Citrus Sinensis ID: 046006

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Protein Sequence
MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVLLLDDKWERVDLNKGLFVCGLVEANKNFKVECLSDNDAWELLRQKLAQTVAKKCVGLPLALITIGRAIACKRTPREWSLYPEDYLISKEILIYCWIDKFHI
Secondary Structure (PSIPRED)
cccccHHHHHHHHHcccccccccccEEEEEEEcccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccEEEEEccccccccccccHHHHHHHcccccEEcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHcccHHccccccEEEEEEEcccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccEEEEEccHHHHHHccccHHHHHHHcccccEEEccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHccccccccEcHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MGGVGKTTLLTHInnkflvsstdfdcVIWIVVSKDLQLEKIQEIVGKkvglldgdswknknSEEKALEIFRFLSKKKFVLLLddkwervdlnKGLFVCGLVEanknfkveclsdNDAWELLRQKLAQTVAKKCVGLPLALITIGRAIackrtprewslypedyliSKEILIYCWIDKFHI
Flexible Loop (DISEMBL)
MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIvgkkvglldgdswknkNSEEKALEIFRFLSKKKFVLLLDDKWERVDLNKGLFVCGLVEANKNFKVECLSDNDAWELLRQKLAQTVAKKCVGLPLALITigraiackrtprewslypedyliskEILIYCWIDKFHI
Low Complexity Region (SEG)
MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVLLLDDKWERVDLNKGLFVCGLVEANKNFKVECLSDNDAWELLRQKLAQTVAKKCVGLPLALITIGRAIACKRTPREWSLYPEDYLISKEILIYCWIDKFHI
Disordered region (IsUnstruct)
******TTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVLLLDDKWERVDLNKGLFVCGLVEANKNFKVECLSDNDAWELLRQKLAQTVAKKCVGLPLALITIGRAIACKRTPREWSLYPEDYLISKEILIYCWIDKF**
Disordered Region (DISOPRED)
MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLL*************ALEIFRFLSKKKFVLLLDDKWERVDLNKGLFVCGLVEANKNFKVECLSDNDAWELLRQKLAQTVAKKCVGLPLALITIGRAIACKRTPREWSLYPEDYLISKEILIYCWIDKFHI
Disordered Region (DISEMBL)
MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVLLLDDKWERVDLNKGLFVCGLVEANKNFKVECLSDNDAWELLRQKLAQTVAKKCVGLPLALITIGRAIACKRTPREWSLYPEDYLISKEILIYCWIDKFHI
Disordered Region (DISPRO)
**GVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVLLLDDKWERVDLNKGLFVCGLVEANKNFKVECLSDNDAWELLRQKLAQTVAKKCVGLPLALITIGRAIACKRTPREWSLYPEDYLISKEILIYCWIDKFHI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVLLLDDKWERVDLNKGLFVCGLVEANKNFKVECLSDNDAWELLRQKLAQTVAKKCVGLPLALITIGRAIACKRTPREWSLYPEDYLISKEILIYCWIDKFHI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	180	2.2.26 [Sep-21-2011]
O82484	892	Putative disease resistan	yes	no	0.966	0.195	0.384	1e-34
P60838	894	Probable disease resistan	no	no	0.966	0.194	0.382	2e-34
P60839	884	Probable disease resistan	no	no	0.966	0.196	0.369	3e-34
Q8L3R3	885	Disease resistance protei	no	no	0.966	0.196	0.378	2e-33
Q9SSR8	375	Probable disease resistan	no	no	0.866	0.416	0.440	2e-33
Q8RXS5	888	Probable disease resistan	no	no	0.861	0.174	0.439	3e-33
O64973	889	Disease resistance protei	no	no	0.994	0.201	0.369	3e-33
O64790	762	Probable disease resistan	no	no	0.861	0.203	0.449	4e-33
Q9LW09	375	Putative disease resistan	no	no	0.866	0.416	0.450	9e-33
Q9LMP6	851	Probable disease resistan	no	no	0.961	0.203	0.392	2e-32

>sp|O82484|DRL23_ARATH Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1

 Score =  145 bits (366), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/252 (38%), Positives = 121/252 (48%), Gaps = 78/252 (30%)

Query: 1   MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNK 60
           MGGVGKTTLLT I+N    +    D VIW+VVS DLQ+ KIQE +G+K+G + G  W  K
Sbjct: 181 MGGVGKTTLLTQIHNTLHDTKNGVDIVIWVVVSSDLQIHKIQEDIGEKLGFI-GKEWNKK 239

Query: 61  NSEEKALEIFRFLSKKKFVLLLDDKWERVDLNK-------------------GLFVCGLV 101
              +KA++I   LSKK+FVLLLDD W++VDL K                    L VC  +
Sbjct: 240 QESQKAVDILNCLSKKRFVLLLDDIWKKVDLTKIGIPSQTRENKCKVVFTTRSLDVCARM 299

Query: 102 EANKNFKVECLSDNDAWELLRQK--------------LAQTVAKKCVGLPLALITIGRAI 147
             +   +V+CLS NDAWEL ++K              LA+ VA KC GLPLAL  IG  +
Sbjct: 300 GVHDPMEVQCLSTNDAWELFQEKVGQISLGSHPDILELAKKVAGKCRGLPLALNVIGETM 359

Query: 148 ACKRTPREW--------------------------------------------SLYPEDY 163
           A KR  +EW                                            +LYPEDY
Sbjct: 360 AGKRAVQEWHHAVDVLTSYAAEFSGMDDHILLILKYSYDNLNDKHVRSCFQYCALYPEDY 419

Query: 164 LISKEILIYCWI 175
            I K  LI  WI
Sbjct: 420 SIKKYRLIDYWI 431

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score =  144 bits (364), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/251 (38%), Positives = 122/251 (48%), Gaps = 77/251 (30%)

Query: 1   MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNK 60
           MGGVGKTTLLT INNKF    + F  VIW+VVSK   + +IQ  +GK++  L G+ W N 
Sbjct: 184 MGGVGKTTLLTRINNKFSEKCSGFGVVIWVVVSKSPDIHRIQGDIGKRLD-LGGEEWDNV 242

Query: 61  NSEEKALEIFRFLSKKKFVLLLDDKWERVDLN-------------KGLF------VCGLV 101
           N  ++AL+I+  L K+KFVLLLDD WE+V+L              K +F      VCG +
Sbjct: 243 NENQRALDIYNVLGKQKFVLLLDDIWEKVNLEVLGVPYPSRQNGCKVVFTTRSRDVCGRM 302

Query: 102 EANKNFKVECLSDNDAWELLRQK--------------LAQTVAKKCVGLPLALITIGRAI 147
             +   +V CL  N+AWEL + K              LA+ VA KC GLPLAL  IG  +
Sbjct: 303 RVDDPMEVSCLEPNEAWELFQMKVGENTLKGHPDIPELARKVAGKCCGLPLALNVIGETM 362

Query: 148 ACKRTPREW-------------------------------------------SLYPEDYL 164
           ACKR  +EW                                           SL+PEDY 
Sbjct: 363 ACKRMVQEWRNAIDVLSSYAAEFPGMEQILPILKYSYDNLNKEQVKPCFLYCSLFPEDYR 422

Query: 165 ISKEILIYCWI 175
           + KE LI  WI
Sbjct: 423 MEKERLIDYWI 433

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60839|DRL2_ARATH Probable disease resistance protein At1g12290 OS=Arabidopsis thaliana GN=At1g12290 PE=2 SV=1

 Score =  144 bits (363), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/252 (36%), Positives = 125/252 (49%), Gaps = 78/252 (30%)

Query: 1   MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNK 60
           MGGVGKTTLLT INN+F  +    + VIW+VVS DLQ+ KIQ+ +G+K+G + G  W  K
Sbjct: 183 MGGVGKTTLLTQINNRFCDTDDGVEIVIWVVVSGDLQIHKIQKEIGEKIGFI-GVEWNQK 241

Query: 61  NSEEKALEIFRFLSKKKFVLLLDDKWERVDL-------------------NKGLFVCGLV 101
           +  +KA++I  FLSKK+FVLLLDD W+RV+L                    +   VC  +
Sbjct: 242 SENQKAVDILNFLSKKRFVLLLDDIWKRVELTEIGIPNPTSENGCKIAFTTRCQSVCASM 301

Query: 102 EANKNFKVECLSDNDAWELLRQK--------------LAQTVAKKCVGLPLALITIGRAI 147
             +   +V CL  +DAW+L ++K              +A+ VA+ C GLPLAL  IG  +
Sbjct: 302 GVHDPMEVRCLGADDAWDLFKKKVGDITLSSHPDIPEIARKVAQACCGLPLALNVIGETM 361

Query: 148 ACKRTPREW--------------------------------------------SLYPEDY 163
           ACK+T +EW                                            SL+PED 
Sbjct: 362 ACKKTTQEWDRAVDVSTTYAANFGAVKERILPILKYSYDNLESESVKTCFLYCSLFPEDD 421

Query: 164 LISKEILIYCWI 175
           LI KE LI  WI
Sbjct: 422 LIEKERLIDYWI 433

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score =  142 bits (357), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/251 (37%), Positives = 127/251 (50%), Gaps = 77/251 (30%)

Query: 1   MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNK 60
           MGGVGKTTLLT INNKF      FD VIW+VVSK+  + KIQ+ +G+K+GL+ G +W  K
Sbjct: 184 MGGVGKTTLLTQINNKFSKLGGGFDVVIWVVVSKNATVHKIQKSIGEKLGLV-GKNWDEK 242

Query: 61  NSEEKALEIFRFLSKKKFVLLLDDKWERVDLN-------------KGLF------VCGLV 101
           N  ++AL+I   L +KKFVLLLDD WE+V+L              K  F      VCG +
Sbjct: 243 NKNQRALDIHNVLRRKKFVLLLDDIWEKVELKVIGVPYPSGENGCKVAFTTHSKEVCGRM 302

Query: 102 EANKNFKVECLSDNDAWELLRQK--------------LAQTVAKKCVGLPLALITIGRAI 147
             +   ++ CL   +AW+LL++K              LA+ V++KC GLPLAL  IG  +
Sbjct: 303 GVDNPMEISCLDTGNAWDLLKKKVGENTLGSHPDIPQLARKVSEKCCGLPLALNVIGETM 362

Query: 148 ACKRTPREW-------------------------------------------SLYPEDYL 164
           + KRT +EW                                           SL+PED+ 
Sbjct: 363 SFKRTIQEWRHATEVLTSATDFSGMEDEILPILKYSYDSLNGEDAKSCFLYCSLFPEDFE 422

Query: 165 ISKEILIYCWI 175
           I KE+LI  WI
Sbjct: 423 IRKEMLIEYWI 433

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSR8|DRL6_ARATH Probable disease resistance protein At1g52660 OS=Arabidopsis thaliana GN=At1g52660 PE=2 SV=1

 Score =  141 bits (356), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/193 (44%), Positives = 117/193 (60%), Gaps = 37/193 (19%)

Query: 3   GVGKTTLLTHINNKFLVSSTD-FDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKN 61
           GVGKTT+LT +NN+ L    + FD V+W+ VSK+L L+KIQ+ + +K+G LD  +W +K+
Sbjct: 170 GVGKTTVLTQVNNRLLQQKANGFDFVLWVFVSKNLNLQKIQDTIREKIGFLD-RTWTSKS 228

Query: 62  SEEKALEIFRFLSKKKFVLLLDDKWERVDLNKG-------------LF------VCGLVE 102
            EEKA +IF  LSK++F L LDD WE+VDL K              +F      VC  + 
Sbjct: 229 EEEKAAKIFEILSKRRFALFLDDVWEKVDLVKAGVPPPDAQNRSKIVFTTCSEEVCKEMS 288

Query: 103 ANKNFKVECLSDNDAWELLRQ--------------KLAQTVAKKCVGLPLALITIGRAIA 148
           A    KVE L+   AW+L ++              K+AQ VA +C GLPLAL+TIGRA+A
Sbjct: 289 AQTKIKVEKLAWERAWDLFKKNVGEDTIKSHPDIAKVAQEVAARCDGLPLALVTIGRAMA 348

Query: 149 CKRTPREW--SLY 159
            K+TP+EW  +LY
Sbjct: 349 SKKTPQEWRDALY 361

Possible disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score =  140 bits (354), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/189 (43%), Positives = 113/189 (59%), Gaps = 34/189 (17%)

Query: 1   MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNK 60
           MGGVGKTTLL+HINN+F     +FD VIWIVVSK+LQ+++IQ+ + +K+   D + WK K
Sbjct: 182 MGGVGKTTLLSHINNRFSRVGGEFDIVIWIVVSKELQIQRIQDEIWEKLR-SDNEKWKQK 240

Query: 61  NSEEKALEIFRFLSKKKFVLLLDDKWERVDLN-------------KGLF------VCGLV 101
             + KA  I+  L  K+FVLLLDD W +VDL              K +F      +CG +
Sbjct: 241 TEDIKASNIYNVLKHKRFVLLLDDIWSKVDLTEVGVPFPSRENGCKIVFTTRLKEICGRM 300

Query: 102 EANKNFKVECLSDNDAWELLRQK--------------LAQTVAKKCVGLPLALITIGRAI 147
             + + +V CL+ +DAW+L  +K              +A+TVAKKC GLPLAL  IG  +
Sbjct: 301 GVDSDMEVRCLAPDDAWDLFTKKVGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGETM 360

Query: 148 ACKRTPREW 156
           A KRT +EW
Sbjct: 361 AYKRTVQEW 369

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score =  140 bits (354), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/257 (36%), Positives = 121/257 (47%), Gaps = 78/257 (30%)

Query: 1   MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNK 60
           MGGVGKTTLLT INNKF      FD VIW+VVS+   + KIQ  + +KVG L G  W  K
Sbjct: 184 MGGVGKTTLLTKINNKFSKIDDRFDVVIWVVVSRSSTVRKIQRDIAEKVG-LGGMEWSEK 242

Query: 61  NSEEKALEIFRFLSKKKFVLLLDDKWERVDL-------------------NKGLFVCGLV 101
           N  + A++I   L ++KFVLLLDD WE+V+L                    +   VCG +
Sbjct: 243 NDNQIAVDIHNVLRRRKFVLLLDDIWEKVNLKAVGVPYPSKDNGCKVAFTTRSRDVCGRM 302

Query: 102 EANKNFKVECLSDNDAWELLRQK--------------LAQTVAKKCVGLPLALITIGRAI 147
             +   +V CL   ++W+L + K              LA+ VA+KC GLPLAL  IG A+
Sbjct: 303 GVDDPMEVSCLQPEESWDLFQMKVGKNTLGSHPDIPGLARKVARKCRGLPLALNVIGEAM 362

Query: 148 ACKRTPREW--------------------------------------------SLYPEDY 163
           ACKRT  EW                                            SL+PEDY
Sbjct: 363 ACKRTVHEWCHAIDVLTSSAIDFSGMEDEILHVLKYSYDNLNGELMKSCFLYCSLFPEDY 422

Query: 164 LISKEILIYCWIDKFHI 180
           LI KE L+  WI +  I
Sbjct: 423 LIDKEGLVDYWISEGFI 439

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|O64790|DRL17_ARATH Probable disease resistance protein At1g61300 OS=Arabidopsis thaliana GN=At1g61300 PE=2 SV=2

 Score =  140 bits (354), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 85/189 (44%), Positives = 107/189 (56%), Gaps = 34/189 (17%)

Query: 1   MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNK 60
           MGGVGKTTL   I+NKF   S+ FD VIWIVVSK  +L K+QE + +K+ L D D WKNK
Sbjct: 69  MGGVGKTTLFKKIHNKFAKMSSRFDIVIWIVVSKGAKLSKLQEDIAEKLHLCD-DLWKNK 127

Query: 61  NSEEKALEIFRFLSKKKFVLLLDDKWERVDL-------------------NKGLFVCGLV 101
           N  +KA +I R L  K+FVL+LDD WE+VDL                    +   VCG +
Sbjct: 128 NESDKATDIHRVLKGKRFVLMLDDIWEKVDLEAIGVPYPSEVNKCKVAFTTRDQKVCGEM 187

Query: 102 EANKNFKVECLSDNDAWELLRQK--------------LAQTVAKKCVGLPLALITIGRAI 147
             +K  +V+CL   DAWEL + K              LA+ VA+KC GLPLAL  IG  +
Sbjct: 188 GDHKPMQVKCLEPEDAWELFKNKVGDNTLRSDPVIVELAREVAQKCRGLPLALSVIGETM 247

Query: 148 ACKRTPREW 156
           A K   +EW
Sbjct: 248 ASKTMVQEW 256

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW09|DRL22_ARATH Putative disease resistance protein At3g15700 OS=Arabidopsis thaliana GN=At3g15700 PE=3 SV=1

 Score =  139 bits (350), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 87/193 (45%), Positives = 114/193 (59%), Gaps = 37/193 (19%)

Query: 3   GVGKTTLLTHINNKFLVSSTD-FDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKN 61
           GVGKTT+LT +NN+ L    + FD VIW+ VSK++ LEKIQ+ + +K+G LD  SW +K 
Sbjct: 170 GVGKTTVLTQVNNRLLQHKLNGFDFVIWVFVSKNVNLEKIQDTIREKIGFLD-RSWMSKT 228

Query: 62  SEEKALEIFRFLSKKKFVLLLDDKWERVDLNKG-------------LF------VCGLVE 102
            EEKA +IF  LSK++F L LDD WE+VDL K              +F      VC  + 
Sbjct: 229 EEEKAGKIFEILSKRRFALFLDDVWEKVDLVKAGVPPPDGLNRSKIVFTTCSDEVCQEMG 288

Query: 103 ANKNFKVECLSDNDAWELLRQ--------------KLAQTVAKKCVGLPLALITIGRAIA 148
           A    K+E L    AW+L +               K+AQ VA KC GLPLAL+TIGRA+A
Sbjct: 289 AQTKIKMEKLPWERAWDLFKMNAGEEIVKSHPDITKVAQEVAAKCDGLPLALVTIGRAMA 348

Query: 149 CKRTPREW--SLY 159
            K+TP+EW  +LY
Sbjct: 349 SKKTPQEWRDALY 361

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LMP6|DRL3_ARATH Probable disease resistance protein At1g15890 OS=Arabidopsis thaliana GN=At1g15890 PE=3 SV=2

 Score =  138 bits (348), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/252 (39%), Positives = 122/252 (48%), Gaps = 79/252 (31%)

Query: 1   MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNK 60
           MGGVGKTTLL  INNKFL     FD VIW+VVSKDLQ E IQE +  ++GL  G  WK  
Sbjct: 182 MGGVGKTTLLASINNKFLEGMNGFDLVIWVVVSKDLQNEGIQEQILGRLGLHRG--WKQV 239

Query: 61  NSEEKALEIFRFLSKKKFVLLLDDKWERVDLNK-GLF------------------VCGLV 101
             +EKA  I   L+ KKFVLLLDD W  VDL K G+                   VC  +
Sbjct: 240 TEKEKASYICNILNVKKFVLLLDDLWSEVDLEKIGVPPLTRENGSKIVFTTRSKDVCRDM 299

Query: 102 EANKNFKVECLSDNDAWELLRQK--------------LAQTVAKKCVGLPLALITIGRAI 147
           E +   KV+CL  ++AWEL ++K              LA+ VA+KC GLPLAL  IG+A+
Sbjct: 300 EVDGEMKVDCLPPDEAWELFQKKVGPIPLQSHEDIPTLARKVAEKCCGLPLALSVIGKAM 359

Query: 148 ACKRTPREW--------------------------------------------SLYPEDY 163
           A + T +EW                                            SL+PEDY
Sbjct: 360 ASRETVQEWQHVIHVLNSSSHEFPSMEEKILPVLKFSYDDLKDEKVKLCFLYCSLFPEDY 419

Query: 164 LISKEILIYCWI 175
            + KE LI  W+
Sbjct: 420 EVRKEELIEYWM 431

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
24461866	890	NBS-LRR type disease resistance protein	0.966	0.195	0.515	5e-56
24461861	890	NBS-LRR type disease resistance protein	0.966	0.195	0.505	1e-53
408683737	580	NBS-LRR disease resistance protein NBS39	0.966	0.3	0.470	7e-50
24461865	892	NBS-LRR type disease resistance protein	0.966	0.195	0.478	1e-45
24461864	899	NBS-LRR type disease resistance protein	0.966	0.193	0.452	6e-45
224055915	880	cc-nbs-lrr resistance protein [Populus t	0.966	0.197	0.436	3e-43
313104357	171	resistance-like protein 4 [Citrus sinens	0.761	0.801	0.598	4e-42
24461863	889	NBS-LRR type disease resistance protein	0.966	0.195	0.450	6e-41
255553135	894	Disease resistance protein RFL1, putativ	0.866	0.174	0.497	8e-40
225443158	903	PREDICTED: probable disease resistance p	0.966	0.192	0.412	2e-39

>gi|24461866|gb|AAN62353.1|AF506028_20 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  222 bits (565), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 130/252 (51%), Positives = 155/252 (61%), Gaps = 78/252 (30%)

Query: 1   MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNK 60
           MGGVGKTTLLTHINNKFL S+T+F+ VIW+VVSKDL+LE IQE +G+K+GLL+ D+WKN+
Sbjct: 183 MGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLN-DTWKNR 241

Query: 61  NSEEKALEIFRFLSKKKFVLLLDDKWERVDL--------------NKGLF------VCGL 100
             E+KAL+IF+ L +KKFVLLLDD W+RVDL              +K +F      VCGL
Sbjct: 242 RIEQKALDIFKILKEKKFVLLLDDLWQRVDLVEVGVPLPGPQSSTSKVVFTSRSEEVCGL 301

Query: 101 VEANKNFKVECLSDNDAWELLRQK-------------LAQTVAKKCVGLPLALITIGRAI 147
           +EA+K FKV CLSD DAWEL +QK             LAQT AK+C GLPLALITIGRA+
Sbjct: 302 MEAHKKFKVACLSDIDAWELFQQKVGEETLKSPDIRQLAQTAAKECGGLPLALITIGRAM 361

Query: 148 ACKRTPREWS--------------------------------------------LYPEDY 163
           ACK+TP EW+                                            LYPEDY
Sbjct: 362 ACKKTPEEWTYAIEVLRTSSSQFPGLGNEVYPLLKFSYDSLPSDTIRSCLLYCCLYPEDY 421

Query: 164 LISKEILIYCWI 175
            ISKEILI CWI
Sbjct: 422 CISKEILIDCWI 433

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461861|gb|AAN62348.1|AF506028_15 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 128/253 (50%), Positives = 151/253 (59%), Gaps = 79/253 (31%)

Query: 1   MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNK 60
           MGGVGKTTLLTHINNKFL S T+FD VI +VVSKDL+LE IQE++G+K+GLL+ D+WK++
Sbjct: 184 MGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLN-DAWKSR 242

Query: 61  NSEEKALEIFRFLSKKKFVLLLDDKWERVDL--------------NKGLF------VCGL 100
             E+KAL+IFR L  K FV+LLDD W+RVDL              +K +F      VCGL
Sbjct: 243 RIEQKALDIFRILRGKNFVVLLDDIWQRVDLAKVGIPLPNSQTSASKVVFTTRSEEVCGL 302

Query: 101 VEANKNFKVECLSDNDAWELLRQK--------------LAQTVAKKCVGLPLALITIGRA 146
           +EA+K FKVECLS NDAWEL RQK              LAQTV K+C GLPLALITIGRA
Sbjct: 303 MEAHKKFKVECLSGNDAWELFRQKVGEETLNCHHDILELAQTVTKECGGLPLALITIGRA 362

Query: 147 IACKRTPREWS--------------------------------------------LYPED 162
           +ACK+TP EWS                                            LYPED
Sbjct: 363 MACKKTPEEWSYAIQVLRTSSSQFPGLGNEVYPLLKFSYDNLPNDTIRSCLLYCCLYPED 422

Query: 163 YLISKEILIYCWI 175
             ISKE L+ CWI
Sbjct: 423 CCISKENLVDCWI 435

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|408683737|gb|AFM77964.2| NBS-LRR disease resistance protein NBS39 [Dimocarpus longan]

 Score =  201 bits (512), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 121/257 (47%), Positives = 149/257 (57%), Gaps = 83/257 (32%)

Query: 1   MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNK 60
           MGGVGKTTLLT INNKF+  S DFD V+W+VVSKDLQLEKIQE +G+K+GL D +SW++K
Sbjct: 134 MGGVGKTTLLTQINNKFVDVSNDFDIVMWVVVSKDLQLEKIQENIGRKIGLSD-ESWRSK 192

Query: 61  NSEEKALEIFRFLSKKKFVLLLDDKWERVDL------------------NKGLF------ 96
           + EEKA++IF+ L +K+FVLLLDD WERVDL                  +K +F      
Sbjct: 193 SLEEKAMDIFKILRRKRFVLLLDDIWERVDLVKVGVPPLSSPPLSSSFTSKVVFTTRFVE 252

Query: 97  VCGLVEANKNFKVECLSDNDAWELLRQK--------------LAQTVAKKCVGLPLALIT 142
           VCG +EA++  KVECL+D +AW+L R K              LAQT AK+C GLPLALIT
Sbjct: 253 VCGHMEAHRKLKVECLADEEAWKLFRSKVGGDALDNHPEIPELAQTAAKECGGLPLALIT 312

Query: 143 IGRAIACKRTPREW--------------------------------------------SL 158
           IGRA+ACK+TP EW                                            SL
Sbjct: 313 IGRAMACKKTPAEWRYAIEVLRRSAHEFPGLGKEVYPLLKFSYDSLPSCTLRACLLYCSL 372

Query: 159 YPEDYLISKEILIYCWI 175
           +PEDY I K+ LI CWI
Sbjct: 373 FPEDYNIPKKHLIDCWI 389

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461865|gb|AAN62352.1|AF506028_19 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 121/253 (47%), Positives = 146/253 (57%), Gaps = 79/253 (31%)

Query: 1   MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNK 60
           MGGVGKTTLLTHI+NKF+ S T+F+ VIW+V SKDL+LE IQE +G+++GLL+ D+WKNK
Sbjct: 183 MGGVGKTTLLTHIHNKFIQSPTNFNYVIWVVASKDLRLENIQETIGEQIGLLN-DTWKNK 241

Query: 61  NSEEKALEIFRFLSKKKFVLLLDDKWERVDLNK--------------------GLFVCGL 100
             E+KA +IFR L +KKF+LLLDD W+RVDL K                       VCGL
Sbjct: 242 RIEQKAQDIFRILKQKKFLLLLDDLWQRVDLTKVGVPLPGPQNNASKVVFTTRSEEVCGL 301

Query: 101 VEANKNFKVECLSDNDAWELLRQ--------------KLAQTVAKKCVGLPLALITIGRA 146
           + A+  FKV CLS+ DAWEL RQ              +LAQT A++C GLPLALITIGRA
Sbjct: 302 MGAHTRFKVACLSNIDAWELFRQNVGEETMNSHPDILQLAQTAARECGGLPLALITIGRA 361

Query: 147 IACKRTPREW--------------------------------------------SLYPED 162
           +ACK+TP EW                                            SLYPED
Sbjct: 362 MACKKTPEEWSYAIEVLRTSSSQFPGLGNEVYPLLKFSYDSLPSDTIRSCHLYCSLYPED 421

Query: 163 YLISKEILIYCWI 175
           Y ISKE LI CWI
Sbjct: 422 YCISKEKLIDCWI 434

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461864|gb|AAN62351.1|AF506028_18 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  185 bits (470), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 115/254 (45%), Positives = 137/254 (53%), Gaps = 80/254 (31%)

Query: 1   MGGVGKTTLLTHINNKFLVSST-DFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKN 59
           MGGVGKTTLLTH+NNKFL      FD +IW+VVSKDLQ+EKIQEI+GKKVGL + DSW  
Sbjct: 184 MGGVGKTTLLTHLNNKFLGQRDFHFDFLIWVVVSKDLQIEKIQEIIGKKVGLFN-DSWMK 242

Query: 60  KNSEEKALEIFRFLSKKKFVLLLDDKWERVDL--------------------NKGLFVCG 99
           KN  E+A++I+  L +KKFVLLLDD W+RVD                      +   VCG
Sbjct: 243 KNLAERAVDIYNVLKEKKFVLLLDDVWQRVDFATVGVPIPPRDKSASKVVFTTRSTEVCG 302

Query: 100 LVEANKNFKVECLSDNDAWELLRQ--------------KLAQTVAKKCVGLPLALITIGR 145
            + A+K  +VECLS NDAWEL RQ              +LA+ VAK+C  LPLALI  GR
Sbjct: 303 RMGAHKKIEVECLSANDAWELFRQNVGEETLNGQPKILELAERVAKECGCLPLALIVTGR 362

Query: 146 AIACKRTPREWS--------------------------------------------LYPE 161
           A+ACK+TP EW                                             L+PE
Sbjct: 363 AMACKKTPAEWRDAIKVLQTSASEFPGLENNVLRVLKFSYDSLPDDTTRSCLLYCCLFPE 422

Query: 162 DYLISKEILIYCWI 175
           DY I KE LI CWI
Sbjct: 423 DYRIYKENLIDCWI 436

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055915|ref|XP_002298700.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222845958|gb|EEE83505.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/252 (43%), Positives = 144/252 (57%), Gaps = 78/252 (30%)

Query: 1   MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNK 60
           MGGVGKTTLLT INN+ L +  DFD VIW+VVSKDL+L  +QE +G+ +G  D D WKNK
Sbjct: 183 MGGVGKTTLLTQINNESLKTPDDFDIVIWVVVSKDLKLNTVQESIGRNIGCSD-DLWKNK 241

Query: 61  NSEEKALEIFRFLSKKKFVLLLDDKWERVDL-------------NKGLF------VCGLV 101
           + +EKA++IF  L  K+FV+LLDD WERVDL             +K +F      +CGL+
Sbjct: 242 SLDEKAVDIFNALRHKRFVMLLDDIWERVDLKKLGVPLPDMNNGSKVVFTTRSEEICGLM 301

Query: 102 EANKNFKVECLSDNDAWELLRQ--------------KLAQTVAKKCVGLPLALITIGRAI 147
           +A+K  KV+CL+ +DAW+L ++              KLA+ VAK+C GLPLALITIGRA+
Sbjct: 302 DAHKTMKVDCLAWDDAWDLFQKKVGDQTLCVHTDIPKLARNVAKECGGLPLALITIGRAM 361

Query: 148 ACKRTPREW--------------------------------------------SLYPEDY 163
           ACK+TP+EW                                            SL+PED+
Sbjct: 362 ACKKTPQEWRHAIEVLRKSASEFSGMGDEVFPLLKFSYDNLSKQKIRTCFLYCSLFPEDF 421

Query: 164 LISKEILIYCWI 175
           LI+K  LI  WI
Sbjct: 422 LINKNDLIDYWI 433

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313104357|gb|ADR31557.1| resistance-like protein 4 [Citrus sinensis]

 Score =  176 bits (446), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 103/172 (59%), Positives = 116/172 (67%), Gaps = 35/172 (20%)

Query: 3   GVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNS 62
           GVGKTTLLT +NNKFL     FD VIW+VVSKDLQLEKIQE +GKK+GL DG  WKN++ 
Sbjct: 1   GVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDG-LWKNRSR 59

Query: 63  EEKALEIFRFLSKKKFVLLLDDKWERVDLNKG--------------------LFVCGLVE 102
           EEKAL+IF+ LSKKKFVLLLDD WERVDL K                     L VCGL+E
Sbjct: 60  EEKALDIFKVLSKKKFVLLLDDLWERVDLTKVGVPVPNSRNVASKVVFTTRLLDVCGLME 119

Query: 103 ANKNFKVECLSDNDAWELLRQK--------------LAQTVAKKCVGLPLAL 140
           A+K FKVECLSD DAW+L R+K              LAQ VAK+C GLPLAL
Sbjct: 120 AHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLAL 171

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461863|gb|AAN62350.1|AF506028_17 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  172 bits (435), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 114/253 (45%), Positives = 137/253 (54%), Gaps = 79/253 (31%)

Query: 1   MGGVGKTTLLTHINNKFLVSST-DFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKN 59
           MGGVGKTTLLTH+NNKFL      FD +IW+VVSKDLQ+EKIQEI+GKKVG  + DSW  
Sbjct: 174 MGGVGKTTLLTHLNNKFLGQRDFHFDFLIWVVVSKDLQIEKIQEIIGKKVGFFN-DSWMK 232

Query: 60  KNSEEKALEIFRFLSKKKFVLLLDDKWERVDL--------------NKGLF------VCG 99
           KN  E+A++I+  L +KKFVLLLDD W+RVD               +K +F      VC 
Sbjct: 233 KNLAERAVDIYNVLKEKKFVLLLDDVWQRVDFATVGVPIPPRDKSASKVVFTTRSAEVCV 292

Query: 100 LVEANKNFKVECLSDNDAWELLRQ--------------KLAQTVAKKCVGLPLALITIGR 145
            + A+K F V CLS NDAWEL RQ              +LAQ VA++C GLPLALITIG+
Sbjct: 293 WMGAHKKFGVGCLSANDAWELFRQNVGEETLTSDHDIAELAQIVAEECGGLPLALITIGQ 352

Query: 146 AIACKRTPREWS-------------------------------------------LYPED 162
           A+A K+T  EW                                            LYP+D
Sbjct: 353 AMAYKKTVEEWRHAIEVLRRSASEFPGFDNVLRVFKFSYDSLPDDTTRSCFLYCCLYPKD 412

Query: 163 YLISKEILIYCWI 175
           Y I K  LI CWI
Sbjct: 413 YGILKWDLIDCWI 425

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553135|ref|XP_002517610.1| Disease resistance protein RFL1, putative [Ricinus communis] gi|223543242|gb|EEF44774.1| Disease resistance protein RFL1, putative [Ricinus communis]

 Score =  168 bits (426), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 94/189 (49%), Positives = 122/189 (64%), Gaps = 33/189 (17%)

Query: 1   MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNK 60
           MGGVGKTT+LT INN F+ S  DF  VIW+VVSKDL+L+K+QE + K++GL D   WKNK
Sbjct: 171 MGGVGKTTILTQINNMFVTSPNDFVAVIWVVVSKDLRLDKVQEEIAKRIGLSDDQQWKNK 230

Query: 61  NSEEKALEIFRFLSKKKFVLLLDDKWERVDL-------------NKGLF------VCGLV 101
           N  +KA +IFR L K+KFVLLLDD W+R++L             +K +F      VC  +
Sbjct: 231 NFSDKAEDIFRVLHKRKFVLLLDDIWKRLELKEVGVPLPKRQSRSKIVFTARSEAVCSSM 290

Query: 102 EANKNFKVECLSDNDAWELLRQK--------------LAQTVAKKCVGLPLALITIGRAI 147
           EA K  KVE L   +AWEL ++K              +A+ VA+KC GLPLAL+TI RA+
Sbjct: 291 EAQKKIKVEPLEWLEAWELFQEKVGGDTLRAHPEIPLIAEAVARKCGGLPLALVTIARAM 350

Query: 148 ACKRTPREW 156
           AC+RT +EW
Sbjct: 351 ACRRTLQEW 359

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443158|ref|XP_002263674.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/252 (41%), Positives = 134/252 (53%), Gaps = 78/252 (30%)

Query: 1   MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNK 60
           MGGVGKTTL+T +NN+FL +   FD VIW+VVS+D   EK+Q+ + KKVG  D D WK+K
Sbjct: 182 MGGVGKTTLMTQVNNEFLKTIHQFDIVIWVVVSRDPNPEKVQDEIWKKVGFCD-DKWKSK 240

Query: 61  NSEEKALEIFRFLSKKKFVLLLDDKWERVDL-------------NKGLF------VCGLV 101
           + +EKA+ IFR L KKKFVL LDD WER DL             +K +F      VCG +
Sbjct: 241 SQDEKAISIFRILGKKKFVLFLDDVWERFDLLKVGIPLPNQQNNSKLVFTTRSEEVCGRM 300

Query: 102 EANKNFKVECLSDNDAWELLRQ--------------KLAQTVAKKCVGLPLALITIGRAI 147
            A++  KVECL+   AW+L +               +LA+T+ K+C+GLPLAL+T GR +
Sbjct: 301 GAHRRIKVECLAWKQAWDLFQNMVGEDTLNSHPEIPQLAETIVKECLGLPLALVTTGRTM 360

Query: 148 ACKRTPREW--------------------------------------------SLYPEDY 163
           ACK+ P+EW                                            SLYPED 
Sbjct: 361 ACKKAPQEWKFAIKMLQSSSSSFPGMRDEVFSLLKFSYDNLPSDTARSCFLYCSLYPEDN 420

Query: 164 LISKEILIYCWI 175
            I KE LI CWI
Sbjct: 421 DIFKEDLIDCWI 432

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.511	0.104	0.559	3.8e-37
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.5	0.101	0.582	1e-36
TAIR|locus:2036214	851	AT1G15890 [Arabidopsis thalian	0.505	0.106	0.602	1.3e-35
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.511	0.103	0.537	2.6e-35
TAIR|locus:2197739	762	AT1G61300 [Arabidopsis thalian	0.5	0.118	0.593	9.2e-35
TAIR|locus:2170892	848	AT5G43730 [Arabidopsis thalian	0.5	0.106	0.531	1.7e-34
TAIR|locus:2093192	375	AT3G15700 [Arabidopsis thalian	0.5	0.24	0.554	2.7e-34
TAIR|locus:2170902	862	AT5G43740 [Arabidopsis thalian	0.5	0.104	0.521	4.6e-34
TAIR|locus:2031366	898	AT1G63350 "AT1G63350" [Arabido	0.5	0.100	0.505	7.1e-34
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.511	0.103	0.559	2.2e-33

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 3.8e-37, Sum P(3) = 3.8e-37
 Identities = 52/93 (55%), Positives = 70/93 (75%)

Query:     1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNK 60
             MGGVGKTTLLT INN+F  +    + VIW+VVS DLQ+ KIQ+ +G+K+G + G  W  K
Sbjct:   183 MGGVGKTTLLTQINNRFCDTDDGVEIVIWVVVSGDLQIHKIQKEIGEKIGFI-GVEWNQK 241

Query:    61 NSEEKALEIFRFLSKKKFVLLLDDKWERVDLNK 93
             +  +KA++I  FLSKK+FVLLLDD W+RV+L +
Sbjct:   242 SENQKAVDILNFLSKKRFVLLLDDIWKRVELTE 274

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.0e-36, Sum P(3) = 1.0e-36
 Identities = 53/91 (58%), Positives = 68/91 (74%)

Query:     1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNK 60
             MGGVGKTTLLT INNKF      FD VIW+VVSK+  + KIQ+ +G+K+GL+ G +W  K
Sbjct:   184 MGGVGKTTLLTQINNKFSKLGGGFDVVIWVVVSKNATVHKIQKSIGEKLGLV-GKNWDEK 242

Query:    61 NSEEKALEIFRFLSKKKFVLLLDDKWERVDL 91
             N  ++AL+I   L +KKFVLLLDD WE+V+L
Sbjct:   243 NKNQRALDIHNVLRRKKFVLLLDDIWEKVEL 273

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2036214 AT1G15890 [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
 Identities = 56/93 (60%), Positives = 62/93 (66%)

Query:     1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNK 60
             MGGVGKTTLL  INNKFL     FD VIW+VVSKDLQ E IQE +  ++GL  G  WK  
Sbjct:   182 MGGVGKTTLLASINNKFLEGMNGFDLVIWVVVSKDLQNEGIQEQILGRLGLHRG--WKQV 239

Query:    61 NSEEKALEIFRFLSKKKFVLLLDDKWERVDLNK 93
               +EKA  I   L+ KKFVLLLDD W  VDL K
Sbjct:   240 TEKEKASYICNILNVKKFVLLLDDLWSEVDLEK 272

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 2.6e-35, Sum P(3) = 2.6e-35
 Identities = 50/93 (53%), Positives = 67/93 (72%)

Query:     1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNK 60
             MGGVGKTTLL+HINN+F     +FD VIWIVVSK+LQ+++IQ+ + +K+   D + WK K
Sbjct:   182 MGGVGKTTLLSHINNRFSRVGGEFDIVIWIVVSKELQIQRIQDEIWEKLRS-DNEKWKQK 240

Query:    61 NSEEKALEIFRFLSKKKFVLLLDDKWERVDLNK 93
               + KA  I+  L  K+FVLLLDD W +VDL +
Sbjct:   241 TEDIKASNIYNVLKHKRFVLLLDDIWSKVDLTE 273

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2197739 AT1G61300 [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 9.2e-35, Sum P(3) = 9.2e-35
 Identities = 54/91 (59%), Positives = 66/91 (72%)

Query:     1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNK 60
             MGGVGKTTL   I+NKF   S+ FD VIWIVVSK  +L K+QE + +K+ L D D WKNK
Sbjct:    69 MGGVGKTTLFKKIHNKFAKMSSRFDIVIWIVVSKGAKLSKLQEDIAEKLHLCD-DLWKNK 127

Query:    61 NSEEKALEIFRFLSKKKFVLLLDDKWERVDL 91
             N  +KA +I R L  K+FVL+LDD WE+VDL
Sbjct:   128 NESDKATDIHRVLKGKRFVLMLDDIWEKVDL 158

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2170892 AT5G43730 [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.7e-34, Sum P(3) = 1.7e-34
 Identities = 50/94 (53%), Positives = 63/94 (67%)

Query:     1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQE-IVGKKVGLLDGDSWKN 59
             MGG+GKTTLL  +NNKF+   ++FD VIW+VVSKD QLE IQ+ I+G+   L     W+ 
Sbjct:   180 MGGIGKTTLLESLNNKFVELESEFDVVIWVVVSKDFQLEGIQDQILGR---LRPDKEWER 236

Query:    60 KNSEEKALEIFRFLSKKKFVLLLDDKWERVDLNK 93
             +   +KA  I   L +KKFVLLLDD W  VDL K
Sbjct:   237 ETESKKASLINNNLKRKKFVLLLDDLWSEVDLIK 270

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2093192 AT3G15700 [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
 Identities = 51/92 (55%), Positives = 67/92 (72%)

Query:     3 GVGKTTLLTHINNKFLVSSTD-FDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKN 61
             GVGKTT+LT +NN+ L    + FD VIW+ VSK++ LEKIQ+ + +K+G LD  SW +K 
Sbjct:   170 GVGKTTVLTQVNNRLLQHKLNGFDFVIWVFVSKNVNLEKIQDTIREKIGFLDR-SWMSKT 228

Query:    62 SEEKALEIFRFLSKKKFVLLLDDKWERVDLNK 93
              EEKA +IF  LSK++F L LDD WE+VDL K
Sbjct:   229 EEEKAGKIFEILSKRRFALFLDDVWEKVDLVK 260

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2170902 AT5G43740 [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 4.6e-34, Sum P(3) = 4.6e-34
 Identities = 49/94 (52%), Positives = 63/94 (67%)

Query:     1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDS-WKN 59
             MGGVGKTTLL  +NNKF+   ++FD VIW+VVSKD Q E IQ+ +   +G L  D  W+ 
Sbjct:   179 MGGVGKTTLLESLNNKFVELESEFDVVIWVVVSKDFQFEGIQDQI---LGRLRSDKEWER 235

Query:    60 KNSEEKALEIFRFLSKKKFVLLLDDKWERVDLNK 93
             +   +KA  I+  L +KKFVLLLDD W  VD+ K
Sbjct:   236 ETESKKASLIYNNLERKKFVLLLDDLWSEVDMTK 269

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.1e-34, Sum P(3) = 7.1e-34
 Identities = 46/91 (50%), Positives = 62/91 (68%)

Query:     1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNK 60
             MGGVGKTTLLT INNKF      FD VIW+VVSK++ +E I + + +KV +  G+ W  K
Sbjct:   180 MGGVGKTTLLTQINNKFSKYMCGFDSVIWVVVSKEVNVENILDEIAQKVHI-SGEKWDTK 238

Query:    61 NSEEKALEIFRFLSKKKFVLLLDDKWERVDL 91
                +K + ++ FL K +FVL LDD WE+V+L
Sbjct:   239 YKYQKGVYLYNFLRKMRFVLFLDDIWEKVNL 269

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 2.2e-33, Sum P(2) = 2.2e-33
 Identities = 52/93 (55%), Positives = 66/93 (70%)

Query:     1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNK 60
             MGGVGKTTLLT I+N    +    D VIW+VVS DLQ+ KIQE +G+K+G + G  W  K
Sbjct:   181 MGGVGKTTLLTQIHNTLHDTKNGVDIVIWVVVSSDLQIHKIQEDIGEKLGFI-GKEWNKK 239

Query:    61 NSEEKALEIFRFLSKKKFVLLLDDKWERVDLNK 93
                +KA++I   LSKK+FVLLLDD W++VDL K
Sbjct:   240 QESQKAVDILNCLSKKRFVLLLDDIWKKVDLTK 272

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	180
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	1e-38

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score =  133 bits (336), Expect = 1e-38
 Identities = 78/252 (30%), Positives = 108/252 (42%), Gaps = 78/252 (30%)

Query: 1   MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNK 60
           MGGVGKTTL   I N   V    FD V W+VVSK     ++Q+ + +++GL D   W  K
Sbjct: 27  MGGVGKTTLAKQIYNDDSVGGH-FDSVAWVVVSKTYTEFRLQKDILQELGL-DDSDWVEK 84

Query: 61  NSEEKALEIFRFLSKKKFVLLLDDKWERVDLNKGLF-------------------VCGLV 101
           N  E A++I   L +K+F+L+LDD WE+ D +K                      V G +
Sbjct: 85  NESELAVKIKEALLRKRFLLVLDDVWEKNDWDKIGVPFPDGENGSRVIVTTRSESVAGRM 144

Query: 102 -EANKNFKVECLSDNDAWELLRQK--------------LAQTVAKKCVGLPLALITIGRA 146
              +K  +VE L   ++WEL   K              +A+ + +KC GLPLAL  +G  
Sbjct: 145 GGTSKPHEVESLEPEESWELFSNKVFEKELPPCPELEEVAKEIVEKCKGLPLALKVLGGL 204

Query: 147 IACKRTPREW------------------------------------------SLYPEDYL 164
           +A K T +EW                                          +L+PEDY 
Sbjct: 205 LAFKSTVQEWEHVLEQLNNELAGRDGLNEVLSILSLSYDNLPMHLKRCFLYLALFPEDYN 264

Query: 165 ISKEILIYCWID 176
           I KE LI  WI 
Sbjct: 265 IRKEQLIKLWIA 276

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	180
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	99.25
PRK04841	903	transcriptional regulator MalT; Provisional	98.94
PRK00411	394	cdc6 cell division control protein 6; Reviewed	98.77
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.73
cd01128	249	rho_factor Transcription termination factor rho is	98.7
PF05729	166	NACHT: NACHT domain	98.62
PRK09376	416	rho transcription termination factor Rho; Provisio	98.59
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	98.47
COG3903	414	Predicted ATPase [General function prediction only	98.47
TIGR00767	415	rho transcription termination factor Rho. Members	98.43
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	98.4
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	98.3
PF14516	331	AAA_35: AAA-like domain	98.23
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	98.23
COG2256	436	MGS1 ATPase related to the helicase subunit of the	98.21
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	98.21
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	98.11
PRK13342	413	recombination factor protein RarA; Reviewed	97.93
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	97.91
PRK06893	229	DNA replication initiation factor; Validated	97.87
PRK12608	380	transcription termination factor Rho; Provisional	97.85
PRK14087	450	dnaA chromosomal replication initiation protein; P	97.84
PRK08727	233	hypothetical protein; Validated	97.81
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.79
smart00382	148	AAA ATPases associated with a variety of cellular	97.75
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.75
COG3267	269	ExeA Type II secretory pathway, component ExeA (pr	97.73
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	97.7
PF13173	128	AAA_14: AAA domain	97.69
KOG2028	554	consensus ATPase related to the helicase subunit o	97.68
PRK08118	167	topology modulation protein; Reviewed	97.67
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.67
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	97.62
PRK14088	440	dnaA chromosomal replication initiation protein; P	97.58
PRK07261	171	topology modulation protein; Provisional	97.57
PRK00149	450	dnaA chromosomal replication initiation protein; R	97.53
PTZ00202	550	tuzin; Provisional	97.53
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.51
PRK04195	482	replication factor C large subunit; Provisional	97.51
PRK08084	235	DNA replication initiation factor; Provisional	97.49
PF00004	132	AAA: ATPase family associated with various cellula	97.48
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	97.46
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	97.45
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.45
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	97.41
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	97.41
PRK08903	227	DnaA regulatory inactivator Hda; Validated	97.39
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	97.39
PRK08116	268	hypothetical protein; Validated	97.37
PRK12422	445	chromosomal replication initiation protein; Provis	97.36
PTZ00112	1164	origin recognition complex 1 protein; Provisional	97.35
PRK13341	725	recombination factor protein RarA/unknown domain f	97.35
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	97.35
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	97.33
PRK09112	351	DNA polymerase III subunit delta'; Validated	97.26
KOG2543	438	consensus Origin recognition complex, subunit 5 [R	97.26
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	97.26
PRK05564	313	DNA polymerase III subunit delta'; Validated	97.24
PLN03025	319	replication factor C subunit; Provisional	97.22
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	97.21
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	97.21
PRK05642	234	DNA replication initiation factor; Validated	97.2
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	97.19
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	97.18
PRK14086	617	dnaA chromosomal replication initiation protein; P	97.16
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	97.16
PRK07940	394	DNA polymerase III subunit delta'; Validated	97.15
PRK09087	226	hypothetical protein; Validated	97.12
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	97.11
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	97.08
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.08
PRK12377	248	putative replication protein; Provisional	97.07
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	97.02
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	97.01
cd01133	274	F1-ATPase_beta F1 ATP synthase beta subunit, nucle	97.0
PRK03992	389	proteasome-activating nucleotidase; Provisional	96.98
cd01394	218	radB RadB. The archaeal protein radB shares simila	96.95
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	96.93
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	96.91
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	96.88
COG3899	849	Predicted ATPase [General function prediction only	96.87
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	96.86
cd03115	173	SRP The signal recognition particle (SRP) mediates	96.85
PRK07952	244	DNA replication protein DnaC; Validated	96.85
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	96.84
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	96.83
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	96.8
COG1484	254	DnaC DNA replication protein [DNA replication, rec	96.77
PRK07471	365	DNA polymerase III subunit delta'; Validated	96.76
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	96.74
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	96.74
KOG2227	529	consensus Pre-initiation complex, subunit CDC6, AA	96.73
PRK05541	176	adenylylsulfate kinase; Provisional	96.69
COG1066	456	Sms Predicted ATP-dependent serine protease [Postt	96.67
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	96.65
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	96.65
PRK04296	190	thymidine kinase; Provisional	96.65
cd00983	325	recA RecA is a bacterial enzyme which has roles in	96.65
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	96.65
TIGR00959	428	ffh signal recognition particle protein. This mode	96.61
PRK09354	349	recA recombinase A; Provisional	96.59
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	96.58
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	96.53
PRK06526	254	transposase; Provisional	96.52
PRK08939	306	primosomal protein DnaI; Reviewed	96.5
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	96.5
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	96.5
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	96.49
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	96.48
CHL00176	638	ftsH cell division protein; Validated	96.47
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	96.46
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	96.45
PF08423	256	Rad51: Rad51; InterPro: IPR013632 This domain is f	96.45
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	96.45
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.41
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	96.38
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	96.37
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	96.37
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	96.35
PRK08181	269	transposase; Validated	96.35
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	96.34
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	96.34
PRK10867	433	signal recognition particle protein; Provisional	96.34
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	96.3
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.29
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	96.28
PRK06067	234	flagellar accessory protein FlaH; Validated	96.26
COG0468	279	RecA RecA/RadA recombinase [DNA replication, recom	96.25
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	96.25
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	96.24
PF00006	215	ATP-synt_ab: ATP synthase alpha/beta family, nucle	96.23
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	96.22
PRK04132	846	replication factor C small subunit; Provisional	96.22
PRK12402	337	replication factor C small subunit 2; Reviewed	96.2
TIGR02236	310	recomb_radA DNA repair and recombination protein R	96.2
PRK09183	259	transposase/IS protein; Provisional	96.19
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	96.14
PRK04301	317	radA DNA repair and recombination protein RadA; Va	96.14
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	96.14
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.13
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	96.12
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	96.11
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	96.09
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	96.09
PRK06921	266	hypothetical protein; Provisional	96.05
CHL00181	287	cbbX CbbX; Provisional	96.04
KOG1969	877	consensus DNA replication checkpoint protein CHL12	96.03
PRK12597	461	F0F1 ATP synthase subunit beta; Provisional	96.03
PRK04328	249	hypothetical protein; Provisional	96.02
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	95.95
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	95.95
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	95.94
PRK06620	214	hypothetical protein; Validated	95.94
PRK05707	328	DNA polymerase III subunit delta'; Validated	95.92
PRK14974	336	cell division protein FtsY; Provisional	95.92
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	95.91
cd01135	276	V_A-ATPase_B V/A-type ATP synthase (non-catalytic)	95.9
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	95.89
PRK08149	428	ATP synthase SpaL; Validated	95.88
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	95.88
PRK00440	319	rfc replication factor C small subunit; Reviewed	95.86
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	95.85
cd01132	274	F1_ATPase_alpha F1 ATP synthase alpha, central dom	95.83
PTZ00185	574	ATPase alpha subunit; Provisional	95.82
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	95.81
CHL00195	489	ycf46 Ycf46; Provisional	95.78
PRK08927	442	fliI flagellum-specific ATP synthase; Validated	95.77
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	95.77
PRK12678	672	transcription termination factor Rho; Provisional	95.75
TIGR01040	466	V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. Th	95.75
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	95.72
KOG0728	404	consensus 26S proteasome regulatory complex, ATPas	95.72
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	95.71
PRK06217	183	hypothetical protein; Validated	95.71
COG0593	408	DnaA ATPase involved in DNA replication initiation	95.7
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	95.69
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	95.68
TIGR03324	497	alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit a	95.66
PRK03839	180	putative kinase; Provisional	95.65
PRK05973	237	replicative DNA helicase; Provisional	95.65
PRK09280	463	F0F1 ATP synthase subunit beta; Validated	95.64
KOG0736	953	consensus Peroxisome assembly factor 2 containing	95.63
TIGR03305	449	alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit	95.63
PRK06936	439	type III secretion system ATPase; Provisional	95.62
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	95.61
PRK11823	446	DNA repair protein RadA; Provisional	95.6
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	95.58
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	95.57
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	95.57
TIGR00064	272	ftsY signal recognition particle-docking protein F	95.55
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	95.54
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	95.54
PTZ00035	337	Rad51 protein; Provisional	95.53
PRK07594	433	type III secretion system ATPase SsaN; Validated	95.51
TIGR01041	458	ATP_syn_B_arch ATP synthase archaeal, B subunit. A	95.5
PRK13849	231	putative crown gall tumor protein VirC1; Provision	95.5
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	95.49
KOG0729	435	consensus 26S proteasome regulatory complex, ATPas	95.48
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	95.48
PRK08533	230	flagellar accessory protein FlaH; Reviewed	95.46
PRK06835	329	DNA replication protein DnaC; Validated	95.46
PRK08233	182	hypothetical protein; Provisional	95.43
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	95.43
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	95.41
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	95.4
TIGR01039	461	atpD ATP synthase, F1 beta subunit. The sequences	95.38
PRK09519	790	recA DNA recombination protein RecA; Reviewed	95.33
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	95.31
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	95.3
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	95.29
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	95.29
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	95.29
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	95.26
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	95.26
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	95.24
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	95.21
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	95.19
TIGR00962	501	atpA proton translocating ATP synthase, F1 alpha s	95.18
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	95.18
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	95.17
PRK06762	166	hypothetical protein; Provisional	95.15
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	95.13
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	95.12
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	95.11
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	95.09
PRK00625	173	shikimate kinase; Provisional	95.09
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	95.08
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	95.08
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	95.07
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	95.07
PRK08769	319	DNA polymerase III subunit delta'; Validated	95.05
PTZ00088	229	adenylate kinase 1; Provisional	95.05
cd01134	369	V_A-ATPase_A V/A-type ATP synthase catalytic subun	95.05
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	95.03
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	95.0
PF00154	322	RecA: recA bacterial DNA recombination protein; In	95.0
PRK06871	325	DNA polymerase III subunit delta'; Validated	94.97
PRK14527	191	adenylate kinase; Provisional	94.97
CHL00059	485	atpA ATP synthase CF1 alpha subunit	94.96
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	94.96
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	94.95
PRK00279	215	adk adenylate kinase; Reviewed	94.92
PRK06090	319	DNA polymerase III subunit delta'; Validated	94.9
PRK05922	434	type III secretion system ATPase; Validated	94.89
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	94.89
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	94.87
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	94.87
PRK09099	441	type III secretion system ATPase; Provisional	94.87
COG1157	441	FliI Flagellar biosynthesis/type III secretory pat	94.86
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	94.85
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	94.84
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	94.82
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	94.81
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	94.8
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	94.76
COG1192	259	Soj ATPases involved in chromosome partitioning [C	94.74
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	94.73
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	94.7
PRK00131	175	aroK shikimate kinase; Reviewed	94.7
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	94.69
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	94.66
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	94.64
PHA02518	211	ParA-like protein; Provisional	94.63
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	94.63
PRK08058	329	DNA polymerase III subunit delta'; Validated	94.62
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	94.6
PRK13947	171	shikimate kinase; Provisional	94.6
PHA02544	316	44 clamp loader, small subunit; Provisional	94.6
PF02374	305	ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_	94.59
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	94.57
COG0003	322	ArsA Predicted ATPase involved in chromosome parti	94.56
PRK06820	440	type III secretion system ATPase; Validated	94.53
PRK04196	460	V-type ATP synthase subunit B; Provisional	94.52
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	94.5
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	94.5
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	94.5
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	94.48
PF07726	131	AAA_3: ATPase family associated with various cellu	94.48
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	94.48
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	94.45
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	94.42
PRK07399	314	DNA polymerase III subunit delta'; Validated	94.4
CHL00095	821	clpC Clp protease ATP binding subunit	94.39
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	94.35
KOG1514	767	consensus Origin recognition complex, subunit 1, a	94.34
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	94.33
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	94.32
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	94.3
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	94.29
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	94.29
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	94.24
CHL00095	821	clpC Clp protease ATP binding subunit	94.24
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	94.23
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	94.22
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	94.21
PRK09281	502	F0F1 ATP synthase subunit alpha; Validated	94.2
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	94.19
PHA00729	226	NTP-binding motif containing protein	94.18
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	94.18
PRK09302	509	circadian clock protein KaiC; Reviewed	94.18
PRK13343	502	F0F1 ATP synthase subunit alpha; Provisional	94.16
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	94.15
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	94.15
PTZ00301	210	uridine kinase; Provisional	94.15
PRK07993	334	DNA polymerase III subunit delta'; Validated	94.14
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	94.13
PRK06547	172	hypothetical protein; Provisional	94.12
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	94.12
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	94.09
PRK04040	188	adenylate kinase; Provisional	94.08
PRK14532	188	adenylate kinase; Provisional	94.07
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	94.07
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	94.06
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	94.05
PRK13949	169	shikimate kinase; Provisional	94.05
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	94.03
cd02040	270	NifH NifH gene encodes component II (iron protein)	94.03
PRK11545	163	gntK gluconate kinase 1; Provisional	94.02
PRK10865	857	protein disaggregation chaperone; Provisional	94.02
PRK13231	264	nitrogenase reductase-like protein; Reviewed	94.0
COG3598	402	RepA RecA-family ATPase [DNA replication, recombin	93.99
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	93.99
TIGR00235	207	udk uridine kinase. Model contains a number of lon	93.99
PRK05480	209	uridine/cytidine kinase; Provisional	93.97
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	93.96
PRK08699	325	DNA polymerase III subunit delta'; Validated	93.95
PRK06696	223	uridine kinase; Validated	93.94
PRK13975	196	thymidylate kinase; Provisional	93.87
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	93.87
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	93.84
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	93.84
CHL00060	494	atpB ATP synthase CF1 beta subunit	93.84
PRK02118	436	V-type ATP synthase subunit B; Provisional	93.82
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	93.76
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	93.72
PRK14530	215	adenylate kinase; Provisional	93.65
PRK09302	509	circadian clock protein KaiC; Reviewed	93.63
PRK00889	175	adenylylsulfate kinase; Provisional	93.62
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	93.62
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	93.61
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	93.57
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	93.53
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	93.52
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	93.51
cd03216	163	ABC_Carb_Monos_I This family represents the domain	93.48
PRK13946	184	shikimate kinase; Provisional	93.45
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	93.42
COG2842	297	Uncharacterized ATPase, putative transposase [Gene	93.42
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	93.41
PF13245	76	AAA_19: Part of AAA domain	93.4
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	93.39
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	93.38
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	93.37
PHA02530	300	pseT polynucleotide kinase; Provisional	93.37
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	93.37
PRK13886	241	conjugal transfer protein TraL; Provisional	93.33
cd02036	179	MinD Bacterial cell division requires the formatio	93.33
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	93.32
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	93.32
PRK04192	586	V-type ATP synthase subunit A; Provisional	93.29
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	93.29
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	93.28
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	93.26
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	93.23
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	93.23
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	93.21
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	93.18
PRK07667	193	uridine kinase; Provisional	93.17
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	93.16
PRK12339	197	2-phosphoglycerate kinase; Provisional	93.12
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	93.1
cd00046	144	DEXDc DEAD-like helicases superfamily. A diverse f	93.09
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	93.05
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	93.04
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	93.03
PRK03731	171	aroL shikimate kinase II; Reviewed	93.0
TIGR01281	268	DPOR_bchL light-independent protochlorophyllide re	92.97
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	92.95
COG1158	422	Rho Transcription termination factor [Transcriptio	92.93
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	92.93
PRK14529	223	adenylate kinase; Provisional	92.92
PRK06761	282	hypothetical protein; Provisional	92.92
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	92.87
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	92.87
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	92.85
PRK05057	172	aroK shikimate kinase I; Reviewed	92.85
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	92.83
PRK05748	448	replicative DNA helicase; Provisional	92.81
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	92.81
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	92.79
PRK10037	250	cell division protein; Provisional	92.79
PRK04182	180	cytidylate kinase; Provisional	92.79
PRK13230	279	nitrogenase reductase-like protein; Reviewed	92.76
PRK14531	183	adenylate kinase; Provisional	92.75
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	92.72
PRK13948	182	shikimate kinase; Provisional	92.72
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	92.72
PRK13765	637	ATP-dependent protease Lon; Provisional	92.71
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	92.71
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	92.69
PRK13233	275	nifH nitrogenase reductase; Reviewed	92.66
cd03110	179	Fer4_NifH_child This protein family's function is	92.66
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	92.65
TIGR01969	251	minD_arch cell division ATPase MinD, archaeal. Thi	92.65
PRK10865	857	protein disaggregation chaperone; Provisional	92.65
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	92.63
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	92.62
TIGR01287	275	nifH nitrogenase iron protein. This model describe	92.55
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	92.54
PF07088	484	GvpD: GvpD gas vesicle protein; InterPro: IPR00978	92.51
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	92.49
PRK15453	290	phosphoribulokinase; Provisional	92.47
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	92.46
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	92.45
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	92.45
PRK10416	318	signal recognition particle-docking protein FtsY;	92.42
PRK03846	198	adenylylsulfate kinase; Provisional	92.4
PF09848	352	DUF2075: Uncharacterized conserved protein (DUF207	92.39
PRK13235	274	nifH nitrogenase reductase; Reviewed	92.38
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	92.37
PRK07165	507	F0F1 ATP synthase subunit alpha; Validated	92.34
TIGR00708	173	cobA cob(I)alamin adenosyltransferase. Alternate n	92.27
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	92.25
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	92.25
PRK02496	184	adk adenylate kinase; Provisional	92.23
cd02032	267	Bchl_like This family of proteins contains bchL an	92.22
PRK13232	273	nifH nitrogenase reductase; Reviewed	92.17
PLN02200	234	adenylate kinase family protein	92.15
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	92.09
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	92.06
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	92.04
COG1373	398	Predicted ATPase (AAA+ superfamily) [General funct	92.03
PRK10646	153	ADP-binding protein; Provisional	92.03
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	91.97
PRK00300	205	gmk guanylate kinase; Provisional	91.96
PF05970	364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	91.96
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	91.92
KOG0726	440	consensus 26S proteasome regulatory complex, ATPas	91.92
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	91.91
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	91.88
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	91.82
TIGR01042	591	V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. Th	91.81
PF06564	243	YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p	91.73
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	91.69
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	91.67
COG1149	284	MinD superfamily P-loop ATPase containing an inser	91.66
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	91.66
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	91.65
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	91.6
cd02117	212	NifH_like This family contains the NifH (iron prot	91.6
cd03269	210	ABC_putative_ATPase This subfamily is involved in	91.55
TIGR03453	387	partition_RepA plasmid partitioning protein RepA.	91.53
PRK10875	615	recD exonuclease V subunit alpha; Provisional	91.48
PRK14528	186	adenylate kinase; Provisional	91.47
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	91.43
PRK09825	176	idnK D-gluconate kinase; Provisional	91.39
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	91.38
PRK09165	497	replicative DNA helicase; Provisional	91.38
TIGR01968	261	minD_bact septum site-determining protein MinD. Th	91.38
CHL00072	290	chlL photochlorophyllide reductase subunit L	91.33
COG0714	329	MoxR-like ATPases [General function prediction onl	91.32
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	91.32
PRK13973	213	thymidylate kinase; Provisional	91.31
PF03796	259	DnaB_C: DnaB-like helicase C terminal domain; Inte	91.29
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	91.28
PRK06851	367	hypothetical protein; Provisional	91.27
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	91.26
cd03111	106	CpaE_like This protein family consists of proteins	91.23
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	91.18
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	91.17
COG1100	219	GTPase SAR1 and related small G proteins [General	91.16
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	91.15
cd00550	254	ArsA_ATPase Oxyanion-translocating ATPase (ArsA).	91.13
COG1061	442	SSL2 DNA or RNA helicases of superfamily II [Trans	91.11
PRK13869	405	plasmid-partitioning protein RepA; Provisional	91.03
PRK14737	186	gmk guanylate kinase; Provisional	91.01
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	90.95
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	90.95
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	90.91
PRK06964	342	DNA polymerase III subunit delta'; Validated	90.9
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	90.83
CHL00175	281	minD septum-site determining protein; Validated	90.8
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	90.8
PRK13768	253	GTPase; Provisional	90.75
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	90.75
PRK10818	270	cell division inhibitor MinD; Provisional	90.73
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	90.72
PRK08356	195	hypothetical protein; Provisional	90.72
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	90.69
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	90.66
PRK13695	174	putative NTPase; Provisional	90.61
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	90.57
PRK05439	311	pantothenate kinase; Provisional	90.56
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	90.56
PRK06851	367	hypothetical protein; Provisional	90.53
COG0645	170	Predicted kinase [General function prediction only	90.49
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	90.47

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=6.1e-42  Score=293.67  Aligned_cols=179  Identities=49%  Similarity=0.888  Sum_probs=164.0

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL   80 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll   80 (180)
                      |||+||||||++++|+...++++||.++||++|++++...++.+|++.++.. .........++.+..+.+.|+++||+|
T Consensus       187 MGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~-~~~~~~~~~~~~~~~i~~~L~~krfll  265 (889)
T KOG4658|consen  187 MGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLL-DEEWEDKEEDELASKLLNLLEGKRFLL  265 (889)
T ss_pred             CCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccC-CcccchhhHHHHHHHHHHHhccCceEE
Confidence            8999999999999999745999999999999999999999999999999875 334444455899999999999999999


Q ss_pred             EEeCCCCcccccc-c------------------cccccc-ccccceEeecCCChhhhHHHHHHH--------------HH
Q 046006           81 LLDDKWERVDLNK-G------------------LFVCGL-VEANKNFKVECLSDNDAWELLRQK--------------LA  126 (180)
Q Consensus        81 VlDdv~~~~~l~~-g------------------~~~~~~-~~~~~~~~l~~L~~~~a~~Lf~~~--------------~~  126 (180)
                      ||||||+..+|+. |                  ..|+.. +++...++++.|+++|||+||.+.              .+
T Consensus       266 vLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~la  345 (889)
T KOG4658|consen  266 VLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELA  345 (889)
T ss_pred             EEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHH
Confidence            9999999988766 2                  667776 777889999999999999999999              79


Q ss_pred             HHHHHHcCCChHHHHHHHHHhcCCCCCCce--------------------------------------------eecCCC
Q 046006          127 QTVAKKCVGLPLALITIGRAIACKRTPREW--------------------------------------------SLYPED  162 (180)
Q Consensus       127 ~~i~~~c~g~PLal~~~~~~L~~~~~~~~w--------------------------------------------s~fp~~  162 (180)
                      ++++++|+|+|||+.++|+.|+.+.+..+|                                            |+||+|
T Consensus       346 k~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED  425 (889)
T KOG4658|consen  346 KEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPED  425 (889)
T ss_pred             HHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcc
Confidence            999999999999999999999999999999                                            999999


Q ss_pred             cccCHHHHHHHHHhcCCC
Q 046006          163 YLISKEILIYCWIDKFHI  180 (180)
Q Consensus       163 ~~i~~~~Li~~Wiaeg~i  180 (180)
                      |.|+.+.|+.+|||||||
T Consensus       426 ~~I~~e~Li~yWiaEGfi  443 (889)
T KOG4658|consen  426 YEIKKEKLIEYWIAEGFI  443 (889)
T ss_pred             cccchHHHHHHHHhccCc
Confidence            999999999999999997

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=100.00  E-value=2.8e-37  Score=237.92  Aligned_cols=178  Identities=37%  Similarity=0.630  Sum_probs=147.5

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CCcChHHHHHHHHHHhCCCcEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSW-KNKNSEEKALEIFRFLSKKKFV   79 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~l~~~L~~k~~L   79 (180)
                      |||+||||||++++++. .++++|++++|++++...+..+++..|+++++.. .... ...+.++....+++.|+++++|
T Consensus        27 ~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~L  104 (287)
T PF00931_consen   27 MGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEP-DSSISDPKDIEELQDQLRELLKDKRCL  104 (287)
T ss_dssp             STTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC--STSSCCSSHHHHHHHHHHHHCCTSEE
T ss_pred             CCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhccccce
Confidence            79999999999999985 4779999999999999999999999999999876 3333 5677888999999999999999


Q ss_pred             EEEeCCCCcccccc----------c---------ccccccccc-cceEeecCCChhhhHHHHHHH--------------H
Q 046006           80 LLLDDKWERVDLNK----------G---------LFVCGLVEA-NKNFKVECLSDNDAWELLRQK--------------L  125 (180)
Q Consensus        80 lVlDdv~~~~~l~~----------g---------~~~~~~~~~-~~~~~l~~L~~~~a~~Lf~~~--------------~  125 (180)
                      |||||||+...+..          |         ..++..... ...+++++|+++||++||.+.              .
T Consensus       105 lVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~  184 (287)
T PF00931_consen  105 LVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDL  184 (287)
T ss_dssp             EEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTH
T ss_pred             eeeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999887633          2         233333333 568999999999999999988              6


Q ss_pred             HHHHHHHcCCChHHHHHHHHHhcCCCCCCce-------------------------------------------eecCCC
Q 046006          126 AQTVAKKCVGLPLALITIGRAIACKRTPREW-------------------------------------------SLYPED  162 (180)
Q Consensus       126 ~~~i~~~c~g~PLal~~~~~~L~~~~~~~~w-------------------------------------------s~fp~~  162 (180)
                      +++|++.|+|+||||+++|++|+.+.+..+|                                           ++||++
T Consensus       185 ~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~  264 (287)
T PF00931_consen  185 AKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEG  264 (287)
T ss_dssp             HHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHHHHhhCcCCCCC
Confidence            8899999999999999999999766677888                                           999999


Q ss_pred             cccCHHHHHHHHHhcCCC
Q 046006          163 YLISKEILIYCWIDKFHI  180 (180)
Q Consensus       163 ~~i~~~~Li~~Wiaeg~i  180 (180)
                      +.|+.+.|+++|++||||
T Consensus       265 ~~i~~~~li~lW~~e~~i  282 (287)
T PF00931_consen  265 VPIPRERLIRLWVAEGFI  282 (287)
T ss_dssp             S-EEHHHHHHHHTT-HHT
T ss_pred             ceECHHHHHHHHHHCCCC
Confidence            999999999999999997

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PLN03210 Resistant to P

Probab=99.89  E-value=2.1e-22  Score=179.54  Aligned_cols=146  Identities=22%  Similarity=0.273  Sum_probs=107.1

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEe---CCC-----------CC-HHHHHHHHHHHhCCCCCCCCCCcChHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVV---SKD-----------LQ-LEKIQEIVGKKVGLLDGDSWKNKNSEEK   65 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~---~~~-----------~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~   65 (180)
                      |||+||||||+++|+++.   .+|++.+|+..   +..           .+ ...+...++..+... . ......    
T Consensus       215 ~gGiGKTTLA~~l~~~l~---~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~-~-~~~~~~----  285 (1153)
T PLN03210        215 SSGIGKTTIARALFSRLS---RQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDK-K-DIKIYH----  285 (1153)
T ss_pred             CCCCchHHHHHHHHHHHh---hcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCC-C-CcccCC----
Confidence            799999999999999854   78999888752   111           01 123444555554222 1 111111    


Q ss_pred             HHHHHHHhCCCcEEEEEeCCCCcccccc----------c---------ccccccccccceEeecCCChhhhHHHHHHH--
Q 046006           66 ALEIFRFLSKKKFVLLLDDKWERVDLNK----------G---------LFVCGLVEANKNFKVECLSDNDAWELLRQK--  124 (180)
Q Consensus        66 ~~~l~~~L~~k~~LlVlDdv~~~~~l~~----------g---------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~--  124 (180)
                      ...+++.|+++|+||||||||+..+++.          |         ..++..++...+|+++.|+.++|++||+++  
T Consensus       286 ~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af  365 (1153)
T PLN03210        286 LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAF  365 (1153)
T ss_pred             HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhc
Confidence            2457788999999999999998766543          2         233334455679999999999999999987  


Q ss_pred             -----------HHHHHHHHcCCChHHHHHHHHHhcCCCCCCce
Q 046006          125 -----------LAQTVAKKCVGLPLALITIGRAIACKRTPREW  156 (180)
Q Consensus       125 -----------~~~~i~~~c~g~PLal~~~~~~L~~~~~~~~w  156 (180)
                                 .+++|+++|+|+|||++++|++|++ ++..+|
T Consensus       366 ~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W  407 (1153)
T PLN03210        366 KKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDW  407 (1153)
T ss_pred             CCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHH
Confidence                       6889999999999999999999998 467888

syringae 6; Provisional

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=99.25  E-value=4.1e-10  Score=86.06  Aligned_cols=139  Identities=17%  Similarity=0.266  Sum_probs=90.9

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh-----CC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL-----SK   75 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L-----~~   75 (180)
                      ++|+|||||++.+++.+. . ..+ ..+|+ .....+..+++..|+..++.+ ..   ..+.......+.+.+     .+
T Consensus        51 ~~G~GKTtl~~~l~~~l~-~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~-~~---~~~~~~~~~~l~~~l~~~~~~~  122 (269)
T TIGR03015        51 EVGAGKTTLIRNLLKRLD-Q-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLE-TE---GRDKAALLRELEDFLIEQFAAG  122 (269)
T ss_pred             CCCCCHHHHHHHHHHhcC-C-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCC-CC---CCCHHHHHHHHHHHHHHHHhCC
Confidence            479999999999998853 1 111 12233 333457778999999998765 21   222233333333322     67


Q ss_pred             CcEEEEEeCCCCccc--ccc--------------------c-ccc----cc-c---c--cccceEeecCCChhhhHHHHH
Q 046006           76 KKFVLLLDDKWERVD--LNK--------------------G-LFV----CG-L---V--EANKNFKVECLSDNDAWELLR  122 (180)
Q Consensus        76 k~~LlVlDdv~~~~~--l~~--------------------g-~~~----~~-~---~--~~~~~~~l~~L~~~~a~~Lf~  122 (180)
                      ++.++|+||++....  ++.                    | ...    .. .   .  .....+.+++++.+|..+++.
T Consensus       123 ~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~  202 (269)
T TIGR03015       123 KRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIE  202 (269)
T ss_pred             CCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHH
Confidence            889999999987531  110                    1 000    00 0   0  012356899999999999887


Q ss_pred             HH---------------HHHHHHHHcCCChHHHHHHHHHh
Q 046006          123 QK---------------LAQTVAKKCVGLPLALITIGRAI  147 (180)
Q Consensus       123 ~~---------------~~~~i~~~c~g~PLal~~~~~~L  147 (180)
                      ..               ..+.|++.|+|.|..+..++..+
T Consensus       203 ~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~  242 (269)
T TIGR03015       203 HRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL  242 (269)
T ss_pred             HHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence            54               78899999999999999888877

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.94  E-value=1.8e-08  Score=88.93  Aligned_cols=142  Identities=15%  Similarity=0.178  Sum_probs=91.9

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCC----------CCCCcChHHHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDGD----------SWKNKNSEEKALEI   69 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~----------~~~~~~~~~~~~~l   69 (180)
                      ++|.||||++.+..++.    .   .+.|+++.. +.+...+...++..+......          .....+.......+
T Consensus        40 paG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (903)
T PRK04841         40 PAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQL  112 (903)
T ss_pred             CCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHH
Confidence            58999999999988652    2   589999865 446677777777777421010          00112233344444


Q ss_pred             HHHhC--CCcEEEEEeCCCCccccc------c-------c-cc-cccccc----------ccceEeec----CCChhhhH
Q 046006           70 FRFLS--KKKFVLLLDDKWERVDLN------K-------G-LF-VCGLVE----------ANKNFKVE----CLSDNDAW  118 (180)
Q Consensus        70 ~~~L~--~k~~LlVlDdv~~~~~l~------~-------g-~~-~~~~~~----------~~~~~~l~----~L~~~~a~  118 (180)
                      ...+.  +.+++|||||+....+-.      .       + .- ++++..          .....++.    +|+.+|+.
T Consensus       113 ~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~  192 (903)
T PRK04841        113 FIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQ  192 (903)
T ss_pred             HHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHH
Confidence            44443  679999999997753211      1       1 00 111110          11234455    89999999


Q ss_pred             HHHHHH--------HHHHHHHHcCCChHHHHHHHHHhcC
Q 046006          119 ELLRQK--------LAQTVAKKCVGLPLALITIGRAIAC  149 (180)
Q Consensus       119 ~Lf~~~--------~~~~i~~~c~g~PLal~~~~~~L~~  149 (180)
                      ++|...        ...+|.+.|+|.|+++..++..+..
T Consensus       193 ~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~  231 (903)
T PRK04841        193 QFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQ  231 (903)
T ss_pred             HHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence            999865        7789999999999999999877754

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=98.77  E-value=2.8e-07  Score=74.21  Aligned_cols=142  Identities=15%  Similarity=0.143  Sum_probs=91.3

