1234455555555554444444444444444444443221  122233444445555555554443 


Q ss_pred             CcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchh
Q 046000          319 HIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALF  397 (470)
Q Consensus       319 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~  397 (470)
                      .                         ++..+  +++|+.|++++|.........+ .++.+++|++++|.+.+..+..+.
T Consensus       164 ~-------------------------l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~  216 (305)
T d1xkua_         164 T-------------------------IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA  216 (305)
T ss_dssp             S-------------------------CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred             c-------------------------cCccc--CCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccc
Confidence            2                         22221  3455555555555444443333 455555566665655555555555


Q ss_pred             cCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchh------hccCCCCCeEEccCcccc
Q 046000          398 RSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQ------FCQLRRLGVMDLSHNRIN  461 (470)
Q Consensus       398 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~------~~~l~~L~~l~l~~n~~~  461 (470)
                      ++++|++|++++|+++ .+|+.+..+++|++|++++|+|+......      ...+++|+.|++++|+++
T Consensus       217 ~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         217 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            5566666666666655 33445555666666666666655432222      223455666666666553

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=8.8e-23  Score=182.84  Aligned_cols=266  Identities=20%  Similarity=0.245  Sum_probs=183.3

Q ss_pred             cccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceee
Q 046000          135 DLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYID  214 (470)
Q Consensus       135 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  214 (470)
                      ..+.++.++..++ .+|..+   .++++.|++++|+++......+..+++|++|+++++.+. .++...+..+++|++++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~   85 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLY   85 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEec
Confidence            4788999988888 888754   367999999999999877778999999999999999998 55555566699999999


Q ss_pred             ccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCC--cchhhhcCcccccEEEcccccc
Q 046000          215 MANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHD--QIFPKYMNLTRLWFLYLDNNKF  292 (470)
Q Consensus       215 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~  292 (470)
                      +++|++.. +|..  ..+.++.|.+.++.+.......+.....+..++...+....  .....+..+++|+.++++++.+
T Consensus        86 l~~n~l~~-l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l  162 (305)
T d1xkua_          86 LSKNQLKE-LPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  162 (305)
T ss_dssp             CCSSCCSB-CCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             ccCCccCc-Cccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCc
Confidence            99999884 4433  35688999999999887777777778888888888775433  3344677889999999999987


Q ss_pred             ccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccc
Q 046000          293 SGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSS  372 (470)
Q Consensus       293 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  372 (470)
                      ... +..  .+++++.|++++|...+..+.                         .+..++.++.|++++|.+.+++...
T Consensus       163 ~~l-~~~--~~~~L~~L~l~~n~~~~~~~~-------------------------~~~~~~~l~~L~~s~n~l~~~~~~~  214 (305)
T d1xkua_         163 TTI-PQG--LPPSLTELHLDGNKITKVDAA-------------------------SLKGLNNLAKLGLSFNSISAVDNGS  214 (305)
T ss_dssp             CSC-CSS--CCTTCSEEECTTSCCCEECTG-------------------------GGTTCTTCCEEECCSSCCCEECTTT
T ss_pred             ccc-Ccc--cCCccCEEECCCCcCCCCChh-------------------------Hhhcccccccccccccccccccccc
Confidence            643 222  356777777777766543333                         3444445555555555555444433


Q ss_pred             c-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecch------hhhcCCCCcEEEccCcccC
Q 046000          373 F-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISD------QINESSNLRVLLLRGNYLE  437 (470)
Q Consensus       373 ~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~------~~~~~~~L~~L~l~~n~i~  437 (470)
                      + .+++|++|++++|+++ .+|.++..+++|+.|++++|+++.....      .....++|+.|++++|++.
T Consensus       215 ~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         215 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            3 4555555555555555 3344555555666666666555533222      2234566777777777664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.4e-23  Score=185.90  Aligned_cols=221  Identities=23%  Similarity=0.218  Sum_probs=118.6

Q ss_pred             EeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecC-CC
Q 046000          188 LDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRS-HN  266 (470)
Q Consensus       188 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~-~~  266 (470)
                      +..+++.+. .+|..+.   +.+++|++++|.+....+.+|.+++.|+.|+++++.+.......+..+..+..+... .+
T Consensus        16 v~c~~~~L~-~iP~~ip---~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EECCSSCCS-SCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEcCCCCCC-ccCCCCC---CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            344444444 4444332   345566666666554444455555556666665555555555555555555554433 23


Q ss_pred             cCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCc
Q 046000          267 NFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIP  346 (470)
Q Consensus       267 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~  346 (470)
                      .+.......+.++++|+.++++++.+.......+...++                         ++.+++.+|.+++..+
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~-------------------------L~~l~l~~N~l~~i~~  146 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA-------------------------LQYLYLQDNALQALPD  146 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT-------------------------CCEEECCSSCCCCCCT
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcc-------------------------cchhhhccccccccCh
Confidence            333333334444444444444444444333333334444                         4445555554443334


Q ss_pred             hhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCC
Q 046000          347 MQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSN  425 (470)
Q Consensus       347 ~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  425 (470)
                      ..+..++.|+.|++++|.+..++...+ .+++|+.+++.+|++.+..|..+..+++|+.|++++|++.+..+..++.+++
T Consensus       147 ~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~  226 (284)
T d1ozna_         147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA  226 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred             hHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccc
Confidence            445555666666666666665555554 4566666666666666555666666666666666666666555556666666


Q ss_pred             CcEEEccCcccC
Q 046000          426 LRVLLLRGNYLE  437 (470)
Q Consensus       426 L~~L~l~~n~i~  437 (470)
                      |++|++++|++.
T Consensus       227 L~~L~l~~N~l~  238 (284)
T d1ozna_         227 LQYLRLNDNPWV  238 (284)
T ss_dssp             CCEEECCSSCEE
T ss_pred             cCEEEecCCCCC
Confidence            666666666655

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7e-22  Score=174.78  Aligned_cols=225  Identities=20%  Similarity=0.214  Sum_probs=168.3

Q ss_pred             eeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccc-cc
Q 046000          213 IDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDN-NK  291 (470)
Q Consensus       213 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~-~~  291 (470)
                      +..+++++. .+|..+.  +.++.|++++|.++...+..|.++++|++|+++++.+.......+.....+..+.... +.
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            344555554 4444332  4567777777777666666667777777777777666655555555555555554432 33


Q ss_pred             cccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccc
Q 046000          292 FSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTS  371 (470)
Q Consensus       292 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  371 (470)
                      +....+..+..+++|++|+                         +++|.+....+..+..++.|+.+++++|.++.++..
T Consensus        93 ~~~l~~~~~~~l~~L~~L~-------------------------l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~  147 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLH-------------------------LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD  147 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEE-------------------------CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             cccccchhhcccccCCEEe-------------------------cCCcccccccccccchhcccchhhhccccccccChh
Confidence            3333344444445555554                         444444434455667788999999999999999887


Q ss_pred             cc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCC
Q 046000          372 SF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRL  450 (470)
Q Consensus       372 ~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L  450 (470)
                      .+ .+++|++|++++|++....+.++.++++|+.+++++|++.+..|..|.++++|++|++++|.+.+..+..+..+++|
T Consensus       148 ~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L  227 (284)
T d1ozna_         148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL  227 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred             HhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccccccccc
Confidence            77 68899999999999998888899999999999999999999999999999999999999999999888999999999


Q ss_pred             CeEEccCcccccccC
Q 046000          451 GVMDLSHNRINGSIP  465 (470)
Q Consensus       451 ~~l~l~~n~~~~~~p  465 (470)
                      +.|++++|+++...+
T Consensus       228 ~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         228 QYLRLNDNPWVCDCR  242 (284)
T ss_dssp             CEEECCSSCEECSGG
T ss_pred             CEEEecCCCCCCCcc
Confidence            999999999986654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.6e-20  Score=164.05  Aligned_cols=200  Identities=24%  Similarity=0.164  Sum_probs=140.5

Q ss_pred             CCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEE
Q 046000          230 DMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKEL  309 (470)
Q Consensus       230 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L  309 (470)
                      ....+.+++.+++.++.. |..+.  +++++|++++|.+.......|..+++|++|++++|+++...  .+..+++|++|
T Consensus         8 ~~~~~~~v~C~~~~L~~i-P~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCSSC-CSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCCee-CcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--ccccccccccc
Confidence            445566778877777743 33332  47888888888888777777888888888888888887332  24567888888


Q ss_pred             ECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcc
Q 046000          310 DMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDL  388 (470)
Q Consensus       310 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l  388 (470)
                      ++++|++. ..+..+..+.. ++.++++++.+....+..+..+.+++.|++++|.+..++...+ .+++++.+++++|++
T Consensus        83 ~Ls~N~l~-~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l  160 (266)
T d1p9ag_          83 DLSHNQLQ-SLPLLGQTLPA-LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (266)
T ss_dssp             ECCSSCCS-SCCCCTTTCTT-CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             cccccccc-ccccccccccc-cccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccc
Confidence            88888876 44444554444 7777777777665555666667777777777777777666655 567777777777777