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC--CCcE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS--KKKF   78 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~--~k~~   78 (180)
                      ++|+|||++++.+++++. .....-..++++.....+...++..|++++... .......+.++....+.+.+.  +++.
T Consensus        63 ~~GtGKT~l~~~v~~~l~-~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~  140 (394)
T PRK00411         63 PPGTGKTTTVKKVFEELE-EIAVKVVYVYINCQIDRTRYAIFSEIARQLFGH-PPPSSGLSFDELFDKIAEYLDERDRVL  140 (394)
T ss_pred             CCCCCHHHHHHHHHHHHH-HhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCC-CCCCCCCCHHHHHHHHHHHHHhcCCEE
Confidence            489999999999999863 222123456677666678889999999998652 112233456777778888775  4578


Q ss_pred             EEEEeCCCCccc------ccc---------c-------------------ccccccccccceEeecCCChhhhHHHHHHH
Q 046006           79 VLLLDDKWERVD------LNK---------G-------------------LFVCGLVEANKNFKVECLSDNDAWELLRQK  124 (180)
Q Consensus        79 LlVlDdv~~~~~------l~~---------g-------------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~  124 (180)
                      +||||+++....      +..         +                   ..+.+... ...+.+++++.++..+++..+
T Consensus       141 viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~-~~~i~f~py~~~e~~~il~~r  219 (394)
T PRK00411        141 IVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFR-PEEIYFPPYTADEIFDILKDR  219 (394)
T ss_pred             EEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCC-cceeecCCCCHHHHHHHHHHH
Confidence            999999987430      100         0                   00111111 135789999999999988876


Q ss_pred             -------------HHHHHHHHc----CCChHHHHHHHH
Q 046006          125 -------------LAQTVAKKC----VGLPLALITIGR  145 (180)
Q Consensus       125 -------------~~~~i~~~c----~g~PLal~~~~~  145 (180)
                                   ..+.+++.+    |..+.|+.++-.
T Consensus       220 ~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~  257 (394)
T PRK00411        220 VEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRR  257 (394)
T ss_pred             HHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence                         334444444    556777766543

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.73  E-value=2e-08  Score=68.35  Aligned_cols=85  Identities=18%  Similarity=0.260  Sum_probs=62.8

Q ss_pred             CCCCcHHHHHHHHHccccccc--CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCc-
Q 046006            1 MGGVGKTTLLTHINNKFLVSS--TDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKK-   77 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~-   77 (180)
                      .+|+|||++++++++++....  ..-..++|++.....+...+...|++.++.. .  ....+..++.+.+.+.+...+ 
T Consensus        12 ~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~-~--~~~~~~~~l~~~~~~~l~~~~~   88 (131)
T PF13401_consen   12 PPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLP-L--KSRQTSDELRSLLIDALDRRRV   88 (131)
T ss_dssp             -TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-S-S--SSTS-HHHHHHHHHHHHHHCTE
T ss_pred             CCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcc-c--cccCCHHHHHHHHHHHHHhcCC
Confidence            379999999999998853110  0134567999888779999999999999876 2  224567788888888887554 


Q ss_pred             EEEEEeCCCCc
Q 046006           78 FVLLLDDKWER   88 (180)
Q Consensus        78 ~LlVlDdv~~~   88 (180)
                      .+||+||++..
T Consensus        89 ~~lviDe~~~l   99 (131)
T PF13401_consen   89 VLLVIDEADHL   99 (131)
T ss_dssp             EEEEEETTHHH
T ss_pred             eEEEEeChHhc
Confidence            59999998765

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.70  E-value=6.5e-08  Score=73.18  Aligned_cols=85  Identities=21%  Similarity=0.143  Sum_probs=55.4

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC--CCHHHHHHHHHHHhCCCCCCCCCCc----ChHHHHHHHHHH-h
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD--LQLEKIQEIVGKKVGLLDGDSWKNK----NSEEKALEIFRF-L   73 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~----~~~~~~~~l~~~-L   73 (180)
                      .+|+|||||++.++++..  ..+|+.++|+.+..+  .+..++++.+...+-.. ..+.+..    -........... -
T Consensus        24 ~~G~GKTTLlr~I~n~l~--~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~-~~~~~~~~~~~~~~~~~~~a~~~~~  100 (249)
T cd01128          24 PPKAGKTTLLQSIANAIT--KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIAS-TFDEPPERHVQVAEMVLEKAKRLVE  100 (249)
T ss_pred             CCCCCHHHHHHHHHhccc--cccCCeEEEEEEccCCCccHHHHHHHhccEEEEe-cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            479999999999999953  248999999997665  78999999984333221 0011111    111222222222 2


Q ss_pred             CCCcEEEEEeCCCCc
Q 046006           74 SKKKFVLLLDDKWER   88 (180)
Q Consensus        74 ~~k~~LlVlDdv~~~   88 (180)
                      .+++.++++|++...
T Consensus       101 ~G~~vll~iDei~r~  115 (249)
T cd01128         101 HGKDVVILLDSITRL  115 (249)
T ss_pred             CCCCEEEEEECHHHh
Confidence            488999999998764

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PF05729 NACHT: NACHT domain

Probab=98.62  E-value=3.4e-07  Score=64.49  Aligned_cols=114  Identities=18%  Similarity=0.239  Sum_probs=67.3

Q ss_pred             CCCCcHHHHHHHHHcccccccCC----CCeEEEEEeCCCCCHH---HHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTD----FDCVIWIVVSKDLQLE---KIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL   73 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L   73 (180)
                      .+|+||||+++.+++++.. ...    +...+|++........   .+...|..+....      ......   .+...+
T Consensus         8 ~~G~GKStll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~------~~~~~~---~~~~~~   77 (166)
T PF05729_consen    8 EPGSGKSTLLRKLAQQLAE-EEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES------IAPIEE---LLQELL   77 (166)
T ss_pred             CCCCChHHHHHHHHHHHHh-cCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc------hhhhHH---HHHHHH
Confidence            3799999999999988642 222    3466777765533322   3444444444221      111111   222222


Q ss_pred             -CCCcEEEEEeCCCCcccccc---------------------c------------ccccccccccceEeecCCChhhhHH
Q 046006           74 -SKKKFVLLLDDKWERVDLNK---------------------G------------LFVCGLVEANKNFKVECLSDNDAWE  119 (180)
Q Consensus        74 -~~k~~LlVlDdv~~~~~l~~---------------------g------------~~~~~~~~~~~~~~l~~L~~~~a~~  119 (180)
                       ..+++++|+|++++...-..                     +            ............+++++|++++..+
T Consensus        78 ~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  157 (166)
T PF05729_consen   78 EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQ  157 (166)
T ss_pred             HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHH
Confidence             57899999999987643110                     1            1122222333578999999999999


Q ss_pred             HHHHH
Q 046006          120 LLRQK  124 (180)
Q Consensus       120 Lf~~~  124 (180)
                      ++.++
T Consensus       158 ~~~~~  162 (166)
T PF05729_consen  158 YLRKY  162 (166)
T ss_pred             HHHHH
Confidence            98764

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=98.59  E-value=1e-07  Score=75.80  Aligned_cols=82  Identities=21%  Similarity=0.212  Sum_probs=54.8

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC--CHHHHHHHHHHHhCCCCCCCCCCcChHHHH------HHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL--QLEKIQEIVGKKVGLLDGDSWKNKNSEEKA------LEIFRF   72 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~------~~l~~~   72 (180)
                      +||+||||||+.++++..  .++|+.++|+.++...  ...++++.|...+-.+    ....+.....      -...+.
T Consensus       177 ppGvGKTTLaK~Ian~I~--~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~s----t~d~~~~~~~~~a~~~ie~Ae~  250 (416)
T PRK09376        177 PPKAGKTVLLQNIANSIT--TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAS----TFDEPAERHVQVAEMVIEKAKR  250 (416)
T ss_pred             CCCCChhHHHHHHHHHHH--hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEE----CCCCCHHHHHHHHHHHHHHHHH
Confidence            489999999999999953  3489999999988877  7778888886322111    1112222111      111122


Q ss_pred             --hCCCcEEEEEeCCCCc
Q 046006           73 --LSKKKFVLLLDDKWER   88 (180)
Q Consensus        73 --L~~k~~LlVlDdv~~~   88 (180)
                        -.++.++|++|++...
T Consensus       251 ~~e~G~dVlL~iDsItR~  268 (416)
T PRK09376        251 LVEHGKDVVILLDSITRL  268 (416)
T ss_pred             HHHcCCCEEEEEEChHHH
Confidence              2579999999998754

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=98.47  E-value=1.5e-06  Score=64.53  Aligned_cols=38  Identities=21%  Similarity=0.240  Sum_probs=27.8

Q ss_pred             ceEeecCCChhhhHHHHHHH------------HHHHHHHHcCCChHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK------------LAQTVAKKCVGLPLALIT  142 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~------------~~~~i~~~c~g~PLal~~  142 (180)
                      ..+.+++|+.+++.+++...            ..++|...+||+|..|..
T Consensus       184 ~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~  233 (234)
T PF01637_consen  184 SHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE  233 (234)
T ss_dssp             -EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred             ceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence            45899999999999999982            678999999999998764

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>COG3903 Predicted ATPase [General function prediction only]

Probab=98.47  E-value=2.4e-07  Score=73.46  Aligned_cols=139  Identities=21%  Similarity=0.268  Sum_probs=98.7

Q ss_pred             CCCCcHHHHHHHHHcccccccCCC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDF-DCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV   79 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L   79 (180)
                      .|||||||++-++.+ ..   .-| +++.++....-.+...+.-.+...++..      ..+.+.....+.....++|.+
T Consensus        22 ~ggvgkttl~~~~a~-~~---~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~------~~~g~~~~~~~~~~~~~rr~l   91 (414)
T COG3903          22 AGGVGKTTLALQAAH-AA---SEYADGVAFVDLAPITDPALVFPTLAGALGLH------VQPGDSAVDTLVRRIGDRRAL   91 (414)
T ss_pred             cCccceehhhhhhHh-Hh---hhcccceeeeeccccCchhHhHHHHHhhcccc------cccchHHHHHHHHHHhhhhHH
Confidence            489999999999988 32   556 4555565555556666666666667664      223344555677788899999


Q ss_pred             EEEeCCCCcccccc--------c---------ccccccccccceEeecCCChh-hhHHHHHHH----------------H
Q 046006           80 LLLDDKWERVDLNK--------G---------LFVCGLVEANKNFKVECLSDN-DAWELLRQK----------------L  125 (180)
Q Consensus        80 lVlDdv~~~~~l~~--------g---------~~~~~~~~~~~~~~l~~L~~~-~a~~Lf~~~----------------~  125 (180)
                      +|+||..+..+--.        +         ..-......+..+.+++|+.. ++.++|...                .
T Consensus        92 lvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~  171 (414)
T COG3903          92 LVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNAAA  171 (414)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccceeecCCchHH
Confidence            99999876532111        1         222222334467788888875 788998877                7


Q ss_pred             HHHHHHHcCCChHHHHHHHHHhcC
Q 046006          126 AQTVAKKCVGLPLALITIGRAIAC  149 (180)
Q Consensus       126 ~~~i~~~c~g~PLal~~~~~~L~~  149 (180)
                      ..+|+++..|.|++|..+++..+.
T Consensus       172 v~~icr~ldg~~laielaaarv~s  195 (414)
T COG3903         172 VAEICRRLDGIPLAIELAAARVRS  195 (414)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHh
Confidence            899999999999999999988865

>TIGR00767 rho transcription termination factor Rho

Probab=98.43  E-value=1.1e-06  Score=70.23  Aligned_cols=85  Identities=20%  Similarity=0.151  Sum_probs=56.0

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC--CCHHHHHHHHHHHhCCCCCCCCCCcChHHHH----HHHHHH-h
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD--LQLEKIQEIVGKKVGLLDGDSWKNKNSEEKA----LEIFRF-L   73 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~----~~l~~~-L   73 (180)
                      .+|+|||||++.+++.+.  .++|+..+|+.+...  .+..++++.+...+-.. .-+.+....-...    ...... -
T Consensus       176 ~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvas-t~d~p~~~~~~va~~v~e~Ae~~~~  252 (415)
T TIGR00767       176 PPKAGKTVLLQKIAQAIT--RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVAS-TFDEPASRHVQVAEMVIEKAKRLVE  252 (415)
T ss_pred             CCCCChhHHHHHHHHhhc--ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEe-cCCCChHHHHHHHHHHHHHHHHHHH
Confidence            479999999999999863  348999999998755  68999999996544222 1111111111111    112222 2


Q ss_pred             CCCcEEEEEeCCCCc
Q 046006           74 SKKKFVLLLDDKWER   88 (180)
Q Consensus        74 ~~k~~LlVlDdv~~~   88 (180)
                      .+++.+|++|++...
T Consensus       253 ~GkdVVLlIDEitR~  267 (415)
T TIGR00767       253 HKKDVVILLDSITRL  267 (415)
T ss_pred             cCCCeEEEEEChhHH
Confidence            589999999999764

Members of this family differ in the specificity of RNA binding.

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=98.40  E-value=2e-06  Score=68.55  Aligned_cols=121  Identities=12%  Similarity=0.110  Sum_probs=77.5

Q ss_pred             CCCCcHHHHHHHHHcccccccCCC---CeEEEEEeCCCCCHHHHHHHHHHHhC---CCCCCCCCCcChHHHHHHHHHHhC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDF---DCVIWIVVSKDLQLEKIQEIVGKKVG---LLDGDSWKNKNSEEKALEIFRFLS   74 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f---~~~~wv~~~~~~~~~~~~~~i~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~   74 (180)
                      ++|+|||++++.+++++.......   -..+|++.....+...++..|++++.   ..  ......+..+....+.+.+.
T Consensus        48 ~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~l~~~l~  125 (365)
T TIGR02928        48 KTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEE--VPTTGLSTSEVFRRLYKELN  125 (365)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCC--CCCCCCCHHHHHHHHHHHHH
Confidence            589999999999998753211111   13567777776778889999999983   22  11122345556666666663


Q ss_pred             --CCcEEEEEeCCCCcc----c-------c---cc--c---------c----------cccccccccceEeecCCChhhh
Q 046006           75 --KKKFVLLLDDKWERV----D-------L---NK--G---------L----------FVCGLVEANKNFKVECLSDNDA  117 (180)
Q Consensus        75 --~k~~LlVlDdv~~~~----~-------l---~~--g---------~----------~~~~~~~~~~~~~l~~L~~~~a  117 (180)
                        +++.+||||+++...    .       +   ..  +         .          .+.+... ...+.+++++.++-
T Consensus       126 ~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~-~~~i~f~p~~~~e~  204 (365)
T TIGR02928       126 ERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLC-EEEIIFPPYDAEEL  204 (365)
T ss_pred             hcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCC-cceeeeCCCCHHHH
Confidence              568899999998762    0       1   00  0         0          0111111 14578999999999


Q ss_pred             HHHHHHH
Q 046006          118 WELLRQK  124 (180)
Q Consensus       118 ~~Lf~~~  124 (180)
                      .+++..+
T Consensus       205 ~~il~~r  211 (365)
T TIGR02928       205 RDILENR  211 (365)
T ss_pred             HHHHHHH
Confidence            9998876

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=98.30  E-value=1.6e-05  Score=61.91  Aligned_cols=136  Identities=13%  Similarity=0.075  Sum_probs=79.8

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---CCCCCcChHHHHHHHHHHhCCCc
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDG---DSWKNKNSEEKALEIFRFLSKKK   77 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~~~~l~~~L~~k~   77 (180)
                      ++|+|||+||+.+++...   ..+   ..+..+...... .+...+..++....   ++....+ ......+...+.+.+
T Consensus        38 p~G~GKT~la~~ia~~~~---~~~---~~~~~~~~~~~~-~l~~~l~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~  109 (305)
T TIGR00635        38 PPGLGKTTLAHIIANEMG---VNL---KITSGPALEKPG-DLAAILTNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFR  109 (305)
T ss_pred             CCCCCHHHHHHHHHHHhC---CCE---EEeccchhcCch-hHHHHHHhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhh
Confidence            589999999999999852   111   122211111222 22333344432200   0001111 223455777777888


Q ss_pred             EEEEEeCCCCcccccc--------c---------ccccccccccceEeecCCChhhhHHHHHHH-----------HHHHH
Q 046006           78 FVLLLDDKWERVDLNK--------G---------LFVCGLVEANKNFKVECLSDNDAWELLRQK-----------LAQTV  129 (180)
Q Consensus        78 ~LlVlDdv~~~~~l~~--------g---------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~-----------~~~~i  129 (180)
                      ..+|+|+..+...+..        |         ..+.+++  ...+.+++++.++..+++.+.           ....|
T Consensus       110 ~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~--~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~i  187 (305)
T TIGR00635       110 LDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRF--GIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEI  187 (305)
T ss_pred             eeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhc--ceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence            8889998766544332        1         0111112  246789999999999999877           67899


Q ss_pred             HHHcCCChHHHHHHHHH
Q 046006          130 AKKCVGLPLALITIGRA  146 (180)
Q Consensus       130 ~~~c~g~PLal~~~~~~  146 (180)
                      ++.|+|.|-.+..+...
T Consensus       188 a~~~~G~pR~~~~ll~~  204 (305)
T TIGR00635       188 ARRSRGTPRIANRLLRR  204 (305)
T ss_pred             HHHhCCCcchHHHHHHH
Confidence            99999999766555544

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PF14516 AAA_35: AAA-like domain

Probab=98.23  E-value=5.5e-05  Score=59.80  Aligned_cols=143  Identities=15%  Similarity=0.174  Sum_probs=92.0

Q ss_pred             CCcHHHHHHHHHcccccccCCCCeEEEEEeCC-----CCCHHHHH----HHHHHHhCCCCCCC-----CCCcChHHHHHH
Q 046006            3 GVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-----DLQLEKIQ----EIVGKKVGLLDGDS-----WKNKNSEEKALE   68 (180)
Q Consensus         3 GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~----~~i~~~l~~~~~~~-----~~~~~~~~~~~~   68 (180)
                      .+|||+|...+.+...  +..+ ..+++++..     ..+...++    ..|.++++.+ ..-     ....+.......
T Consensus        41 q~GKTSll~~l~~~l~--~~~~-~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~-~~l~~~w~~~~~~~~~~~~~  116 (331)
T PF14516_consen   41 QMGKTSLLLRLLERLQ--QQGY-RCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLD-EKLDEYWDEEIGSKISCTEY  116 (331)
T ss_pred             cCCHHHHHHHHHHHHH--HCCC-EEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCC-hhHHHHHHHhcCChhhHHHH
Confidence            5899999999988853  2344 345676543     12455444    4445555543 100     011233344445


Q ss_pred             HHHHh---CCCcEEEEEeCCCCcccccc------c-------------------------------ccc-cccccccceE
Q 046006           69 IFRFL---SKKKFVLLLDDKWERVDLNK------G-------------------------------LFV-CGLVEANKNF  107 (180)
Q Consensus        69 l~~~L---~~k~~LlVlDdv~~~~~l~~------g-------------------------------~~~-~~~~~~~~~~  107 (180)
                      +.+.+   .+++.+|+||+++.......      +                               .+. .+-......+
T Consensus       117 ~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i  196 (331)
T PF14516_consen  117 FEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPI  196 (331)
T ss_pred             HHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccce
Confidence            55543   26899999999987633111      1                               000 0011122568


Q ss_pred             eecCCChhhhHHHHHHH-------HHHHHHHHcCCChHHHHHHHHHhcC
Q 046006          108 KVECLSDNDAWELLRQK-------LAQTVAKKCVGLPLALITIGRAIAC  149 (180)
Q Consensus       108 ~l~~L~~~~a~~Lf~~~-------~~~~i~~~c~g~PLal~~~~~~L~~  149 (180)
                      +|++++.+|..+|+.++       ..++|...++|+|.-+..++..+..
T Consensus       197 ~L~~Ft~~ev~~L~~~~~~~~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~  245 (331)
T PF14516_consen  197 ELPDFTPEEVQELAQRYGLEFSQEQLEQLMDWTGGHPYLVQKACYLLVE  245 (331)
T ss_pred             eCCCCCHHHHHHHHHhhhccCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            89999999999999988       7899999999999999999999965

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=98.23  E-value=3e-05  Score=61.13  Aligned_cols=136  Identities=13%  Similarity=0.081  Sum_probs=79.9

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---CCCCCcChHHHHHHHHHHhCCCc
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDG---DSWKNKNSEEKALEIFRFLSKKK   77 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~~~~l~~~L~~k~   77 (180)
                      ++|+|||+||+.+++...   ..+   ..++.+ .......+..++..+.....   ++....+ ....+.+...+.+.+
T Consensus        59 ppG~GKT~la~~ia~~l~---~~~---~~~~~~-~~~~~~~l~~~l~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~  130 (328)
T PRK00080         59 PPGLGKTTLANIIANEMG---VNI---RITSGP-ALEKPGDLAAILTNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFR  130 (328)
T ss_pred             CCCccHHHHHHHHHHHhC---CCe---EEEecc-cccChHHHHHHHHhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcc
Confidence            589999999999999853   111   122221 11222233444454432200   0001111 123344666777788


Q ss_pred             EEEEEeCCCCcccccc--------c---------ccccccccccceEeecCCChhhhHHHHHHH-----------HHHHH
Q 046006           78 FVLLLDDKWERVDLNK--------G---------LFVCGLVEANKNFKVECLSDNDAWELLRQK-----------LAQTV  129 (180)
Q Consensus        78 ~LlVlDdv~~~~~l~~--------g---------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~-----------~~~~i  129 (180)
                      ..+++|+..+...+..        |         ..+.+++  ...+++++++.++..+++.+.           ....|
T Consensus       131 ~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf--~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~i  208 (328)
T PRK00080        131 LDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRF--GIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEI  208 (328)
T ss_pred             eeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhc--CeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHH
Confidence            8888888665543321        1         1111111  246889999999999999977           68899


Q ss_pred             HHHcCCChHHHHHHHHH
Q 046006          130 AKKCVGLPLALITIGRA  146 (180)
Q Consensus       130 ~~~c~g~PLal~~~~~~  146 (180)
                      ++.|+|.|-.+..+...
T Consensus       209 a~~~~G~pR~a~~~l~~  225 (328)
T PRK00080        209 ARRSRGTPRIANRLLRR  225 (328)
T ss_pred             HHHcCCCchHHHHHHHH
Confidence            99999999766555543

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=98.21  E-value=1.5e-05  Score=63.29  Aligned_cols=96  Identities=25%  Similarity=0.241  Sum_probs=57.2

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHH-HhCCCcEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFR-FLSKKKFV   79 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~-~L~~k~~L   79 (180)
                      +||+||||||+.+.....   ..|     ..+|-..+-                    ..+..+..+.-++ ...+++.+
T Consensus        56 PPG~GKTTlA~liA~~~~---~~f-----~~~sAv~~g--------------------vkdlr~i~e~a~~~~~~gr~ti  107 (436)
T COG2256          56 PPGTGKTTLARLIAGTTN---AAF-----EALSAVTSG--------------------VKDLREIIEEARKNRLLGRRTI  107 (436)
T ss_pred             CCCCCHHHHHHHHHHhhC---Cce-----EEecccccc--------------------HHHHHHHHHHHHHHHhcCCceE
Confidence            589999999999988742   333     222221111                    1222223333322 23488999


Q ss_pred             EEEeCCCCcccc---------ccc--------------ccccccccccceEeecCCChhhhHHHHHHH
Q 046006           80 LLLDDKWERVDL---------NKG--------------LFVCGLVEANKNFKVECLSDNDAWELLRQK  124 (180)
Q Consensus        80 lVlDdv~~~~~l---------~~g--------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~  124 (180)
                      |.+|+|..-+.-         +.|              .-.....+-..++.+++|+.+|-.+++.+-
T Consensus       108 LflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra  175 (436)
T COG2256         108 LFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRA  175 (436)
T ss_pred             EEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHH
Confidence            999999865422         223              001111123368999999999999998883

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=98.21  E-value=2.9e-05  Score=66.81  Aligned_cols=145  Identities=19%  Similarity=0.216  Sum_probs=97.2

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCC-----------CCCCcChHHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD-LQLEKIQEIVGKKVGLLDGD-----------SWKNKNSEEKALE   68 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~-----------~~~~~~~~~~~~~   68 (180)
                      +.|.|||||+.+.+...    ..-..+.|++++++ .++..++..++..++.. .+           .....+.......
T Consensus        45 PAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~al~~~-~p~~~~~a~~l~q~~~~~~l~~l~~~  119 (894)
T COG2909          45 PAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAALQQA-TPTLGDEAQTLLQKHQYVSLESLLSS  119 (894)
T ss_pred             CCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHHHHHh-CccccHHHHHHHHhcccccHHHHHHH
Confidence            57999999999998642    33356899998765 57888888888888632 11           1123345555666


Q ss_pred             HHHHhC--CCcEEEEEeCCCCccc--ccc-----------c--ccccccc----c------ccceEeec----CCChhhh
Q 046006           69 IFRFLS--KKKFVLLLDDKWERVD--LNK-----------G--LFVCGLV----E------ANKNFKVE----CLSDNDA  117 (180)
Q Consensus        69 l~~~L~--~k~~LlVlDdv~~~~~--l~~-----------g--~~~~~~~----~------~~~~~~l~----~L~~~~a  117 (180)
                      +..-+.  .++.++||||.--..+  +..           +  -.+.++.    +      .....++.    .++.+|+
T Consensus       120 L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~  199 (894)
T COG2909         120 LLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEA  199 (894)
T ss_pred             HHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHH
Confidence            666554  5689999999754432  111           1  1111111    1      11122222    5899999


Q ss_pred             HHHHHHH--------HHHHHHHHcCCChHHHHHHHHHhcCC
Q 046006          118 WELLRQK--------LAQTVAKKCVGLPLALITIGRAIACK  150 (180)
Q Consensus       118 ~~Lf~~~--------~~~~i~~~c~g~PLal~~~~~~L~~~  150 (180)
                      .++|...        ..+.+.+..+|.+-|+..++=.++.+
T Consensus       200 ~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~  240 (894)
T COG2909         200 AAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALALRNN  240 (894)
T ss_pred             HHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHccCC
Confidence            9999988        78999999999999999999888743

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=2.2e-05  Score=62.76  Aligned_cols=119  Identities=18%  Similarity=0.255  Sum_probs=86.4

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC--CCcE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS--KKKF   78 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~--~k~~   78 (180)
                      .+|+|||+.++.++..+.......+ .++|+.-...+..+++..|+++++..   .....+..+....+.+.+.  ++..
T Consensus        50 ~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~~~~~~---p~~g~~~~~~~~~l~~~~~~~~~~~  125 (366)
T COG1474          50 PTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILNKLGKV---PLTGDSSLEILKRLYDNLSKKGKTV  125 (366)
T ss_pred             CCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHHHcCCC---CCCCCchHHHHHHHHHHHHhcCCeE
Confidence            3799999999999998753323333 78999999999999999999999632   2233456667777777774  5899


Q ss_pred             EEEEeCCCCccccc-c-----------c--------------------ccccccccccceEeecCCChhhhHHHHHHH
Q 046006           79 VLLLDDKWERVDLN-K-----------G--------------------LFVCGLVEANKNFKVECLSDNDAWELLRQK  124 (180)
Q Consensus        79 LlVlDdv~~~~~l~-~-----------g--------------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~  124 (180)
                      ++|||+++....-. .           +                    .++.+..+... +..+|-+.+|-.+.+..+
T Consensus       126 IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~-I~F~pY~a~el~~Il~~R  202 (366)
T COG1474         126 IVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSE-IVFPPYTAEELYDILRER  202 (366)
T ss_pred             EEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCcce-eeeCCCCHHHHHHHHHHH
Confidence            99999998753221 0           0                    34444444433 778888899988888887

>PRK13342 recombination factor protein RarA; Reviewed

Probab=97.93  E-value=0.00015  Score=59.05  Aligned_cols=39  Identities=21%  Similarity=0.322  Sum_probs=30.2

Q ss_pred             ceEeecCCChhhhHHHHHHH--------------HHHHHHHHcCCChHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK--------------LAQTVAKKCVGLPLALITI  143 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~--------------~~~~i~~~c~g~PLal~~~  143 (180)
                      ..+.+.+++.++..+++.+.              ..+.|++.|+|.|..+..+
T Consensus       144 ~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~  196 (413)
T PRK13342        144 QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNL  196 (413)
T ss_pred             eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence            57889999999999998874              3457888899988655433

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=97.91  E-value=4.5e-05  Score=62.11  Aligned_cols=82  Identities=15%  Similarity=0.093  Sum_probs=52.0

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC--CCcE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS--KKKF   78 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~--~k~~   78 (180)
                      ++|+|||++|+.+++.+ .....|+.+.||.+++.++..+++..+    ... ...... ......+.+.....  ++++
T Consensus       202 ppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~----rP~-~vgy~~-~~G~f~~~~~~A~~~p~~~~  274 (459)
T PRK11331        202 PPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGY----RPN-GVGFRR-KDGIFYNFCQQAKEQPEKKY  274 (459)
T ss_pred             CCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhccc----CCC-CCCeEe-cCchHHHHHHHHHhcccCCc
Confidence            68999999999999886 344577888899999988877775422    010 000000 01112223333322  4689


Q ss_pred             EEEEeCCCCcc
Q 046006           79 VLLLDDKWERV   89 (180)
Q Consensus        79 LlVlDdv~~~~   89 (180)
                      +||+|++...+
T Consensus       275 vliIDEINRan  285 (459)
T PRK11331        275 VFIIDEINRAN  285 (459)
T ss_pred             EEEEehhhccC
Confidence            99999998764

>PRK06893 DNA replication initiation factor; Validated

Probab=97.87  E-value=0.0002  Score=53.68  Aligned_cols=52  Identities=12%  Similarity=0.085  Sum_probs=38.7

Q ss_pred             cccccccccceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHHHHh
Q 046006           96 FVCGLVEANKNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIGRAI  147 (180)
Q Consensus        96 ~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~~~L  147 (180)
                      ++.+++.....+++++++.++.++++.+.           ...-|++++.|..-.+..+-..|
T Consensus       145 ~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l  207 (229)
T PRK06893        145 DLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLL  207 (229)
T ss_pred             hHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            34444555568899999999999999977           67788888988776665444444

>PRK12608 transcription termination factor Rho; Provisional

Probab=97.85  E-value=9.9e-05  Score=58.79  Aligned_cols=84  Identities=20%  Similarity=0.183  Sum_probs=52.9

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeE-EEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCCc---ChHHHHHHHHHHh--C
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCV-IWIVVSKD-LQLEKIQEIVGKKVGLLDGDSWKNK---NSEEKALEIFRFL--S   74 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~-~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~---~~~~~~~~l~~~L--~   74 (180)
                      +|+|||||++.+++...  .++-+.. +|+.+++. ....++.+.+...+..+ ..+....   ..........+.+  .
T Consensus       142 pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas-t~de~~~~~~~v~~~~~~~Ae~f~~~  218 (380)
T PRK12608        142 PRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS-TFDRPPDEHIRVAELVLERAKRLVEQ  218 (380)
T ss_pred             CCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee-cCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence            79999999999988752  2344553 67677764 47888999888877543 1111111   1111222333333  5


Q ss_pred             CCcEEEEEeCCCCc
Q 046006           75 KKKFVLLLDDKWER   88 (180)
Q Consensus        75 ~k~~LlVlDdv~~~   88 (180)
                      +++.+||+|++...
T Consensus       219 GkdVVLvlDsltr~  232 (380)
T PRK12608        219 GKDVVILLDSLTRL  232 (380)
T ss_pred             CCCEEEEEeCcHHH
Confidence            89999999998643

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=97.84  E-value=0.00031  Score=57.79  Aligned_cols=128  Identities=13%  Similarity=0.084  Sum_probs=78.1

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEEE
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVLL   81 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlV   81 (180)
                      +|+|||.|++.+++.+...... ..++++      +..+++..+...+...          ......+++.+++ .-+||
T Consensus       150 ~G~GKTHLl~Ai~~~l~~~~~~-~~v~yv------~~~~f~~~~~~~l~~~----------~~~~~~~~~~~~~-~dvLi  211 (450)
T PRK14087        150 SGMGKTHLLKAAKNYIESNFSD-LKVSYM------SGDEFARKAVDILQKT----------HKEIEQFKNEICQ-NDVLI  211 (450)
T ss_pred             CCCcHHHHHHHHHHHHHHhCCC-CeEEEE------EHHHHHHHHHHHHHHh----------hhHHHHHHHHhcc-CCEEE
Confidence            6999999999999864211111 233444      3456666666665321          0122334444443 34788


Q ss_pred             EeCCCCccc-------c----cc----c------------------ccccccccccceEeecCCChhhhHHHHHHH----
Q 046006           82 LDDKWERVD-------L----NK----G------------------LFVCGLVEANKNFKVECLSDNDAWELLRQK----  124 (180)
Q Consensus        82 lDdv~~~~~-------l----~~----g------------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~----  124 (180)
                      +||+.....       +    +.    |                  .++.+++...-+..+++++.++-.+++.++    
T Consensus       212 IDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~  291 (450)
T PRK14087        212 IDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQ  291 (450)
T ss_pred             EeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhc
Confidence            899865421       0    00    1                  334444445567889999999999999877    


Q ss_pred             ---------HHHHHHHHcCCChHHHHHHHHHh
Q 046006          125 ---------LAQTVAKKCVGLPLALITIGRAI  147 (180)
Q Consensus       125 ---------~~~~i~~~c~g~PLal~~~~~~L  147 (180)
                               ...-|++.+.|.|-.+.-+...+
T Consensus       292 gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l  323 (450)
T PRK14087        292 NIKQEVTEEAINFISNYYSDDVRKIKGSVSRL  323 (450)
T ss_pred             CCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence                     45668888888887765554333

>PRK08727 hypothetical protein; Validated

Probab=97.81  E-value=0.00022  Score=53.61  Aligned_cols=45  Identities=11%  Similarity=0.002  Sum_probs=33.4

Q ss_pred             cccccccccceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006           96 FVCGLVEANKNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL  140 (180)
Q Consensus        96 ~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal  140 (180)
                      ++.+++.....+++++++.++-.+++.++           ....|++.+.|-.-.+
T Consensus       146 dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~  201 (233)
T PRK08727        146 DLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGL  201 (233)
T ss_pred             HHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHH
Confidence            34444444568899999999999999985           6778888888765444

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.79  E-value=0.00038  Score=53.80  Aligned_cols=83  Identities=13%  Similarity=0.178  Sum_probs=59.5

Q ss_pred             CCCcHHHHHHHHHcccccccCCCC----eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC-CC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFD----CVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS-KK   76 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~----~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~-~k   76 (180)
                      +|.|||+++++++..+....+ -+    .++.|.+...++...+...|+.+++.+ .  ....+...+...+.+.|+ -+
T Consensus        70 snnGKT~Ii~rF~~~hp~~~d-~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP-~--~~~~~~~~~~~~~~~llr~~~  145 (302)
T PF05621_consen   70 SNNGKTMIIERFRRLHPPQSD-EDAERIPVVYVQMPPEPDERRFYSAILEALGAP-Y--RPRDRVAKLEQQVLRLLRRLG  145 (302)
T ss_pred             CCCcHHHHHHHHHHHCCCCCC-CCCccccEEEEecCCCCChHHHHHHHHHHhCcc-c--CCCCCHHHHHHHHHHHHHHcC
Confidence            689999999999977642111 11    366677888999999999999999887 2  223445555666666664 34


Q ss_pred             cEEEEEeCCCCc
Q 046006           77 KFVLLLDDKWER   88 (180)
Q Consensus        77 ~~LlVlDdv~~~   88 (180)
                      --+||+|++.+.
T Consensus       146 vrmLIIDE~H~l  157 (302)
T PF05621_consen  146 VRMLIIDEFHNL  157 (302)
T ss_pred             CcEEEeechHHH
Confidence            558999999764

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.75  E-value=0.00012  Score=49.25  Aligned_cols=81  Identities=23%  Similarity=0.106  Sum_probs=44.3

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCC-cEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKK-KFV   79 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k-~~L   79 (180)
                      .+|+||||+|+.++....   .....++.++.+........... ....    ...............+.+..+.. ..+
T Consensus        10 ~~G~GKTtl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v   81 (148)
T smart00382       10 PPGSGKTTLARALARELG---PPGGGVIYIDGEDILEEVLDQLL-LIIV----GGKKASGSGELRLRLALALARKLKPDV   81 (148)
T ss_pred             CCCCcHHHHHHHHHhccC---CCCCCEEEECCEEccccCHHHHH-hhhh----hccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            479999999999999863   11124566654443322222211 1111    11122233344444555555544 499


Q ss_pred             EEEeCCCCcc
Q 046006           80 LLLDDKWERV   89 (180)
Q Consensus        80 lVlDdv~~~~   89 (180)
                      +++|++....
T Consensus        82 iiiDei~~~~   91 (148)
T smart00382       82 LILDEITSLL   91 (148)
T ss_pred             EEEECCcccC
Confidence            9999998764

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.75  E-value=0.00014  Score=49.48  Aligned_cols=70  Identities=24%  Similarity=0.155  Sum_probs=37.6

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL   80 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll   80 (180)
                      .+|+|||++++.+++...   ..-..++++...+..........+...               ............++.++
T Consensus        27 ~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l   88 (151)
T cd00009          27 PPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF---------------LVRLLFELAEKAKPGVL   88 (151)
T ss_pred             CCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh---------------hHhHHHHhhccCCCeEE
Confidence            479999999999999853   112345555544332222111111000               01111122234567899


Q ss_pred             EEeCCCCc
Q 046006           81 LLDDKWER   88 (180)
Q Consensus        81 VlDdv~~~   88 (180)
                      ++||++..
T Consensus        89 ilDe~~~~   96 (151)
T cd00009          89 FIDEIDSL   96 (151)
T ss_pred             EEeChhhh
Confidence            99999864

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]

Probab=97.73  E-value=0.00078  Score=50.73  Aligned_cols=137  Identities=19%  Similarity=0.205  Sum_probs=86.0

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh-CCCc-E
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL-SKKK-F   78 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~k~-~   78 (180)
                      -|+|||.+++.+...+.     -+.++=+.++. ..+...+...++..+..+ ....-....++..+.+.... ++++ .
T Consensus        60 vGsGKTv~~Ral~~s~~-----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~-p~~~~~~~~e~~~~~L~al~~~g~r~v  133 (269)
T COG3267          60 VGSGKTVLRRALLASLN-----EDQVAVVVIDKPTLSDATLLEAIVADLESQ-PKVNVNAVLEQIDRELAALVKKGKRPV  133 (269)
T ss_pred             CCCchhHHHHHHHHhcC-----CCceEEEEecCcchhHHHHHHHHHHHhccC-ccchhHHHHHHHHHHHHHHHHhCCCCe
Confidence            38999999996655531     12223255443 557888889998888663 21111223334444444444 4666 8


Q ss_pred             EEEEeCCCCccc--ccc--------------------c-ccccccc---------cccce-EeecCCChhhhHHHHHHH-
Q 046006           79 VLLLDDKWERVD--LNK--------------------G-LFVCGLV---------EANKN-FKVECLSDNDAWELLRQK-  124 (180)
Q Consensus        79 LlVlDdv~~~~~--l~~--------------------g-~~~~~~~---------~~~~~-~~l~~L~~~~a~~Lf~~~-  124 (180)
                      .++.||..+...  ++.                    | ..+...+         .-..+ |+++|++.++...++..+ 
T Consensus       134 ~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~L  213 (269)
T COG3267         134 VLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRL  213 (269)
T ss_pred             EEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHH
Confidence            999999876531  111                    1 1111100         01123 899999999999888888 


Q ss_pred             -------------HHHHHHHHcCCChHHHHHHH
Q 046006          125 -------------LAQTVAKKCVGLPLALITIG  144 (180)
Q Consensus       125 -------------~~~~i~~~c~g~PLal~~~~  144 (180)
                                   ....|.....|.|.++..++
T Consensus       214 e~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~  246 (269)
T COG3267         214 EGAGLPEPLFSDDALLLIHEASQGIPRLINNLA  246 (269)
T ss_pred             hccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence                         68889999999999987655

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=97.70  E-value=0.00036  Score=51.94  Aligned_cols=50  Identities=12%  Similarity=0.006  Sum_probs=32.7

Q ss_pred             ccccccccccceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHH
Q 046006           95 LFVCGLVEANKNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIG  144 (180)
Q Consensus        95 ~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~  144 (180)
                      .++.+++.....+++++++.++-.+++.+.           ...-|++.+.+..-.+..+-
T Consensus       149 ~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l  209 (219)
T PF00308_consen  149 PDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGAL  209 (219)
T ss_dssp             HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred             hhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHH
Confidence            445555566678999999999999999987           56677777776665555443

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PF13173 AAA_14: AAA domain

Probab=97.69  E-value=6.9e-05  Score=50.93  Aligned_cols=69  Identities=19%  Similarity=0.262  Sum_probs=41.1

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL   80 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll   80 (180)
                      +.|+|||||+++++.++.    ....+++++..........                   +.+ ..+.+.+...+++.++
T Consensus        10 ~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~-------------------~~~-~~~~~~~~~~~~~~~i   65 (128)
T PF13173_consen   10 PRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLA-------------------DPD-LLEYFLELIKPGKKYI   65 (128)
T ss_pred             CCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHh-------------------hhh-hHHHHHHhhccCCcEE
Confidence            358999999999998842    3345667665543221100                   000 2233333344477899


Q ss_pred             EEeCCCCcccccc
Q 046006           81 LLDDKWERVDLNK   93 (180)
Q Consensus        81 VlDdv~~~~~l~~   93 (180)
                      +||++....+|..
T Consensus        66 ~iDEiq~~~~~~~   78 (128)
T PF13173_consen   66 FIDEIQYLPDWED   78 (128)
T ss_pred             EEehhhhhccHHH
Confidence            9999988765543

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=97.68  E-value=0.00058  Score=54.14  Aligned_cols=101  Identities=20%  Similarity=0.180  Sum_probs=62.8

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL   80 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll   80 (180)
                      ++|+||||||+.+... ..  .+  ...||..|-...-..-++.|+++-..                  ...+.++|.+|
T Consensus       170 ppG~GKTtlArlia~t-sk--~~--SyrfvelSAt~a~t~dvR~ife~aq~------------------~~~l~krkTil  226 (554)
T KOG2028|consen  170 PPGTGKTTLARLIAST-SK--KH--SYRFVELSATNAKTNDVRDIFEQAQN------------------EKSLTKRKTIL  226 (554)
T ss_pred             CCCCchHHHHHHHHhh-cC--CC--ceEEEEEeccccchHHHHHHHHHHHH------------------HHhhhcceeEE
Confidence            4899999999999988 22  21  26778777654444444555444310                  11245788999


Q ss_pred             EEeCCCCccccc---------cc--------------ccccccccccceEeecCCChhhhHHHHHHH
Q 046006           81 LLDDKWERVDLN---------KG--------------LFVCGLVEANKNFKVECLSDNDAWELLRQK  124 (180)
Q Consensus        81 VlDdv~~~~~l~---------~g--------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~  124 (180)
                      .+|+|..-+...         .|              .-....++.-.++.|++|+.++-..++.+-
T Consensus       227 FiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ra  293 (554)
T KOG2028|consen  227 FIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRA  293 (554)
T ss_pred             EeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHH
Confidence            999987643221         13              001111122357889999999988888874

>PRK08118 topology modulation protein; Reviewed

Probab=97.67  E-value=9.7e-05  Score=52.65  Aligned_cols=29  Identities=31%  Similarity=0.707  Sum_probs=23.2

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIW   29 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~w   29 (180)
                      ++|+||||||+.+++.+....-+||..+|
T Consensus         9 ~~GsGKSTlak~L~~~l~~~~~~lD~l~~   37 (167)
T PRK08118          9 SGGSGKSTLARQLGEKLNIPVHHLDALFW   37 (167)
T ss_pred             CCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence            48999999999999986433356787776

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.67  E-value=0.00028  Score=52.37  Aligned_cols=42  Identities=17%  Similarity=0.351  Sum_probs=29.5

Q ss_pred             eEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHHHHh
Q 046006          106 NFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIGRAI  147 (180)
Q Consensus       106 ~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~~~L  147 (180)
                      ..+++..+.+|-.++..+.           .+.+|+++|.|-|--..-+-...
T Consensus       173 ~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rv  225 (233)
T PF05496_consen  173 VLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRV  225 (233)
T ss_dssp             EEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred             ecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence            4578899999998888765           79999999999997555444444

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=97.62  E-value=0.0017  Score=52.81  Aligned_cols=118  Identities=22%  Similarity=0.148  Sum_probs=68.1

Q ss_pred             CCCCcHHHHHHHHHcccccccCCC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDF-DCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV   79 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L   79 (180)
                      .+|+|||.|++.+++...  .... ..+++++      ..++...+...+...        ..+.    +.+.+++ .-+
T Consensus       144 ~~G~GKThL~~ai~~~l~--~~~~~~~v~yi~------~~~~~~~~~~~~~~~--------~~~~----~~~~~~~-~dl  202 (405)
T TIGR00362       144 GVGLGKTHLLHAIGNEIL--ENNPNAKVVYVS------SEKFTNDFVNALRNN--------KMEE----FKEKYRS-VDL  202 (405)
T ss_pred             CCCCcHHHHHHHHHHHHH--HhCCCCcEEEEE------HHHHHHHHHHHHHcC--------CHHH----HHHHHHh-CCE
Confidence            379999999999999853  1221 2345553      334444555444211        1222    2333332 337


Q ss_pred             EEEeCCCCcccc-----------cc----c------------------ccccccccccceEeecCCChhhhHHHHHHH--
Q 046006           80 LLLDDKWERVDL-----------NK----G------------------LFVCGLVEANKNFKVECLSDNDAWELLRQK--  124 (180)
Q Consensus        80 lVlDdv~~~~~l-----------~~----g------------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~--  124 (180)
                      |+|||++....-           +.    |                  .++.+++.....+.+++.+.++-.+++.+.  
T Consensus       203 LiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~  282 (405)
T TIGR00362       203 LLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAE  282 (405)
T ss_pred             EEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence            888888753210           00    1                  233344444457889999999999998887  


Q ss_pred             ---------HHHHHHHHcCCChHH
Q 046006          125 ---------LAQTVAKKCVGLPLA  139 (180)
Q Consensus       125 ---------~~~~i~~~c~g~PLa  139 (180)
                               ....|++.+.|.+-.
T Consensus       283 ~~~~~l~~e~l~~ia~~~~~~~r~  306 (405)
T TIGR00362       283 EEGLELPDEVLEFIAKNIRSNVRE  306 (405)
T ss_pred             HcCCCCCHHHHHHHHHhcCCCHHH
Confidence                     556666666665543

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=97.58  E-value=0.0011  Score=54.36  Aligned_cols=104  Identities=26%  Similarity=0.230  Sum_probs=61.1

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCC-eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFD-CVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV   79 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L   79 (180)
                      .+|+|||+|++.+++.+.  +.+.. .++|++.      .+++..+...+...        +.+    ..++.++.+.-+
T Consensus       138 ~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~------~~f~~~~~~~~~~~--------~~~----~f~~~~~~~~dv  197 (440)
T PRK14088        138 GVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVDSMKEG--------KLN----EFREKYRKKVDV  197 (440)
T ss_pred             CCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHHHhcc--------cHH----HHHHHHHhcCCE
Confidence            379999999999999852  22233 3556643      45555665555221        122    233333344557


Q ss_pred             EEEeCCCCcc-------cc----cc----c------------------ccccccccccceEeecCCChhhhHHHHHHH
Q 046006           80 LLLDDKWERV-------DL----NK----G------------------LFVCGLVEANKNFKVECLSDNDAWELLRQK  124 (180)
Q Consensus        80 lVlDdv~~~~-------~l----~~----g------------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~  124 (180)
                      |++||+....       .+    +.    |                  .++.+++....++++++.+.+.-.+++.+.
T Consensus       198 LlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~  275 (440)
T PRK14088        198 LLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKM  275 (440)
T ss_pred             EEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHH
Confidence            8888887431       11    00    1                  233344444457789999999888888877

>PRK07261 topology modulation protein; Provisional

Probab=97.57  E-value=0.00023  Score=50.91  Aligned_cols=29  Identities=21%  Similarity=0.436  Sum_probs=20.2

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIW   29 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~w   29 (180)
                      ++|+||||||+.+...+....-+.|...|
T Consensus         8 ~~GsGKSTla~~l~~~~~~~~i~~D~~~~   36 (171)
T PRK07261          8 YSGSGKSTLARKLSQHYNCPVLHLDTLHF   36 (171)
T ss_pred             CCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence            58999999999998764222234465666

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=97.53  E-value=0.0015  Score=53.79  Aligned_cols=117  Identities=23%  Similarity=0.175  Sum_probs=66.1

Q ss_pred             CCCCcHHHHHHHHHcccccccCC-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTD-FDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV   79 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L   79 (180)
                      .+|+|||+|++.+++...  ..+ --.+++++.      .++...+...+...        ..+    .+.+.++ +.-+
T Consensus       156 ~~G~GKThL~~ai~~~~~--~~~~~~~v~yi~~------~~~~~~~~~~~~~~--------~~~----~~~~~~~-~~dl  214 (450)
T PRK00149        156 GVGLGKTHLLHAIGNYIL--EKNPNAKVVYVTS------EKFTNDFVNALRNN--------TME----EFKEKYR-SVDV  214 (450)
T ss_pred             CCCCCHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHHHHcC--------cHH----HHHHHHh-cCCE
Confidence            379999999999999853  121 123445533      33444444444211        112    2233333 2347


Q ss_pred             EEEeCCCCccc-----------ccc----c------------------ccccccccccceEeecCCChhhhHHHHHHH--
Q 046006           80 LLLDDKWERVD-----------LNK----G------------------LFVCGLVEANKNFKVECLSDNDAWELLRQK--  124 (180)
Q Consensus        80 lVlDdv~~~~~-----------l~~----g------------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~--  124 (180)
                      |+|||++....           ++.    |                  .++.+++....++++++.+.++-..++.+.  
T Consensus       215 LiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~  294 (450)
T PRK00149        215 LLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAE  294 (450)
T ss_pred             EEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHH
Confidence            77788864311           000    1                  223444444467899999999999998887  


Q ss_pred             ---------HHHHHHHHcCCChH
Q 046006          125 ---------LAQTVAKKCVGLPL  138 (180)
Q Consensus       125 ---------~~~~i~~~c~g~PL  138 (180)
                               ....|++.+.|..-
T Consensus       295 ~~~~~l~~e~l~~ia~~~~~~~R  317 (450)
T PRK00149        295 EEGIDLPDEVLEFIAKNITSNVR  317 (450)
T ss_pred             HcCCCCCHHHHHHHHcCcCCCHH
Confidence                     45556666655543

>PTZ00202 tuzin; Provisional

Probab=97.53  E-value=0.0028  Score=51.85  Aligned_cols=109  Identities=17%  Similarity=0.143  Sum_probs=63.3

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh-----C-
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL-----S-   74 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L-----~-   74 (180)
                      ++|+|||||++.+....    +  ...++++..   +..++++.|+.+||.+ ..    ....++.+.+.+.+     . 
T Consensus       294 ~~G~GKTTLlR~~~~~l----~--~~qL~vNpr---g~eElLr~LL~ALGV~-p~----~~k~dLLrqIqeaLl~~~~e~  359 (550)
T PTZ00202        294 FRGCGKSSLCRSAVRKE----G--MPAVFVDVR---GTEDTLRSVVKALGVP-NV----EACGDLLDFISEACRRAKKMN  359 (550)
T ss_pred             CCCCCHHHHHHHHHhcC----C--ceEEEECCC---CHHHHHHHHHHHcCCC-Cc----ccHHHHHHHHHHHHHHHHHhC
Confidence            47999999999999874    2  123333333   6799999999999975 21    22234444444444     2 


Q ss_pred             CCcEEEEEeCCCCcccccc--c--------cccc--------ccc-------cccceEeecCCChhhhHHHHHHH
Q 046006           75 KKKFVLLLDDKWERVDLNK--G--------LFVC--------GLV-------EANKNFKVECLSDNDAWELLRQK  124 (180)
Q Consensus        75 ~k~~LlVlDdv~~~~~l~~--g--------~~~~--------~~~-------~~~~~~~l~~L~~~~a~~Lf~~~  124 (180)
                      +++.+||+-= .+.+.+..  +        .+.|        ...       .--.-|.+++++.++|.+.-.+.
T Consensus       360 GrtPVLII~l-reg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~  433 (550)
T PTZ00202        360 GETPLLVLKL-REGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA  433 (550)
T ss_pred             CCCEEEEEEe-cCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence            5666666542 22222222  1        0000        000       11145778889999988776655

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.51  E-value=0.00035  Score=52.55  Aligned_cols=28  Identities=32%  Similarity=0.475  Sum_probs=22.7

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEe
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVV   32 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~   32 (180)
                      +|+|||+|...+.....   ..|+.++.++-
T Consensus        22 sGSGKT~li~~lL~~~~---~~f~~I~l~t~   49 (241)
T PF04665_consen   22 SGSGKTTLIKSLLYYLR---HKFDHIFLITP   49 (241)
T ss_pred             CCCCHHHHHHHHHHhhc---ccCCEEEEEec
Confidence            79999999999988754   78877777654

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK04195 replication factor C large subunit; Provisional

Probab=97.51  E-value=0.0048  Score=51.35  Aligned_cols=36  Identities=14%  Similarity=0.106  Sum_probs=27.7

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL  140 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal  140 (180)
                      ..+.+++++.++....+.+.           ....|++.++|-.-.+
T Consensus       153 ~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~a  199 (482)
T PRK04195        153 LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSA  199 (482)
T ss_pred             eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence            56788999999888887765           6788888888755443

>PRK08084 DNA replication initiation factor; Provisional

Probab=97.49  E-value=0.002  Score=48.45  Aligned_cols=53  Identities=13%  Similarity=0.131  Sum_probs=38.5

Q ss_pred             ccccccccccceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHHHHh
Q 046006           95 LFVCGLVEANKNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIGRAI  147 (180)
Q Consensus        95 ~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~~~L  147 (180)
                      .++.+++....++++++++.++-.+++.++           ...-|++.+.|..-.+..+-..|
T Consensus       150 ~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l  213 (235)
T PRK08084        150 PDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQL  213 (235)
T ss_pred             HHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence            445556666678999999999999998875           67778888887766554444333

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.48  E-value=0.00019  Score=48.46  Aligned_cols=17  Identities=35%  Similarity=0.438  Sum_probs=15.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||++|+.+++.+
T Consensus         6 ~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    6 PPGTGKTTLARALAQYL   22 (132)
T ss_dssp             STTSSHHHHHHHHHHHT
T ss_pred             cCCCCeeHHHHHHHhhc
Confidence            48999999999999995

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR03689 pup_AAA proteasome ATPase

Probab=97.46  E-value=0.0019  Score=53.79  Aligned_cols=20  Identities=10%  Similarity=0.190  Sum_probs=17.8

Q ss_pred             ceEeecCCChhhhHHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK  124 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~  124 (180)
                      ..++++..+.++..++|..+
T Consensus       358 ~~I~~~~Pd~e~r~~Il~~~  377 (512)
T TIGR03689       358 VKIRIERPDAEAAADIFSKY  377 (512)
T ss_pred             eEEEeCCCCHHHHHHHHHHH
Confidence            46889999999999999887

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.45  E-value=0.0027  Score=55.96  Aligned_cols=36  Identities=17%  Similarity=0.166  Sum_probs=30.4

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL  140 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal  140 (180)
                      ..+++++|+.++..+.+.+.           .+..|++.++|.|--+
T Consensus       171 q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~A  217 (944)
T PRK14949        171 LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDA  217 (944)
T ss_pred             eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence            57899999999999988884           6788999999988533

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.45  E-value=0.00042  Score=49.57  Aligned_cols=18  Identities=33%  Similarity=0.562  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHcccc
Q 046006            1 MGGVGKTTLLTHINNKFL   18 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~   18 (180)
                      .+|+|||+|.++++....
T Consensus        32 ~~G~GKT~ll~~~~~~~~   49 (185)
T PF13191_consen   32 ESGSGKTSLLRALLDRLA   49 (185)
T ss_dssp             -TTSSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            479999999999998864

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=97.41  E-value=0.0013  Score=48.76  Aligned_cols=43  Identities=19%  Similarity=0.182  Sum_probs=33.6

Q ss_pred             cceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHHHH
Q 046006          104 NKNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIGRA  146 (180)
Q Consensus       104 ~~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~~~  146 (180)
                      ...+++++++.++...++...           ....|++.+.|.|..+..+-..
T Consensus       151 ~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~  204 (226)
T TIGR03420       151 GLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDA  204 (226)
T ss_pred             CeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence            357899999999999988865           6778888888888877655433

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=97.41  E-value=0.002  Score=46.59  Aligned_cols=34  Identities=18%  Similarity=0.149  Sum_probs=28.1

Q ss_pred             ceEeecCCChhhhHHHHHHH-----HHHHHHHHcCCChH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----LAQTVAKKCVGLPL  138 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----~~~~i~~~c~g~PL  138 (180)
                      ..+++.+++.++..+.+.+.     .+..|++.++|.|.
T Consensus       148 ~~~~~~~~~~~~~~~~l~~~gi~~~~~~~i~~~~~g~~r  186 (188)
T TIGR00678       148 QVLPFPPLSEEALLQWLIRQGISEEAAELLLALAGGSPG  186 (188)
T ss_pred             EEeeCCCCCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcc
Confidence            57899999999998888776     67788888888775

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=97.39  E-value=0.0012  Score=49.20  Aligned_cols=48  Identities=15%  Similarity=0.119  Sum_probs=36.4

Q ss_pred             cccccceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHHHHh
Q 046006          100 LVEANKNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIGRAI  147 (180)
Q Consensus       100 ~~~~~~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~~~L  147 (180)
                      .+.....+++++++.++-..++.+.           ....+++.+.|.+..+..+-..|
T Consensus       145 r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l  203 (227)
T PRK08903        145 RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDAL  203 (227)
T ss_pred             HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            3333468899999998877777764           67788888999998877666555

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.39  E-value=0.0046  Score=51.64  Aligned_cols=36  Identities=22%  Similarity=0.239  Sum_probs=30.3

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL  140 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal  140 (180)
                      ..+++.+++.++..+.+.+.           ....|++.++|.+--+
T Consensus       168 ~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~a  214 (504)
T PRK14963        168 QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDA  214 (504)
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence            57899999999999998875           6778999999988544

>PRK08116 hypothetical protein; Validated

Probab=97.37  E-value=0.00065  Score=52.16  Aligned_cols=67  Identities=25%  Similarity=0.296  Sum_probs=40.0

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEEE
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVLL   81 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlV   81 (180)
                      +|+|||.||.++++.+.  .. ...+++++      ..+++..+...+...     ...+    ...+.+.+.+-. |||
T Consensus       123 ~GtGKThLa~aia~~l~--~~-~~~v~~~~------~~~ll~~i~~~~~~~-----~~~~----~~~~~~~l~~~d-lLv  183 (268)
T PRK08116        123 VGTGKTYLAACIANELI--EK-GVPVIFVN------FPQLLNRIKSTYKSS-----GKED----ENEIIRSLVNAD-LLI  183 (268)
T ss_pred             CCCCHHHHHHHHHHHHH--Hc-CCeEEEEE------HHHHHHHHHHHHhcc-----cccc----HHHHHHHhcCCC-EEE
Confidence            69999999999999863  22 23455654      445666665554321     1111    222344455444 899


Q ss_pred             EeCCCC
Q 046006           82 LDDKWE   87 (180)
Q Consensus        82 lDdv~~   87 (180)
                      |||+..
T Consensus       184 iDDlg~  189 (268)
T PRK08116        184 LDDLGA  189 (268)
T ss_pred             EecccC
Confidence            999953

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=97.36  E-value=0.0049  Score=50.72  Aligned_cols=102  Identities=16%  Similarity=0.135  Sum_probs=58.9

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL   80 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll   80 (180)
                      .+|+|||+|++.+++.+..  .. -.+++++      ...+...+...+...        .    ...+++.++ ..-+|
T Consensus       149 ~~G~GKTHLl~Ai~~~l~~--~~-~~v~yi~------~~~f~~~~~~~l~~~--------~----~~~f~~~~~-~~dvL  206 (445)
T PRK12422        149 PEGSGKTHLMQAAVHALRE--SG-GKILYVR------SELFTEHLVSAIRSG--------E----MQRFRQFYR-NVDAL  206 (445)
T ss_pred             CCCCCHHHHHHHHHHHHHH--cC-CCEEEee------HHHHHHHHHHHHhcc--------h----HHHHHHHcc-cCCEE
Confidence            4799999999999998531  22 2344553      334444444444211        1    122333333 33477


Q ss_pred             EEeCCCCcccc-----------c----cc------------------ccccccccccceEeecCCChhhhHHHHHHH
Q 046006           81 LLDDKWERVDL-----------N----KG------------------LFVCGLVEANKNFKVECLSDNDAWELLRQK  124 (180)
Q Consensus        81 VlDdv~~~~~l-----------~----~g------------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~  124 (180)
                      ++||+.....-           +    .|                  .++.+++....++++++++.++-..++.++
T Consensus       207 iIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k  283 (445)
T PRK12422        207 FIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK  283 (445)
T ss_pred             EEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence            77887654210           0    01                  333444444568889999999999988876

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=97.35  E-value=0.0011  Score=58.24  Aligned_cols=121  Identities=12%  Similarity=0.045  Sum_probs=73.6

Q ss_pred             CCCCcHHHHHHHHHccccccc--CCCC--eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC--
Q 046006            1 MGGVGKTTLLTHINNKFLVSS--TDFD--CVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS--   74 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~--~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~--   74 (180)
                      ++|+|||+.++.+...+....  ....  .+++|+...-.+...++..|.+++... . .....+..+....+...+.  
T Consensus       789 ~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~-~-P~~GlsS~evLerLF~~L~k~  866 (1164)
T PTZ00112        789 MPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNK-K-PPNALNSFKILDRLFNQNKKD  866 (1164)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCC-C-CCccccHHHHHHHHHhhhhcc
Confidence            489999999999988763211  1122  256677666678888999999888443 1 1222233445555555542  


Q ss_pred             -CCcEEEEEeCCCCccc-----c------cc--c-------------------ccccccccccceEeecCCChhhhHHHH
Q 046006           75 -KKKFVLLLDDKWERVD-----L------NK--G-------------------LFVCGLVEANKNFKVECLSDNDAWELL  121 (180)
Q Consensus        75 -~k~~LlVlDdv~~~~~-----l------~~--g-------------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf  121 (180)
                       ....+||||+++....     +      ..  +                   .++.+++.. ..+..+|++.++-.+++
T Consensus       867 ~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~-eeIvF~PYTaEQL~dIL  945 (1164)
T PTZ00112        867 NRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAF-GRLVFSPYKGDEIEKII  945 (1164)
T ss_pred             cccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhcccc-ccccCCCCCHHHHHHHH
Confidence             2346999999986531     1      00  1                   111122221 23566888999998888


Q ss_pred             HHH
Q 046006          122 RQK  124 (180)
Q Consensus       122 ~~~  124 (180)
                      ..+
T Consensus       946 k~R  948 (1164)
T PTZ00112        946 KER  948 (1164)
T ss_pred             HHH
Confidence            877

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=97.35  E-value=0.00072  Score=58.65  Aligned_cols=32  Identities=25%  Similarity=0.440  Sum_probs=24.4

Q ss_pred             ceEeecCCChhhhHHHHHHH------------------HHHHHHHHcCCC
Q 046006          105 KNFKVECLSDNDAWELLRQK------------------LAQTVAKKCVGL  136 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~------------------~~~~i~~~c~g~  136 (180)
                      ..+.+++|+.++...++.+.                  ....|++.+.|.
T Consensus       161 ~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD  210 (725)
T PRK13341        161 RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGD  210 (725)
T ss_pred             cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCC
Confidence            47889999999999888764                  456667777664

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=97.35  E-value=0.0049  Score=51.45  Aligned_cols=36  Identities=19%  Similarity=0.240  Sum_probs=29.6

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL  140 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal  140 (180)
                      ..+++++++.++..+.+.+.           ....|++.++|.+--+
T Consensus       180 ~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~a  226 (507)
T PRK06645        180 QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDA  226 (507)
T ss_pred             eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence            46889999999999998876           5778999999987443

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.33  E-value=0.0024  Score=54.53  Aligned_cols=37  Identities=11%  Similarity=0.091  Sum_probs=29.6

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALI  141 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~  141 (180)
                      ..+.++.++.++..+.+.+.           ..+.|++.++|.|....
T Consensus       176 q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdAL  223 (700)
T PRK12323        176 LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDAL  223 (700)
T ss_pred             HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence            57889999999999888764           45778999999986443

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=97.26  E-value=0.0034  Score=50.09  Aligned_cols=77  Identities=12%  Similarity=0.128  Sum_probs=50.4

Q ss_pred             HHHHHHHhC-----CCcEEEEEeCCCCccc---------ccc--c-----------ccccc-cccccceEeecCCChhhh
Q 046006           66 ALEIFRFLS-----KKKFVLLLDDKWERVD---------LNK--G-----------LFVCG-LVEANKNFKVECLSDNDA  117 (180)
Q Consensus        66 ~~~l~~~L~-----~k~~LlVlDdv~~~~~---------l~~--g-----------~~~~~-~~~~~~~~~l~~L~~~~a  117 (180)
                      ++.+.+++.     +++-++|+|+++..+.         ++.  +           ..+.. ..+....+.+.+++.++.
T Consensus       126 iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~  205 (351)
T PRK09112        126 IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDEL  205 (351)
T ss_pred             HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHH
Confidence            345555553     5677999999998742         111  1           11111 111225889999999999


Q ss_pred             HHHHHHH---------HHHHHHHHcCCChHHHHH
Q 046006          118 WELLRQK---------LAQTVAKKCVGLPLALIT  142 (180)
Q Consensus       118 ~~Lf~~~---------~~~~i~~~c~g~PLal~~  142 (180)
                      .+++.+.         ....+++.++|.|.....
T Consensus       206 ~~~L~~~~~~~~~~~~~~~~i~~~s~G~pr~Al~  239 (351)
T PRK09112        206 KKALSHLGSSQGSDGEITEALLQRSKGSVRKALL  239 (351)
T ss_pred             HHHHHHhhcccCCCHHHHHHHHHHcCCCHHHHHH
Confidence            9999874         356889999999975543

>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]

Probab=97.26  E-value=0.00076  Score=53.57  Aligned_cols=86  Identities=21%  Similarity=0.260  Sum_probs=59.5

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC--CC--cChHHHHHHHHH--HhC-
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSW--KN--KNSEEKALEIFR--FLS-   74 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~--~~--~~~~~~~~~l~~--~L~-   74 (180)
                      .|.|||.+.+++++...      -..+|++.-+.++...++..|+.+.+..+....  ..  ....+....+.+  ... 
T Consensus        39 sgTGKT~~~r~~l~~~n------~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~  112 (438)
T KOG2543|consen   39 SGTGKTYLVRQLLRKLN------LENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATN  112 (438)
T ss_pred             CCCchhHHHHHHHhhcC------CcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhc
Confidence            59999999999999851      236899999999999999999999953211111  11  222333344444  222 


Q ss_pred             -CCcEEEEEeCCCCcccccc
Q 046006           75 -KKKFVLLLDDKWERVDLNK   93 (180)
Q Consensus        75 -~k~~LlVlDdv~~~~~l~~   93 (180)
                       ++.++|||||++...+.++
T Consensus       113 ~d~~~~liLDnad~lrD~~a  132 (438)
T KOG2543|consen  113 RDQKVFLILDNADALRDMDA  132 (438)
T ss_pred             cCceEEEEEcCHHhhhccch
Confidence             4589999999998766554

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.26  E-value=0.0066  Score=48.66  Aligned_cols=36  Identities=17%  Similarity=0.253  Sum_probs=29.3

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL  140 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal  140 (180)
                      ..+++.+++.++..+.+.+.           .+..|++.++|.|-.+
T Consensus       171 ~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~a  217 (363)
T PRK14961        171 LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDA  217 (363)
T ss_pred             eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence            57899999999999888764           5677899999988633

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=97.24  E-value=0.015  Score=45.62  Aligned_cols=131  Identities=15%  Similarity=0.175  Sum_probs=70.3

Q ss_pred             CCCCcHHHHHHHHHcccc---cccCCCCeEEEEE-eCCCCCHHHHHHHHHHHhCCCCCCCC-------C-CcChHHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFL---VSSTDFDCVIWIV-VSKDLQLEKIQEIVGKKVGLLDGDSW-------K-NKNSEEKALE   68 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~---~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l~~~~~~~~-------~-~~~~~~~~~~   68 (180)
                      +.|+||||+|+.++..+-   ....|+|...|.. -+......+ .+++.+.+...+....       . ..-.......
T Consensus        34 ~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~na  112 (313)
T PRK05564         34 EDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNA  112 (313)
T ss_pred             CCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHHHHhcCcccCCceEEEEechhhcCHHHHHH
Confidence            469999999999987541   1235677666655 344445555 3445554432200000       0 0011223444


Q ss_pred             HHHHhCC---C-cEEEEEeCCCCcccccccccccccccccceEeecCCChhhhHHHHHHH-------HHHHHHHHcCCCh
Q 046006           69 IFRFLSK---K-KFVLLLDDKWERVDLNKGLFVCGLVEANKNFKVECLSDNDAWELLRQK-------LAQTVAKKCVGLP  137 (180)
Q Consensus        69 l~~~L~~---k-~~LlVlDdv~~~~~l~~g~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~-------~~~~i~~~c~g~P  137 (180)
                      +.+.|++   . .++++-++....        ..+-.+....+.+.++++++....+.+.       .+..++..++|.|
T Consensus       113 LLK~LEepp~~t~~il~~~~~~~l--------l~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~  184 (313)
T PRK05564        113 FLKTIEEPPKGVFIILLCENLEQI--------LDTIKSRCQIYKLNRLSKEEIEKFISYKYNDIKEEEKKSAIAFSDGIP  184 (313)
T ss_pred             HHHHhcCCCCCeEEEEEeCChHhC--------cHHHHhhceeeeCCCcCHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCH
Confidence            5555542   1 122222332111        0011122257889999999998888754       4567889999988


Q ss_pred             HHH
Q 046006          138 LAL  140 (180)
Q Consensus       138 Lal  140 (180)
                      .-+
T Consensus       185 ~~a  187 (313)
T PRK05564        185 GKV  187 (313)
T ss_pred             HHH
Confidence            644

>PLN03025 replication factor C subunit; Provisional

Probab=97.22  E-value=0.0023  Score=50.36  Aligned_cols=34  Identities=15%  Similarity=0.012  Sum_probs=27.6

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPL  138 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PL  138 (180)
                      ..+++++++.++-.+.+...           ....|++.++|-.-
T Consensus       151 ~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR  195 (319)
T PLN03025        151 AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMR  195 (319)
T ss_pred             hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence            46889999999988887765           67888999988653

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=97.21  E-value=0.0061  Score=52.93  Aligned_cols=39  Identities=15%  Similarity=0.118  Sum_probs=30.6

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCCh-HHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLP-LALITI  143 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~P-Lal~~~  143 (180)
                      ..+.+++++.++..+.+.+.           ....|++.++|.. -++.++
T Consensus       171 q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLL  221 (830)
T PRK07003        171 LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLT  221 (830)
T ss_pred             EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            57889999999999888875           5678889998865 455543

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=97.21  E-value=0.00099  Score=49.59  Aligned_cols=81  Identities=16%  Similarity=0.121  Sum_probs=45.7

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHH----hCCCCCCCCCCcChH---HHHHHHHHHh
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKK----VGLLDGDSWKNKNSE---EKALEIFRFL   73 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~----l~~~~~~~~~~~~~~---~~~~~l~~~L   73 (180)
                      .+|+|||++|.+++....   ..-..++|++.. .++...+. ++...    +... .......+.+   +..+.+.+.+
T Consensus        31 ~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~  104 (225)
T PRK09361         31 PPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSN-IIIFEPSSFEEQSEAIRKAEKLA  104 (225)
T ss_pred             CCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhC-eEEEeCCCHHHHHHHHHHHHHHH
Confidence            489999999999988742   233567888876 45544432 22222    1000 0001122332   3344445555


Q ss_pred             CCCcEEEEEeCCCC
Q 046006           74 SKKKFVLLLDDKWE   87 (180)
Q Consensus        74 ~~k~~LlVlDdv~~   87 (180)
                      ..+.-++|+|.+..
T Consensus       105 ~~~~~lvVIDsi~a  118 (225)
T PRK09361        105 KENVGLIVLDSATS  118 (225)
T ss_pred             HhcccEEEEeCcHH
Confidence            56778999999854

>PRK05642 DNA replication initiation factor; Validated

Probab=97.20  E-value=0.0075  Score=45.36  Aligned_cols=53  Identities=15%  Similarity=0.133  Sum_probs=37.1

Q ss_pred             ccccccccccceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHHHHh
Q 046006           95 LFVCGLVEANKNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIGRAI  147 (180)
Q Consensus        95 ~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~~~L  147 (180)
                      .++.+++....++++++++.++-.+++..+           ...-|++.+.|..-.+..+-..|
T Consensus       149 ~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l  212 (234)
T PRK05642        149 PDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERL  212 (234)
T ss_pred             ccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            344455555578899999999999998855           66777788887765554444333

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.0062  Score=52.24  Aligned_cols=31  Identities=23%  Similarity=0.260  Sum_probs=22.5

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK   34 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~   34 (180)
                      .|+|||+||+.+++.++  +++.-.+.+++.+.
T Consensus       440 ~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~  470 (952)
T KOG0735|consen  440 KGSGKTNLVKALFDYYS--KDLIAHVEIVSCST  470 (952)
T ss_pred             CCCCHhHHHHHHHHHhc--cccceEEEEEechh
Confidence            69999999999999964  44444455565443

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.18  E-value=0.0043  Score=53.11  Aligned_cols=36  Identities=14%  Similarity=0.069  Sum_probs=29.4

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL  140 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal  140 (180)
                      ..+++++++.++..+.+.+.           ....|++.++|.+-.+
T Consensus       170 q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdA  216 (702)
T PRK14960        170 LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDA  216 (702)
T ss_pred             heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence            57889999999999888765           6778999999977444

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=97.16  E-value=0.0076  Score=51.25  Aligned_cols=29  Identities=17%  Similarity=-0.008  Sum_probs=22.3

Q ss_pred             cccccccccceEeecCCChhhhHHHHHHH
Q 046006           96 FVCGLVEANKNFKVECLSDNDAWELLRQK  124 (180)
Q Consensus        96 ~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~  124 (180)
                      ++.+++...-++++++.+.+.-.+++.++
T Consensus       430 rL~SRf~~GLvv~I~~PD~EtR~aIL~kk  458 (617)
T PRK14086        430 RLRNRFEWGLITDVQPPELETRIAILRKK  458 (617)
T ss_pred             HHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence            34455555568899999999999998877

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=97.16  E-value=0.0037  Score=50.06  Aligned_cols=34  Identities=18%  Similarity=0.185  Sum_probs=27.0

Q ss_pred             cceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006          104 NKNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP  137 (180)
Q Consensus       104 ~~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P  137 (180)
                      +..+.++..+.++..++|..+          ....+++.+.|..
T Consensus       285 d~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~s  328 (364)
T TIGR01242       285 DRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGAS  328 (364)
T ss_pred             ceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCC
Confidence            356788999999999999887          4667888887764

Many proteins may score above the trusted cutoff because an internal

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=97.15  E-value=0.0072  Score=48.96  Aligned_cols=36  Identities=17%  Similarity=0.120  Sum_probs=29.6

Q ss_pred             ceEeecCCChhhhHHHHHHH------HHHHHHHHcCCChHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK------LAQTVAKKCVGLPLAL  140 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~------~~~~i~~~c~g~PLal  140 (180)
                      ..+.+++++.++..+.+.+.      .+..++..++|.|...
T Consensus       169 ~~i~f~~~~~~~i~~~L~~~~~~~~~~a~~la~~s~G~~~~A  210 (394)
T PRK07940        169 RHVALRTPSVEAVAEVLVRRDGVDPETARRAARASQGHIGRA  210 (394)
T ss_pred             eEEECCCCCHHHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHH
Confidence            57889999999999888754      5667899999998644

>PRK09087 hypothetical protein; Validated

Probab=97.12  E-value=0.0076  Score=45.09  Aligned_cols=52  Identities=10%  Similarity=-0.035  Sum_probs=39.3

Q ss_pred             cccccccccceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHHHHh
Q 046006           96 FVCGLVEANKNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIGRAI  147 (180)
Q Consensus        96 ~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~~~L  147 (180)
                      ++.+++....++++++++.++-.+++.++           ...-|++.+.|..-++..+-..|
T Consensus       137 dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L  199 (226)
T PRK09087        137 DLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRL  199 (226)
T ss_pred             cHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            34455556678999999999999999987           67788888888877766544444

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.11  E-value=0.0039  Score=46.29  Aligned_cols=85  Identities=15%  Similarity=0.093  Sum_probs=49.5

Q ss_pred             CCCCcHHHHHHHHHcccccccCC-----CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCCCCcChHHHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTD-----FDCVIWIVVSKDLQLEKIQEIVGKKVGLLDG------DSWKNKNSEEKALEI   69 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~~~~l   69 (180)
                      .+|+|||+||.+++....  ...     =..++|++....++...+ ..+.+..+....      .-....+.++....+
T Consensus        27 ~~GsGKT~l~~~ia~~~~--~~~~~~g~~~~v~yi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l  103 (226)
T cd01393          27 EFGSGKTQLCLQLAVEAQ--LPGELGGLEGKVVYIDTEGAFRPERL-VQLAVRFGLDPEEVLDNIYVARPYNGEQQLEIV  103 (226)
T ss_pred             CCCCChhHHHHHHHHHhh--cccccCCCcceEEEEecCCCCCHHHH-HHHHHHhccchhhhhccEEEEeCCCHHHHHHHH
Confidence            379999999999987631  121     156789887776665444 344444322100      001223455665555


Q ss_pred             HHHhC----CCcEEEEEeCCCCc
Q 046006           70 FRFLS----KKKFVLLLDDKWER   88 (180)
Q Consensus        70 ~~~L~----~k~~LlVlDdv~~~   88 (180)
                      .+...    .+.-|+|+|.+...
T Consensus       104 ~~~~~~~~~~~~~lvVIDsis~l  126 (226)
T cd01393         104 EELERIMSSGRVDLVVVDSVAAL  126 (226)
T ss_pred             HHHHHHhhcCCeeEEEEcCcchh
Confidence            55543    45669999998554

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=97.08  E-value=0.0019  Score=48.23  Aligned_cols=85  Identities=15%  Similarity=0.157  Sum_probs=48.4

Q ss_pred             CCCCcHHHHHHHHHcccccccCC----CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCCcC---hHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTD----FDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD------SWKNKN---SEEKAL   67 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~---~~~~~~   67 (180)
                      .+|+|||+||.+++... .....    ...++|++....++...+ .++++..+.....      .....+   ......
T Consensus        27 ~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~l~  104 (235)
T cd01123          27 EFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNSDHQLQLLE  104 (235)
T ss_pred             CCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCHHHHHHHHH
Confidence            37999999999997552 11121    367899988776665444 3344443322000      001122   233345


Q ss_pred             HHHHHhC-C-CcEEEEEeCCCC
Q 046006           68 EIFRFLS-K-KKFVLLLDDKWE   87 (180)
Q Consensus        68 ~l~~~L~-~-k~~LlVlDdv~~   87 (180)
                      .+.+.+. . +.-|+|+|.+..
T Consensus       105 ~l~~~l~~~~~~~liVIDSis~  126 (235)
T cd01123         105 ELEAILIESSRIKLVIVDSVTA  126 (235)
T ss_pred             HHHHHHhhcCCeeEEEEeCcHH
Confidence            5555553 4 678999999864

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.08  E-value=0.0031  Score=46.36  Aligned_cols=82  Identities=13%  Similarity=0.126  Sum_probs=46.6

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHh-CC--CCCCCCCCcC---hHHHHHHHHHHhC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKV-GL--LDGDSWKNKN---SEEKALEIFRFLS   74 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-~~--~~~~~~~~~~---~~~~~~~l~~~L~   74 (180)
                      .+|+|||++|.+++....   .....++|++... ++...+.+. ++.. ..  ..-......+   .......+.+.+.
T Consensus        20 ~~GsGKT~l~~~~~~~~~---~~g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~   94 (209)
T TIGR02237        20 PPGSGKTNICMILAVNAA---RQGKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGVAIQKTSKFID   94 (209)
T ss_pred             CCCCCHHHHHHHHHHHHH---hCCCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHHHHHHHHHHHh
Confidence            489999999999987742   2346788998765 555554432 2221 00  0000011122   2333555555554


Q ss_pred             C-CcEEEEEeCCCC
Q 046006           75 K-KKFVLLLDDKWE   87 (180)
Q Consensus        75 ~-k~~LlVlDdv~~   87 (180)
                      . +.-++|+|.+..
T Consensus        95 ~~~~~lvVIDSis~  108 (209)
T TIGR02237        95 RDSASLVVVDSFTA  108 (209)
T ss_pred             hcCccEEEEeCcHH
Confidence            3 567999999754

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PRK12377 putative replication protein; Provisional

Probab=97.07  E-value=0.0021  Score=48.72  Aligned_cols=66  Identities=24%  Similarity=0.268  Sum_probs=38.3

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEEE
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVLL   81 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlV   81 (180)
                      +|+|||.||..+++.+.   .....++++++      .+++..+-......       .+..    .+.+.+ .+.=|||
T Consensus       110 ~GtGKThLa~AIa~~l~---~~g~~v~~i~~------~~l~~~l~~~~~~~-------~~~~----~~l~~l-~~~dLLi  168 (248)
T PRK12377        110 PGTGKNHLAAAIGNRLL---AKGRSVIVVTV------PDVMSRLHESYDNG-------QSGE----KFLQEL-CKVDLLV  168 (248)
T ss_pred             CCCCHHHHHHHHHHHHH---HcCCCeEEEEH------HHHHHHHHHHHhcc-------chHH----HHHHHh-cCCCEEE
Confidence            79999999999999863   22233456543      35555554443211       1112    222233 3556999


Q ss_pred             EeCCCCc
Q 046006           82 LDDKWER   88 (180)
Q Consensus        82 lDdv~~~   88 (180)
                      |||+...
T Consensus       169 IDDlg~~  175 (248)
T PRK12377        169 LDEIGIQ  175 (248)
T ss_pred             EcCCCCC
Confidence            9999543

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.02  E-value=0.013  Score=49.36  Aligned_cols=39  Identities=18%  Similarity=0.157  Sum_probs=29.9

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChH-HHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPL-ALITI  143 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PL-al~~~  143 (180)
                      ..+++.+++.++-.+.+.+.           ....|++.++|.+- |+..+
T Consensus       171 ~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlL  221 (546)
T PRK14957        171 IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLL  221 (546)
T ss_pred             eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            57899999999988777764           56888999999664 44444

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.01  E-value=0.0043  Score=51.24  Aligned_cols=35  Identities=14%  Similarity=-0.042  Sum_probs=28.8

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLA  139 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLa  139 (180)
                      ..+.+.+++.++-.+.+.+.           ....|++.++|.+--
T Consensus       173 q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~Rd  218 (484)
T PRK14956        173 QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRD  218 (484)
T ss_pred             heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHH
Confidence            46899999999888888776           678899999998743

>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain

Probab=97.00  E-value=0.0024  Score=49.04  Aligned_cols=84  Identities=15%  Similarity=0.224  Sum_probs=48.7

Q ss_pred             CCCcHHHHHHHHHcccccccCCC-CeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChH------HHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDF-DCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSE------EKALEIF   70 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f-~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~------~~~~~l~   70 (180)
                      +|+|||+|++.++++..   .+| +.++++-+++.. ...++.+.+...=..+..   ......+..      ...-.+.
T Consensus        78 ~G~GKTtLa~~i~~~i~---~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~A  154 (274)
T cd01133          78 AGVGKTVLIMELINNIA---KAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALTGLTMA  154 (274)
T ss_pred             CCCChhHHHHHHHHHHH---hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence            69999999999999853   334 455566677655 455566665543111100   011111111      1223355


Q ss_pred             HHh--C-CCcEEEEEeCCCCc
Q 046006           71 RFL--S-KKKFVLLLDDKWER   88 (180)
Q Consensus        71 ~~L--~-~k~~LlVlDdv~~~   88 (180)
                      +++  + ++.+|+++||+-..
T Consensus       155 Eyfr~~~g~~Vl~~~Dsltr~  175 (274)
T cd01133         155 EYFRDEEGQDVLLFIDNIFRF  175 (274)
T ss_pred             HHHHHhcCCeEEEEEeChhHH
Confidence            555  3 88999999998654

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=96.98  E-value=0.0085  Score=48.52  Aligned_cols=32  Identities=16%  Similarity=0.196  Sum_probs=25.6

Q ss_pred             ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCC
Q 046006          105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGL  136 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~  136 (180)
                      ..+.+++.+.++-.++|..+          ....+++.+.|.
T Consensus       295 ~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~  336 (389)
T PRK03992        295 RIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGA  336 (389)
T ss_pred             eEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCC
Confidence            46889999999999999877          456777777664

>cd01394 radB RadB

Probab=96.95  E-value=0.0041  Score=46.03  Aligned_cols=82  Identities=13%  Similarity=0.031  Sum_probs=43.7

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHH----hCCCCCCCCCCcChHH---HHHHHHHHh
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKK----VGLLDGDSWKNKNSEE---KALEIFRFL   73 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~----l~~~~~~~~~~~~~~~---~~~~l~~~L   73 (180)
                      .+|+||||+|.+++....   ..-..++|++....+.  +-+.++...    +... -......+..+   ....+...+
T Consensus        27 ~~GsGKT~l~~~~a~~~~---~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  100 (218)
T cd01394          27 PPGTGKTNIAIQLAVETA---GQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASS-IIVFEPMDFNEQGRAIQETETFA  100 (218)
T ss_pred             CCCCCHHHHHHHHHHHHH---hcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcC-EEEEeCCCHHHHHHHHHHHHHHH
Confidence            389999999999987742   2233567776554443  333333322    1110 00011222223   233455555


Q ss_pred             CCCcEEEEEeCCCCc
Q 046006           74 SKKKFVLLLDDKWER   88 (180)
Q Consensus        74 ~~k~~LlVlDdv~~~   88 (180)
                      +.+.-++|+|.+...
T Consensus       101 ~~~~~lvvIDsi~~l  115 (218)
T cd01394         101 DEKVDLVVVDSATAL  115 (218)
T ss_pred             hcCCcEEEEechHHh
Confidence            555779999997543

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.0038  Score=49.34  Aligned_cols=63  Identities=21%  Similarity=0.184  Sum_probs=37.3

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC-CCcEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS-KKKFV   79 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~-~k~~L   79 (180)
                      +||.|||-||++++++-.        .-|+.+..        .++.+..-.         ....+.+.+.+.-+ +.+++
T Consensus       193 PPGTGKTLLAkAVA~~T~--------AtFIrvvg--------SElVqKYiG---------EGaRlVRelF~lArekaPsI  247 (406)
T COG1222         193 PPGTGKTLLAKAVANQTD--------ATFIRVVG--------SELVQKYIG---------EGARLVRELFELAREKAPSI  247 (406)
T ss_pred             CCCCcHHHHHHHHHhccC--------ceEEEecc--------HHHHHHHhc---------cchHHHHHHHHHHhhcCCeE
Confidence            589999999999999831        22333321        122222211         12234444444444 56899


Q ss_pred             EEEeCCCCc
Q 046006           80 LLLDDKWER   88 (180)
Q Consensus        80 lVlDdv~~~   88 (180)
                      +.+|.++..
T Consensus       248 IFiDEIDAI  256 (406)
T COG1222         248 IFIDEIDAI  256 (406)
T ss_pred             EEEechhhh
Confidence            999998864

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=96.91  E-value=0.012  Score=50.51  Aligned_cols=36  Identities=17%  Similarity=0.148  Sum_probs=29.6

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL  140 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal  140 (180)
                      ..+.+.+++.++..+.+.+.           ....|++.++|.+--+
T Consensus       171 ~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~A  217 (647)
T PRK07994        171 LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDA  217 (647)
T ss_pred             eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence            57899999999999888864           5678999999987633

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.88  E-value=0.01  Score=49.20  Aligned_cols=43  Identities=21%  Similarity=0.218  Sum_probs=32.2

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCC-ChHHHHHHHHHh
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVG-LPLALITIGRAI  147 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g-~PLal~~~~~~L  147 (180)
                      ..+++.+++.++-...+.+.           ....|++.++| ++.++..+-...
T Consensus       169 ~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~  223 (472)
T PRK14962        169 QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVW  223 (472)
T ss_pred             EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            57889999999988888775           57788887765 567776665533

>COG3899 Predicted ATPase [General function prediction only]

Probab=96.87  E-value=0.022  Score=50.67  Aligned_cols=45  Identities=20%  Similarity=0.231  Sum_probs=40.7

Q ss_pred             ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCChHHHHHHHHHhcC
Q 046006          105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLPLALITIGRAIAC  149 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~PLal~~~~~~L~~  149 (180)
                      ..+.|.||+..+...+....          ..+.|.++..|.|+-+..+-..|..
T Consensus       212 ~~I~L~PL~~~d~~~lV~~~l~~~~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~  266 (849)
T COG3899         212 TTITLAPLSRADTNQLVAATLGCTKLLPAPLLELIFEKTKGNPFFIEEFLKALYE  266 (849)
T ss_pred             eEEecCcCchhhHHHHHHHHhCCcccccchHHHHHHHHhcCCCccHHHHHHHHHh
Confidence            67899999999999998887          7899999999999999988888765

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.86  E-value=0.018  Score=47.94  Aligned_cols=36  Identities=14%  Similarity=0.155  Sum_probs=29.0

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL  140 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal  140 (180)
                      ..+++.+++.++-.+.+.+.           ....|++.++|.+-.+
T Consensus       168 ~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~a  214 (491)
T PRK14964        168 QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNA  214 (491)
T ss_pred             eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence            56888999999988888875           6778899999987543

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=96.85  E-value=0.0034  Score=44.71  Aligned_cols=85  Identities=18%  Similarity=0.131  Sum_probs=40.9

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCcChHHHH-HHHHHHhCCCcE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKA-LEIFRFLSKKKF   78 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-~~l~~~L~~k~~   78 (180)
                      ++|+||||+++.++..+..  ..+ .++.++... .....+.+...++..+.+-.......+..+.. +.+.....+..-
T Consensus         8 ~~G~GKTt~~~~la~~~~~--~g~-~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   84 (173)
T cd03115           8 LQGVGKTTTAAKLALYLKK--KGK-KVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREENFD   84 (173)
T ss_pred             CCCCCHHHHHHHHHHHHHH--CCC-cEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhCCCC
Confidence            5899999999999887531  222 233344332 22333344444444443201111223344433 334444444444


Q ss_pred             EEEEeCCCCc
Q 046006           79 VLLLDDKWER   88 (180)
Q Consensus        79 LlVlDdv~~~   88 (180)
                      ++|+|..-..
T Consensus        85 ~viiDt~g~~   94 (173)
T cd03115          85 VVIVDTAGRL   94 (173)
T ss_pred             EEEEECcccc
Confidence            5667775543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK07952 DNA replication protein DnaC; Validated

Probab=96.85  E-value=0.0037  Score=47.30  Aligned_cols=68  Identities=22%  Similarity=0.268  Sum_probs=39.2

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEEE
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVLL   81 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlV   81 (180)
                      +|+|||+||..+++.+.   ..-..++++      +..+++..+-......      ..+.+    .+.+.+. +.=+||
T Consensus       108 ~GtGKThLa~aia~~l~---~~g~~v~~i------t~~~l~~~l~~~~~~~------~~~~~----~~l~~l~-~~dlLv  167 (244)
T PRK07952        108 PGTGKNHLAAAICNELL---LRGKSVLII------TVADIMSAMKDTFSNS------ETSEE----QLLNDLS-NVDLLV  167 (244)
T ss_pred             CCCCHHHHHHHHHHHHH---hcCCeEEEE------EHHHHHHHHHHHHhhc------cccHH----HHHHHhc-cCCEEE
Confidence            79999999999999863   222344555      3445555544433211      11222    2333454 345888


Q ss_pred             EeCCCCcc
Q 046006           82 LDDKWERV   89 (180)
Q Consensus        82 lDdv~~~~   89 (180)
                      +||+....
T Consensus       168 IDDig~~~  175 (244)
T PRK07952        168 IDEIGVQT  175 (244)
T ss_pred             EeCCCCCC
Confidence            99996653

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=96.84  E-value=0.012  Score=50.72  Aligned_cols=37  Identities=11%  Similarity=0.142  Sum_probs=29.2

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALI  141 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~  141 (180)
                      ..+.+++++.++..+.+.+.           ....|++.++|.+.-+.
T Consensus       171 ~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAl  218 (709)
T PRK08691        171 LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDAL  218 (709)
T ss_pred             hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHH
Confidence            45678899999998888766           57899999999885443

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=96.83  E-value=0.013  Score=40.59  Aligned_cols=33  Identities=24%  Similarity=0.361  Sum_probs=23.7

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL   36 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~   36 (180)
                      .+|+|||+++..++....   ..-..++|++.....
T Consensus         7 ~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~e~~~   39 (165)
T cd01120           7 PTGSGKTTLALQLALNIA---TKGGKVVYVDIEEEI   39 (165)
T ss_pred             CCCCCHHHHHHHHHHHHH---hcCCEEEEEECCcch
Confidence            379999999999988853   233456777765544

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.80  E-value=0.017  Score=48.62  Aligned_cols=34  Identities=15%  Similarity=0.101  Sum_probs=26.9

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPL  138 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PL  138 (180)
                      ..+++++++.++..+.+.+.           ....|++.++|.+-
T Consensus       171 ~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr  215 (527)
T PRK14969        171 LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMR  215 (527)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence            46788899999888777664           56788899999775

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=96.77  E-value=0.0041  Score=47.37  Aligned_cols=66  Identities=26%  Similarity=0.305  Sum_probs=39.8

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEEE
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVLL   81 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlV   81 (180)
                      +|+|||.||.++.+...  +..+. +.++      +..+++.++.......           .....+.+.+. +-=|||
T Consensus       114 ~G~GKThLa~Ai~~~l~--~~g~s-v~f~------~~~el~~~Lk~~~~~~-----------~~~~~l~~~l~-~~dlLI  172 (254)
T COG1484         114 PGVGKTHLAIAIGNELL--KAGIS-VLFI------TAPDLLSKLKAAFDEG-----------RLEEKLLRELK-KVDLLI  172 (254)
T ss_pred             CCCcHHHHHHHHHHHHH--HcCCe-EEEE------EHHHHHHHHHHHHhcC-----------chHHHHHHHhh-cCCEEE
Confidence            79999999999999963  33333 4444      5556777776655321           11122222222 233899


Q ss_pred             EeCCCCc
Q 046006           82 LDDKWER   88 (180)
Q Consensus        82 lDdv~~~   88 (180)
                      |||+-..
T Consensus       173 iDDlG~~  179 (254)
T COG1484         173 IDDIGYE  179 (254)
T ss_pred             EecccCc
Confidence            9998664

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=96.76  E-value=0.016  Score=46.50  Aligned_cols=78  Identities=13%  Similarity=0.096  Sum_probs=50.6

Q ss_pred             HHHHHHHhC-----CCcEEEEEeCCCCcccc---------cc--c-----------cccccc-ccccceEeecCCChhhh
Q 046006           66 ALEIFRFLS-----KKKFVLLLDDKWERVDL---------NK--G-----------LFVCGL-VEANKNFKVECLSDNDA  117 (180)
Q Consensus        66 ~~~l~~~L~-----~k~~LlVlDdv~~~~~l---------~~--g-----------~~~~~~-~~~~~~~~l~~L~~~~a  117 (180)
                      ++.+.+.+.     +++-++|+||++..+.-         +.  +           ..+... .+....+.+.+++.++.
T Consensus       126 iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i  205 (365)
T PRK07471        126 VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDV  205 (365)
T ss_pred             HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHH
Confidence            445555553     56779999999876421         11  1           111111 12235789999999999


Q ss_pred             HHHHHHH-------HHHHHHHHcCCChHHHHHH
Q 046006          118 WELLRQK-------LAQTVAKKCVGLPLALITI  143 (180)
Q Consensus       118 ~~Lf~~~-------~~~~i~~~c~g~PLal~~~  143 (180)
                      .+++.+.       ....++..++|.|+....+
T Consensus       206 ~~~L~~~~~~~~~~~~~~l~~~s~Gsp~~Al~l  238 (365)
T PRK07471        206 IDALAAAGPDLPDDPRAALAALAEGSVGRALRL  238 (365)
T ss_pred             HHHHHHhcccCCHHHHHHHHHHcCCCHHHHHHH
Confidence            9999987       2257899999999855433

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.74  E-value=0.019  Score=49.14  Aligned_cols=38  Identities=16%  Similarity=0.186  Sum_probs=30.2

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALIT  142 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~  142 (180)
                      ..+++++++.++..+.+.+.           ....|++.++|.+--+..
T Consensus       176 ~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~  224 (618)
T PRK14951        176 LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALS  224 (618)
T ss_pred             eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence            57899999999998888765           578889999997754433

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=96.74  E-value=0.023  Score=46.18  Aligned_cols=33  Identities=0%  Similarity=-0.009  Sum_probs=24.2

Q ss_pred             ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006          105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP  137 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P  137 (180)
                      ..+.++..+.++..++|..+          ...++++.+.|+-
T Consensus       309 ~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~s  351 (398)
T PTZ00454        309 RKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKIS  351 (398)
T ss_pred             EEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCC
Confidence            45788888888888888766          4567777776653

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=96.73  E-value=0.034  Score=45.59  Aligned_cols=119  Identities=16%  Similarity=0.127  Sum_probs=73.2

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCC--CcEE
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSK--KKFV   79 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~--k~~L   79 (180)
                      +|.|||.+...++.+...-... -.++.++.-+-....+++..|+..+... .  .......+..+.+.++...  +.+|
T Consensus       184 PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~~~~~q~-~--~s~~~~~~~~~~~~~h~~q~k~~~l  259 (529)
T KOG2227|consen  184 PGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIFSSLLQD-L--VSPGTGMQHLEKFEKHTKQSKFMLL  259 (529)
T ss_pred             CCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHHHHHHHH-h--cCCchhHHHHHHHHHHHhcccceEE
Confidence            7999999999999886321122 2346666555456667777777666211 0  0111225666777777753  3799


Q ss_pred             EEEeCCCCcc-----------cccc---------c--------ccccccccc-----cceEeecCCChhhhHHHHHHH
Q 046006           80 LLLDDKWERV-----------DLNK---------G--------LFVCGLVEA-----NKNFKVECLSDNDAWELLRQK  124 (180)
Q Consensus        80 lVlDdv~~~~-----------~l~~---------g--------~~~~~~~~~-----~~~~~l~~L~~~~a~~Lf~~~  124 (180)
                      +|+|+.+...           +|..         |        .+.......     -..+..+|.+.++-.++|..+
T Consensus       260 lVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~r  337 (529)
T KOG2227|consen  260 LVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQR  337 (529)
T ss_pred             EEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHH
Confidence            9999988642           2222         2        111111111     256788899999999999998

>PRK05541 adenylylsulfate kinase; Provisional

Probab=96.69  E-value=0.0029  Score=45.25  Aligned_cols=27  Identities=26%  Similarity=0.578  Sum_probs=20.7

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWI   30 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv   30 (180)
                      ++|+||||+|+.++..+.   ..+...+++
T Consensus        15 ~~GsGKst~a~~l~~~l~---~~~~~~~~~   41 (176)
T PRK05541         15 LAGSGKTTIAKALYERLK---LKYSNVIYL   41 (176)
T ss_pred             CCCCCHHHHHHHHHHHHH---HcCCcEEEE
Confidence            579999999999998863   445555555

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=96.67  E-value=0.005  Score=49.54  Aligned_cols=76  Identities=22%  Similarity=0.327  Sum_probs=46.9

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CCCcChHHHHHHHHHHhCCCcE
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDS---WKNKNSEEKALEIFRFLSKKKF   78 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~l~~~L~~k~~   78 (180)
                      ||+|||||..+++.++.   ..- .+++|+-.++.....   --++.|+.+ ...   ....+.++..+.+.+   .++-
T Consensus       102 PGIGKSTLLLQva~~lA---~~~-~vLYVsGEES~~Qik---lRA~RL~~~-~~~l~l~aEt~~e~I~~~l~~---~~p~  170 (456)
T COG1066         102 PGIGKSTLLLQVAARLA---KRG-KVLYVSGEESLQQIK---LRADRLGLP-TNNLYLLAETNLEDIIAELEQ---EKPD  170 (456)
T ss_pred             CCCCHHHHHHHHHHHHH---hcC-cEEEEeCCcCHHHHH---HHHHHhCCC-ccceEEehhcCHHHHHHHHHh---cCCC
Confidence            79999999999999974   222 577776554433322   234555543 111   223445544444443   6889


Q ss_pred             EEEEeCCCCc
Q 046006           79 VLLLDDKWER   88 (180)
Q Consensus        79 LlVlDdv~~~   88 (180)
                      |+|+|-++..
T Consensus       171 lvVIDSIQT~  180 (456)
T COG1066         171 LVVIDSIQTL  180 (456)
T ss_pred             EEEEecccee
Confidence            9999998764

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=96.65  E-value=0.023  Score=47.49  Aligned_cols=38  Identities=18%  Similarity=0.212  Sum_probs=26.5

Q ss_pred             ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCC-hHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGL-PLALIT  142 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~-PLal~~  142 (180)
                      ..+.++..+.++-.++|..+          ....+++.+.|. +-.|..
T Consensus       218 ~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~  266 (495)
T TIGR01241       218 RQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLAN  266 (495)
T ss_pred             EEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHH
Confidence            46778888888888888876          456778887763 444433

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=96.65  E-value=0.033  Score=49.26  Aligned_cols=36  Identities=8%  Similarity=0.024  Sum_probs=28.3

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL  140 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal  140 (180)
                      ..|++..++.++-.+.+.+.           ....|++.++|.+..+
T Consensus       172 ~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~A  218 (824)
T PRK07764        172 HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDS  218 (824)
T ss_pred             eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence            57889999999988877764           4677899999987433

>PRK04296 thymidine kinase; Provisional

Probab=96.65  E-value=0.0021  Score=46.77  Aligned_cols=79  Identities=15%  Similarity=0.021  Sum_probs=43.0

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEEE
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVLL   81 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlV   81 (180)
                      +|.||||+|..++.+..   .+-..++.+.  ..++.......+++.++.. .........++....+.+ ..++.-++|
T Consensus        11 ~GsGKTT~~l~~~~~~~---~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~-~~~~~~~~~~~~~~~~~~-~~~~~dvvi   83 (190)
T PRK04296         11 MNSGKSTELLQRAYNYE---ERGMKVLVFK--PAIDDRYGEGKVVSRIGLS-REAIPVSSDTDIFELIEE-EGEKIDCVL   83 (190)
T ss_pred             CCCHHHHHHHHHHHHHH---HcCCeEEEEe--ccccccccCCcEecCCCCc-ccceEeCChHHHHHHHHh-hCCCCCEEE
Confidence            59999999999988853   2222333332  1112222233455555543 111122345555656655 334556899


Q ss_pred             EeCCCC
Q 046006           82 LDDKWE   87 (180)
Q Consensus        82 lDdv~~   87 (180)
                      +|.+..
T Consensus        84 IDEaq~   89 (190)
T PRK04296         84 IDEAQF   89 (190)
T ss_pred             EEcccc
Confidence            999864

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=96.65  E-value=0.0046  Score=48.67  Aligned_cols=80  Identities=18%  Similarity=0.029  Sum_probs=49.6

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC--CCCCCcChHHHHHHHHHHhC-CCc
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDG--DSWKNKNSEEKALEIFRFLS-KKK   77 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~-~k~   77 (180)
                      ++|+||||||.+++....   ..-..++|++....++..     .++.++.+..  ....+.+.++....+...++ +..
T Consensus        63 p~GsGKTtLal~~~~~~~---~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~  134 (325)
T cd00983          63 PESSGKTTLALHAIAEAQ---KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAV  134 (325)
T ss_pred             CCCCCHHHHHHHHHHHHH---HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCC
Confidence            479999999999887642   233457788766655542     3444443210  01123456666666666554 457


Q ss_pred             EEEEEeCCCCc
Q 046006           78 FVLLLDDKWER   88 (180)
Q Consensus        78 ~LlVlDdv~~~   88 (180)
                      -++|+|.|...
T Consensus       135 ~lIVIDSvaal  145 (325)
T cd00983         135 DLIVVDSVAAL  145 (325)
T ss_pred             CEEEEcchHhh
Confidence            79999998643

RecA couples ATP hydrolysis to DNA strand exchange.

>TIGR02012 tigrfam_recA protein RecA

Probab=96.65  E-value=0.0051  Score=48.38  Aligned_cols=80  Identities=15%  Similarity=0.041  Sum_probs=49.2

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC--CCCCCcChHHHHHHHHHHhC-CCc
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDG--DSWKNKNSEEKALEIFRFLS-KKK   77 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~-~k~   77 (180)
                      .+|+||||||.+++....   ..-..++|++....++..     .++.++.+..  ....+.+.++....+...++ +..
T Consensus        63 ~~GsGKTtLaL~~~~~~~---~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~  134 (321)
T TIGR02012        63 PESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAV  134 (321)
T ss_pred             CCCCCHHHHHHHHHHHHH---HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCC
Confidence            479999999999887742   223456788666554442     3455554310  01123455666666665554 567


Q ss_pred             EEEEEeCCCCc
Q 046006           78 FVLLLDDKWER   88 (180)
Q Consensus        78 ~LlVlDdv~~~   88 (180)
                      -++|+|.|...
T Consensus       135 ~lIVIDSv~al  145 (321)
T TIGR02012       135 DIIVVDSVAAL  145 (321)
T ss_pred             cEEEEcchhhh
Confidence            79999998754

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>TIGR00959 ffh signal recognition particle protein

Probab=96.61  E-value=0.009  Score=48.87  Aligned_cols=17  Identities=29%  Similarity=0.391  Sum_probs=14.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+||||.|..++..+
T Consensus       107 ~~GsGKTTtaakLA~~l  123 (428)
T TIGR00959       107 LQGSGKTTTCGKLAYYL  123 (428)
T ss_pred             CCCCcHHHHHHHHHHHH
Confidence            47999999988888764

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK09354 recA recombinase A; Provisional

Probab=96.59  E-value=0.0064  Score=48.33  Aligned_cols=80  Identities=16%  Similarity=0.035  Sum_probs=50.6

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC--CCCCCcChHHHHHHHHHHhC-CCc
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDG--DSWKNKNSEEKALEIFRFLS-KKK   77 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~-~k~   77 (180)
                      .+|+||||||.+++....   ..-..++|+.....++..     .++.++.+..  ....+.+.++....+...++ +..
T Consensus        68 ~~GsGKTtLal~~~~~~~---~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~  139 (349)
T PRK09354         68 PESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAV  139 (349)
T ss_pred             CCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCC
Confidence            479999999999887732   233567888776666642     3455554310  01123456666666666554 457


Q ss_pred             EEEEEeCCCCc
Q 046006           78 FVLLLDDKWER   88 (180)
Q Consensus        78 ~LlVlDdv~~~   88 (180)
                      -++|+|-|...
T Consensus       140 ~lIVIDSvaaL  150 (349)
T PRK09354        140 DLIVVDSVAAL  150 (349)
T ss_pred             CEEEEeChhhh
Confidence            79999998754

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=96.58  E-value=0.059  Score=42.79  Aligned_cols=40  Identities=15%  Similarity=0.184  Sum_probs=31.0

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIG  144 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~  144 (180)
                      ..+++.++++++..+.+...           .+..+++.++|.|..+....
T Consensus       169 ~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~l  219 (355)
T TIGR02397       169 QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLL  219 (355)
T ss_pred             eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHH
Confidence            46788899999988888764           67788999999887654443

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.53  E-value=0.037  Score=46.44  Aligned_cols=37  Identities=11%  Similarity=0.037  Sum_probs=27.4

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALI  141 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~  141 (180)
                      ..+++++++.++-.+.+.+.           ....|++.++|.+.-+.
T Consensus       171 ~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al  218 (509)
T PRK14958        171 LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDAL  218 (509)
T ss_pred             hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHH
Confidence            46788899998877765554           56788999999875443

>PRK06526 transposase; Provisional

Probab=96.52  E-value=0.006  Score=46.49  Aligned_cols=17  Identities=29%  Similarity=0.319  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||+||..+.+..
T Consensus       106 p~GtGKThLa~al~~~a  122 (254)
T PRK06526        106 PPGTGKTHLAIGLGIRA  122 (254)
T ss_pred             CCCCchHHHHHHHHHHH
Confidence            48999999999998874

>PRK08939 primosomal protein DnaI; Reviewed

Probab=96.50  E-value=0.0095  Score=46.65  Aligned_cols=65  Identities=23%  Similarity=0.266  Sum_probs=39.0

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEEE
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVLL   81 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlV   81 (180)
                      +|+|||.||..+++.+.  ...+. +.++++      .+++..+-.....        .+..+.    .+.+. +.=|||
T Consensus       165 ~G~GKThLa~Aia~~l~--~~g~~-v~~~~~------~~l~~~lk~~~~~--------~~~~~~----l~~l~-~~dlLi  222 (306)
T PRK08939        165 FGVGKSYLLAAIANELA--KKGVS-STLLHF------PEFIRELKNSISD--------GSVKEK----IDAVK-EAPVLM  222 (306)
T ss_pred             CCCCHHHHHHHHHHHHH--HcCCC-EEEEEH------HHHHHHHHHHHhc--------CcHHHH----HHHhc-CCCEEE
Confidence            69999999999999963  33343 445543      3566666555421        122222    22232 455899


Q ss_pred             EeCCCCc
Q 046006           82 LDDKWER   88 (180)
Q Consensus        82 lDdv~~~   88 (180)
                      |||+-..
T Consensus       223 IDDiG~e  229 (306)
T PRK08939        223 LDDIGAE  229 (306)
T ss_pred             EecCCCc
Confidence            9998644

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=96.50  E-value=0.036  Score=47.19  Aligned_cols=41  Identities=17%  Similarity=0.265  Sum_probs=30.9

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChH-HHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPL-ALITIGR  145 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PL-al~~~~~  145 (180)
                      ..+++.++++++....+...           .+..+++.++|.+- |+..+-.
T Consensus       171 q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLek  223 (605)
T PRK05896        171 QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQ  223 (605)
T ss_pred             hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            57889999999998888864           67788999999664 4444443

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=96.50  E-value=0.0089  Score=43.17  Aligned_cols=86  Identities=16%  Similarity=0.120  Sum_probs=42.9

Q ss_pred             CCCCcHHHHHHHHHcccccccCCC-------CeEEEEEeCCCCCHHHHHHHHHHHhCCCC-------------------C
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDF-------DCVIWIVVSKDLQLEKIQEIVGKKVGLLD-------------------G   54 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f-------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------------------~   54 (180)
                      .+|+|||+++.+++.....-...|       ..++|++...+  ..++.+.+........                   .
T Consensus        40 ~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (193)
T PF13481_consen   40 PPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLRALLQDYDDDANLFFVDLSNWGCIRLFE  117 (193)
T ss_dssp             CSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE---T
T ss_pred             CCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHHHHhcccCCccceEEeeccccccceeee
Confidence            479999999999988754211222       35677776554  3333333332221100                   0


Q ss_pred             CCCCCcChHHHHHHHHHHhCC--CcEEEEEeCCCCc
Q 046006           55 DSWKNKNSEEKALEIFRFLSK--KKFVLLLDDKWER   88 (180)
Q Consensus        55 ~~~~~~~~~~~~~~l~~~L~~--k~~LlVlDdv~~~   88 (180)
                      ............+.+.+.+..  +.-++|+|++...
T Consensus       118 ~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~  153 (193)
T PF13481_consen  118 PDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSL  153 (193)
T ss_dssp             TS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG
T ss_pred             cccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHH
Confidence            000111134556667777654  5779999998654

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.49  E-value=0.02  Score=43.65  Aligned_cols=85  Identities=19%  Similarity=0.108  Sum_probs=52.2

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-----CCCHHHHHHHHHHHhCCCC---CCCCCCcChHHHH-HHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-----DLQLEKIQEIVGKKVGLLD---GDSWKNKNSEEKA-LEIFRF   72 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~~-~~l~~~   72 (180)
                      +|+|||||++.+..-.    ..-.+.++..-..     .....+...++++.++.+.   ..-+..-+..+.+ -.+.+.
T Consensus        48 SG~GKSTlgr~i~~L~----~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARA  123 (268)
T COG4608          48 SGCGKSTLGRLILGLE----EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARA  123 (268)
T ss_pred             CCCCHHHHHHHHHcCc----CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHH
Confidence            7999999999998874    3445566554221     2234455667777776541   0111122333333 346677


Q ss_pred             hCCCcEEEEEeCCCCccc
Q 046006           73 LSKKKFVLLLDDKWERVD   90 (180)
Q Consensus        73 L~~k~~LlVlDdv~~~~~   90 (180)
                      |.-++-++|.|+.-+.-+
T Consensus       124 Lal~P~liV~DEpvSaLD  141 (268)
T COG4608         124 LALNPKLIVADEPVSALD  141 (268)
T ss_pred             HhhCCcEEEecCchhhcc
Confidence            788999999999776543

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=96.48  E-value=0.0015  Score=43.52  Aligned_cols=17  Identities=29%  Similarity=0.526  Sum_probs=15.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+++.+
T Consensus         7 ~~gsGKST~a~~La~~~   23 (121)
T PF13207_consen    7 PPGSGKSTLAKELAERL   23 (121)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            58999999999999984

...

>CHL00176 ftsH cell division protein; Validated

Probab=96.47  E-value=0.065  Score=46.20  Aligned_cols=31  Identities=13%  Similarity=0.301  Sum_probs=23.4

Q ss_pred             ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCC
Q 046006          105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVG  135 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g  135 (180)
                      ..+.++..+.++-.++|+.+          ....+++.+.|
T Consensus       346 ~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G  386 (638)
T CHL00176        346 RQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPG  386 (638)
T ss_pred             eEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCC
Confidence            46778888888888888876          45667777776

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.46  E-value=0.0074  Score=44.17  Aligned_cols=83  Identities=18%  Similarity=0.128  Sum_probs=47.0

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC-CCcE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS-KKKF   78 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~-~k~~   78 (180)
                      +.|+||||.+.+++..+. .+  -..+..++... .....+-++..++.++.+-.......+..+......+.++ ++.=
T Consensus         9 ptGvGKTTt~aKLAa~~~-~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~~~D   85 (196)
T PF00448_consen    9 PTGVGKTTTIAKLAARLK-LK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKKGYD   85 (196)
T ss_dssp             STTSSHHHHHHHHHHHHH-HT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHTTSS
T ss_pred             CCCCchHhHHHHHHHHHh-hc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhcCCC
Confidence            479999999888888753 22  34567777654 4466777888888887651111122234444433333333 3334


Q ss_pred             EEEEeCCC
Q 046006           79 VLLLDDKW   86 (180)
Q Consensus        79 LlVlDdv~   86 (180)
                      ++++|=.-
T Consensus        86 ~vlIDT~G   93 (196)
T PF00448_consen   86 LVLIDTAG   93 (196)
T ss_dssp             EEEEEE-S
T ss_pred             EEEEecCC
Confidence            66677653

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=96.45  E-value=0.0047  Score=44.49  Aligned_cols=66  Identities=24%  Similarity=0.318  Sum_probs=36.0

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL   80 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll   80 (180)
                      .+|+|||.||..+++..  ....+. +.|++      ..+++..+-..-        ...+.++.    .+.+. +.=||
T Consensus        55 ~~G~GKThLa~ai~~~~--~~~g~~-v~f~~------~~~L~~~l~~~~--------~~~~~~~~----~~~l~-~~dlL  112 (178)
T PF01695_consen   55 PPGTGKTHLAVAIANEA--IRKGYS-VLFIT------ASDLLDELKQSR--------SDGSYEEL----LKRLK-RVDLL  112 (178)
T ss_dssp             STTSSHHHHHHHHHHHH--HHTT---EEEEE------HHHHHHHHHCCH--------CCTTHCHH----HHHHH-TSSCE
T ss_pred             hHhHHHHHHHHHHHHHh--ccCCcc-eeEee------cCceeccccccc--------cccchhhh----cCccc-cccEe
Confidence            37999999999999884  233333 45553      445555543211        11122222    22333 33588


Q ss_pred             EEeCCCCc
Q 046006           81 LLDDKWER   88 (180)
Q Consensus        81 VlDdv~~~   88 (180)
                      ||||+-..
T Consensus       113 ilDDlG~~  120 (178)
T PF01695_consen  113 ILDDLGYE  120 (178)
T ss_dssp             EEETCTSS
T ss_pred             ccccccee
Confidence            89998644

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51

Probab=96.45  E-value=0.0089  Score=45.60  Aligned_cols=86  Identities=19%  Similarity=0.193  Sum_probs=49.2

Q ss_pred             CCCCcHHHHHHHHHccccccc----CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCCcChHHHH---H
Q 046006            1 MGGVGKTTLLTHINNKFLVSS----TDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD------SWKNKNSEEKA---L   67 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~---~   67 (180)
                      .+|+|||+||.+++-.. ...    ..-..++|++-...++...+. +|++..+.....      .....+.+++.   .
T Consensus        46 ~~gsGKTql~l~l~~~~-~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~~L~  123 (256)
T PF08423_consen   46 ESGSGKTQLCLQLAVNV-QLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLEELLELLE  123 (256)
T ss_dssp             STTSSHHHHHHHHHHHT-TSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHHHHHHHHH
T ss_pred             ecccccchHHHHHHHHh-hcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHHHHHHHHH
Confidence            37999999999886442 111    122468999988888887765 466655432000      01122344443   3


Q ss_pred             HHHHHh-CCCcEEEEEeCCCCc
Q 046006           68 EIFRFL-SKKKFVLLLDDKWER   88 (180)
Q Consensus        68 ~l~~~L-~~k~~LlVlDdv~~~   88 (180)
                      .+...+ .++--|||+|.+-..
T Consensus       124 ~l~~~l~~~~ikLIVIDSIaal  145 (256)
T PF08423_consen  124 QLPKLLSESKIKLIVIDSIAAL  145 (256)
T ss_dssp             HHHHHHHHSCEEEEEEETSSHH
T ss_pred             HHHhhccccceEEEEecchHHH
Confidence            333333 356679999998543

It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.45  E-value=0.0082  Score=50.67  Aligned_cols=64  Identities=16%  Similarity=0.131  Sum_probs=39.9

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL   80 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll   80 (180)
                      +||+|||.||+.+++++.        +=|+.++-+        +|...        ....+.+...+...+.-..-++++
T Consensus       231 PPGCGKT~lA~AiAgel~--------vPf~~isAp--------eivSG--------vSGESEkkiRelF~~A~~~aPciv  286 (802)
T KOG0733|consen  231 PPGCGKTSLANAIAGELG--------VPFLSISAP--------EIVSG--------VSGESEKKIRELFDQAKSNAPCIV  286 (802)
T ss_pred             CCCccHHHHHHHHhhhcC--------CceEeecch--------hhhcc--------cCcccHHHHHHHHHHHhccCCeEE
Confidence            589999999999999963        223333311        12122        223344444444445556789999


Q ss_pred             EEeCCCCc
Q 046006           81 LLDDKWER   88 (180)
Q Consensus        81 VlDdv~~~   88 (180)
                      .+|+++..
T Consensus       287 FiDeIDAI  294 (802)
T KOG0733|consen  287 FIDEIDAI  294 (802)
T ss_pred             Eeeccccc
Confidence            99999865

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.41  E-value=0.015  Score=47.67  Aligned_cols=82  Identities=21%  Similarity=0.169  Sum_probs=42.1

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV   79 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L   79 (180)
                      .+|+||||.|..++..+.  +..+ .+..++... .+...+.+..+++.++.+........+.........+.+.+. =+
T Consensus       103 ~~GsGKTTtaakLA~~L~--~~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~~~-Dv  178 (437)
T PRK00771        103 LQGSGKTTTAAKLARYFK--KKGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFKKA-DV  178 (437)
T ss_pred             CCCCcHHHHHHHHHHHHH--HcCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhhcC-CE
Confidence            479999999999998763  2223 333444332 223345566667776654111111223333333333333333 45


Q ss_pred             EEEeCCC
Q 046006           80 LLLDDKW   86 (180)
Q Consensus        80 lVlDdv~   86 (180)
                      +|+|..-
T Consensus       179 VIIDTAG  185 (437)
T PRK00771        179 IIVDTAG  185 (437)
T ss_pred             EEEECCC
Confidence            6777663

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=96.38  E-value=0.0088  Score=49.08  Aligned_cols=34  Identities=3%  Similarity=0.017  Sum_probs=25.8

Q ss_pred             cceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006          104 NKNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP  137 (180)
Q Consensus       104 ~~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P  137 (180)
                      +..+.++..+.++..++|..+          ....++..+.|+-
T Consensus       346 d~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~s  389 (438)
T PTZ00361        346 DRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELS  389 (438)
T ss_pred             EEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCC
Confidence            357888999999999999877          3567777776653

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.035  Score=46.34  Aligned_cols=66  Identities=24%  Similarity=0.255  Sum_probs=38.9

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh----CCC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL----SKK   76 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L----~~k   76 (180)
                      ++|+|||+||..++..     ..|..+--++      +++                .-..+.......+++..    +..
T Consensus       546 p~~sGKTaLAA~iA~~-----S~FPFvKiiS------pe~----------------miG~sEsaKc~~i~k~F~DAYkS~  598 (744)
T KOG0741|consen  546 PPGSGKTALAAKIALS-----SDFPFVKIIS------PED----------------MIGLSESAKCAHIKKIFEDAYKSP  598 (744)
T ss_pred             CCCCChHHHHHHHHhh-----cCCCeEEEeC------hHH----------------ccCccHHHHHHHHHHHHHHhhcCc
Confidence            4799999999999987     5676443332      111                11122333333444433    456


Q ss_pred             cEEEEEeCCCCcccccc
Q 046006           77 KFVLLLDDKWERVDLNK   93 (180)
Q Consensus        77 ~~LlVlDdv~~~~~l~~   93 (180)
                      -..+|+||+...-++-.
T Consensus       599 lsiivvDdiErLiD~vp  615 (744)
T KOG0741|consen  599 LSIIVVDDIERLLDYVP  615 (744)
T ss_pred             ceEEEEcchhhhhcccc
Confidence            67888888877655444

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=96.37  E-value=0.014  Score=43.84  Aligned_cols=81  Identities=10%  Similarity=0.043  Sum_probs=47.3

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---------------C---------C-
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLD---------------G---------D-   55 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------------~---------~-   55 (180)
                      .+|+|||+||.++.....   ..-..++|++...  +..++.+.+. .++.+.               .         . 
T Consensus        29 ~pGsGKT~la~~~l~~~~---~~ge~~lyvs~ee--~~~~i~~~~~-~~g~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~  102 (237)
T TIGR03877        29 GPGTGKSIFSQQFLWNGL---QMGEPGIYVALEE--HPVQVRRNMA-QFGWDVRKYEEEGKFAIVDAFTGGIGEAAEREK  102 (237)
T ss_pred             CCCCCHHHHHHHHHHHHH---HcCCcEEEEEeeC--CHHHHHHHHH-HhCCCHHHHhhcCCEEEEecccccccccccccc
Confidence            389999999999876521   2345678887654  4445544432 232210               0         0 


Q ss_pred             --CCCCcChHHHHHHHHHHhCC-CcEEEEEeCCCC
Q 046006           56 --SWKNKNSEEKALEIFRFLSK-KKFVLLLDDKWE   87 (180)
Q Consensus        56 --~~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~~   87 (180)
                        .....+.++....+++.++. +.-++|+|.+..
T Consensus       103 ~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~  137 (237)
T TIGR03877       103 YVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTT  137 (237)
T ss_pred             ccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhH
Confidence              01224566677777776642 444799998754

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=96.35  E-value=0.012  Score=47.28  Aligned_cols=77  Identities=19%  Similarity=0.307  Sum_probs=44.2

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC---CCcChHHHHHHHHHHhCCCcE
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSW---KNKNSEEKALEIFRFLSKKKF   78 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~~~~l~~~L~~k~~   78 (180)
                      +|+|||||+.+++....   ..-..++|++...+  ..++. .-++.++.. ....   ...+.++..+.+.   ..+.-
T Consensus        91 pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~-~~~l~l~~e~~le~I~~~i~---~~~~~  160 (372)
T cd01121          91 PGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQIK-LRADRLGIS-TENLYLLAETNLEDILASIE---ELKPD  160 (372)
T ss_pred             CCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHHH-HHHHHcCCC-cccEEEEccCcHHHHHHHHH---hcCCc
Confidence            79999999999988753   22245777765433  33332 224455543 1111   2233444444332   34677


Q ss_pred             EEEEeCCCCc
Q 046006           79 VLLLDDKWER   88 (180)
Q Consensus        79 LlVlDdv~~~   88 (180)
                      ++|+|.+...
T Consensus       161 lVVIDSIq~l  170 (372)
T cd01121         161 LVIIDSIQTV  170 (372)
T ss_pred             EEEEcchHHh
Confidence            8999998643

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK08181 transposase; Validated

Probab=96.35  E-value=0.014  Score=44.83  Aligned_cols=66  Identities=20%  Similarity=0.158  Sum_probs=36.9

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL   80 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll   80 (180)
                      .+|+|||.||..+++...  ...+ .++|++      ..+++..+.....        ..+.+....    .+. +.=||
T Consensus       114 p~GtGKTHLa~Aia~~a~--~~g~-~v~f~~------~~~L~~~l~~a~~--------~~~~~~~l~----~l~-~~dLL  171 (269)
T PRK08181        114 PPGGGKSHLAAAIGLALI--ENGW-RVLFTR------TTDLVQKLQVARR--------ELQLESAIA----KLD-KFDLL  171 (269)
T ss_pred             cCCCcHHHHHHHHHHHHH--HcCC-ceeeee------HHHHHHHHHHHHh--------CCcHHHHHH----HHh-cCCEE
Confidence            479999999999998742  2222 345553      3455555533321        112222222    222 34599


Q ss_pred             EEeCCCCc
Q 046006           81 LLDDKWER   88 (180)
Q Consensus        81 VlDdv~~~   88 (180)
                      ||||+...
T Consensus       172 IIDDlg~~  179 (269)
T PRK08181        172 ILDDLAYV  179 (269)
T ss_pred             EEeccccc
Confidence            99998543

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=96.34  E-value=0.0036  Score=47.77  Aligned_cols=20  Identities=5%  Similarity=0.042  Sum_probs=16.3

Q ss_pred             ceEeecCCChhhhHHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK  124 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~  124 (180)
                      ..+.+++++.++-.+++.+.
T Consensus       171 ~~i~f~~~~~~el~~Il~~~  190 (261)
T TIGR02881       171 ISIDFPDYTVEELMEIAERM  190 (261)
T ss_pred             eEEEECCCCHHHHHHHHHHH
Confidence            46788999999988888765

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.34  E-value=0.047  Score=46.70  Aligned_cols=43  Identities=16%  Similarity=0.284  Sum_probs=33.1

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCCh-HHHHHHHHHh
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLP-LALITIGRAI  147 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~P-Lal~~~~~~L  147 (180)
                      ..+++++++.++..+.+.+.           .+..|++.++|.+ .|+..+...+
T Consensus       171 q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll  225 (624)
T PRK14959        171 QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVL  225 (624)
T ss_pred             hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            46789999999998888764           6788889999854 6777765444

>PRK10867 signal recognition particle protein; Provisional

Probab=96.34  E-value=0.016  Score=47.47  Aligned_cols=17  Identities=29%  Similarity=0.462  Sum_probs=14.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||.|..++..+
T Consensus       108 ~~GsGKTTtaakLA~~l  124 (433)
T PRK10867        108 LQGAGKTTTAGKLAKYL  124 (433)
T ss_pred             CCCCcHHHHHHHHHHHH
Confidence            47999999888888765

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=96.30  E-value=0.038  Score=43.96  Aligned_cols=87  Identities=11%  Similarity=0.172  Sum_probs=50.9

Q ss_pred             CCCCcHHHHHHHHHcccc--cccC-CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC------CCCcChHHHHHHHH-
Q 046006            1 MGGVGKTTLLTHINNKFL--VSST-DFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDS------WKNKNSEEKALEIF-   70 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~--~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~------~~~~~~~~~~~~l~-   70 (180)
                      .+|+|||+||..++-...  .... .-..++|++...+++.+++ .++++.++......      ....+.+.....+. 
T Consensus       131 ~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i~~~~~~~~e~~~~ll~~  209 (342)
T PLN03186        131 EFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENVAYARAYNTDHQSELLLE  209 (342)
T ss_pred             CCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccceEEEecCCHHHHHHHHHH
Confidence            379999999998875421  0011 1126899999888888776 45566665531100      11233444433332 


Q ss_pred             --HHh-CCCcEEEEEeCCCCc
Q 046006           71 --RFL-SKKKFVLLLDDKWER   88 (180)
Q Consensus        71 --~~L-~~k~~LlVlDdv~~~   88 (180)
                        ..+ ..+.-|+|+|-+...
T Consensus       210 ~~~~~~~~~~~LIVIDSI~al  230 (342)
T PLN03186        210 AASMMAETRFALMIVDSATAL  230 (342)
T ss_pred             HHHHhhccCCCEEEEeCcHHH
Confidence              233 356779999997543

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.29  E-value=0.045  Score=47.99  Aligned_cols=34  Identities=12%  Similarity=0.125  Sum_probs=25.9

Q ss_pred             cceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006          104 NKNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP  137 (180)
Q Consensus       104 ~~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P  137 (180)
                      +..+.++..+.++-.++|..+          ....+++.+.|.-
T Consensus       614 d~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~s  657 (733)
T TIGR01243       614 DRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYT  657 (733)
T ss_pred             ceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCC
Confidence            356778888888888888766          4678888888753

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.28  E-value=0.026  Score=45.87  Aligned_cols=37  Identities=14%  Similarity=0.133  Sum_probs=29.0

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALI  141 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~  141 (180)
                      ..+++.++++++..+.+...           .+..|++.++|.+--+.
T Consensus       179 ~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~  226 (397)
T PRK14955        179 QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQ  226 (397)
T ss_pred             HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence            46788999999988777764           68899999999775443

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=96.26  E-value=0.025  Score=42.31  Aligned_cols=80  Identities=16%  Similarity=0.178  Sum_probs=48.0

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----------------CCCCcChH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD-----------------SWKNKNSE   63 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----------------~~~~~~~~   63 (180)
                      .+|+|||+||.++....  . ..=..++|++..++  ..++.+++ ++++.....                 .....+.+
T Consensus        33 ~~GsGKt~l~~~~~~~~--~-~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~  106 (234)
T PRK06067         33 DHGTGKSVLSQQFVYGA--L-KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGFEWNSTLAN  106 (234)
T ss_pred             CCCCChHHHHHHHHHHH--H-hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccccccCcchHH
Confidence            37999999999997652  1 22346788887643  44555543 334322000                 01123346


Q ss_pred             HHHHHHHHHhCC-CcEEEEEeCCC
Q 046006           64 EKALEIFRFLSK-KKFVLLLDDKW   86 (180)
Q Consensus        64 ~~~~~l~~~L~~-k~~LlVlDdv~   86 (180)
                      ++...+.+.+.. +.-++|+|.+.
T Consensus       107 ~ll~~l~~~i~~~~~~~iviDs~t  130 (234)
T PRK06067        107 KLLELIIEFIKSKREDVIIIDSLT  130 (234)
T ss_pred             HHHHHHHHHHHhcCCCEEEEecHH
Confidence            677777777753 56689999975

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]

Probab=96.25  E-value=0.027  Score=43.48  Aligned_cols=82  Identities=18%  Similarity=0.105  Sum_probs=49.7

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHH-hCCCCCCCCCCcChHHH---HHHHHHHhCCC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKK-VGLLDGDSWKNKNSEEK---ALEIFRFLSKK   76 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~~---~~~l~~~L~~k   76 (180)
                      +.|+||||+|.+++-.-.   ..-..++|++.-..+++..+.. ++.. +..  -....+.+.++.   ++.+......+
T Consensus        68 ~~gsGKT~lal~~~~~aq---~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~--l~v~~~~~~e~q~~i~~~~~~~~~~~  141 (279)
T COG0468          68 PESSGKTTLALQLVANAQ---KPGGKAAFIDTEHALDPERAKQ-LGVDLLDN--LLVSQPDTGEQQLEIAEKLARSGAEK  141 (279)
T ss_pred             CCCcchhhHHHHHHHHhh---cCCCeEEEEeCCCCCCHHHHHH-HHHhhhcc--eeEecCCCHHHHHHHHHHHHHhccCC
Confidence            469999999999877632   3334789999888888777643 3333 211  111223334433   33333333445


Q ss_pred             cEEEEEeCCCCc
Q 046006           77 KFVLLLDDKWER   88 (180)
Q Consensus        77 ~~LlVlDdv~~~   88 (180)
                      --|+|+|.+-..
T Consensus       142 i~LvVVDSvaa~  153 (279)
T COG0468         142 IDLLVVDSVAAL  153 (279)
T ss_pred             CCEEEEecCccc
Confidence            679999998654

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=96.25  E-value=0.036  Score=43.58  Aligned_cols=87  Identities=14%  Similarity=0.093  Sum_probs=50.9

Q ss_pred             CCCCcHHHHHHHHHccccccc---CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCCcChHHHH---HH
Q 046006            1 MGGVGKTTLLTHINNKFLVSS---TDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD------SWKNKNSEEKA---LE   68 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~---~~   68 (180)
                      .+|+|||+||.+++-.....+   ..-..++|++....++.+++. ++++.++.....      .....+.++..   ..
T Consensus       104 ~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~e~~~~~l~~  182 (313)
T TIGR02238       104 EFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTSEHQMELLDY  182 (313)
T ss_pred             CCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCHHHHHHHHHH
Confidence            479999999998774311110   112468899988888888775 456666654110      01122334333   33


Q ss_pred             HHHHh-CCCcEEEEEeCCCCc
Q 046006           69 IFRFL-SKKKFVLLLDDKWER   88 (180)
Q Consensus        69 l~~~L-~~k~~LlVlDdv~~~   88 (180)
                      +...+ +++--|+|+|.+...
T Consensus       183 l~~~i~~~~~~LvVIDSisal  203 (313)
T TIGR02238       183 LAAKFSEEPFRLLIVDSIMAL  203 (313)
T ss_pred             HHHHhhccCCCEEEEEcchHh
Confidence            44344 345668999998543

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=96.24  E-value=0.036  Score=44.10  Aligned_cols=87  Identities=14%  Similarity=0.101  Sum_probs=51.0

Q ss_pred             CCCCcHHHHHHHHHccccc--ccC-CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCCcChHHHH---HH
Q 046006            1 MGGVGKTTLLTHINNKFLV--SST-DFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD------SWKNKNSEEKA---LE   68 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~--~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~---~~   68 (180)
                      .+|+|||+||.+++-....  ... .-..++|++...+++..++.. +++.++.+...      .....+.++..   ..
T Consensus       134 ~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~e~~~~~l~~  212 (344)
T PLN03187        134 EFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTYEHQYNLLLG  212 (344)
T ss_pred             CCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCHHHHHHHHHH
Confidence            3799999999998643111  011 124679999988888887654 56666554110      01223444433   33


Q ss_pred             HHHHh-CCCcEEEEEeCCCCc
Q 046006           69 IFRFL-SKKKFVLLLDDKWER   88 (180)
Q Consensus        69 l~~~L-~~k~~LlVlDdv~~~   88 (180)
                      +...+ ..+--|+|+|.+...
T Consensus       213 l~~~i~~~~~~LvVIDSital  233 (344)
T PLN03187        213 LAAKMAEEPFRLLIVDSVIAL  233 (344)
T ss_pred             HHHHHHhcCCCEEEEeCcHHh
Confidence            33334 345668999998543

>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.23  E-value=0.0061  Score=45.27  Aligned_cols=81  Identities=25%  Similarity=0.355  Sum_probs=46.8

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC---CCCCCCcChHH------HHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLD---GDSWKNKNSEE------KALEIFR   71 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~---~~~~~~~~~~~------~~~~l~~   71 (180)
                      +|+|||+|+..+.++.     .-+.++++-+++.. ...++.+++...-..+.   .......+...      ..-.+.+
T Consensus        24 ~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~a~t~AE   98 (215)
T PF00006_consen   24 AGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYTALTIAE   98 (215)
T ss_dssp             TTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHHHHHHHH
T ss_pred             cccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhccchhhhH
Confidence            6999999999999983     33556888887654 56666666644311110   00011111111      1122233


Q ss_pred             Hh--CCCcEEEEEeCCCC
Q 046006           72 FL--SKKKFVLLLDDKWE   87 (180)
Q Consensus        72 ~L--~~k~~LlVlDdv~~   87 (180)
                      ++  +++..|+++||+..
T Consensus        99 yfrd~G~dVlli~Dsltr  116 (215)
T PF00006_consen   99 YFRDQGKDVLLIIDSLTR  116 (215)
T ss_dssp             HHHHTTSEEEEEEETHHH
T ss_pred             HHhhcCCceeehhhhhHH
Confidence            33  68999999999754

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=96.22  E-value=0.0045  Score=49.49  Aligned_cols=17  Identities=24%  Similarity=0.200  Sum_probs=15.7

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||.+|+.+++.+
T Consensus       156 PPGcGKTllAraiA~el  172 (413)
T PLN00020        156 GKGQGKSFQCELVFKKM  172 (413)
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            48999999999999995

>PRK04132 replication factor C small subunit; Provisional

Probab=96.22  E-value=0.12  Score=45.86  Aligned_cols=120  Identities=13%  Similarity=0.049  Sum_probs=67.7

Q ss_pred             CCCCcHHHHHHHHHcccccccCCC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDF-DCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV   79 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L   79 (180)
                      +.++||||+|..+++++- - +.+ ...+-++.+...+...+ +++.+.+... . +..               ..+.-+
T Consensus       574 Ph~lGKTT~A~ala~~l~-g-~~~~~~~lElNASd~rgid~I-R~iIk~~a~~-~-~~~---------------~~~~KV  633 (846)
T PRK04132        574 PTVLHNTTAALALARELF-G-ENWRHNFLELNASDERGINVI-REKVKEFART-K-PIG---------------GASFKI  633 (846)
T ss_pred             CCcccHHHHHHHHHHhhh-c-ccccCeEEEEeCCCcccHHHH-HHHHHHHHhc-C-CcC---------------CCCCEE
Confidence            358999999999999852 1 222 23566777765555443 3443332111 0 000               113456


Q ss_pred             EEEeCCCCccc---------ccc--c-----------ccccc-cccccceEeecCCChhhhHHHHHHH-----------H
Q 046006           80 LLLDDKWERVD---------LNK--G-----------LFVCG-LVEANKNFKVECLSDNDAWELLRQK-----------L  125 (180)
Q Consensus        80 lVlDdv~~~~~---------l~~--g-----------~~~~~-~~~~~~~~~l~~L~~~~a~~Lf~~~-----------~  125 (180)
                      +|+|+++....         ++.  +           ..+.. -.+....+.+++++.++-.+.+...           .
T Consensus       634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~  713 (846)
T PRK04132        634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEG  713 (846)
T ss_pred             EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHH
Confidence            66777666531         110  0           11111 1112357889999998888777643           6


Q ss_pred             HHHHHHHcCCChHHH
Q 046006          126 AQTVAKKCVGLPLAL  140 (180)
Q Consensus       126 ~~~i~~~c~g~PLal  140 (180)
                      ...|++.|+|.+...
T Consensus       714 L~~Ia~~s~GDlR~A  728 (846)
T PRK04132        714 LQAILYIAEGDMRRA  728 (846)
T ss_pred             HHHHHHHcCCCHHHH
Confidence            788999999987433

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=96.20  E-value=0.17  Score=39.83  Aligned_cols=37  Identities=14%  Similarity=0.025  Sum_probs=29.2

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALI  141 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~  141 (180)
                      ..+++.+++.++..+.+.+.           ....+++.++|.+-.+.
T Consensus       177 ~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~  224 (337)
T PRK12402        177 LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAI  224 (337)
T ss_pred             eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence            46788999999988888775           67888999988765543

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=96.20  E-value=0.029  Score=43.87  Aligned_cols=86  Identities=15%  Similarity=0.114  Sum_probs=48.8

Q ss_pred             CCCCcHHHHHHHHHcccccccC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCCcChH---HHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSST----DFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD------SWKNKNSE---EKAL   67 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~---~~~~   67 (180)
                      .+|+|||++|.+++.... ...    .-..++||+....++...+. ++++.++.....      -....+.+   ....
T Consensus       103 ~~g~GKT~l~~~~~~~~~-~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~~~~~~~~i~i~~~~~~~~~~~lld  180 (310)
T TIGR02236       103 EFGSGKTQICHQLAVNVQ-LPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLDPDEVLKNIYVARAYNSNHQMLLVE  180 (310)
T ss_pred             CCCCCHHHHHHHHHHHhc-CCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhhceEEEecCCHHHHHHHHH
Confidence            379999999999986631 110    11368999988888877654 445555443100      00111111   2334


Q ss_pred             HHHHHhCC---CcEEEEEeCCCCc
Q 046006           68 EIFRFLSK---KKFVLLLDDKWER   88 (180)
Q Consensus        68 ~l~~~L~~---k~~LlVlDdv~~~   88 (180)
                      .+.+.+..   +.-++|+|.+...
T Consensus       181 ~l~~~i~~~~~~~~lVVIDSisa~  204 (310)
T TIGR02236       181 KAEDLIKELNNPVKLLIVDSLTSH  204 (310)
T ss_pred             HHHHHHHhcCCCceEEEEecchHh
Confidence            45555543   2459999997543

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>PRK09183 transposase/IS protein; Provisional

Probab=96.19  E-value=0.018  Score=44.03  Aligned_cols=17  Identities=35%  Similarity=0.434  Sum_probs=14.7

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||+||..+++..
T Consensus       110 p~GtGKThLa~al~~~a  126 (259)
T PRK09183        110 PSGVGKTHLAIALGYEA  126 (259)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            47999999999998773

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=96.14  E-value=0.13  Score=44.02  Aligned_cols=38  Identities=11%  Similarity=0.093  Sum_probs=30.8

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALIT  142 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~  142 (180)
                      ..+++.+++.++....+.+.           ....|++.++|.+.-+..
T Consensus       184 q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~  232 (598)
T PRK09111        184 QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLS  232 (598)
T ss_pred             eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence            57889999999998888875           677889999998865543

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=96.14  E-value=0.039  Score=43.38  Aligned_cols=86  Identities=15%  Similarity=0.158  Sum_probs=50.1

Q ss_pred             CCCCcHHHHHHHHHcccccccCC----CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC------CCCcCh---HHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTD----FDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDS------WKNKNS---EEKAL   67 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~------~~~~~~---~~~~~   67 (180)
                      .+|+|||++|.+++.... ....    =..++|++...+++...+. ++++.++......      ....+.   .....
T Consensus       110 ~~GsGKT~l~~~~~~~~~-~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~~~~~~l~~i~~~~~~~~~~~~~~~~  187 (317)
T PRK04301        110 EFGSGKTQICHQLAVNVQ-LPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGLDPDEVLDNIHVARAYNSDHQMLLAE  187 (317)
T ss_pred             CCCCCHhHHHHHHHHHhc-cccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCCChHhhhccEEEEeCCCHHHHHHHHH
Confidence            479999999999986631 1111    1478999988888877664 3445554321000      011111   23344


Q ss_pred             HHHHHhCC--CcEEEEEeCCCCc
Q 046006           68 EIFRFLSK--KKFVLLLDDKWER   88 (180)
Q Consensus        68 ~l~~~L~~--k~~LlVlDdv~~~   88 (180)
                      .+...+..  +--|+|+|-+...
T Consensus       188 ~l~~~i~~~~~~~lvVIDSisa~  210 (317)
T PRK04301        188 KAEELIKEGENIKLVIVDSLTAH  210 (317)
T ss_pred             HHHHHHhccCceeEEEEECchHH
Confidence            55555543  4559999998553

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.14  E-value=0.16  Score=40.74  Aligned_cols=36  Identities=19%  Similarity=0.135  Sum_probs=27.7

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL  140 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal  140 (180)
                      ..++..++++++....+...           ....+++.++|.+-.+
T Consensus       160 ~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~  206 (367)
T PRK14970        160 QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDA  206 (367)
T ss_pred             eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHH
Confidence            46889999999988877764           6778888898866533

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.13  E-value=0.033  Score=43.12  Aligned_cols=79  Identities=23%  Similarity=0.249  Sum_probs=41.0

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD-LQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV   79 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L   79 (180)
                      ++|+||||++..++..+. .+..-..+..++.... ....+.+....+.++.+ .  ....+..++...+.. +.+ .=+
T Consensus       202 ptGvGKTTt~~kLa~~~~-~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p-~--~~~~~~~~l~~~l~~-~~~-~d~  275 (282)
T TIGR03499       202 PTGVGKTTTLAKLAARFV-LEHGNKKVALITTDTYRIGAVEQLKTYAKILGVP-V--KVARDPKELRKALDR-LRD-KDL  275 (282)
T ss_pred             CCCCCHHHHHHHHHHHHH-HHcCCCeEEEEECCccchhHHHHHHHHHHHhCCc-e--eccCCHHHHHHHHHH-ccC-CCE
Confidence            479999999999988752 2211123455554432 22333444445555544 1  122344444444443 343 457


Q ss_pred             EEEeCC
Q 046006           80 LLLDDK   85 (180)
Q Consensus        80 lVlDdv   85 (180)
                      +++|..
T Consensus       276 vliDt~  281 (282)
T TIGR03499       276 ILIDTA  281 (282)
T ss_pred             EEEeCC
Confidence            777753

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=96.12  E-value=0.18  Score=43.34  Aligned_cols=82  Identities=10%  Similarity=0.008  Sum_probs=48.0

Q ss_pred             HHHHHHHHHhCCCcEEEEEeCCCCccc--c-------ccc---------------ccccccc-cccceEeecCCChhhhH
Q 046006           64 EKALEIFRFLSKKKFVLLLDDKWERVD--L-------NKG---------------LFVCGLV-EANKNFKVECLSDNDAW  118 (180)
Q Consensus        64 ~~~~~l~~~L~~k~~LlVlDdv~~~~~--l-------~~g---------------~~~~~~~-~~~~~~~l~~L~~~~a~  118 (180)
                      ..+..+.+.+++++++++-|+.|....  +       ..+               ..+.... +....+.+.+++.+|..
T Consensus       280 ~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~  359 (615)
T TIGR02903       280 LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIA  359 (615)
T ss_pred             HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHH
Confidence            356788888888998888776654321  0       110               0000000 11135678899999999


Q ss_pred             HHHHHH-----------HHHHHHHHcCCChHHHHHHHH
Q 046006          119 ELLRQK-----------LAQTVAKKCVGLPLALITIGR  145 (180)
Q Consensus       119 ~Lf~~~-----------~~~~i~~~c~g~PLal~~~~~  145 (180)
                      +++.+.           ....|.+.+..-+.++..++.
T Consensus       360 ~Il~~~a~~~~v~ls~eal~~L~~ys~~gRraln~L~~  397 (615)
T TIGR02903       360 LIVLNAAEKINVHLAAGVEELIARYTIEGRKAVNILAD  397 (615)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHCCCcHHHHHHHHHH
Confidence            998887           344444555444566665543

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=96.11  E-value=0.015  Score=47.67  Aligned_cols=82  Identities=18%  Similarity=0.206  Sum_probs=48.1

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChHH------HHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSEE------KALEIFR   71 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~------~~~~l~~   71 (180)
                      +|+|||||++.++...     ..+.++..-+++.. ...++...++..-+.+..   ......+...      ..-.+.+
T Consensus       171 sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A~tiAE  245 (444)
T PRK08972        171 SGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETATTIAE  245 (444)
T ss_pred             CCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            6999999999998762     33566777677655 445566665444222100   0111111111      1233445


Q ss_pred             Hh--CCCcEEEEEeCCCCc
Q 046006           72 FL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        72 ~L--~~k~~LlVlDdv~~~   88 (180)
                      ++  +++.+|+++||+-..
T Consensus       246 yfrd~G~~VLl~~DslTR~  264 (444)
T PRK08972        246 YFRDQGLNVLLLMDSLTRY  264 (444)
T ss_pred             HHHHcCCCEEEEEcChHHH
Confidence            55  589999999998654

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.09  E-value=0.029  Score=47.87  Aligned_cols=40  Identities=18%  Similarity=0.120  Sum_probs=29.8

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIG  144 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~  144 (180)
                      ..+.+++++.++..+.+.+.           .+..|++.++|.+..+...-
T Consensus       172 ~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~L  222 (585)
T PRK14950        172 QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLL  222 (585)
T ss_pred             ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            46778888888888777664           57789999999886554433

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=96.09  E-value=0.059  Score=48.00  Aligned_cols=20  Identities=30%  Similarity=0.298  Sum_probs=17.0

Q ss_pred             ceEeecCCChhhhHHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK  124 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~  124 (180)
                      ..+.+++++.++..++|...
T Consensus       343 ~~i~v~eps~~~~~~iL~~~  362 (852)
T TIGR03345       343 QVVKVEEPDEETAIRMLRGL  362 (852)
T ss_pred             eEEEeCCCCHHHHHHHHHHH
Confidence            47899999999999997544

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK06921 hypothetical protein; Provisional

Probab=96.05  E-value=0.022  Score=43.72  Aligned_cols=29  Identities=31%  Similarity=0.383  Sum_probs=20.2

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEe
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVV   32 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~   32 (180)
                      +|+|||.||..+++...  ..+...+++++.
T Consensus       126 ~G~GKThLa~aia~~l~--~~~g~~v~y~~~  154 (266)
T PRK06921        126 PGSGKTHLLTAAANELM--RKKGVPVLYFPF  154 (266)
T ss_pred             CCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence            79999999999999852  221234566653

>CHL00181 cbbX CbbX; Provisional

Probab=96.04  E-value=0.028  Score=43.61  Aligned_cols=20  Identities=0%  Similarity=0.072  Sum_probs=16.4

Q ss_pred             ceEeecCCChhhhHHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK  124 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~  124 (180)
                      ..+.+++++.+|-.+++...
T Consensus       189 ~~i~F~~~t~~el~~I~~~~  208 (287)
T CHL00181        189 NHVDFPDYTPEELLQIAKIM  208 (287)
T ss_pred             ceEEcCCcCHHHHHHHHHHH
Confidence            46888899999988887775

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.03  E-value=0.022  Score=49.07  Aligned_cols=64  Identities=23%  Similarity=0.294  Sum_probs=44.5

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh--CCCcE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL--SKKKF   78 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L--~~k~~   78 (180)
                      ++|.||||||.-++++     ..| -++=|+.|...+...+-..|...+...                  ..+  .+++.
T Consensus       334 ppGlGKTTLAHViAkq-----aGY-sVvEINASDeRt~~~v~~kI~~avq~~------------------s~l~adsrP~  389 (877)
T KOG1969|consen  334 PPGLGKTTLAHVIAKQ-----AGY-SVVEINASDERTAPMVKEKIENAVQNH------------------SVLDADSRPV  389 (877)
T ss_pred             CCCCChhHHHHHHHHh-----cCc-eEEEecccccccHHHHHHHHHHHHhhc------------------cccccCCCcc
Confidence            5899999999999998     233 356678888777777777776655322                  112  14666


Q ss_pred             EEEEeCCCCc
Q 046006           79 VLLLDDKWER   88 (180)
Q Consensus        79 LlVlDdv~~~   88 (180)
                      -||+|.++..
T Consensus       390 CLViDEIDGa  399 (877)
T KOG1969|consen  390 CLVIDEIDGA  399 (877)
T ss_pred             eEEEecccCC
Confidence            7888888765

>PRK12597 F0F1 ATP synthase subunit beta; Provisional

Probab=96.03  E-value=0.014  Score=48.08  Aligned_cols=84  Identities=19%  Similarity=0.237  Sum_probs=51.1

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChH------HHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSE------EKALEIFR   71 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~------~~~~~l~~   71 (180)
                      +|+|||||+..+.++.  .+++-+.++++-+++.. ...++...+...-.....   ......+..      ...-.+.+
T Consensus       152 ~G~GKt~Ll~~~~~~~--~~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~a~tiAE  229 (461)
T PRK12597        152 AGVGKTVLMMELIFNI--SKQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTGLTIAE  229 (461)
T ss_pred             CCCChhHHHHHHHHHH--HhhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            6999999999998884  22356788888777654 556666666543221100   011112211      12334555


Q ss_pred             Hh---CCCcEEEEEeCCCC
Q 046006           72 FL---SKKKFVLLLDDKWE   87 (180)
Q Consensus        72 ~L---~~k~~LlVlDdv~~   87 (180)
                      ++   .++.+|+++||+-.
T Consensus       230 yfrd~~G~~VLl~~DslTR  248 (461)
T PRK12597        230 YLRDEEKEDVLLFIDNIFR  248 (461)
T ss_pred             HHHHhcCCceEEEeccchH
Confidence            55   37899999999954

>PRK04328 hypothetical protein; Provisional

Probab=96.02  E-value=0.018  Score=43.65  Aligned_cols=81  Identities=9%  Similarity=0.009  Sum_probs=45.5

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC------C-------CC-----------
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLD------G-------DS-----------   56 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~-------~~-----------   56 (180)
                      .+|+|||+||.++....  . ..-...+|++..++  ..++.+ .++.++.+.      .       ..           
T Consensus        31 ~pGsGKT~l~~~fl~~~--~-~~ge~~lyis~ee~--~~~i~~-~~~~~g~d~~~~~~~~~l~iid~~~~~~~~~~~~~~  104 (249)
T PRK04328         31 GPGTGKSIFSQQFLWNG--L-QMGEPGVYVALEEH--PVQVRR-NMRQFGWDVRKYEEEGKFAIVDAFTGGIGSAAKREK  104 (249)
T ss_pred             CCCCCHHHHHHHHHHHH--H-hcCCcEEEEEeeCC--HHHHHH-HHHHcCCCHHHHhhcCCEEEEecccccccccccccc
Confidence            37999999999987662  1 22356788876653  333332 233333210      0       00           


Q ss_pred             ---CCCcChHHHHHHHHHHhCC-CcEEEEEeCCCC
Q 046006           57 ---WKNKNSEEKALEIFRFLSK-KKFVLLLDDKWE   87 (180)
Q Consensus        57 ---~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~~   87 (180)
                         ....+.++....+.+.++. +.-++|+|.+..
T Consensus       105 ~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~  139 (249)
T PRK04328        105 YVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVST  139 (249)
T ss_pred             ccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhH
Confidence               0123455666666666643 455799998743

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=95.95  E-value=0.028  Score=43.54  Aligned_cols=20  Identities=5%  Similarity=0.001  Sum_probs=17.2

Q ss_pred             ceEeecCCChhhhHHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK  124 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~  124 (180)
                      ..+++++++.+|-.+++...
T Consensus       188 ~~i~fp~l~~edl~~I~~~~  207 (284)
T TIGR02880       188 HHVDFPDYSEAELLVIAGLM  207 (284)
T ss_pred             cEEEeCCcCHHHHHHHHHHH
Confidence            46889999999999998875

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.95  E-value=0.16  Score=43.39  Aligned_cols=41  Identities=15%  Similarity=0.225  Sum_probs=30.3

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChH-HHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPL-ALITIGR  145 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PL-al~~~~~  145 (180)
                      ..+++.+++.++..+.+.+.           ....|++.++|.+- ++..+-.
T Consensus       170 ~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldq  222 (584)
T PRK14952        170 HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQ  222 (584)
T ss_pred             eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            57889999999988888764           56678888999774 4444433

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=95.94  E-value=0.0042  Score=41.53  Aligned_cols=17  Identities=29%  Similarity=0.618  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus         6 ~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    6 IPGSGKTTIAKELAERL   22 (129)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            47999999999998883

...