Q ss_pred             cccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccC
Q 046000          389 SGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLE  437 (470)
Q Consensus       389 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~  437 (470)
                      +...+..+..+++|+.|+|++|+++ .+|+.+..+++|+.|+|++|++.
T Consensus       161 ~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            7666666777777777777777777 45666666777777777777765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.2e-22  Score=191.37  Aligned_cols=386  Identities=18%  Similarity=0.089  Sum_probs=193.1

Q ss_pred             CCCcEEEccCCcccccc-chhhhcCcCCcEEeccCccCcCccC---hhhhccccccceecccCCCCccccccccCCCCcc
Q 046000           55 TRLKVLDTSFNQLSGSL-PSVIVNLASVEYLDLSNSYFEGTFP---ISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTF  130 (470)
Q Consensus        55 ~~L~~L~l~~~~i~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  130 (470)
                      ++|++||++++++.+.. .+.+..++++++|+|++|.+++...   ...+..+++|+.|++++|.+......  .+...+
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~--~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH--CVLQGL   79 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH--HHHHTT
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHH--HHHHHH
Confidence            36889999999887532 4456778899999999998763221   23456777788888877765421111  111111


Q ss_pred             c-ccCcccEEEccCccccCccch---HhhhcCCCCcEEEccccccCCccCCCC-----CCCCcccEEeccCCcccCCCCc
Q 046000          131 Q-LKHDLKYLDLSHNNLAGDFPA---WILQNNTKLEVLCLTNNSFTGNLQLPH-----SKHDFLHHLDVSSNNFTGKLPQ  201 (470)
Q Consensus       131 ~-~~~~L~~L~l~~~~i~~~~~~---~~~~~~~~L~~L~l~~~~i~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~  201 (470)
                      . ...+|++|++++|.+++....   ..+..+++|++|++++|.+.......+     ...................   
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~---  156 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA---  156 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG---
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchh---
Confidence            1 224577777777776632211   223345666666666665542111000     0001111122211111100   


Q ss_pred             chhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccC----ccc-cCCCcccEEecCCCcCCCcch---
Q 046000          202 DKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELS----TLF-TGCVSLWFLDRSHNNFHDQIF---  273 (470)
Q Consensus       202 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~-~~l~~L~~L~l~~~~~~~~~~---  273 (470)
                      ...                  .....+...+.++.+.++++.......    ..+ ........+++..+.......   
T Consensus       157 ~~~------------------~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~  218 (460)
T d1z7xw1         157 SCE------------------PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL  218 (460)
T ss_dssp             GHH------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred             hhc------------------ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcc
Confidence            000                  001112233445555555443321110    000 111233445555544433211   


Q ss_pred             -hhhcCcccccEEEccccccccc-----cchhhcCCCCccEEECCCCcccCCcch----hHHhhhccccEEEcCCCcccC
Q 046000          274 -PKYMNLTRLWFLYLDNNKFSGK-----IEDGLLKSNQLKELDMSNNMLSGHIPH----WIANFSSYLEVLLMSKNFLKG  343 (470)
Q Consensus       274 -~~~~~~~~L~~l~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~l~~L~l~~~~~~~  343 (470)
                       ..+...+.++.+.+.++.+...     ..........++.+++++|.+......    .+.... .++.+++++|.+..
T Consensus       219 ~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~-~l~~l~l~~n~i~~  297 (460)
T d1z7xw1         219 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE-SLKELSLAGNELGD  297 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT-TCCEEECTTCCCHH
T ss_pred             cccccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence             2233445566666666554311     122333455667777776665422211    122222 26666666666542


Q ss_pred             CCchhh-----hccCCCeEEEccCccccCcccccc-----ccCcccEEEccCCcccccC----ccchh-cCCCccEEEcC
Q 046000          344 NIPMQL-----LNHGSLQLLSVSENCLSGFMTSSF-----SLSSLVHLYVQRNDLSGTI----PNALF-RSSKLMTLDLR  408 (470)
Q Consensus       344 ~~~~~~-----~~~~~L~~L~l~~~~l~~~~~~~~-----~~~~L~~L~l~~~~l~~~~----~~~l~-~~~~L~~L~l~  408 (470)
                      .....+     .....|+.++++++.+.......+     ..++|++|++++|++.+..    .+.+. ..+.|++|+++
T Consensus       298 ~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls  377 (460)
T d1z7xw1         298 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA  377 (460)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             cccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECC
Confidence            211111     123467777777776655433322     3467777777777775432    22222 34567778888


Q ss_pred             Cccceee----cchhhhcCCCCcEEEccCcccCcccchhh----c-cCCCCCeEEccCccccccc
Q 046000          409 DNGFSGI----ISDQINESSNLRVLLLRGNYLEGPISNQF----C-QLRRLGVMDLSHNRINGSI  464 (470)
Q Consensus       409 ~n~l~~~----~~~~~~~~~~L~~L~l~~n~i~~~~~~~~----~-~l~~L~~l~l~~n~~~~~~  464 (470)
                      +|.+++.    +.+.+..+++|++|++++|+|+..+...+    . +...|+.|++.+|++.+..
T Consensus       378 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~  442 (460)
T d1z7xw1         378 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM  442 (460)
T ss_dssp             TSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             CCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHH
Confidence            7777542    33445667778888888887765333332    2 2235777888777776543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.8e-20  Score=160.38  Aligned_cols=198  Identities=25%  Similarity=0.203  Sum_probs=160.2

Q ss_pred             ccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEc
Q 046000          208 QKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYL  287 (470)
Q Consensus       208 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l  287 (470)
                      ..+..++.+++.+. .+|..+.  ++++.|++++|.+....+..|.++++|++|++++|.++..  +.++.+++|+.|++
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l--~~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE--ECCSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc--cccccccccccccc
Confidence            34556688888877 4565543  5789999999999887778889999999999999988753  34567899999999


Q ss_pred             cccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccC
Q 046000          288 DNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSG  367 (470)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  367 (470)
                      ++|++.. .+..+..+++|+.|+++++.+.+..+..+.... .++.+.+.+|.+....+..+..++.++.+++++|+++.
T Consensus        85 s~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~  162 (266)
T d1p9ag_          85 SHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (266)
T ss_dssp             CSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             ccccccc-cccccccccccccccccccccceeecccccccc-ccccccccccccceeccccccccccchhcccccccccc
Confidence            9998874 455677889999999999988744444444444 48999999999886667777888999999999999998


Q ss_pred             cccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccce
Q 046000          368 FMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFS  413 (470)
Q Consensus       368 ~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~  413 (470)
                      ++...+ .+++|++|++++|+++ .+|+.+..+++|+.|+|++|++.
T Consensus       163 ~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            887776 6899999999999998 67777778899999999999874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.3e-21  Score=186.04  Aligned_cols=123  Identities=21%  Similarity=0.204  Sum_probs=78.7

Q ss_pred             ccEEEcCCCcccCCC----chhhhccCCCeEEEccCccccCcccccc------ccCcccEEEccCCccccc----Cccch
Q 046000          331 LEVLLMSKNFLKGNI----PMQLLNHGSLQLLSVSENCLSGFMTSSF------SLSSLVHLYVQRNDLSGT----IPNAL  396 (470)
Q Consensus       331 l~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~l~~~~~~~~------~~~~L~~L~l~~~~l~~~----~~~~l  396 (470)
                      ++.+.+++|.++...    ...+..+++|++|++++|.+++.+...+      ..+.|++|++++|.+++.    +.+.+
T Consensus       314 L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l  393 (460)
T d1z7xw1         314 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL  393 (460)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred             cccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHH
Confidence            555555555544222    2223456678888888888765332221      356799999999988754    33456


Q ss_pred             hcCCCccEEEcCCccceeecch----hhh-cCCCCcEEEccCcccCcccchh----hccCCCCCeE
Q 046000          397 FRSSKLMTLDLRDNGFSGIISD----QIN-ESSNLRVLLLRGNYLEGPISNQ----FCQLRRLGVM  453 (470)
Q Consensus       397 ~~~~~L~~L~l~~n~l~~~~~~----~~~-~~~~L~~L~l~~n~i~~~~~~~----~~~l~~L~~l  453 (470)
                      ..+++|++|++++|+++.....    .+. ....|+.|++.+|.+.+.....    ..+.|+|+++
T Consensus       394 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         394 LANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             HHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             hcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            6779999999999998653222    222 2347999999999887544433    3445777665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=2.7e-17  Score=150.11  Aligned_cols=313  Identities=24%  Similarity=0.278  Sum_probs=141.1

Q ss_pred             CCcEEEccCCccccccchhhhcCcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCc
Q 046000           56 RLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHD  135 (470)
Q Consensus        56 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  135 (470)
                      ++++|+|+++.++ .+|+.   .++|++|++++|.++ .+|.    ...+|++|++.++.+....    .      ..+.
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~l~~n~l~~l~----~------lp~~   99 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPE----LPQSLKSLLVDNNNLKALS----D------LPPL   99 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSCCC----S------CCTT
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-cccc----chhhhhhhhhhhcccchhh----h------hccc
Confidence            5667777777766 45542   356777777777766 4441    1345555655555443221    0      0134