>PRK06620 hypothetical protein; Validated

Probab=95.94  E-value=0.14  Score=37.93  Aligned_cols=43  Identities=5%  Similarity=-0.067  Sum_probs=30.1

Q ss_pred             cccccccceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006           98 CGLVEANKNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL  140 (180)
Q Consensus        98 ~~~~~~~~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal  140 (180)
                      .+++....++++++++.++-..++.+.           ...-|++.+.|.--.+
T Consensus       133 ~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l  186 (214)
T PRK06620        133 SSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKI  186 (214)
T ss_pred             HHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHH
Confidence            334444458999999999988887766           5666777777655444

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=95.92  E-value=0.21  Score=39.57  Aligned_cols=37  Identities=16%  Similarity=0.179  Sum_probs=29.7

Q ss_pred             ceEeecCCChhhhHHHHHHH-------HHHHHHHHcCCChHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-------LAQTVAKKCVGLPLALI  141 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-------~~~~i~~~c~g~PLal~  141 (180)
                      ..+.+.+++.+++.+.+.+.       .+..++..++|.|+...
T Consensus       158 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~la~Gsp~~A~  201 (328)
T PRK05707        158 QQQACPLPSNEESLQWLQQALPESDERERIELLTLAGGSPLRAL  201 (328)
T ss_pred             eeeeCCCcCHHHHHHHHHHhcccCChHHHHHHHHHcCCCHHHHH
Confidence            57889999999999888774       35677889999997443

>PRK14974 cell division protein FtsY; Provisional

Probab=95.92  E-value=0.04  Score=43.73  Aligned_cols=85  Identities=16%  Similarity=0.109  Sum_probs=43.5

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCcChHHHH-HHHHHHhCCCcE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKA-LEIFRFLSKKKF   78 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-~~l~~~L~~k~~   78 (180)
                      ++|+||||++..+++.+.  ...+. +..+.... .....+-+....+.++.+-.......++.... +.+...-....=
T Consensus       148 ~~GvGKTTtiakLA~~l~--~~g~~-V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~~~D  224 (336)
T PRK14974        148 VNGTGKTTTIAKLAYYLK--KNGFS-VVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGID  224 (336)
T ss_pred             CCCCCHHHHHHHHHHHHH--HcCCe-EEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhCCCC
Confidence            579999998888887753  22332 33343221 12333445666777765411112223333322 323332222233


Q ss_pred             EEEEeCCCCc
Q 046006           79 VLLLDDKWER   88 (180)
Q Consensus        79 LlVlDdv~~~   88 (180)
                      ++++|.+-..
T Consensus       225 vVLIDTaGr~  234 (336)
T PRK14974        225 VVLIDTAGRM  234 (336)
T ss_pred             EEEEECCCcc
Confidence            8889988654

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=95.91  E-value=0.034  Score=39.81  Aligned_cols=39  Identities=21%  Similarity=0.181  Sum_probs=25.2

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEI   44 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~   44 (180)
                      .||+|||+||.+++....   ..=..++|++...  +..++.+.
T Consensus         7 ~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~--~~~~~~~~   45 (187)
T cd01124           7 GPGTGKTTFALQFLYAGL---ARGEPGLYVTLEE--SPEELIEN   45 (187)
T ss_pred             CCCCCHHHHHHHHHHHHH---HCCCcEEEEECCC--CHHHHHHH
Confidence            489999999999887742   2224567776654  34444433

A related protein is found in archaea.

>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B

Probab=95.90  E-value=0.022  Score=43.81  Aligned_cols=87  Identities=15%  Similarity=0.159  Sum_probs=50.6

Q ss_pred             CCCcHHHHHHHHHccccc-ccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCCC---CCCCcChH------HHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLV-SSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDGD---SWKNKNSE------EKALEIF   70 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~-~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~---~~~~~~~~------~~~~~l~   70 (180)
                      .|+|||+|+..+.++... .+.+-+.++++-+++.. ...++..++...=..+..-   .....+..      -..-.+.
T Consensus        78 ~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~~~a~aiA  157 (276)
T cd01135          78 SGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITPRMALTTA  157 (276)
T ss_pred             CCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence            589999999998887310 11234678888888765 5666666665532211000   01111111      1223455


Q ss_pred             HHhC---CCcEEEEEeCCCCc
Q 046006           71 RFLS---KKKFVLLLDDKWER   88 (180)
Q Consensus        71 ~~L~---~k~~LlVlDdv~~~   88 (180)
                      ++++   ++++|+++||+-..
T Consensus       158 Eyfrd~~g~~VLl~~D~ltr~  178 (276)
T cd01135         158 EYLAYEKGKHVLVILTDMTNY  178 (276)
T ss_pred             HHHHhccCCeEEEEEcChhHH
Confidence            5552   68999999998654

These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.89  E-value=0.13  Score=44.26  Aligned_cols=34  Identities=18%  Similarity=0.194  Sum_probs=27.3

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPL  138 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PL  138 (180)
                      ..+++.+++.++....+.+.           .+..|++.++|..-
T Consensus       179 ~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr  223 (620)
T PRK14954        179 QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMR  223 (620)
T ss_pred             eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH
Confidence            57889999999988777753           67889999999554

>PRK08149 ATP synthase SpaL; Validated

Probab=95.88  E-value=0.036  Score=45.36  Aligned_cols=82  Identities=16%  Similarity=0.195  Sum_probs=47.3

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCC---CCCCCcCh------HHHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD-LQLEKIQEIVGKKVGLLDG---DSWKNKNS------EEKALEIFR   71 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~------~~~~~~l~~   71 (180)
                      +|+|||||...++...     .-+.++...+... ....++.............   ......+.      ......+.+
T Consensus       160 sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~a~tiAE  234 (428)
T PRK08149        160 AGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVATTVAE  234 (428)
T ss_pred             CCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHHHHHHHH
Confidence            6999999999998872     3345555555544 3566666666654322100   00111111      122333444


Q ss_pred             Hh--CCCcEEEEEeCCCCc
Q 046006           72 FL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        72 ~L--~~k~~LlVlDdv~~~   88 (180)
                      ++  +++++||++||+-..
T Consensus       235 ~fr~~G~~Vll~~DslTr~  253 (428)
T PRK08149        235 YFRDQGKRVVLFIDSMTRY  253 (428)
T ss_pred             HHHHcCCCEEEEccchHHH
Confidence            44  589999999998654

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.88  E-value=0.19  Score=43.28  Aligned_cols=36  Identities=17%  Similarity=0.089  Sum_probs=28.5

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL  140 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal  140 (180)
                      .++++.+++.++....+.+.           .+..|++.++|..--+
T Consensus       173 ~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~a  219 (614)
T PRK14971        173 QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDA  219 (614)
T ss_pred             heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence            57889999999998888764           5778999999866433

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=95.86  E-value=0.28  Score=38.22  Aligned_cols=36  Identities=17%  Similarity=0.038  Sum_probs=29.0

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL  140 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal  140 (180)
                      ..++++++++++....+...           ....+++.++|.+--+
T Consensus       154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~  200 (319)
T PRK00440        154 AVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKA  200 (319)
T ss_pred             heeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence            36788999999988887765           6888999999887653

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.85  E-value=0.036  Score=44.58  Aligned_cols=82  Identities=21%  Similarity=0.224  Sum_probs=45.1

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV   79 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L   79 (180)
                      ++|+||||++..++..+. .+.....+..++... .....+-+....+.++.+ ..  ...+..++...+ ..+.++ -+
T Consensus       145 ptGvGKTTtiakLA~~~~-~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~-~~--~~~~~~~l~~~l-~~l~~~-Dl  218 (374)
T PRK14722        145 PTGVGKTTTTAKLAARCV-MRFGASKVALLTTDSYRIGGHEQLRIFGKILGVP-VH--AVKDGGDLQLAL-AELRNK-HM  218 (374)
T ss_pred             CCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecccccccHHHHHHHHHHHcCCc-eE--ecCCcccHHHHH-HHhcCC-CE
Confidence            479999999999988742 111123455555433 345556667777777765 11  112222333333 334454 45


Q ss_pred             EEEeCCCCc
Q 046006           80 LLLDDKWER   88 (180)
Q Consensus        80 lVlDdv~~~   88 (180)
                      +++|..-..
T Consensus       219 VLIDTaG~~  227 (374)
T PRK14722        219 VLIDTIGMS  227 (374)
T ss_pred             EEEcCCCCC
Confidence            568887543

>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain

Probab=95.83  E-value=0.049  Score=41.87  Aligned_cols=82  Identities=11%  Similarity=0.192  Sum_probs=44.1

Q ss_pred             CCCcHHHHH-HHHHcccccccCCCCeE-EEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChHH------HHHHH
Q 046006            2 GGVGKTTLL-THINNKFLVSSTDFDCV-IWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSEE------KALEI   69 (180)
Q Consensus         2 gGiGKTtLA-~~~~~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~------~~~~l   69 (180)
                      +|+|||+|| ..+.++     .+-+.+ +++-+++.. ...++.+++...=.....   ......+...      ..-.+
T Consensus        78 ~g~GKt~L~l~~i~~~-----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~ai  152 (274)
T cd01132          78 RQTGKTAIAIDTIINQ-----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAM  152 (274)
T ss_pred             CCCCccHHHHHHHHHh-----cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHHHHHH
Confidence            579999996 455554     233445 666677654 456666666543211100   0011111111      12333


Q ss_pred             HHHh--CCCcEEEEEeCCCCc
Q 046006           70 FRFL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        70 ~~~L--~~k~~LlVlDdv~~~   88 (180)
                      .+++  +++.+|+++||+-..
T Consensus       153 AE~fr~~G~~Vlvl~DslTr~  173 (274)
T cd01132         153 GEYFMDNGKHALIIYDDLSKQ  173 (274)
T ss_pred             HHHHHHCCCCEEEEEcChHHH
Confidence            4444  588999999998654

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.

>PTZ00185 ATPase alpha subunit; Provisional

Probab=95.82  E-value=0.06  Score=45.04  Aligned_cols=86  Identities=13%  Similarity=0.126  Sum_probs=48.4

Q ss_pred             CCCcHHHHH-HHHHcccccc-----cCCCCeEEEEEeCCCCCHHHHHHHHHHHhC-CCCCC---CCCCcChHH------H
Q 046006            2 GGVGKTTLL-THINNKFLVS-----STDFDCVIWIVVSKDLQLEKIQEIVGKKVG-LLDGD---SWKNKNSEE------K   65 (180)
Q Consensus         2 gGiGKTtLA-~~~~~~~~~~-----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~~---~~~~~~~~~------~   65 (180)
                      .|+|||+|| -.+.++- .+     .++-+.++++-+++..+...-+.+.++.-+ ....-   .....+...      .
T Consensus       198 ~GtGKTtLAld~IinQ~-~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~r~~Apy~  276 (574)
T PTZ00185        198 RQTGKTSIAVSTIINQV-RINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQYLAPYS  276 (574)
T ss_pred             CCCChHHHHHHHHHhhh-hhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHHHHHHHHH
Confidence            599999997 5567762 11     123457788889887654444555555544 11000   001111111      1


Q ss_pred             HHHHHHHh--CCCcEEEEEeCCCCc
Q 046006           66 ALEIFRFL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        66 ~~~l~~~L--~~k~~LlVlDdv~~~   88 (180)
                      .-.+.+++  +++..|+|+||+-..
T Consensus       277 a~tiAEYFrd~GkdVLiv~DDLTr~  301 (574)
T PTZ00185        277 GVTMGEYFMNRGRHCLCVYDDLSKQ  301 (574)
T ss_pred             HHHHHHHHHHcCCCEEEEEcCchHH
Confidence            23344444  588999999998764

>cd01131 PilT Pilus retraction ATPase PilT

Probab=95.81  E-value=0.011  Score=43.35  Aligned_cols=80  Identities=11%  Similarity=0.084  Sum_probs=42.0

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHH-HHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLE-KIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV   79 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L   79 (180)
                      .+|+||||++..+.....   ......++.. ..+.... .-...+..+-.      . ..+.....+.++..|+..+=.
T Consensus         9 ptGSGKTTll~~ll~~~~---~~~~~~i~t~-e~~~E~~~~~~~~~i~q~~------v-g~~~~~~~~~i~~aLr~~pd~   77 (198)
T cd01131           9 PTGSGKSTTLAAMIDYIN---KNKTHHILTI-EDPIEFVHESKRSLINQRE------V-GLDTLSFENALKAALRQDPDV   77 (198)
T ss_pred             CCCCCHHHHHHHHHHHhh---hcCCcEEEEE-cCCccccccCccceeeecc------c-CCCccCHHHHHHHHhcCCcCE
Confidence            369999999998877742   2333444432 1111100 00000111100      0 112233556677888777889


Q ss_pred             EEEeCCCCcccc
Q 046006           80 LLLDDKWERVDL   91 (180)
Q Consensus        80 lVlDdv~~~~~l   91 (180)
                      +++|++.+.+.+
T Consensus        78 ii~gEird~e~~   89 (198)
T cd01131          78 ILVGEMRDLETI   89 (198)
T ss_pred             EEEcCCCCHHHH
Confidence            999999766543

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>CHL00195 ycf46 Ycf46; Provisional

Probab=95.78  E-value=0.09  Score=43.88  Aligned_cols=32  Identities=9%  Similarity=0.072  Sum_probs=23.4

Q ss_pred             ceEeecCCChhhhHHHHHHH------------HHHHHHHHcCCC
Q 046006          105 KNFKVECLSDNDAWELLRQK------------LAQTVAKKCVGL  136 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~------------~~~~i~~~c~g~  136 (180)
                      ..+.++..+.++-.++|..+            ....+++.+.|.
T Consensus       385 ~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~Gf  428 (489)
T CHL00195        385 EIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKF  428 (489)
T ss_pred             eEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCC
Confidence            46778878888888888876            245677777665

>PRK08927 fliI flagellum-specific ATP synthase; Validated

Probab=95.77  E-value=0.078  Score=43.57  Aligned_cols=82  Identities=18%  Similarity=0.205  Sum_probs=47.2

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChH------HHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSE------EKALEIFR   71 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~------~~~~~l~~   71 (180)
                      +|+|||||++.+++..     ..+.+++.-+++.. ...++..+.+..-+.+..   ......+..      ...-.+.+
T Consensus       167 sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~a~tiAE  241 (442)
T PRK08927        167 SGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLTLAIAE  241 (442)
T ss_pred             CCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            6999999999998873     23556666676654 444555555443222100   001111111      12233445


Q ss_pred             Hh--CCCcEEEEEeCCCCc
Q 046006           72 FL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        72 ~L--~~k~~LlVlDdv~~~   88 (180)
                      ++  +++.+|+++||+-..
T Consensus       242 yfrd~G~~Vll~~DslTr~  260 (442)
T PRK08927        242 YFRDQGKDVLCLMDSVTRF  260 (442)
T ss_pred             HHHHCCCcEEEEEeCcHHH
Confidence            55  588999999998653

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=95.77  E-value=0.042  Score=43.66  Aligned_cols=17  Identities=24%  Similarity=0.462  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+++.+.+.+
T Consensus         7 l~GaGKST~~~~l~~~l   23 (340)
T TIGR03575         7 LPAAGKSTLARSLSATL   23 (340)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            58999999999999875

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PRK12678 transcription termination factor Rho; Provisional

Probab=95.75  E-value=0.014  Score=49.22  Aligned_cols=84  Identities=25%  Similarity=0.276  Sum_probs=45.1

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEE-EeCCCC-CHHHHHHHHHHHhCCCCCCCCCC---cChHHHHHHHHHHh--
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWI-VVSKDL-QLEKIQEIVGKKVGLLDGDSWKN---KNSEEKALEIFRFL--   73 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv-~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~---~~~~~~~~~l~~~L--   73 (180)
                      .+|+|||||++.+++..  ..++-++.+++ -+++.. .+.++.+.+-..+-.. ..+.+.   .....+.-.+.+++  
T Consensus       424 pp~aGKTtLL~~IAn~i--~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVas-T~D~p~~~~~~~a~~ai~~Ae~fre  500 (672)
T PRK12678        424 PPKAGKTTILQNIANAI--TTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIAS-TFDRPPSDHTTVAELAIERAKRLVE  500 (672)
T ss_pred             CCCCCHHHHHHHHHHHH--hhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEE-CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            37999999999999974  22444555444 355544 3444433331111111 001111   01122333445555  


Q ss_pred             CCCcEEEEEeCCCC
Q 046006           74 SKKKFVLLLDDKWE   87 (180)
Q Consensus        74 ~~k~~LlVlDdv~~   87 (180)
                      .++.+||++|++-.
T Consensus       501 ~G~dVlillDSlTR  514 (672)
T PRK12678        501 LGKDVVVLLDSITR  514 (672)
T ss_pred             cCCCEEEEEeCchH
Confidence            58999999999864

>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit

Probab=95.75  E-value=0.035  Score=45.66  Aligned_cols=86  Identities=14%  Similarity=0.195  Sum_probs=51.0

Q ss_pred             CCCcHHHHHHHHHcccccccC--CCC---------eEEEEEeCCCCCHHHHHHHHHHHhC-CCCC---CCCCCcCh-H--
Q 046006            2 GGVGKTTLLTHINNKFLVSST--DFD---------CVIWIVVSKDLQLEKIQEIVGKKVG-LLDG---DSWKNKNS-E--   63 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~--~f~---------~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~---~~~~~~~~-~--   63 (180)
                      +|+|||+|+..+.++. ....  -.|         .+++.-+++.....+.+...+..-+ ....   ......+. .  
T Consensus       150 sGvGKs~L~~~i~~~~-~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd~p~~~R~  228 (466)
T TIGR01040       150 AGLPHNEIAAQICRQA-GLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDPTIERI  228 (466)
T ss_pred             CCCCHHHHHHHHHHhh-ccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence            5999999999998873 2100  012         5677778888777776766666655 2100   00111111 1  


Q ss_pred             ---HHHHHHHHHhC---CCcEEEEEeCCCCc
Q 046006           64 ---EKALEIFRFLS---KKKFVLLLDDKWER   88 (180)
Q Consensus        64 ---~~~~~l~~~L~---~k~~LlVlDdv~~~   88 (180)
                         -..-.+.++++   ++++|+++||+-..
T Consensus       229 ~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~  259 (466)
T TIGR01040       229 ITPRLALTTAEYLAYQCEKHVLVILTDMSSY  259 (466)
T ss_pred             HHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence               12233556665   68999999998643

This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=95.72  E-value=0.05  Score=40.52  Aligned_cols=30  Identities=37%  Similarity=0.446  Sum_probs=21.2

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK   34 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~   34 (180)
                      +|+|||+||.+++....   ..-..++|++...
T Consensus        29 ~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~   58 (229)
T TIGR03881        29 PGTGKTIFCLHFAYKGL---RDGDPVIYVTTEE   58 (229)
T ss_pred             CCCChHHHHHHHHHHHH---hcCCeEEEEEccC
Confidence            79999999998876522   2235678887644

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]

Probab=95.72  E-value=0.045  Score=41.62  Aligned_cols=16  Identities=31%  Similarity=0.418  Sum_probs=14.8

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      ++|.|||-||+.++++
T Consensus       189 ppgtGktLlaraVahh  204 (404)
T KOG0728|consen  189 PPGTGKTLLARAVAHH  204 (404)
T ss_pred             CCCCchhHHHHHHHhh
Confidence            4899999999999988

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=95.71  E-value=0.043  Score=43.19  Aligned_cols=87  Identities=14%  Similarity=0.145  Sum_probs=48.2

Q ss_pred             CCCCcHHHHHHHHHccc--ccccC-CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCCcChHHH---HHH
Q 046006            1 MGGVGKTTLLTHINNKF--LVSST-DFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD------SWKNKNSEEK---ALE   68 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~--~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~---~~~   68 (180)
                      .+|+|||+||..++...  ..... .-..++|++....++... +..+++.++.....      .....+.++.   ...
T Consensus       104 ~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~  182 (316)
T TIGR02239       104 EFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLNPEDVLDNVAYARAYNTDHQLQLLQQ  182 (316)
T ss_pred             CCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCChHHhhccEEEEecCChHHHHHHHHH
Confidence            37999999999987531  10011 113568998877777765 34455655543110      0011233333   333


Q ss_pred             HHHHh-CCCcEEEEEeCCCCc
Q 046006           69 IFRFL-SKKKFVLLLDDKWER   88 (180)
Q Consensus        69 l~~~L-~~k~~LlVlDdv~~~   88 (180)
                      +...+ ..+.-|+|+|.+...
T Consensus       183 ~~~~~~~~~~~LvVIDSI~al  203 (316)
T TIGR02239       183 AAAMMSESRFALLIVDSATAL  203 (316)
T ss_pred             HHHhhccCCccEEEEECcHHH
Confidence            33334 345679999997543

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>PRK06217 hypothetical protein; Validated

Probab=95.71  E-value=0.019  Score=41.41  Aligned_cols=28  Identities=25%  Similarity=0.472  Sum_probs=20.1

Q ss_pred             CCCCcHHHHHHHHHcccccccCCC--CeEEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDF--DCVIWI   30 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f--~~~~wv   30 (180)
                      ++|+||||+|+.+...+.  ..++  |..+|.
T Consensus         9 ~~GsGKSTla~~L~~~l~--~~~~~~D~~~~~   38 (183)
T PRK06217          9 ASGSGTTTLGAALAERLD--IPHLDTDDYFWL   38 (183)
T ss_pred             CCCCCHHHHHHHHHHHcC--CcEEEcCceeec
Confidence            479999999999998853  1233  455664

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=95.70  E-value=0.19  Score=40.87  Aligned_cols=30  Identities=20%  Similarity=0.136  Sum_probs=24.4

Q ss_pred             ccccccccccceEeecCCChhhhHHHHHHH
Q 046006           95 LFVCGLVEANKNFKVECLSDNDAWELLRQK  124 (180)
Q Consensus        95 ~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~  124 (180)
                      .++.+++...-++++.+++.+....++.+.
T Consensus       227 ~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kk  256 (408)
T COG0593         227 DRLRSRLEWGLVVEIEPPDDETRLAILRKK  256 (408)
T ss_pred             HHHHHHHhceeEEeeCCCCHHHHHHHHHHH
Confidence            456666666678999999999999998886

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=95.69  E-value=0.11  Score=44.81  Aligned_cols=108  Identities=16%  Similarity=0.179  Sum_probs=59.9

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL   80 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll   80 (180)
                      +||+|||+|++.++.-+.   +.|   +=++++.-.+..++-        .. .+..-..-+...++.+++. ..++=++
T Consensus       358 PPGVGKTSLgkSIA~al~---Rkf---vR~sLGGvrDEAEIR--------GH-RRTYIGamPGrIiQ~mkka-~~~NPv~  421 (782)
T COG0466         358 PPGVGKTSLGKSIAKALG---RKF---VRISLGGVRDEAEIR--------GH-RRTYIGAMPGKIIQGMKKA-GVKNPVF  421 (782)
T ss_pred             CCCCCchhHHHHHHHHhC---CCE---EEEecCccccHHHhc--------cc-cccccccCChHHHHHHHHh-CCcCCeE
Confidence            689999999999998853   333   113344333333331        11 1111122344444444443 3345588


Q ss_pred             EEeCCCCccccccc----------------------------------cccccc--------ccccceEeecCCChhhhH
Q 046006           81 LLDDKWERVDLNKG----------------------------------LFVCGL--------VEANKNFKVECLSDNDAW  118 (180)
Q Consensus        81 VlDdv~~~~~l~~g----------------------------------~~~~~~--------~~~~~~~~l~~L~~~~a~  118 (180)
                      +||.++....--.|                                  -.-++.        +....++++.+-+++|=.
T Consensus       422 LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl  501 (782)
T COG0466         422 LLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKL  501 (782)
T ss_pred             EeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHH
Confidence            89999876321111                                  001111        122357889999999998


Q ss_pred             HHHHHH
Q 046006          119 ELLRQK  124 (180)
Q Consensus       119 ~Lf~~~  124 (180)
                      ++-.++
T Consensus       502 ~IAk~~  507 (782)
T COG0466         502 EIAKRH  507 (782)
T ss_pred             HHHHHh
Confidence            888877

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=95.68  E-value=0.24  Score=43.23  Aligned_cols=39  Identities=21%  Similarity=0.186  Sum_probs=29.9

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChH-HHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPL-ALITI  143 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PL-al~~~  143 (180)
                      ..+++.+++.++..+.+...           .+..|++.++|.+- |+..+
T Consensus       170 q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslL  220 (725)
T PRK07133        170 QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIA  220 (725)
T ss_pred             eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            57889999999998888764           57789999998764 44433

>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha

Probab=95.66  E-value=0.036  Score=46.08  Aligned_cols=82  Identities=15%  Similarity=0.160  Sum_probs=47.5

Q ss_pred             CCCcHHHHHH-HHHcccccccCCCCe-EEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcCh-HH-----HHHHH
Q 046006            2 GGVGKTTLLT-HINNKFLVSSTDFDC-VIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNS-EE-----KALEI   69 (180)
Q Consensus         2 gGiGKTtLA~-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~-~~-----~~~~l   69 (180)
                      .|+|||+||. .+.++     ..-+. ++++-+++.. ...++.+.+...=..+..   ......+. .+     ....+
T Consensus       171 ~g~GKT~Lal~~I~~q-----~~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ap~~a~ai  245 (497)
T TIGR03324       171 RQTGKTAIAIDTILNQ-----KGRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPYAATSI  245 (497)
T ss_pred             CCCCHHHHHHHHHHHh-----cCCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            4999999974 67776     23354 6788888765 556666666554222100   00111111 11     12334


Q ss_pred             HHHh--CCCcEEEEEeCCCCc
Q 046006           70 FRFL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        70 ~~~L--~~k~~LlVlDdv~~~   88 (180)
                      .+++  +++.+|+|+||+...
T Consensus       246 AEyfrd~G~~VLlv~DdlTr~  266 (497)
T TIGR03324       246 GEHFMEQGRDVLIVYDDLTQH  266 (497)
T ss_pred             HHHHHhCCCCEEEEEcChhHH
Confidence            5555  588999999998654

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.

>PRK03839 putative kinase; Provisional

Probab=95.65  E-value=0.0063  Score=43.63  Aligned_cols=17  Identities=41%  Similarity=0.571  Sum_probs=15.7

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      |+|+||||+|+.+++.+
T Consensus         8 ~pGsGKsT~~~~La~~~   24 (180)
T PRK03839          8 TPGVGKTTVSKLLAEKL   24 (180)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            68999999999999985

>PRK05973 replicative DNA helicase; Provisional

Probab=95.65  E-value=0.081  Score=39.91  Aligned_cols=40  Identities=13%  Similarity=0.160  Sum_probs=25.3

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIV   45 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i   45 (180)
                      .||+|||++|.+++....  ++ -..+++++...+  ..++...+
T Consensus        72 ~PG~GKT~lalqfa~~~a--~~-Ge~vlyfSlEes--~~~i~~R~  111 (237)
T PRK05973         72 RPGHGKTLLGLELAVEAM--KS-GRTGVFFTLEYT--EQDVRDRL  111 (237)
T ss_pred             CCCCCHHHHHHHHHHHHH--hc-CCeEEEEEEeCC--HHHHHHHH
Confidence            379999999999887632  22 234666665543  44555444

>PRK09280 F0F1 ATP synthase subunit beta; Validated

Probab=95.64  E-value=0.067  Score=44.19  Aligned_cols=85  Identities=15%  Similarity=0.203  Sum_probs=49.8

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChHH------HHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSEE------KALEIFR   71 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~------~~~~l~~   71 (180)
                      +|+|||||+..+.....  .++-+.++++-+++.. ...++++++...=..+..   ......+...      ..-.+.+
T Consensus       153 ~GvGKt~Ll~~i~~~~~--~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a~tiAE  230 (463)
T PRK09280        153 AGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTGLTMAE  230 (463)
T ss_pred             CCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            69999999998877632  1222467777777654 566667666653221100   0111121221      2334556


Q ss_pred             Hh---CCCcEEEEEeCCCCc
Q 046006           72 FL---SKKKFVLLLDDKWER   88 (180)
Q Consensus        72 ~L---~~k~~LlVlDdv~~~   88 (180)
                      ++   +++.+||++||+-..
T Consensus       231 yfrd~~G~~VLll~DslTR~  250 (463)
T PRK09280        231 YFRDVEGQDVLLFIDNIFRF  250 (463)
T ss_pred             HHHHhcCCceEEEecchHHH
Confidence            66   578999999998653

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.63  E-value=0.07  Score=46.44  Aligned_cols=64  Identities=22%  Similarity=0.210  Sum_probs=37.4

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh-CCCcEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL-SKKKFV   79 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~L   79 (180)
                      +||+|||-||++|+...+        .-|+++..+        +++...         ...-++-.+.+.+.- ..++|.
T Consensus       713 PPGTGKTLlAKAVATEcs--------L~FlSVKGP--------ELLNMY---------VGqSE~NVR~VFerAR~A~PCV  767 (953)
T KOG0736|consen  713 PPGTGKTLLAKAVATECS--------LNFLSVKGP--------ELLNMY---------VGQSEENVREVFERARSAAPCV  767 (953)
T ss_pred             CCCCchHHHHHHHHhhce--------eeEEeecCH--------HHHHHH---------hcchHHHHHHHHHHhhccCCeE
Confidence            589999999999998842        234444321        111111         011233333344443 357999


Q ss_pred             EEEeCCCCcc
Q 046006           80 LLLDDKWERV   89 (180)
Q Consensus        80 lVlDdv~~~~   89 (180)
                      |.||++++..
T Consensus       768 IFFDELDSlA  777 (953)
T KOG0736|consen  768 IFFDELDSLA  777 (953)
T ss_pred             EEeccccccC
Confidence            9999998763

>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta

Probab=95.63  E-value=0.065  Score=44.10  Aligned_cols=85  Identities=21%  Similarity=0.285  Sum_probs=51.0

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChH------HHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSE------EKALEIFR   71 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~------~~~~~l~~   71 (180)
                      +|+|||+|+..+.....  ..+-+.++++-+++.. ...++.+++...=..+..   ......+..      ...-.+.+
T Consensus       147 ~G~GKt~l~~~~~~~~~--~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a~tiAE  224 (449)
T TIGR03305       147 AGVGKTVLLTEMIHNMV--GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTALTMAE  224 (449)
T ss_pred             CCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            69999999999987732  2334788888887765 455666665543211100   001111111      12344556


Q ss_pred             HhC---CCcEEEEEeCCCCc
Q 046006           72 FLS---KKKFVLLLDDKWER   88 (180)
Q Consensus        72 ~L~---~k~~LlVlDdv~~~   88 (180)
                      +++   ++++|+++||+-..
T Consensus       225 yfrd~~G~~VLl~~DslTR~  244 (449)
T TIGR03305       225 YFRDDEKQDVLLLIDNIFRF  244 (449)
T ss_pred             HHHHhcCCceEEEecChHHH
Confidence            654   68999999998654

A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.

>PRK06936 type III secretion system ATPase; Provisional

Probab=95.62  E-value=0.038  Score=45.29  Aligned_cols=82  Identities=22%  Similarity=0.276  Sum_probs=47.7

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChHH------HHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSEE------KALEIFR   71 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~------~~~~l~~   71 (180)
                      +|+|||||.+.+++..     .-+.+++.-+++.. ...++....+..-+.+..   ......+...      ..-.+.+
T Consensus       171 sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAE  245 (439)
T PRK06936        171 AGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAE  245 (439)
T ss_pred             CCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            6999999999999883     33667777777654 455555444433221100   0111122211      1223444


Q ss_pred             Hh--CCCcEEEEEeCCCCc
Q 046006           72 FL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        72 ~L--~~k~~LlVlDdv~~~   88 (180)
                      ++  +++++|+++||+-..
T Consensus       246 yfrd~G~~Vll~~DslTR~  264 (439)
T PRK06936        246 YFRDQGKRVLLLMDSVTRF  264 (439)
T ss_pred             HHHHcCCCEEEeccchhHH
Confidence            44  589999999998754

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.61  E-value=0.021  Score=44.80  Aligned_cols=74  Identities=16%  Similarity=0.084  Sum_probs=44.4

Q ss_pred             CCCCcHHHHHHHHHccccccc--CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCC--
Q 046006            1 MGGVGKTTLLTHINNKFLVSS--TDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKK--   76 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k--   76 (180)
                      +||.|||+|++.+++.+. ++  +.|....-+.++.        ..++...-.     ....-+..+.+++.+.+.++  
T Consensus       185 PPGTGKTSLCKaLaQkLS-IR~~~~y~~~~liEins--------hsLFSKWFs-----ESgKlV~kmF~kI~ELv~d~~~  250 (423)
T KOG0744|consen  185 PPGTGKTSLCKALAQKLS-IRTNDRYYKGQLIEINS--------HSLFSKWFS-----ESGKLVAKMFQKIQELVEDRGN  250 (423)
T ss_pred             CCCCChhHHHHHHHHhhe-eeecCccccceEEEEeh--------hHHHHHHHh-----hhhhHHHHHHHHHHHHHhCCCc
Confidence            689999999999999974 33  2333333333321        223333211     12344667777788888655  


Q ss_pred             cEEEEEeCCCCc
Q 046006           77 KFVLLLDDKWER   88 (180)
Q Consensus        77 ~~LlVlDdv~~~   88 (180)
                      -+.+.+|+|.+.
T Consensus       251 lVfvLIDEVESL  262 (423)
T KOG0744|consen  251 LVFVLIDEVESL  262 (423)
T ss_pred             EEEEEeHHHHHH
Confidence            455677888764

>PRK11823 DNA repair protein RadA; Provisional

Probab=95.60  E-value=0.023  Score=46.82  Aligned_cols=78  Identities=19%  Similarity=0.267  Sum_probs=44.0

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCCcChHHHHHHHHHHhCCCcEE
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD--SWKNKNSEEKALEIFRFLSKKKFV   79 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~~L~~k~~L   79 (180)
                      +|+|||||+.+++....   ..-..++|++..++  ..++... ++.++.....  .....+.+++...+.   +.+.-+
T Consensus        89 pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~---~~~~~l  159 (446)
T PRK11823         89 PGIGKSTLLLQVAARLA---AAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATIE---EEKPDL  159 (446)
T ss_pred             CCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHH---hhCCCE
Confidence            79999999999988753   12235677775443  3343322 4555542110  011234444444432   245668


Q ss_pred             EEEeCCCCc
Q 046006           80 LLLDDKWER   88 (180)
Q Consensus        80 lVlDdv~~~   88 (180)
                      +|+|.+...
T Consensus       160 VVIDSIq~l  168 (446)
T PRK11823        160 VVIDSIQTM  168 (446)
T ss_pred             EEEechhhh
Confidence            999998643

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=95.58  E-value=0.16  Score=38.77  Aligned_cols=44  Identities=20%  Similarity=0.141  Sum_probs=29.1

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKK   48 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~   48 (180)
                      .+|+|||+++.+++....  ..+-..++|++...  +..++...+...
T Consensus        38 ~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~--~~~~~~~r~~~~   81 (271)
T cd01122          38 GTGVGKTTFLREYALDLI--TQHGVRVGTISLEE--PVVRTARRLLGQ   81 (271)
T ss_pred             CCCCCHHHHHHHHHHHHH--HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence            379999999999988742  23234677887654  445555555544

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=95.57  E-value=0.32  Score=41.08  Aligned_cols=38  Identities=16%  Similarity=0.223  Sum_probs=30.1

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALIT  142 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~  142 (180)
                      ..+++.+++.++..+.+.+.           .+..|++.++|.+--+..
T Consensus       169 ~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~aln  217 (535)
T PRK08451        169 QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLT  217 (535)
T ss_pred             eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHH
Confidence            57889999999998888765           677899999998854433

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=95.57  E-value=0.026  Score=38.52  Aligned_cols=36  Identities=33%  Similarity=0.281  Sum_probs=25.4

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQ   42 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~   42 (180)
                      .+|+|||+||+.+++.+.      ....-++++...+..++.
T Consensus         7 ~~G~GKt~l~~~la~~~~------~~~~~i~~~~~~~~~dl~   42 (139)
T PF07728_consen    7 PPGTGKTTLARELAALLG------RPVIRINCSSDTTEEDLI   42 (139)
T ss_dssp             SSSSSHHHHHHHHHHHHT------CEEEEEE-TTTSTHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhh------cceEEEEeccccccccce
Confidence            479999999999998851      123345677777777665

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=95.55  E-value=0.073  Score=41.01  Aligned_cols=85  Identities=19%  Similarity=0.125  Sum_probs=43.1

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCCcChHH-HHHHHHHHhCCCcE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD-LQLEKIQEIVGKKVGLLDGDSWKNKNSEE-KALEIFRFLSKKKF   78 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~~l~~~L~~k~~   78 (180)
                      ++|+||||++..++..+.   ..-..+..++.... ....+-+....+..+.+-.......++.. ....+.....+..=
T Consensus        80 ~~G~GKTTt~akLA~~l~---~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D  156 (272)
T TIGR00064        80 VNGVGKTTTIAKLANKLK---KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNID  156 (272)
T ss_pred             CCCCcHHHHHHHHHHHHH---hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCC
Confidence            489999999999988753   22224555554431 12233344445555432000111222322 23444444445556


Q ss_pred             EEEEeCCCCc
Q 046006           79 VLLLDDKWER   88 (180)
Q Consensus        79 LlVlDdv~~~   88 (180)
                      ++++|-.-..
T Consensus       157 ~ViIDT~G~~  166 (272)
T TIGR00064       157 VVLIDTAGRL  166 (272)
T ss_pred             EEEEeCCCCC
Confidence            7888876543

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=95.54  E-value=0.076  Score=38.57  Aligned_cols=78  Identities=12%  Similarity=0.049  Sum_probs=40.2

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCC---eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCc
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFD---CVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKK   77 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~   77 (180)
                      .+|+||||+|+.+...+..  ....   ....++.............--..-..-....+..-+.+.+.+.+....+++.
T Consensus         7 ~sgSGKTTla~~L~~~L~~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~~g~~   84 (194)
T PF00485_consen    7 PSGSGKTTLAKRLAQILNK--RGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALKNGGS   84 (194)
T ss_dssp             STTSSHHHHHHHHHHHHTT--CTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHHTTSC
T ss_pred             CCCCCHHHHHHHHHHHhCc--cCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHhCCCc
Confidence            4799999999999988631  2222   2334443333322222222111100100123445677777777777666665


Q ss_pred             EEE
Q 046006           78 FVL   80 (180)
Q Consensus        78 ~Ll   80 (180)
                      .-+
T Consensus        85 i~~   87 (194)
T PF00485_consen   85 IEI   87 (194)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            444

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.54  E-value=0.31  Score=40.77  Aligned_cols=39  Identities=13%  Similarity=0.100  Sum_probs=29.7

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITI  143 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~  143 (180)
                      ..+++.+++.++-...+.+.           .+..|++.++|.+..+...
T Consensus       171 ~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~  220 (486)
T PRK14953        171 QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASL  220 (486)
T ss_pred             eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence            46888999999988887775           5778888999976644433

>PTZ00035 Rad51 protein; Provisional

Probab=95.53  E-value=0.12  Score=41.07  Aligned_cols=86  Identities=17%  Similarity=0.162  Sum_probs=47.7

Q ss_pred             CCCCcHHHHHHHHHcccccc--cC-CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCCcChHHHHHHH--
Q 046006            1 MGGVGKTTLLTHINNKFLVS--ST-DFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD------SWKNKNSEEKALEI--   69 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~--~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~~~l--   69 (180)
                      .+|+|||+|+..++-.....  .. .-..++|++-...++...+ ..+++.++.....      .....+.++....+  
T Consensus       126 ~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~e~~~~~l~~  204 (337)
T PTZ00035        126 EFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNHEHQMQLLSQ  204 (337)
T ss_pred             CCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCHHHHHHHHHH
Confidence            37999999999987542100  01 1234668887776776663 4455665543100      01123334444333  


Q ss_pred             -HHHh-CCCcEEEEEeCCCC
Q 046006           70 -FRFL-SKKKFVLLLDDKWE   87 (180)
Q Consensus        70 -~~~L-~~k~~LlVlDdv~~   87 (180)
                       ...+ ..+--|+|+|.+..
T Consensus       205 ~~~~l~~~~~~lvVIDSita  224 (337)
T PTZ00035        205 AAAKMAEERFALLIVDSATA  224 (337)
T ss_pred             HHHHhhccCccEEEEECcHH
Confidence             3333 34567999999854

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=95.51  E-value=0.051  Score=44.56  Aligned_cols=82  Identities=23%  Similarity=0.257  Sum_probs=45.0

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcC-hHH-----HHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKN-SEE-----KALEIFR   71 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~-~~~-----~~~~l~~   71 (180)
                      +|+|||||.+.+++..     +.+..++..+++.. ...+++.+....=.....   ......+ ...     ..-.+.+
T Consensus       164 sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~~a~tiAE  238 (433)
T PRK07594        164 PGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAE  238 (433)
T ss_pred             CCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            6999999999998773     34555666666543 444555554321100000   0001111 111     1233445


Q ss_pred             Hh--CCCcEEEEEeCCCCc
Q 046006           72 FL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        72 ~L--~~k~~LlVlDdv~~~   88 (180)
                      ++  +++++|+++||+-..
T Consensus       239 yfrd~G~~VLl~~Dsltr~  257 (433)
T PRK07594        239 FFRDNGKRVVLLADSLTRY  257 (433)
T ss_pred             HHHHCCCcEEEEEeCHHHH
Confidence            55  588999999998754

>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit

Probab=95.50  E-value=0.055  Score=44.68  Aligned_cols=86  Identities=13%  Similarity=0.144  Sum_probs=48.2

Q ss_pred             CCCcHHHHHHHHHcccccccCCC--CeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcCh-H-----HHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDF--DCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNS-E-----EKALEI   69 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f--~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~-~-----~~~~~l   69 (180)
                      .|+|||+|+..+.++- ...+.+  ..++++-+++.. ...+++..+...=..+..   ......+. .     -....+
T Consensus       150 ~G~GKs~L~~~ia~~~-~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~~~a~ti  228 (458)
T TIGR01041       150 SGLPHNELAAQIARQA-TVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPRMALTA  228 (458)
T ss_pred             CCCCHHHHHHHHHHhh-cccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHHHHHHH
Confidence            5999999999998872 221111  156666677654 556666666543222100   00111111 1     123345


Q ss_pred             HHHhC---CCcEEEEEeCCCCc
Q 046006           70 FRFLS---KKKFVLLLDDKWER   88 (180)
Q Consensus        70 ~~~L~---~k~~LlVlDdv~~~   88 (180)
                      .++++   ++++||++||+-..
T Consensus       229 AEyfr~d~G~~VLli~DslTR~  250 (458)
T TIGR01041       229 AEYLAFEKDMHVLVILTDMTNY  250 (458)
T ss_pred             HHHHHHccCCcEEEEEcChhHH
Confidence            56664   67999999998653

Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=95.50  E-value=0.081  Score=39.74  Aligned_cols=38  Identities=26%  Similarity=0.315  Sum_probs=24.8

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQ   42 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~   42 (180)
                      ||+||||+|..++..+. . ..+ .++-++.....+.....
T Consensus        11 GGvGKTT~a~nLA~~la-~-~G~-~VlliD~DpQ~s~~~w~   48 (231)
T PRK13849         11 GGAGKTTALMGLCAALA-S-DGK-RVALFEADENRPLTRWK   48 (231)
T ss_pred             CCccHHHHHHHHHHHHH-h-CCC-cEEEEeCCCCCCHHHHH
Confidence            89999999999988863 2 222 34556665555544443

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=95.49  E-value=0.0094  Score=40.78  Aligned_cols=17  Identities=29%  Similarity=0.528  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+....
T Consensus         7 ~pgsGKSt~a~~l~~~~   23 (143)
T PF13671_consen    7 PPGSGKSTLAKRLAKRL   23 (143)
T ss_dssp             STTSSHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHC
Confidence            58999999999998773

...

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.48  E-value=0.011  Score=45.13  Aligned_cols=60  Identities=22%  Similarity=0.191  Sum_probs=36.3

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh---C-CC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL---S-KK   76 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L---~-~k   76 (180)
                      ++|.|||-+|++++|+-        ..+|+.+-        -.++.+.            .+.+.++.+++.+   + .|
T Consensus       219 ppgtgktl~aravanrt--------dacfirvi--------gselvqk------------yvgegarmvrelf~martkk  270 (435)
T KOG0729|consen  219 PPGTGKTLCARAVANRT--------DACFIRVI--------GSELVQK------------YVGEGARMVRELFEMARTKK  270 (435)
T ss_pred             CCCCchhHHHHHHhccc--------CceEEeeh--------hHHHHHH------------HhhhhHHHHHHHHHHhcccc
Confidence            58999999999999983        13333321        1122222            2334444444444   4 46


Q ss_pred             cEEEEEeCCCCc
Q 046006           77 KFVLLLDDKWER   88 (180)
Q Consensus        77 ~~LlVlDdv~~~   88 (180)
                      -|++.||.++..
T Consensus       271 aciiffdeidai  282 (435)
T KOG0729|consen  271 ACIIFFDEIDAI  282 (435)
T ss_pred             eEEEEeeccccc
Confidence            799999998764

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=95.48  E-value=0.083  Score=46.38  Aligned_cols=33  Identities=12%  Similarity=0.174  Sum_probs=23.7

Q ss_pred             ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006          105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP  137 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P  137 (180)
                      ..+.++..+.++-.+++...          ....+++.+.|.-
T Consensus       339 ~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~  381 (733)
T TIGR01243       339 REIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFV  381 (733)
T ss_pred             EEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCC
Confidence            35667777888888888765          3667888887764

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=95.46  E-value=0.1  Score=39.18  Aligned_cols=44  Identities=18%  Similarity=0.294  Sum_probs=26.6

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVG   50 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~   50 (180)
                      .+|+||||||.+++....  ++. ..+++++  ...+..++++.+ ++++
T Consensus        32 ~~G~GKTtl~~~~~~~~~--~~g-~~~~yi~--~e~~~~~~~~~~-~~~g   75 (230)
T PRK08533         32 DESTGKSILSQRLAYGFL--QNG-YSVSYVS--TQLTTTEFIKQM-MSLG   75 (230)
T ss_pred             CCCCCHHHHHHHHHHHHH--hCC-CcEEEEe--CCCCHHHHHHHH-HHhC
Confidence            379999999987776532  122 3456665  333556666665 3444

>PRK06835 DNA replication protein DnaC; Validated

Probab=95.46  E-value=0.048  Score=43.17  Aligned_cols=27  Identities=30%  Similarity=0.354  Sum_probs=19.5

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEE
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIV   31 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~   31 (180)
                      +|+|||.||..+++.+  ....+ .+++++
T Consensus       192 ~GtGKThLa~aIa~~l--~~~g~-~V~y~t  218 (329)
T PRK06835        192 TGTGKTFLSNCIAKEL--LDRGK-SVIYRT  218 (329)
T ss_pred             CCCcHHHHHHHHHHHH--HHCCC-eEEEEE
Confidence            6999999999999985  22333 455554

>PRK08233 hypothetical protein; Provisional

Probab=95.43  E-value=0.0095  Score=42.53  Aligned_cols=17  Identities=41%  Similarity=0.647  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+||||||..++..+
T Consensus        11 ~~GsGKtTla~~L~~~l   27 (182)
T PRK08233         11 VSGGGKTTLTERLTHKL   27 (182)
T ss_pred             CCCCCHHHHHHHHHhhC
Confidence            47999999999999876

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=95.43  E-value=0.0096  Score=42.01  Aligned_cols=18  Identities=50%  Similarity=0.634  Sum_probs=16.2

Q ss_pred             CCCCcHHHHHHHHHcccc
Q 046006            1 MGGVGKTTLLTHINNKFL   18 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~   18 (180)
                      |||+||||+++.+.+.+.
T Consensus        13 ~PGvGKtTl~~ki~e~L~   30 (179)
T COG1618          13 RPGVGKTTLVLKIAEKLR   30 (179)
T ss_pred             CCCccHHHHHHHHHHHHH
Confidence            699999999999998863

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=95.41  E-value=0.061  Score=44.86  Aligned_cols=81  Identities=14%  Similarity=0.068  Sum_probs=49.1

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------------CCCCCcChHHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDG------------DSWKNKNSEEKALE   68 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------~~~~~~~~~~~~~~   68 (180)
                      .+|+|||||+.+++....   ..-..+++++..+  +..++.... +.++.+..            ..+...+.++....
T Consensus       271 ~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~~~~  344 (484)
T TIGR02655       271 ATGTGKTLLVSKFLENAC---ANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESAGLEDHLQI  344 (484)
T ss_pred             CCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccCChHHHHHH
Confidence            489999999999988742   2234566665443  445555543 44443210            01122345777777


Q ss_pred             HHHHhCC-CcEEEEEeCCCC
Q 046006           69 IFRFLSK-KKFVLLLDDKWE   87 (180)
Q Consensus        69 l~~~L~~-k~~LlVlDdv~~   87 (180)
                      +++.+.. +.-.+|+|.+..
T Consensus       345 i~~~i~~~~~~~vvIDsi~~  364 (484)
T TIGR02655       345 IKSEIADFKPARIAIDSLSA  364 (484)
T ss_pred             HHHHHHHcCCCEEEEcCHHH
Confidence            7777753 566899998753

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.40  E-value=0.41  Score=41.31  Aligned_cols=38  Identities=13%  Similarity=0.065  Sum_probs=27.9

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALIT  142 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~  142 (180)
                      ..+++..++.++....+.+.           .+..|++.++|.+..+..
T Consensus       173 ~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~  221 (620)
T PRK14948        173 QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAES  221 (620)
T ss_pred             eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence            46778888888887766653           677888899997764443

>TIGR01039 atpD ATP synthase, F1 beta subunit

Probab=95.38  E-value=0.048  Score=44.91  Aligned_cols=85  Identities=14%  Similarity=0.214  Sum_probs=49.8

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChHH------HHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSEE------KALEIFR   71 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~------~~~~l~~   71 (180)
                      +|+|||+|+..+....  ..++-+.++++-+++.. ...+++.++...=..+..   ......+...      ..-.+.+
T Consensus       152 ~G~GKt~L~~~~~~~~--~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAE  229 (461)
T TIGR01039       152 AGVGKTVLIQELINNI--AKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTGLTMAE  229 (461)
T ss_pred             CCCChHHHHHHHHHHH--HhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            6999999999988763  22333467777777654 556676666543211100   0011122111      2334556


Q ss_pred             Hh---CCCcEEEEEeCCCCc
Q 046006           72 FL---SKKKFVLLLDDKWER   88 (180)
Q Consensus        72 ~L---~~k~~LlVlDdv~~~   88 (180)
                      ++   +++.+||++||+-..
T Consensus       230 yfrd~~G~~VLll~DslTR~  249 (461)
T TIGR01039       230 YFRDEQGQDVLLFIDNIFRF  249 (461)
T ss_pred             HHHHhcCCeeEEEecchhHH
Confidence            66   468999999998754

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.

>PRK09519 recA DNA recombination protein RecA; Reviewed

Probab=95.33  E-value=0.062  Score=47.15  Aligned_cols=80  Identities=15%  Similarity=0.059  Sum_probs=51.1

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCCcChHHHHHHHHHHhC-CCc
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD--SWKNKNSEEKALEIFRFLS-KKK   77 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~~L~-~k~   77 (180)
                      .+|+||||||.+++....   ..-..++|+.....++.     ..++.++.+...  .....+.++....+.+.++ ++.
T Consensus        68 ~~GsGKTtLal~~~~~a~---~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~  139 (790)
T PRK09519         68 PESSGKTTVALHAVANAQ---AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGAL  139 (790)
T ss_pred             CCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCC
Confidence            379999999988766522   22245788887766663     366777664111  1123445666666666664 467


Q ss_pred             EEEEEeCCCCc
Q 046006           78 FVLLLDDKWER   88 (180)
Q Consensus        78 ~LlVlDdv~~~   88 (180)
                      -|+|+|.+...
T Consensus       140 ~LVVIDSI~aL  150 (790)
T PRK09519        140 DIVVIDSVAAL  150 (790)
T ss_pred             eEEEEcchhhh
Confidence            79999998643

>TIGR00416 sms DNA repair protein RadA

Probab=95.31  E-value=0.048  Score=45.13  Aligned_cols=78  Identities=19%  Similarity=0.258  Sum_probs=42.2

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC--CCCCCcChHHHHHHHHHHhCCCcEE
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDG--DSWKNKNSEEKALEIFRFLSKKKFV   79 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~k~~L   79 (180)
                      +|+|||||+.+++....   ..-..++|++..++  ..++.. -++.++....  .-....+.+++...+.   +.+.-+
T Consensus       103 pGsGKTTL~lq~a~~~a---~~g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i~---~~~~~~  173 (454)
T TIGR00416       103 PGIGKSTLLLQVACQLA---KNQMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNWEQICANIE---EENPQA  173 (454)
T ss_pred             CCCCHHHHHHHHHHHHH---hcCCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHHH---hcCCcE
Confidence            79999999999987753   11134677765443  333322 2234443200  0112234444443332   235678


Q ss_pred             EEEeCCCCc
Q 046006           80 LLLDDKWER   88 (180)
Q Consensus        80 lVlDdv~~~   88 (180)
                      +|+|.+...
T Consensus       174 vVIDSIq~l  182 (454)
T TIGR00416       174 CVIDSIQTL  182 (454)
T ss_pred             EEEecchhh
Confidence            999998643

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=95.30  E-value=0.028  Score=40.47  Aligned_cols=17  Identities=35%  Similarity=0.559  Sum_probs=15.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .||+||||+|+.+.+.+
T Consensus         8 ~pGaGK~T~A~~La~~~   24 (178)
T COG0563           8 PPGAGKSTLAKKLAKKL   24 (178)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            48999999999999985

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=95.29  E-value=0.056  Score=44.44  Aligned_cols=83  Identities=18%  Similarity=0.109  Sum_probs=42.7

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---CCCCCCcCh-----HHHHHHHHHHh
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLD---GDSWKNKNS-----EEKALEIFRFL   73 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~-----~~~~~~l~~~L   73 (180)
                      +|+|||||++.+....    ....+++++.-....++.++....+.......   ....+....     ....-.+.+++
T Consensus       174 SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a~~iAEyf  249 (450)
T PRK06002        174 SGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTATAIAEYF  249 (450)
T ss_pred             CCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence            6999999999887662    22334555443233455554444433321100   000111111     11223344444


Q ss_pred             --CCCcEEEEEeCCCCc
Q 046006           74 --SKKKFVLLLDDKWER   88 (180)
Q Consensus        74 --~~k~~LlVlDdv~~~   88 (180)
                        +++.+|+++||+-..
T Consensus       250 rd~G~~Vll~~DslTr~  266 (450)
T PRK06002        250 RDRGENVLLIVDSVTRF  266 (450)
T ss_pred             HHcCCCEEEeccchHHH
Confidence              488999999998654

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=95.29  E-value=0.16  Score=43.97  Aligned_cols=72  Identities=15%  Similarity=0.150  Sum_probs=39.9

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL   80 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll   80 (180)
                      +||+|||++|+.++.-+.  +.+|.    ++++.-.+..++-        .. .+..-..-+...++.|++.=.. +=|+
T Consensus       446 PPGVGKTSI~kSIA~ALn--RkFfR----fSvGG~tDvAeIk--------GH-RRTYVGAMPGkiIq~LK~v~t~-NPli  509 (906)
T KOG2004|consen  446 PPGVGKTSIAKSIARALN--RKFFR----FSVGGMTDVAEIK--------GH-RRTYVGAMPGKIIQCLKKVKTE-NPLI  509 (906)
T ss_pred             CCCCCcccHHHHHHHHhC--CceEE----EeccccccHHhhc--------cc-ceeeeccCChHHHHHHHhhCCC-CceE
Confidence            589999999999998863  22221    3445444444431        11 1111223344555555544333 4477


Q ss_pred             EEeCCCCc
Q 046006           81 LLDDKWER   88 (180)
Q Consensus        81 VlDdv~~~   88 (180)
                      .||.|+..
T Consensus       510 LiDEvDKl  517 (906)
T KOG2004|consen  510 LIDEVDKL  517 (906)
T ss_pred             Eeehhhhh
Confidence            78988864

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=95.29  E-value=0.04  Score=44.99  Aligned_cols=82  Identities=23%  Similarity=0.280  Sum_probs=44.2

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCC---CCCCCcChHH------HHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDG---DSWKNKNSEE------KALEIFR   71 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~------~~~~l~~   71 (180)
                      +|+|||||.+.++...    .. +..+...+++ .....++.+..+..-+....   ......+...      ..-.+.+
T Consensus       149 sG~GKTtLl~~I~~~~----~~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a~~iAE  223 (418)
T TIGR03498       149 SGVGKSTLLSMLARNT----DA-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAE  223 (418)
T ss_pred             CCCChHHHHHHHhCCC----CC-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            6999999999888773    22 3333333443 34455566655443222100   0011111111      2233555


Q ss_pred             Hh--CCCcEEEEEeCCCCc
Q 046006           72 FL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        72 ~L--~~k~~LlVlDdv~~~   88 (180)
                      ++  +++.+|+++||+-..
T Consensus       224 yfrd~G~~Vll~~DslTr~  242 (418)
T TIGR03498       224 YFRDQGKDVLLLMDSVTRF  242 (418)
T ss_pred             HHHHcCCCEEEeccchhHH
Confidence            55  578999999998654

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=95.26  E-value=0.048  Score=40.45  Aligned_cols=69  Identities=13%  Similarity=0.098  Sum_probs=35.6

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCc
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKK   77 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~   77 (180)
                      +|+||||+|+.++..+.   ...  +.-++...-+. ..-........... ...+..-+.+-+.+.|...+++++
T Consensus        17 SgSGKTTva~~l~~~~~---~~~--~~~I~~D~YYk-~~~~~~~~~~~~~n-~d~p~A~D~dLl~~~L~~L~~g~~   85 (218)
T COG0572          17 SGSGKTTVAKELSEQLG---VEK--VVVISLDDYYK-DQSHLPFEERNKIN-YDHPEAFDLDLLIEHLKDLKQGKP   85 (218)
T ss_pred             CCCCHHHHHHHHHHHhC---cCc--ceEeecccccc-chhhcCHhhcCCcC-ccChhhhcHHHHHHHHHHHHcCCc
Confidence            69999999999999874   221  11122111111 00000111111111 233455667777777777777776

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=95.26  E-value=0.42  Score=40.73  Aligned_cols=37  Identities=19%  Similarity=0.247  Sum_probs=28.3

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALI  141 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~  141 (180)
                      ..++..+++.++-.+.+.+.           .+..|++.++|.+-.+.
T Consensus       171 ~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~al  218 (563)
T PRK06647        171 QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAY  218 (563)
T ss_pred             eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence            46788899999888777765           57778889999775443

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=95.24  E-value=0.034  Score=42.76  Aligned_cols=18  Identities=22%  Similarity=0.217  Sum_probs=15.4

Q ss_pred             CCCCcHHHHHHHHHcccc
Q 046006            1 MGGVGKTTLLTHINNKFL   18 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~   18 (180)
                      .||+||||+|+++...+.
T Consensus         9 ~P~SGKTt~a~~L~~~~~   26 (270)
T PF08433_consen    9 LPCSGKTTRAKELKKYLE   26 (270)
T ss_dssp             -TTSSHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHH
Confidence            489999999999998864

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=95.21  E-value=0.096  Score=40.01  Aligned_cols=31  Identities=13%  Similarity=0.263  Sum_probs=22.2

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK   34 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~   34 (180)
                      .||+|||++|.+++....   ..-..+++++...
T Consensus        44 ~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee   74 (259)
T TIGR03878        44 VSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES   74 (259)
T ss_pred             CCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence            489999999999877632   2234677887764

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=95.19  E-value=0.15  Score=38.22  Aligned_cols=42  Identities=14%  Similarity=0.179  Sum_probs=26.2

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVG   46 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~   46 (180)
                      .+|+|||++|.+++.+..  .++=..++|++...  +..++...++
T Consensus        21 ~~G~GKT~~~~~~~~~~~--~~~g~~vly~s~E~--~~~~~~~r~~   62 (242)
T cd00984          21 RPSMGKTAFALNIAENIA--KKQGKPVLFFSLEM--SKEQLLQRLL   62 (242)
T ss_pred             CCCCCHHHHHHHHHHHHH--HhCCCceEEEeCCC--CHHHHHHHHH
Confidence            379999999999988742  23223566766443  4444444443

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit

Probab=95.18  E-value=0.051  Score=45.39  Aligned_cols=82  Identities=12%  Similarity=0.229  Sum_probs=46.0

Q ss_pred             CCCcHHHHH-HHHHcccccccCCCCeE-EEEEeCCCC-CHHHHHHHHHHHhCCCCCC---CCCCcChH-H-----HHHHH
Q 046006            2 GGVGKTTLL-THINNKFLVSSTDFDCV-IWIVVSKDL-QLEKIQEIVGKKVGLLDGD---SWKNKNSE-E-----KALEI   69 (180)
Q Consensus         2 gGiGKTtLA-~~~~~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~~~---~~~~~~~~-~-----~~~~l   69 (180)
                      .|+|||+|| ..+.++     ..-|.+ +++-+++.. ...++.+.+...=.....-   .....+.. +     ....+
T Consensus       170 ~g~GKt~Lal~~i~~~-----~~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~a~~~a~ai  244 (501)
T TIGR00962       170 RQTGKTAVAIDTIINQ-----KDSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQYLAPYTGCTM  244 (501)
T ss_pred             CCCCccHHHHHHHHhh-----cCCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHHHHHHHHHHH
Confidence            499999997 456565     234564 778888765 4566666665532221000   01111111 1     12334


Q ss_pred             HHHh--CCCcEEEEEeCCCCc
Q 046006           70 FRFL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        70 ~~~L--~~k~~LlVlDdv~~~   88 (180)
                      .+++  +++.+|+|+||+...
T Consensus       245 AEyfrd~G~~VLlv~Ddltr~  265 (501)
T TIGR00962       245 AEYFRDNGKHALIIYDDLSKH  265 (501)
T ss_pred             HHHHHHcCCCEEEEecchHHH
Confidence            4444  478999999998754

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=95.18  E-value=0.07  Score=41.63  Aligned_cols=17  Identities=35%  Similarity=0.448  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|..+++.+
T Consensus        32 p~G~Gktt~a~~lA~~l   48 (325)
T COG0470          32 PPGVGKTTAALALAKEL   48 (325)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            47999999999998875

>TIGR00763 lon ATP-dependent protease La

Probab=95.17  E-value=0.033  Score=49.16  Aligned_cols=17  Identities=41%  Similarity=0.499  Sum_probs=15.5

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||++|+.+++.+
T Consensus       355 ppG~GKT~lAk~iA~~l  371 (775)
T TIGR00763       355 PPGVGKTSLGKSIAKAL  371 (775)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            48999999999999885

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PRK06762 hypothetical protein; Provisional

Probab=95.15  E-value=0.012  Score=41.52  Aligned_cols=17  Identities=29%  Similarity=0.601  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        10 ~~GsGKST~A~~L~~~l   26 (166)
T PRK06762         10 NSGSGKTTIAKQLQERL   26 (166)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999998875

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=95.13  E-value=0.5  Score=36.69  Aligned_cols=40  Identities=15%  Similarity=0.182  Sum_probs=30.4

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIG  144 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~  144 (180)
                      -+.+++..+.+|-.++..+.           .+.+|+++..|-|--..-+-
T Consensus       174 i~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLL  224 (332)
T COG2255         174 IIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLL  224 (332)
T ss_pred             CeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHH
Confidence            35678888888888887776           78899999999996443333

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=95.12  E-value=0.083  Score=47.17  Aligned_cols=77  Identities=21%  Similarity=0.227  Sum_probs=38.1

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL   80 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll   80 (180)
                      ++|+|||++|+.+...+.   ..-...+-++++.......    +.+.++.+ ...........+...++   +....++
T Consensus       603 p~GvGKt~lA~~La~~l~---~~~~~~i~~d~s~~~~~~~----~~~l~g~~-~g~~g~~~~g~l~~~v~---~~p~~vl  671 (852)
T TIGR03346       603 PTGVGKTELAKALAEFLF---DDEDAMVRIDMSEYMEKHS----VARLIGAP-PGYVGYEEGGQLTEAVR---RKPYSVV  671 (852)
T ss_pred             CCCCCHHHHHHHHHHHhc---CCCCcEEEEechhhcccch----HHHhcCCC-CCccCcccccHHHHHHH---cCCCcEE
Confidence            479999999999998742   2222344455554222111    11223322 11111111222333322   2334599


Q ss_pred             EEeCCCCc
Q 046006           81 LLDDKWER   88 (180)
Q Consensus        81 VlDdv~~~   88 (180)
                      +||++...
T Consensus       672 llDeieka  679 (852)
T TIGR03346       672 LFDEVEKA  679 (852)
T ss_pred             EEeccccC
Confidence            99999865

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=95.11  E-value=0.025  Score=39.96  Aligned_cols=38  Identities=18%  Similarity=0.309  Sum_probs=27.7

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLL   52 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~   52 (180)
                      +||+||||+|+.+++++.     .   -.+      +.-.+++++++..+.+
T Consensus         8 ~pGsG~TTva~~lAe~~g-----l---~~v------saG~iFR~~A~e~gms   45 (179)
T COG1102           8 LPGSGKTTVARELAEHLG-----L---KLV------SAGTIFREMARERGMS   45 (179)
T ss_pred             CCCCChhHHHHHHHHHhC-----C---cee------eccHHHHHHHHHcCCC
Confidence            589999999999999863     1   111      3346788888887764

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=95.09  E-value=0.088  Score=39.40  Aligned_cols=34  Identities=26%  Similarity=0.293  Sum_probs=22.2

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQL   38 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~   38 (180)
                      ||.||||++..++..+.   .+-..+.-+....+..+
T Consensus        11 GGaGKTT~~~~LAs~la---~~G~~V~lIDaDpn~pl   44 (231)
T PF07015_consen   11 GGAGKTTAAMALASELA---ARGARVALIDADPNQPL   44 (231)
T ss_pred             CCCcHHHHHHHHHHHHH---HCCCeEEEEeCCCCCcH
Confidence            89999999999998863   22234445554443333

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>PRK00625 shikimate kinase; Provisional

Probab=95.09  E-value=0.013  Score=42.01  Aligned_cols=17  Identities=24%  Similarity=0.319  Sum_probs=15.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      |+|+||||+++.+..++
T Consensus         8 ~pGsGKTT~~k~La~~l   24 (173)
T PRK00625          8 LPTVGKTSFGKALAKFL   24 (173)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            68999999999998874

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.08  E-value=0.021  Score=48.37  Aligned_cols=63  Identities=22%  Similarity=0.218  Sum_probs=36.8

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC-CCcEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS-KKKFV   79 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~-~k~~L   79 (180)
                      +||+|||-||++++|.-.   -.     |+++-.+        +++...-         ...+..++.+.+.-+ +-+|.
T Consensus       553 PPGCGKTLlAKAVANEag---~N-----FisVKGP--------ELlNkYV---------GESErAVR~vFqRAR~saPCV  607 (802)
T KOG0733|consen  553 PPGCGKTLLAKAVANEAG---AN-----FISVKGP--------ELLNKYV---------GESERAVRQVFQRARASAPCV  607 (802)
T ss_pred             CCCccHHHHHHHHhhhcc---Cc-----eEeecCH--------HHHHHHh---------hhHHHHHHHHHHHhhcCCCeE
Confidence            589999999999999821   22     3333221        1111110         112333444444443 57999


Q ss_pred             EEEeCCCCc
Q 046006           80 LLLDDKWER   88 (180)
Q Consensus        80 lVlDdv~~~   88 (180)
                      |.||.++..
T Consensus       608 IFFDEiDaL  616 (802)
T KOG0733|consen  608 IFFDEIDAL  616 (802)
T ss_pred             EEecchhhc
Confidence            999999875

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=95.08  E-value=0.16  Score=38.13  Aligned_cols=17  Identities=35%  Similarity=0.569  Sum_probs=14.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +||+|||+||.+++...
T Consensus         9 ~~G~GKS~lal~la~~v   25 (239)
T cd01125           9 PGGTGKSSLLLVLALAM   25 (239)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            58999999999998753

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=95.07  E-value=0.018  Score=40.48  Aligned_cols=82  Identities=17%  Similarity=0.096  Sum_probs=41.8

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEE-------eCC--CCCHHH---H---HHHHHHHhCCCCCC---CCCCcCh
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIV-------VSK--DLQLEK---I---QEIVGKKVGLLDGD---SWKNKNS   62 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~-------~~~--~~~~~~---~---~~~i~~~l~~~~~~---~~~~~~~   62 (180)
                      ++|+||||||+.+...+.   ..-..++++.       ++.  .++..+   -   +..+++.+..+ ..   .......
T Consensus        10 lsGsGKtTlA~~L~~~L~---~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~-G~ivIva~isp~   85 (156)
T PF01583_consen   10 LSGSGKTTLARALERRLF---ARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQ-GIIVIVAFISPY   85 (156)
T ss_dssp             STTSSHHHHHHHHHHHHH---HTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHT-TSEEEEE----S
T ss_pred             CCCCCHHHHHHHHHHHHH---HcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhC-CCeEEEeeccCc
Confidence            589999999999999874   3334566664       222  223222   1   12222222111 00   0112234


Q ss_pred             HHHHHHHHHHhCCCcEEEEEeCCC
Q 046006           63 EEKALEIFRFLSKKKFVLLLDDKW   86 (180)
Q Consensus        63 ~~~~~~l~~~L~~k~~LlVlDdv~   86 (180)
                      .+..+..++.+.+.+|+-|.=++.
T Consensus        86 ~~~R~~~R~~~~~~~f~eVyv~~~  109 (156)
T PF01583_consen   86 REDREWARELIPNERFIEVYVDCP  109 (156)
T ss_dssp             HHHHHHHHHHHHTTEEEEEEEES-
T ss_pred             hHHHHHHHHhCCcCceEEEEeCCC
Confidence            556666677776668887776663

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=95.07  E-value=0.18  Score=36.11  Aligned_cols=82  Identities=21%  Similarity=0.274  Sum_probs=44.9

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEE---eCCCCCHHH------HHHHHHHHhCCCCC--CCCCCcC-hHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIV---VSKDLQLEK------IQEIVGKKVGLLDG--DSWKNKN-SEEKALEI   69 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~---~~~~~~~~~------~~~~i~~~l~~~~~--~~~~~~~-~~~~~~~l   69 (180)
                      .|+|||||.+.++...    ....+.++++   +. ..+...      ...++++.++....  .....-+ .+...-.+
T Consensus        34 nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~l  108 (180)
T cd03214          34 NGAGKSTLLKTLAGLL----KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQRVLL  108 (180)
T ss_pred             CCCCHHHHHHHHhCCC----CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHH
Confidence            6999999999998874    3445666553   22 112222      12224555554311  1111222 22333445


Q ss_pred             HHHhCCCcEEEEEeCCCCc
Q 046006           70 FRFLSKKKFVLLLDDKWER   88 (180)
Q Consensus        70 ~~~L~~k~~LlVlDdv~~~   88 (180)
                      ...+-..+-++++|+--..
T Consensus       109 aral~~~p~llllDEP~~~  127 (180)
T cd03214         109 ARALAQEPPILLLDEPTSH  127 (180)
T ss_pred             HHHHhcCCCEEEEeCCccC
Confidence            5566677889999996443

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=95.05  E-value=1.2  Score=35.27  Aligned_cols=38  Identities=16%  Similarity=0.148  Sum_probs=30.6

Q ss_pred             ceEeecCCChhhhHHHHHHH-----HHHHHHHHcCCChHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----LAQTVAKKCVGLPLALIT  142 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----~~~~i~~~c~g~PLal~~  142 (180)
                      ..+.+.+++.+++.+.+.+.     .+..++..++|.|+....
T Consensus       165 q~i~~~~~~~~~~~~~L~~~~~~~~~a~~~~~l~~G~p~~A~~  207 (319)
T PRK08769        165 QRLEFKLPPAHEALAWLLAQGVSERAAQEALDAARGHPGLAAQ  207 (319)
T ss_pred             eEeeCCCcCHHHHHHHHHHcCCChHHHHHHHHHcCCCHHHHHH
Confidence            56789999999999888766     455789999999985543

>PTZ00088 adenylate kinase 1; Provisional

Probab=95.05  E-value=0.017  Score=43.27  Aligned_cols=17  Identities=35%  Similarity=0.417  Sum_probs=15.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +||+||||+|+.++..+
T Consensus        14 ~PGsGK~T~a~~La~~~   30 (229)
T PTZ00088         14 APGVGKGTFAEILSKKE   30 (229)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999998875

>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A

Probab=95.05  E-value=0.41  Score=38.29  Aligned_cols=40  Identities=20%  Similarity=0.304  Sum_probs=29.2

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVG   46 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~   46 (180)
                      .|+|||+|+++++++     .+-+.++++-+++.. ...+++.++-
T Consensus       166 ~G~GKT~L~~~Iak~-----~~~dvvVyv~iGERg~Ev~e~l~ef~  206 (369)
T cd01134         166 FGCGKTVIQQSLSKY-----SNSDIVIYVGCGERGNEMTEVLEEFP  206 (369)
T ss_pred             CCCChHHHHHHHHhC-----CCCCEEEEEEeCCChHHHHHHHHHHH
Confidence            699999999999998     234578888887754 4555555543

These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=95.03  E-value=0.016  Score=34.85  Aligned_cols=17  Identities=24%  Similarity=0.481  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+||||+|+.+.+.+
T Consensus         7 ~~gsGKst~~~~l~~~l   23 (69)
T cd02019           7 GSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999998874

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.00  E-value=0.075  Score=43.41  Aligned_cols=17  Identities=35%  Similarity=0.575  Sum_probs=14.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||++.+++..+
T Consensus       231 ptGvGKTTtaaKLA~~~  247 (432)
T PRK12724        231 PTGSGKTTSIAKLAAKY  247 (432)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            47999999999998763

>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []

Probab=95.00  E-value=0.089  Score=41.48  Aligned_cols=79  Identities=15%  Similarity=0.091  Sum_probs=45.7

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCCcChHHHHHHHHHHhCC-CcE
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD--SWKNKNSEEKALEIFRFLSK-KKF   78 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~~L~~-k~~   78 (180)
                      .|+||||||.++.....   ..-..++|+.....++..     .++.++.+...  -..+.+.++....+.+.++. ..-
T Consensus        62 ~ssGKttLaL~~ia~~q---~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg~~~  133 (322)
T PF00154_consen   62 ESSGKTTLALHAIAEAQ---KQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAEQLIRSGAVD  133 (322)
T ss_dssp             TTSSHHHHHHHHHHHHH---HTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTTSES
T ss_pred             CCCchhhhHHHHHHhhh---cccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHHHHhhccccc
Confidence            68999999999987742   233467888877665553     33455543111  11234566777777776754 456


Q ss_pred             EEEEeCCCCc
Q 046006           79 VLLLDDKWER   88 (180)
Q Consensus        79 LlVlDdv~~~   88 (180)
                      ++|+|-|...
T Consensus       134 lVVvDSv~al  143 (322)
T PF00154_consen  134 LVVVDSVAAL  143 (322)
T ss_dssp             EEEEE-CTT-
T ss_pred             EEEEecCccc
Confidence            8999998765

In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=94.97  E-value=1.4  Score=34.90  Aligned_cols=34  Identities=18%  Similarity=0.261  Sum_probs=27.8

Q ss_pred             ceEeecCCChhhhHHHHHHH------HHHHHHHHcCCChH
Q 046006          105 KNFKVECLSDNDAWELLRQK------LAQTVAKKCVGLPL  138 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~------~~~~i~~~c~g~PL  138 (180)
                      ..+.+.++++++..+.+.+.      .+...+..++|.|+
T Consensus       159 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~l~~g~p~  198 (325)
T PRK06871        159 QTWLIHPPEEQQALDWLQAQSSAEISEILTALRINYGRPL  198 (325)
T ss_pred             eEEeCCCCCHHHHHHHHHHHhccChHHHHHHHHHcCCCHH
Confidence            57889999999999888875      34556778999996

>PRK14527 adenylate kinase; Provisional

Probab=94.97  E-value=0.034  Score=40.26  Aligned_cols=17  Identities=24%  Similarity=0.354  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.++..+
T Consensus        14 ~pGsGKsT~a~~La~~~   30 (191)
T PRK14527         14 PPGAGKGTQAERLAQEL   30 (191)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            48999999999998775

>CHL00059 atpA ATP synthase CF1 alpha subunit

Probab=94.96  E-value=0.082  Score=43.84  Aligned_cols=82  Identities=10%  Similarity=0.245  Sum_probs=45.0

Q ss_pred             CCCcHHHHHHH-HHcccccccCCCCeE-EEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcC-hHH-----HHHHH
Q 046006            2 GGVGKTTLLTH-INNKFLVSSTDFDCV-IWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKN-SEE-----KALEI   69 (180)
Q Consensus         2 gGiGKTtLA~~-~~~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~-~~~-----~~~~l   69 (180)
                      .|+|||+||.. +.++     ..-|.+ +++-+++.. ...++...+...=.....   ......+ ..+     ....+
T Consensus       150 ~g~GKt~Lal~~I~~q-----~~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ap~~a~ai  224 (485)
T CHL00059        150 RQTGKTAVATDTILNQ-----KGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAAL  224 (485)
T ss_pred             CCCCHHHHHHHHHHhc-----ccCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHHHHHHhhH
Confidence            59999999765 5554     233545 777787655 555666666543221100   0011111 111     11224


Q ss_pred             HHHh--CCCcEEEEEeCCCCc
Q 046006           70 FRFL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        70 ~~~L--~~k~~LlVlDdv~~~   88 (180)
                      .+++  +++++|+|+||+-..
T Consensus       225 AEyfr~~G~~VLlv~DdlTr~  245 (485)
T CHL00059        225 AEYFMYRGRHTLIIYDDLSKQ  245 (485)
T ss_pred             HHHHHHcCCCEEEEEcChhHH
Confidence            4444  578999999998754

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=94.96  E-value=0.12  Score=42.43  Aligned_cols=82  Identities=20%  Similarity=0.242  Sum_probs=42.8

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCC------CCC---CCCcChHHHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLD------GDS---WKNKNSEEKALEIFR   71 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~------~~~---~~~~~~~~~~~~l~~   71 (180)
                      .|+|||||++.+....     ..+..+...++. .....++....+..-+...      ..+   .......+....+.+
T Consensus       164 sGaGKSTLl~~I~g~~-----~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a~e~a~~iAE  238 (434)
T PRK07196        164 SGVGKSVLLGMITRYT-----QADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIAT  238 (434)
T ss_pred             CCCCccHHHHHHhccc-----CCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHHHHHHHHHHH
Confidence            6999999999988763     223333333433 2234444434443322110      000   011112233344455


Q ss_pred             Hh--CCCcEEEEEeCCCCc
Q 046006           72 FL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        72 ~L--~~k~~LlVlDdv~~~   88 (180)
                      ++  +++.+||++||+-..
T Consensus       239 yfr~~g~~Vll~~Dsltr~  257 (434)
T PRK07196        239 YYRDKGHDVLLLVDSLTRY  257 (434)
T ss_pred             HhhhccCCEEEeecchhHH
Confidence            54  478999999998654

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=94.95  E-value=0.13  Score=42.39  Aligned_cols=82  Identities=20%  Similarity=0.215  Sum_probs=45.4

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcC-hH-----HHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKN-SE-----EKALEIFR   71 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~-~~-----~~~~~l~~   71 (180)
                      .|+|||||++.+....     ..+.++...++... ...++...+...-+....   ......+ ..     .....+.+
T Consensus       177 sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~~a~aiAE  251 (451)
T PRK05688        177 TGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAE  251 (451)
T ss_pred             CCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            6999999999998762     23454444455443 455555555544322100   0011111 11     12233455