Q ss_pred             ccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeec
Q 046000          136 LKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDM  215 (470)
Q Consensus       136 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  215 (470)
                      |++|++++|.+. .+|.  +..+++|+.++++++.+.....    ....+..+.+..+...                   
T Consensus       100 L~~L~L~~n~l~-~lp~--~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~-------------------  153 (353)
T d1jl5a_         100 LEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLE-------------------  153 (353)
T ss_dssp             CCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-------------------
T ss_pred             cccccccccccc-cccc--hhhhccceeecccccccccccc----ccccccchhhcccccc-------------------
Confidence            666666666665 4543  2345566666665555442111    1222333333333222                   


Q ss_pred             cCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccc
Q 046000          216 ANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGK  295 (470)
Q Consensus       216 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~  295 (470)
                              ....+..++.++.+.++++.......    .....+.+....+.+..  ...+..++.++.++++++.....
T Consensus       154 --------~~~~l~~l~~l~~L~l~~n~~~~~~~----~~~~~~~l~~~~~~~~~--~~~~~~l~~L~~l~l~~n~~~~~  219 (353)
T d1jl5a_         154 --------ELPELQNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGNNILEE--LPELQNLPFLTTIYADNNLLKTL  219 (353)
T ss_dssp             --------SCCCCTTCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSSC
T ss_pred             --------ccccccccccceeccccccccccccc----ccccccccccccccccc--ccccccccccccccccccccccc
Confidence                    11223344444445544444331111    01112223333322221  12233445555555555443311


Q ss_pred             cchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccccc
Q 046000          296 IEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSL  375 (470)
Q Consensus       296 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~  375 (470)
                       +   ....++..+.+.++.+. ..+..    ...+....+..+.+.+ +..   -.......++..+.+..++.   .+
T Consensus       220 -~---~~~~~l~~~~~~~~~~~-~~~~~----~~~l~~~~~~~~~~~~-l~~---l~~~~~~~~~~~~~~~~~~~---~~  283 (353)
T d1jl5a_         220 -P---DLPPSLEALNVRDNYLT-DLPEL----PQSLTFLDVSENIFSG-LSE---LPPNLYYLNASSNEIRSLCD---LP  283 (353)
T ss_dssp             -C---SCCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSE-ESC---CCTTCCEEECCSSCCSEECC---CC
T ss_pred             -c---ccccccccccccccccc-ccccc----cccccccccccccccc-ccc---ccchhcccccccCccccccc---cC
Confidence             1   12334555555555443 11111    1113333333332221 000   01233344455544443322   24


Q ss_pred             CcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEc
Q 046000          376 SSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDL  455 (470)
Q Consensus       376 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l  455 (470)
                      ++|++|++++|++. .+|.   .+++|+.|++++|+++. +|+   .+++|++|++++|+++ .+|+..   .+|+.|.+
T Consensus       284 ~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~~-l~~---~~~~L~~L~L~~N~L~-~lp~~~---~~L~~L~~  351 (353)
T d1jl5a_         284 PSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLR-EFPDIP---ESVEDLRM  351 (353)
T ss_dssp             TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCCC---TTCCEEEC
T ss_pred             CCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCCc-ccc---ccCCCCEEECcCCcCC-CCCccc---cccCeeEC
Confidence            56677777766666 3332   24566677777776663 333   2456677777777765 344322   24455544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=8.1e-17  Score=146.89  Aligned_cols=304  Identities=23%  Similarity=0.248  Sum_probs=200.0

Q ss_pred             cccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCC
Q 046000          104 SKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHD  183 (470)
Q Consensus       104 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~  183 (470)
                      .++++|++++++++..+       .   ..++|++|++++|+++ .+|+    ...+|+.|++.+++++....    -.+
T Consensus        38 ~~l~~LdLs~~~L~~lp-------~---~~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~l~~n~l~~l~~----lp~   98 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLP-------E---LPPHLESLVASCNSLT-ELPE----LPQSLKSLLVDNNNLKALSD----LPP   98 (353)
T ss_dssp             HTCSEEECTTSCCSCCC-------S---CCTTCSEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSCCCS----CCT
T ss_pred             cCCCEEEeCCCCCCCCC-------C---CCCCCCEEECCCCCCc-cccc----chhhhhhhhhhhcccchhhh----hcc
Confidence            46888999888765322       1   2357899999999888 7775    34678899998888774321    124


Q ss_pred             cccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEec
Q 046000          184 FLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDR  263 (470)
Q Consensus       184 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  263 (470)
                      .|++|++++|.+. .+|..  ..++.|++++++++.+.. .+.   ....+..+.+..+...  ....+..++.++.+.+
T Consensus        99 ~L~~L~L~~n~l~-~lp~~--~~l~~L~~L~l~~~~~~~-~~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l  169 (353)
T d1jl5a_          99 LLEYLGVSNNQLE-KLPEL--QNSSFLKIIDVDNNSLKK-LPD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYA  169 (353)
T ss_dssp             TCCEEECCSSCCS-SCCCC--TTCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEEC
T ss_pred             ccccccccccccc-cccch--hhhccceeeccccccccc-ccc---ccccccchhhcccccc--ccccccccccceeccc
Confidence            5888999888887 66653  237788899888887763 222   2455667776665443  2334566788888888


Q ss_pred             CCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccC
Q 046000          264 SHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKG  343 (470)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~  343 (470)
                      +++.......    .......+...+..+..  ......++.++.+++++|... ..+...    ..+..+.+.++.+..
T Consensus       170 ~~n~~~~~~~----~~~~~~~l~~~~~~~~~--~~~~~~l~~L~~l~l~~n~~~-~~~~~~----~~l~~~~~~~~~~~~  238 (353)
T d1jl5a_         170 DNNSLKKLPD----LPLSLESIVAGNNILEE--LPELQNLPFLTTIYADNNLLK-TLPDLP----PSLEALNVRDNYLTD  238 (353)
T ss_dssp             CSSCCSSCCC----CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCS-SCCSCC----TTCCEEECCSSCCSC
T ss_pred             cccccccccc----ccccccccccccccccc--ccccccccccccccccccccc-cccccc----ccccccccccccccc
Confidence            8876654221    12233445555444431  223456788999999988765 344322    226677777776652


Q ss_pred             CCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcC
Q 046000          344 NIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINES  423 (470)
Q Consensus       344 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~  423 (470)
                       .+.   ....+...++..+.+..+...   .......++..+.+.+.    ...+++|++|++++|++.. +|.   .+
T Consensus       239 -~~~---~~~~l~~~~~~~~~~~~l~~l---~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~~-lp~---~~  303 (353)
T d1jl5a_         239 -LPE---LPQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLIE-LPA---LP  303 (353)
T ss_dssp             -CCC---CCTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCSC-CCC---CC
T ss_pred             -ccc---ccccccccccccccccccccc---cchhcccccccCccccc----cccCCCCCEEECCCCccCc-ccc---cc
Confidence             222   245666777766655443322   23455667777776633    2346899999999999984 554   36


Q ss_pred             CCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccCC
Q 046000          424 SNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPS  466 (470)
Q Consensus       424 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~  466 (470)
                      ++|+.|++++|+|+ .+|..   +++|+.|++++|+++ .+|.
T Consensus       304 ~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         304 PRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             TTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred             CCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCc
Confidence            89999999999998 46643   468999999999988 6664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=9.8e-18  Score=142.47  Aligned_cols=202  Identities=20%  Similarity=0.276  Sum_probs=97.5

Q ss_pred             CceeeccCCCCCCccc---cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccCcc
Q 046000           14 LEALDLSFNNINGTVE---SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSY   90 (470)
Q Consensus        14 L~~L~ls~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~   90 (470)
                      +..++++.+++.+...   +.+|++|++.+|+++..  ..++++++|++|++++|.+.+..+  +..+++|+++++++|.
T Consensus        21 ~~~~~l~~~~~~d~~~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          21 AIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP   96 (227)
T ss_dssp             HHHHHTTCSSTTSEECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred             HHHHHhCCCCcCCcCCHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--cccccccccccccccc
Confidence            3445555555554443   55566666666666532  235666666666666666653322  5566666666666665


Q ss_pred             CcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccc
Q 046000           91 FEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNS  170 (470)
Q Consensus        91 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~  170 (470)
                      +++ .  ..+..+++|+.+.++.+....        ...+...+.++.+.++++.+. ....  +...++++.+++++|.
T Consensus        97 ~~~-i--~~l~~l~~L~~l~l~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~-~~~~--~~~~~~L~~L~l~~n~  162 (227)
T d1h6ua2          97 LKN-V--SAIAGLQSIKTLDLTSTQITD--------VTPLAGLSNLQVLYLDLNQIT-NISP--LAGLTNLQYLSIGNAQ  162 (227)
T ss_dssp             CSC-C--GGGTTCTTCCEEECTTSCCCC--------CGGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSC
T ss_pred             ccc-c--ccccccccccccccccccccc--------cchhccccchhhhhchhhhhc-hhhh--hccccccccccccccc
Confidence            542 1  134455555555555443221        111223344444554444443 1111  2234444444444444


Q ss_pred             cCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCc
Q 046000          171 FTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELST  250 (470)
Q Consensus       171 i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  250 (470)
                      +.+.  .++..                         +++|++|++++|.+.+ ++ .++.+++|+.|++++|+++...  
T Consensus       163 ~~~~--~~l~~-------------------------l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~--  211 (227)
T d1h6ua2         163 VSDL--TPLAN-------------------------LSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVS--  211 (227)
T ss_dssp             CCCC--GGGTT-------------------------CTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCG--
T ss_pred             cccc--hhhcc-------------------------cccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCc--
Confidence            3321  12333                         4555555555555442 21 2455555555555555554332  


Q ss_pred             cccCCCcccEEecC
Q 046000          251 LFTGCVSLWFLDRS  264 (470)
Q Consensus       251 ~~~~l~~L~~L~l~  264 (470)
                      .++.+++|++|+++
T Consensus       212 ~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         212 PLANTSNLFIVTLT  225 (227)
T ss_dssp             GGTTCTTCCEEEEE
T ss_pred             ccccCCCCCEEEee
Confidence            24455555555553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.8e-17  Score=140.88  Aligned_cols=188  Identities=22%  Similarity=0.230  Sum_probs=95.6

Q ss_pred             cCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccE
Q 046000          229 GDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKE  308 (470)
Q Consensus       229 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~  308 (470)
                      ..+.+|+.|++.+|.+...  ..+..+++|++|++++|.+.+..  .+..+++++.++++++.++.  ...+..+++|+.
T Consensus        38 ~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~--i~~l~~l~~L~~  111 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN--VSAIAGLQSIKT  111 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC--CGGGTTCTTCCE
T ss_pred             HHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--cccccccccccccccccccc--cccccccccccc
Confidence            3445555555555555432  23455555555555555554422  24455555556555555442  123445566666


Q ss_pred             EECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcc
Q 046000          309 LDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDL  388 (470)
Q Consensus       309 L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l  388 (470)
                      +.++++...+.                           ..+...+.++.+.++++.+..... ...+++|++|++.+|.+
T Consensus       112 l~l~~~~~~~~---------------------------~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~  163 (227)
T d1h6ua2         112 LDLTSTQITDV---------------------------TPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQV  163 (227)
T ss_dssp             EECTTSCCCCC---------------------------GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred             ccccccccccc---------------------------chhccccchhhhhchhhhhchhhh-hcccccccccccccccc
Confidence            66665544311                           112223344444444444433222 11345555555555555


Q ss_pred             cccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEcc
Q 046000          389 SGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLS  456 (470)
Q Consensus       389 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~  456 (470)
                      .+.  ..+.++++|++|++++|++++. + .+.++++|++|++++|++++..  .+.+++.|+.|+++
T Consensus       164 ~~~--~~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         164 SDL--TPLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             CCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             ccc--hhhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence            422  2245556666666666666542 2 2556666666666666666432  25566666666664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.3e-17  Score=140.92  Aligned_cols=199  Identities=15%  Similarity=0.113  Sum_probs=85.9

Q ss_pred             CccEEEccccccccccCccccCCCcccEEecCCCcCCCc-chhhhcCcccccEEEccc-cccccccchhhcCCCCccEEE
Q 046000          233 TLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQ-IFPKYMNLTRLWFLYLDN-NKFSGKIEDGLLKSNQLKELD  310 (470)
Q Consensus       233 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~L~  310 (470)
                      +++.|++++|.+......+|.++++|++|++++|.+.+. ....|..++.++.+.+.. +.+....+..+..+++|+.++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            344444444444433344444455555555554444332 122344445555554433 334334444455566666666


Q ss_pred             CCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-c-cCcccEEEccCCcc
Q 046000          311 MSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-S-LSSLVHLYVQRNDL  388 (470)
Q Consensus       311 l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~-~~~L~~L~l~~~~l  388 (470)
                      ++++.+....+..                        .+.....+..+...++.+..++...+ . ...++.|++.+|++
T Consensus       110 l~~~~l~~~~~~~------------------------~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l  165 (242)
T d1xwdc1         110 ISNTGIKHLPDVH------------------------KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  165 (242)
T ss_dssp             EESCCCCSCCCCT------------------------TTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cchhhhccccccc------------------------ccccccccccccccccccccccccccccccccceeeecccccc
Confidence            6666554111110                        11112222223333333333332222 1 12444555555555


Q ss_pred             cccCccchhcCCCccEE-EcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEcc
Q 046000          389 SGTIPNALFRSSKLMTL-DLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLS  456 (470)
Q Consensus       389 ~~~~~~~l~~~~~L~~L-~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~  456 (470)
                      .......+ ..++++.+ ++++|+++...++.|.++++|++|++++|+++...+..+.+++.|+++++.
T Consensus       166 ~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         166 QEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             CEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             cccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            43322222 22333332 344445553333445555666666666666554334445555555554443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.2e-17  Score=142.53  Aligned_cols=181  Identities=20%  Similarity=0.186  Sum_probs=86.9

Q ss_pred             CCCCccEEEccccccccc-cCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcccc-ccccccc-hhhcCCCCc
Q 046000          230 DMKTLTFLHLSKNNFSGE-LSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNN-KFSGKIE-DGLLKSNQL  306 (470)
Q Consensus       230 ~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~-~~~~~~~~L  306 (470)
                      ....|++|+++++.+... ....+..+++|++|++++|.+.+.....++.+++|++|+++++ .+++... .....+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            334566666666655432 2334555666666666666665555555556666666666664 3332211 122345666


Q ss_pred             cEEECCCCc-ccCC-cchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCcc--ccCcccccc--ccCcccE
Q 046000          307 KELDMSNNM-LSGH-IPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENC--LSGFMTSSF--SLSSLVH  380 (470)
Q Consensus       307 ~~L~l~~~~-~~~~-~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--l~~~~~~~~--~~~~L~~  380 (470)
                      ++|++++|. +++. +...+...                        ++.|+.|+++++.  +++.....+  .+++|++
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~------------------------~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~  179 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHV------------------------SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH  179 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHS------------------------CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSE
T ss_pred             cccccccccccccccchhhhccc------------------------ccccchhhhcccccccccccccccccccccccc
Confidence            666666553 2211 11122222                        3345555554431  221111111  3455555


Q ss_pred             EEccCCc-ccccCccchhcCCCccEEEcCCc-cceeecchhhhcCCCCcEEEccCc
Q 046000          381 LYVQRND-LSGTIPNALFRSSKLMTLDLRDN-GFSGIISDQINESSNLRVLLLRGN  434 (470)
Q Consensus       381 L~l~~~~-l~~~~~~~l~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~n  434 (470)
                      |++++|. +++.....+..+++|++|++++| .+++.....+..+++|++|++++|
T Consensus       180 L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            5555542 44344444555555555555554 244333344555555555555555

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7e-17  Score=138.80  Aligned_cols=72  Identities=11%  Similarity=0.147  Sum_probs=31.6

Q ss_pred             ceeeccCCCCCCccc--cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccc-cchhhhcCcCCcEEec
Q 046000           15 EALDLSFNNINGTVE--SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGS-LPSVIVNLASVEYLDL   86 (470)
Q Consensus        15 ~~L~ls~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~l~~L~~L~l   86 (470)
                      ++++.++..++..+.  ..++++|++++|.++...+.+|.++++|++|++++|.+... .+.+|..+++++++.+
T Consensus        11 ~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             SEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            455565555543332  22444444444444433333444444444444444444321 1223444444444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.3e-16  Score=132.18  Aligned_cols=178  Identities=21%  Similarity=0.261  Sum_probs=93.4

Q ss_pred             ccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccCccCcCccChhhhccccccceecccCC
Q 046000           35 ELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSR  114 (470)
Q Consensus        35 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  114 (470)
                      +..++.+.+++...  ...++++++|+++++.+...  +.++.+++|++|++++|.+++..   .+.++++|++|+++.|
T Consensus        22 ~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~---~l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          22 KTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT---PLKNLTKLVDILMNNN   94 (199)
T ss_dssp             HHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSS
T ss_pred             HHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc---cccCCccccccccccc
Confidence            34444444443222  23445555555555555422  23555555555555555554321   2455555555555555