Q ss_pred             Hh--CCCcEEEEEeCCCCc
Q 046006           72 FL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        72 ~L--~~k~~LlVlDdv~~~   88 (180)
                      ++  +++++||++||+-..
T Consensus       252 yfrd~G~~VLl~~DslTR~  270 (451)
T PRK05688        252 YFRDKGKNVLLLMDSLTRF  270 (451)
T ss_pred             HHHHCCCCEEEEecchhHH
Confidence            55  588999999998654

>PRK00279 adk adenylate kinase; Reviewed

Probab=94.92  E-value=0.037  Score=40.90  Aligned_cols=17  Identities=35%  Similarity=0.471  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +||+||||+|+.++..+
T Consensus         8 ~pGsGKsT~a~~la~~~   24 (215)
T PRK00279          8 PPGAGKGTQAKFIAEKY   24 (215)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999998774

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=94.90  E-value=1.4  Score=34.80  Aligned_cols=39  Identities=21%  Similarity=0.296  Sum_probs=31.5

Q ss_pred             ceEeecCCChhhhHHHHHHH---HHHHHHHHcCCChHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK---LAQTVAKKCVGLPLALITI  143 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~---~~~~i~~~c~g~PLal~~~  143 (180)
                      ..+.+.+++.++..+.+.+.   ....++..++|.|+....+
T Consensus       160 q~~~~~~~~~~~~~~~L~~~~~~~~~~~l~l~~G~p~~A~~~  201 (319)
T PRK06090        160 QQWVVTPPSTAQAMQWLKGQGITVPAYALKLNMGSPLKTLAM  201 (319)
T ss_pred             eeEeCCCCCHHHHHHHHHHcCCchHHHHHHHcCCCHHHHHHH
Confidence            57889999999999998776   4567788999999866443

>PRK05922 type III secretion system ATPase; Validated

Probab=94.89  E-value=0.096  Score=42.98  Aligned_cols=82  Identities=13%  Similarity=0.203  Sum_probs=45.0

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCC---CCCCCcChH------HHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD-LQLEKIQEIVGKKVGLLDG---DSWKNKNSE------EKALEIFR   71 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~------~~~~~l~~   71 (180)
                      .|+|||||.+.++...     ..+.....-+++. ....+.+.+..........   ......+..      ...-.+.+
T Consensus       166 nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~a~tiAE  240 (434)
T PRK05922        166 PGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAMTIAE  240 (434)
T ss_pred             CCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            6999999999998872     2344444444443 3344555555443322200   001111111      12233455


Q ss_pred             Hh--CCCcEEEEEeCCCCc
Q 046006           72 FL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        72 ~L--~~k~~LlVlDdv~~~   88 (180)
                      ++  +++++|+++||+-..
T Consensus       241 yfrd~G~~VLl~~DslTR~  259 (434)
T PRK05922        241 YFRDQGHRVLFIMDSLSRW  259 (434)
T ss_pred             HHHHcCCCEEEeccchhHH
Confidence            55  589999999998764

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.89  E-value=0.16  Score=41.23  Aligned_cols=83  Identities=19%  Similarity=0.170  Sum_probs=46.2

Q ss_pred             CCCCcHHHHHHHHHccccccc-CCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcE
Q 046006            1 MGGVGKTTLLTHINNKFLVSS-TDFDCVIWIVVSKD-LQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKF   78 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~-~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~   78 (180)
                      ..|+||||.+..++..+.... .+-..+..++.... .....-+...++.++.+   .....+.++....+.+.  .+.-
T Consensus       182 ptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvp---v~~~~~~~~l~~~L~~~--~~~D  256 (388)
T PRK12723        182 PTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP---VKAIESFKDLKEEITQS--KDFD  256 (388)
T ss_pred             CCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcc---eEeeCcHHHHHHHHHHh--CCCC
Confidence            369999999999987753211 11234555655532 23333466666666654   12223344444444433  3456


Q ss_pred             EEEEeCCCCc
Q 046006           79 VLLLDDKWER   88 (180)
Q Consensus        79 LlVlDdv~~~   88 (180)
                      ++++|.+-..
T Consensus       257 lVLIDTaGr~  266 (388)
T PRK12723        257 LVLVDTIGKS  266 (388)
T ss_pred             EEEEcCCCCC
Confidence            8888887654

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=94.87  E-value=0.13  Score=42.31  Aligned_cols=83  Identities=19%  Similarity=0.188  Sum_probs=41.7

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---CCCCCcCh------HHHHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDG---DSWKNKNS------EEKALEIFRF   72 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~------~~~~~~l~~~   72 (180)
                      +|+|||||++.+....    ..-.+++++.--+.....++....+..-+....   ......+.      ....-.+.++
T Consensus       167 sG~GKStLl~~I~~~~----~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~~~a~~iAEy  242 (438)
T PRK07721        167 SGVGKSTLMGMIARNT----SADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGAYTATAIAEY  242 (438)
T ss_pred             CCCCHHHHHHHHhccc----CCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            6999999999888773    222344444322333445444332221111000   00111111      1122334455


Q ss_pred             h--CCCcEEEEEeCCCCc
Q 046006           73 L--SKKKFVLLLDDKWER   88 (180)
Q Consensus        73 L--~~k~~LlVlDdv~~~   88 (180)
                      +  +++.+||++||+-..
T Consensus       243 fr~~g~~Vll~~Dsltr~  260 (438)
T PRK07721        243 FRDQGLNVMLMMDSVTRV  260 (438)
T ss_pred             HHHCCCcEEEEEeChHHH
Confidence            5  588999999998653

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=94.87  E-value=0.086  Score=46.27  Aligned_cols=20  Identities=15%  Similarity=0.147  Sum_probs=17.2

Q ss_pred             ceEeecCCChhhhHHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK  124 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~  124 (180)
                      ..+.+++++.++..+++...
T Consensus       338 ~~i~v~~p~~~~~~~il~~~  357 (731)
T TIGR02639       338 QKIDVGEPSIEETVKILKGL  357 (731)
T ss_pred             ceEEeCCCCHHHHHHHHHHH
Confidence            46889999999999998864

>PRK09099 type III secretion system ATPase; Provisional

Probab=94.87  E-value=0.13  Score=42.35  Aligned_cols=82  Identities=17%  Similarity=0.254  Sum_probs=44.2

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCC---CCCCCcChH------HHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDG---DSWKNKNSE------EKALEIFR   71 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~------~~~~~l~~   71 (180)
                      +|+|||||++.++...     ..+..+..-+++ .....++.+.+...-+....   ......+..      ...-.+.+
T Consensus       172 sG~GKTtLl~~ia~~~-----~~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~a~tiAE  246 (441)
T PRK09099        172 AGVGKSTLMGMFARGT-----QCDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVATAIAE  246 (441)
T ss_pred             CCCCHHHHHHHHhCCC-----CCCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            6999999999998773     123333334444 34555555555443222100   001111111      12233445


Q ss_pred             Hh--CCCcEEEEEeCCCCc
Q 046006           72 FL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        72 ~L--~~k~~LlVlDdv~~~   88 (180)
                      ++  +++.+|+++||+-..
T Consensus       247 yfrd~G~~VLl~~DslTr~  265 (441)
T PRK09099        247 YFRDRGLRVLLMMDSLTRF  265 (441)
T ss_pred             HHHHcCCCEEEeccchhHH
Confidence            55  488999999998654

>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=94.86  E-value=0.14  Score=41.56  Aligned_cols=82  Identities=22%  Similarity=0.285  Sum_probs=54.3

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCC---CCCCCcC------hHHHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDG---DSWKNKN------SEEKALEIFR   71 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~------~~~~~~~l~~   71 (180)
                      +|+|||||--.+++.     ..+|.++--=+++ -..+.+++++.+..-+....   ..+...+      ....+..+.+
T Consensus       172 sGVGKStLLgMiar~-----t~aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~At~IAE  246 (441)
T COG1157         172 SGVGKSTLLGMIARN-----TEADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFTATTIAE  246 (441)
T ss_pred             CCCcHHHHHHHHhcc-----ccCCEEEEEEeeccchhHHHHHHHhcchhhccceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            699999999999987     6777766555655 34677888777766554310   0111111      2233556777


Q ss_pred             HhC--CCcEEEEEeCCCCc
Q 046006           72 FLS--KKKFVLLLDDKWER   88 (180)
Q Consensus        72 ~L~--~k~~LlVlDdv~~~   88 (180)
                      +++  ++++||++|-+-..
T Consensus       247 yFRDqG~~VLL~mDSlTRf  265 (441)
T COG1157         247 YFRDQGKRVLLIMDSLTRF  265 (441)
T ss_pred             HHHhCCCeEEEEeecHHHH
Confidence            774  78999999998653

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=94.85  E-value=0.32  Score=38.51  Aligned_cols=82  Identities=22%  Similarity=0.236  Sum_probs=45.3

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCC---CCCCCcChH------HHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDG---DSWKNKNSE------EKALEIFR   71 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~------~~~~~l~~   71 (180)
                      +|+|||||.+.++...     .-+..+..-++. .....++.......-+....   ......+..      ...-.+.+
T Consensus        78 sG~GKTtLl~~Ia~~~-----~~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~~a~~~AE  152 (326)
T cd01136          78 SGVGKSTLLGMIARGT-----TADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTATAIAE  152 (326)
T ss_pred             CCCChHHHHHHHhCCC-----CCCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            6999999999998873     223444455554 34556666555554322100   011111111      12233444


Q ss_pred             Hh--CCCcEEEEEeCCCCc
Q 046006           72 FL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        72 ~L--~~k~~LlVlDdv~~~   88 (180)
                      ++  +++.+|+++||+-..
T Consensus       153 yfr~~g~~Vll~~Dsltr~  171 (326)
T cd01136         153 YFRDQGKDVLLLMDSLTRF  171 (326)
T ss_pred             HHHHcCCCeEEEeccchHH
Confidence            44  588999999997653

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=94.84  E-value=0.084  Score=46.34  Aligned_cols=73  Identities=19%  Similarity=0.164  Sum_probs=37.8

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC-CCcEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS-KKKFV   79 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~-~k~~L   79 (180)
                      ++|+|||.||+.++..+.      ...+.+++++-....    .+.+.++.+ ...........    +.+.++ ....+
T Consensus       492 p~GvGKT~lA~~la~~l~------~~~~~~d~se~~~~~----~~~~lig~~-~gyvg~~~~~~----l~~~~~~~p~~V  556 (731)
T TIGR02639       492 PTGVGKTELAKQLAEALG------VHLERFDMSEYMEKH----TVSRLIGAP-PGYVGFEQGGL----LTEAVRKHPHCV  556 (731)
T ss_pred             CCCccHHHHHHHHHHHhc------CCeEEEeCchhhhcc----cHHHHhcCC-CCCcccchhhH----HHHHHHhCCCeE
Confidence            479999999999988752      233455554422111    122223322 11111111222    333333 34569


Q ss_pred             EEEeCCCCc
Q 046006           80 LLLDDKWER   88 (180)
Q Consensus        80 lVlDdv~~~   88 (180)
                      ++||+++..
T Consensus       557 vllDEieka  565 (731)
T TIGR02639       557 LLLDEIEKA  565 (731)
T ss_pred             EEEechhhc
Confidence            999999865

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=94.82  E-value=0.1  Score=42.86  Aligned_cols=80  Identities=21%  Similarity=0.135  Sum_probs=41.0

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV   79 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L   79 (180)
                      ++|+||||++..++..+. ....-..+..++..... ...+-+....+.++.+ .  ....+..+....+.+ +. ..=+
T Consensus       229 ptGvGKTTt~~kLA~~~~-~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp-~--~~~~~~~~l~~~l~~-~~-~~Dl  302 (424)
T PRK05703        229 PTGVGKTTTLAKLAARYA-LLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIP-V--EVVYDPKELAKALEQ-LR-DCDV  302 (424)
T ss_pred             CCCCCHHHHHHHHHHHHH-HhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCc-e--EccCCHHhHHHHHHH-hC-CCCE
Confidence            479999999998877642 01222345566554321 1223344444555543 1  122333444444443 33 3467


Q ss_pred             EEEeCCC
Q 046006           80 LLLDDKW   86 (180)
Q Consensus        80 lVlDdv~   86 (180)
                      +++|..-
T Consensus       303 VlIDt~G  309 (424)
T PRK05703        303 ILIDTAG  309 (424)
T ss_pred             EEEeCCC
Confidence            7888763

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=94.81  E-value=0.15  Score=41.51  Aligned_cols=48  Identities=17%  Similarity=0.163  Sum_probs=32.2

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEE-eCCCCCHHHHHHHHHHHhCCC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIV-VSKDLQLEKIQEIVGKKVGLL   52 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l~~~   52 (180)
                      =|.||||-|-.+++.+..  ..+. +.-|+ .-..+...+-++.+.++.+.+
T Consensus       109 QGsGKTTt~~KLA~~lkk--~~~k-vllVaaD~~RpAA~eQL~~La~q~~v~  157 (451)
T COG0541         109 QGSGKTTTAGKLAKYLKK--KGKK-VLLVAADTYRPAAIEQLKQLAEQVGVP  157 (451)
T ss_pred             cCCChHhHHHHHHHHHHH--cCCc-eEEEecccCChHHHHHHHHHHHHcCCc
Confidence            399999999999998742  2222 23333 233456666788888888765

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=94.80  E-value=0.028  Score=49.00  Aligned_cols=77  Identities=23%  Similarity=0.337  Sum_probs=42.8

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcE-E
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKF-V   79 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~-L   79 (180)
                      +.|+|||.||+.++..+-   +.-+..+=+++|+--.    -..+.+-+|.+++. ........    |-+..+.++| +
T Consensus       529 PTGVGKTELAkaLA~~Lf---g~e~aliR~DMSEy~E----kHsVSrLIGaPPGY-VGyeeGG~----LTEaVRr~PySV  596 (786)
T COG0542         529 PTGVGKTELAKALAEALF---GDEQALIRIDMSEYME----KHSVSRLIGAPPGY-VGYEEGGQ----LTEAVRRKPYSV  596 (786)
T ss_pred             CCcccHHHHHHHHHHHhc---CCCccceeechHHHHH----HHHHHHHhCCCCCC-ceeccccc----hhHhhhcCCCeE
Confidence            479999999999988752   1113444454443211    12333445544221 11122333    4445566766 8


Q ss_pred             EEEeCCCCcc
Q 046006           80 LLLDDKWERV   89 (180)
Q Consensus        80 lVlDdv~~~~   89 (180)
                      +.||++...+
T Consensus       597 iLlDEIEKAH  606 (786)
T COG0542         597 ILLDEIEKAH  606 (786)
T ss_pred             EEechhhhcC
Confidence            8899998764

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=94.76  E-value=0.24  Score=40.46  Aligned_cols=82  Identities=22%  Similarity=0.249  Sum_probs=45.1

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChH------HHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSE------EKALEIFR   71 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~------~~~~~l~~   71 (180)
                      +|+|||||.+.+.+..     ..+..+...+++.. ...++...+...=.....   ......+..      ...-.+.+
T Consensus       146 sG~GKTtLl~~I~~~~-----~~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~~a~tiAE  220 (411)
T TIGR03496       146 SGVGKSTLLGMMARYT-----EADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFYATAIAE  220 (411)
T ss_pred             CCCCHHHHHHHHhcCC-----CCCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            6999999999888773     22445555566543 455555555433211100   001111111      12233444


Q ss_pred             Hh--CCCcEEEEEeCCCCc
Q 046006           72 FL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        72 ~L--~~k~~LlVlDdv~~~   88 (180)
                      ++  +++++|+++||+-..
T Consensus       221 yfr~~G~~Vll~~Dsltr~  239 (411)
T TIGR03496       221 YFRDQGKDVLLLMDSLTRF  239 (411)
T ss_pred             HHHHCCCCEEEEEeChHHH
Confidence            44  588999999998653

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=94.74  E-value=0.027  Score=42.79  Aligned_cols=31  Identities=29%  Similarity=0.389  Sum_probs=21.9

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK   34 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~   34 (180)
                      ||+||||+|.+++..++...+  ..++.+....
T Consensus        12 GGvGKTT~a~nLa~~La~~~~--~kVLliDlDp   42 (259)
T COG1192          12 GGVGKTTTAVNLAAALAKRGG--KKVLLIDLDP   42 (259)
T ss_pred             CCccHHHHHHHHHHHHHHhcC--CcEEEEeCCC
Confidence            899999999999998741211  3466666544

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=94.73  E-value=0.036  Score=38.69  Aligned_cols=60  Identities=17%  Similarity=0.183  Sum_probs=33.1

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSK   75 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~   75 (180)
                      ||+||||||.+++...        +.-|+++|.-..-..+...-=+.      .....-+.+.....|--.+..
T Consensus        16 PG~GKstl~~~lae~~--------~~~~i~isd~vkEn~l~~gyDE~------y~c~i~DEdkv~D~Le~~m~~   75 (176)
T KOG3347|consen   16 PGTGKSTLAERLAEKT--------GLEYIEISDLVKENNLYEGYDEE------YKCHILDEDKVLDELEPLMIE   75 (176)
T ss_pred             CCCCchhHHHHHHHHh--------CCceEehhhHHhhhcchhccccc------ccCccccHHHHHHHHHHHHhc
Confidence            7999999999998662        23466666433333332221111      122334555666666655543

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=94.70  E-value=0.036  Score=39.85  Aligned_cols=37  Identities=27%  Similarity=0.321  Sum_probs=24.1

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKI   41 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~   41 (180)
                      ||+||||+|..++..+..   +-..++-+......+....
T Consensus         8 GG~GKTt~a~~la~~la~---~g~~VlliD~D~~~~~~~~   44 (195)
T PF01656_consen    8 GGVGKTTIAANLAQALAR---KGKKVLLIDLDPQAPNLSI   44 (195)
T ss_dssp             TTSSHHHHHHHHHHHHHH---TTS-EEEEEESTTSHHHHH
T ss_pred             CCccHHHHHHHHHhcccc---ccccccccccCcccccHHH
Confidence            899999999999988642   2234556665544433333

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>PRK00131 aroK shikimate kinase; Reviewed

Probab=94.70  E-value=0.019  Score=40.60  Aligned_cols=17  Identities=24%  Similarity=0.450  Sum_probs=15.5

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.++..+
T Consensus        12 ~~GsGKstla~~La~~l   28 (175)
T PRK00131         12 FMGAGKSTIGRLLAKRL   28 (175)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999999885

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=94.69  E-value=0.021  Score=39.56  Aligned_cols=17  Identities=24%  Similarity=0.515  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus         7 ~~GsGKST~a~~l~~~~   23 (150)
T cd02021           7 VSGSGKSTVGKALAERL   23 (150)
T ss_pred             CCCCCHHHHHHHHHhhc
Confidence            48999999999998873

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=94.66  E-value=0.24  Score=42.37  Aligned_cols=16  Identities=38%  Similarity=0.484  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      +||+|||++|+.+++.
T Consensus       476 PPGC~KT~lAkalAne  491 (693)
T KOG0730|consen  476 PPGCGKTLLAKALANE  491 (693)
T ss_pred             CCCcchHHHHHHHhhh
Confidence            5899999999999998

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=94.64  E-value=0.26  Score=36.67  Aligned_cols=17  Identities=24%  Similarity=0.225  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+||||+|+.+...+
T Consensus         7 ~sGSGKTTla~~L~~~l   23 (220)
T cd02025           7 SVAVGKSTTARVLQALL   23 (220)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            37999999999999875

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PHA02518 ParA-like protein; Provisional

Probab=94.63  E-value=0.053  Score=39.58  Aligned_cols=36  Identities=22%  Similarity=0.303  Sum_probs=23.5

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEK   40 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~   40 (180)
                      ||+||||+|..++..+..  .. ..++-++.....+...
T Consensus        10 GGvGKTT~a~~la~~la~--~g-~~vlliD~D~q~~~~~   45 (211)
T PHA02518         10 GGAGKTTVATNLASWLHA--DG-HKVLLVDLDPQGSSTD   45 (211)
T ss_pred             CCCCHHHHHHHHHHHHHh--CC-CeEEEEeCCCCCChHH
Confidence            899999999998887531  11 2455566555444443

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.63  E-value=0.14  Score=43.05  Aligned_cols=81  Identities=16%  Similarity=0.177  Sum_probs=39.7

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV   79 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L   79 (180)
                      .+|+||||++..++..+. .+.....+..++... .....+.+....+.++..   .....+..++...+. .+.+ .=+
T Consensus       358 PtGvGKTTtaakLAa~la-~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~---v~~a~d~~~L~~aL~-~l~~-~DL  431 (559)
T PRK12727        358 PTGAGKTTTIAKLAQRFA-AQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIA---VHEADSAESLLDLLE-RLRD-YKL  431 (559)
T ss_pred             CCCCCHHHHHHHHHHHHH-HhcCCCceEEEecccccccHHHHHHHhhcccCce---eEecCcHHHHHHHHH-Hhcc-CCE
Confidence            379999999999887642 112123344555432 222223333333444332   111223334443333 3333 457


Q ss_pred             EEEeCCCC
Q 046006           80 LLLDDKWE   87 (180)
Q Consensus        80 lVlDdv~~   87 (180)
                      +++|..-.
T Consensus       432 VLIDTaG~  439 (559)
T PRK12727        432 VLIDTAGM  439 (559)
T ss_pred             EEecCCCc
Confidence            78888643

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=94.62  E-value=0.5  Score=37.41  Aligned_cols=20  Identities=10%  Similarity=0.135  Sum_probs=16.6

Q ss_pred             ceEeecCCChhhhHHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK  124 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~  124 (180)
                      ..+++.+++.++..+.+.+.
T Consensus       162 ~~i~~~~~~~~~~~~~L~~~  181 (329)
T PRK08058        162 QVVEFRPLPPESLIQRLQEE  181 (329)
T ss_pred             eeeeCCCCCHHHHHHHHHHc
Confidence            57889999999988888765

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=94.60  E-value=0.021  Score=40.77  Aligned_cols=17  Identities=12%  Similarity=0.305  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+....
T Consensus        10 ~~gsGKst~a~~l~~~~   26 (175)
T cd00227          10 GSSAGKSSIARALQSVL   26 (175)
T ss_pred             CCCCCHHHHHHHHHHhh
Confidence            58999999999998874

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK13947 shikimate kinase; Provisional

Probab=94.60  E-value=0.02  Score=40.50  Aligned_cols=17  Identities=29%  Similarity=0.452  Sum_probs=15.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      |+|+||||+|+.+++.+
T Consensus         9 ~~GsGKst~a~~La~~l   25 (171)
T PRK13947          9 FMGTGKTTVGKRVATTL   25 (171)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            68999999999999885

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=94.60  E-value=0.068  Score=41.79  Aligned_cols=17  Identities=35%  Similarity=0.479  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||++|+.+++..
T Consensus        51 ~~G~GKT~la~~l~~~~   67 (316)
T PHA02544         51 SPGTGKTTVAKALCNEV   67 (316)
T ss_pred             cCCCCHHHHHHHHHHHh
Confidence            47999999999998874

>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B

Probab=94.59  E-value=0.034  Score=43.59  Aligned_cols=38  Identities=21%  Similarity=0.309  Sum_probs=23.0

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQ   42 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~   42 (180)
                      ||+||||+|..++-...+ ++  ..++-++....+++.+++
T Consensus        10 GGVGKTT~aaA~A~~~A~-~G--~rtLlvS~Dpa~~L~d~l   47 (305)
T PF02374_consen   10 GGVGKTTVAAALALALAR-RG--KRTLLVSTDPAHSLSDVL   47 (305)
T ss_dssp             TTSSHHHHHHHHHHHHHH-TT--S-EEEEESSTTTHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHhh-CC--CCeeEeecCCCccHHHHh
Confidence            899999999888776532 11  234555555444444443

...

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=94.57  E-value=0.018  Score=42.87  Aligned_cols=83  Identities=19%  Similarity=0.085  Sum_probs=47.7

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-------------CCCC----CCcChH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLD-------------GDSW----KNKNSE   63 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------------~~~~----~~~~~~   63 (180)
                      .+|+|||+||.+++.... . +.=..++|++..+++  .++.+.+- .++.+.             ....    ...+.+
T Consensus        27 ~~GsGKT~l~~q~l~~~~-~-~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~~~~~~~~  101 (226)
T PF06745_consen   27 PPGSGKTTLALQFLYNGL-K-NFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIGWSPNDLE  101 (226)
T ss_dssp             STTSSHHHHHHHHHHHHH-H-HHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST-TSCCHH
T ss_pred             CCCCCcHHHHHHHHHHhh-h-hcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccccccccccCHH
Confidence            379999999999776532 1 213457788765433  44444432 333210             0000    045677


Q ss_pred             HHHHHHHHHhCC-CcEEEEEeCCCCc
Q 046006           64 EKALEIFRFLSK-KKFVLLLDDKWER   88 (180)
Q Consensus        64 ~~~~~l~~~L~~-k~~LlVlDdv~~~   88 (180)
                      .....+.+.++. +...+|+|.+...
T Consensus       102 ~l~~~i~~~i~~~~~~~vVIDsls~l  127 (226)
T PF06745_consen  102 ELLSKIREAIEELKPDRVVIDSLSAL  127 (226)
T ss_dssp             HHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEECHHHH
Confidence            888888887753 4579999987544

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=94.56  E-value=0.044  Score=43.18  Aligned_cols=41  Identities=24%  Similarity=0.330  Sum_probs=26.5

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEI   44 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~   44 (180)
                      .||+||||+|.+.+-...   .....++-|+....+++.+++..
T Consensus        10 KGGVGKTT~aaA~A~~lA---~~g~kvLlvStDPAhsL~d~f~~   50 (322)
T COG0003          10 KGGVGKTTIAAATAVKLA---ESGKKVLLVSTDPAHSLGDVFDL   50 (322)
T ss_pred             CCcccHHHHHHHHHHHHH---HcCCcEEEEEeCCCCchHhhhcc
Confidence            389999999999777653   22244666665555555554433

>PRK06820 type III secretion system ATPase; Validated

Probab=94.53  E-value=0.11  Score=42.75  Aligned_cols=82  Identities=21%  Similarity=0.228  Sum_probs=42.1

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChHH------HHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSEE------KALEIFR   71 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~------~~~~l~~   71 (180)
                      +|+|||||++.++...     +.+.++..-+++.. ...++....+..=.....   ......+...      ....+.+
T Consensus       172 sG~GKStLl~~I~~~~-----~~dv~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~a~~~a~tiAE  246 (440)
T PRK06820        172 AGVGKSTLLGMLCADS-----AADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKGLSTATTIAE  246 (440)
T ss_pred             CCCChHHHHHHHhccC-----CCCEEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            6999999999888762     33455555566552 222232222211000000   0011111111      2233445


Q ss_pred             Hh--CCCcEEEEEeCCCCc
Q 046006           72 FL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        72 ~L--~~k~~LlVlDdv~~~   88 (180)
                      ++  +++.+||++||+-..
T Consensus       247 yfrd~G~~VLl~~Dsltr~  265 (440)
T PRK06820        247 YFRDRGKKVLLMADSLTRY  265 (440)
T ss_pred             HHHHcCCCEEEEccchhHH
Confidence            55  488999999998654

>PRK04196 V-type ATP synthase subunit B; Provisional

Probab=94.52  E-value=0.11  Score=43.07  Aligned_cols=85  Identities=14%  Similarity=0.180  Sum_probs=49.0

Q ss_pred             CCCcHHHHHHHHHccccccc---CCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChH------HHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSS---TDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSE------EKALE   68 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~---~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~------~~~~~   68 (180)
                      .|+|||+|+..+.++- ...   ..+ .++++-+++.. ...+++..+...=.....   ......+.-      -....
T Consensus       152 ~G~GKs~L~~~ia~~~-~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~t  229 (460)
T PRK04196        152 SGLPHNELAAQIARQA-KVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALT  229 (460)
T ss_pred             CCCCccHHHHHHHHhh-hhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHHHHHHHH
Confidence            5999999999998872 221   111 56677777654 566666666654221100   001111111      12344


Q ss_pred             HHHHhC---CCcEEEEEeCCCCc
Q 046006           69 IFRFLS---KKKFVLLLDDKWER   88 (180)
Q Consensus        69 l~~~L~---~k~~LlVlDdv~~~   88 (180)
                      +.++++   ++++||++||+-..
T Consensus       230 iAEyfr~d~G~~VLli~DslTR~  252 (460)
T PRK04196        230 AAEYLAFEKGMHVLVILTDMTNY  252 (460)
T ss_pred             HHHHHHHhcCCcEEEEEcChHHH
Confidence            666665   58999999998653

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=94.50  E-value=0.025  Score=43.54  Aligned_cols=17  Identities=29%  Similarity=0.538  Sum_probs=14.7

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||++++.....+
T Consensus        41 ~~GtGKT~li~~~l~~l   57 (272)
T PF12775_consen   41 PSGTGKTSLIQNFLSSL   57 (272)
T ss_dssp             STTSSHHHHHHHHHHCS
T ss_pred             CCCCchhHHHHhhhccC
Confidence            47999999999988774

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=94.50  E-value=0.23  Score=43.74  Aligned_cols=20  Identities=5%  Similarity=0.102  Sum_probs=17.5

Q ss_pred             ceEeecCCChhhhHHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK  124 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~  124 (180)
                      ..+.+++++.++..+++...
T Consensus       342 q~I~v~ePs~~~~~~IL~~~  361 (758)
T PRK11034        342 QKIDITEPSIEETVQIINGL  361 (758)
T ss_pred             cEEEeCCCCHHHHHHHHHHH
Confidence            46899999999999998865

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=94.50  E-value=0.022  Score=40.77  Aligned_cols=17  Identities=35%  Similarity=0.399  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +||+||||+|+.++..+
T Consensus         7 ~pGsGKst~a~~la~~~   23 (183)
T TIGR01359         7 GPGSGKGTQCAKIVENF   23 (183)
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            58999999999998874

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=94.48  E-value=0.2  Score=40.79  Aligned_cols=82  Identities=18%  Similarity=0.191  Sum_probs=42.8

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCC-CcE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD-LQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSK-KKF   78 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-k~~   78 (180)
                      .+|+||||++..++..+.  ...+ .+..++.... ....+-+....+.++.+   .....+...+.+.+...-.. +.=
T Consensus       249 ptGvGKTTTiaKLA~~L~--~~Gk-kVglI~aDt~RiaAvEQLk~yae~lgip---v~v~~d~~~L~~aL~~lk~~~~~D  322 (436)
T PRK11889        249 PTGVGKTTTLAKMAWQFH--GKKK-TVGFITTDHSRIGTVQQLQDYVKTIGFE---VIAVRDEAAMTRALTYFKEEARVD  322 (436)
T ss_pred             CCCCcHHHHHHHHHHHHH--HcCC-cEEEEecCCcchHHHHHHHHHhhhcCCc---EEecCCHHHHHHHHHHHHhccCCC
Confidence            479999999999988752  2222 2344544332 22333344444445443   11233555555555443321 334


Q ss_pred             EEEEeCCCCc
Q 046006           79 VLLLDDKWER   88 (180)
Q Consensus        79 LlVlDdv~~~   88 (180)
                      ++++|-.-..
T Consensus       323 vVLIDTaGRs  332 (436)
T PRK11889        323 YILIDTAGKN  332 (436)
T ss_pred             EEEEeCcccc
Confidence            6777876543

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=94.48  E-value=0.016  Score=39.34  Aligned_cols=18  Identities=39%  Similarity=0.508  Sum_probs=13.4

Q ss_pred             CCCCcHHHHHHHHHcccc
Q 046006            1 MGGVGKTTLLTHINNKFL   18 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~   18 (180)
                      .+|+|||++|+.++....
T Consensus         7 ~PG~GKT~la~~lA~~~~   24 (131)
T PF07726_consen    7 VPGVGKTTLAKALARSLG   24 (131)
T ss_dssp             ---HHHHHHHHHHHHHTT
T ss_pred             CCccHHHHHHHHHHHHcC
Confidence            379999999999998853

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>TIGR01351 adk adenylate kinases

Probab=94.48  E-value=0.05  Score=40.05  Aligned_cols=17  Identities=35%  Similarity=0.464  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +||+||||+|+.++..+
T Consensus         7 ~pGsGKsT~a~~La~~~   23 (210)
T TIGR01351         7 PPGSGKGTQAKRIAEKY   23 (210)
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            58999999999998774

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=94.45  E-value=0.12  Score=40.38  Aligned_cols=40  Identities=25%  Similarity=0.300  Sum_probs=28.5

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCC-hHHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGL-PLALITIG  144 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~-PLal~~~~  144 (180)
                      ..+..++|..++...-+...           ..+.|++.++|. --|+.++-
T Consensus       181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lq  232 (346)
T KOG0989|consen  181 QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQ  232 (346)
T ss_pred             HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence            35677888888888777766           788899999884 34444443

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=94.42  E-value=0.024  Score=37.13  Aligned_cols=17  Identities=29%  Similarity=0.561  Sum_probs=14.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||+||..++.++
T Consensus         6 ~~G~GKS~l~~~l~~~l   22 (107)
T PF00910_consen    6 PPGIGKSTLAKELAKDL   22 (107)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            37999999999988765

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=94.40  E-value=1.1  Score=35.36  Aligned_cols=38  Identities=21%  Similarity=0.143  Sum_probs=31.2

Q ss_pred             ceEeecCCChhhhHHHHHHH------H--HHHHHHHcCCChHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK------L--AQTVAKKCVGLPLALIT  142 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~------~--~~~i~~~c~g~PLal~~  142 (180)
                      ..+++.+++.++..+.+.+.      .  ...++..++|.|..+..
T Consensus       175 q~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~l~~~a~Gs~~~al~  220 (314)
T PRK07399        175 QIIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALAQGSPGAAIA  220 (314)
T ss_pred             eEEecCCCCHHHHHHHHHHhhccccchhHHHHHHHHcCCCHHHHHH
Confidence            57899999999999999987      1  26889999999965543

>CHL00095 clpC Clp protease ATP binding subunit

Probab=94.39  E-value=0.084  Score=46.95  Aligned_cols=17  Identities=41%  Similarity=0.569  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||+||+.+++.+
T Consensus       547 p~GvGKt~lA~~LA~~l  563 (821)
T CHL00095        547 PTGVGKTELTKALASYF  563 (821)
T ss_pred             CCCCcHHHHHHHHHHHh
Confidence            47999999999998874

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.35  E-value=0.062  Score=44.98  Aligned_cols=60  Identities=13%  Similarity=0.144  Sum_probs=37.2

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh----CCC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL----SKK   76 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L----~~k   76 (180)
                      +||.|||-||++++-.- .| .+|     ...+.                     .....-+...+++++..+    ..-
T Consensus       345 PPGTGKTlLARAvAGEA-~V-PFF-----~~sGS---------------------EFdEm~VGvGArRVRdLF~aAk~~A  396 (752)
T KOG0734|consen  345 PPGTGKTLLARAVAGEA-GV-PFF-----YASGS---------------------EFDEMFVGVGARRVRDLFAAAKARA  396 (752)
T ss_pred             CCCCchhHHHHHhhccc-CC-CeE-----ecccc---------------------chhhhhhcccHHHHHHHHHHHHhcC
Confidence            58999999999999882 22 222     11111                     222233444455555555    345


Q ss_pred             cEEEEEeCCCCc
Q 046006           77 KFVLLLDDKWER   88 (180)
Q Consensus        77 ~~LlVlDdv~~~   88 (180)
                      +|+|.+|+++..
T Consensus       397 PcIIFIDEiDav  408 (752)
T KOG0734|consen  397 PCIIFIDEIDAV  408 (752)
T ss_pred             CeEEEEechhhh
Confidence            899999999865

>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]

Probab=94.34  E-value=1.3  Score=38.42  Aligned_cols=80  Identities=15%  Similarity=0.085  Sum_probs=55.0

Q ss_pred             CCCcHHHHHHHHHccccc-----ccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC--
Q 046006            2 GGVGKTTLLTHINNKFLV-----SSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS--   74 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~-----~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~--   74 (180)
                      ||+|||..+..|.+.+..     ....|+ .+.|+.-.-.+..+++..|...+...      ........+.|..+..  
T Consensus       431 PGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y~~I~~~lsg~------~~~~~~al~~L~~~f~~~  503 (767)
T KOG1514|consen  431 PGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIYEKIWEALSGE------RVTWDAALEALNFRFTVP  503 (767)
T ss_pred             CCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHHHHHHHhcccC------cccHHHHHHHHHHhhccC
Confidence            799999999999885521     123343 45566555667999999999999654      2234445555555553  


Q ss_pred             ---CCcEEEEEeCCCCc
Q 046006           75 ---KKKFVLLLDDKWER   88 (180)
Q Consensus        75 ---~k~~LlVlDdv~~~   88 (180)
                         .+.+++++|+++..
T Consensus       504 k~~~~~~VvLiDElD~L  520 (767)
T KOG1514|consen  504 KPKRSTTVVLIDELDIL  520 (767)
T ss_pred             CCCCCCEEEEeccHHHH
Confidence               45799999998754

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=94.33  E-value=0.13  Score=39.43  Aligned_cols=17  Identities=29%  Similarity=0.401  Sum_probs=15.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|.|||-+|+++++..
T Consensus       159 ppGTGKTm~Akalane~  175 (368)
T COG1223         159 PPGTGKTMMAKALANEA  175 (368)
T ss_pred             CCCccHHHHHHHHhccc
Confidence            58999999999999984

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=94.32  E-value=1  Score=38.37  Aligned_cols=36  Identities=19%  Similarity=0.162  Sum_probs=27.2

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL  140 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal  140 (180)
                      ..++..+++.++..+.+...           .+..|++.++|.+..+
T Consensus       171 ~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~a  217 (559)
T PRK05563        171 QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDA  217 (559)
T ss_pred             eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence            45778889998888877764           5677888888877543

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=94.30  E-value=0.028  Score=39.49  Aligned_cols=17  Identities=24%  Similarity=0.632  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus         6 ~~GsGKSTla~~l~~~l   22 (163)
T TIGR01313         6 VAGSGKSTIASALAHRL   22 (163)
T ss_pred             CCCCCHHHHHHHHHHhc
Confidence            47999999999999884

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=94.29  E-value=0.14  Score=41.97  Aligned_cols=82  Identities=20%  Similarity=0.212  Sum_probs=45.6

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCC---CCCCCcCh------HHHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDG---DSWKNKNS------EEKALEIFR   71 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~------~~~~~~l~~   71 (180)
                      +|+|||||++.++...    ....+++. -+++ .....+++...+..-+....   ......+.      ......+.+
T Consensus       165 sG~GKTtLl~~Ia~~~----~~~~gvI~-~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAE  239 (432)
T PRK06793        165 SGVGKSTLLGMIAKNA----KADINVIS-LVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAE  239 (432)
T ss_pred             CCCChHHHHHHHhccC----CCCeEEEE-eCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            6999999999998873    22223333 3443 35666776666554332200   00111111      112333444


Q ss_pred             Hh--CCCcEEEEEeCCCCc
Q 046006           72 FL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        72 ~L--~~k~~LlVlDdv~~~   88 (180)
                      ++  ++++.|+++||+-..
T Consensus       240 yfr~~G~~VLlilDslTr~  258 (432)
T PRK06793        240 YFRDQGNNVLLMMDSVTRF  258 (432)
T ss_pred             HHHHcCCcEEEEecchHHH
Confidence            44  478999999998654

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=94.29  E-value=0.49  Score=38.84  Aligned_cols=82  Identities=22%  Similarity=0.230  Sum_probs=44.4

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCC---CCCCCcChH------HHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDG---DSWKNKNSE------EKALEIFR   71 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~------~~~~~l~~   71 (180)
                      +|+|||||.+.++...     ..+......++. .....++..+....-.....   ......+..      .....+.+
T Consensus       154 sG~GKStLl~~I~~~~-----~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~~~~a~~~AE  228 (422)
T TIGR02546       154 AGVGKSTLLGMIARGA-----SADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAAYTATAIAE  228 (422)
T ss_pred             CCCChHHHHHHHhCCC-----CCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHHHHHHHHHHH
Confidence            6999999999998873     234444444554 33555555554433221100   001111111      12233444


Q ss_pred             Hh--CCCcEEEEEeCCCCc
Q 046006           72 FL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        72 ~L--~~k~~LlVlDdv~~~   88 (180)
                      ++  .+++.|+++|++-..
T Consensus       229 ~f~~~g~~Vl~~~Dsltr~  247 (422)
T TIGR02546       229 YFRDQGKRVLLMMDSLTRF  247 (422)
T ss_pred             HHHHCCCcEEEEEeCchHH
Confidence            44  478999999998743

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.24  E-value=0.28  Score=39.71  Aligned_cols=82  Identities=17%  Similarity=0.084  Sum_probs=47.5

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh-CCCcE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD-LQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL-SKKKF   78 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~   78 (180)
                      +.|+||||++..++..+. . .. ..+.+++.... ....+-+....+.++.+   .....+..++...+...- .+..=
T Consensus       214 ptGvGKTTt~akLA~~l~-~-~g-~~V~lItaDtyR~gAveQLk~yae~lgvp---v~~~~dp~dL~~al~~l~~~~~~D  287 (407)
T PRK12726        214 QTGVGKTTTLVKLGWQLL-K-QN-RTVGFITTDTFRSGAVEQFQGYADKLDVE---LIVATSPAELEEAVQYMTYVNCVD  287 (407)
T ss_pred             CCCCCHHHHHHHHHHHHH-H-cC-CeEEEEeCCccCccHHHHHHHHhhcCCCC---EEecCCHHHHHHHHHHHHhcCCCC
Confidence            369999999999987742 2 22 34556665543 23344555666666554   112345666655554432 13456


Q ss_pred             EEEEeCCCCc
Q 046006           79 VLLLDDKWER   88 (180)
Q Consensus        79 LlVlDdv~~~   88 (180)
                      ++++|-.-..
T Consensus       288 ~VLIDTAGr~  297 (407)
T PRK12726        288 HILIDTVGRN  297 (407)
T ss_pred             EEEEECCCCC
Confidence            7888887553

>CHL00095 clpC Clp protease ATP binding subunit

Probab=94.24  E-value=0.11  Score=46.29  Aligned_cols=17  Identities=29%  Similarity=0.517  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .||+|||++|..++...
T Consensus       208 ~pGvGKTal~~~la~~i  224 (821)
T CHL00095        208 EPGVGKTAIAEGLAQRI  224 (821)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            48999999999998875

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=94.23  E-value=0.051  Score=41.00  Aligned_cols=29  Identities=21%  Similarity=0.193  Sum_probs=19.9

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEe
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVV   32 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~   32 (180)
                      |+|+||||+++.+.+.+.   ..-..++-|+.
T Consensus         4 paGSGKTT~~~~~~~~~~---~~~~~~~~vNL   32 (238)
T PF03029_consen    4 PAGSGKTTFCKGLSEWLE---SNGRDVYIVNL   32 (238)
T ss_dssp             STTSSHHHHHHHHHHHHT---TT-S-EEEEE-
T ss_pred             CCCCCHHHHHHHHHHHHH---hccCCceEEEc
Confidence            689999999999998864   22234555663

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=94.22  E-value=0.065  Score=44.75  Aligned_cols=17  Identities=29%  Similarity=0.274  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +||+|||.||+++++..
T Consensus       284 pPGtGKT~lAkava~~~  300 (494)
T COG0464         284 PPGTGKTLLAKAVALES  300 (494)
T ss_pred             CCCCCHHHHHHHHHhhC
Confidence            58999999999999963

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=94.21  E-value=0.039  Score=42.07  Aligned_cols=80  Identities=18%  Similarity=0.105  Sum_probs=48.3

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-----------------CCC------CC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLD-----------------GDS------WK   58 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----------------~~~------~~   58 (180)
                      ||+|||++|.++.....   ++...++||+..+.+  .++.+...+ ++...                 ...      ..
T Consensus        32 pGsGKT~f~~qfl~~~~---~~ge~vlyvs~~e~~--~~l~~~~~~-~g~d~~~~~~~g~l~i~d~~~~~~~~~~~~~~~  105 (260)
T COG0467          32 PGTGKTIFALQFLYEGA---REGEPVLYVSTEESP--EELLENARS-FGWDLEVYIEKGKLAILDAFLSEKGLVSIVVGD  105 (260)
T ss_pred             CCCcHHHHHHHHHHHHH---hcCCcEEEEEecCCH--HHHHHHHHH-cCCCHHHHhhcCCEEEEEccccccccccccccC
Confidence            79999999999998843   457889999877643  333333321 21110                 000      01


Q ss_pred             CcChHHHHHHHHHHhCC-CcEEEEEeCCCC
Q 046006           59 NKNSEEKALEIFRFLSK-KKFVLLLDDKWE   87 (180)
Q Consensus        59 ~~~~~~~~~~l~~~L~~-k~~LlVlDdv~~   87 (180)
                      ..+.+.+...+++..+. +..-+|+|++-.
T Consensus       106 ~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~  135 (260)
T COG0467         106 PLDLEELLDRIREIVEKEGADRVVIDSITE  135 (260)
T ss_pred             CccHHHHHHHHHHHHHHhCCCEEEEeCCch
Confidence            23455566666666642 377889999874

>PRK09281 F0F1 ATP synthase subunit alpha; Validated

Probab=94.20  E-value=0.14  Score=42.80  Aligned_cols=82  Identities=12%  Similarity=0.216  Sum_probs=44.4

Q ss_pred             CCCcHHHHHHH-HHcccccccCCCCeE-EEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcC-hHH-----HHHHH
Q 046006            2 GGVGKTTLLTH-INNKFLVSSTDFDCV-IWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKN-SEE-----KALEI   69 (180)
Q Consensus         2 gGiGKTtLA~~-~~~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~-~~~-----~~~~l   69 (180)
                      .|+|||+||.. +.++     ..-+.+ +++-+++.. ...++...+...=.....   ......+ ..+     ..-.+
T Consensus       171 ~g~GKt~lal~~i~~~-----~~~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~a~~~a~ti  245 (502)
T PRK09281        171 RQTGKTAIAIDTIINQ-----KGKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLAPYAGCAM  245 (502)
T ss_pred             CCCCchHHHHHHHHHh-----cCCCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            59999999644 4444     233554 777788765 455566555543221100   0011111 111     12233


Q ss_pred             HHHh--CCCcEEEEEeCCCCc
Q 046006           70 FRFL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        70 ~~~L--~~k~~LlVlDdv~~~   88 (180)
                      .+++  +++.+|+|+||+-..
T Consensus       246 AEyfrd~G~~VLli~DdlTr~  266 (502)
T PRK09281        246 GEYFMDNGKDALIVYDDLSKQ  266 (502)
T ss_pred             HHHHHHcCCCEEEEecCchHH
Confidence            4444  478999999998764

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=94.19  E-value=0.078  Score=37.57  Aligned_cols=38  Identities=26%  Similarity=0.346  Sum_probs=26.8

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEE-----eCCCCCHHHHHHHHHHHh
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIV-----VSKDLQLEKIQEIVGKKV   49 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~-----~~~~~~~~~~~~~i~~~l   49 (180)
                      .|+||||+|..+.+-+.    .     |-.     +... ....+.+.+++.|
T Consensus         8 iGCGKTTva~aL~~LFg----~-----wgHvQnDnI~~k-~~~~f~~~~l~~L   50 (168)
T PF08303_consen    8 IGCGKTTVALALSNLFG----E-----WGHVQNDNITGK-RKPKFIKAVLELL   50 (168)
T ss_pred             CCcCHHHHHHHHHHHcC----C-----CCccccCCCCCC-CHHHHHHHHHHHH
Confidence            59999999999988753    1     322     3333 5677777777777

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>PHA00729 NTP-binding motif containing protein

Probab=94.18  E-value=0.026  Score=42.14  Aligned_cols=40  Identities=18%  Similarity=0.031  Sum_probs=27.6

Q ss_pred             cceEeecCCChhhhHHHHHHH--HHHHHHHH---cCCChHHHHHH
Q 046006          104 NKNFKVECLSDNDAWELLRQK--LAQTVAKK---CVGLPLALITI  143 (180)
Q Consensus       104 ~~~~~l~~L~~~~a~~Lf~~~--~~~~i~~~---c~g~PLal~~~  143 (180)
                      ...+.+.++++++..+.++.+  ...+|.+.   =++-|.++.-+
T Consensus       119 ~~l~il~~ls~edL~~~Lr~Rg~~~~kI~en~~~~~~~~~~~~~~  163 (226)
T PHA00729        119 VSAVIFTTPSPEDLAFYLREKGWYQIRVTMVNRKTMTARATLYSK  163 (226)
T ss_pred             CcEEEEecCCHHHHHHHHHhCCCcHHHhhhcccCcccchhhHHHH
Confidence            357889999999999999998  34444432   34566665543

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=94.18  E-value=0.18  Score=41.33  Aligned_cols=17  Identities=35%  Similarity=0.522  Sum_probs=14.5

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|..++..+
T Consensus       108 ~~GvGKTTtaaKLA~~l  124 (429)
T TIGR01425       108 LQGSGKTTTCTKLAYYY  124 (429)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            47999999999998765

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=94.18  E-value=0.21  Score=41.97  Aligned_cols=80  Identities=14%  Similarity=0.069  Sum_probs=47.6

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC------------CCCCCCcChHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLD------------GDSWKNKNSEEKALEI   69 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~~~~~~~~~~~~~l   69 (180)
                      +|+|||+||.+++....   ..-..++|++...+  ..++.+.. +.++.+.            ...+...+.++....+
T Consensus       282 ~G~GKT~l~~~~~~~~~---~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~i  355 (509)
T PRK09302        282 TGTGKTLLASKFAEAAC---RRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPESYGLEDHLIII  355 (509)
T ss_pred             CCCCHHHHHHHHHHHHH---hCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCcccCCHHHHHHHH
Confidence            79999999999987732   23456788876553  44444433 4444320            0011122445666667


Q ss_pred             HHHhC-CCcEEEEEeCCCC
Q 046006           70 FRFLS-KKKFVLLLDDKWE   87 (180)
Q Consensus        70 ~~~L~-~k~~LlVlDdv~~   87 (180)
                      .+.+. .+.-++|+|.+..
T Consensus       356 ~~~i~~~~~~~vVIDslt~  374 (509)
T PRK09302        356 KREIEEFKPSRVAIDPLSA  374 (509)
T ss_pred             HHHHHHcCCCEEEEcCHHH
Confidence            66664 3555899999754

>PRK13343 F0F1 ATP synthase subunit alpha; Provisional

Probab=94.16  E-value=0.14  Score=42.79  Aligned_cols=82  Identities=15%  Similarity=0.260  Sum_probs=45.4

Q ss_pred             CCCcHHHHH-HHHHcccccccCCCCeE-EEEEeCCCC-CHHHHHHHHHHHhCCCCC----CCCCCcChHH-----HHHHH
Q 046006            2 GGVGKTTLL-THINNKFLVSSTDFDCV-IWIVVSKDL-QLEKIQEIVGKKVGLLDG----DSWKNKNSEE-----KALEI   69 (180)
Q Consensus         2 gGiGKTtLA-~~~~~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~~-----~~~~l   69 (180)
                      +|+|||+|| ..+.++     ..-|.+ +++-+++.. ...++...+...=.....    .........+     ....+
T Consensus       171 ~g~GKt~Lal~~i~~~-----~~~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~~ap~~a~ai  245 (502)
T PRK13343        171 RQTGKTAIAIDAIINQ-----KDSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLAPFAGCAI  245 (502)
T ss_pred             CCCCccHHHHHHHHhh-----cCCCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHHHHHHHHHHH
Confidence            699999996 455554     234554 777788765 455666665543211100    0001111111     12234


Q ss_pred             HHHh--CCCcEEEEEeCCCCc
Q 046006           70 FRFL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        70 ~~~L--~~k~~LlVlDdv~~~   88 (180)
                      .+++  +++++|+|+||+...
T Consensus       246 AEyfrd~G~~VLlv~DdlTr~  266 (502)
T PRK13343        246 AEYFRDQGQDALIVYDDLSKH  266 (502)
T ss_pred             HHHHHhCCCCEEEEecchHHH
Confidence            4555  588999999998754

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=94.15  E-value=0.3  Score=34.54  Aligned_cols=77  Identities=18%  Similarity=0.159  Sum_probs=39.4

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEE-------eCCCCCH--HHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIV-------VSKDLQL--EKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRF   72 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~-------~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~   72 (180)
                      .|.|||||++.++....    ...+.+++.       +.+....  ..+...+...   .   ...-+..+...-.+.+.
T Consensus        36 nGsGKSTLl~~l~G~~~----~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~---~~~LS~G~~~rv~lara  105 (166)
T cd03223          36 SGTGKSSLFRALAGLWP----WGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---W---DDVLSGGEQQRLAFARL  105 (166)
T ss_pred             CCCCHHHHHHHHhcCCC----CCCceEEECCCceEEEECCCCccccccHHHHhhcc---C---CCCCCHHHHHHHHHHHH
Confidence            69999999999988742    223333321       2222211  1233332210   1   11122233334445566


Q ss_pred             hCCCcEEEEEeCCCCc
Q 046006           73 LSKKKFVLLLDDKWER   88 (180)
Q Consensus        73 L~~k~~LlVlDdv~~~   88 (180)
                      +-.++=++++|+--..
T Consensus       106 l~~~p~~lllDEPt~~  121 (166)
T cd03223         106 LLHKPKFVFLDEATSA  121 (166)
T ss_pred             HHcCCCEEEEECCccc
Confidence            6677778899986443

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=94.15  E-value=0.37  Score=39.48  Aligned_cols=51  Identities=25%  Similarity=0.282  Sum_probs=26.8

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLL   52 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~   52 (180)
                      ..|+||||+...++... ......+.+..+.... .....+-+....+.++.+
T Consensus       199 pnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp  250 (420)
T PRK14721        199 PTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVS  250 (420)
T ss_pred             CCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCc
Confidence            36999999999887652 1111223334444322 233444455555555543

>PTZ00301 uridine kinase; Provisional

Probab=94.15  E-value=0.028  Score=41.60  Aligned_cols=17  Identities=35%  Similarity=0.581  Sum_probs=14.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+||||||+.+...+
T Consensus        11 ~SgSGKTTla~~l~~~l   27 (210)
T PTZ00301         11 ASGSGKSSLSTNIVSEL   27 (210)
T ss_pred             CCcCCHHHHHHHHHHHH
Confidence            37999999999987764

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=94.14  E-value=1.8  Score=34.40  Aligned_cols=35  Identities=14%  Similarity=0.094  Sum_probs=28.2

Q ss_pred             ceEeecCCChhhhHHHHHHH------HHHHHHHHcCCChHH
Q 046006          105 KNFKVECLSDNDAWELLRQK------LAQTVAKKCVGLPLA  139 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~------~~~~i~~~c~g~PLa  139 (180)
                      ..+.+.+++.++..+.+.+.      .+..++..++|.|..
T Consensus       160 q~~~~~~~~~~~~~~~L~~~~~~~~~~a~~~~~la~G~~~~  200 (334)
T PRK07993        160 RLHYLAPPPEQYALTWLSREVTMSQDALLAALRLSAGAPGA  200 (334)
T ss_pred             ccccCCCCCHHHHHHHHHHccCCCHHHHHHHHHHcCCCHHH
Confidence            46789999999999888654      456788899999963

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=94.13  E-value=0.28  Score=40.29  Aligned_cols=81  Identities=14%  Similarity=0.080  Sum_probs=41.8

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCH-HHHHHHHHHHhCCCCCC---CCCCcChH------HHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQL-EKIQEIVGKKVGLLDGD---SWKNKNSE------EKALEIFR   71 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~~~l~~~~~~---~~~~~~~~------~~~~~l~~   71 (180)
                      +|+|||||++.++...     .-+..+..-+++...- .++....+..- .+...   .....++.      .....+.+
T Consensus       166 sG~GKStLl~~i~~~~-----~~~v~vi~~iGergrev~e~~~~~l~~~-l~~tvvV~atsddsp~~R~~~~~~a~~iAE  239 (434)
T PRK08472        166 SGVGKSTLMGMIVKGC-----LAPIKVVALIGERGREIPEFIEKNLGGD-LENTVIVVATSDDSPLMRKYGAFCAMSVAE  239 (434)
T ss_pred             CCCCHHHHHHHHhhcc-----CCCEEEEEeeCccchhHHHHHHHHhcCc-ccceEEEEECCCCCHHHhhHHHHHHHHHHH
Confidence            6999999999998762     2344455555554432 33333222110 00000   00111111      11233444


Q ss_pred             Hh--CCCcEEEEEeCCCCc
Q 046006           72 FL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        72 ~L--~~k~~LlVlDdv~~~   88 (180)
                      ++  +++.+|+++||+-..
T Consensus       240 yFrd~G~~Vll~~DslTr~  258 (434)
T PRK08472        240 YFKNQGLDVLFIMDSVTRF  258 (434)
T ss_pred             HHHHcCCCEEEecccchHH
Confidence            44  588999999998754

>PRK06547 hypothetical protein; Provisional

Probab=94.12  E-value=0.033  Score=39.88  Aligned_cols=17  Identities=35%  Similarity=0.446  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        23 ~~GsGKTt~a~~l~~~~   39 (172)
T PRK06547         23 RSGSGKTTLAGALAART   39 (172)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999998764

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=94.12  E-value=0.029  Score=40.22  Aligned_cols=17  Identities=35%  Similarity=0.395  Sum_probs=14.8

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.++..+
T Consensus        11 ~~GsGKsTl~~~l~~~~   27 (188)
T TIGR01360        11 GPGSGKGTQCEKIVEKY   27 (188)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            48999999999998764

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=94.09  E-value=0.47  Score=33.83  Aligned_cols=74  Identities=15%  Similarity=0.214  Sum_probs=39.3

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCC--CcEE
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSK--KKFV   79 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~--k~~L   79 (180)
                      +|+|||++|.++....      ....+++.-.+.++. ++...|.+.-... ....   ...+....+.+.+..  +.-.
T Consensus         8 ~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~-em~~rI~~H~~~R-~~~w---~t~E~~~~l~~~l~~~~~~~~   76 (169)
T cd00544           8 ARSGKSRFAERLAAEL------GGPVTYIATAEAFDD-EMAERIARHRKRR-PAHW---RTIETPRDLVSALKELDPGDV   76 (169)
T ss_pred             CCCCHHHHHHHHHHhc------CCCeEEEEccCcCCH-HHHHHHHHHHHhC-CCCc---eEeecHHHHHHHHHhcCCCCE
Confidence            6999999999997651      135667766665544 3444444422111 1111   122222334444421  3347


Q ss_pred             EEEeCCC
Q 046006           80 LLLDDKW   86 (180)
Q Consensus        80 lVlDdv~   86 (180)
                      +++|.+.
T Consensus        77 VLIDclt   83 (169)
T cd00544          77 VLIDCLT   83 (169)
T ss_pred             EEEEcHh
Confidence            9999864

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PRK04040 adenylate kinase; Provisional

Probab=94.08  E-value=0.03  Score=40.67  Aligned_cols=17  Identities=47%  Similarity=0.667  Sum_probs=15.5

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+++.+...+
T Consensus        10 ~pG~GKtt~~~~l~~~l   26 (188)
T PRK04040         10 VPGVGKTTVLNKALEKL   26 (188)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999998885

>PRK14532 adenylate kinase; Provisional

Probab=94.07  E-value=0.032  Score=40.22  Aligned_cols=17  Identities=18%  Similarity=0.104  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +||+||||+|+.++..+
T Consensus         8 ~pGsGKsT~a~~la~~~   24 (188)
T PRK14532          8 PPAAGKGTQAKRLVEER   24 (188)
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            58999999999998874

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=94.07  E-value=0.033  Score=35.98  Aligned_cols=17  Identities=41%  Similarity=0.642  Sum_probs=14.7

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++..+.
T Consensus         9 gG~Gkst~~~~la~~~~   25 (104)
T cd02042           9 GGVGKTTTAVNLAAALA   25 (104)
T ss_pred             CCcCHHHHHHHHHHHHH
Confidence            89999999999887753

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=94.06  E-value=0.1  Score=46.54  Aligned_cols=17  Identities=29%  Similarity=0.372  Sum_probs=14.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||.||+.++..+
T Consensus       604 p~GvGKT~lA~~La~~l  620 (852)
T TIGR03345       604 PSGVGKTETALALAELL  620 (852)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            47999999999987764

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=94.05  E-value=0.25  Score=34.12  Aligned_cols=25  Identities=28%  Similarity=0.411  Sum_probs=18.6

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEE
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWI   30 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv   30 (180)
                      .|.|||||++.++...    ....+.+++
T Consensus        35 nGsGKStLl~~l~G~~----~~~~G~i~~   59 (144)
T cd03221          35 NGAGKSTLLKLIAGEL----EPDEGIVTW   59 (144)
T ss_pred             CCCCHHHHHHHHcCCC----CCCceEEEE
Confidence            6999999999998874    233555554

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK13949 shikimate kinase; Provisional

Probab=94.05  E-value=0.032  Score=39.74  Aligned_cols=17  Identities=35%  Similarity=0.446  Sum_probs=15.5

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      |+|+||||+++.++..+
T Consensus         9 ~~GsGKstl~~~La~~l   25 (169)
T PRK13949          9 YMGAGKTTLGKALAREL   25 (169)
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            58999999999999885

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=94.03  E-value=0.035  Score=39.66  Aligned_cols=17  Identities=35%  Similarity=0.524  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||||++.++..+
T Consensus         9 ~sGsGKttl~~~l~~~~   25 (179)
T TIGR02322         9 PSGAGKDTLLDYARARL   25 (179)
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            58999999999998874

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase

Probab=94.03  E-value=0.064  Score=40.85  Aligned_cols=17  Identities=29%  Similarity=0.638  Sum_probs=15.1

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++.-+.
T Consensus        10 GGvGKTT~~~nLA~~La   26 (270)
T cd02040          10 GGIGKSTTTQNLSAALA   26 (270)
T ss_pred             CcCCHHHHHHHHHHHHH
Confidence            89999999999988864

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=94.02  E-value=0.032  Score=39.48  Aligned_cols=17  Identities=18%  Similarity=0.579  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus         3 ~sGsGKSTla~~la~~l   19 (163)
T PRK11545          3 VSGSGKSAVASEVAHQL   19 (163)
T ss_pred             CCCCcHHHHHHHHHHHh
Confidence            47999999999998885

>PRK10865 protein disaggregation chaperone; Provisional

Probab=94.02  E-value=0.16  Score=45.34  Aligned_cols=17  Identities=41%  Similarity=0.493  Sum_probs=14.8

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||+||+.+++..
T Consensus       606 p~G~GKT~lA~aLa~~l  622 (857)
T PRK10865        606 PTGVGKTELCKALANFM  622 (857)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999998764

>PRK13231 nitrogenase reductase-like protein; Reviewed

Probab=94.00  E-value=0.088  Score=40.13  Aligned_cols=17  Identities=29%  Similarity=0.741  Sum_probs=15.6

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++..+.
T Consensus        11 GGvGKTT~a~nLA~~La   27 (264)
T PRK13231         11 GGIGKSTTVSNMAAAYS   27 (264)
T ss_pred             CCCcHHHHHHHHhcccC
Confidence            89999999999999864

>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]

Probab=93.99  E-value=0.2  Score=39.50  Aligned_cols=52  Identities=27%  Similarity=0.321  Sum_probs=34.1

Q ss_pred             CCCCcHHHHHHHHHcccccccCCC-------CeEEEEEeCC-CCCHHHHHHHHHHHhCCC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDF-------DCVIWIVVSK-DLQLEKIQEIVGKKVGLL   52 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f-------~~~~wv~~~~-~~~~~~~~~~i~~~l~~~   52 (180)
                      .||+|||||+..++=.+..-++-|       ..+++|+... ..++..-++.++.+++.+
T Consensus        97 dsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLs  156 (402)
T COG3598          97 DSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLS  156 (402)
T ss_pred             CCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCC
Confidence            389999999988764432222333       3566776543 346666777888888876

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=93.99  E-value=0.21  Score=41.16  Aligned_cols=82  Identities=22%  Similarity=0.244  Sum_probs=42.6

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCC---CCCCCcChH------HHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD-LQLEKIQEIVGKKVGLLDG---DSWKNKNSE------EKALEIFR   71 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~------~~~~~l~~   71 (180)
                      +|+|||||.+.+....    .. +..+...++.. ....++....+..-.....   ......++.      ...-.+.+
T Consensus       172 sG~GKStLl~~I~~~~----~~-~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~~~~~a~t~AE  246 (440)
T TIGR01026       172 SGVGKSTLLGMIARNT----EA-DVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKGAYVATAIAE  246 (440)
T ss_pred             CCCCHHHHHHHHhCCC----CC-CEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            6999999999998873    22 33344444443 3444555444432111100   001111111      11223334


Q ss_pred             Hh--CCCcEEEEEeCCCCc
Q 046006           72 FL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        72 ~L--~~k~~LlVlDdv~~~   88 (180)
                      ++  +++.+|+++||+-..
T Consensus       247 ~frd~G~~Vll~~DslTr~  265 (440)
T TIGR01026       247 YFRDQGKDVLLLMDSVTRF  265 (440)
T ss_pred             HHHHCCCCEEEEEeChHHH
Confidence            44  588999999998653

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>TIGR00235 udk uridine kinase

Probab=93.99  E-value=0.035  Score=40.79  Aligned_cols=17  Identities=35%  Similarity=0.497  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||||+.++..+
T Consensus        14 ~sGsGKSTl~~~l~~~l   30 (207)
T TIGR00235        14 GSGSGKTTVARKIYEQL   30 (207)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999998875

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK05480 uridine/cytidine kinase; Provisional

Probab=93.97  E-value=0.033  Score=40.93  Aligned_cols=17  Identities=35%  Similarity=0.507  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+||||||+.+...+
T Consensus        14 ~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480         14 GSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            37999999999998875

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=93.96  E-value=0.44  Score=39.01  Aligned_cols=82  Identities=21%  Similarity=0.216  Sum_probs=43.2

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChH------HHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSE------EKALEIFR   71 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~------~~~~~l~~   71 (180)
                      +|+|||||.+.+++..     +-+..+..-+++.. ...++....+.+-+....   ......+..      ...-.+.+
T Consensus       146 sG~GKTtLl~~i~~~~-----~~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~~~~a~tiAE  220 (413)
T TIGR03497       146 SGVGKSTLLGMIARNA-----KADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAFTATAIAE  220 (413)
T ss_pred             CCCCHHHHHHHHhCCC-----CCCeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            6999999999888763     12333333345433 455555554433211100   001111111      12233444


Q ss_pred             Hh--CCCcEEEEEeCCCCc
Q 046006           72 FL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        72 ~L--~~k~~LlVlDdv~~~   88 (180)
                      ++  +++.+|+++||+-..
T Consensus       221 yfr~~G~~Vll~~Dsltr~  239 (413)
T TIGR03497       221 YFRDQGKDVLLMMDSVTRF  239 (413)
T ss_pred             HHHHCCCCEEEEEcCcHHH
Confidence            55  488999999998653

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=93.95  E-value=0.7  Score=36.58  Aligned_cols=36  Identities=19%  Similarity=0.229  Sum_probs=25.5

Q ss_pred             ceEeecCCChhhhHHHHHHH---HHHHHHHHcCCChHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK---LAQTVAKKCVGLPLAL  140 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~---~~~~i~~~c~g~PLal  140 (180)
                      ..+.+.+++.++..+.+.+.   .....+..++|.|+..
T Consensus       165 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~l~~~~g~p~~~  203 (325)
T PRK08699        165 RKMVLPAPSHEEALAYLRERGVAEPEERLAFHSGAPLFD  203 (325)
T ss_pred             hhhcCCCCCHHHHHHHHHhcCCCcHHHHHHHhCCChhhh
Confidence            56788999999999888765   2222346788988643

>PRK06696 uridine kinase; Validated

Probab=93.94  E-value=0.036  Score=41.29  Aligned_cols=17  Identities=24%  Similarity=0.442  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+||||||+.+...+
T Consensus        30 ~sgsGKSTlA~~L~~~l   46 (223)
T PRK06696         30 ITASGKTTFADELAEEI   46 (223)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            47999999999999886

>PRK13975 thymidylate kinase; Provisional

Probab=93.87  E-value=0.035  Score=40.21  Aligned_cols=18  Identities=33%  Similarity=0.446  Sum_probs=15.9

Q ss_pred             CCCCcHHHHHHHHHcccc
Q 046006            1 MGGVGKTTLLTHINNKFL   18 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~   18 (180)
                      +.|+||||+|+.++..+.
T Consensus        10 ~~GsGKtT~~~~L~~~l~   27 (196)
T PRK13975         10 IDGSGKTTQAKLLAEKLN   27 (196)
T ss_pred             CCCCCHHHHHHHHHHHhC
Confidence            479999999999999863

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=93.87  E-value=0.094  Score=40.10  Aligned_cols=35  Identities=31%  Similarity=0.346  Sum_probs=22.1

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKI   41 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~   41 (180)
                      .+|+|||+||+.++....   .   ..+.++.....+..++
T Consensus        29 ~~GtGKT~lA~~la~~lg---~---~~~~i~~~~~~~~~dl   63 (262)
T TIGR02640        29 PAGTGKTTLAMHVARKRD---R---PVMLINGDAELTTSDL   63 (262)
T ss_pred             CCCCCHHHHHHHHHHHhC---C---CEEEEeCCccCCHHHH
Confidence            479999999999987531   1   2344555544444444

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=93.84  E-value=0.3  Score=34.87  Aligned_cols=77  Identities=10%  Similarity=0.065  Sum_probs=39.2

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCC-CcChHHHHHHHHHHhCCCcEEE
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWK-NKNSEEKALEIFRFLSKKKFVL   80 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~l~~~L~~k~~Ll   80 (180)
                      +|+|||++|..+.....   .   ..+++.-.. ..-.++...|....... ..... .....++...+.....+ .-++
T Consensus        10 ~~sGKS~~a~~l~~~~~---~---~~~~iat~~-~~~~e~~~ri~~h~~~R-~~~w~t~E~~~~l~~~i~~~~~~-~~~V   80 (170)
T PRK05800         10 ARSGKSRFAERLAAQSG---L---QVLYIATAQ-PFDDEMAARIAHHRQRR-PAHWQTVEEPLDLAELLRADAAP-GRCV   80 (170)
T ss_pred             CCccHHHHHHHHHHHcC---C---CcEeCcCCC-CChHHHHHHHHHHHhcC-CCCCeEecccccHHHHHHhhcCC-CCEE
Confidence            79999999999987631   1   133443333 33345556665544322 11111 11122344444443433 3378


Q ss_pred             EEeCCCC
Q 046006           81 LLDDKWE   87 (180)
Q Consensus        81 VlDdv~~   87 (180)
                      ++|.+..
T Consensus        81 lID~Lt~   87 (170)
T PRK05800         81 LVDCLTT   87 (170)
T ss_pred             EehhHHH
Confidence            8888643

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=93.84  E-value=0.31  Score=35.04  Aligned_cols=16  Identities=31%  Similarity=0.557  Sum_probs=14.2

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      .|+|||||.+.++.-.
T Consensus        34 nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          34 NGTGKTTAVKILAGQL   49 (177)
T ss_pred             CCChHHHHHHHHHcCC
Confidence            6999999999998764

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>CHL00060 atpB ATP synthase CF1 beta subunit

Probab=93.84  E-value=0.18  Score=41.99  Aligned_cols=85  Identities=16%  Similarity=0.212  Sum_probs=50.0

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC-----C-----CCCCcChH------H
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG-----D-----SWKNKNSE------E   64 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~-----~~~~~~~~------~   64 (180)
                      +|+|||+|+..+......  .+=+.++++-+++.. ...++...+...-.....     .     .....+..      -
T Consensus       170 ~GvGKs~L~~~~~~~~~~--~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~~~R~~a~~  247 (494)
T CHL00060        170 AGVGKTVLIMELINNIAK--AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGL  247 (494)
T ss_pred             CCCChhHHHHHHHHHHHH--hcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCHHHHHHHHH
Confidence            699999999988776321  222678888887765 456677666652111100     0     01111111      2


Q ss_pred             HHHHHHHHhC--CC-cEEEEEeCCCCc
Q 046006           65 KALEIFRFLS--KK-KFVLLLDDKWER   88 (180)
Q Consensus        65 ~~~~l~~~L~--~k-~~LlVlDdv~~~   88 (180)
                      ..-.+.++++  ++ .+||++||+-..
T Consensus       248 ~A~tiAEyfrd~g~~~VLll~DslTR~  274 (494)
T CHL00060        248 TALTMAEYFRDVNKQDVLLFIDNIFRF  274 (494)
T ss_pred             HHHHHHHHHHHcCCCCEEEEcccchHH
Confidence            2344667773  44 999999998754

>PRK02118 V-type ATP synthase subunit B; Provisional

Probab=93.82  E-value=0.38  Score=39.51  Aligned_cols=82  Identities=18%  Similarity=0.122  Sum_probs=47.9

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChH------HHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSE------EKALEIFR   71 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~------~~~~~l~~   71 (180)
                      +|+|||+|+..++++.     .-+.+++.-+++.. ...++..++...=..+..   ......+..      ...-.+.+
T Consensus       149 aGvgk~~L~~~ia~~~-----~~~v~Vfa~iGeR~rE~~ef~~~~~~~~~l~rtvlv~~~adep~~~R~~~~~~AltiAE  223 (436)
T PRK02118        149 SGEPYNALLARIALQA-----EADIIILGGMGLTFDDYLFFKDTFENAGALDRTVMFIHTASDPPVECLLVPDMALAVAE  223 (436)
T ss_pred             CCCCHHHHHHHHHHhh-----CCCeEEEEEeccchhHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            5999999999998883     22567888888765 444555555433211100   001111111      12334555


Q ss_pred             HhC---CCcEEEEEeCCCCc
Q 046006           72 FLS---KKKFVLLLDDKWER   88 (180)
Q Consensus        72 ~L~---~k~~LlVlDdv~~~   88 (180)
                      +++   ++.+|+++||+-..
T Consensus       224 yfrd~g~~~VLli~DdlTr~  243 (436)
T PRK02118        224 KFALEGKKKVLVLLTDMTNF  243 (436)
T ss_pred             HHHhcCCCCEEEeccCchHH
Confidence            553   38999999999764

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=93.76  E-value=0.038  Score=38.23  Aligned_cols=17  Identities=35%  Similarity=0.442  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus         7 ~~GsGKstla~~la~~l   23 (154)
T cd00464           7 MMGAGKTTVGRLLAKAL   23 (154)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999998774

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=93.72  E-value=0.038  Score=40.11  Aligned_cols=16  Identities=31%  Similarity=0.372  Sum_probs=14.6

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      +|+||||||+.+...+
T Consensus         8 sgsGKTtla~~l~~~~   23 (187)
T cd02024           8 TNSGKTTLAKLLQRIL   23 (187)
T ss_pred             CCCCHHHHHHHHHHHc
Confidence            7999999999998875

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK14530 adenylate kinase; Provisional

Probab=93.65  E-value=0.039  Score=40.79  Aligned_cols=17  Identities=29%  Similarity=0.515  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.++..+
T Consensus        11 ~pGsGKsT~~~~La~~~   27 (215)
T PRK14530         11 APGAGKGTQSSNLAEEF   27 (215)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999998775

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=93.63  E-value=0.26  Score=41.37  Aligned_cols=31  Identities=13%  Similarity=0.126  Sum_probs=21.0

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK   34 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~   34 (180)
                      +|+|||+||.+++....  .++-..++|++...
T Consensus        40 pGsGKT~l~~qf~~~~~--~~~ge~~lyis~ee   70 (509)
T PRK09302         40 AGTGKTLFALQFLVNGI--KRFDEPGVFVTFEE   70 (509)
T ss_pred             CCCCHHHHHHHHHHHHH--HhcCCCEEEEEccC
Confidence            79999999999876532  12234567776554

>PRK00889 adenylylsulfate kinase; Provisional

Probab=93.62  E-value=0.045  Score=38.97  Aligned_cols=17  Identities=35%  Similarity=0.665  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.++..+
T Consensus        12 ~~GsGKST~a~~la~~l   28 (175)
T PRK00889         12 LSGAGKTTIARALAEKL   28 (175)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            48999999999999885

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=93.62  E-value=0.045  Score=39.81  Aligned_cols=17  Identities=35%  Similarity=0.468  Sum_probs=14.7

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+||||||+.+...+
T Consensus         7 ~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           7 GSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999998764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR00602 rad24 checkpoint protein rad24

Probab=93.61  E-value=0.041  Score=47.31  Aligned_cols=17  Identities=24%  Similarity=0.501  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+++.++..+
T Consensus       118 P~GsGKTTl~~~la~~l  134 (637)
T TIGR00602       118 PSGCGKSTTIKILSKEL  134 (637)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999999874

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=93.57  E-value=0.043  Score=37.57  Aligned_cols=17  Identities=29%  Similarity=0.487  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus         7 ~~GsGKst~a~~la~~~   23 (147)
T cd02020           7 PAGSGKSTVAKLLAKKL   23 (147)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999999874

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=93.53  E-value=0.15  Score=42.06  Aligned_cols=82  Identities=16%  Similarity=0.122  Sum_probs=41.7

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC---CCCCCCcChHH------HHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLD---GDSWKNKNSEE------KALEIFR   71 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~---~~~~~~~~~~~------~~~~l~~   71 (180)
                      +|+|||||.+.++...     +.+.++...+.... ...++.+.+...-..+.   .......+...      ..-.+.+
T Consensus       184 sG~GKTTLL~~Ia~~~-----~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ad~~~~~r~~~~~~a~tiAE  258 (455)
T PRK07960        184 SGVGKSVLLGMMARYT-----QADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAE  258 (455)
T ss_pred             CCCCccHHHHHHhCCC-----CCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            6999999999998773     22334443343322 44444444332111100   00111122211      1223444


Q ss_pred             Hh--CCCcEEEEEeCCCCc
Q 046006           72 FL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        72 ~L--~~k~~LlVlDdv~~~   88 (180)
                      ++  +++.+|+++||+-..
T Consensus       259 yfrd~G~~Vll~~DslTr~  277 (455)
T PRK07960        259 DFRDRGQHVLLIMDSLTRY  277 (455)
T ss_pred             HHHHcCCCeEEEecchhHH
Confidence            44  488999999998654

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=93.52  E-value=0.37  Score=37.20  Aligned_cols=49  Identities=22%  Similarity=0.273  Sum_probs=30.8

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEe---------CCCCCHHHH--HHHHHHHhCCC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVV---------SKDLQLEKI--QEIVGKKVGLL   52 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~---------~~~~~~~~~--~~~i~~~l~~~   52 (180)
                      |.|+||||..+.+..+..   ..+....-|++         .-+.++++.  .+++.++.+..
T Consensus        27 MAGSGKTTF~QrL~~hl~---~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LG   86 (366)
T KOG1532|consen   27 MAGSGKTTFMQRLNSHLH---AKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLG   86 (366)
T ss_pred             cCCCCchhHHHHHHHHHh---hccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCC
Confidence            789999999999988864   22322333332         113355553  56778887664

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=93.51  E-value=0.041  Score=38.21  Aligned_cols=17  Identities=24%  Similarity=0.429  Sum_probs=15.5