Q ss_pred             CCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCc
Q 046000          115 NNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNN  194 (470)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~  194 (470)
                      .+...        +.+..+++|++++++++... .++.  +..+++|+.+++++|.+..  ...+..+++++.|++.+|.
T Consensus        95 ~~~~~--------~~l~~l~~L~~L~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~  161 (199)
T d2omxa2          95 QIADI--------TPLANLTNLTGLTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQ  161 (199)
T ss_dssp             CCCCC--------GGGTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSC
T ss_pred             ccccc--------cccccccccccccccccccc-cccc--cchhhhhHHhhhhhhhhcc--ccccccccccccccccccc
Confidence            43311        12444555666666666554 2222  3356666666666666553  2235566666677776666


Q ss_pred             ccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEE
Q 046000          195 FTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFL  237 (470)
Q Consensus       195 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  237 (470)
                      +. .++.  +..+++|++|++++|++.+ ++ .++.+++|+.|
T Consensus       162 l~-~l~~--l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         162 VT-DLKP--LANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CC-CCGG--GTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             cc-CCcc--ccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            65 3322  2346677777777777663 22 46667776654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=5.5e-16  Score=129.47  Aligned_cols=165  Identities=26%  Similarity=0.370  Sum_probs=108.4

Q ss_pred             cccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEE
Q 046000          279 LTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLL  358 (470)
Q Consensus       279 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L  358 (470)
                      +.+++.++++++.+...  ..+..+++|++|++++|++.+ ++. ++.+.. ++.|++++|.++ .++ .+..+++|+.|
T Consensus        45 L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~-l~~-~~~l~~-L~~L~l~~n~i~-~l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD-IKP-LANLKN-LGWLFLDENKVK-DLS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG-GTTCTT-CCEEECCSSCCC-CGG-GGTTCTTCCEE
T ss_pred             hcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccC-ccc-cccCcc-cccccccccccc-ccc-ccccccccccc
Confidence            34555555555555432  124556666666666666652 222 233333 666666666665 233 36667788888


Q ss_pred             EccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc
Q 046000          359 SVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG  438 (470)
Q Consensus       359 ~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~  438 (470)
                      ++++|.+..++. ...+++++.+++.+|.+.+.  ..+..+++|+.+++++|++.+. + .+.++++|++|++++|++++
T Consensus       118 ~l~~~~~~~~~~-l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         118 SLEHNGISDING-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             ECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB
T ss_pred             cccccccccccc-cccccccccccccccccccc--cccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC
Confidence            888887766543 23677888888888887643  3456778888888888888753 3 37788888888888888874


Q ss_pred             ccchhhccCCCCCeEEccC
Q 046000          439 PISNQFCQLRRLGVMDLSH  457 (470)
Q Consensus       439 ~~~~~~~~l~~L~~l~l~~  457 (470)
                       ++ .+.++++|+.|+|++
T Consensus       193 -l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 -LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -CG-GGTTCTTCSEEEEEE
T ss_pred             -Ch-hhcCCCCCCEEEccC
Confidence             33 578888888888864

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=8.2e-17  Score=132.58  Aligned_cols=171  Identities=20%  Similarity=0.240  Sum_probs=105.2

Q ss_pred             cEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhH-HhhhccccEEEcCCCcccCCCchhhhccCCCeEEEcc
Q 046000          283 WFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWI-ANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVS  361 (470)
Q Consensus       283 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  361 (470)
                      +.++.++++++. .|..+  .+++++|++++|.+++..+... ..+.. ++.|++++|.+....+..+..+++|+.|+++
T Consensus        11 ~~v~Cs~~~L~~-iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~-L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLKE-IPRDI--PLHTTELLLNDNELGRISSDGLFGRLPH-LVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTT-CCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcCc-cCCCC--CCCCCEEEeCCCCCcccccccccCCCce-Eeeeeccccccccccccccccccccceeeec
Confidence            456666666663 33322  3567777777777764443333 33333 7777777777766666666677777777777


Q ss_pred             CccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecc-hhhhcCCCCcEEEccCcccCcc
Q 046000          362 ENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIIS-DQINESSNLRVLLLRGNYLEGP  439 (470)
Q Consensus       362 ~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~i~~~  439 (470)
                      +|++..+++..| .+++|++|+|++|+++...+.+|..+++|++|++++|++..... .++  ...++.+.+..+.+...
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~--~~~l~~~~l~~~~~~c~  164 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF--AEWLRKKSLNGGAARCG  164 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH--HHHHHHHCCSGGGCBBC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHH--hhhhhhhcccCCCeEeC
Confidence            777777766665 56777777777777776666667777777777777777652211 111  12244455556666554


Q ss_pred             cchhhccCCCCCeEEccCccccc
Q 046000          440 ISNQFCQLRRLGVMDLSHNRING  462 (470)
Q Consensus       440 ~~~~~~~l~~L~~l~l~~n~~~~  462 (470)
                      .|..+   ..++.++++.|.++.
T Consensus       165 ~p~~l---~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         165 APSKV---RDVQIKDLPHSEFKC  184 (192)
T ss_dssp             SSTTT---TTSBGGGSCTTTCCC
T ss_pred             CChhh---cCCEeeecCHhhCcC
Confidence            55433   445667777777764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=6.8e-16  Score=128.87  Aligned_cols=165  Identities=23%  Similarity=0.274  Sum_probs=83.4

Q ss_pred             cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccCccCcCccChhhhcccccccee
Q 046000           30 SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVL  109 (470)
Q Consensus        30 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  109 (470)
                      +.++++|++++|.+.+..  .++++++|++|++++|.+++..  .++.+++|++|++++|.+++ ++  .+..+      
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~--~l~~l------  111 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS--SLKDL------  111 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG--GGTTC------
T ss_pred             hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc--ccccc------
Confidence            444555555555554322  2445555555555555554321  23445555555555555442 11  23444      


Q ss_pred             cccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEe
Q 046000          110 RLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLD  189 (470)
Q Consensus       110 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~  189 (470)
                                              ++|+.++++++.+. .++.  +..+++++.++++++.+.+  ......+++|++++
T Consensus       112 ------------------------~~L~~L~l~~~~~~-~~~~--l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~  162 (210)
T d1h6ta2         112 ------------------------KKLKSLSLEHNGIS-DING--LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLS  162 (210)
T ss_dssp             ------------------------TTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEE
T ss_pred             ------------------------cccccccccccccc-cccc--ccccccccccccccccccc--cccccccccccccc
Confidence                                    44555555555443 2322  3345555555555555443  22334455566666


Q ss_pred             ccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccc
Q 046000          190 VSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSK  241 (470)
Q Consensus       190 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  241 (470)
                      +++|.+. .++.  +..+++|+.|++++|.+.+ ++ .+.++++|+.|++++
T Consensus       163 l~~n~l~-~i~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         163 LEDNQIS-DIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCSSCCC-CCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             ccccccc-cccc--ccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            6666655 2322  2335667777777776653 33 467777777777653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=2.4e-16  Score=129.75  Aligned_cols=159  Identities=21%  Similarity=0.176  Sum_probs=124.9

Q ss_pred             ccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCC-CchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEc
Q 046000          306 LKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGN-IPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYV  383 (470)
Q Consensus       306 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l  383 (470)
                      .+.++.+++.++ .+|..+   +..+++|++++|.+++. .+..|..+++|+.|++++|.+..++...+ .+++|++|++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            357888888887 677643   34588999999998753 45667888999999999999888887777 6889999999


Q ss_pred             cCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccc
Q 046000          384 QRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGS  463 (470)
Q Consensus       384 ~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~  463 (470)
                      ++|++....+.+|.++++|++|+|++|+++...++.|..+++|++++|++|++.... ....-..+++...+..+.++..
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~-~~~~~~~~l~~~~l~~~~~~c~  164 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC-HLAWFAEWLRKKSLNGGAARCG  164 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG-GGHHHHHHHHHHCCSGGGCBBC
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc-chHHHhhhhhhhcccCCCeEeC
Confidence            999998777888889999999999999998888888889999999999999887422 2211123466677788888877


Q ss_pred             cCCCcc
Q 046000          464 IPSCFT  469 (470)
Q Consensus       464 ~p~~~~  469 (470)
                      .|..++
T Consensus       165 ~p~~l~  170 (192)
T d1w8aa_         165 APSKVR  170 (192)
T ss_dssp             SSTTTT
T ss_pred             CChhhc
Confidence            787665

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=7.1e-16  Score=127.64  Aligned_cols=179  Identities=25%  Similarity=0.280  Sum_probs=139.5

Q ss_pred             CcCceeeccCCCCCCccc---cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccC
Q 046000           12 KNLEALDLSFNNINGTVE---SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSN   88 (470)
Q Consensus        12 ~~L~~L~ls~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~   88 (470)
                      ++...++++.+.+.+...   +.++++|+++++.+...  ..++.+++|++|++++|.+++..+  ++++++|++|++++
T Consensus        18 ~~~i~~~l~~~~~~~~~~~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~   93 (199)
T d2omxa2          18 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNN   93 (199)
T ss_dssp             HHHHHHHTTCSSTTSEECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             HHHHHHHhCCCCCCCccCHHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCcccccccccc
Confidence            344556777777776654   77889999999998853  358899999999999999985543  88999999999999