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +||+||||+|+.++..+
T Consensus         4 ~PgsGK~t~~~~la~~~   20 (151)
T PF00406_consen    4 PPGSGKGTQAKRLAKRY   20 (151)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHhc
Confidence            58999999999999985

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=93.48  E-value=0.16  Score=35.89  Aligned_cols=26  Identities=23%  Similarity=0.357  Sum_probs=20.0

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEE
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIV   31 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~   31 (180)
                      .|+|||||.+.++...    ....+.+++.
T Consensus        35 nGsGKSTLl~~i~G~~----~~~~G~v~~~   60 (163)
T cd03216          35 NGAGKSTLMKILSGLY----KPDSGEILVD   60 (163)
T ss_pred             CCCCHHHHHHHHhCCC----CCCCeEEEEC
Confidence            6999999999998874    3456666654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13946 shikimate kinase; Provisional

Probab=93.45  E-value=0.048  Score=39.34  Aligned_cols=17  Identities=24%  Similarity=0.417  Sum_probs=15.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      |+|+||||+++.+...+
T Consensus        18 ~~GsGKsti~~~LA~~L   34 (184)
T PRK13946         18 LMGAGKSTVGRRLATML   34 (184)
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            68999999999999885

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=93.42  E-value=0.045  Score=41.44  Aligned_cols=17  Identities=35%  Similarity=0.665  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus         7 ~pGSGKST~a~~La~~l   23 (249)
T TIGR03574         7 LPGVGKSTFSKELAKKL   23 (249)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            58999999999998875

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]

Probab=93.42  E-value=0.33  Score=37.64  Aligned_cols=75  Identities=11%  Similarity=0.023  Sum_probs=54.6

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEE-EEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIW-IVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV   79 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~w-v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L   79 (180)
                      +.|+|||+-++.+++..+        ..| +..+..++...++..++......     ......+....+...+++..-+
T Consensus       102 ~~g~gKt~a~~~y~~s~p--------~~~l~~~~p~~~a~~~i~~i~~~~~~~-----~~~~~~d~~~~~~~~l~~~~~~  168 (297)
T COG2842         102 YAGLGKTQAAKNYAPSNP--------NALLIEADPSYTALVLILIICAAAFGA-----TDGTINDLTERLMIRLRDTVRL  168 (297)
T ss_pred             cccchhHHHHHhhcccCc--------cceeecCChhhHHHHHHHHHHHHHhcc-----cchhHHHHHHHHHHHHccCcce
Confidence            479999999999998853        344 45666777777777776665432     2234566777777788899999


Q ss_pred             EEEeCCCCc
Q 046006           80 LLLDDKWER   88 (180)
Q Consensus        80 lVlDdv~~~   88 (180)
                      ++.|+.+..
T Consensus       169 iivDEA~~L  177 (297)
T COG2842         169 IIVDEADRL  177 (297)
T ss_pred             eeeehhhcc
Confidence            999998775

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=93.41  E-value=0.23  Score=38.87  Aligned_cols=63  Identities=19%  Similarity=0.198  Sum_probs=39.6

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC-CCcEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS-KKKFV   79 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~-~k~~L   79 (180)
                      +||.||+.||++|+..-    +    .-|.++|++        ++......         ..+.+...|.+.-+ +++.+
T Consensus       174 PPGTGKSYLAKAVATEA----n----STFFSvSSS--------DLvSKWmG---------ESEkLVknLFemARe~kPSI  228 (439)
T KOG0739|consen  174 PPGTGKSYLAKAVATEA----N----STFFSVSSS--------DLVSKWMG---------ESEKLVKNLFEMARENKPSI  228 (439)
T ss_pred             CCCCcHHHHHHHHHhhc----C----CceEEeehH--------HHHHHHhc---------cHHHHHHHHHHHHHhcCCcE
Confidence            58999999999999872    1    223344432        22222211         13456666666554 78999


Q ss_pred             EEEeCCCCc
Q 046006           80 LLLDDKWER   88 (180)
Q Consensus        80 lVlDdv~~~   88 (180)
                      |.+|.++..
T Consensus       229 IFiDEiDsl  237 (439)
T KOG0739|consen  229 IFIDEIDSL  237 (439)
T ss_pred             EEeehhhhh
Confidence            999999854

>PF13245 AAA_19: Part of AAA domain

Probab=93.40  E-value=0.1  Score=32.04  Aligned_cols=16  Identities=38%  Similarity=0.326  Sum_probs=10.9

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      .||.|||+++.+....
T Consensus        18 ~pGtGKT~~~~~~i~~   33 (76)
T PF13245_consen   18 PPGTGKTTTLAARIAE   33 (76)
T ss_pred             CCCCCHHHHHHHHHHH
Confidence            4899999655554444

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=93.39  E-value=0.049  Score=39.28  Aligned_cols=17  Identities=29%  Similarity=0.434  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.++..+
T Consensus         7 ~pGsGKst~a~~La~~~   23 (194)
T cd01428           7 PPGSGKGTQAERLAKKY   23 (194)
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            58999999999998874

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=93.38  E-value=0.053  Score=38.93  Aligned_cols=83  Identities=16%  Similarity=0.112  Sum_probs=44.6

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEE-------eCC--CCCHHHHHHHH------HHHhCCCC--CCCCCCcChH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIV-------VSK--DLQLEKIQEIV------GKKVGLLD--GDSWKNKNSE   63 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~-------~~~--~~~~~~~~~~i------~~~l~~~~--~~~~~~~~~~   63 (180)
                      ++|.||||+|..+...+.   ..--...-+.       ++.  .|+.++-..+|      ++.+.-..  .-..-.+...
T Consensus        31 LSGsGKSTiA~ale~~L~---~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~iviva~ISP~r  107 (197)
T COG0529          31 LSGSGKSTIANALEEKLF---AKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLIVIVAFISPYR  107 (197)
T ss_pred             CCCCCHHHHHHHHHHHHH---HcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCeEEEEEeeCccH
Confidence            589999999999998863   2221222222       111  23333322222      23332110  0011233455


Q ss_pred             HHHHHHHHHhCCCcEEEEEeCCC
Q 046006           64 EKALEIFRFLSKKKFVLLLDDKW   86 (180)
Q Consensus        64 ~~~~~l~~~L~~k~~LlVlDdv~   86 (180)
                      +-.+..++.+...+|+=|+=|+.
T Consensus       108 ~~R~~aR~~~~~~~FiEVyV~~p  130 (197)
T COG0529         108 EDRQMARELLGEGEFIEVYVDTP  130 (197)
T ss_pred             HHHHHHHHHhCcCceEEEEeCCC
Confidence            66677888888888988887764

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=93.37  E-value=2  Score=37.65  Aligned_cols=63  Identities=25%  Similarity=0.227  Sum_probs=39.7

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh-CCCcEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL-SKKKFV   79 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~L   79 (180)
                      +||+|||-||.+++...     .   .-++++-.+        +++...-..         .++..+.+.+.- .-++|+
T Consensus       709 ppGcGKT~la~a~a~~~-----~---~~fisvKGP--------ElL~KyIGa---------SEq~vR~lF~rA~~a~PCi  763 (952)
T KOG0735|consen  709 PPGCGKTLLASAIASNS-----N---LRFISVKGP--------ELLSKYIGA---------SEQNVRDLFERAQSAKPCI  763 (952)
T ss_pred             CCCCcHHHHHHHHHhhC-----C---eeEEEecCH--------HHHHHHhcc---------cHHHHHHHHHHhhccCCeE
Confidence            58999999999998873     1   335555432        233332121         234444444444 468999


Q ss_pred             EEEeCCCCc
Q 046006           80 LLLDDKWER   88 (180)
Q Consensus        80 lVlDdv~~~   88 (180)
                      |.||+.++.
T Consensus       764 LFFDEfdSi  772 (952)
T KOG0735|consen  764 LFFDEFDSI  772 (952)
T ss_pred             EEecccccc
Confidence            999999875

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=93.37  E-value=0.049  Score=42.26  Aligned_cols=17  Identities=29%  Similarity=0.358  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+..++
T Consensus        10 ~pGSGKSTla~~L~~~~   26 (300)
T PHA02530         10 VPGSGKSTWAREFAAKN   26 (300)
T ss_pred             CCCCCHHHHHHHHHHHC
Confidence            48999999999998874

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=93.37  E-value=0.052  Score=38.69  Aligned_cols=17  Identities=47%  Similarity=0.665  Sum_probs=14.7

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||||.+.+++.+
T Consensus         7 ~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    7 PPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             -TTSSHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHh
Confidence            37999999999998876

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK13886 conjugal transfer protein TraL; Provisional

Probab=93.33  E-value=0.22  Score=37.60  Aligned_cols=16  Identities=38%  Similarity=0.555  Sum_probs=14.1

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      ||+|||+.|..++..+
T Consensus        12 GGvGKSt~a~~la~~l   27 (241)
T PRK13886         12 GGVGKSFIAATIAQYK   27 (241)
T ss_pred             CCCcHHHHHHHHHHHH
Confidence            8999999999988765

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=93.33  E-value=0.052  Score=38.47  Aligned_cols=17  Identities=41%  Similarity=0.681  Sum_probs=15.1

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++..+.
T Consensus         9 gG~GKtt~a~~la~~l~   25 (179)
T cd02036           9 GGVGKTTTTANLGTALA   25 (179)
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            89999999999988763

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=93.32  E-value=0.049  Score=38.57  Aligned_cols=17  Identities=35%  Similarity=0.630  Sum_probs=15.1

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++..+.
T Consensus         9 gG~GKTt~a~~LA~~la   25 (169)
T cd02037           9 GGVGKSTVAVNLALALA   25 (169)
T ss_pred             CcCChhHHHHHHHHHHH
Confidence            89999999999988763

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=93.32  E-value=0.46  Score=41.79  Aligned_cols=80  Identities=19%  Similarity=0.260  Sum_probs=42.3

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV   79 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L   79 (180)
                      +.|+||||.+..++..+. .......+..++... .....+-+....+.++.+ .  ....+.+++...+. .++++. +
T Consensus       193 pnGvGKTTTiaKLA~~~~-~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvp-v--~~~~~~~~l~~al~-~~~~~D-~  266 (767)
T PRK14723        193 PTGVGKTTTTAKLAARCV-AREGADQLALLTTDSFRIGALEQLRIYGRILGVP-V--HAVKDAADLRFALA-ALGDKH-L  266 (767)
T ss_pred             CCCCcHHHHHHHHHhhHH-HHcCCCeEEEecCcccchHHHHHHHHHHHhCCCC-c--cccCCHHHHHHHHH-HhcCCC-E
Confidence            469999999999987752 111112344554332 223445566666666654 1  12234455444443 334443 5


Q ss_pred             EEEeCCC
Q 046006           80 LLLDDKW   86 (180)
Q Consensus        80 lVlDdv~   86 (180)
                      +++|=.-
T Consensus       267 VLIDTAG  273 (767)
T PRK14723        267 VLIDTVG  273 (767)
T ss_pred             EEEeCCC
Confidence            6666654

>PRK04192 V-type ATP synthase subunit A; Provisional

Probab=93.29  E-value=1  Score=38.41  Aligned_cols=81  Identities=17%  Similarity=0.220  Sum_probs=48.7

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCCC----------CCCCcChHHH-----
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDGD----------SWKNKNSEEK-----   65 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----------~~~~~~~~~~-----   65 (180)
                      .|+|||+|+.+++++     .+-|.++++-+++.. ...+++.++-+........          ...+.+....     
T Consensus       236 ~G~GKTvl~~~iak~-----a~adivVyvg~GERg~E~~e~l~ef~~l~dp~~g~~~m~RTvlVanTSn~Pv~aR~~s~y  310 (586)
T PRK04192        236 FGSGKTVTQHQLAKW-----ADADIVIYVGCGERGNEMTEVLEEFPELIDPKTGRPLMERTVLIANTSNMPVAAREASIY  310 (586)
T ss_pred             CCCCHHHHHHHHHhc-----CCCCEEEEEEcCcChHHHHHHHHHHHhhcccccccccceeEEEEEECCCCCHHHHHHHHH
Confidence            599999999999988     244788888888765 4555666654432211000          1112222211     


Q ss_pred             -HHHHHHHh--CCCcEEEEEeCCCC
Q 046006           66 -ALEIFRFL--SKKKFVLLLDDKWE   87 (180)
Q Consensus        66 -~~~l~~~L--~~k~~LlVlDdv~~   87 (180)
                       .-.+.+++  .++.+|+++|+...
T Consensus       311 tgiTiAEYfRd~G~~Vllm~DStSR  335 (586)
T PRK04192        311 TGITIAEYYRDMGYDVLLMADSTSR  335 (586)
T ss_pred             HHHHHHHHHHHCCCCEEEEecChHH
Confidence             22234444  48899999999854

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=93.29  E-value=0.095  Score=42.84  Aligned_cols=17  Identities=29%  Similarity=0.386  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||+||+.+...+
T Consensus        58 p~G~GKT~LAr~LAk~l   74 (443)
T PRK05201         58 PTGVGKTEIARRLAKLA   74 (443)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999998875

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=93.28  E-value=0.095  Score=41.74  Aligned_cols=80  Identities=13%  Similarity=0.080  Sum_probs=42.7

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL   80 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll   80 (180)
                      ..|+||||+.+.+.+...   ......++.. ..+...  ..... ..+-..  ... ..+.......++..|+..+=.+
T Consensus       130 ~tGSGKTT~l~al~~~i~---~~~~~~i~ti-Edp~E~--~~~~~-~~~i~q--~ev-g~~~~~~~~~l~~~lr~~pd~i  199 (343)
T TIGR01420       130 PTGSGKSTTLASMIDYIN---KNAAGHIITI-EDPIEY--VHRNK-RSLINQ--REV-GLDTLSFANALRAALREDPDVI  199 (343)
T ss_pred             CCCCCHHHHHHHHHHhhC---cCCCCEEEEE-cCChhh--hccCc-cceEEc--ccc-CCCCcCHHHHHHHhhccCCCEE
Confidence            369999999999887642   3344455432 221111  00000 000000  000 1112345666778888889999


Q ss_pred             EEeCCCCccc
Q 046006           81 LLDDKWERVD   90 (180)
Q Consensus        81 VlDdv~~~~~   90 (180)
                      ++|++.+.+.
T Consensus       200 ~vgEird~~~  209 (343)
T TIGR01420       200 LIGEMRDLET  209 (343)
T ss_pred             EEeCCCCHHH
Confidence            9999987643

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=93.26  E-value=0.18  Score=36.25  Aligned_cols=17  Identities=35%  Similarity=0.726  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +.|+||||+++.+.+.+
T Consensus         8 ~~GsGKtT~~~~L~~~l   24 (200)
T cd01672           8 IDGAGKTTLIELLAERL   24 (200)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            46999999999999886

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=93.23  E-value=0.096  Score=40.03  Aligned_cols=17  Identities=35%  Similarity=0.749  Sum_probs=14.8

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++..+.
T Consensus        11 GGVGKTT~~~nLA~~la   27 (270)
T PRK13185         11 GGIGKSTTSSNLSAAFA   27 (270)
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            89999999999888764

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=93.23  E-value=0.12  Score=42.32  Aligned_cols=17  Identities=29%  Similarity=0.386  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||++|+.++...
T Consensus        55 ppG~GKT~lAraLA~~l   71 (441)
T TIGR00390        55 PTGVGKTEIARRLAKLA   71 (441)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999998885

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=93.21  E-value=0.25  Score=38.41  Aligned_cols=80  Identities=16%  Similarity=0.093  Sum_probs=39.1

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC----CCCCCCcChHHHHHHHHHHhCCC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLD----GDSWKNKNSEEKALEIFRFLSKK   76 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~k   76 (180)
                      .+|+|||||...+.+.+.   .... ...+. ....+..+  ...++..+.+-    ....--.+.......+.......
T Consensus       112 ~pGsGKTTLl~~l~~~l~---~~~~-~~VI~-gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~~L~~~~  184 (290)
T PRK10463        112 SPGSGKTTLLTETLMRLK---DSVP-CAVIE-GDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIADAAPRLPLDD  184 (290)
T ss_pred             CCCCCHHHHHHHHHHHhc---cCCC-EEEEC-CCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHHHHHHHhhcC
Confidence            379999999999998853   2222 22222 11112222  22234443320    10001122333344444443444


Q ss_pred             cEEEEEeCCCC
Q 046006           77 KFVLLLDDKWE   87 (180)
Q Consensus        77 ~~LlVlDdv~~   87 (180)
                      .-+++++++-.
T Consensus       185 ~d~liIEnvGn  195 (290)
T PRK10463        185 NGILFIENVGN  195 (290)
T ss_pred             CcEEEEECCCC
Confidence            56888999875

>smart00763 AAA_PrkA PrkA AAA domain

Probab=93.18  E-value=0.062  Score=42.92  Aligned_cols=18  Identities=22%  Similarity=0.313  Sum_probs=16.1

Q ss_pred             CCCCcHHHHHHHHHcccc
Q 046006            1 MGGVGKTTLLTHINNKFL   18 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~   18 (180)
                      ++|+||||||..+++.+.
T Consensus        86 PPGsGKStla~~La~~l~  103 (361)
T smart00763       86 PVGGGKSSLVECLKRGLE  103 (361)
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            589999999999998874

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK07667 uridine kinase; Provisional

Probab=93.17  E-value=0.059  Score=39.20  Aligned_cols=17  Identities=24%  Similarity=0.560  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+||||+|..+...+
T Consensus        25 ~~gsGKStla~~L~~~l   41 (193)
T PRK07667         25 LSRSGKTTFVANLKENM   41 (193)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            47999999999998875

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=93.16  E-value=0.058  Score=36.40  Aligned_cols=15  Identities=33%  Similarity=0.625  Sum_probs=13.8

Q ss_pred             CCcHHHHHHHHHccc
Q 046006            3 GVGKTTLLTHINNKF   17 (180)
Q Consensus         3 GiGKTtLA~~~~~~~   17 (180)
                      |.||||+++.++..+
T Consensus        25 GaGKTtf~r~l~~~l   39 (123)
T PF02367_consen   25 GAGKTTFVRGLARAL   39 (123)
T ss_dssp             TSSHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHc
Confidence            899999999998875

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=93.12  E-value=0.059  Score=39.46  Aligned_cols=17  Identities=35%  Similarity=0.462  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.++..+
T Consensus        11 ~~G~GKst~a~~l~~~~   27 (197)
T PRK12339         11 IPGVGKTSISGYIARHR   27 (197)
T ss_pred             CCCCCHHHHHHHHHHhc
Confidence            48999999999999884

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=93.10  E-value=0.15  Score=38.42  Aligned_cols=37  Identities=22%  Similarity=0.295  Sum_probs=22.0

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQL   38 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~   38 (180)
                      |||+||||-+..+++.+- -...=+++.=++.|....+
T Consensus        56 pPG~GKTTsi~~LAr~LL-G~~~ke~vLELNASdeRGI   92 (333)
T KOG0991|consen   56 PPGTGKTTSILCLARELL-GDSYKEAVLELNASDERGI   92 (333)
T ss_pred             CCCCchhhHHHHHHHHHh-ChhhhhHhhhccCcccccc
Confidence            699999998777777641 1122245555555544433

>cd00046 DEXDc DEAD-like helicases superfamily

Probab=93.09  E-value=0.21  Score=33.05  Aligned_cols=30  Identities=23%  Similarity=0.082  Sum_probs=20.1

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIV   31 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~   31 (180)
                      ..|+|||+.+..+..+.. .......+++++
T Consensus         8 ~~G~GKT~~~~~~~~~~~-~~~~~~~~lv~~   37 (144)
T cd00046           8 PTGSGKTLAALLPILELL-DSLKGGQVLVLA   37 (144)
T ss_pred             CCCCchhHHHHHHHHHHH-hcccCCCEEEEc
Confidence            379999999988877742 222345566664

A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=93.05  E-value=0.065  Score=37.30  Aligned_cols=17  Identities=29%  Similarity=0.647  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+||||||+.+...+
T Consensus         7 ~~GsGKSTla~~L~~~l   23 (149)
T cd02027           7 LSGSGKSTIARALEEKL   23 (149)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            47999999999998875

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=93.04  E-value=0.54  Score=39.27  Aligned_cols=51  Identities=22%  Similarity=0.255  Sum_probs=28.8

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLL   52 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~   52 (180)
                      +.|+||||++..++..+. .+..-..+..+.... .....+-+....+.++.+
T Consensus       264 pnGvGKTTTiaKLA~~~~-~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp  315 (484)
T PRK06995        264 PTGVGKTTTTAKLAARCV-MRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP  315 (484)
T ss_pred             CCCccHHHHHHHHHHHHH-HhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCC
Confidence            369999999999997742 112112344554332 223444455556666544

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=93.03  E-value=0.067  Score=38.60  Aligned_cols=17  Identities=29%  Similarity=0.497  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||||++.++...
T Consensus        10 ~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078         10 PSGSGKDSLLAALRQRE   26 (186)
T ss_pred             CCCCCHHHHHHHHhccC
Confidence            57999999999998774

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=93.00  E-value=0.057  Score=38.23  Aligned_cols=17  Identities=29%  Similarity=0.403  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+.+.+
T Consensus        10 ~~GsGKst~~~~la~~l   26 (171)
T PRK03731         10 ARGCGKTTVGMALAQAL   26 (171)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999999875

>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein

Probab=92.97  E-value=0.059  Score=41.17  Aligned_cols=17  Identities=35%  Similarity=0.712  Sum_probs=14.2

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++..+.
T Consensus         9 GGVGKTT~~~nLA~~La   25 (268)
T TIGR01281         9 GGIGKSTTSSNLSVAFA   25 (268)
T ss_pred             CcCcHHHHHHHHHHHHH
Confidence            89999999888777653

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=92.95  E-value=0.058  Score=39.74  Aligned_cols=17  Identities=35%  Similarity=0.556  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      |=|+||||||+.+.+++
T Consensus        12 ~IG~GKSTLa~~La~~l   28 (216)
T COG1428          12 MIGAGKSTLAQALAEHL   28 (216)
T ss_pred             ccccCHHHHHHHHHHHh
Confidence            44999999999999986

>COG1158 Rho Transcription termination factor [Transcription]

Probab=92.93  E-value=0.41  Score=37.93  Aligned_cols=84  Identities=21%  Similarity=0.258  Sum_probs=51.2

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEE-eCCCC-CHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHH----Hh-
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIV-VSKDL-QLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFR----FL-   73 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~-~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~----~L-   73 (180)
                      +|-.|||+|.+.+++..  ..+|.++..||- +.+.+ .+.++.+.+-...-.+ .-+.++...-+.++.+.+    .. 
T Consensus       181 PPkaGKT~lLq~IA~aI--t~N~Pe~~LiVLLIDERPEEVTdmqrsV~geViaS-TFDepp~~HvqVAE~viEkAKRlVE  257 (422)
T COG1158         181 PPKAGKTTLLQNIANAI--TTNHPECELIVLLIDERPEEVTDMQRSVKGEVVAS-TFDEPPSRHVQVAEMVIEKAKRLVE  257 (422)
T ss_pred             CCCCCchHHHHHHHHHH--hcCCCceEEEEEEecCCchHHHHHHHhhcceEEee-cCCCcchhhHHHHHHHHHHHHHHHH
Confidence            46789999999999985  568899999986 34433 5666766665333222 212222222233333333    33 


Q ss_pred             CCCcEEEEEeCCCC
Q 046006           74 SKKKFVLLLDDKWE   87 (180)
Q Consensus        74 ~~k~~LlVlDdv~~   87 (180)
                      .++.+.+.||-+-.
T Consensus       258 ~~kDVVILLDSITR  271 (422)
T COG1158         258 HGKDVVILLDSITR  271 (422)
T ss_pred             cCCcEEEEehhHHH
Confidence            36778888888643

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=92.93  E-value=0.064  Score=38.59  Aligned_cols=17  Identities=35%  Similarity=0.606  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+||||||..+...+
T Consensus         7 ~sgsGKttla~~l~~~l   23 (179)
T cd02028           7 PSGSGKTTFAKKLSNQL   23 (179)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            37999999999999875

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK14529 adenylate kinase; Provisional

Probab=92.92  E-value=0.39  Score=35.89  Aligned_cols=17  Identities=29%  Similarity=0.403  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.++..+
T Consensus         8 ~PGsGK~T~a~~La~~~   24 (223)
T PRK14529          8 PNGSGKGTQGALVKKKY   24 (223)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            58999999999998875

>PRK06761 hypothetical protein; Provisional

Probab=92.92  E-value=0.1  Score=40.34  Aligned_cols=28  Identities=18%  Similarity=0.440  Sum_probs=19.9

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWI   30 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv   30 (180)
                      ++|+||||+++.+++.+.  ...++...+.
T Consensus        11 ~~GsGKTTla~~L~~~L~--~~g~~v~~~~   38 (282)
T PRK06761         11 LPGFGKSTTAKMLNDILS--QNGIEVELYL   38 (282)
T ss_pred             CCCCCHHHHHHHHHHhcC--cCceEEEEEe
Confidence            489999999999999863  2344444433

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=92.87  E-value=0.26  Score=43.44  Aligned_cols=17  Identities=29%  Similarity=0.520  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||.||+.++..+
T Consensus       496 P~GvGKT~lAk~LA~~l  512 (758)
T PRK11034        496 PTGVGKTEVTVQLSKAL  512 (758)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999998875

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=92.87  E-value=0.21  Score=43.30  Aligned_cols=17  Identities=35%  Similarity=0.368  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||++|+.++...
T Consensus       193 ~~G~GKt~~~~~~a~~~  209 (644)
T PRK10733        193 PPGTGKTLLAKAIAGEA  209 (644)
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            48999999999998874

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=92.85  E-value=0.064  Score=38.29  Aligned_cols=13  Identities=46%  Similarity=0.636  Sum_probs=12.3

Q ss_pred             CCCcHHHHHHHHH
Q 046006            2 GGVGKTTLLTHIN   14 (180)
Q Consensus         2 gGiGKTtLA~~~~   14 (180)
                      ||+||||+|..+.
T Consensus         9 PGvGKTT~~~~L~   21 (180)
T COG1936           9 PGVGKTTVCKLLR   21 (180)
T ss_pred             CCCchHHHHHHHH
Confidence            8999999999997

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=92.85  E-value=0.066  Score=38.23  Aligned_cols=17  Identities=24%  Similarity=0.407  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        12 ~~GaGKStl~~~La~~l   28 (172)
T PRK05057         12 PMGAGKSTIGRQLAQQL   28 (172)
T ss_pred             CCCcCHHHHHHHHHHHc
Confidence            57999999999999874

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=92.83  E-value=0.5  Score=38.76  Aligned_cols=17  Identities=24%  Similarity=0.509  Sum_probs=15.8

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +||+|||++..++++.+
T Consensus       243 PPGTGKSS~IaAmAn~L  259 (457)
T KOG0743|consen  243 PPGTGKSSFIAAMANYL  259 (457)
T ss_pred             CCCCCHHHHHHHHHhhc
Confidence            69999999999999986

>PRK05748 replicative DNA helicase; Provisional

Probab=92.81  E-value=0.57  Score=38.71  Aligned_cols=44  Identities=23%  Similarity=0.194  Sum_probs=28.1

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKV   49 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l   49 (180)
                      ||+|||++|..++.+.. .+.. ..++++  |-.-+..++...++...
T Consensus       212 pg~GKT~~al~ia~~~a-~~~g-~~v~~f--SlEms~~~l~~R~l~~~  255 (448)
T PRK05748        212 PSVGKTAFALNIAQNVA-TKTD-KNVAIF--SLEMGAESLVMRMLCAE  255 (448)
T ss_pred             CCCCchHHHHHHHHHHH-HhCC-CeEEEE--eCCCCHHHHHHHHHHHh
Confidence            79999999999987742 2222 244454  33446667777776544

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=92.81  E-value=0.058  Score=37.87  Aligned_cols=17  Identities=24%  Similarity=0.298  Sum_probs=15.3

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      +|+||||+++.++..+.
T Consensus         1 ~GsGKStvg~~lA~~L~   17 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLG   17 (158)
T ss_dssp             TTSSHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHhC
Confidence            69999999999999863

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>TIGR03263 guanyl_kin guanylate kinase

Probab=92.79  E-value=0.077  Score=37.83  Aligned_cols=17  Identities=35%  Similarity=0.477  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||||+.++...
T Consensus         9 ~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         9 PSGVGKSTLVKALLEED   25 (180)
T ss_pred             CCCCCHHHHHHHHHccC
Confidence            47999999999999864

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK10037 cell division protein; Provisional

Probab=92.79  E-value=0.11  Score=39.36  Aligned_cols=17  Identities=29%  Similarity=0.550  Sum_probs=15.0

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++..+.
T Consensus        11 GGvGKTT~a~nLA~~La   27 (250)
T PRK10037         11 GGVGTTSITAALAWSLQ   27 (250)
T ss_pred             CCccHHHHHHHHHHHHH
Confidence            89999999999988764

>PRK04182 cytidylate kinase; Provisional

Probab=92.79  E-value=0.071  Score=37.85  Aligned_cols=17  Identities=35%  Similarity=0.462  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.++..+
T Consensus         8 ~~GsGKstia~~la~~l   24 (180)
T PRK04182          8 PPGSGKTTVARLLAEKL   24 (180)
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            47999999999999875

>PRK13230 nitrogenase reductase-like protein; Reviewed

Probab=92.76  E-value=0.091  Score=40.43  Aligned_cols=17  Identities=35%  Similarity=0.688  Sum_probs=14.9

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++.-+.
T Consensus        10 GGVGKTT~a~nLA~~La   26 (279)
T PRK13230         10 GGIGKSTTVCNIAAALA   26 (279)
T ss_pred             CCCcHHHHHHHHHHHHH
Confidence            89999999999887764

>PRK14531 adenylate kinase; Provisional

Probab=92.75  E-value=0.065  Score=38.58  Aligned_cols=17  Identities=24%  Similarity=0.247  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +||+||||+|+.++..+
T Consensus        10 ~pGsGKsT~~~~la~~~   26 (183)
T PRK14531         10 PPGAGKGTQAARLCAAH   26 (183)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999998874

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=92.72  E-value=0.58  Score=36.03  Aligned_cols=26  Identities=23%  Similarity=0.174  Sum_probs=19.5

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWI   30 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv   30 (180)
                      .+|+|||||.+.++...    ....+.+++
T Consensus       119 ~~g~GKttl~~~l~~~~----~~~~G~i~~  144 (270)
T TIGR02858       119 PPQCGKTTLLRDLARIL----STGISQLGL  144 (270)
T ss_pred             CCCCCHHHHHHHHhCcc----CCCCceEEE
Confidence            37999999999999885    344455555

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PRK13948 shikimate kinase; Provisional

Probab=92.72  E-value=0.072  Score=38.52  Aligned_cols=17  Identities=18%  Similarity=0.329  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      |.|+||||+++.+...+
T Consensus        18 ~~GsGKSTvg~~La~~l   34 (182)
T PRK13948         18 FMGTGKSRIGWELSRAL   34 (182)
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            68999999999999875

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=92.72  E-value=0.077  Score=33.16  Aligned_cols=17  Identities=47%  Similarity=0.757  Sum_probs=15.2

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      +|+||||++..++..+.
T Consensus         8 ~G~Gktt~~~~l~~~l~   24 (99)
T cd01983           8 GGVGKTTLAANLAAALA   24 (99)
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            69999999999998864

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=92.71  E-value=0.13  Score=44.31  Aligned_cols=47  Identities=13%  Similarity=0.104  Sum_probs=34.4

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVG   50 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~   50 (180)
                      .+|+||||+|+.+.+.+.  ..+++..+|..- ...+...+++.++..++
T Consensus        58 ~~G~GKttla~~l~~~l~--~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G  104 (637)
T PRK13765         58 SPGTGKSMLAKAMAELLP--KEELQDILVYPN-PEDPNNPKIRTVPAGKG  104 (637)
T ss_pred             CCCCcHHHHHHHHHHHcC--hHhHHHheEeeC-CCcchHHHHHHHHHhcC
Confidence            379999999999998753  234577778654 44577777777776665

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=92.71  E-value=0.11  Score=38.09  Aligned_cols=47  Identities=32%  Similarity=0.356  Sum_probs=28.5

Q ss_pred             CCCCcHHHHHHHHHccccc----ccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLV----SSTDFDCVIWIVVSKDLQLEKIQEIVGK   47 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~----~~~~f~~~~wv~~~~~~~~~~~~~~i~~   47 (180)
                      +||+|||+++..+....-.    ....-+..+-++..++.....++..+.+
T Consensus        25 pPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~   75 (236)
T PF13086_consen   25 PPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK   75 (236)
T ss_dssp             STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred             CCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence            5899999877776666310    1133455566666666666667666666

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=92.69  E-value=0.24  Score=35.73  Aligned_cols=17  Identities=29%  Similarity=0.475  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+||||+|+.+...+
T Consensus        11 ~~GsGKsT~~~~L~~~l   27 (195)
T TIGR00041        11 IDGAGKTTQANLLKKLL   27 (195)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            37999999999999886

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK13233 nifH nitrogenase reductase; Reviewed

Probab=92.66  E-value=0.067  Score=41.03  Aligned_cols=17  Identities=29%  Similarity=0.540  Sum_probs=14.5

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++.-+.
T Consensus        11 GGVGKTT~a~nLA~~La   27 (275)
T PRK13233         11 GGIGKSTTTQNTAAAMA   27 (275)
T ss_pred             CCCcHHHHHHHHHHHHH
Confidence            89999999998877753

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=92.66  E-value=0.075  Score=37.92  Aligned_cols=16  Identities=38%  Similarity=0.634  Sum_probs=14.2

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      ||+||||+|..++..+
T Consensus         9 gG~GKSt~a~nLA~~l   24 (179)
T cd03110           9 GGTGKTTVTAALAALL   24 (179)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            8999999999987764

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=92.65  E-value=0.39  Score=36.96  Aligned_cols=72  Identities=7%  Similarity=-0.073  Sum_probs=38.5

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC--CHHHHHHHHHHH----hCCCCCCCCCCcChHHHHHHHHHHhCC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL--QLEKIQEIVGKK----VGLLDGDSWKNKNSEEKALEIFRFLSK   75 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~----l~~~~~~~~~~~~~~~~~~~l~~~L~~   75 (180)
                      +|+||||+|+.+.+.+.. .+  .....++...-+  +-...-..+...    ...+ .-.+...+.+.+.+.++...++
T Consensus         8 SGSGKTTv~~~l~~~l~~-~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfd-Hf~PeAnd~dlL~~~l~~L~~g   83 (277)
T cd02029           8 SGAGTTTVKRAFEHIFAR-EG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFS-HFGPEANLFDLLEELFRTYGET   83 (277)
T ss_pred             CCCCHHHHHHHHHHHHHh-cC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCC-CCCcccccHHHHHHHHHHHHcC
Confidence            699999999999877531 11  123445433322  222222222222    1222 1124566777777777777765


Q ss_pred             Cc
Q 046006           76 KK   77 (180)
Q Consensus        76 k~   77 (180)
                      +.
T Consensus        84 ~~   85 (277)
T cd02029          84 GR   85 (277)
T ss_pred             CC
Confidence            53

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR01969 minD_arch cell division ATPase MinD, archaeal

Probab=92.65  E-value=0.072  Score=40.02  Aligned_cols=16  Identities=38%  Similarity=0.706  Sum_probs=14.2

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      ||+||||+|..++..+
T Consensus        10 GGvGKTt~a~~LA~~l   25 (251)
T TIGR01969        10 GGTGKTTITANLGVAL   25 (251)
T ss_pred             CCCcHHHHHHHHHHHH
Confidence            8999999999888765

This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=92.65  E-value=0.29  Score=43.80  Aligned_cols=17  Identities=29%  Similarity=0.575  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||+||+.++...
T Consensus       207 ~pGvGKT~l~~~la~~i  223 (857)
T PRK10865        207 EPGVGKTAIVEGLAQRI  223 (857)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            48999999999999875

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=92.63  E-value=0.067  Score=39.48  Aligned_cols=17  Identities=29%  Similarity=0.518  Sum_probs=14.8

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .||+||||+|++++.-+
T Consensus         9 yPgsGKTtfakeLak~L   25 (261)
T COG4088           9 YPGSGKTTFAKELAKEL   25 (261)
T ss_pred             CCCCCchHHHHHHHHHH
Confidence            48999999999998765

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=92.62  E-value=0.26  Score=42.35  Aligned_cols=47  Identities=15%  Similarity=0.106  Sum_probs=29.0

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVG   50 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~   50 (180)
                      ++|+|||++|+.+.+.+.  ...|...+++. ....+...+++.++..++
T Consensus        45 ~pG~GKT~la~~la~~l~--~~~~~~~~~~~-n~~~~~~~~~~~v~~~~g   91 (608)
T TIGR00764        45 EPGVGKSMLAKAMAELLP--DEELEDILVYP-NPEDPNMPRIVEVPAGEG   91 (608)
T ss_pred             CCCCCHHHHHHHHHHHcC--chhheeEEEEe-CCCCCchHHHHHHHHhhc
Confidence            479999999999998863  22333333332 222345555777766665

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>TIGR01287 nifH nitrogenase iron protein

Probab=92.55  E-value=0.1  Score=39.98  Aligned_cols=17  Identities=35%  Similarity=0.638  Sum_probs=14.9

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++..+.
T Consensus         9 GGVGKTT~a~nLA~~La   25 (275)
T TIGR01287         9 GGIGKSTTTQNIAAALA   25 (275)
T ss_pred             CcCcHHHHHHHHHHHHH
Confidence            89999999999887764

This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=92.54  E-value=0.064  Score=37.72  Aligned_cols=15  Identities=33%  Similarity=0.543  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||++.+...
T Consensus         8 ~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    8 PSTGKTTLIEALAAR   22 (163)
T ss_dssp             TTSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHc
Confidence            589999999999865

>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins

Probab=92.51  E-value=0.36  Score=39.17  Aligned_cols=22  Identities=27%  Similarity=0.285  Sum_probs=18.2

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFD   25 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~   25 (180)
                      +||.|||++|..+.+.++   ++.+
T Consensus        18 ~PGTGKTtfaLelL~~l~---~~~~   39 (484)
T PF07088_consen   18 EPGTGKTTFALELLNSLK---DHGN   39 (484)
T ss_pred             CCCCCceeeehhhHHHHh---ccCC
Confidence            689999999999999864   5554

GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=92.49  E-value=0.091  Score=34.53  Aligned_cols=16  Identities=38%  Similarity=0.580  Sum_probs=14.3

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      +|+|||||.+.++...
T Consensus         8 ~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    8 SGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             TTSSHHHHHHHHHHSS
T ss_pred             CCCCHHHHHHHHhcCC
Confidence            6999999999999874

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK15453 phosphoribulokinase; Provisional

Probab=92.47  E-value=0.72  Score=35.80  Aligned_cols=69  Identities=9%  Similarity=-0.005  Sum_probs=36.8

Q ss_pred             CCCcHHHHHHHHHcccccccCCCC-eEEEEEeCCCC--CHHHHHHHHH--HHh--CCCCCCCCCCcChHHHHHHHHHHhC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFD-CVIWIVVSKDL--QLEKIQEIVG--KKV--GLLDGDSWKNKNSEEKALEIFRFLS   74 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~-~~~wv~~~~~~--~~~~~~~~i~--~~l--~~~~~~~~~~~~~~~~~~~l~~~L~   74 (180)
                      +|+||||+|+.+.+.+.    +.. ....++...-+  +..++-..+.  +.-  +.+ .-.+...+.+.+.+.++...+
T Consensus        14 SGsGKTTva~~l~~if~----~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfd-hf~PdAnd~dlL~~~l~~l~~   88 (290)
T PRK15453         14 SGAGTTTVKRAFEKIFR----RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFS-HFGPEANLFDELEQLFREYGE   88 (290)
T ss_pred             CCCCHHHHHHHHHHHHh----hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCC-CCCCCcccHHHHHHHHHHHhc
Confidence            79999999999987652    111 24445543322  3333322221  111  122 112456677777777777655


Q ss_pred             C
Q 046006           75 K   75 (180)
Q Consensus        75 ~   75 (180)
                      +
T Consensus        89 ~   89 (290)
T PRK15453         89 T   89 (290)
T ss_pred             C
Confidence            3

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=92.46  E-value=0.66  Score=32.80  Aligned_cols=15  Identities=33%  Similarity=0.384  Sum_probs=13.5

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|.||||+|...+-+
T Consensus        11 ~G~Gkt~~a~g~~~r   25 (159)
T cd00561          11 NGKGKTTAALGLALR   25 (159)
T ss_pred             CCCCHHHHHHHHHHH
Confidence            699999999998877

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=92.45  E-value=0.081  Score=36.24  Aligned_cols=16  Identities=38%  Similarity=0.478  Sum_probs=14.6

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      .|+||||+++.++..+
T Consensus        31 lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        31 LGAGKTTLVQGLLQGL   46 (133)
T ss_pred             CCCCHHHHHHHHHHHc
Confidence            5999999999999886

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=92.45  E-value=2.2  Score=35.38  Aligned_cols=39  Identities=10%  Similarity=0.075  Sum_probs=29.3

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChH-HHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPL-ALITI  143 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PL-al~~~  143 (180)
                      ..++++++++++..+.+.+.           .+..|++.++|.+- |+..+
T Consensus       173 ~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~L  223 (451)
T PRK06305        173 QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLY  223 (451)
T ss_pred             eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            46889999999988877764           57789999999664 44333

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=92.42  E-value=0.71  Score=36.44  Aligned_cols=17  Identities=41%  Similarity=0.780  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||++..++..+
T Consensus       122 pnGsGKTTt~~kLA~~l  138 (318)
T PRK10416        122 VNGVGKTTTIGKLAHKY  138 (318)
T ss_pred             CCCCcHHHHHHHHHHHH
Confidence            47999999999998885

>PRK03846 adenylylsulfate kinase; Provisional

Probab=92.40  E-value=0.087  Score=38.43  Aligned_cols=17  Identities=24%  Similarity=0.540  Sum_probs=14.8

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||||+.+...+
T Consensus        32 ~~GsGKSTla~~l~~~l   48 (198)
T PRK03846         32 LSGSGKSTVAGALEEAL   48 (198)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            46999999999998874

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function

Probab=92.39  E-value=0.33  Score=38.72  Aligned_cols=33  Identities=21%  Similarity=0.336  Sum_probs=23.1

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK   34 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~   34 (180)
                      .+|+|||.||..++.++ ..........+++...
T Consensus         9 ~aGTGKTvla~~l~~~l-~~~~~~~~~~~l~~n~   41 (352)
T PF09848_consen    9 GAGTGKTVLALNLAKEL-QNSEEGKKVLYLCGNH   41 (352)
T ss_pred             cCCcCHHHHHHHHHHHh-hccccCCceEEEEecc
Confidence            38999999999999986 1124445566666554

It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].

>PRK13235 nifH nitrogenase reductase; Reviewed

Probab=92.38  E-value=0.078  Score=40.69  Aligned_cols=17  Identities=29%  Similarity=0.497  Sum_probs=14.7

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++.-+.
T Consensus        10 GGVGKTT~~~nLA~~La   26 (274)
T PRK13235         10 GGIGKSTTTQNTVAGLA   26 (274)
T ss_pred             CCccHHHHHHHHHHHHH
Confidence            89999999999887763

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=92.37  E-value=2  Score=36.88  Aligned_cols=39  Identities=23%  Similarity=0.169  Sum_probs=27.8

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCCh-HHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLP-LALITI  143 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~P-Lal~~~  143 (180)
                      ..+++.+++.++....+...           ....|++.++|.. .|+..+
T Consensus       171 ~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~L  221 (576)
T PRK14965        171 QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTL  221 (576)
T ss_pred             hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            46778889888888777653           6778888888865 444444

>PRK07165 F0F1 ATP synthase subunit alpha; Validated

Probab=92.34  E-value=0.66  Score=38.85  Aligned_cols=82  Identities=20%  Similarity=0.280  Sum_probs=43.4

Q ss_pred             CCCcHHHHHH-HHHcccccccCCCCe-EEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChHH-----HHHHHH
Q 046006            2 GGVGKTTLLT-HINNKFLVSSTDFDC-VIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSEE-----KALEIF   70 (180)
Q Consensus         2 gGiGKTtLA~-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~-----~~~~l~   70 (180)
                      .|+|||+||. .+.++ .    .-+. ++++-+++.. ...++.+.+.+.=.....   .........+     ....+.
T Consensus       152 ~gtGKT~lal~~I~~q-~----~~dv~~V~~~IGer~~ev~~~~~~l~~~gal~~tvvV~atsd~~~~r~~ap~~a~tiA  226 (507)
T PRK07165        152 RQTGKTHIALNTIINQ-K----NTNVKCIYVAIGQKRENLSRIYETLKEHDALKNTIIIDAPSTSPYEQYLAPYVAMAHA  226 (507)
T ss_pred             CCCCccHHHHHHHHHh-c----CCCeEEEEEEccCChHHHHHHHHHhhhcCceeeeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence            6999999964 46665 2    2244 4777888765 455555555543211100   0011111111     122334


Q ss_pred             HHhC-CCcEEEEEeCCCCc
Q 046006           71 RFLS-KKKFVLLLDDKWER   88 (180)
Q Consensus        71 ~~L~-~k~~LlVlDdv~~~   88 (180)
                      ++++ .+.+|+|+||+-..
T Consensus       227 Eyfrd~~dVLlv~DdLTr~  245 (507)
T PRK07165        227 ENISYNDDVLIVFDDLTKH  245 (507)
T ss_pred             HHHHhcCceEEEEcChHHH
Confidence            4442 28999999998653

>TIGR00708 cobA cob(I)alamin adenosyltransferase

Probab=92.27  E-value=0.36  Score=34.58  Aligned_cols=15  Identities=33%  Similarity=0.357  Sum_probs=13.5

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      .|.||||.|..++.+
T Consensus        14 ~GkGKtt~a~g~a~r   28 (173)
T TIGR00708        14 NGKGKTTAAFGMALR   28 (173)
T ss_pred             CCCChHHHHHHHHHH
Confidence            599999999998877

Alternate name: corrinoid adenosyltransferase.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=92.25  E-value=0.2  Score=37.62  Aligned_cols=16  Identities=44%  Similarity=0.771  Sum_probs=13.7

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      ||+||||+|..++..+
T Consensus         9 GG~GKTtiaalll~~l   24 (255)
T COG3640           9 GGVGKTTIAALLLKRL   24 (255)
T ss_pred             CCccHHHHHHHHHHHH
Confidence            8999999999966664

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=92.25  E-value=0.18  Score=37.73  Aligned_cols=17  Identities=47%  Similarity=0.761  Sum_probs=15.2

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++..+.
T Consensus        11 GGvGKTt~a~nla~~la   27 (246)
T TIGR03371        11 GGVGKTTLTANLASALK   27 (246)
T ss_pred             CCccHHHHHHHHHHHHH
Confidence            89999999999988764

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>PRK02496 adk adenylate kinase; Provisional

Probab=92.23  E-value=0.086  Score=37.86  Aligned_cols=17  Identities=24%  Similarity=0.298  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus         9 ~pGsGKst~a~~la~~~   25 (184)
T PRK02496          9 PPGAGKGTQAVVLAEHL   25 (184)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            48999999999998764

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=92.22  E-value=0.15  Score=38.97  Aligned_cols=17  Identities=29%  Similarity=0.614  Sum_probs=14.6

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++..+.
T Consensus         9 GGvGKTT~a~nLA~~la   25 (267)
T cd02032           9 GGIGKSTTSSNLSVALA   25 (267)
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            89999999998887763

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>PRK13232 nifH nitrogenase reductase; Reviewed

Probab=92.17  E-value=0.089  Score=40.34  Aligned_cols=17  Identities=29%  Similarity=0.612  Sum_probs=14.7

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++.-+.
T Consensus        10 GGVGKTT~a~nLA~~La   26 (273)
T PRK13232         10 GGIGKSTTTQNLTAALS   26 (273)
T ss_pred             CCCcHHHHHHHHHHHHH
Confidence            89999999999887763

>PLN02200 adenylate kinase family protein

Probab=92.15  E-value=0.089  Score=39.60  Aligned_cols=17  Identities=35%  Similarity=0.372  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +||+||||+|+.++..+
T Consensus        51 ~PGSGKsT~a~~La~~~   67 (234)
T PLN02200         51 GPGSGKGTQCEKIVETF   67 (234)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999998774

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=92.09  E-value=0.11  Score=35.66  Aligned_cols=17  Identities=47%  Similarity=0.772  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||||++.+...+
T Consensus         7 psGsGKstl~~~L~~~~   23 (137)
T cd00071           7 PSGVGKSTLLKRLLEEF   23 (137)
T ss_pred             CCCCCHHHHHHHHHhcC
Confidence            47999999999998874

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=92.06  E-value=0.11  Score=37.15  Aligned_cols=18  Identities=22%  Similarity=0.333  Sum_probs=15.8

Q ss_pred             CCCCcHHHHHHHHHcccc
Q 046006            1 MGGVGKTTLLTHINNKFL   18 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~   18 (180)
                      |.|+||||+.++++..+.
T Consensus        10 ~mGaGKSTIGr~LAk~L~   27 (172)
T COG0703          10 FMGAGKSTIGRALAKALN   27 (172)
T ss_pred             CCCCCHhHHHHHHHHHcC
Confidence            679999999999998863

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=92.04  E-value=0.1  Score=37.68  Aligned_cols=16  Identities=38%  Similarity=0.586  Sum_probs=14.8

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      ++|+|||||++.++.+
T Consensus        12 PSG~GKsTl~k~L~~~   27 (191)
T COG0194          12 PSGVGKSTLVKALLED   27 (191)
T ss_pred             CCCCCHHHHHHHHHhh
Confidence            5899999999999988

>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=92.03  E-value=0.5  Score=38.50  Aligned_cols=44  Identities=18%  Similarity=0.178  Sum_probs=29.5

Q ss_pred             CcEEEEEeCCCCcccccc--------cc---------------ccccc-ccccceEeecCCChhhhHH
Q 046006           76 KKFVLLLDDKWERVDLNK--------GL---------------FVCGL-VEANKNFKVECLSDNDAWE  119 (180)
Q Consensus        76 k~~LlVlDdv~~~~~l~~--------g~---------------~~~~~-~~~~~~~~l~~L~~~~a~~  119 (180)
                      ++.+++||.|.....|..        |.               ..+.. .+-...+++-||+..|-..
T Consensus        94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~  161 (398)
T COG1373          94 EKSYIFLDEIQNVPDWERALKYLYDRGNLDVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK  161 (398)
T ss_pred             CCceEEEecccCchhHHHHHHHHHccccceEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence            778999999999887665        11               11111 1223578899999988865

>PRK10646 ADP-binding protein; Provisional

Probab=92.03  E-value=0.095  Score=36.76  Aligned_cols=15  Identities=33%  Similarity=0.448  Sum_probs=13.9

Q ss_pred             CCcHHHHHHHHHccc
Q 046006            3 GVGKTTLLTHINNKF   17 (180)
Q Consensus         3 GiGKTtLA~~~~~~~   17 (180)
                      |.||||+++.++..+
T Consensus        38 GaGKTtf~rgl~~~L   52 (153)
T PRK10646         38 GAGKTTFSRGFLQAL   52 (153)
T ss_pred             CCCHHHHHHHHHHHc
Confidence            899999999998876

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=91.97  E-value=0.44  Score=42.22  Aligned_cols=22  Identities=5%  Similarity=0.317  Sum_probs=17.4

Q ss_pred             ceEeecCCChhhhHHHHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQKLA  126 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~~~  126 (180)
                      .++++.+++.++-.++..++..
T Consensus       486 ~ii~~~~~t~eek~~Ia~~~L~  507 (784)
T PRK10787        486 EVIRLSGYTEDEKLNIAKRHLL  507 (784)
T ss_pred             eeeecCCCCHHHHHHHHHHhhh
Confidence            4678899999999888877743

>PRK00300 gmk guanylate kinase; Provisional

Probab=91.96  E-value=0.1  Score=38.03  Aligned_cols=17  Identities=29%  Similarity=0.442  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||||+.++..+
T Consensus        13 ~sGsGKstl~~~l~~~~   29 (205)
T PRK00300         13 PSGAGKSTLVKALLERD   29 (205)
T ss_pred             CCCCCHHHHHHHHHhhC
Confidence            47999999999998874

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins

Probab=91.96  E-value=0.19  Score=40.34  Aligned_cols=18  Identities=28%  Similarity=0.390  Sum_probs=15.6

Q ss_pred             CCCCcHHHHHHHHHcccc
Q 046006            1 MGGVGKTTLLTHINNKFL   18 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~   18 (180)
                      .||+|||+|.+++.+.+.
T Consensus        30 ~~GtGKs~l~~~i~~~~~   47 (364)
T PF05970_consen   30 PAGTGKSFLIKAIIDYLR   47 (364)
T ss_pred             CCCCChhHHHHHHHHHhc
Confidence            489999999999988863

The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=91.92  E-value=0.11  Score=36.64  Aligned_cols=17  Identities=35%  Similarity=0.462  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+.+.+
T Consensus         8 ~~GSGKstia~~la~~l   24 (171)
T TIGR02173         8 PPGSGKTTVAKILAEKL   24 (171)
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            47999999999998874

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]

Probab=91.92  E-value=0.26  Score=38.42  Aligned_cols=17  Identities=35%  Similarity=0.432  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .||.|||-||++++|+-
T Consensus       227 ~PGTGKTLLAKAVANqT  243 (440)
T KOG0726|consen  227 EPGTGKTLLAKAVANQT  243 (440)
T ss_pred             CCCCchhHHHHHHhccc
Confidence            38999999999999983

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=91.91  E-value=0.25  Score=35.43  Aligned_cols=18  Identities=28%  Similarity=0.464  Sum_probs=15.8

Q ss_pred             CCCCcHHHHHHHHHcccc
Q 046006            1 MGGVGKTTLLTHINNKFL   18 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~   18 (180)
                      +-|+||||+++.+++.+.
T Consensus         4 iDGsGKtT~~~~L~~~l~   21 (186)
T PF02223_consen    4 IDGSGKTTQIRLLAEALK   21 (186)
T ss_dssp             STTSSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            369999999999999874

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=91.88  E-value=0.11  Score=37.07  Aligned_cols=33  Identities=27%  Similarity=0.266  Sum_probs=22.3

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD   35 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~   35 (180)
                      ++|+|||.||+.++..+. + +.....+-++++.-
T Consensus        11 psGvGKT~la~~la~~l~-~-~~~~~~~~~d~s~~   43 (171)
T PF07724_consen   11 PSGVGKTELAKALAELLF-V-GSERPLIRIDMSEY   43 (171)
T ss_dssp             STTSSHHHHHHHHHHHHT---SSCCEEEEEEGGGH
T ss_pred             CCCCCHHHHHHHHHHHhc-c-CCccchHHHhhhcc
Confidence            479999999999988852 1 23345555665543

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=91.82  E-value=0.46  Score=42.56  Aligned_cols=17  Identities=29%  Similarity=0.575  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||++|..++.+.
T Consensus       202 ~pGvGKT~l~~~la~~i  218 (852)
T TIGR03346       202 EPGVGKTAIVEGLAQRI  218 (852)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            47999999999998875

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit

Probab=91.81  E-value=1.8  Score=36.88  Aligned_cols=81  Identities=10%  Similarity=0.173  Sum_probs=47.9

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC-------CC-----CCCCcChHHH---
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLD-------GD-----SWKNKNSEEK---   65 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~-----~~~~~~~~~~---   65 (180)
                      .|+|||+|...+.+.     ..-|.++++-+++.- .+.+++.++-+......       ..     ...+.+....   
T Consensus       235 ~G~GKT~l~~~lak~-----s~aDviVyvg~GERG~Em~evle~fp~l~dp~~g~~~~~m~rtvlVa~tsd~p~~~R~~s  309 (591)
T TIGR01042       235 FGCGKTVISQSLSKY-----SNSDAIVYVGCGERGNEMAEVLMDFPELTMEVDGREESIMKRTTLVANTSNMPVAAREAS  309 (591)
T ss_pred             CCcCHHHHHHHHHhc-----cCcCEEEEEEEeechHHHHHHHHHhHhhcccccccccccccceEEEEEcCCCCHHHHHHH
Confidence            599999999998775     456788888877654 45566666533221000       00     1112222211   


Q ss_pred             ---HHHHHHHh--CCCcEEEEEeCCCC
Q 046006           66 ---ALEIFRFL--SKKKFVLLLDDKWE   87 (180)
Q Consensus        66 ---~~~l~~~L--~~k~~LlVlDdv~~   87 (180)
                         .-.+.+++  .++.+||++|+...
T Consensus       310 ~ytg~tiAEYfRD~G~~Vll~~DS~tR  336 (591)
T TIGR01042       310 IYTGITLAEYFRDMGYNVSMMADSTSR  336 (591)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEecChHH
Confidence               22344455  47899999999865

This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.

>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon

Probab=91.73  E-value=0.11  Score=39.29  Aligned_cols=17  Identities=47%  Similarity=0.690  Sum_probs=15.1

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||++..++.-+.
T Consensus        11 GGvG~TTltAnLA~aL~   27 (243)
T PF06564_consen   11 GGVGKTTLTANLAWALA   27 (243)
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            89999999999987764

It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=91.69  E-value=0.21  Score=36.73  Aligned_cols=17  Identities=35%  Similarity=0.378  Sum_probs=14.7

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||.+.++.-.
T Consensus        37 ~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        37 HSGAGKSTFLKLILGIE   53 (216)
T ss_pred             CCCCCHHHHHHHHhCCC
Confidence            36999999999998764

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=91.67  E-value=0.41  Score=36.24  Aligned_cols=16  Identities=31%  Similarity=0.696  Sum_probs=14.5

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      .|+|||+|++.+.+.+
T Consensus        61 rGtGKSSlVkall~~y   76 (249)
T PF05673_consen   61 RGTGKSSLVKALLNEY   76 (249)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            6999999999999886

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=91.66  E-value=0.17  Score=38.72  Aligned_cols=25  Identities=28%  Similarity=0.446  Sum_probs=18.6

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEE
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIW   29 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~w   29 (180)
                      ||+||||+|..++.-+.   ..|..++.
T Consensus        11 GGtGKTTva~~la~~l~---~~~~~~l~   35 (284)
T COG1149          11 GGTGKTTVAANLAVLLG---DKYKLVLA   35 (284)
T ss_pred             CCCChhhHHHHHHHHhc---cccceEEE
Confidence            89999999999877654   55554444

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=91.66  E-value=0.11  Score=39.07  Aligned_cols=47  Identities=19%  Similarity=0.185  Sum_probs=26.5

Q ss_pred             HHHHHHHhCCCC---CCCCCCcChHHHH-HHHHHHhCCCcEEEEEeCCCCc
Q 046006           42 QEIVGKKVGLLD---GDSWKNKNSEEKA-LEIFRFLSKKKFVLLLDDKWER   88 (180)
Q Consensus        42 ~~~i~~~l~~~~---~~~~~~~~~~~~~-~~l~~~L~~k~~LlVlDdv~~~   88 (180)
                      ..+++++++.++   ..-+..-+..+++ -.+.+.|.-++-+||+|+.-+.
T Consensus       121 i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSa  171 (252)
T COG1124         121 IAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSA  171 (252)
T ss_pred             HHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhh
Confidence            345556666542   1111223333333 3466777888889999997554

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=91.65  E-value=0.23  Score=35.71  Aligned_cols=27  Identities=26%  Similarity=0.361  Sum_probs=21.3

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIV   31 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~   31 (180)
                      .+|+|||||.+.+|.++    ..-.+.+||.
T Consensus        45 ~SG~GKStllr~LYaNY----~~d~G~I~v~   71 (235)
T COG4778          45 PSGSGKSTLLRSLYANY----LPDEGQILVR   71 (235)
T ss_pred             CCCCcHHHHHHHHHhcc----CCCCceEEEE
Confidence            47999999999999987    2335778775

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=91.60  E-value=0.13  Score=33.90  Aligned_cols=14  Identities=36%  Similarity=0.506  Sum_probs=12.4

Q ss_pred             CCCCcHHHHHHHHH
Q 046006            1 MGGVGKTTLLTHIN   14 (180)
Q Consensus         1 mgGiGKTtLA~~~~   14 (180)
                      .+|+|||||++.+.
T Consensus        23 pSGsGKSTLl~~l~   36 (107)
T cd00820          23 DSGIGKTELALELI   36 (107)
T ss_pred             CCCCCHHHHHHHhh
Confidence            47999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=91.60  E-value=0.11  Score=38.23  Aligned_cols=17  Identities=29%  Similarity=0.622  Sum_probs=14.5

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||++..++..+.
T Consensus         9 GGvGKTt~~~nLA~~la   25 (212)
T cd02117           9 GGIGKSTTSQNLSAALA   25 (212)
T ss_pred             CcCcHHHHHHHHHHHHH
Confidence            89999999888877763

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=91.55  E-value=0.23  Score=36.36  Aligned_cols=16  Identities=38%  Similarity=0.463  Sum_probs=14.3

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      .|+|||||++.++...
T Consensus        35 nGsGKSTLl~~l~G~~   50 (210)
T cd03269          35 NGAGKTTTIRMILGII   50 (210)
T ss_pred             CCCCHHHHHHHHhCCC
Confidence            6999999999998764

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03453 partition_RepA plasmid partitioning protein RepA

Probab=91.53  E-value=0.22  Score=40.31  Aligned_cols=17  Identities=41%  Similarity=0.647  Sum_probs=14.9

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++..+.
T Consensus       114 GGvGKTT~a~nLA~~La  130 (387)
T TIGR03453       114 GGSGKTTTAAHLAQYLA  130 (387)
T ss_pred             CCcCHHHHHHHHHHHHH
Confidence            89999999999887763

Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.

>PRK10875 recD exonuclease V subunit alpha; Provisional

Probab=91.48  E-value=0.35  Score=41.59  Aligned_cols=46  Identities=22%  Similarity=0.362  Sum_probs=26.2

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGK   47 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~   47 (180)
                      +|+||||+++.+...+......-...+.+...+.-....+.+.+..
T Consensus       176 pGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~  221 (615)
T PRK10875        176 PGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK  221 (615)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence            7999999998887764211111124555555554444445444443

>PRK14528 adenylate kinase; Provisional

Probab=91.47  E-value=0.12  Score=37.42  Aligned_cols=17  Identities=24%  Similarity=0.307  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +||+||||+|+.++..+
T Consensus         9 ~pGsGKtt~a~~la~~~   25 (186)
T PRK14528          9 PPGAGKGTQAKILCERL   25 (186)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            48999999999998774

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=91.43  E-value=0.34  Score=35.80  Aligned_cols=17  Identities=29%  Similarity=0.456  Sum_probs=15.2

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      -|+||||.++.++..+.
T Consensus        12 DGaGKTT~~~~L~~~l~   28 (208)
T COG0125          12 DGAGKTTQAELLKERLE   28 (208)
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            49999999999999874

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=91.39  E-value=0.14  Score=36.81  Aligned_cols=17  Identities=29%  Similarity=0.518  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||||++.++..+
T Consensus        11 ~sGsGKSTl~~~la~~l   27 (176)
T PRK09825         11 VSGSGKSLIGSKIAALF   27 (176)
T ss_pred             CCCCCHHHHHHHHHHhc
Confidence            47999999999999875

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=91.38  E-value=0.24  Score=36.51  Aligned_cols=17  Identities=35%  Similarity=0.407  Sum_probs=14.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||++.++.-.
T Consensus        38 ~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          38 PSGSGKSTLLNILGGLD   54 (218)
T ss_pred             CCCCCHHHHHHHHhCCc
Confidence            36999999999998764

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK09165 replicative DNA helicase; Provisional

Probab=91.38  E-value=0.68  Score=38.88  Aligned_cols=46  Identities=20%  Similarity=0.175  Sum_probs=26.8

Q ss_pred             CCCcHHHHHHHHHcccccccC------------CCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 046006            2 GGVGKTTLLTHINNKFLVSST------------DFDCVIWIVVSKDLQLEKIQEIVGKKV   49 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~------------~f~~~~wv~~~~~~~~~~~~~~i~~~l   49 (180)
                      ||+|||++|..++.+......            +-..++++  |-.-+..++...++...
T Consensus       226 pg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~f--SlEMs~~ql~~R~la~~  283 (497)
T PRK09165        226 PSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFF--SLEMSAEQLATRILSEQ  283 (497)
T ss_pred             CCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEE--eCcCCHHHHHHHHHHHh
Confidence            799999999888766421100            01223333  44556677777665543

>TIGR01968 minD_bact septum site-determining protein MinD

Probab=91.38  E-value=0.12  Score=39.01  Aligned_cols=17  Identities=41%  Similarity=0.681  Sum_probs=14.7

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++..+.
T Consensus        11 GGvGKTt~a~~lA~~la   27 (261)
T TIGR01968        11 GGVGKTTTTANLGTALA   27 (261)
T ss_pred             CCccHHHHHHHHHHHHH
Confidence            89999999999887753

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.

>CHL00072 chlL photochlorophyllide reductase subunit L

Probab=91.33  E-value=0.16  Score=39.43  Aligned_cols=17  Identities=35%  Similarity=0.587  Sum_probs=15.0

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++..+.
T Consensus         9 GGVGKTTta~nLA~~La   25 (290)
T CHL00072          9 GGIGKSTTSCNISIALA   25 (290)
T ss_pred             CCCcHHHHHHHHHHHHH
Confidence            89999999999888764

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=91.32  E-value=0.28  Score=38.73  Aligned_cols=35  Identities=26%  Similarity=0.240  Sum_probs=23.7

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKI   41 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~   41 (180)
                      .+|+|||+||++++..+.      -..+.+.........++
T Consensus        51 ~PG~gKT~la~~lA~~l~------~~~~~i~~t~~l~p~d~   85 (329)
T COG0714          51 PPGVGKTLLARALARALG------LPFVRIQCTPDLLPSDL   85 (329)
T ss_pred             CCCccHHHHHHHHHHHhC------CCeEEEecCCCCCHHHh
Confidence            489999999999998852      22344555555555554

>cd00880 Era_like Era (E

Probab=91.32  E-value=0.14  Score=34.64  Aligned_cols=16  Identities=25%  Similarity=0.416  Sum_probs=14.1

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      .+|+|||||++.+++.
T Consensus         4 ~~gsGKstl~~~l~~~   19 (163)
T cd00880           4 RTNAGKSSLLNALLGQ   19 (163)
T ss_pred             CCCCCHHHHHHHHhCc
Confidence            4799999999999876

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK13973 thymidylate kinase; Provisional

Probab=91.31  E-value=0.46  Score=35.10  Aligned_cols=17  Identities=24%  Similarity=0.460  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +.|+||||+++.++..+
T Consensus        11 ~dGsGKtTq~~~l~~~l   27 (213)
T PRK13973         11 GEGAGKSTQIRLLAERL   27 (213)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            36999999999999986

>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork

Probab=91.29  E-value=0.46  Score=36.11  Aligned_cols=44  Identities=18%  Similarity=0.202  Sum_probs=28.8

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKV   49 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l   49 (180)
                      +|+|||++|.+++.+.. . .+-..++|++..  .+..++...++...
T Consensus        28 pg~GKT~~~l~ia~~~a-~-~~~~~vly~SlE--m~~~~l~~R~la~~   71 (259)
T PF03796_consen   28 PGVGKTAFALQIALNAA-L-NGGYPVLYFSLE--MSEEELAARLLARL   71 (259)
T ss_dssp             TTSSHHHHHHHHHHHHH-H-TTSSEEEEEESS--S-HHHHHHHHHHHH
T ss_pred             ccCCchHHHHHHHHHHH-H-hcCCeEEEEcCC--CCHHHHHHHHHHHh
Confidence            79999999999999853 2 222456666543  45556666665554

Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=91.28  E-value=1.3  Score=30.22  Aligned_cols=17  Identities=35%  Similarity=0.624  Sum_probs=14.6

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+|||+++..+...+.
T Consensus         9 gg~gkt~~~~~~a~~~~   25 (139)
T cd02038           9 GGVGKTNISANLALALA   25 (139)
T ss_pred             CCCcHHHHHHHHHHHHH
Confidence            89999999999887753

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK06851 hypothetical protein; Provisional

Probab=91.27  E-value=0.18  Score=40.54  Aligned_cols=38  Identities=24%  Similarity=0.323  Sum_probs=27.8

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEK   40 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~   40 (180)
                      .+|+|||||+++++...  ..+.++..++-|-+.+.++..
T Consensus       222 ~pG~GKstl~~~i~~~a--~~~G~~v~~~hC~~dPdslD~  259 (367)
T PRK06851        222 RPGTGKSTMLKKIAKAA--EERGFDVEVYHCGFDPDSLDM  259 (367)
T ss_pred             CCCCcHHHHHHHHHHHH--HhCCCeEEEEeCCCCCCCcce
Confidence            48999999999999984  346677777766665544443

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=91.26  E-value=1.1  Score=34.91  Aligned_cols=16  Identities=25%  Similarity=0.264  Sum_probs=13.1

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      +|+||||+|+.+..-+
T Consensus        71 ~GSGKSTlar~L~~ll   86 (290)
T TIGR00554        71 VAVGKSTTARILQALL   86 (290)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            6999999998876553

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=91.23  E-value=0.15  Score=33.34  Aligned_cols=17  Identities=41%  Similarity=0.649  Sum_probs=14.2

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..+...+.
T Consensus         9 gg~gkt~~~~~la~~~~   25 (106)
T cd03111           9 GGVGATTLAANLAVALA   25 (106)
T ss_pred             CCCcHHHHHHHHHHHHH
Confidence            89999999988877653

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=91.18  E-value=0.14  Score=38.25  Aligned_cols=17  Identities=29%  Similarity=0.440  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||||++.+...+
T Consensus        41 ~~GsGKTTl~~~L~~~l   57 (229)
T PRK09270         41 PPGAGKSTLAEFLEALL   57 (229)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999998875

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=91.17  E-value=0.27  Score=36.33  Aligned_cols=16  Identities=31%  Similarity=0.540  Sum_probs=14.2

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      .|+|||||.+.++...
T Consensus        35 nGsGKSTLl~~i~G~~   50 (220)
T cd03265          35 NGAGKTTTIKMLTTLL   50 (220)
T ss_pred             CCCCHHHHHHHHhCCC
Confidence            6999999999998764

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=91.16  E-value=0.14  Score=37.46  Aligned_cols=17  Identities=53%  Similarity=0.688  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||||+..+.++.
T Consensus        13 ~~g~GKTtl~~~l~~~~   29 (219)
T COG1100          13 DGGVGKTTLLNRLVGDE   29 (219)
T ss_pred             CCCccHHHHHHHHhcCc
Confidence            48999999999999874

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=91.15  E-value=0.47  Score=35.17  Aligned_cols=38  Identities=21%  Similarity=0.196  Sum_probs=24.9

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEI   44 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~   44 (180)
                      +|+|||++|.+++...  .++ =..++|++...  +..++.+.
T Consensus        25 ~G~GKt~~~~~~~~~~--~~~-g~~~~y~s~e~--~~~~l~~~   62 (224)
T TIGR03880        25 YGTGKTTFSLQFLYQG--LKN-GEKAMYISLEE--REERILGY   62 (224)
T ss_pred             CCCCHHHHHHHHHHHH--HhC-CCeEEEEECCC--CHHHHHHH
Confidence            7999999999998763  222 34577777665  34444433

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA)

Probab=91.13  E-value=0.24  Score=37.66  Aligned_cols=17  Identities=41%  Similarity=0.634  Sum_probs=14.7

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++..+.
T Consensus         9 gG~GKtt~a~~la~~~a   25 (254)
T cd00550           9 GGVGKTTISAATAVRLA   25 (254)
T ss_pred             CCchHHHHHHHHHHHHH
Confidence            89999999999887753

This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]

Probab=91.11  E-value=0.48  Score=39.13  Aligned_cols=82  Identities=17%  Similarity=0.160  Sum_probs=45.1

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC--------CCCCC-----CcChHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLD--------GDSWK-----NKNSEEKAL   67 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--------~~~~~-----~~~~~~~~~   67 (180)
                      +.|.|||.+|..++....   ..   ++++ +....-..+-.+.+...+....        .....     ..+.+.+..
T Consensus        63 pTGaGKT~va~~~~~~~~---~~---~Lvl-v~~~~L~~Qw~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~vat~qtl~~  135 (442)
T COG1061          63 PTGAGKTVVAAEAIAELK---RS---TLVL-VPTKELLDQWAEALKKFLLLNDEIGIYGGGEKELEPAKVTVATVQTLAR  135 (442)
T ss_pred             CCCCCHHHHHHHHHHHhc---CC---EEEE-ECcHHHHHHHHHHHHHhcCCccccceecCceeccCCCcEEEEEhHHHhh
Confidence            479999999999999853   22   4444 3333333333344444443320        00011     112333333


Q ss_pred             --HHHHHhCCCcEEEEEeCCCCcc
Q 046006           68 --EIFRFLSKKKFVLLLDDKWERV   89 (180)
Q Consensus        68 --~l~~~L~~k~~LlVlDdv~~~~   89 (180)
                        .+.+...++..|||+|.|.+..
T Consensus       136 ~~~l~~~~~~~~~liI~DE~Hh~~  159 (442)
T COG1061         136 RQLLDEFLGNEFGLIIFDEVHHLP  159 (442)
T ss_pred             hhhhhhhcccccCEEEEEccccCC
Confidence              2455556688999999998763

>PRK13869 plasmid-partitioning protein RepA; Provisional

Probab=91.03  E-value=0.25  Score=40.31  Aligned_cols=17  Identities=41%  Similarity=0.630  Sum_probs=14.9

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|.+++..+.
T Consensus       131 GGvGKTTta~nLA~~LA  147 (405)
T PRK13869        131 GGSGKTTTSAHLAQYLA  147 (405)
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            89999999999888763

>PRK14737 gmk guanylate kinase; Provisional

Probab=91.01  E-value=0.16  Score=36.80  Aligned_cols=17  Identities=24%  Similarity=0.507  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||||++.+....
T Consensus        12 psG~GK~tl~~~l~~~~   28 (186)
T PRK14737         12 VAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CCCCCHHHHHHHHHhcC
Confidence            48999999999998874

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=90.95  E-value=0.28  Score=36.00  Aligned_cols=17  Identities=35%  Similarity=0.444  Sum_probs=14.5

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||++.++.-.
T Consensus        33 ~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          33 PNGAGKTTLMRILATLT   49 (211)
T ss_pred             CCCCCHHHHHHHHhCCC
Confidence            36999999999998764

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=90.95  E-value=0.28  Score=36.06  Aligned_cols=16  Identities=44%  Similarity=0.657  Sum_probs=14.1

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      .|+|||||++.++...
T Consensus        37 nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        37 SGAGKTTLLKLLYGAL   52 (214)
T ss_pred             CCCCHHHHHHHHhCCC
Confidence            6999999999998764

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=90.91  E-value=0.15  Score=35.35  Aligned_cols=16  Identities=44%  Similarity=0.565  Sum_probs=14.0

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      .|+|||||++.+-...
T Consensus        10 ~g~GKTTL~q~L~~~~   25 (143)
T PF10662_consen   10 SGSGKTTLAQALNGEE   25 (143)
T ss_pred             CCCCHHHHHHHHcCCC
Confidence            5999999999998773

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=90.90  E-value=7.1  Score=31.23  Aligned_cols=36  Identities=22%  Similarity=0.275  Sum_probs=29.0

Q ss_pred             ceEeecCCChhhhHHHHHHH---HHHHHHHHcCCChHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK---LAQTVAKKCVGLPLAL  140 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~---~~~~i~~~c~g~PLal  140 (180)
                      ..+.+.+++.++..+.+.+.   ....++..++|.|+..
T Consensus       184 q~i~~~~~~~~~~~~~L~~~~~~~~~~~l~~~~Gsp~~A  222 (342)
T PRK06964        184 RQFPMTVPAPEAAAAWLAAQGVADADALLAEAGGAPLAA  222 (342)
T ss_pred             EEEEecCCCHHHHHHHHHHcCCChHHHHHHHcCCCHHHH
Confidence            57889999999999999876   3445688899999743

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=90.83  E-value=0.3  Score=35.82  Aligned_cols=16  Identities=44%  Similarity=0.441  Sum_probs=14.2

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      .|+|||||.+.++...
T Consensus        35 nGsGKSTLl~~l~G~~   50 (213)
T cd03301          35 SGCGKTTTLRMIAGLE   50 (213)
T ss_pred             CCCCHHHHHHHHhCCC
Confidence            6999999999998764

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>CHL00175 minD septum-site determining protein; Validated

Probab=90.80  E-value=0.15  Score=39.29  Aligned_cols=17  Identities=41%  Similarity=0.618  Sum_probs=14.8

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++.-+.
T Consensus        25 GGvGKTt~a~nLA~~La   41 (281)
T CHL00175         25 GGVGKTTTTANLGMSIA   41 (281)
T ss_pred             CCCcHHHHHHHHHHHHH
Confidence            89999999999887753

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=90.80  E-value=0.3  Score=35.19  Aligned_cols=16  Identities=50%  Similarity=0.843  Sum_probs=14.0

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      .|+|||||.+.+....
T Consensus        27 nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        27 NGAGKSTLLLHLNGLL   42 (190)
T ss_pred             CCCCHHHHHHHHhCCC
Confidence            6999999999998764

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK13768 GTPase; Provisional

Probab=90.75  E-value=0.26  Score=37.51  Aligned_cols=17  Identities=35%  Similarity=0.524  Sum_probs=14.5

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .||+||||++..+...+
T Consensus        10 ~~G~GKTt~~~~~~~~l   26 (253)
T PRK13768         10 TAGSGKTTLTKALSDWL   26 (253)
T ss_pred             CCCccHHHHHHHHHHHH
Confidence            48999999998888765

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=90.75  E-value=0.25  Score=35.43  Aligned_cols=28  Identities=29%  Similarity=0.405  Sum_probs=20.5

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIV   31 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~   31 (180)
                      ++|+|||||+..++..++   ..|...+.-+
T Consensus        10 psg~GK~~l~~~L~~~~~---~~~~~~v~~T   37 (183)
T PF00625_consen   10 PSGSGKSTLAKRLIQEFP---DKFGRVVSHT   37 (183)
T ss_dssp             STTSSHHHHHHHHHHHST---TTEEEEEEEE
T ss_pred             CCCCCHHHHHHHHHHhcc---cccccceeec
Confidence            479999999999998854   5664444433

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PRK10818 cell division inhibitor MinD; Provisional

Probab=90.73  E-value=0.15  Score=38.92  Aligned_cols=17  Identities=47%  Similarity=0.606  Sum_probs=15.0

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++..+.
T Consensus        12 GGvGKTt~a~nlA~~la   28 (270)
T PRK10818         12 GGVGKTTSSAAIATGLA   28 (270)
T ss_pred             CCCcHHHHHHHHHHHHH
Confidence            89999999999988763