Q ss_pred             ccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccc
Q 046000           89 SYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTN  168 (470)
Q Consensus        89 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~  168 (470)
                      |.+.. .+  .+.++++|+.|+++++.....        ..+..+++|+.+++++|.+. .++.  +..+++++.|++.+
T Consensus        94 n~~~~-~~--~l~~l~~L~~L~l~~~~~~~~--------~~~~~l~~L~~L~l~~n~l~-~~~~--l~~~~~L~~L~l~~  159 (199)
T d2omxa2          94 NQIAD-IT--PLANLTNLTGLTLFNNQITDI--------DPLKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLNFSS  159 (199)
T ss_dssp             SCCCC-CG--GGTTCTTCSEEECCSSCCCCC--------GGGTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCS
T ss_pred             ccccc-cc--ccccccccccccccccccccc--------cccchhhhhHHhhhhhhhhc-cccc--cccccccccccccc
Confidence            98763 33  478899999999988765522        23566788999999999987 5553  56889999999999


Q ss_pred             cccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCcee
Q 046000          169 NSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYI  213 (470)
Q Consensus       169 ~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  213 (470)
                      |.+++.  .++..+++|++|++++|.+. .++.  +..+++|+.|
T Consensus       160 n~l~~l--~~l~~l~~L~~L~ls~N~i~-~i~~--l~~L~~L~~L  199 (199)
T d2omxa2         160 NQVTDL--KPLANLTTLERLDISSNKVS-DISV--LAKLTNLESL  199 (199)
T ss_dssp             SCCCCC--GGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEE
T ss_pred             ccccCC--ccccCCCCCCEEECCCCCCC-CCcc--ccCCCCCCcC
Confidence            988864  35788999999999999887 4442  3347777764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.4e-16  Score=137.26  Aligned_cols=256  Identities=16%  Similarity=0.104  Sum_probs=157.0

Q ss_pred             cEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCC-CchhhcCCCCccEEEcc
Q 046000          162 EVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGN-LPSSIGDMKTLTFLHLS  240 (470)
Q Consensus       162 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~  240 (470)
                      +.+|+++..+.......+.. .....+.+........... .+ ...+|++|++++|.+... ....+..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~-~~-~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAE-HF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCS-CC-CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchhh-hc-cCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            46777776553111111110 1244566665554422222 22 256899999999987633 34457889999999999


Q ss_pred             ccccccccCccccCCCcccEEecCCC-cCCCcchhh-hcCcccccEEEccccc-ccccc-chhh-cCCCCccEEECCCCc
Q 046000          241 KNNFSGELSTLFTGCVSLWFLDRSHN-NFHDQIFPK-YMNLTRLWFLYLDNNK-FSGKI-EDGL-LKSNQLKELDMSNNM  315 (470)
Q Consensus       241 ~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~-~~~~~~L~~l~l~~~~-~~~~~-~~~~-~~~~~L~~L~l~~~~  315 (470)
                      ++.+.+.....+..+++|++|++++| .+++..... ...+++|++|++++|. +++.. ...+ ...+.|+.|+++++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            99988777777888999999999996 555543333 3568999999999874 43222 1222 345789999998763


Q ss_pred             ccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCcc-ccCcccccc-ccCcccEEEccCC-cccccC
Q 046000          316 LSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENC-LSGFMTSSF-SLSSLVHLYVQRN-DLSGTI  392 (470)
Q Consensus       316 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~-~~~~L~~L~l~~~-~l~~~~  392 (470)
                      .. .....                     +......+++|++|++++|. +++...... .+++|++|++++| .+++..
T Consensus       160 ~~-i~~~~---------------------l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~  217 (284)
T d2astb2         160 KN-LQKSD---------------------LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET  217 (284)
T ss_dssp             GG-SCHHH---------------------HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred             cc-ccccc---------------------ccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHH
Confidence            21 00011                     11223346677777777653 443332222 5778888888875 466555


Q ss_pred             ccchhcCCCccEEEcCCcccee-ecchhhhcCCCCcEEEccCcccCcccchhhcc
Q 046000          393 PNALFRSSKLMTLDLRDNGFSG-IISDQINESSNLRVLLLRGNYLEGPISNQFCQ  446 (470)
Q Consensus       393 ~~~l~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  446 (470)
                      ...+..+++|+.|++++| +.+ ........+|+|+   +..++++...+..+..
T Consensus       218 l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         218 LLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGN  268 (284)
T ss_dssp             GGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSS
T ss_pred             HHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCCCCCCccCc
Confidence            566777888888888887 332 2222334566665   4666676555544443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.61  E-value=5.1e-16  Score=140.71  Aligned_cols=186  Identities=22%  Similarity=0.199  Sum_probs=109.2

Q ss_pred             cCcccccEEEcccccccccc----chhhcCCCCccEEECCCCcccCCcchhHH------------hhhccccEEEcCCCc
Q 046000          277 MNLTRLWFLYLDNNKFSGKI----EDGLLKSNQLKELDMSNNMLSGHIPHWIA------------NFSSYLEVLLMSKNF  340 (470)
Q Consensus       277 ~~~~~L~~l~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------~~~~~l~~L~l~~~~  340 (470)
                      ..+++|+.+++++|.+....    ...+...++|++|++++|.+.......++            .....++.+.++++.
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  169 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence            34555666666655554321    22333456666666666655321111111            112235666666666


Q ss_pred             ccCC----CchhhhccCCCeEEEccCccccCcccc------ccccCcccEEEccCCccccc----CccchhcCCCccEEE
Q 046000          341 LKGN----IPMQLLNHGSLQLLSVSENCLSGFMTS------SFSLSSLVHLYVQRNDLSGT----IPNALFRSSKLMTLD  406 (470)
Q Consensus       341 ~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~------~~~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~L~  406 (470)
                      +...    +...+..++.++.|++++|.+.+.+..      ...+++|++|++++|.+++.    +...+..+++|+.|+
T Consensus       170 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~  249 (344)
T d2ca6a1         170 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  249 (344)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             ccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhh
Confidence            5422    223345677788888888877643211      11567888888888887543    234566778888888


Q ss_pred             cCCccceeecc----hhhhc--CCCCcEEEccCcccCcc----cchhhc-cCCCCCeEEccCccccc
Q 046000          407 LRDNGFSGIIS----DQINE--SSNLRVLLLRGNYLEGP----ISNQFC-QLRRLGVMDLSHNRING  462 (470)
Q Consensus       407 l~~n~l~~~~~----~~~~~--~~~L~~L~l~~n~i~~~----~~~~~~-~l~~L~~l~l~~n~~~~  462 (470)
                      +++|.+.+...    ..+..  .+.|++|++++|+|...    +...+. +++.|+.|++++|++.+
T Consensus       250 Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            88888765422    23332  35688888888888652    333443 46788888888888764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1e-14  Score=115.51  Aligned_cols=122  Identities=16%  Similarity=0.064  Sum_probs=85.5

Q ss_pred             ccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCc
Q 046000          331 LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDN  410 (470)
Q Consensus       331 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n  410 (470)
                      +++|++++|+++ .++..+..++.|+.|++++|.+.+++. ...+++|++|++++|++....+..+..+++|+.|++++|
T Consensus        20 lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l~~-~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N   97 (162)
T d1a9na_          20 DRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN   97 (162)
T ss_dssp             CEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEECC-CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC
T ss_pred             CcEEECCCCCCC-ccCccccccccCCEEECCCCCCCccCC-cccCcchhhhhcccccccCCCccccccccccccceeccc
Confidence            455555555554 334444567778888888888776642 336788888888888887665556667888888888888


Q ss_pred             cceeec-chhhhcCCCCcEEEccCcccCccc---chhhccCCCCCeEE
Q 046000          411 GFSGII-SDQINESSNLRVLLLRGNYLEGPI---SNQFCQLRRLGVMD  454 (470)
Q Consensus       411 ~l~~~~-~~~~~~~~~L~~L~l~~n~i~~~~---~~~~~~l~~L~~l~  454 (470)
                      ++.... ...+..+++|++|++++|+++...   +..+..+|+|+.||
T Consensus        98 ~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          98 SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            887432 245777888888888888886422   23577788888876

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.6e-14  Score=114.45  Aligned_cols=114  Identities=15%  Similarity=0.100  Sum_probs=97.8

Q ss_pred             hhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcE
Q 046000          349 LLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRV  428 (470)
Q Consensus       349 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  428 (470)
                      +..+..+++|++++|+++.++.....+++|+.|++++|++...  +.+..+++|++|++++|+++...+..+..+++|++
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccccc
Confidence            4567789999999999999875545789999999999999854  45788999999999999999776777788999999


Q ss_pred             EEccCcccCccc-chhhccCCCCCeEEccCcccccccC
Q 046000          429 LLLRGNYLEGPI-SNQFCQLRRLGVMDLSHNRINGSIP  465 (470)
Q Consensus       429 L~l~~n~i~~~~-~~~~~~l~~L~~l~l~~n~~~~~~p  465 (470)
                      |++++|++.... ...+..+++|+.+++++|+++ ..|
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~  128 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKK  128 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GST
T ss_pred             ceeccccccccccccccccccccchhhcCCCccc-ccc
Confidence            999999998532 257889999999999999998 444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=4e-14  Score=106.44  Aligned_cols=118  Identities=20%  Similarity=0.158  Sum_probs=68.6

Q ss_pred             cEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCcc
Q 046000          332 EVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNG  411 (470)
Q Consensus       332 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~  411 (470)
                      +.|++++|.++ .++ .+..++.|++|++++|++++++.....+++|++|++++|.+++.  +.+..+++|+.|++++|+
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccCcchhhhhhhhccccccccccccccc--CccccccccCeEECCCCc
Confidence            35666666665 333 35666666667776666666655444566666666666666633  235666666666666666


Q ss_pred             ceeec-chhhhcCCCCcEEEccCcccCc---ccchhhccCCCCCeE
Q 046000          412 FSGII-SDQINESSNLRVLLLRGNYLEG---PISNQFCQLRRLGVM  453 (470)
Q Consensus       412 l~~~~-~~~~~~~~~L~~L~l~~n~i~~---~~~~~~~~l~~L~~l  453 (470)
                      +.... ...+..+++|++|++++|++++   ........+|+|+.+
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            65432 2345666666666666666643   122233445555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=5.4e-14  Score=105.71  Aligned_cols=103  Identities=23%  Similarity=0.298  Sum_probs=75.2

Q ss_pred             eEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcc
Q 046000          356 QLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNY  435 (470)
Q Consensus       356 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  435 (470)
                      +.|++++|.+++++. ...+++|++|++++|+++ .+|..+..+++|++|++++|+++.. + .+..+++|++|++++|+
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCc
Confidence            467888888876653 336778888888888887 4456677788888888888887743 3 47778888888888888


Q ss_pred             cCccc-chhhccCCCCCeEEccCccccc
Q 046000          436 LEGPI-SNQFCQLRRLGVMDLSHNRING  462 (470)
Q Consensus       436 i~~~~-~~~~~~l~~L~~l~l~~n~~~~  462 (470)
                      |++.. ...+..+++|+.+++++|++++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            87532 2567777888888888888773

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.51  E-value=1.5e-14  Score=130.83  Aligned_cols=187  Identities=22%  Similarity=0.192  Sum_probs=121.5

Q ss_pred             ccCCCcccEEecCCCcCCCcchh----hhcCcccccEEEccccccccccc-------------hhhcCCCCccEEECCCC
Q 046000          252 FTGCVSLWFLDRSHNNFHDQIFP----KYMNLTRLWFLYLDNNKFSGKIE-------------DGLLKSNQLKELDMSNN  314 (470)
Q Consensus       252 ~~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~~~-------------~~~~~~~~L~~L~l~~~  314 (470)
                      +..+++|+.|++++|.+......    .+...++|+.+++++|.+.....             ......+.++.+.++++
T Consensus        89 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n  168 (344)
T d2ca6a1          89 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  168 (344)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             HhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccc
Confidence            34456666777776666554322    23345667777777665532111             11234677888888888


Q ss_pred             cccCCcchhHHhh---hccccEEEcCCCcccCC-----CchhhhccCCCeEEEccCccccCccccc-----cccCcccEE
Q 046000          315 MLSGHIPHWIANF---SSYLEVLLMSKNFLKGN-----IPMQLLNHGSLQLLSVSENCLSGFMTSS-----FSLSSLVHL  381 (470)
Q Consensus       315 ~~~~~~~~~~~~~---~~~l~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~~~-----~~~~~L~~L  381 (470)
                      .+.......+...   ...++.+++.+|.+...     +...+..+++|+.|++++|.+++.....     ..+++|++|
T Consensus       169 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L  248 (344)
T d2ca6a1         169 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL  248 (344)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             cccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhh
Confidence            7764333333221   22488888888877532     2334667889999999999876543221     267899999


Q ss_pred             EccCCcccccCcc----chhc--CCCccEEEcCCccceee----cchhhh-cCCCCcEEEccCcccCc
Q 046000          382 YVQRNDLSGTIPN----ALFR--SSKLMTLDLRDNGFSGI----ISDQIN-ESSNLRVLLLRGNYLEG  438 (470)
Q Consensus       382 ~l~~~~l~~~~~~----~l~~--~~~L~~L~l~~n~l~~~----~~~~~~-~~~~L~~L~l~~n~i~~  438 (470)
                      ++++|.+++....    ++..  .++|++|++++|++...    +...+. ++++|+.|++++|++..
T Consensus       249 ~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            9999998755332    3333  36799999999998643    233343 67899999999999974

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.43  E-value=1.7e-14  Score=118.50  Aligned_cols=136  Identities=19%  Similarity=0.264  Sum_probs=98.0

Q ss_pred             CcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhc
Q 046000          319 HIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFR  398 (470)
Q Consensus       319 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~  398 (470)
                      .++..+..+.. ++.|++++|.++ .++ .+..+++|+.|++++|.+++++.....+++|++|++++|.++..  ..+..
T Consensus        39 ~l~~sl~~L~~-L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~  113 (198)
T d1m9la_          39 KMDATLSTLKA-CKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL--SGIEK  113 (198)
T ss_dssp             CCHHHHHHTTT-CCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCH--HHHHH
T ss_pred             hhhhHHhcccc-cceeECcccCCC-Ccc-cccCCccccChhhccccccccccccccccccccccccccccccc--ccccc
Confidence            44455555555 777777777776 333 47778888899998888887765444567889999998888743  34677


Q ss_pred             CCCccEEEcCCccceeecc-hhhhcCCCCcEEEccCcccCcccch----------hhccCCCCCeEEccCcccc
Q 046000          399 SSKLMTLDLRDNGFSGIIS-DQINESSNLRVLLLRGNYLEGPISN----------QFCQLRRLGVMDLSHNRIN  461 (470)
Q Consensus       399 ~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~----------~~~~l~~L~~l~l~~n~~~  461 (470)
                      +++|+.|++++|++..... ..+..+++|++|++++|++....+.          .+..+|+|+.||  +.+++
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            8889999999998875322 4578889999999999987643222          266788898876  55555

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4.8e-12  Score=99.14  Aligned_cols=137  Identities=16%  Similarity=0.170  Sum_probs=88.7

Q ss_pred             ccEEEcCCCcccCCCchhhhccCCCeEEEccCc-cccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcC
Q 046000          331 LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSEN-CLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLR  408 (470)
Q Consensus       331 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~  408 (470)
                      .+.+++.++.+. ..|..+..+++|+.|+++++ .++.++...+ .+++|+.|++++|+++.+.+.+|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            345666666665 45666777778888888665 4777776666 67888888888888887777778888888888888


Q ss_pred             CccceeecchhhhcCCCCcEEEccCcccCc-ccchhhccCCCCCeEEccCcccccccCCCcc
Q 046000          409 DNGFSGIISDQINESSNLRVLLLRGNYLEG-PISNQFCQLRRLGVMDLSHNRINGSIPSCFT  469 (470)
Q Consensus       409 ~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~  469 (470)
                      +|+++...++.+. ..+|+.|+|++|++.. ....++...-......+..++++..-|+.++
T Consensus        89 ~N~l~~l~~~~~~-~~~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~~~~~~~~~C~~p~~l~  149 (156)
T d2ifga3          89 FNALESLSWKTVQ-GLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLA  149 (156)
T ss_dssp             SSCCSCCCSTTTC-SCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSS
T ss_pred             CCCCcccChhhhc-cccccccccCCCcccCCchHHHHHHHHHhccCccCcCCcEECcChHHC
Confidence            8888754444444 3468888888888752 1111222211122333445666666665554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.29  E-value=1.7e-13  Score=112.40  Aligned_cols=119  Identities=20%  Similarity=0.201  Sum_probs=99.0

Q ss_pred             CCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcC
Q 046000          344 NIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINES  423 (470)
Q Consensus       344 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~  423 (470)
                      .++..+..+++|++|++++|.+++++. ...+++|++|++++|.++. ++.....+++|+.|++++|+++..  +.+..+
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~i~~-l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l  114 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEKISS-LSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIEKL  114 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESCCCC-HHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--HHHHHH
T ss_pred             hhhhHHhcccccceeECcccCCCCccc-ccCCccccChhhccccccc-cccccccccccccccccccccccc--cccccc
Confidence            456778899999999999999998753 3378999999999999984 455555668899999999999853  458889


Q ss_pred             CCCcEEEccCcccCcccc-hhhccCCCCCeEEccCcccccccCC
Q 046000          424 SNLRVLLLRGNYLEGPIS-NQFCQLRRLGVMDLSHNRINGSIPS  466 (470)
Q Consensus       424 ~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~l~l~~n~~~~~~p~  466 (470)
                      ++|++|++++|+|+.... ..+..+++|+.|++++|+++...|.
T Consensus       115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  158 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCT
T ss_pred             ccccccccccchhccccccccccCCCccceeecCCCccccCccc
Confidence            999999999999985322 5789999999999999999865554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=5e-12  Score=99.02  Aligned_cols=109  Identities=18%  Similarity=0.107  Sum_probs=78.1