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=90.72  E-value=0.33  Score=34.70  Aligned_cols=25  Identities=36%  Similarity=0.320  Sum_probs=18.9

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEE
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWI   30 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv   30 (180)
                      .|.|||||++.++...    ....+.+.+
T Consensus        35 nGsGKSTLl~~l~G~~----~~~~G~i~~   59 (178)
T cd03229          35 SGSGKSTLLRCIAGLE----EPDSGSILI   59 (178)
T ss_pred             CCCCHHHHHHHHhCCC----CCCceEEEE
Confidence            6999999999998764    334566555

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK08356 hypothetical protein; Provisional

Probab=90.72  E-value=0.16  Score=36.89  Aligned_cols=14  Identities=29%  Similarity=0.287  Sum_probs=12.5

Q ss_pred             CCCCcHHHHHHHHH
Q 046006            1 MGGVGKTTLLTHIN   14 (180)
Q Consensus         1 mgGiGKTtLA~~~~   14 (180)
                      ++|+||||+|+.+.
T Consensus        13 ~~gsGK~t~a~~l~   26 (195)
T PRK08356         13 KIAAGKTTVAKFFE   26 (195)
T ss_pred             CCCCCHHHHHHHHH
Confidence            58999999999994

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=90.69  E-value=0.27  Score=33.90  Aligned_cols=31  Identities=19%  Similarity=0.327  Sum_probs=21.0

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK   34 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~   34 (180)
                      .|+|||||++.+.+.+  .+..+...+..+...
T Consensus         9 ~~sGKTTl~~~Li~~l--~~~g~~v~~ik~~~~   39 (140)
T PF03205_consen    9 KNSGKTTLIRKLINEL--KRRGYRVAVIKHTDH   39 (140)
T ss_dssp             TTSSHHHHHHHHHHHH--HHTT--EEEEEE-ST
T ss_pred             CCCCHHHHHHHHHHHH--hHcCCceEEEEEccC
Confidence            5899999999999996  335566555665443

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=90.66  E-value=0.44  Score=39.83  Aligned_cols=32  Identities=13%  Similarity=0.052  Sum_probs=21.8

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK   34 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~   34 (180)
                      .+|+|||+||.+++..-  ..+.=...+||+..+
T Consensus        29 ~pGsGKT~la~qfl~~g--~~~~ge~~lyvs~eE   60 (484)
T TIGR02655        29 TSGTGKTLFSIQFLYNG--IIHFDEPGVFVTFEE   60 (484)
T ss_pred             CCCCCHHHHHHHHHHHH--HHhCCCCEEEEEEec
Confidence            48999999999987652  112224677877653

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK13695 putative NTPase; Provisional

Probab=90.61  E-value=0.16  Score=36.17  Aligned_cols=17  Identities=47%  Similarity=0.597  Sum_probs=14.8

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||||++.+++.+
T Consensus         8 ~~G~GKTTll~~i~~~l   24 (174)
T PRK13695          8 PPGVGKTTLVLKIAELL   24 (174)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            37999999999988775

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=90.57  E-value=0.18  Score=36.46  Aligned_cols=16  Identities=31%  Similarity=0.441  Sum_probs=14.1

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      +.|+||||+++.+...
T Consensus         7 ~~GsGKSTl~~~L~~~   22 (193)
T cd01673           7 NIGAGKSTLAKELAEH   22 (193)
T ss_pred             CCCCCHHHHHHHHHHH
Confidence            4699999999999876

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PRK05439 pantothenate kinase; Provisional

Probab=90.56  E-value=1.3  Score=34.85  Aligned_cols=72  Identities=13%  Similarity=-0.064  Sum_probs=34.6

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCc
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKK   77 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~   77 (180)
                      +|+||||+|+.+...+... ..-..+.-+++..-+...+.+..  +.+... ...+..-+.+.+...|.....++.
T Consensus        95 ~gsGKSTla~~L~~~l~~~-~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~-kg~Pes~D~~~l~~~L~~Lk~G~~  166 (311)
T PRK05439         95 VAVGKSTTARLLQALLSRW-PEHPKVELVTTDGFLYPNAVLEE--RGLMKR-KGFPESYDMRALLRFLSDVKSGKP  166 (311)
T ss_pred             CCCCHHHHHHHHHHHHHhh-CCCCceEEEeccccccCHHHHhh--hhcccc-CCCcccccHHHHHHHHHHHHcCCC
Confidence            7999999999998764211 11122334444443322222211  111000 111233456666666666666654

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=90.56  E-value=0.19  Score=34.71  Aligned_cols=16  Identities=38%  Similarity=0.590  Sum_probs=14.0

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      .+|+|||||...+.+.
T Consensus         8 ~~~~GKTsl~~~l~~~   23 (164)
T cd04139           8 AGGVGKSALTLQFMYD   23 (164)
T ss_pred             CCCCCHHHHHHHHHhC
Confidence            3799999999999875

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PRK06851 hypothetical protein; Provisional

Probab=90.53  E-value=0.23  Score=39.88  Aligned_cols=37  Identities=30%  Similarity=0.483  Sum_probs=25.9

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLE   39 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~   39 (180)
                      .||+|||||.+.+++.+.  ...|+...+.|.+.+.++.
T Consensus        38 ~pGtGKStl~~~i~~~~~--~~g~~Ve~~~~~~d~~slD   74 (367)
T PRK06851         38 GPGTGKSTLMKKIGEEFL--EKGYDVEFLHCSSDNDSLD   74 (367)
T ss_pred             CCCCCHHHHHHHHHHHHH--HcCCeEEEEEcCCCCCcee
Confidence            379999999999999863  2356666666655544433

>COG0645 Predicted kinase [General function prediction only]

Probab=90.49  E-value=0.18  Score=35.89  Aligned_cols=17  Identities=29%  Similarity=0.493  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+||||+|+.+...+
T Consensus         9 l~GsGKstlA~~l~~~l   25 (170)
T COG0645           9 LPGSGKSTLARGLAELL   25 (170)
T ss_pred             CCCccHhHHHHHHHhhc
Confidence            47999999999999886

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=90.47  E-value=0.19  Score=34.94  Aligned_cols=15  Identities=40%  Similarity=0.671  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus         9 ~~~GKTsli~~~~~~   23 (164)
T smart00173        9 GGVGKSALTIQFVQG   23 (164)
T ss_pred             CCCCHHHHHHHHHhC
Confidence            799999999999765

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	180
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	2e-24
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	1e-22
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-14
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	7e-06

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 98.1 bits (244), Expect = 2e-24
 Identities = 24/260 (9%), Positives = 60/260 (23%), Gaps = 81/260 (31%)

Query: 1   MGGVGKTTLLTHI-NNKFLVSSTDFDCVIWIVVSKDL------QLEKIQEIVGKKVGLLD 53
             G GK+ + +   +    +   ++D ++W+  S             I  ++  +  LL+
Sbjct: 160 RAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLN 219

Query: 54  GDSWKNKNSEEKALEIFRFL-SKKKFVLLLDDKWERVDLNKGL-------------FVCG 99
             S ++  S      I   L  +   + + DD  +   +                  +  
Sbjct: 220 FPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISN 279

Query: 100 LVEANK-NFKVECLSDNDAWELLRQK------------LAQTVAKKCVGLPLALITIGRA 146
                    +V  L  ++ ++ L               +     +   G P  L+   ++
Sbjct: 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKS 339

Query: 147 IACKRTPREW-----------------------------------------------SLY 159
              K   +                                                  + 
Sbjct: 340 CEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVM 399

Query: 160 PEDYLISKEILIYCWIDKFH 179
           P    I  ++          
Sbjct: 400 PPGVDIPVKLWSCVIPVDIC 419

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 93.0 bits (231), Expect = 1e-22
 Identities = 42/251 (16%), Positives = 68/251 (27%), Gaps = 76/251 (30%)

Query: 1   MGGVGKTTLLTHI-NNKFLVSSTDFDCVIWIVVSKD---LQLEKIQEIVGKKVGLLDGDS 56
           M G GK+ L      +  L+       V W+ V K      L K+Q +  +         
Sbjct: 155 MAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQ 214

Query: 57  WKNKNSEEKALEIFRFLSKK--KFVLLLDDKWERVDLNKGLF------------VCGLVE 102
               N EE    +   + +K  + +L+LDD W+   L                 V   V 
Sbjct: 215 RLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVM 274

Query: 103 ANKN--FKVECLSDNDAWELLRQK----------LAQTVAKKCVGLPLALITIGRAIACK 150
             K        L      E+L              A ++ K+C G PL +  IG  +   
Sbjct: 275 GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDF 334

Query: 151 RTPREW----------------------------------------------SLYPEDYL 164
               E+                                              S+  +D  
Sbjct: 335 PNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVK 394

Query: 165 ISKEILIYCWI 175
           +  ++L   W 
Sbjct: 395 VPTKVLCILWD 405

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 70.3 bits (171), Expect = 1e-14
 Identities = 38/242 (15%), Positives = 66/242 (27%), Gaps = 65/242 (26%)

Query: 1   MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK----DLQLEKIQ----EIVGKKVGLL 52
           + G GKT +   +   + V       + W+ +      +  LE +Q    +I        
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 53  DGDSWKNKNSEEKALEIFRFLSKKKFV---LLLDDKWERVDLNKGLFVCG-LV------- 101
           D  S           E+ R L  K +    L+L +       N     C  L+       
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 102 ------EANKNFKVE----CLSDNDAWELLRQKLAQTVAK----KCVGLPLALITIGRAI 147
                     +  ++     L+ ++   LL + L               P  L  I  +I
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337

Query: 148 -------------ACKR------------TPREW-------SLYPEDYLISKEILIYCWI 175
                         C +             P E+       S++P    I   +L   W 
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397

Query: 176 DK 177
           D 
Sbjct: 398 DV 399

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 44.4 bits (105), Expect = 7e-06
 Identities = 38/191 (19%), Positives = 66/191 (34%), Gaps = 32/191 (16%)

Query: 1   MGGVGKTTLLTHINNKFLVSSTDF-DCVIWIVVSKDLQ---LEKIQEIVGKKVGLLDGDS 56
           M G GK+ L         +    F   V W+ + K  +   L K+Q +  +         
Sbjct: 155 MAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQ 214

Query: 57  WKNKNSEEKALEIFRFLSKK--KFVLLLDDKWERVDLNKGLFVCGLV---------EANK 105
               N EE    +   + +K  + +L+LDD W+   L      C ++         ++  
Sbjct: 215 RLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVM 274

Query: 106 NFKV-----ECLSDNDAWELLRQKL----------AQTVAKKCVGLPLALITIGRAIACK 150
             K        L      E+L   +          A ++ K+C G PL +  IG  +  +
Sbjct: 275 GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALL--R 332

Query: 151 RTPREWSLYPE 161
             P  W+ Y  
Sbjct: 333 DFPNRWAYYLR 343

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	180
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.95
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.94
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.9
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	99.1
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.03
2fna_A	357	Conserved hypothetical protein; structural genomic	98.98
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	98.79
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	98.78
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.72
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.62
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	98.55
2chg_A	226	Replication factor C small subunit; DNA-binding pr	98.38
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	98.14
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	98.06
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.79
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.73
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.69
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.59
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	97.58
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.49
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	97.48
3pvs_A	447	Replication-associated recombination protein A; ma	97.44
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.4
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.39
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.39
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.37
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.37
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.28
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.28
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.28
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.27
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.25
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.23
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	97.13
3bos_A	242	Putative DNA replication factor; P-loop containing	97.12
2chq_A	319	Replication factor C small subunit; DNA-binding pr	97.11
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.11
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.09
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.06
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.95
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.94
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.93
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.92
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.9
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.88
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.86
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.85
3io5_A	333	Recombination and repair protein; storage dimer, i	96.82
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.81
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.75
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.74
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.64
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.62
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.6
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.55
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.54
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.54
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.53
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.53
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.5
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.49
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.46
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.44
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.3
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.29
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.16
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.09
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.02
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	95.94
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	95.92
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	95.91
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.77
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.75
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.7
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.7
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	95.65
3co5_A	143	Putative two-component system transcriptional RES	95.6
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	95.59
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	95.5
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	95.5
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.46
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.42
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.42
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.34
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	95.32
3ice_A	422	Transcription termination factor RHO; transcriptio	95.3
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.21
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	95.18
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.12
4a74_A	231	DNA repair and recombination protein RADA; hydrola	95.12
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	95.1
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	95.09
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.08
2xxa_A	433	Signal recognition particle protein; protein trans	95.03
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.01
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	95.01
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	94.97
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	94.96
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	94.77
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	94.72
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	94.69
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	94.69
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	94.66
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	94.65
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	94.59
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	94.58
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	94.57
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	94.51
1via_A	175	Shikimate kinase; structural genomics, transferase	94.48
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	94.4
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	94.4
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	94.37
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	94.32
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	94.3
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	94.28
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	94.27
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	94.23
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	94.09
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	94.07
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	94.01
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	94.0
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	93.99
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	93.97
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	93.95
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	93.91
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	93.9
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	93.9
3cwq_A	209	Para family chromosome partitioning protein; alpha	93.89
2vli_A	183	Antibiotic resistance protein; transferase, tunica	93.88
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	93.86
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	93.84
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	93.84
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	93.83
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	93.79
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	93.79
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	93.79
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	93.73
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	93.73
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	93.71
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	93.68
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	93.66
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	93.64
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	93.64
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	93.6
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	93.6
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	93.59
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	93.57
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	93.56
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	93.54
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	93.53
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	93.48
2r6a_A	454	DNAB helicase, replicative helicase; replication,	93.48
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	93.44
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	93.44
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	93.41
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	93.41
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	93.38
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	93.38
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	93.38
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	93.35
3l0o_A	427	Transcription termination factor RHO; helicase, RH	93.34
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	93.31
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	93.31
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	93.3
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	93.3
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	93.29
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	93.25
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	93.24
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	93.21
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	93.15
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	93.12
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	93.04
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	93.01
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	92.96
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	92.91
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	92.9
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	92.88
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	92.84
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	92.8
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	92.78
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	92.77
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	92.76
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	92.73
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	92.67
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	92.65
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	92.64
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	92.63
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	92.59
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	92.58
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	92.53
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	92.53
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	92.5
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	92.5
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	92.45
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	92.42
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	92.38
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	92.36
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	92.35
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	92.35
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	92.23
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	92.21
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	92.16
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	92.15
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	91.94
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	91.9
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	91.9
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	91.87
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	91.84
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	91.79
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	91.76
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	91.71
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	91.68
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	91.68
3end_A	307	Light-independent protochlorophyllide reductase ir	91.65
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	91.64
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	91.64
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	91.6
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	91.57
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	91.53
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	91.52
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	91.52
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	91.52
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	91.52
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	91.46
1tue_A	212	Replication protein E1; helicase, replication, E1E	91.36
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	91.34
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	91.21
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	91.2
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	91.18
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	91.14
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	91.13
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	91.11
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	91.09
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	91.08
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	91.04
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	91.04
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	91.0
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	91.0
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	90.99
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	90.96
2qgz_A	308	Helicase loader, putative primosome component; str	90.9
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	90.81
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	90.77
3vr4_A	600	V-type sodium ATPase catalytic subunit A; V-ATPase	90.76
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	90.75
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	90.71
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	90.68
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	90.65
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	90.63
3pg5_A	361	Uncharacterized protein; structural genomics, PSI-	90.62
2r44_A	331	Uncharacterized protein; putative ATPase, structur	90.6
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	90.54
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	90.53
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	90.5
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	90.34
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	90.33
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	90.32
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	90.32
1b0u_A	262	Histidine permease; ABC transporter, transport pro	90.31
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	90.31
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	90.27
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	90.26
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	90.25
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	90.25
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	90.24
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	90.23
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	90.19
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	90.19
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	90.18
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	90.14
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	90.11
3fwy_A	314	Light-independent protochlorophyllide reductase I	90.11
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	90.08
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	90.06
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	89.97
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	89.93
1sgw_A	214	Putative ABC transporter; structural genomics, P p	89.83
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	89.79
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	89.77
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	89.76
2hf9_A	226	Probable hydrogenase nickel incorporation protein	89.64
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	89.63
1ji0_A	240	ABC transporter; ATP binding protein, structural g	89.57
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	89.57
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	89.56
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	89.55
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	89.55
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	89.54
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	89.54
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	89.47
1g6h_A	257	High-affinity branched-chain amino acid transport	89.37
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	89.34
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	89.33
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	89.2
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	89.19
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	89.16
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	89.08
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	89.08
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	88.99
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	88.97
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	88.94
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	88.92
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	88.9
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	88.9
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	88.81
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	88.81
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	88.77
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	88.77
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	88.72
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	88.68
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	88.65
2wji_A	165	Ferrous iron transport protein B homolog; membrane	88.49
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	88.46
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	88.35
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	88.32
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	88.28
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	88.25
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	88.2
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	88.2
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	88.19
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	88.13
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	88.08
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	88.06
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	88.0
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	87.92
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	87.87
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	87.86
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	87.67
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	87.65
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	87.44
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	87.44
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	87.43
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	87.35
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	87.32
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	87.31
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	87.21
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	87.16
3igf_A	374	ALL4481 protein; two-domained protein consisting o	87.13
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	87.11
1nrj_B	218	SR-beta, signal recognition particle receptor beta	87.01
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	87.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	86.96
2ged_A	193	SR-beta, signal recognition particle receptor beta	86.96
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	86.95
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	86.94
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	86.9
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	86.82
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	86.82
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	86.8
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	86.77
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	86.75
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	86.72
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	86.68
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	86.68
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	86.65
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	86.65
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	86.6
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	86.6
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	86.55
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	86.54
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	86.51
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	86.51
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	86.46
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	86.38
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	86.24
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	86.2
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	86.09
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	86.08
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	86.06
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	86.06
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	86.04
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	86.03
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	86.0
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	86.0
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	85.97
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	85.83
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	85.81
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	85.8
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	85.74
2eyu_A	261	Twitching motility protein PILT; pilus retraction	85.74
2ghi_A	260	Transport protein; multidrug resistance protein, M	85.73
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	85.7
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	85.7
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	85.69
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	85.67
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	85.66
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	85.66
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	85.65
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	85.62
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	85.61
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	85.6
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	85.59
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	85.58
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	85.5
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	85.47
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	85.42
2og2_A	359	Putative signal recognition particle receptor; nuc	85.42
3ez9_A	403	Para; DNA binding, winged-HTH, partition, biosynth	85.42
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	85.37
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	85.34
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	85.34
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	85.34
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	85.32
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	85.31
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	85.27
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	85.26
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	85.19
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	85.14
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	85.13
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	85.12
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	85.05
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	85.04
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	85.03
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	85.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	84.99
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	84.85
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	84.81
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	84.78
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	84.7
2fh5_B	214	SR-beta, signal recognition particle receptor beta	84.59
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	84.54
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	84.53
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	84.53
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	84.5
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	84.45
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	84.43
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	84.41
3llu_A	196	RAS-related GTP-binding protein C; structural geno	84.34
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	84.21
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	84.21
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	84.17
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	84.15
3kta_A	182	Chromosome segregation protein SMC; structural mai	84.14
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	83.97
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	83.97
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	83.87
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	83.84
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	83.79
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	83.76
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	83.75
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	83.7
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	83.69
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	83.69
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	83.67
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	83.66
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	83.61
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	83.55
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	83.5
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	83.41
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	83.36
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	83.33
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	83.2
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	83.13
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	83.11
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	83.07
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	83.05
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	82.99
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	82.98
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	82.96
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	82.84
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	82.77
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	82.73
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	82.62
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	82.6
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	82.6
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	82.58
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	82.49
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	82.43
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	82.38
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	82.38
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	82.37
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	82.36
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	82.36
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	82.27
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	82.25
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	82.24
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	82.11
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	82.06
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	82.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	81.96
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	81.92
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	81.84
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	81.79
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	81.77
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	81.63
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	81.6
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	81.57
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	81.53
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	81.51
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	81.5
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	81.41
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	81.17
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	80.99
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	80.98
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	80.93
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	80.78
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	80.75
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	80.56
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	80.51

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=100.00  E-value=9.6e-33  Score=228.66  Aligned_cols=173  Identities=15%  Similarity=0.192  Sum_probs=139.3

Q ss_pred             CCCCcHHHHHHHHHc--ccccccCCCCeEEEEEeCCCC--CHHHHHHHHHHHhCCCCC----CCCCCcChHHHHHHHHHH
Q 046006            1 MGGVGKTTLLTHINN--KFLVSSTDFDCVIWIVVSKDL--QLEKIQEIVGKKVGLLDG----DSWKNKNSEEKALEIFRF   72 (180)
Q Consensus         1 mgGiGKTtLA~~~~~--~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~~~l~~~   72 (180)
                      |||+||||||+++|+  + ..++.+|++++||++++.+  +...++..|+++++....    ......+.+++...+++.
T Consensus       160 ~gGvGKTtLA~~v~~~~~-~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~  238 (549)
T 2a5y_B          160 RAGSGKSVIASQALSKSD-QLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNA  238 (549)
T ss_dssp             STTSSHHHHHHHHHHHCS-STBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhhh-HHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHH
Confidence            799999999999998  4 2577999999999999875  889999999999976411    112233567788999999


Q ss_pred             hCCC-cEEEEEeCCCCcccc--cc--c---------cccccccc-ccceEeecCCChhhhHHHHHHH------------H
Q 046006           73 LSKK-KFVLLLDDKWERVDL--NK--G---------LFVCGLVE-ANKNFKVECLSDNDAWELLRQK------------L  125 (180)
Q Consensus        73 L~~k-~~LlVlDdv~~~~~l--~~--g---------~~~~~~~~-~~~~~~l~~L~~~~a~~Lf~~~------------~  125 (180)
                      |+++ |+||||||||+.+++  ..  |         ..++..++ ...+|+|++|+.++|++||.++            .
T Consensus       239 L~~~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~  318 (549)
T 2a5y_B          239 LIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDV  318 (549)
T ss_dssp             HTTSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHH
T ss_pred             HcCCCcEEEEEECCCCchhhcccccCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHH
Confidence            9996 999999999998753  22  3         33444444 3367999999999999999987            5


Q ss_pred             HHHHHHHcCCChHHHHHHHHHhcCCCCCCce-------------------------------------------------
Q 046006          126 AQTVAKKCVGLPLALITIGRAIACKRTPREW-------------------------------------------------  156 (180)
Q Consensus       126 ~~~i~~~c~g~PLal~~~~~~L~~~~~~~~w-------------------------------------------------  156 (180)
                      +.+|+++|+|+||||+++|+.|+.+ + ..|                                                 
T Consensus       319 ~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~l  396 (549)
T 2a5y_B          319 LNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFA  396 (549)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGG
T ss_pred             HHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHHhhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhhe
Confidence            8999999999999999999998653 1 111                                                 


Q ss_pred             eecCCCcccCHHHHHHHHHhc--CCC
Q 046006          157 SLYPEDYLISKEILIYCWIDK--FHI  180 (180)
Q Consensus       157 s~fp~~~~i~~~~Li~~Wiae--g~i  180 (180)
                      |+||+++.|+    +++|+|+  |||
T Consensus       397 s~fp~~~~i~----i~~w~a~~~G~i  418 (549)
T 2a5y_B          397 VVMPPGVDIP----VKLWSCVIPVDI  418 (549)
T ss_dssp             GSSCTTCCEE----HHHHHHHSCC--
T ss_pred             eeeCCCCeee----eeeeeeecccee
Confidence            7999999999    8999999  886

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.95  E-value=4.8e-27  Score=208.52  Aligned_cols=176  Identities=22%  Similarity=0.327  Sum_probs=139.1

Q ss_pred             CCCCcHHHHHHHHHcccccccCCC-CeEEEEEeCCCCC--HHHHHHHHHHHhCCCCC-CCCCCcChHHHHHHHHHHhCCC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDF-DCVIWIVVSKDLQ--LEKIQEIVGKKVGLLDG-DSWKNKNSEEKALEIFRFLSKK   76 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f-~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~k   76 (180)
                      |||+||||||++++++......+| ++++|+++++..+  ....+..++..+..... ......+.+++...++..+.++
T Consensus       155 ~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~  234 (1249)
T 3sfz_A          155 MAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRK  234 (1249)
T ss_dssp             STTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSS
T ss_pred             CCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhcc
Confidence            799999999999999853334444 7888999988543  44557778888765411 1233457888999999999877


Q ss_pred             --cEEEEEeCCCCcccccc---c---------ccccc-cccccceEeecC-CChhhhHHHHHHH----------HHHHHH
Q 046006           77 --KFVLLLDDKWERVDLNK---G---------LFVCG-LVEANKNFKVEC-LSDNDAWELLRQK----------LAQTVA  130 (180)
Q Consensus        77 --~~LlVlDdv~~~~~l~~---g---------~~~~~-~~~~~~~~~l~~-L~~~~a~~Lf~~~----------~~~~i~  130 (180)
                        |+||||||||+..+++.   |         ..++. .......+++++ |++++|++||...          .+++|+
T Consensus       235 ~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~  314 (1249)
T 3sfz_A          235 HPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSII  314 (1249)
T ss_dssp             SCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHH
T ss_pred             CCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHH
Confidence              99999999999988776   3         33332 234557889996 9999999999987          799999


Q ss_pred             HHcCCChHHHHHHHHHhcCCCCCCce------------------------------------------------eecCCC
Q 046006          131 KKCVGLPLALITIGRAIACKRTPREW------------------------------------------------SLYPED  162 (180)
Q Consensus       131 ~~c~g~PLal~~~~~~L~~~~~~~~w------------------------------------------------s~fp~~  162 (180)
                      ++|+|+||||+++|++|+.+.  ..|                                                ++||++
T Consensus       315 ~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~  392 (1249)
T 3sfz_A          315 KECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKD  392 (1249)
T ss_dssp             HHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTT
T ss_pred             HHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCC
Confidence            999999999999999998633  122                                                899999


Q ss_pred             cccCHHHHHHHHHhcC
Q 046006          163 YLISKEILIYCWIDKF  178 (180)
Q Consensus       163 ~~i~~~~Li~~Wiaeg  178 (180)
                      +.|+.+.++.+|.+++
T Consensus       393 ~~i~~~~~~~~~~~~~  408 (1249)
T 3sfz_A          393 VKVPTKVLCVLWDLET  408 (1249)
T ss_dssp             CCEEHHHHHHHHTCCH
T ss_pred             CeeCHHHHHHHhCCCH
Confidence            9999999999998753

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.94  E-value=1.6e-27  Score=205.43  Aligned_cols=177  Identities=19%  Similarity=0.231  Sum_probs=131.6

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCe-EEEEEeCCCCCHHHHHHHHHHHhCCCC---CCCC-----CCcChHHHHHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDC-VIWIVVSKDLQLEKIQEIVGKKVGLLD---GDSW-----KNKNSEEKALEIFR   71 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~~-----~~~~~~~~~~~l~~   71 (180)
                      |||+||||||++++++. .++.+|+. ++|+++++.++...++..|++.++...   ....     ...+.+++...+++
T Consensus       158 mGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~  236 (1221)
T 1vt4_I          158 VLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR  236 (1221)
T ss_dssp             STTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHHHHHHHHH
Confidence            79999999999999873 56788986 999999999998888888877543210   0000     11234556677777


Q ss_pred             Hh---CCCcEEEEEeCCCCcccccc---c---------ccccccccccceEeec------CCChhhhHHHHHHH----HH
Q 046006           72 FL---SKKKFVLLLDDKWERVDLNK---G---------LFVCGLVEANKNFKVE------CLSDNDAWELLRQK----LA  126 (180)
Q Consensus        72 ~L---~~k~~LlVlDdv~~~~~l~~---g---------~~~~~~~~~~~~~~l~------~L~~~~a~~Lf~~~----~~  126 (180)
                      .|   .++|+||||||||+.++++.   |         ..++..+.....+.++      +|+.+||++||.+.    ..
T Consensus       237 lL~~l~~KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~e  316 (1221)
T 1vt4_I          237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ  316 (1221)
T ss_dssp             HHHHSTTSSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTT
T ss_pred             HHHhhcCCCEEEEEeCcChHHHHHhhCCCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHH
Confidence            66   68999999999999887755   3         2222222222356777      99999999999987    11


Q ss_pred             HHHHHHcCCChHHHHHHHHHhcCCC-CCCce-------------------------------eecCCCcccCHHHHHHHH
Q 046006          127 QTVAKKCVGLPLALITIGRAIACKR-TPREW-------------------------------SLYPEDYLISKEILIYCW  174 (180)
Q Consensus       127 ~~i~~~c~g~PLal~~~~~~L~~~~-~~~~w-------------------------------s~fp~~~~i~~~~Li~~W  174 (180)
                      ....+.|+|+||||+++|+.|+.+. +.+.|                               |+||+++.|+.+.++.+|
T Consensus       317 eL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW  396 (1221)
T 1vt4_I          317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW  396 (1221)
T ss_dssp             THHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHh
Confidence            2223449999999999999998752 44455                               899999999999999999


Q ss_pred             HhcC
Q 046006          175 IDKF  178 (180)
Q Consensus       175 iaeg  178 (180)
                      +++|
T Consensus       397 ~aeG  400 (1221)
T 1vt4_I          397 FDVI  400 (1221)
T ss_dssp             CSSC
T ss_pred             cCCC
Confidence            9885

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.90  E-value=2.5e-23  Score=173.28  Aligned_cols=172  Identities=22%  Similarity=0.335  Sum_probs=127.1

Q ss_pred             CCCCcHHHHHHHHHcccccc-cCCC-CeEEEEEeCCCCCHHHHH---HHHHHHhCCCC-CCCCCCcChHHHHHHHHHHhC
Q 046006            1 MGGVGKTTLLTHINNKFLVS-STDF-DCVIWIVVSKDLQLEKIQ---EIVGKKVGLLD-GDSWKNKNSEEKALEIFRFLS   74 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~---~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~~L~   74 (180)
                      |||+||||||.+++++. .+ ..+| ++++|++++.. +...++   ..++..++... .......+.+.....++..+.
T Consensus       155 ~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~  232 (591)
T 1z6t_A          155 MAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILML  232 (591)
T ss_dssp             CTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHc
Confidence            79999999999999984 33 5778 58999998765 333333   33445555320 112344567788888888886


Q ss_pred             C--CcEEEEEeCCCCcccccc---c---------ccccccccccceEee---cCCChhhhHHHHHHH----------HHH
Q 046006           75 K--KKFVLLLDDKWERVDLNK---G---------LFVCGLVEANKNFKV---ECLSDNDAWELLRQK----------LAQ  127 (180)
Q Consensus        75 ~--k~~LlVlDdv~~~~~l~~---g---------~~~~~~~~~~~~~~l---~~L~~~~a~~Lf~~~----------~~~  127 (180)
                      +  +++||||||||+...++.   |         ..++..+. ...+++   ++|+.+|+++||...          .+.
T Consensus       233 ~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~  311 (591)
T 1z6t_A          233 RKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAH  311 (591)
T ss_dssp             HTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHH
T ss_pred             cCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHH
Confidence            5  799999999999876665   2         11221211 234554   589999999999987          688


Q ss_pred             HHHHHcCCChHHHHHHHHHhcCCCCCCce------------------------------------------------eec
Q 046006          128 TVAKKCVGLPLALITIGRAIACKRTPREW------------------------------------------------SLY  159 (180)
Q Consensus       128 ~i~~~c~g~PLal~~~~~~L~~~~~~~~w------------------------------------------------s~f  159 (180)
                      +|+++|+|+||||+.+|+.|+.+..  .|                                                |+|
T Consensus       312 ~i~~~~~G~PLal~~~a~~l~~~~~--~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f  389 (591)
T 1z6t_A          312 SIIKECKGSPLVVSLIGALLRDFPN--RWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSIL  389 (591)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSTT--CHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGC
T ss_pred             HHHHHhCCCcHHHHHHHHHHhcCch--hHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHcccc
Confidence            9999999999999999999976431  11                                                899


Q ss_pred             CCCcccCHHHHHHHHHhc
Q 046006          160 PEDYLISKEILIYCWIDK  177 (180)
Q Consensus       160 p~~~~i~~~~Li~~Wiae  177 (180)
                      |+++.|+.+.+..+|.++
T Consensus       390 ~~~~~i~~~~l~~l~~~~  407 (591)
T 1z6t_A          390 QKDVKVPTKVLCILWDME  407 (591)
T ss_dssp             CTTCCEEHHHHHHHHTCC
T ss_pred             CCCCccCHHHHHHHhccC
Confidence            999999999999999764

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=99.10  E-value=5.2e-10  Score=86.74  Aligned_cols=139  Identities=15%  Similarity=0.120  Sum_probs=91.7

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC------CCHHHHHHHHHHHhCC---------------CCCCCCCC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD------LQLEKIQEIVGKKVGL---------------LDGDSWKN   59 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~------~~~~~~~~~i~~~l~~---------------~~~~~~~~   59 (180)
                      ++|+|||+|+++++++.    +    .+|++....      .+...++..+.+.+..               ........
T Consensus        39 ~~G~GKT~Ll~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  110 (350)
T 2qen_A           39 IRRVGKSSLLRAFLNER----P----GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRK  110 (350)
T ss_dssp             CTTSSHHHHHHHHHHHS----S----EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGG
T ss_pred             CCcCCHHHHHHHHHHHc----C----cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeecccc
Confidence            57999999999999873    1    677775433      2566677777666532               00000112


Q ss_pred             cChHHHHHHHHHHhCC-CcEEEEEeCCCCcccc---------c----------c------ccc--cccc----------c
Q 046006           60 KNSEEKALEIFRFLSK-KKFVLLLDDKWERVDL---------N----------K------GLF--VCGL----------V  101 (180)
Q Consensus        60 ~~~~~~~~~l~~~L~~-k~~LlVlDdv~~~~~l---------~----------~------g~~--~~~~----------~  101 (180)
                      .+..+....+.+.... ++.+|||||++....+         .          .      |..  ....          .
T Consensus       111 ~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l  190 (350)
T 2qen_A          111 LSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPL  190 (350)
T ss_dssp             CCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTT
T ss_pred             chHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCcc
Confidence            4556666667666643 4999999999875431         0          0      110  0010          0


Q ss_pred             --cccceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHHHHh
Q 046006          102 --EANKNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIGRAI  147 (180)
Q Consensus       102 --~~~~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~~~L  147 (180)
                        .....+.+.+|+.+|+.+++...           ...++++.|+|+|+++..++..+
T Consensus       191 ~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~l~~~~~~~  249 (350)
T 2qen_A          191 YGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGWLVVFGVEY  249 (350)
T ss_dssp             TTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence              01247899999999999999863           67889999999999999988764

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.03  E-value=3e-09  Score=84.40  Aligned_cols=142  Identities=13%  Similarity=0.160  Sum_probs=94.3

Q ss_pred             CCCCcHHHHHHHHHcccccc--cCCCC-eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC--C
Q 046006            1 MGGVGKTTLLTHINNKFLVS--STDFD-CVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS--K   75 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~--~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~--~   75 (180)
                      ++|+|||+||+.+++.....  ...++ ..+|++.....+...++..++++++.. .. ....+..+....+.+.+.  +
T Consensus        60 ~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~-~~~~~~~~~~~~l~~~l~~~~  137 (412)
T 1w5s_A           60 RVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYP-IQ-VRGAPALDILKALVDNLYVEN  137 (412)
T ss_dssp             CCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCC-CC-CTTCCHHHHHHHHHHHHHHHT
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCC-CC-CCCCCHHHHHHHHHHHHHhcC
Confidence            58999999999999875311  01222 357777767778889999999999764 11 122345666777777775  7


Q ss_pred             CcEEEEEeCCCCccc--------cc---------------cc-ccc-ccc-c---------------cccceEeecCCCh
Q 046006           76 KKFVLLLDDKWERVD--------LN---------------KG-LFV-CGL-V---------------EANKNFKVECLSD  114 (180)
Q Consensus        76 k~~LlVlDdv~~~~~--------l~---------------~g-~~~-~~~-~---------------~~~~~~~l~~L~~  114 (180)
                      ++++|||||++....        +.               .. .-+ +.. .               .....+.+++|+.
T Consensus       138 ~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~  217 (412)
T 1w5s_A          138 HYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKS  217 (412)
T ss_dssp             CEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCH
T ss_pred             CeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCH
Confidence            799999999987421        10               10 000 000 0               0012288999999


Q ss_pred             hhhHHHHHHH-------------HHHHHHHHcC------CChHHHHHHH
Q 046006          115 NDAWELLRQK-------------LAQTVAKKCV------GLPLALITIG  144 (180)
Q Consensus       115 ~~a~~Lf~~~-------------~~~~i~~~c~------g~PLal~~~~  144 (180)
                      ++..++|...             ....|++.|+      |.|..+..+.
T Consensus       218 ~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~  266 (412)
T 1w5s_A          218 RELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVAL  266 (412)
T ss_dssp             HHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence            9999999754             5678899999      9997554443

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=98.98  E-value=7.4e-09  Score=80.31  Aligned_cols=141  Identities=16%  Similarity=0.140  Sum_probs=87.6

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC-----CCHHHHHHHHHHHhCC------------CC-----CCC--
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD-----LQLEKIQEIVGKKVGL------------LD-----GDS--   56 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i~~~l~~------------~~-----~~~--   56 (180)
                      ++|+|||+|++++++...   .   ..+|++....     .+...++..+.+.+..            ..     ...  
T Consensus        38 ~~G~GKT~L~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~  111 (357)
T 2fna_A           38 LRRTGKSSIIKIGINELN---L---PYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNE  111 (357)
T ss_dssp             STTSSHHHHHHHHHHHHT---C---CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSS
T ss_pred             CCCCCHHHHHHHHHHhcC---C---CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceE
Confidence            479999999999998742   1   2578886542     3445555555443310            00     000  


Q ss_pred             C-------CCcChHHHHHHHHHHhCCCcEEEEEeCCCCccc-----c----c-------c------cccc---c------
Q 046006           57 W-------KNKNSEEKALEIFRFLSKKKFVLLLDDKWERVD-----L----N-------K------GLFV---C------   98 (180)
Q Consensus        57 ~-------~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~-----l----~-------~------g~~~---~------   98 (180)
                      .       ...........+.+..+ ++.+|||||++....     +    .       .      |...   .      
T Consensus       112 ~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~  190 (357)
T 2fna_A          112 IKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVE  190 (357)
T ss_dssp             EEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTT
T ss_pred             EEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhcc
Confidence            0       12344555555554433 499999999987432     1    0       0      1110   0      


Q ss_pred             c---cc-cc-cceEeecCCChhhhHHHHHHH---------HHHHHHHHcCCChHHHHHHHHHhc
Q 046006           99 G---LV-EA-NKNFKVECLSDNDAWELLRQK---------LAQTVAKKCVGLPLALITIGRAIA  148 (180)
Q Consensus        99 ~---~~-~~-~~~~~l~~L~~~~a~~Lf~~~---------~~~~i~~~c~g~PLal~~~~~~L~  148 (180)
                      .   .. +. ...+.+.+|+.+++.+++...         ....|++.|+|+|+++..++..+.
T Consensus       191 ~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~i~~~t~G~P~~l~~~~~~~~  254 (357)
T 2fna_A          191 DPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEVVYEKIGGIPGWLTYFGFIYL  254 (357)
T ss_dssp             CTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             CCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcHHHHHHHhCCCHHHHHHHHHHHc
Confidence            0   01 11 257899999999999999875         237899999999999999987764

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.79  E-value=2.7e-08  Score=78.16  Aligned_cols=137  Identities=13%  Similarity=0.006  Sum_probs=91.4

Q ss_pred             CCCCcHHHHHHHHHcccccc---cCC--CCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC
Q 046006            1 MGGVGKTTLLTHINNKFLVS---STD--FDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS   74 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~---~~~--f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~   74 (180)
                      ++|+|||+||+.+++.....   ...  ....+|++..... +...++..++..+... .......+.......+.+.+.
T Consensus        53 ~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~l~~~l~  131 (384)
T 2qby_B           53 LTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGF-SVPKHGINLGEYIDKIKNGTR  131 (384)
T ss_dssp             CTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCS-CCCSSSSCTHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCC-CCCCCCCCHHHHHHHHHHHhc
Confidence            58999999999999874211   011  2356778776666 8888889998888322 112233445677788888888


Q ss_pred             CCcEEEEEeCCCCccc-------ccc------c-------ccc------cccc--cccceEeecCCChhhhHHHHHHH--
Q 046006           75 KKKFVLLLDDKWERVD-------LNK------G-------LFV------CGLV--EANKNFKVECLSDNDAWELLRQK--  124 (180)
Q Consensus        75 ~k~~LlVlDdv~~~~~-------l~~------g-------~~~------~~~~--~~~~~~~l~~L~~~~a~~Lf~~~--  124 (180)
                      .++.+|||||++....       +..      +       ...      ....  .....+.+++++.++..++|...  
T Consensus       132 ~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~  211 (384)
T 2qby_B          132 NIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAE  211 (384)
T ss_dssp             SSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence            7767999999976421       111      1       100      0000  01138899999999999999875  


Q ss_pred             -----------HHHHHHHHcC---CChH
Q 046006          125 -----------LAQTVAKKCV---GLPL  138 (180)
Q Consensus       125 -----------~~~~i~~~c~---g~PL  138 (180)
                                 ..+.+++.|+   |.|.
T Consensus       212 ~~~~~~~~~~~~~~~i~~~~~~~~G~~r  239 (384)
T 2qby_B          212 YGLIKGTYDDEILSYIAAISAKEHGDAR  239 (384)
T ss_dssp             HTSCTTSCCSHHHHHHHHHHHTTCCCHH
T ss_pred             hhcccCCcCHHHHHHHHHHHHhccCCHH
Confidence                       5677888887   8776

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=98.78  E-value=7.5e-08  Score=75.46  Aligned_cols=135  Identities=13%  Similarity=0.140  Sum_probs=91.9

Q ss_pred             CCCCcHHHHHHHHHccccccc---CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC--C
Q 046006            1 MGGVGKTTLLTHINNKFLVSS---TDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS--K   75 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~--~   75 (180)
                      ++|+|||+||+.+++......   ..--..+|++.....+...++..++..++.. . .....+..+....+.+.+.  +
T Consensus        52 ~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~-~-~~~~~~~~~~~~~l~~~l~~~~  129 (387)
T 2v1u_A           52 LTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVR-V-PFTGLSVGEVYERLVKRLSRLR  129 (387)
T ss_dssp             CTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCC-C-CSSCCCHHHHHHHHHHHHTTSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCC-C-CCCCCCHHHHHHHHHHHHhccC
Confidence            589999999999998752110   0112466788778888899999999999754 1 1223446666777777774  5


Q ss_pred             CcEEEEEeCCCCcccc--------------c----c-c---------c--------cccccccccceEeecCCChhhhHH
Q 046006           76 KKFVLLLDDKWERVDL--------------N----K-G---------L--------FVCGLVEANKNFKVECLSDNDAWE  119 (180)
Q Consensus        76 k~~LlVlDdv~~~~~l--------------~----~-g---------~--------~~~~~~~~~~~~~l~~L~~~~a~~  119 (180)
                      ++.+|||||++....-              .    . +         .        .+.+.+ ....+.+++++.++..+
T Consensus       130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~  208 (387)
T 2v1u_A          130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSL-GEVELVFPPYTAPQLRD  208 (387)
T ss_dssp             SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTT-TSEECCBCCCCHHHHHH
T ss_pred             CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcC-CCeEEeeCCCCHHHHHH
Confidence            6899999999864321              0    1 0         0        000011 11468899999999999


Q ss_pred             HHHHH-------------HHHHHHHHcC---CChH
Q 046006          120 LLRQK-------------LAQTVAKKCV---GLPL  138 (180)
Q Consensus       120 Lf~~~-------------~~~~i~~~c~---g~PL  138 (180)
                      ++...             ..+.+++.++   |.|-
T Consensus       209 il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r  243 (387)
T 2v1u_A          209 ILETRAEEAFNPGVLDPDVVPLCAALAAREHGDAR  243 (387)
T ss_dssp             HHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHH
T ss_pred             HHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHH
Confidence            99876             5677888888   9994

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.72  E-value=6.7e-08  Score=75.65  Aligned_cols=138  Identities=12%  Similarity=0.109  Sum_probs=89.2

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC--CCcE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS--KKKF   78 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~--~k~~   78 (180)
                      ++|+||||||+.+++........-...+|++.....+...++..++..++.. .. ....+..+....+.+.+.  +++.
T Consensus        53 ~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~-~~-~~~~~~~~~~~~l~~~l~~~~~~~  130 (386)
T 2qby_A           53 LTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVK-VP-FTGLSIAELYRRLVKAVRDYGSQV  130 (386)
T ss_dssp             CTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCC-CC-SSSCCHHHHHHHHHHHHHTCCSCE
T ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCC-CC-CCCCCHHHHHHHHHHHHhccCCeE
Confidence            5899999999999987531110023467777666667788888888887653 11 123345666667777664  4589


Q ss_pred             EEEEeCCCCccc-------------c---cc-c---------cccccccc-------ccceEeecCCChhhhHHHHHHH-
Q 046006           79 VLLLDDKWERVD-------------L---NK-G---------LFVCGLVE-------ANKNFKVECLSDNDAWELLRQK-  124 (180)
Q Consensus        79 LlVlDdv~~~~~-------------l---~~-g---------~~~~~~~~-------~~~~~~l~~L~~~~a~~Lf~~~-  124 (180)
                      +|||||++....             +   .. +         ........       ....+.+++++.++..+++.+. 
T Consensus       131 vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~  210 (386)
T 2qby_A          131 VIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRA  210 (386)
T ss_dssp             EEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHH
T ss_pred             EEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHH
Confidence            999999976421             1   11 1         00000110       1147899999999999999874 


Q ss_pred             ------------HHHHHHHHcC---CChHHH
Q 046006          125 ------------LAQTVAKKCV---GLPLAL  140 (180)
Q Consensus       125 ------------~~~~i~~~c~---g~PLal  140 (180)
                                  ....+++.++   |.|..+
T Consensus       211 ~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~  241 (386)
T 2qby_A          211 QMAFKPGVLPDNVIKLCAALAAREHGDARRA  241 (386)
T ss_dssp             HHHBCSSCSCHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HhhccCCCCCHHHHHHHHHHHHHhcCCHHHH
Confidence                        5566777777   988743

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.62  E-value=1.1e-06  Score=69.06  Aligned_cols=136  Identities=14%  Similarity=0.136  Sum_probs=90.8

Q ss_pred             CCCCcHHHHHHHHHcccccccCC-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC--CCc
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTD-FDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS--KKK   77 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~--~k~   77 (180)
                      ++|+|||||++.+++...   .. -...++++.+...+...++..++..++.. . .....+..+....+.+.+.  +++
T Consensus        52 ~~G~GKTtl~~~l~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~-~-~~~~~~~~~~~~~l~~~l~~~~~~  126 (389)
T 1fnn_A           52 RPGTGKTVTLRKLWELYK---DKTTARFVYINGFIYRNFTAIIGEIARSLNIP-F-PRRGLSRDEFLALLVEHLRERDLY  126 (389)
T ss_dssp             CTTSSHHHHHHHHHHHHT---TSCCCEEEEEETTTCCSHHHHHHHHHHHTTCC-C-CSSCCCHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCHHHHHHHHHHHHh---hhcCeeEEEEeCccCCCHHHHHHHHHHHhCcc-C-CCCCCCHHHHHHHHHHHHhhcCCe
Confidence            479999999999998852   22 12467777777778889999999998654 1 1223345666666666664  668


Q ss_pred             EEEEEeCCCCccc---------cc-------cc-------cc--cccccc-------ccceEeecCCChhhhHHHHHHH-
Q 046006           78 FVLLLDDKWERVD---------LN-------KG-------LF--VCGLVE-------ANKNFKVECLSDNDAWELLRQK-  124 (180)
Q Consensus        78 ~LlVlDdv~~~~~---------l~-------~g-------~~--~~~~~~-------~~~~~~l~~L~~~~a~~Lf~~~-  124 (180)
                      .+|||||++....         ++       .+       ..  ......       ....+.+++++.++..+++... 
T Consensus       127 ~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~  206 (389)
T 1fnn_A          127 MFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRA  206 (389)
T ss_dssp             EEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHH
T ss_pred             EEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHH
Confidence            9999999987521         10       00       00  000000       1126899999999999998776 


Q ss_pred             ------------HHHHHHHHc---------CCChHHHH
Q 046006          125 ------------LAQTVAKKC---------VGLPLALI  141 (180)
Q Consensus       125 ------------~~~~i~~~c---------~g~PLal~  141 (180)
                                  ....+++.+         .|.|..+.
T Consensus       207 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~  244 (389)
T 1fnn_A          207 KAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAI  244 (389)
T ss_dssp             HHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHH
T ss_pred             HhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHH
Confidence                        466788888         78775443

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=98.55  E-value=5.9e-07  Score=65.44  Aligned_cols=43  Identities=14%  Similarity=0.159  Sum_probs=36.9

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHHHHh
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIGRAI  147 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~~~L  147 (180)
                      ..+++++++.++..+++...           ....|++.|+|.|..+..+...+
T Consensus       178 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~  231 (250)
T 1njg_A          178 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA  231 (250)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            57899999999999999876           57889999999999988776554

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=98.38  E-value=4.9e-06  Score=59.73  Aligned_cols=127  Identities=10%  Similarity=0.056  Sum_probs=71.4

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCC-eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFD-CVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV   79 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L   79 (180)
                      .+|+|||+||+.+++.+.  ...+. ..+.++.+.......+...+....... .                 ...+++.+
T Consensus        46 ~~G~GKT~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------------~~~~~~~v  105 (226)
T 2chg_A           46 PPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGIDVVRHKIKEFARTA-P-----------------IGGAPFKI  105 (226)
T ss_dssp             STTSSHHHHHHHHHHHHH--GGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSC-C-----------------STTCSCEE
T ss_pred             CCCCCHHHHHHHHHHHHh--ccccccceEEeccccccChHHHHHHHHHHhccc-C-----------------CCccCceE
Confidence            479999999999988742  12221 233344433333333322222221110 0                 01246788


Q ss_pred             EEEeCCCCccc-----ccc-------c----------ccccc-cccccceEeecCCChhhhHHHHHHH-----------H
Q 046006           80 LLLDDKWERVD-----LNK-------G----------LFVCG-LVEANKNFKVECLSDNDAWELLRQK-----------L  125 (180)
Q Consensus        80 lVlDdv~~~~~-----l~~-------g----------~~~~~-~~~~~~~~~l~~L~~~~a~~Lf~~~-----------~  125 (180)
                      ||+||++....     +..       +          ..... .......+.+++++.++..+++.+.           .
T Consensus       106 liiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  185 (226)
T 2chg_A          106 IFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDG  185 (226)
T ss_dssp             EEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHH
T ss_pred             EEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence            88998876521     100       0          00000 0011237889999999999998876           5


Q ss_pred             HHHHHHHcCCChHHHHHHHHHh
Q 046006          126 AQTVAKKCVGLPLALITIGRAI  147 (180)
Q Consensus       126 ~~~i~~~c~g~PLal~~~~~~L  147 (180)
                      ...+++.++|.|..+..+...+
T Consensus       186 ~~~l~~~~~g~~r~l~~~l~~~  207 (226)
T 2chg_A          186 LEALIYISGGDFRKAINALQGA  207 (226)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHH
Confidence            7788999999999665444333

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=98.14  E-value=1.1e-05  Score=62.13  Aligned_cols=120  Identities=12%  Similarity=0.078  Sum_probs=73.2

Q ss_pred             CCCCcHHHHHHHHHcccccccCC--C-C-eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh---
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTD--F-D-CVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL---   73 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~--f-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L---   73 (180)
                      ++|+|||++++.+++.+......  . + ..+.++.....+...++..|++++... .  .......+....+.+.+   
T Consensus        53 pPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~-~--~~~~~~~~~L~~~f~~~~~~  129 (318)
T 3te6_A           53 ADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKE-N--LCGDISLEALNFYITNVPKA  129 (318)
T ss_dssp             CCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCC-C----CCCCHHHHHHHHHHSCGG
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCC-C--CCchHHHHHHHHHHHHhhhc
Confidence            48999999999999986422111  1 1 345666666778889999999999543 1  11122233333333333   


Q ss_pred             CCCcEEEEEeCCCCccc---------cc---cc-------------------ccccccccccceEeecCCChhhhHHHHH
Q 046006           74 SKKKFVLLLDDKWERVD---------LN---KG-------------------LFVCGLVEANKNFKVECLSDNDAWELLR  122 (180)
Q Consensus        74 ~~k~~LlVlDdv~~~~~---------l~---~g-------------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~  122 (180)
                      .+++++++||+++...+         |.   .+                   ..+.+++. ...+.+++++.+|-.+++.
T Consensus       130 ~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~  208 (318)
T 3te6_A          130 KKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAH-FTEIKLNKVDKNELQQMII  208 (318)
T ss_dssp             GSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHH
T ss_pred             cCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHH
Confidence            46789999999987631         00   00                   11111221 1468899999999999988


Q ss_pred             HH
Q 046006          123 QK  124 (180)
Q Consensus       123 ~~  124 (180)
                      ++
T Consensus       209 ~R  210 (318)
T 3te6_A          209 TR  210 (318)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.06  E-value=2.3e-05  Score=59.75  Aligned_cols=41  Identities=17%  Similarity=0.079  Sum_probs=32.7

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHH-HHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLA-LITIGR  145 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLa-l~~~~~  145 (180)
                      ..+++.+++.++..+++...           ....|++.|+|.|.. +..+..
T Consensus       159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~  211 (323)
T 1sxj_B          159 AILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQS  211 (323)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             eEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            47899999999999999875           567899999999954 444433

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.79  E-value=0.00025  Score=58.13  Aligned_cols=132  Identities=12%  Similarity=0.033  Sum_probs=70.7

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL   80 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll   80 (180)
                      ++|+|||++|+.+++..     .+ ..+.++.+...+.. .....+...... . ... .-......  .....+++.+|
T Consensus        85 ppGtGKTtla~~la~~l-----~~-~~i~in~s~~~~~~-~~~~~i~~~~~~-~-~~~-~~~~~~~~--~~~~~~~~~vl  152 (516)
T 1sxj_A           85 PPGIGKTTAAHLVAQEL-----GY-DILEQNASDVRSKT-LLNAGVKNALDN-M-SVV-GYFKHNEE--AQNLNGKHFVI  152 (516)
T ss_dssp             STTSSHHHHHHHHHHHT-----TC-EEEEECTTSCCCHH-HHHHTGGGGTTB-C-CST-TTTTC------CCSSTTSEEE
T ss_pred             CCCCCHHHHHHHHHHHc-----CC-CEEEEeCCCcchHH-HHHHHHHHHhcc-c-cHH-HHHhhhhh--hhhccCCCeEE
Confidence            47999999999999884     12 23444444443433 222322222111 0 000 00000000  00123578899


Q ss_pred             EEeCCCCcccccc-------------c------------ccccccccccceEeecCCChhhhHHHHHHH-----------
Q 046006           81 LLDDKWERVDLNK-------------G------------LFVCGLVEANKNFKVECLSDNDAWELLRQK-----------  124 (180)
Q Consensus        81 VlDdv~~~~~l~~-------------g------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~-----------  124 (180)
                      ++|+++....-..             +            ..+.........+.+++++.++..+.+...           
T Consensus       153 iIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~  232 (516)
T 1sxj_A          153 IMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN  232 (516)
T ss_dssp             EECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT
T ss_pred             EEECCCccchhhHHHHHHHHHHHHhcCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence            9999987532111             0            001111112246889999999999888765           


Q ss_pred             HHHHHHHHcCC-ChHHHHHHH
Q 046006          125 LAQTVAKKCVG-LPLALITIG  144 (180)
Q Consensus       125 ~~~~i~~~c~g-~PLal~~~~  144 (180)
                      ....|++.++| ++-++..+.
T Consensus       233 ~l~~la~~s~GdiR~~i~~L~  253 (516)
T 1sxj_A          233 VIDRLIQTTRGDIRQVINLLS  253 (516)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHT
T ss_pred             HHHHHHHHcCCcHHHHHHHHH
Confidence            67889999998 455555443

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.73  E-value=0.00019  Score=57.78  Aligned_cols=121  Identities=22%  Similarity=0.142  Sum_probs=69.1

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL   80 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll   80 (180)
                      .+|+||||||+.+++........ ..+++++.      ..+...+...+...        ..    ..+.+.+..+.-+|
T Consensus       138 p~G~GKTtLa~aia~~l~~~~~~-~~v~~v~~------~~~~~~~~~~~~~~--------~~----~~~~~~~~~~~~vL  198 (440)
T 2z4s_A          138 GVGLGKTHLLQSIGNYVVQNEPD-LRVMYITS------EKFLNDLVDSMKEG--------KL----NEFREKYRKKVDIL  198 (440)
T ss_dssp             SSSSSHHHHHHHHHHHHHHHCCS-SCEEEEEH------HHHHHHHHHHHHTT--------CH----HHHHHHHTTTCSEE
T ss_pred             CCCCCHHHHHHHHHHHHHHhCCC-CeEEEeeH------HHHHHHHHHHHHcc--------cH----HHHHHHhcCCCCEE
Confidence            47999999999999875211001 12345543      23344444444221        11    12333344456688


Q ss_pred             EEeCCCCcccc---------------ccc------------------ccccccccccceEeecCCChhhhHHHHHHH---
Q 046006           81 LLDDKWERVDL---------------NKG------------------LFVCGLVEANKNFKVECLSDNDAWELLRQK---  124 (180)
Q Consensus        81 VlDdv~~~~~l---------------~~g------------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~---  124 (180)
                      +|||++....-               +.|                  ..+.+++.....+.+++++.++-.+++.+.   
T Consensus       199 ~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~  278 (440)
T 2z4s_A          199 LIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEI  278 (440)
T ss_dssp             EEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred             EEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence            88888654320               001                  111111222246789999999999998876   


Q ss_pred             --------HHHHHHHHcCCChHHH
Q 046006          125 --------LAQTVAKKCVGLPLAL  140 (180)
Q Consensus       125 --------~~~~i~~~c~g~PLal  140 (180)
                              ....|++.+.|.+-.+
T Consensus       279 ~~~~i~~e~l~~la~~~~gn~R~l  302 (440)
T 2z4s_A          279 EHGELPEEVLNFVAENVDDNLRRL  302 (440)
T ss_dssp             HTCCCCTTHHHHHHHHCCSCHHHH
T ss_pred             cCCCCCHHHHHHHHHhcCCCHHHH
Confidence                    5677888888877544

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.69  E-value=0.00074  Score=51.52  Aligned_cols=44  Identities=9%  Similarity=0.036  Sum_probs=36.5

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHHHHhc
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIGRAIA  148 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~~~L~  148 (180)
                      ..+.+++++.++..+++...           ....+++.|.|.|-.+..+...+.
T Consensus       161 ~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~  215 (324)
T 1hqc_A          161 IVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVR  215 (324)
T ss_dssp             CEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred             EEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            47899999999999998876           678899999999988877665553

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.59  E-value=0.00044  Score=54.88  Aligned_cols=34  Identities=24%  Similarity=0.202  Sum_probs=26.6

Q ss_pred             cceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006          104 NKNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP  137 (180)
Q Consensus       104 ~~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P  137 (180)
                      +..+.++..+.++-.++|+.+          ....|++.+.|.-
T Consensus       311 D~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~S  354 (405)
T 4b4t_J          311 DRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCS  354 (405)
T ss_dssp             CCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCC
T ss_pred             ceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCC
Confidence            356788888888888888877          5788899988753

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=97.58  E-value=0.00059  Score=53.02  Aligned_cols=40  Identities=15%  Similarity=0.182  Sum_probs=33.4

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIG  144 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~  144 (180)
                      ..+++.+++.++..+++.+.           ....|++.++|.|..+..+.
T Consensus       171 ~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l  221 (373)
T 1jr3_A          171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLT  221 (373)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred             eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHH
Confidence            57889999999999998865           56789999999998776554

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.49  E-value=0.0044  Score=47.61  Aligned_cols=39  Identities=10%  Similarity=0.102  Sum_probs=29.0

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCC-hHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGL-PLALITI  143 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~-PLal~~~  143 (180)
                      ..+.++..+.++-.++|..+           ....|++.+.|. +-.|..+
T Consensus       172 ~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l  222 (322)
T 1xwi_A          172 KRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISII  222 (322)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHH
T ss_pred             eEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence            46778888888888888876           578889998886 4444443

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=97.48  E-value=0.00022  Score=54.37  Aligned_cols=43  Identities=26%  Similarity=0.118  Sum_probs=33.7

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHHHHh
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIGRAI  147 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~~~L  147 (180)
                      ..+.+.+++.++..+++...           ....|++.++|.|..+..+...+
T Consensus       162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~  215 (327)
T 1iqp_A          162 AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAA  215 (327)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            36889999999999988865           67889999999998665444333

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=97.44  E-value=0.003  Score=50.84  Aligned_cols=37  Identities=19%  Similarity=0.247  Sum_probs=28.9

Q ss_pred             ceEeecCCChhhhHHHHHHH------------------HHHHHHHHcCCChHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK------------------LAQTVAKKCVGLPLALI  141 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~------------------~~~~i~~~c~g~PLal~  141 (180)
                      .++.+++++.++-.+++.+.                  ....|++.++|.+-.+.
T Consensus       158 ~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll  212 (447)
T 3pvs_A          158 RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL  212 (447)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred             eEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence            47889999999999988775                  46777888888776544

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.40  E-value=0.00022  Score=50.81  Aligned_cols=66  Identities=29%  Similarity=0.224  Sum_probs=36.8

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL   80 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll   80 (180)
                      .+|+|||+||+.+++...   .....+++++.      .++...+...+..        .+.......+.    +. -+|
T Consensus        62 ~~GtGKT~la~~i~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~--------~~~~~~~~~~~----~~-~~l  119 (202)
T 2w58_A           62 SFGVGKTYLLAAIANELA---KRNVSSLIVYV------PELFRELKHSLQD--------QTMNEKLDYIK----KV-PVL  119 (202)
T ss_dssp             STTSSHHHHHHHHHHHHH---TTTCCEEEEEH------HHHHHHHHHC-----------CCCHHHHHHHH----HS-SEE
T ss_pred             CCCCCHHHHHHHHHHHHH---HcCCeEEEEEh------HHHHHHHHHHhcc--------chHHHHHHHhc----CC-CEE
Confidence            479999999999998853   22234556543      3444444433311        12233333332    22 399


Q ss_pred             EEeCCCCc
Q 046006           81 LLDDKWER   88 (180)
Q Consensus        81 VlDdv~~~   88 (180)
                      ||||++..
T Consensus       120 ilDei~~~  127 (202)
T 2w58_A          120 MLDDLGAE  127 (202)
T ss_dssp             EEEEECCC
T ss_pred             EEcCCCCC
Confidence            99999653

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.39  E-value=0.00086  Score=53.82  Aligned_cols=33  Identities=9%  Similarity=0.188  Sum_probs=25.1

Q ss_pred             ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006          105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP  137 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P  137 (180)
                      ..+.++..+.++-.++|..+          ....+++.+.|+-
T Consensus       345 ~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~s  387 (437)
T 4b4t_L          345 RKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFN  387 (437)
T ss_dssp             EEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCC
T ss_pred             eeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCC
Confidence            46777777888888888776          4678888887753

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.39  E-value=0.0045  Score=45.59  Aligned_cols=40  Identities=15%  Similarity=0.226  Sum_probs=29.3

Q ss_pred             ceEeecCCChhhhHHHHHHH------------HHHHHHHHcCCChH-HHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK------------LAQTVAKKCVGLPL-ALITIG  144 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~------------~~~~i~~~c~g~PL-al~~~~  144 (180)
                      ..+.++..+.++-.+++...            ....+++.+.|.+- .+..+.
T Consensus       170 ~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~  222 (262)
T 2qz4_A          170 RHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANIC  222 (262)
T ss_dssp             EEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred             eEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence            46778899999999998876            24678888888654 554444

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.37  E-value=0.0016  Score=48.75  Aligned_cols=39  Identities=21%  Similarity=0.277  Sum_probs=29.6

Q ss_pred             ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCC-ChHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVG-LPLALITI  143 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g-~PLal~~~  143 (180)
                      ..+.++.++.++..++|...          ....++..+.| .|-.+..+
T Consensus       181 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l  230 (285)
T 3h4m_A          181 RIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAI  230 (285)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHH
T ss_pred             eEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHH
Confidence            46889999999999999887          46788888877 45444433

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.37  E-value=0.0009  Score=53.96  Aligned_cols=34  Identities=6%  Similarity=0.133  Sum_probs=26.0

Q ss_pred             cceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006          104 NKNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP  137 (180)
Q Consensus       104 ~~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P  137 (180)
                      +..+.++..+.++-.++|+.+          ....|++.|.|.-
T Consensus       372 D~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfS  415 (467)
T 4b4t_H          372 DRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNST  415 (467)
T ss_dssp             CEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCC
T ss_pred             cEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCC
Confidence            356778878888888888877          4678888888753

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.28  E-value=0.00064  Score=54.54  Aligned_cols=32  Identities=13%  Similarity=0.152  Sum_probs=24.9

Q ss_pred             ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCC
Q 046006          105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGL  136 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~  136 (180)
                      ..+.++..+.++-.++|..+          ....|++.+.|+
T Consensus       345 ~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~  386 (434)
T 4b4t_M          345 RKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEF  386 (434)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSC
T ss_pred             EEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCC
Confidence            56778878888888888766          467888888775

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.28  E-value=0.0015  Score=50.10  Aligned_cols=32  Identities=6%  Similarity=0.172  Sum_probs=24.2

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPL  138 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PL  138 (180)
                      ..+++++ +.++-.+++...           ....|++.+ |.+-
T Consensus       160 ~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r  202 (324)
T 1l8q_A          160 ILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVR  202 (324)
T ss_dssp             EEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHH
T ss_pred             eEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHH
Confidence            4688999 999999988876           456677777 6543

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.28  E-value=0.00018  Score=50.21  Aligned_cols=17  Identities=29%  Similarity=0.575  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||+||+.+++..
T Consensus        51 ~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           51 EPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CTTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            47999999999998875

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.27  E-value=0.0014  Score=52.47  Aligned_cols=32  Identities=13%  Similarity=0.020  Sum_probs=24.4

Q ss_pred             ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCC
Q 046006          105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGL  136 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~  136 (180)
                      ..+.++..+.++-.++|..+          ....|++.+.|+
T Consensus       346 ~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~Gf  387 (437)
T 4b4t_I          346 RKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDL  387 (437)
T ss_dssp             EEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSC
T ss_pred             EEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCC
Confidence            45677777888888888776          467888888775

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.25  E-value=0.001  Score=51.72  Aligned_cols=37  Identities=14%  Similarity=0.056  Sum_probs=29.5

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcC-CChHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCV-GLPLALI  141 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~-g~PLal~  141 (180)
                      ..+.+++++.++..+++...           ....|++.+. |.|-.+.
T Consensus       252 ~~i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~  300 (368)
T 3uk6_A          252 LIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAI  300 (368)
T ss_dssp             EEEEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHH
T ss_pred             cEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHH
Confidence            35789999999999999866           6778888887 7776543

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.23  E-value=0.0012  Score=47.29  Aligned_cols=81  Identities=14%  Similarity=0.069  Sum_probs=46.4

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---------CCCCCCcChHHHHHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLD---------GDSWKNKNSEEKALEIFR   71 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~~~~~~~~~~~~~l~~   71 (180)
                      .+|+||||||..++. ..     -..++|++.....+...+.. +.+.++...         .......+..+....++.
T Consensus        28 ~~GsGKTtl~~~l~~-~~-----~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (220)
T 2cvh_A           28 PYASGKTTLALQTGL-LS-----GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKK  100 (220)
T ss_dssp             STTSSHHHHHHHHHH-HH-----CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHH-Hc-----CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHHHHHHHHH
Confidence            379999999999987 11     13678887766555554433 333332210         000111122334555555


Q ss_pred             HhCCCcEEEEEeCCCCc
Q 046006           72 FLSKKKFVLLLDDKWER   88 (180)
Q Consensus        72 ~L~~k~~LlVlDdv~~~   88 (180)
                      .+..+.-++|+|.....
T Consensus       101 l~~~~~~lliiD~~~~~  117 (220)
T 2cvh_A          101 TVDSNFALVVVDSITAH  117 (220)
T ss_dssp             HCCTTEEEEEEECCCCC
T ss_pred             HhhcCCCEEEEcCcHHH
Confidence            55446789999997654

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=97.13  E-value=0.0038  Score=48.18  Aligned_cols=36  Identities=14%  Similarity=0.054  Sum_probs=30.5

Q ss_pred             ceEeecCCChhhhHHHHHHH------HHHHHHHHcCCChHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK------LAQTVAKKCVGLPLAL  140 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~------~~~~i~~~c~g~PLal  140 (180)
                      ..+++++++.++..+.+.+.      ....+++.++|.|..+
T Consensus       160 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~~s~G~~r~a  201 (334)
T 1a5t_A          160 RLHYLAPPPEQYAVTWLSREVTMSQDALLAALRLSAGSPGAA  201 (334)
T ss_dssp             EEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHH
T ss_pred             eeeeCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHH
Confidence            47889999999999998887      5678999999998655

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.12  E-value=0.00054  Score=49.66  Aligned_cols=40  Identities=8%  Similarity=0.198  Sum_probs=32.7

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIG  144 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~  144 (180)
                      ..+.+++++.++..+++...           ....+++.++|.+-.+..+.
T Consensus       167 ~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l  217 (242)
T 3bos_A          167 LTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVL  217 (242)
T ss_dssp             EEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             ceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHH
Confidence            57899999999999999876           67788899999887665443

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=97.11  E-value=0.0014  Score=49.57  Aligned_cols=40  Identities=10%  Similarity=-0.086  Sum_probs=32.0

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIG  144 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~  144 (180)
                      ..+.+.+++.++..+++...           ....+++.++|.|..+....
T Consensus       154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l  204 (319)
T 2chq_A          154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINAL  204 (319)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred             eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            47889999999999988865           67788899999987654433

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.11  E-value=0.0053  Score=47.84  Aligned_cols=39  Identities=5%  Similarity=-0.014  Sum_probs=28.8

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCC-ChHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVG-LPLALITI  143 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g-~PLal~~~  143 (180)
                      ..+.++..+.++-.++|..+           ....|++.+.| .|-.|..+
T Consensus       210 ~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l  260 (355)
T 2qp9_X          210 RRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVV  260 (355)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             EEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence            46678888888888888876           57889999988 45444433

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.09  E-value=0.00019  Score=55.33  Aligned_cols=62  Identities=19%  Similarity=0.231  Sum_probs=41.0

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEe--CCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVV--SKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKF   78 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~   78 (180)
                      ++|+|||+||.+++.. .   +  ..++|++.  .+.             +..-      ..+.++....+.+.+...+ 
T Consensus       131 pPGsGKTtLAlqlA~~-~---G--~~VlyIs~~~eE~-------------v~~~------~~~le~~l~~i~~~l~~~~-  184 (331)
T 2vhj_A          131 KGNSGKTPLVHALGEA-L---G--GKDKYATVRFGEP-------------LSGY------NTDFNVFVDDIARAMLQHR-  184 (331)
T ss_dssp             SCSSSHHHHHHHHHHH-H---H--TTSCCEEEEBSCS-------------STTC------BCCHHHHHHHHHHHHHHCS-
T ss_pred             CCCCCHHHHHHHHHHh-C---C--CCEEEEEecchhh-------------hhhh------hcCHHHHHHHHHHHHhhCC-
Confidence            5899999999999875 1   1  12445655  322             1111      1456677777777776666 


Q ss_pred             EEEEeCCCCc
Q 046006           79 VLLLDDKWER   88 (180)
Q Consensus        79 LlVlDdv~~~   88 (180)
                      ++|+|++...
T Consensus       185 LLVIDsI~aL  194 (331)
T 2vhj_A          185 VIVIDSLKNV  194 (331)
T ss_dssp             EEEEECCTTT
T ss_pred             EEEEeccccc
Confidence            9999999875

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.06  E-value=0.00044  Score=48.37  Aligned_cols=66  Identities=17%  Similarity=0.079  Sum_probs=36.6

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL   80 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll   80 (180)
                      ++|+||||||+.+++... ....+. ++++      +..++...+.......    .    .......    +. +.-+|
T Consensus        46 ~~G~GKTtL~~~i~~~~~-~~~g~~-~~~~------~~~~~~~~~~~~~~~~----~----~~~~~~~----~~-~~~ll  104 (180)
T 3ec2_A           46 SPGVGKTHLAVATLKAIY-EKKGIR-GYFF------DTKDLIFRLKHLMDEG----K----DTKFLKT----VL-NSPVL  104 (180)
T ss_dssp             SSSSSHHHHHHHHHHHHH-HHSCCC-CCEE------EHHHHHHHHHHHHHHT----C----CSHHHHH----HH-TCSEE
T ss_pred             CCCCCHHHHHHHHHHHHH-HHcCCe-EEEE------EHHHHHHHHHHHhcCc----h----HHHHHHH----hc-CCCEE
Confidence            479999999999998752 112222 2333      3455555555444221    0    0122222    22 45689


Q ss_pred             EEeCCCC
Q 046006           81 LLDDKWE   87 (180)
Q Consensus        81 VlDdv~~   87 (180)
                      ||||+..
T Consensus       105 ilDE~~~  111 (180)
T 3ec2_A          105 VLDDLGS  111 (180)
T ss_dssp             EEETCSS
T ss_pred             EEeCCCC
Confidence            9999974

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.95  E-value=0.0099  Score=47.73  Aligned_cols=37  Identities=14%  Similarity=0.109  Sum_probs=27.2

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCC-hHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGL-PLALI  141 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~-PLal~  141 (180)
                      ..+.++..+.++-.++|..+           ....|++.+.|. +-.|.
T Consensus       294 ~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~  342 (444)
T 2zan_A          294 KRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADIS  342 (444)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHH
T ss_pred             eEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHH
Confidence            45677788888888888776           577889999884 43443

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.94  E-value=0.0039  Score=53.68  Aligned_cols=33  Identities=15%  Similarity=0.183  Sum_probs=25.9

Q ss_pred             ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006          105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP  137 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P  137 (180)
                      ..++++..+.++-.++|..+          ....|++.+.|.-
T Consensus       365 ~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~Gfs  407 (806)
T 3cf2_A          365 REVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHV  407 (806)
T ss_dssp             EEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCC
T ss_pred             eEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCC
Confidence            56788888888888888876          4778888888764

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.93  E-value=0.0092  Score=46.44  Aligned_cols=41  Identities=5%  Similarity=0.048  Sum_probs=30.0

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCC-ChHHHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVG-LPLALITIGR  145 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g-~PLal~~~~~  145 (180)
                      ..+.++..+.++..+++...           ....|++.+.| .|-.|..+..
T Consensus       244 ~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~  296 (357)
T 3d8b_A          244 KRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCR  296 (357)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             eEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            35678888888888887765           56788888888 5666665544

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.92  E-value=0.0028  Score=49.52  Aligned_cols=80  Identities=15%  Similarity=0.048  Sum_probs=50.7

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCCcChHHHHHHHHHHhC-CCc
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD--SWKNKNSEEKALEIFRFLS-KKK   77 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~~L~-~k~   77 (180)
                      .+|+||||||.+++.... .  .-..++|++....++..     .++.++.....  .....+.++....+...++ .+.
T Consensus        69 ppGsGKSTLal~la~~~~-~--~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~  140 (356)
T 3hr8_A           69 QESSGKTTLALHAIAEAQ-K--MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVV  140 (356)
T ss_dssp             STTSSHHHHHHHHHHHHH-H--TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCC
T ss_pred             CCCCCHHHHHHHHHHHHH-h--cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCC
Confidence            479999999999988742 1  11246788776666554     45556543111  1123456666666666554 556


Q ss_pred             EEEEEeCCCCc
Q 046006           78 FVLLLDDKWER   88 (180)
Q Consensus        78 ~LlVlDdv~~~   88 (180)
                      -++|+|.+...
T Consensus       141 dlvVIDSi~~l  151 (356)
T 3hr8_A          141 DLIVVDSVAAL  151 (356)
T ss_dssp             SEEEEECTTTC
T ss_pred             CeEEehHhhhh
Confidence            79999998655

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.90  E-value=0.0028  Score=46.11  Aligned_cols=86  Identities=14%  Similarity=0.144  Sum_probs=48.6

Q ss_pred             CCCCcHHHHHHHHHcccccccC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---C---CCCCcChHH---HHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSST----DFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDG---D---SWKNKNSEE---KAL   67 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~---~~~~~~~~~---~~~   67 (180)
                      .+|+|||||++.++.... ...    .-..++|++....++...+. .+++.++....   .   .....+.++   ...
T Consensus        32 ~~GsGKTtl~~~l~~~~~-~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (243)
T 1n0w_A           32 EFRTGKTQICHTLAVTCQ-LPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTDHQTQLLY  109 (243)
T ss_dssp             CTTSSHHHHHHHHHHHTT-SCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHh-CchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHHHHHHHHH
Confidence            479999999999987521 111    13578888876655554443 34455544300   0   001122333   233


Q ss_pred             HHHHHhC-CCcEEEEEeCCCCc
Q 046006           68 EIFRFLS-KKKFVLLLDDKWER   88 (180)
Q Consensus        68 ~l~~~L~-~k~~LlVlDdv~~~   88 (180)
                      .+.+.+. .+.-++|+|++...
T Consensus       110 ~~~~~~~~~~~~lliiD~~~~~  131 (243)
T 1n0w_A          110 QASAMMVESRYALLIVDSATAL  131 (243)
T ss_dssp             HHHHHHHHSCEEEEEEETSSGG
T ss_pred             HHHHHHhcCCceEEEEeCchHH
Confidence            3555553 57889999998654

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.88  E-value=0.0055  Score=46.94  Aligned_cols=40  Identities=5%  Similarity=-0.041  Sum_probs=29.0

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCC-ChHHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVG-LPLALITIG  144 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g-~PLal~~~~  144 (180)
                      ..+.++..+.++-.++|..+           ....|++.+.| .+-.|..+.
T Consensus       177 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~  228 (322)
T 3eie_A          177 RRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVV  228 (322)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred             eEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence            45678888889989998877           57788888887 454444433

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.86  E-value=0.0029  Score=48.68  Aligned_cols=87  Identities=16%  Similarity=0.189  Sum_probs=51.3

Q ss_pred             CCCCcHHHHHHHHHcccccccC---CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCCCCcChH---HHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSST---DFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDG------DSWKNKNSE---EKALE   68 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~---~~~~~   68 (180)
                      .+|+|||+||.+++........   .-..++|++....++..++.. +++.++....      ......+.+   +....
T Consensus       115 ~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~  193 (324)
T 2z43_A          115 EFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTDHQIAIVDD  193 (324)
T ss_dssp             STTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHH
T ss_pred             CCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHHHHHHHHHH
Confidence            3799999999999876311100   024678998887777666553 4555654310      001122233   34445