Q ss_pred             cCCCeEEEccCccccCccccccccCcccEEEccCC-cccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEE
Q 046000          352 HGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRN-DLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLL  430 (470)
Q Consensus       352 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  430 (470)
                      +...+.++.+++.+.+.+.....+++|++|++.++ .++.+.+.+|.++++|+.|++++|++..+.++.|..+++|++|+
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             cCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            44456677777777776666556778888888655 46656666777788888888888888777677778888888888


Q ss_pred             ccCcccCcccchhhccCCCCCeEEccCcccc
Q 046000          431 LRGNYLEGPISNQFCQLRRLGVMDLSHNRIN  461 (470)
Q Consensus       431 l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~  461 (470)
                      |++|+++...+..+. ...|+.|+|++|++.
T Consensus        87 Ls~N~l~~l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALESLSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSCCCSTTTC-SCCCCEEECCSSCCC
T ss_pred             ccCCCCcccChhhhc-cccccccccCCCccc
Confidence            888888754444454 346788888888774

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=4.1e-09  Score=82.76  Aligned_cols=86  Identities=19%  Similarity=0.201  Sum_probs=57.0

Q ss_pred             ccCcccEEEccCCcccccC--ccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccc-------hhh
Q 046000          374 SLSSLVHLYVQRNDLSGTI--PNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPIS-------NQF  444 (470)
Q Consensus       374 ~~~~L~~L~l~~~~l~~~~--~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-------~~~  444 (470)
                      .+++|++|++++|++++..  +..+..+++|+.|++++|.+.....-......+|+++++++|++.....       ..+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            4677777777777776542  3445677888888888888875433233445578888888888875333       235


Q ss_pred             ccCCCCCeEEccCcccc
Q 046000          445 CQLRRLGVMDLSHNRIN  461 (470)
Q Consensus       445 ~~l~~L~~l~l~~n~~~  461 (470)
                      ..+|+|++||  |.+++
T Consensus       143 ~~~P~L~~LD--g~~v~  157 (162)
T d1koha1         143 ERFPKLLRLD--GHELP  157 (162)
T ss_dssp             TTSTTCCEET--TEECC
T ss_pred             HHCCCCCEEC--cCCCc
Confidence            6678888775  55543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.4e-07  Score=73.76  Aligned_cols=81  Identities=23%  Similarity=0.193  Sum_probs=63.5

Q ss_pred             cccccccccccccCCCC--chHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccCccCcCccCh------hhhc
Q 046000           30 SQESFELNLAKNNIGGH--LLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPI------SSLA  101 (470)
Q Consensus        30 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~------~~l~  101 (470)
                      ++.|++|++++|+++..  .+..+..+++|+.|++++|.|++..+-......+|+.|++++|++......      ..+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            78899999999998864  345678899999999999999865444455667899999999998754331      3467


Q ss_pred             cccccceec
Q 046000          102 NHSKLKVLR  110 (470)
Q Consensus       102 ~~~~L~~L~  110 (470)
                      .+|+|+.|+
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            789999886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.23  E-value=4.2e-07  Score=71.30  Aligned_cols=109  Identities=9%  Similarity=0.035  Sum_probs=61.3

Q ss_pred             ccCCCeEEEccCc-cccCcccccc-----ccCcccEEEccCCcccccC----ccchhcCCCccEEEcCCccceee----c
Q 046000          351 NHGSLQLLSVSEN-CLSGFMTSSF-----SLSSLVHLYVQRNDLSGTI----PNALFRSSKLMTLDLRDNGFSGI----I  416 (470)
Q Consensus       351 ~~~~L~~L~l~~~-~l~~~~~~~~-----~~~~L~~L~l~~~~l~~~~----~~~l~~~~~L~~L~l~~n~l~~~----~  416 (470)
                      ..+.|++|+++++ .+.+.....+     ..++|++|++++|.+.+..    .+.+...++|+.|++++|.+...    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3456666666653 3433221111     3566777777777665332    23344556777777777776532    2


Q ss_pred             chhhhcCCCCcEEEccCcccCc-------ccchhhccCCCCCeEEccCcc
Q 046000          417 SDQINESSNLRVLLLRGNYLEG-------PISNQFCQLRRLGVMDLSHNR  459 (470)
Q Consensus       417 ~~~~~~~~~L~~L~l~~n~i~~-------~~~~~~~~l~~L~~l~l~~n~  459 (470)
                      ...+...++|++|++++|.+..       .+...+...++|+.|+++.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            2345556677777777765432       234455556777777776553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.03  E-value=3e-06  Score=66.28  Aligned_cols=99  Identities=11%  Similarity=0.214  Sum_probs=61.2

Q ss_pred             hHhhhcCCCCcEEEccCCccccc----cchhhhcCcCCcEEeccCccCcCccC---hhhhccccccceecccCCCCcccc
Q 046000           48 LDCLNNMTRLKVLDTSFNQLSGS----LPSVIVNLASVEYLDLSNSYFEGTFP---ISSLANHSKLKVLRLSSRNNNMLQ  120 (470)
Q Consensus        48 ~~~~~~~~~L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~  120 (470)
                      ..++...+.|++|+|++|.+.+.    +.+.+...+.|++|++++|.+.+...   ...+...++|++|+++++......
T Consensus        37 ~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g  116 (167)
T d1pgva_          37 IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLG  116 (167)
T ss_dssp             HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCC
T ss_pred             HHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCcc
Confidence            34566677788888887776532    33345566778888888887764322   234555677888888776544322


Q ss_pred             cc-ccCCCCcccccCcccEEEccCccc
Q 046000          121 LK-TENFLPTFQLKHDLKYLDLSHNNL  146 (470)
Q Consensus       121 ~~-~~~~~~~~~~~~~L~~L~l~~~~i  146 (470)
                      .. ...+...+...++|++++++.+..
T Consensus       117 ~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         117 NQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            11 223455566678888888877643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.98  E-value=1.1e-06  Score=68.90  Aligned_cols=96  Identities=11%  Similarity=0.179  Sum_probs=47.3

Q ss_pred             HhhhcCCCCcEEEccCCccccc----cchhhhcCcCCcEEeccCccCcCccC---hhhhccccccceecccCCCCccccc
Q 046000           49 DCLNNMTRLKVLDTSFNQLSGS----LPSVIVNLASVEYLDLSNSYFEGTFP---ISSLANHSKLKVLRLSSRNNNMLQL  121 (470)
Q Consensus        49 ~~~~~~~~L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~  121 (470)
                      .++...++|++|++++|.+.+.    +.+.+...+.++.+++++|.+.+...   ...+...++|+.++++.+.......
T Consensus        40 ~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~  119 (166)
T d1io0a_          40 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN  119 (166)
T ss_dssp             HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred             HHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHH
Confidence            3445667777777777766533    22334456667777777776643221   1234445555554444332221122


Q ss_pred             cccCCCCcccccCcccEEEccCc
Q 046000          122 KTENFLPTFQLKHDLKYLDLSHN  144 (470)
Q Consensus       122 ~~~~~~~~~~~~~~L~~L~l~~~  144 (470)
                      ....+...+...++|++|+++.+
T Consensus       120 ~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         120 VEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHHHhCCCcCEEeCcCC
Confidence            22233333444455555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.90  E-value=2.3e-06  Score=66.98  Aligned_cols=110  Identities=13%  Similarity=0.137  Sum_probs=65.0

Q ss_pred             hccCCCeEEEccCc-cccCcccccc-----ccCcccEEEccCCcccccC----ccchhcCCCccEEEcCCccceee----
Q 046000          350 LNHGSLQLLSVSEN-CLSGFMTSSF-----SLSSLVHLYVQRNDLSGTI----PNALFRSSKLMTLDLRDNGFSGI----  415 (470)
Q Consensus       350 ~~~~~L~~L~l~~~-~l~~~~~~~~-----~~~~L~~L~l~~~~l~~~~----~~~l~~~~~L~~L~l~~n~l~~~----  415 (470)
                      ...+.|++|+++++ .+++.....+     ..++|++|++++|.+.+..    .+.+...++++.+++++|.+...    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            34567777777663 3433322221     4567777777777765432    23445557777777777776432    


Q ss_pred             cchhhhcCCCCcEEEcc--CcccCc----ccchhhccCCCCCeEEccCcc
Q 046000          416 ISDQINESSNLRVLLLR--GNYLEG----PISNQFCQLRRLGVMDLSHNR  459 (470)
Q Consensus       416 ~~~~~~~~~~L~~L~l~--~n~i~~----~~~~~~~~l~~L~~l~l~~n~  459 (470)
                      +...+...++|++++|+  +|++..    .+...+...+.|+.|+++.++
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            23455666777765553  455543    445556667777887776654