Q ss_pred             HHHHhC--CCcEEEEEeCCCCc
Q 046006           69 IFRFLS--KKKFVLLLDDKWER   88 (180)
Q Consensus        69 l~~~L~--~k~~LlVlDdv~~~   88 (180)
                      +...++  .+.-++|+|.+...
T Consensus       194 l~~~~~~~~~~~lvVIDsl~~l  215 (324)
T 2z43_A          194 LQELVSKDPSIKLIVVDSVTSH  215 (324)
T ss_dssp             HHHHHHHCTTEEEEEETTTTHH
T ss_pred             HHHHHHhccCCCEEEEeCcHHH
Confidence            555553  56789999998654

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.85  E-value=0.0015  Score=45.24  Aligned_cols=17  Identities=35%  Similarity=0.497  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||+||+.+++..
T Consensus        51 ~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           51 DPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             CGGGCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            47999999999998875

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.82  E-value=0.0058  Score=47.04  Aligned_cols=81  Identities=7%  Similarity=0.023  Sum_probs=51.0

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CCCcChHHH-HHHHHHH--h-
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDS---WKNKNSEEK-ALEIFRF--L-   73 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~-~~~l~~~--L-   73 (180)
                      .+|+||||||.+++.... ....-..++|++....++..     .++.++.+ ...   ..+.+.++. ...+...  + 
T Consensus        36 ~pGsGKTtL~Lq~~~~~~-~~g~g~~vlyId~E~s~~~~-----ra~~lGvd-~d~llv~~~~~~E~~~l~i~~~l~~i~  108 (333)
T 3io5_A           36 PSKSFKSNFGLTMVSSYM-RQYPDAVCLFYDSEFGITPA-----YLRSMGVD-PERVIHTPVQSLEQLRIDMVNQLDAIE  108 (333)
T ss_dssp             SSSSSHHHHHHHHHHHHH-HHCTTCEEEEEESSCCCCHH-----HHHHTTCC-GGGEEEEECSBHHHHHHHHHHHHHTCC
T ss_pred             CCCCCHHHHHHHHHHHHH-hcCCCceEEEEeccchhhHH-----HHHHhCCC-HHHeEEEcCCCHHHHHHHHHHHHHHhh
Confidence            479999999999987742 11112457888877777654     26777765 211   123455555 4433332  3 


Q ss_pred             CCCcEEEEEeCCCCc
Q 046006           74 SKKKFVLLLDDKWER   88 (180)
Q Consensus        74 ~~k~~LlVlDdv~~~   88 (180)
                      +++.-++|+|-+...
T Consensus       109 ~~~~~lvVIDSI~aL  123 (333)
T 3io5_A          109 RGEKVVVFIDSLGNL  123 (333)
T ss_dssp             TTCCEEEEEECSTTC
T ss_pred             ccCceEEEEeccccc
Confidence            467899999998765

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.81  E-value=0.0071  Score=46.90  Aligned_cols=86  Identities=10%  Similarity=0.085  Sum_probs=50.0

Q ss_pred             CCCCcHHHHHHHHHcccccccC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------CCCCCcChHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSST----DFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDG---------DSWKNKNSEEKAL   67 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~~~~~~~~   67 (180)
                      .+|+|||+||.+++.... ...    .-..++|++....++...+.. +++.++....         .........+...
T Consensus       130 ~~GsGKTtla~~la~~~~-~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~e~~~~ll~  207 (343)
T 1v5w_A          130 EFRTGKTQLSHTLCVTAQ-LPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTSEHQMELLD  207 (343)
T ss_dssp             CTTCTHHHHHHHHHHHTT-SCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSTTHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHh-cccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCHHHHHHHHH
Confidence            379999999999987621 111    234678998877777666543 4455544300         0011112223344


Q ss_pred             HHHHHhC---CCcEEEEEeCCCCc
Q 046006           68 EIFRFLS---KKKFVLLLDDKWER   88 (180)
Q Consensus        68 ~l~~~L~---~k~~LlVlDdv~~~   88 (180)
                      .+.+.++   .+.-++|+|.+...
T Consensus       208 ~l~~~i~~~~~~~~lvVIDsl~~l  231 (343)
T 1v5w_A          208 YVAAKFHEEAGIFKLLIIDSIMAL  231 (343)
T ss_dssp             HHHHHHHHSCSSEEEEEEETSGGG
T ss_pred             HHHHHHHhcCCCccEEEEechHHH
Confidence            4455553   56779999998654

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.75  E-value=0.00076  Score=51.20  Aligned_cols=17  Identities=24%  Similarity=0.190  Sum_probs=15.5

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||+||+.+++..
T Consensus        44 ppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           44 GKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CTTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999999985

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.74  E-value=0.029  Score=44.09  Aligned_cols=41  Identities=17%  Similarity=0.174  Sum_probs=30.1

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChH-HHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPL-ALITIGR  145 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PL-al~~~~~  145 (180)
                      ..+.++..+.++-.+++...           ....|++.+.|..- ++..+..
T Consensus       275 ~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~  327 (389)
T 3vfd_A          275 KRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAK  327 (389)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             eEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            45778888999998888766           57788888888543 5655543

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.64  E-value=0.0075  Score=47.30  Aligned_cols=80  Identities=16%  Similarity=0.074  Sum_probs=51.0

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCCcChHHHHHHHHHHhC-CCc
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD--SWKNKNSEEKALEIFRFLS-KKK   77 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~~L~-~k~   77 (180)
                      .+|+||||||.+++.... .  .-..++|++....++..     .++.++.+...  .....+.++....+....+ .+.
T Consensus        82 ~pGsGKTtlal~la~~~~-~--~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~  153 (366)
T 1xp8_A           82 PESGGKTTLALAIVAQAQ-K--AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELLVRSGAI  153 (366)
T ss_dssp             STTSSHHHHHHHHHHHHH-H--TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCC
T ss_pred             CCCCChHHHHHHHHHHHH-H--CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCC
Confidence            379999999999987742 1  22368899887766544     24555543110  0123456677777766665 456


Q ss_pred             EEEEEeCCCCc
Q 046006           78 FVLLLDDKWER   88 (180)
Q Consensus        78 ~LlVlDdv~~~   88 (180)
                      -++|+|.+...
T Consensus       154 ~lVVIDsl~~l  164 (366)
T 1xp8_A          154 DVVVVDSVAAL  164 (366)
T ss_dssp             SEEEEECTTTC
T ss_pred             CEEEEeChHHh
Confidence            79999998654

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.62  E-value=0.0076  Score=46.92  Aligned_cols=80  Identities=16%  Similarity=0.086  Sum_probs=49.6

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCCcChHHHHHHHHHHhC-CCc
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD--SWKNKNSEEKALEIFRFLS-KKK   77 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~~L~-~k~   77 (180)
                      .+|+||||||.+++....   ..-..++|++....++..     .++.++.....  .....+.++....+....+ .+.
T Consensus        69 ~pGsGKTtLal~la~~~~---~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~  140 (349)
T 2zr9_A           69 PESSGKTTVALHAVANAQ---AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAL  140 (349)
T ss_dssp             STTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCC
T ss_pred             CCCCCHHHHHHHHHHHHH---hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCC
Confidence            379999999999987642   112357888877666543     24556543110  0123356666666655554 457


Q ss_pred             EEEEEeCCCCc
Q 046006           78 FVLLLDDKWER   88 (180)
Q Consensus        78 ~LlVlDdv~~~   88 (180)
                      -++|+|.+...
T Consensus       141 ~lIVIDsl~~l  151 (349)
T 2zr9_A          141 DIIVIDSVAAL  151 (349)
T ss_dssp             SEEEEECGGGC
T ss_pred             CEEEEcChHhh
Confidence            79999998654

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.60  E-value=0.0043  Score=47.51  Aligned_cols=87  Identities=15%  Similarity=0.153  Sum_probs=50.5

Q ss_pred             CCCCcHHHHHHHHHccccccc---------CCC----CeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCCCCcC
Q 046006            1 MGGVGKTTLLTHINNKFLVSS---------TDF----DCVIWIVVSKDLQLEKIQEIVGKKVGLLDG------DSWKNKN   61 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~---------~~f----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~   61 (180)
                      .+|+|||+||.+++.......         ..-    ..++|++....++..++.. +++.++.+..      ......+
T Consensus       106 ~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~  184 (322)
T 2i1q_A          106 VFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDNTFVARAYN  184 (322)
T ss_dssp             STTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHTEEEEECSS
T ss_pred             CCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcCEEEEeCCC
Confidence            379999999999986521000         111    4678888887777776654 3455654310      0011223


Q ss_pred             hH---HHHHHHHHHhC--CCcEEEEEeCCCCc
Q 046006           62 SE---EKALEIFRFLS--KKKFVLLLDDKWER   88 (180)
Q Consensus        62 ~~---~~~~~l~~~L~--~k~~LlVlDdv~~~   88 (180)
                      .+   +....+.+.++  .+.-++|+|.+...
T Consensus       185 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l  216 (322)
T 2i1q_A          185 SDMQMLFAEKIEDLIQEGNNIKLVVIDSLTST  216 (322)
T ss_dssp             HHHHHHHHHTHHHHHHTTCEEEEEEEECSSHH
T ss_pred             HHHHHHHHHHHHHHHhhccCccEEEEECcHHH
Confidence            33   34445555554  45679999998644

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.55  E-value=0.006  Score=46.86  Aligned_cols=38  Identities=21%  Similarity=0.239  Sum_probs=31.2

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALIT  142 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~  142 (180)
                      ..+.+.+++.++..+.+.+.           ....|++.++|.|-.+..
T Consensus       185 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~  233 (353)
T 1sxj_D          185 SKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGIT  233 (353)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHH
T ss_pred             ceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence            36789999999999888875           678899999999876543

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.54  E-value=0.00048  Score=50.37  Aligned_cols=80  Identities=15%  Similarity=-0.034  Sum_probs=43.0

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCC-cEEE
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKK-KFVL   80 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k-~~Ll   80 (180)
                      +|+||||++..++++.. . ... .++.++.....  . ....+++.++.. .......+..+....+.+.+.+. .-++
T Consensus        21 mGsGKTT~ll~~~~r~~-~-~g~-kVli~~~~~d~--r-~~~~i~srlG~~-~~~~~~~~~~~i~~~i~~~~~~~~~dvV   93 (223)
T 2b8t_A           21 MFAGKTAELIRRLHRLE-Y-ADV-KYLVFKPKIDT--R-SIRNIQSRTGTS-LPSVEVESAPEILNYIMSNSFNDETKVI   93 (223)
T ss_dssp             TTSCHHHHHHHHHHHHH-H-TTC-CEEEEEECCCG--G-GCSSCCCCCCCS-SCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred             CCCcHHHHHHHHHHHHH-h-cCC-EEEEEEeccCc--h-HHHHHHHhcCCC-ccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence            59999999999988853 1 222 23444322211  1 112334444433 11222234455555666555444 4499


Q ss_pred             EEeCCCCc
Q 046006           81 LLDDKWER   88 (180)
Q Consensus        81 VlDdv~~~   88 (180)
                      |+|.+...
T Consensus        94 iIDEaQ~l  101 (223)
T 2b8t_A           94 GIDEVQFF  101 (223)
T ss_dssp             EECSGGGS
T ss_pred             EEecCccC
Confidence            99998753

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.54  E-value=0.0065  Score=45.73  Aligned_cols=40  Identities=20%  Similarity=0.132  Sum_probs=28.2

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChH-HHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPL-ALITIG  144 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PL-al~~~~  144 (180)
                      ..+.++..+.++..+++...           ....+++.+.|.+- ++..+.
T Consensus       182 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~  233 (297)
T 3b9p_A          182 KRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALA  233 (297)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             eEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence            35667777777877877665           57788899988775 554443

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.53  E-value=0.023  Score=43.50  Aligned_cols=39  Identities=21%  Similarity=0.349  Sum_probs=31.6

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITI  143 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~  143 (180)
                      ..+.+++++.++..+++.+.           ....+++.+.|.|-.+..+
T Consensus       177 ~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~  226 (338)
T 3pfi_A          177 MQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRL  226 (338)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHH
T ss_pred             EEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHH
Confidence            57899999999999998876           5778888999998655443

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.53  E-value=0.0044  Score=45.72  Aligned_cols=37  Identities=16%  Similarity=0.101  Sum_probs=24.5

Q ss_pred             ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCC-ChHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVG-LPLALI  141 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g-~PLal~  141 (180)
                      ..+.++..+.++-.+++..+          ....++..+.| .+--+.
T Consensus       175 ~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~  222 (257)
T 1lv7_A          175 RQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLA  222 (257)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH
T ss_pred             eEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHH
Confidence            45667777777777777765          35566777777 565444

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.50  E-value=0.0062  Score=46.22  Aligned_cols=34  Identities=12%  Similarity=0.098  Sum_probs=25.7

Q ss_pred             ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCChH
Q 046006          105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLPL  138 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~PL  138 (180)
                      ..+.++..+.++-.+++...          ....++..+.|.|-
T Consensus       179 ~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg  222 (301)
T 3cf0_A          179 QLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSG  222 (301)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCH
T ss_pred             eEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCH
Confidence            56788888999888888776          35667777777654

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.49  E-value=0.018  Score=46.83  Aligned_cols=39  Identities=15%  Similarity=0.200  Sum_probs=29.7

Q ss_pred             ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCC-hHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGL-PLALITI  143 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~-PLal~~~  143 (180)
                      ..+.++..+.++-.++|..+          ...++++.+.|. +-.+..+
T Consensus       365 ~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L  414 (489)
T 3hu3_A          365 REVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAAL  414 (489)
T ss_dssp             EEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHH
T ss_pred             eEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHH
Confidence            46888999999999999887          457888888774 5545444

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.46  E-value=0.0085  Score=46.80  Aligned_cols=79  Identities=18%  Similarity=0.070  Sum_probs=47.9

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CCCcChHHHHHHHHHHh-CCC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDS---WKNKNSEEKALEIFRFL-SKK   76 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~l~~~L-~~k   76 (180)
                      .+|+||||||.+++.... .  .-..++|++....++...     ++.++.. ...   ....+.++....++... ..+
T Consensus        71 ~pGsGKTtLal~la~~~~-~--~g~~vlyid~E~s~~~~~-----a~~~g~~-~~~l~i~~~~~~e~~~~~~~~l~~~~~  141 (356)
T 1u94_A           71 PESSGKTTLTLQVIAAAQ-R--EGKTCAFIDAEHALDPIY-----ARKLGVD-IDNLLCSQPDTGEQALEICDALARSGA  141 (356)
T ss_dssp             STTSSHHHHHHHHHHHHH-H--TTCCEEEEESSCCCCHHH-----HHHTTCC-GGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHH-H--CCCeEEEEeCCCCccHHH-----HHHcCCC-hhheeeeCCCCHHHHHHHHHHHHhccC
Confidence            379999999999987742 1  223578888876666432     4555543 111   11234555555554444 345


Q ss_pred             cEEEEEeCCCCc
Q 046006           77 KFVLLLDDKWER   88 (180)
Q Consensus        77 ~~LlVlDdv~~~   88 (180)
                      .-++|+|.+...
T Consensus       142 ~~lVVIDsl~~l  153 (356)
T 1u94_A          142 VDVIVVDSVAAL  153 (356)
T ss_dssp             CSEEEEECGGGC
T ss_pred             CCEEEEcCHHHh
Confidence            669999997544

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.44  E-value=0.0028  Score=50.73  Aligned_cols=17  Identities=35%  Similarity=0.469  Sum_probs=15.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +||+|||.||+++++..
T Consensus       214 PPGtGKT~lakAiA~~~  230 (428)
T 4b4t_K          214 PPGTGKTMLVKAVANST  230 (428)
T ss_dssp             CTTTTHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999999984

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.30  E-value=0.0045  Score=46.79  Aligned_cols=20  Identities=15%  Similarity=0.290  Sum_probs=17.5

Q ss_pred             ceEeecCCChhhhHHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK  124 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~  124 (180)
                      ..+.+++++.++-.+++...
T Consensus       197 ~~i~~~~~~~~~~~~il~~~  216 (309)
T 3syl_A          197 HHIEFPDYSDEELFEIAGHM  216 (309)
T ss_dssp             EEEEECCCCHHHHHHHHHHH
T ss_pred             eEEEcCCcCHHHHHHHHHHH
Confidence            57889999999999998776

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.29  E-value=0.0029  Score=47.16  Aligned_cols=31  Identities=19%  Similarity=0.246  Sum_probs=21.8

Q ss_pred             ceEeecCCCh-hhhHHHHHHH------HHHHHHHHcCC
Q 046006          105 KNFKVECLSD-NDAWELLRQK------LAQTVAKKCVG  135 (180)
Q Consensus       105 ~~~~l~~L~~-~~a~~Lf~~~------~~~~i~~~c~g  135 (180)
                      ..+.+++++. ++-.+++.+.      ....+++.+.|
T Consensus       191 ~~i~~p~l~~r~~i~~i~~~~~~~~~~~~~~l~~~~~g  228 (272)
T 1d2n_A          191 TTIHVPNIATGEQLLEALELLGNFKDKERTTIAQQVKG  228 (272)
T ss_dssp             EEEECCCEEEHHHHHHHHHHHTCSCHHHHHHHHHHHTT
T ss_pred             eEEcCCCccHHHHHHHHHHhcCCCCHHHHHHHHHHhcC
Confidence            4678888888 5555665554      67778888877

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.16  E-value=0.024  Score=43.62  Aligned_cols=36  Identities=8%  Similarity=0.068  Sum_probs=27.5

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL  140 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal  140 (180)
                      ..+.+.+++.++..+.+.+.           ....+++.++|.+--+
T Consensus       162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~  208 (340)
T 1sxj_C          162 TRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRV  208 (340)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHH
T ss_pred             eeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence            36788899999888877754           5677888888877643

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.09  E-value=0.016  Score=43.45  Aligned_cols=17  Identities=35%  Similarity=0.407  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||||+.++...
T Consensus        52 p~GtGKTtLakala~~~   68 (274)
T 2x8a_A           52 PPGCGKTLLAKAVANES   68 (274)
T ss_dssp             STTSCHHHHHHHHHHHT
T ss_pred             CCCCcHHHHHHHHHHHc
Confidence            48999999999999874

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.02  E-value=0.021  Score=43.71  Aligned_cols=43  Identities=14%  Similarity=0.092  Sum_probs=28.3

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKK   48 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~   48 (180)
                      .||+||||||.+++.... . +. ..++|++..  .+..++...+...
T Consensus        76 ~pG~GKTtl~l~ia~~~a-~-~g-~~vl~~slE--~s~~~l~~R~~~~  118 (315)
T 3bh0_A           76 RPSMGKTAFALKQAKNMS-D-ND-DVVNLHSLE--MGKKENIKRLIVT  118 (315)
T ss_dssp             CTTSSHHHHHHHHHHHHH-T-TT-CEEEEEESS--SCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH-H-cC-CeEEEEECC--CCHHHHHHHHHHH
Confidence            389999999999987742 2 22 567777654  4555555555543

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=95.94  E-value=0.0049  Score=41.95  Aligned_cols=17  Identities=29%  Similarity=0.335  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||||++.+++..
T Consensus        44 ~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           44 EEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             SSTTTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            37999999999999875

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=95.92  E-value=0.02  Score=40.99  Aligned_cols=82  Identities=20%  Similarity=0.131  Sum_probs=43.2

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--------------------CCCc
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDS--------------------WKNK   60 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--------------------~~~~   60 (180)
                      .+|+|||||++.++.... . .. ..++|++...  ....+...+ ..++......                    ....
T Consensus        31 ~~GsGKTtl~~~l~~~~~-~-~~-~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (235)
T 2w0m_A           31 EPGTGKTIFSLHFIAKGL-R-DG-DPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKEDQWSLVNL  104 (235)
T ss_dssp             STTSSHHHHHHHHHHHHH-H-HT-CCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----CTTBCSSC
T ss_pred             CCCCCHHHHHHHHHHHHH-H-CC-CeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCceeeecCC
Confidence            379999999999986642 1 11 2355655433  344444433 2443220000                    0112


Q ss_pred             ChHHHHHHHHHHhC-CCc--EEEEEeCCCCc
Q 046006           61 NSEEKALEIFRFLS-KKK--FVLLLDDKWER   88 (180)
Q Consensus        61 ~~~~~~~~l~~~L~-~k~--~LlVlDdv~~~   88 (180)
                      +.++....+.+.+. .++  .++|+|.....
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~llilDe~~~~  135 (235)
T 2w0m_A          105 TPEELVNKVIEAKQKLGYGKARLVIDSVSAL  135 (235)
T ss_dssp             CHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred             CHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence            45565555555543 233  49999997543

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=95.91  E-value=0.02  Score=46.52  Aligned_cols=84  Identities=15%  Similarity=0.238  Sum_probs=52.0

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC-----C-----CCCCcChH------H
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG-----D-----SWKNKNSE------E   64 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~-----~~~~~~~~------~   64 (180)
                      +|+|||+|+..+.++.  .+.+-+.++++-+++.. ...++.+++...=...+.     .     ........      .
T Consensus       174 ~GvGKT~L~~~l~~~~--a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~~R~~~~~  251 (498)
T 1fx0_B          174 AGVGKTVLIMELINNI--AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGL  251 (498)
T ss_dssp             SSSSHHHHHHHHHHHT--TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHHHHTTHHH
T ss_pred             CCCCchHHHHHHHHHH--HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHHHHHHHHH
Confidence            6999999999998874  22455788888888766 566677777654211100     0     01111111      2


Q ss_pred             HHHHHHHHhC---CCcEEEEEeCCCC
Q 046006           65 KALEIFRFLS---KKKFVLLLDDKWE   87 (180)
Q Consensus        65 ~~~~l~~~L~---~k~~LlVlDdv~~   87 (180)
                      ..-.+.++++   ++.+|+++||+-.
T Consensus       252 ~altiAEyfrd~~G~dVLl~~DsitR  277 (498)
T 1fx0_B          252 TALTMAEYFRDVNEQDVLLFIDNIFR  277 (498)
T ss_dssp             HHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred             HHHHHHHHHHHhcCCcEEEEeccHHH
Confidence            2334555564   5799999999864

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.77  E-value=0.014  Score=44.44  Aligned_cols=17  Identities=29%  Similarity=0.415  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||++|+.+++..
T Consensus        56 ~~G~GKT~la~~la~~l   72 (324)
T 3u61_B           56 SPGTGKTTVAKALCHDV   72 (324)
T ss_dssp             STTSSHHHHHHHHHHHT
T ss_pred             cCCCCHHHHHHHHHHHh
Confidence            37999999999999874

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.75  E-value=0.014  Score=47.30  Aligned_cols=33  Identities=18%  Similarity=0.148  Sum_probs=23.2

Q ss_pred             ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006          105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP  137 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P  137 (180)
                      ..+.++..+.++-.+++..+          ....+++.+.|..
T Consensus       179 ~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~s  221 (476)
T 2ce7_A          179 KKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFV  221 (476)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCC
T ss_pred             eEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCc
Confidence            36677777777777787766          3556777777765

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.70  E-value=0.042  Score=43.58  Aligned_cols=87  Identities=9%  Similarity=0.089  Sum_probs=46.5

Q ss_pred             CCCCcHHHHHHHHHcccccc--c-CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCCCCcChH---HHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVS--S-TDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDG------DSWKNKNSE---EKALE   68 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~--~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~---~~~~~   68 (180)
                      .+|+|||||+..++-.....  . ..-..++|++....++...+ ..+++.++....      ......+.+   +....
T Consensus       186 ~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~~~~~~l~~  264 (400)
T 3lda_A          186 EFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDA  264 (400)
T ss_dssp             STTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChHHHHHHHHH
Confidence            37999999999775331110  0 12346888887666555544 345666654310      001112222   22333


Q ss_pred             HHHHh-CCCcEEEEEeCCCCc
Q 046006           69 IFRFL-SKKKFVLLLDDKWER   88 (180)
Q Consensus        69 l~~~L-~~k~~LlVlDdv~~~   88 (180)
                      +.+.+ ..+.-++|+|.+...
T Consensus       265 ~~~~l~~~~~~llVIDs~t~~  285 (400)
T 3lda_A          265 AAQMMSESRFSLIVVDSVMAL  285 (400)
T ss_dssp             HHHHHHHSCEEEEEEETGGGG
T ss_pred             HHHHHHhcCCceEEecchhhh
Confidence            33333 356789999997544

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.70  E-value=0.011  Score=44.62  Aligned_cols=17  Identities=35%  Similarity=0.503  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||++|+.+++..
T Consensus        55 ~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           55 PTGVGKTELAKTLAATL   71 (311)
T ss_dssp             CSSSSHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHH
Confidence            47999999999999874

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=95.65  E-value=0.071  Score=43.14  Aligned_cols=84  Identities=14%  Similarity=0.201  Sum_probs=50.3

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC------CC---CCCCCcChHH------H
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLL------DG---DSWKNKNSEE------K   65 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~---~~~~~~~~~~------~   65 (180)
                      +|+|||+|+..+.++..  +.+-+.++++-+++.. ...++.+++...=...      ..   ..........      .
T Consensus       162 ~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~~r~~~~~~  239 (482)
T 2ck3_D          162 AGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALT  239 (482)
T ss_dssp             TTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHHHHHHHHHH
Confidence            69999999999988742  2445677888888765 4566777776542221      00   0111112111      1


Q ss_pred             HHHHHHHh---CCCcEEEEEeCCCC
Q 046006           66 ALEIFRFL---SKKKFVLLLDDKWE   87 (180)
Q Consensus        66 ~~~l~~~L---~~k~~LlVlDdv~~   87 (180)
                      .-.+.+++   +++.+|+++||+-.
T Consensus       240 a~tiAEyfrd~~G~dVLll~DsitR  264 (482)
T 2ck3_D          240 GLTVAEYFRDQEGQDVLLFIDNIFR  264 (482)
T ss_dssp             HHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred             HHHHHHHHHHhcCCcEEEEeccHHH
Confidence            22233444   47899999999864

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.60  E-value=0.0088  Score=40.16  Aligned_cols=15  Identities=13%  Similarity=0.127  Sum_probs=13.9

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||++|+.+++.
T Consensus        36 ~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           36 AGSPFETVARYFHKN   50 (143)
T ss_dssp             TTCCHHHHHGGGCCT
T ss_pred             CCccHHHHHHHHHHh
Confidence            799999999999887

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=95.59  E-value=0.0045  Score=42.83  Aligned_cols=17  Identities=12%  Similarity=0.303  Sum_probs=15.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        11 ~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A           11 GSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CTTSSHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHhc
Confidence            58999999999999875

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=95.50  E-value=0.033  Score=43.17  Aligned_cols=42  Identities=19%  Similarity=0.180  Sum_probs=27.3

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGK   47 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~   47 (180)
                      .+|+||||||..++.... .  .-..++|++.  .-+..++...++.
T Consensus        54 ~pG~GKTt~al~ia~~~a-~--~g~~Vl~fSl--Ems~~ql~~Rlls   95 (338)
T 4a1f_A           54 RPSMGKTSLMMNMVLSAL-N--DDRGVAVFSL--EMSAEQLALRALS   95 (338)
T ss_dssp             CTTSCHHHHHHHHHHHHH-H--TTCEEEEEES--SSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH-H--cCCeEEEEeC--CCCHHHHHHHHHH
Confidence            379999999999988853 2  2235666654  3455566555543

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=95.50  E-value=0.05  Score=41.44  Aligned_cols=33  Identities=12%  Similarity=-0.079  Sum_probs=24.0

Q ss_pred             eEeecCCChhhhHHHHHHH--HHHHHHHHcCCChH
Q 046006          106 NFKVECLSDNDAWELLRQK--LAQTVAKKCVGLPL  138 (180)
Q Consensus       106 ~~~l~~L~~~~a~~Lf~~~--~~~~i~~~c~g~PL  138 (180)
                      .++++++++++..+.+.+.  +..+-++.+.|.+-
T Consensus       133 ~~~f~~l~~~~i~~~L~~~~~i~~~~~~~~~g~~~  167 (305)
T 2gno_A          133 VFRVVVNVPKEFRDLVKEKIGDLWEELPLLERDFK  167 (305)
T ss_dssp             SEEEECCCCHHHHHHHHHHHTTHHHHCGGGGTCHH
T ss_pred             eEeCCCCCHHHHHHHHHHHhCCCHHHHHHHCCCHH
Confidence            8899999999999988776  23333455666654

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.46  E-value=0.056  Score=41.00  Aligned_cols=77  Identities=13%  Similarity=0.057  Sum_probs=38.8

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV   79 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L   79 (180)
                      .+|+||||++..++..+. .... ..+..+.... .....+.+....+..+.+ .  ....+..++...+. .+ .+.=+
T Consensus       113 ~~GsGKTTl~~~LA~~l~-~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~-~--~~~~~~~~l~~al~-~~-~~~dl  185 (296)
T 2px0_A          113 STGAGKTTTLAKLAAISM-LEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAP-L--EVCYTKEEFQQAKE-LF-SEYDH  185 (296)
T ss_dssp             STTSSHHHHHHHHHHHHH-HTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCC-C--CBCSSHHHHHHHHH-HG-GGSSE
T ss_pred             CCCCCHHHHHHHHHHHHH-HhcC-CEEEEEecCcccchHHHHHHHHHHhcCCC-e--EecCCHHHHHHHHH-Hh-cCCCE
Confidence            379999999999987753 1111 1344454332 233433444444444433 1  11123344433343 23 34457


Q ss_pred             EEEeC
Q 046006           80 LLLDD   84 (180)
Q Consensus        80 lVlDd   84 (180)
                      +++|-
T Consensus       186 vIiDT  190 (296)
T 2px0_A          186 VFVDT  190 (296)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            78883

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.42  E-value=0.04  Score=51.87  Aligned_cols=78  Identities=15%  Similarity=0.060  Sum_probs=49.6

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCCcChHHHHHHHHHHhC-CCc
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD--SWKNKNSEEKALEIFRFLS-KKK   77 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~~L~-~k~   77 (180)
                      ++|+|||+||.+++..- .  ..=..+.|++....++...     ++.++.+...  -....+.++..+.+++..+ .+.
T Consensus      1435 ppGtGKT~LA~ala~ea-~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~ 1506 (2050)
T 3cmu_A         1435 PESSGKTTLTLQVIAAA-Q--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 1506 (2050)
T ss_dssp             CTTSSHHHHHHHHHHHH-H--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred             CCCCCHHHHHHHHHHHH-H--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHHHHhcCCC
Confidence            58999999999998873 2  2223567777777666655     4555532100  1122344566666665553 678


Q ss_pred             EEEEEeCCC
Q 046006           78 FVLLLDDKW   86 (180)
Q Consensus        78 ~LlVlDdv~   86 (180)
                      -+||+|.+.
T Consensus      1507 ~lVVIDsi~ 1515 (2050)
T 3cmu_A         1507 DVIVVDSVA 1515 (2050)
T ss_dssp             SEEEESCGG
T ss_pred             CEEEEcChh
Confidence            899999985

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.42  E-value=0.098  Score=40.11  Aligned_cols=40  Identities=13%  Similarity=0.106  Sum_probs=31.0

Q ss_pred             ceEeecCCChhhhHHHHHHH------------HHHHHHHHcCCChHHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK------------LAQTVAKKCVGLPLALITIG  144 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~------------~~~~i~~~c~g~PLal~~~~  144 (180)
                      ..+++++++.++..+.+.+.            ....|++.++|.+-.+..+.
T Consensus       186 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l  237 (354)
T 1sxj_E          186 LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLML  237 (354)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred             eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence            57889999999999988865            35778889999886554433

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.34  E-value=0.059  Score=41.84  Aligned_cols=87  Identities=16%  Similarity=0.212  Sum_probs=46.3

Q ss_pred             CCCCcHHHHHHHHHcccccc--cCCCCe-EEEEEeCCCCCHHHHHHHHHHHhCCCCC---------CCCCCcChHHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVS--STDFDC-VIWIVVSKDLQLEKIQEIVGKKVGLLDG---------DSWKNKNSEEKALE   68 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~--~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~~~~~~~~~   68 (180)
                      .+|+|||||+.+++......  .....+ ++|++....+.... +..+++..+....         .........+....
T Consensus       139 ~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~~~~~~v~~ni~~~~~~~~~~~~~~l~~  217 (349)
T 1pzn_A          139 EFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQ  217 (349)
T ss_dssp             STTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTTCCHHHHGGGEEEEECCSHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCHHHHhhCEEEEecCChHHHHHHHHH
Confidence            37999999999998763100  111123 48887655443333 3345554433200         00001112334444


Q ss_pred             HHHHhC------CCcEEEEEeCCCCc
Q 046006           69 IFRFLS------KKKFVLLLDDKWER   88 (180)
Q Consensus        69 l~~~L~------~k~~LlVlDdv~~~   88 (180)
                      +...+.      .+.-+||+|.+-..
T Consensus       218 ~~~~~~~lS~G~~~~~llIlDs~ta~  243 (349)
T 1pzn_A          218 AEDKIKELLNTDRPVKLLIVDSLTSH  243 (349)
T ss_dssp             HHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred             HHHHHHHhccccCCCCEEEEeCchHh
Confidence            555553      47889999998665

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=95.32  E-value=0.055  Score=43.77  Aligned_cols=84  Identities=13%  Similarity=0.196  Sum_probs=44.9

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChHHH------HHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSEEK------ALEIFR   71 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~------~~~l~~   71 (180)
                      +|+|||||++.+..+..  ..+-+.++++-+++.. ...+++.++...=.....   ......++...      .-.+.+
T Consensus       160 sGvGKTtL~~~l~~~~~--~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~~ltiAE  237 (473)
T 1sky_E          160 AGVGKTVLIQELIHNIA--QEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTGLTMAE  237 (473)
T ss_dssp             SSSCHHHHHHHHHHHHH--HHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHhhhh--hccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence            79999999999988742  1233455667777654 344555555432000000   00011111111      112333


Q ss_pred             Hh---CCCcEEEEEeCCCC
Q 046006           72 FL---SKKKFVLLLDDKWE   87 (180)
Q Consensus        72 ~L---~~k~~LlVlDdv~~   87 (180)
                      ++   ++++.|+++||+..
T Consensus       238 yFrd~~G~~VLl~~D~itR  256 (473)
T 1sky_E          238 YFRDEQGQDGLLFIDNIFR  256 (473)
T ss_dssp             HHHHHSCCEEEEEEECTHH
T ss_pred             HHHHhcCCcEEEEeccHHH
Confidence            33   58899999999854

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=95.30  E-value=0.01  Score=46.91  Aligned_cols=83  Identities=22%  Similarity=0.273  Sum_probs=41.5

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCC-HHHHHHHHHHHhCCCCCCCCCCcChHHH------HHHHHHHh
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQ-LEKIQEIVGKKVGLLDGDSWKNKNSEEK------ALEIFRFL   73 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~------~~~l~~~L   73 (180)
                      .+|+|||||++.+.+........++ ++++-+++... ..++.+.+ +..-..   .....+....      .-.+.+++
T Consensus       182 ~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~~~~~~~-~~~vV~---atadep~~~r~~~a~~alt~AEyf  256 (422)
T 3ice_A          182 PPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVTEMQRLV-KGEVVA---STFDEPASRHVQVAEMVIEKAKRL  256 (422)
T ss_dssp             CSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHHHHHTTC-SSEEEE---ECTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHHHHHHHh-CeEEEE---eCCCCCHHHHHHHHHHHHHHHHHH
Confidence            3799999999998876421112333 34566776542 33332222 100000   1111111111      11122333


Q ss_pred             --CCCcEEEEEeCCCCc
Q 046006           74 --SKKKFVLLLDDKWER   88 (180)
Q Consensus        74 --~~k~~LlVlDdv~~~   88 (180)
                        +++.+|+++||+...
T Consensus       257 rd~G~dVLil~DslTR~  273 (422)
T 3ice_A          257 VEHKKDVIILLDSITRL  273 (422)
T ss_dssp             HHTSCEEEEEEECHHHH
T ss_pred             HhcCCCEEEEEeCchHH
Confidence              589999999998653

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.21  E-value=0.041  Score=39.85  Aligned_cols=82  Identities=12%  Similarity=0.032  Sum_probs=44.5

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----------C--------------
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDG-----------D--------------   55 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----------~--------------   55 (180)
                      .+|+||||||.+++....   ..-..++|++...  +..++...+ ..++....           .              
T Consensus        31 ~~GsGKTtl~~~~~~~~~---~~~~~v~~~~~e~--~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  104 (247)
T 2dr3_A           31 GPGTGKTIFSQQFLWNGL---KMGEPGIYVALEE--HPVQVRQNM-AQFGWDVKPYEEKGMFAMVDAFTAGIGKSKEYEK  104 (247)
T ss_dssp             CTTSSHHHHHHHHHHHHH---HTTCCEEEEESSS--CHHHHHHHH-HTTTCCCHHHHHHTSEEEEECSTTTTCC--CCCS
T ss_pred             CCCCCHHHHHHHHHHHHH---hcCCeEEEEEccC--CHHHHHHHH-HHcCCCHHHHhhCCcEEEEecchhhccccccccc
Confidence            479999999998877642   1223577776543  334443333 22322100           0              


Q ss_pred             --CCCCcChHHHHHHHHHHhC-CCcEEEEEeCCCCc
Q 046006           56 --SWKNKNSEEKALEIFRFLS-KKKFVLLLDDKWER   88 (180)
Q Consensus        56 --~~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~~~   88 (180)
                        .....+..+....+.+.++ .+.-++|+|.+...
T Consensus       105 ~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l  140 (247)
T 2dr3_A          105 YIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTL  140 (247)
T ss_dssp             CBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGG
T ss_pred             ccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHh
Confidence              0012345555666666553 24558999997644

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=95.18  E-value=0.055  Score=43.22  Aligned_cols=18  Identities=28%  Similarity=0.396  Sum_probs=15.5

Q ss_pred             CCCCcHHHHHHHHHcccc
Q 046006            1 MGGVGKTTLLTHINNKFL   18 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~   18 (180)
                      .+|+||||++..++..+.
T Consensus       106 ~~GsGKTT~~~~LA~~l~  123 (425)
T 2ffh_A          106 LQGSGKTTTAAKLALYYK  123 (425)
T ss_dssp             CTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            479999999999988763

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.12  E-value=0.036  Score=45.23  Aligned_cols=33  Identities=15%  Similarity=0.218  Sum_probs=23.2

Q ss_pred             ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006          105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP  137 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P  137 (180)
                      ..+.++..+.++-.++|..+          ....|+..+.|..
T Consensus       194 r~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~  236 (499)
T 2dhr_A          194 RQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV  236 (499)
T ss_dssp             CEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCC
T ss_pred             eEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCC
Confidence            46778888888878888765          3566777776654

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=95.12  E-value=0.22  Score=35.41  Aligned_cols=49  Identities=22%  Similarity=0.263  Sum_probs=27.8

Q ss_pred             CCCCcHHHHHHHHHcccc--cccC-CCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 046006            1 MGGVGKTTLLTHINNKFL--VSST-DFDCVIWIVVSKDLQLEKIQEIVGKKVG   50 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~--~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~   50 (180)
                      .+|+|||||++.++....  .-.. .-...+|+.-........ +..+++..+
T Consensus        33 ~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~   84 (231)
T 4a74_A           33 EFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRG   84 (231)
T ss_dssp             STTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcC
Confidence            479999999999986421  1111 134577877554433333 334444444

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=95.10  E-value=0.0078  Score=41.21  Aligned_cols=17  Identities=12%  Similarity=0.143  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus         9 ~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            9 PDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             SSSSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            57999999999998774

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=95.09  E-value=0.14  Score=41.65  Aligned_cols=43  Identities=12%  Similarity=0.006  Sum_probs=27.9

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGK   47 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~   47 (180)
                      .+|+||||||.+++.+..  ..+=..++|++...  +..++...++.
T Consensus       250 ~pG~GKT~lal~~a~~~a--~~~g~~vl~~s~E~--s~~~l~~r~~~  292 (503)
T 1q57_A          250 GSGMVMSTFVRQQALQWG--TAMGKKVGLAMLEE--SVEETAEDLIG  292 (503)
T ss_dssp             SSCHHHHHHHHHHHHHHT--TTSCCCEEEEESSS--CHHHHHHHHHH
T ss_pred             cCCCCchHHHHHHHHHHH--HhcCCcEEEEeccC--CHHHHHHHHHH
Confidence            379999999999988742  12123567776543  45566665543

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.08  E-value=0.0091  Score=41.18  Aligned_cols=15  Identities=27%  Similarity=0.293  Sum_probs=13.9

Q ss_pred             CCCCcHHHHHHHHHc
Q 046006            1 MGGVGKTTLLTHINN   15 (180)
Q Consensus         1 mgGiGKTtLA~~~~~   15 (180)
                      ++|+||||+|+.+..
T Consensus        10 ~~GsGKST~a~~L~~   24 (181)
T 1ly1_A           10 CPGSGKSTWAREFIA   24 (181)
T ss_dssp             CTTSSHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHh
Confidence            589999999999987

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=95.03  E-value=0.11  Score=41.60  Aligned_cols=18  Identities=28%  Similarity=0.427  Sum_probs=15.4

Q ss_pred             CCCCcHHHHHHHHHcccc
Q 046006            1 MGGVGKTTLLTHINNKFL   18 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~   18 (180)
                      .+|+||||++..++..+.
T Consensus       108 ~~GvGKTT~a~~LA~~l~  125 (433)
T 2xxa_A          108 LQGAGKTTSVGKLGKFLR  125 (433)
T ss_dssp             STTSSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            389999999999998763

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.01  E-value=0.063  Score=40.96  Aligned_cols=84  Identities=18%  Similarity=0.195  Sum_probs=42.7

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCCcChHHH-HHHHHHHhCCCcE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD-LQLEKIQEIVGKKVGLLDGDSWKNKNSEEK-ALEIFRFLSKKKF   78 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~l~~~L~~k~~   78 (180)
                      .+|+||||++..++..+. . .. ..+..+..... ....+-+...++..+.+........+.... ...+...+..+.-
T Consensus       112 ~~GsGKTTl~~~LA~~l~-~-~g-~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~~~~d  188 (306)
T 1vma_A          112 VNGTGKTTSCGKLAKMFV-D-EG-KSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALARNKD  188 (306)
T ss_dssp             CTTSSHHHHHHHHHHHHH-H-TT-CCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHHTTCS
T ss_pred             CCCChHHHHHHHHHHHHH-h-cC-CEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHHhcCCC
Confidence            379999999999998753 1 11 22444443321 112222344555555431111122233332 2345555555556


Q ss_pred             EEEEeCCCC
Q 046006           79 VLLLDDKWE   87 (180)
Q Consensus        79 LlVlDdv~~   87 (180)
                      ++|+|..-.
T Consensus       189 vvIiDtpg~  197 (306)
T 1vma_A          189 VVIIDTAGR  197 (306)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEECCCc
Confidence            888897643

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=95.01  E-value=0.077  Score=42.49  Aligned_cols=17  Identities=29%  Similarity=0.411  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+||||++..++..+
T Consensus       105 ~~GsGKTTt~~kLA~~l  121 (433)
T 3kl4_A          105 VQGSGKTTTAGKLAYFY  121 (433)
T ss_dssp             CTTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            47999999999998775

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=94.97  E-value=0.024  Score=46.71  Aligned_cols=17  Identities=41%  Similarity=0.571  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||||+.++...
T Consensus       116 p~GtGKTtlar~ia~~l  132 (543)
T 3m6a_A          116 PPGVGKTSLAKSIAKSL  132 (543)
T ss_dssp             SSSSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhc
Confidence            47999999999998874

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=94.96  E-value=0.01  Score=40.56  Aligned_cols=15  Identities=27%  Similarity=0.519  Sum_probs=13.3

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      ++|+||||+|+.+ ..
T Consensus         9 ~~GsGKsT~a~~L-~~   23 (179)
T 3lw7_A            9 MPGSGKSEFAKLL-KE   23 (179)
T ss_dssp             CTTSCHHHHHHHH-HH
T ss_pred             CCCCCHHHHHHHH-HH
Confidence            5899999999999 54

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=94.77  E-value=0.075  Score=40.34  Aligned_cols=85  Identities=14%  Similarity=0.053  Sum_probs=43.0

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC-CCcE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS-KKKF   78 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~-~k~~   78 (180)
                      .+|+||||++..++..+. . .. ..+.++.... .....+.+....+..+.+-.......+..+......+.++ ++-=
T Consensus       106 ~~G~GKTT~~~~la~~~~-~-~g-~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~~~~D  182 (297)
T 1j8m_F          106 VQGTGKTTTAGKLAYFYK-K-KG-FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKME  182 (297)
T ss_dssp             SSCSSTTHHHHHHHHHHH-H-TT-CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHTTCS
T ss_pred             CCCCCHHHHHHHHHHHHH-H-CC-CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHhCCCC
Confidence            379999999999987753 1 11 2344555432 2233333444455554431111122344554444444443 3333


Q ss_pred             EEEEeCCCCc
Q 046006           79 VLLLDDKWER   88 (180)
Q Consensus        79 LlVlDdv~~~   88 (180)
                      ++++|-.-..
T Consensus       183 ~ViIDTpg~~  192 (297)
T 1j8m_F          183 IIIVDTAGRH  192 (297)
T ss_dssp             EEEEECCCSC
T ss_pred             EEEEeCCCCc
Confidence            7777775433

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=94.72  E-value=0.15  Score=40.73  Aligned_cols=44  Identities=11%  Similarity=-0.024  Sum_probs=28.5

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKK   48 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~   48 (180)
                      .||+|||+||.+++.... . ..-..++|++..  .+..++...++..
T Consensus       208 ~pg~GKT~lal~ia~~~a-~-~~g~~vl~~slE--~~~~~l~~R~~~~  251 (444)
T 2q6t_A          208 RPAMGKTAFALTIAQNAA-L-KEGVGVGIYSLE--MPAAQLTLRMMCS  251 (444)
T ss_dssp             CTTSCHHHHHHHHHHHHH-H-TTCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH-H-hCCCeEEEEECC--CCHHHHHHHHHHH
Confidence            379999999999988742 1 112346676654  4556666666543

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=94.69  E-value=0.013  Score=40.77  Aligned_cols=17  Identities=35%  Similarity=0.714  Sum_probs=15.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus         9 ~~GsGKsT~~~~L~~~l   25 (194)
T 1nks_A            9 IPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             CTTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            58999999999999875

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=94.69  E-value=0.013  Score=40.75  Aligned_cols=17  Identities=24%  Similarity=0.372  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        13 ~~GsGKst~a~~La~~l   29 (185)
T 3trf_A           13 LMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            57999999999998874

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=94.66  E-value=0.014  Score=41.41  Aligned_cols=17  Identities=41%  Similarity=0.450  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.++..+
T Consensus        33 ~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           33 YMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             CTTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            58999999999999874

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=94.65  E-value=0.015  Score=40.61  Aligned_cols=17  Identities=29%  Similarity=0.346  Sum_probs=14.8

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||||++.++..+
T Consensus        17 ~~GsGKSTl~~~La~~~   33 (191)
T 1zp6_A           17 HPGSGKSTIAEALANLP   33 (191)
T ss_dssp             CTTSCHHHHHHHHHTCS
T ss_pred             CCCCCHHHHHHHHHhcc
Confidence            58999999999998763

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=94.59  E-value=0.015  Score=40.55  Aligned_cols=17  Identities=29%  Similarity=0.347  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        11 ~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A           11 VPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             CTTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            58999999999998875

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=94.58  E-value=0.081  Score=40.06  Aligned_cols=82  Identities=15%  Similarity=0.180  Sum_probs=40.6

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCCCcChHHHHHH-HHHHhCCCcE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDGDSWKNKNSEEKALE-IFRFLSKKKF   78 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-l~~~L~~k~~   78 (180)
                      .+|+||||++..++..+. . .. ..+.++...... .....+..+.+..+.+........++.++.+. +......+.=
T Consensus       106 ~~G~GKTT~~~~la~~~~-~-~~-~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~~~~D  182 (295)
T 1ls1_A          106 LQGSGKTTTAAKLALYYK-G-KG-RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARD  182 (295)
T ss_dssp             CTTTTHHHHHHHHHHHHH-H-TT-CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred             CCCCCHHHHHHHHHHHHH-H-cC-CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHhCCCC
Confidence            379999999999998753 1 11 223444433221 11122334455555431111112344444333 3333334455


Q ss_pred             EEEEeCC
Q 046006           79 VLLLDDK   85 (180)
Q Consensus        79 LlVlDdv   85 (180)
                      ++|+|--
T Consensus       183 ~viiDtp  189 (295)
T 1ls1_A          183 LILVDTA  189 (295)
T ss_dssp             EEEEECC
T ss_pred             EEEEeCC
Confidence            7888876

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=94.57  E-value=0.015  Score=39.93  Aligned_cols=17  Identities=24%  Similarity=0.407  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+++.+...+
T Consensus        12 ~~GsGKSTl~~~La~~l   28 (173)
T 1kag_A           12 PMGAGKSTIGRQLAQQL   28 (173)
T ss_dssp             CTTSCHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999998874

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=94.51  E-value=0.015  Score=40.57  Aligned_cols=17  Identities=29%  Similarity=0.342  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        13 ~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A           13 HPATGKTTLSQALATGL   29 (193)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            58999999999998874

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=94.48  E-value=0.016  Score=40.01  Aligned_cols=17  Identities=29%  Similarity=0.493  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.++..+
T Consensus        12 ~~GsGKsTla~~La~~l   28 (175)
T 1via_A           12 FMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CTTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            58999999999998875

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=94.40  E-value=0.08  Score=42.52  Aligned_cols=17  Identities=35%  Similarity=0.614  Sum_probs=14.7

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+||||++..++..+
T Consensus       108 ~~G~GKTTt~~kLA~~l  124 (443)
T 3dm5_A          108 IQGSGKTTTVAKLARYF  124 (443)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHH
Confidence            37999999999998775

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=94.40  E-value=0.029  Score=45.20  Aligned_cols=85  Identities=15%  Similarity=0.191  Sum_probs=46.8

Q ss_pred             CCCcHHHHHHHHHccccccc-CCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChHH------HHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSS-TDFD-CVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSEE------KALEI   69 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~-~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~------~~~~l   69 (180)
                      +|+|||+|+..++++- ... ++-+ .++++-+++.. ...++.+++...=.....   ......+...      ..-.+
T Consensus       160 ~G~GKt~L~~~Ia~~~-~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~~~a~ti  238 (465)
T 3vr4_D          160 SGLPHKELAAQIARQA-TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPRMALTA  238 (465)
T ss_dssp             TTSCHHHHHHHHHHHC-BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             CCcChHHHHHHHHHHH-HhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHHHHHHHH
Confidence            6999999999998873 221 1112 55666677654 556666665443101000   0111122211      12334


Q ss_pred             HHHhC---CCcEEEEEeCCCC
Q 046006           70 FRFLS---KKKFVLLLDDKWE   87 (180)
Q Consensus        70 ~~~L~---~k~~LlVlDdv~~   87 (180)
                      .++++   ++.+|+++||+-.
T Consensus       239 AEyfrd~~G~~VLl~~DslTr  259 (465)
T 3vr4_D          239 AEYLAYEKGMHVLVIMTDMTN  259 (465)
T ss_dssp             HHHHHHTTCCEEEEEEECHHH
T ss_pred             HHHHHHhcCCeEEEEEcChHH
Confidence            55553   7899999999864

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=94.37  E-value=0.11  Score=48.99  Aligned_cols=80  Identities=16%  Similarity=0.059  Sum_probs=51.4

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCCcChHHHHHHHHHHh-CCCc
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD--SWKNKNSEEKALEIFRFL-SKKK   77 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~~L-~~k~   77 (180)
                      .+|+||||||.+++....   ..-..++|++.....+...     ++.++.+...  -....+.++....++... +.+.
T Consensus       391 ~pGsGKTtLaLqia~~~a---~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~lv~~~~~  462 (2050)
T 3cmu_A          391 PESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV  462 (2050)
T ss_dssp             CTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred             CCCCCHHHHHHHHHHHHH---hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHHHHHhcCC
Confidence            479999999999988742   2223578888776666542     5566654111  012345666666666554 3567


Q ss_pred             EEEEEeCCCCc
Q 046006           78 FVLLLDDKWER   88 (180)
Q Consensus        78 ~LlVlDdv~~~   88 (180)
                      -++|+|-+...
T Consensus       463 ~lIVIDSL~al  473 (2050)
T 3cmu_A          463 DVIVVDSVAAL  473 (2050)
T ss_dssp             SEEEESCGGGC
T ss_pred             cEEEECCHHHh
Confidence            79999998654

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=94.32  E-value=0.027  Score=37.73  Aligned_cols=17  Identities=18%  Similarity=0.075  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||++|+.+++..
T Consensus        32 ~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           32 APGTGRMTGARYLHQFG   48 (145)
T ss_dssp             STTSSHHHHHHHHHHSS
T ss_pred             CCCCCHHHHHHHHHHhC
Confidence            37999999999999873

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=94.30  E-value=0.1  Score=45.09  Aligned_cols=63  Identities=24%  Similarity=0.188  Sum_probs=37.1

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh-CCCcEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL-SKKKFV   79 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~L   79 (180)
                      +||+|||.||+++++...     +   -++.++    ..+    ++...        -..+ +...+.+.+.- +..+++
T Consensus       519 PPGtGKT~lAkaiA~e~~-----~---~f~~v~----~~~----l~s~~--------vGes-e~~vr~lF~~Ar~~~P~I  573 (806)
T 3cf2_A          519 PPGCGKTLLAKAIANECQ-----A---NFISIK----GPE----LLTMW--------FGES-EANVREIFDKARQAAPCV  573 (806)
T ss_dssp             STTSSHHHHHHHHHHTTT-----C---EEEECC----HHH----HHTTT--------CSSC-HHHHHHHHHHHHTTCSEE
T ss_pred             CCCCCchHHHHHHHHHhC-----C---ceEEec----cch----hhccc--------cchH-HHHHHHHHHHHHHcCCce
Confidence            589999999999999842     1   222322    222    22211        1122 33444444444 567999


Q ss_pred             EEEeCCCCc
Q 046006           80 LLLDDKWER   88 (180)
Q Consensus        80 lVlDdv~~~   88 (180)
                      |.||+++..
T Consensus       574 ifiDEiDsl  582 (806)
T 3cf2_A          574 LFFDELDSI  582 (806)
T ss_dssp             EECSCGGGC
T ss_pred             eechhhhHH
Confidence            999999864

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=94.28  E-value=0.016  Score=40.15  Aligned_cols=17  Identities=47%  Similarity=0.520  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        19 ~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           19 TPGVGKTTLGKELASKS   35 (180)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999998774

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=94.27  E-value=0.019  Score=40.41  Aligned_cols=17  Identities=35%  Similarity=0.573  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus         8 ~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            8 TVGAGKSTISAEISKKL   24 (205)
T ss_dssp             CTTSCHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHhc
Confidence            57999999999999875

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=94.23  E-value=0.019  Score=40.64  Aligned_cols=17  Identities=24%  Similarity=0.399  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        26 ~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           26 VSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             STTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999998874

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=94.09  E-value=0.099  Score=45.41  Aligned_cols=20  Identities=15%  Similarity=0.152  Sum_probs=16.5

Q ss_pred             ceEeecCCChhhhHHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK  124 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~  124 (180)
                      ..+.+++++.++..+++...
T Consensus       325 ~~i~l~~p~~~e~~~iL~~~  344 (854)
T 1qvr_A          325 QPVYVDEPTVEETISILRGL  344 (854)
T ss_dssp             CCEEECCCCHHHHHHHHHHH
T ss_pred             ceEEeCCCCHHHHHHHHHhh
Confidence            35889999999999998754

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=94.07  E-value=0.022  Score=39.56  Aligned_cols=17  Identities=24%  Similarity=0.386  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        12 ~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A           12 PPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             CTTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999998764

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=94.01  E-value=0.023  Score=38.86  Aligned_cols=17  Identities=24%  Similarity=0.423  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        15 ~~GsGKSTva~~La~~l   31 (168)
T 1zuh_A           15 FMGSGKSSLAQELGLAL   31 (168)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            57999999999998874

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=94.00  E-value=0.15  Score=40.95  Aligned_cols=41  Identities=12%  Similarity=0.004  Sum_probs=25.3

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVG   46 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~   46 (180)
                      .||+||||||.+++.+.. ..  -..++|++...  +..++...++
T Consensus       205 ~pG~GKTtlal~ia~~~a-~~--g~~vl~fSlEm--s~~ql~~R~~  245 (444)
T 3bgw_A          205 RPSMGKTAFALKQAKNMS-DN--DDVVNLHSLEM--GKKENIKRLI  245 (444)
T ss_dssp             CSSSSHHHHHHHHHHHHH-HT--TCEEEEECSSS--CTTHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHH-Hc--CCEEEEEECCC--CHHHHHHHHH
Confidence            389999999999998853 22  23566665443  3334444443

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=93.99  E-value=0.02  Score=42.35  Aligned_cols=17  Identities=24%  Similarity=0.225  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||||+.++..+
T Consensus         9 ~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            9 PTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHhcC
Confidence            57999999999998764

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=93.97  E-value=0.11  Score=48.31  Aligned_cols=80  Identities=16%  Similarity=0.063  Sum_probs=51.4

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCCcChHHHHHHHHHHh-CCCc
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD--SWKNKNSEEKALEIFRFL-SKKK   77 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~~L-~~k~   77 (180)
                      .+|+||||||.+++.... .  .-..++|++...+.+..     .++.++.+...  .....+.++....++... +.+.
T Consensus       391 ~pGsGKTtLaLq~a~~~~-~--~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv~~~~~  462 (1706)
T 3cmw_A          391 PESSGKTTLTLQVIAAAQ-R--EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV  462 (1706)
T ss_dssp             STTSSHHHHHHHHHHHHH-H--TTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred             CCCCCHHHHHHHHHHHHH-H--hCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            379999999999988742 2  22468888877766653     25666654110  112345666666666554 3566


Q ss_pred             EEEEEeCCCCc
Q 046006           78 FVLLLDDKWER   88 (180)
Q Consensus        78 ~LlVlDdv~~~   88 (180)
                      -++|+|-+...
T Consensus       463 ~lVVIDSL~al  473 (1706)
T 3cmw_A          463 DVIVVDSVAAL  473 (1706)
T ss_dssp             SEEEESCSTTC
T ss_pred             CEEEECCHHHh
Confidence            79999998754

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=93.95  E-value=0.023  Score=40.21  Aligned_cols=17  Identities=35%  Similarity=0.628  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||||+.+...+
T Consensus        33 ~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A           33 LSGSGKSTLACALNQML   49 (200)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            57999999999998875

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=93.91  E-value=0.025  Score=39.43  Aligned_cols=17  Identities=35%  Similarity=0.430  Sum_probs=14.8

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        11 ~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A           11 GPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999998764

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=93.90  E-value=0.025  Score=38.72  Aligned_cols=17  Identities=24%  Similarity=0.337  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        10 ~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A           10 ARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999998874

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=93.90  E-value=0.024  Score=39.34  Aligned_cols=17  Identities=24%  Similarity=0.477  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        10 ~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A           10 LPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            57999999999998864

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=93.89  E-value=0.055  Score=38.65  Aligned_cols=35  Identities=26%  Similarity=0.249  Sum_probs=24.3

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEK   40 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~   40 (180)
                      ||+||||+|..++..+.   ..- .++-+......+...
T Consensus        10 GGvGKTT~a~~LA~~la---~~g-~VlliD~D~q~~~~~   44 (209)
T 3cwq_A           10 GGVGKTTTAVHLSAYLA---LQG-ETLLIDGDPNRSATG   44 (209)
T ss_dssp             TTSSHHHHHHHHHHHHH---TTS-CEEEEEECTTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHH---hcC-CEEEEECCCCCCHHH
Confidence            89999999999998864   222 466666665544443

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=93.88  E-value=0.015  Score=40.27  Aligned_cols=17  Identities=29%  Similarity=0.411  Sum_probs=11.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        13 ~~GsGKST~a~~La~~l   29 (183)
T 2vli_A           13 PFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             CC----CHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHhc
Confidence            58999999999998774

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=93.86  E-value=0.025  Score=39.99  Aligned_cols=17  Identities=24%  Similarity=0.435  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        12 ~~GsGKsT~~~~L~~~l   28 (213)
T 2plr_A           12 IDGSGKSSQATLLKDWI   28 (213)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            47999999999999875

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=93.84  E-value=0.025  Score=38.90  Aligned_cols=17  Identities=18%  Similarity=0.579  Sum_probs=14.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+++.+...+
T Consensus        16 ~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A           16 VSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             STTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhh
Confidence            47999999999998763

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=93.84  E-value=0.041  Score=38.75  Aligned_cols=35  Identities=23%  Similarity=0.270  Sum_probs=23.3

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLE   39 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~   39 (180)
                      ||+||||+|..++..+..   .-..++-+......+..
T Consensus        11 gG~GKTt~a~~la~~la~---~g~~vlliD~D~~~~~~   45 (206)
T 4dzz_A           11 GGSGKTTAVINIATALSR---SGYNIAVVDTDPQMSLT   45 (206)
T ss_dssp             TTSSHHHHHHHHHHHHHH---TTCCEEEEECCTTCHHH
T ss_pred             CCccHHHHHHHHHHHHHH---CCCeEEEEECCCCCCHH
Confidence            899999999999888642   22235566665444433

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=93.83  E-value=0.026  Score=40.11  Aligned_cols=17  Identities=41%  Similarity=0.704  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||||++.+...+
T Consensus        20 ~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           20 PSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CTTSCHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHhC
Confidence            58999999999998774

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=93.79  E-value=0.027  Score=38.40  Aligned_cols=17  Identities=18%  Similarity=0.237  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus         8 ~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            8 FMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             CTTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            57999999999998874

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*

Probab=93.79  E-value=0.049  Score=43.85  Aligned_cols=85  Identities=13%  Similarity=0.181  Sum_probs=46.3

Q ss_pred             CCCcHHHHHHHHHccccccc--------CCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcC-hHH---
Q 046006            2 GGVGKTTLLTHINNKFLVSS--------TDFD-CVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKN-SEE---   64 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~-~~~---   64 (180)
                      +|+|||+|+..++++- ...        ++-+ .++++-+++.. ...++.+++...=.....   ......+ ...   
T Consensus       156 ~G~GKt~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~~~r~~~  234 (464)
T 3gqb_B          156 SGLPANEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERILT  234 (464)
T ss_dssp             TTSCHHHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCTHHHHHH
T ss_pred             CCCCchHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCHHHHHHH
Confidence            6999999999998883 221        1222 55666677654 455566665442100000   0011111 111   


Q ss_pred             --HHHHHHHHhC---CCcEEEEEeCCCC
Q 046006           65 --KALEIFRFLS---KKKFVLLLDDKWE   87 (180)
Q Consensus        65 --~~~~l~~~L~---~k~~LlVlDdv~~   87 (180)
                        ..-.+.++++   ++.+|+++||+-.
T Consensus       235 ~~~a~tiAEyfrd~~G~~VLl~~DdlTr  262 (464)
T 3gqb_B          235 PRMALTVAEYLAFEHDYHVLVILTDMTN  262 (464)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence              1233455553   7899999999864

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=93.79  E-value=0.05  Score=39.45  Aligned_cols=34  Identities=29%  Similarity=0.278  Sum_probs=23.0

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQL   38 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~   38 (180)
                      ||+||||+|..++..+..  .. ..++-|......+.
T Consensus         9 GGvGKTt~a~~LA~~la~--~g-~~VlliD~D~~~~l   42 (254)
T 3kjh_A            9 GGVGKTTVAAGLIKIMAS--DY-DKIYAVDGDPDSCL   42 (254)
T ss_dssp             SSHHHHHHHHHHHHHHTT--TC-SCEEEEEECTTSCH
T ss_pred             CCCCHHHHHHHHHHHHHH--CC-CeEEEEeCCCCcCh
Confidence            899999999999988642  22 34566665543443

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A

Probab=93.73  E-value=0.11  Score=42.99  Aligned_cols=39  Identities=23%  Similarity=0.314  Sum_probs=28.5

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCC-HHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQ-LEKIQEIV   45 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i   45 (180)
                      .|+|||+|+..++++     .+-+.++++-+++..+ ..++++++
T Consensus       236 ~g~GKT~L~~~ia~~-----~~~~~~V~~~iGER~~Ev~e~~~~~  275 (588)
T 3mfy_A          236 AGSGKTVTQHQLAKW-----SDAQVVIYIGCGERGNEMTDVLEEF  275 (588)
T ss_dssp             CSHHHHHHHHHHHHH-----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHhc-----cCCCEEEEEEecccHHHHHHHHHHH
Confidence            689999999999876     2346788888887664 45555554

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=93.71  E-value=0.028  Score=39.16  Aligned_cols=17  Identities=35%  Similarity=0.606  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+++.++..+
T Consensus        21 ~~GsGKsT~~~~L~~~l   37 (186)
T 2yvu_A           21 LPGSGKTTIATRLADLL   37 (186)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            58999999999998875

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=93.68  E-value=0.028  Score=39.74  Aligned_cols=17  Identities=29%  Similarity=0.517  Sum_probs=14.8

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||||++.+...+
T Consensus        37 ~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           37 VSGSGKTTIAHGVADET   53 (200)
T ss_dssp             CTTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhh
Confidence            47999999999998763

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=93.66  E-value=0.028  Score=41.66  Aligned_cols=17  Identities=29%  Similarity=0.577  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        12 ~pGSGKSTla~~La~~L   28 (260)
T 3a4m_A           12 LPGVGKSTFSKNLAKIL   28 (260)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            58999999999998763

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=93.64  E-value=0.029  Score=39.18  Aligned_cols=17  Identities=35%  Similarity=0.391  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        17 ~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A           17 GPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999998774

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=93.64  E-value=0.029  Score=39.17  Aligned_cols=16  Identities=31%  Similarity=0.480  Sum_probs=14.5

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      ++|+||||+|+.+...
T Consensus        18 ~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           18 TPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             STTSSHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHh
Confidence            5799999999999876

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=93.60  E-value=0.03  Score=39.55  Aligned_cols=17  Identities=29%  Similarity=0.399  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        28 ~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           28 PPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999998874

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=93.60  E-value=0.027  Score=40.66  Aligned_cols=17  Identities=35%  Similarity=0.567  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        15 ~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A           15 APGSGKGTVSSRITTHF   31 (227)
T ss_dssp             CTTSSHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            58999999999998774

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=93.59  E-value=0.031  Score=38.93  Aligned_cols=17  Identities=24%  Similarity=0.417  Sum_probs=14.7

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||||++.+....
T Consensus        13 psGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A           13 AHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CTTSSHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHhhC
Confidence            47999999999998764

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=93.57  E-value=0.031  Score=39.18  Aligned_cols=17  Identities=29%  Similarity=0.372  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        20 ~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           20 GPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            48999999999998874

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=93.56  E-value=0.028  Score=43.21  Aligned_cols=36  Identities=19%  Similarity=0.362  Sum_probs=29.6

Q ss_pred             eEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHH
Q 046006          106 NFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALI  141 (180)
Q Consensus       106 ~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~  141 (180)
                      ...+++.+.++-.+++.+.           .+..|++.+.|.|-.+.
T Consensus       174 ~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~  220 (334)
T 1in4_A          174 ILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAI  220 (334)
T ss_dssp             EEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHH
T ss_pred             eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHH
Confidence            4778999999999998876           67888999999986543

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=93.54  E-value=0.027  Score=40.18  Aligned_cols=17  Identities=35%  Similarity=0.483  Sum_probs=14.8

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus         8 ~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            8 LPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             STTSSHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999998764

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=93.53  E-value=0.032  Score=38.96  Aligned_cols=16  Identities=31%  Similarity=0.490  Sum_probs=13.8

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      ++|+|||||++.+...
T Consensus        10 ~~GaGKSTl~~~L~~~   25 (189)
T 2bdt_A           10 PAGVGKSTTCKRLAAQ   25 (189)
T ss_dssp             STTSSHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHhcc
Confidence            4799999999999763

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=93.48  E-value=0.042  Score=40.10  Aligned_cols=31  Identities=29%  Similarity=0.274  Sum_probs=20.7

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK   34 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~   34 (180)
                      .||+||||+|..++....  ...++ +..+.+..
T Consensus        14 kgGvGKTt~a~~la~~l~--~~G~~-V~v~d~D~   44 (228)
T 2r8r_A           14 APGVGKTYAMLQAAHAQL--RQGVR-VMAGVVET   44 (228)
T ss_dssp             STTSSHHHHHHHHHHHHH--HTTCC-EEEEECCC
T ss_pred             CCCCcHHHHHHHHHHHHH--HCCCC-EEEEEeCC
Confidence            389999999999988853  23344 34444443

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=93.48  E-value=0.13  Score=41.36  Aligned_cols=40  Identities=15%  Similarity=0.180  Sum_probs=25.4

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIV   45 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i   45 (180)
                      +|+||||||..++.... .. .-..++|++...  +..++...+
T Consensus       212 pG~GKTtl~l~ia~~~~-~~-~g~~Vl~~s~E~--s~~~l~~r~  251 (454)
T 2r6a_A          212 PSVGKTAFALNIAQNVA-TK-TNENVAIFSLEM--SAQQLVMRM  251 (454)
T ss_dssp             TTSCHHHHHHHHHHHHH-HH-SSCCEEEEESSS--CHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH-Hh-CCCcEEEEECCC--CHHHHHHHH
Confidence            79999999999988753 11 112467766443  345555544

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=93.44  E-value=0.033  Score=39.98  Aligned_cols=17  Identities=29%  Similarity=0.520  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.++..+
T Consensus        12 ~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A           12 PPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            58999999999998875

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=93.44  E-value=0.053  Score=43.81  Aligned_cols=85  Identities=13%  Similarity=0.119  Sum_probs=47.4

Q ss_pred             CCCcHHHHHHHHHcccccccCC--CCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChHH------HHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTD--FDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSEE------KALEI   69 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~------~~~~l   69 (180)
                      +|+|||+|+..++++. ...+.  =+.++++-+++.. ...++.+++...=.....   ......+...      ..-.+
T Consensus       161 ~G~GKt~Ll~~Ia~~~-~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~~~a~ti  239 (469)
T 2c61_A          161 SGLPHNEIALQIARQA-SVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTA  239 (469)
T ss_dssp             TTSCHHHHHHHHHHHC-BCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH-hhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHHHHHHHH
Confidence            6999999999999883 22111  1356677677654 456667666653111100   0011111111      22334


Q ss_pred             HHHhC---CCcEEEEEeCCCC
Q 046006           70 FRFLS---KKKFVLLLDDKWE   87 (180)
Q Consensus        70 ~~~L~---~k~~LlVlDdv~~   87 (180)
                      .++++   ++.+|+++||+..
T Consensus       240 AEyfrdd~G~dVLl~~DsltR  260 (469)
T 2c61_A          240 AEYLAYEHGMHVLVILTDITN  260 (469)
T ss_dssp             HHHHHHHHCCEEEEEEECHHH
T ss_pred             HHHHHHhcCCeEEEEEeCHHH
Confidence            44543   6899999999643

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=93.41  E-value=0.029  Score=40.03  Aligned_cols=17  Identities=35%  Similarity=0.546  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus         8 ~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            8 LPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999998764

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=93.41  E-value=0.027  Score=40.49  Aligned_cols=17  Identities=29%  Similarity=0.333  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.++..+
T Consensus        13 ~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A           13 APASGKGTQCELIKTKY   29 (222)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999998875

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=93.38  E-value=0.026  Score=40.23  Aligned_cols=83  Identities=18%  Similarity=0.103  Sum_probs=40.3

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC---CCCHHHHHHHHHHHhC-CCCCCCCCCc-------ChHHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK---DLQLEKIQEIVGKKVG-LLDGDSWKNK-------NSEEKALEIF   70 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~-~~~~~~~~~~-------~~~~~~~~l~   70 (180)
                      .|.||||+|..++-+.  ....+ .+.++....   ......++..+.-.+. ....-.....       .........+
T Consensus        37 ~GkGKTTaA~GlalRA--~g~G~-rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l~~a~  113 (196)
T 1g5t_A           37 NGKGKTTAAFGTAARA--VGHGK-NVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVWQHGK  113 (196)
T ss_dssp             SSSCHHHHHHHHHHHH--HHTTC-CEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH--HHCCC-eEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHHHHHH
Confidence            5899999999988773  22223 345554332   2333344444310000 0000001111       1223345556


Q ss_pred             HHhCCC-cEEEEEeCCCC
Q 046006           71 RFLSKK-KFVLLLDDKWE   87 (180)
Q Consensus        71 ~~L~~k-~~LlVlDdv~~   87 (180)
                      +.+.+. -=|||||++..
T Consensus       114 ~~l~~~~yDlvILDEi~~  131 (196)
T 1g5t_A          114 RMLADPLLDMVVLDELTY  131 (196)
T ss_dssp             HHTTCTTCSEEEEETHHH
T ss_pred             HHHhcCCCCEEEEeCCCc
Confidence            666544 45999999744

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=93.38  E-value=0.034  Score=38.73  Aligned_cols=17  Identities=29%  Similarity=0.454  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus         8 ~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            8 IDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             STTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            47999999999998865

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=93.38  E-value=0.032  Score=41.18  Aligned_cols=34  Identities=29%  Similarity=0.224  Sum_probs=24.3

Q ss_pred             ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCChH
Q 046006          105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLPL  138 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~PL  138 (180)
                      ..+.++..+.++-.+++...          ....+++.+.|.|-
T Consensus       176 ~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g  219 (268)
T 2r62_A          176 RQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAG  219 (268)
T ss_dssp             CCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCH
T ss_pred             eEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCH
Confidence            45778888888888888776          24556666777654

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=93.35  E-value=0.037  Score=38.93  Aligned_cols=17  Identities=29%  Similarity=0.333  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+++.+...+
T Consensus        12 ~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A           12 LDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CTTSSHHHHHHHHHHTS
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            47999999999998875

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=93.34  E-value=0.077  Score=42.02  Aligned_cols=33  Identities=27%  Similarity=0.331  Sum_probs=20.6

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD   35 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~   35 (180)
                      +|+|||+|+..+++........+. ++++-+++.
T Consensus       184 ~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER  216 (427)
T 3l0o_A          184 PKAGKTTILKEIANGIAENHPDTI-RIILLIDER  216 (427)
T ss_dssp             TTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred             CCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence            699999999999887421112233 245556653

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=93.31  E-value=0.025  Score=42.67  Aligned_cols=17  Identities=35%  Similarity=0.395  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        41 ~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           41 QPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             CTTSCTHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999998764

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A

Probab=93.31  E-value=0.14  Score=41.71  Aligned_cols=81  Identities=14%  Similarity=0.217  Sum_probs=44.5

Q ss_pred             CCCcHHHHHH-HHHcccccccCCCCe-EEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChHH------HHHHH
Q 046006            2 GGVGKTTLLT-HINNKFLVSSTDFDC-VIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSEE------KALEI   69 (180)
Q Consensus         2 gGiGKTtLA~-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~------~~~~l   69 (180)
                      .|+|||+||. .+.++     .+-+. ++++-+++.. ...++.+.+.+.=.....   ......+...      ..-.+
T Consensus       171 ~g~GKT~l~l~~I~n~-----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~~~a~ti  245 (513)
T 3oaa_A          171 RQTGKTALAIDAIINQ-----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYAGCAM  245 (513)
T ss_dssp             SSSSHHHHHHHHHHTT-----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCcchHHHHHHHhh-----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHHHHHHHH
Confidence            5999999974 56665     23343 5678888765 455666665443111100   0011111111      11223


Q ss_pred             HHHh--CCCcEEEEEeCCCC
Q 046006           70 FRFL--SKKKFVLLLDDKWE   87 (180)
Q Consensus        70 ~~~L--~~k~~LlVlDdv~~   87 (180)
                      -+++  +++..|+++||+..
T Consensus       246 AEyfrd~G~dVLli~Dsltr  265 (513)
T 3oaa_A          246 GEYFRDRGEDALIIYDDLSK  265 (513)
T ss_dssp             HHHHHHTTCEEEEEEETHHH
T ss_pred             HHHHHhcCCCEEEEecChHH
Confidence            3333  58999999999864

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=93.30  E-value=0.035  Score=40.72  Aligned_cols=34  Identities=15%  Similarity=0.233  Sum_probs=23.7

Q ss_pred             cceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006          104 NKNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP  137 (180)
Q Consensus       104 ~~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P  137 (180)
                      ...+.++..+.++-.+++...          ....+++.+.|.-
T Consensus       178 ~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~  221 (254)
T 1ixz_A          178 DRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV  221 (254)
T ss_dssp             CEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCC
T ss_pred             CeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCC
Confidence            346778888888878887765          3556777777653

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=93.30  E-value=0.12  Score=42.17  Aligned_cols=81  Identities=12%  Similarity=0.155  Sum_probs=45.0

Q ss_pred             CCCcHHHHHH-HHHcccccccCCCCe-EEEEEeCCCC-CHHHHHHHHHHHhCCCC---CCCCCCcChHH------HHHHH
Q 046006            2 GGVGKTTLLT-HINNKFLVSSTDFDC-VIWIVVSKDL-QLEKIQEIVGKKVGLLD---GDSWKNKNSEE------KALEI   69 (180)
Q Consensus         2 gGiGKTtLA~-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~---~~~~~~~~~~~------~~~~l   69 (180)
                      +|+|||+||. .+.++ .    .-+. ++++-+++.. ...++.+.+...=....   .......+...      ..-.+
T Consensus       184 ~g~GKT~Lal~~I~~~-~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a~ti  258 (515)
T 2r9v_A          184 RQTGKTAIAIDTIINQ-K----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPYAGCAM  258 (515)
T ss_dssp             TTSSHHHHHHHHHHTT-T----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHh-h----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            6999999965 66666 2    3454 4677788765 45566666654211100   00011111111      12233


Q ss_pred             HHHh--CCCcEEEEEeCCCC
Q 046006           70 FRFL--SKKKFVLLLDDKWE   87 (180)
Q Consensus        70 ~~~L--~~k~~LlVlDdv~~   87 (180)
                      .+++  +++.+|+++||+..
T Consensus       259 AEyfrd~G~dVLli~DslTr  278 (515)
T 2r9v_A          259 GEYFAYSGRDALVVYDDLSK  278 (515)
T ss_dssp             HHHHHTTTCEEEEEEETHHH
T ss_pred             HHHHHHcCCcEEEEeccHHH
Confidence            4444  57899999999864

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=93.29  E-value=0.032  Score=39.37  Aligned_cols=17  Identities=24%  Similarity=0.339  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.++..+
T Consensus        23 ~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           23 GPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             STTSSHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            47999999999998774

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*

Probab=93.25  E-value=0.24  Score=40.37  Aligned_cols=81  Identities=12%  Similarity=0.233  Sum_probs=43.2

Q ss_pred             CCCcHHHHHH-HHHcccccccCCCCe-EEEEEeCCCC-CHHHHHHHHHHHhCC-------CCCCCCCCcC--hHHHHHHH
Q 046006            2 GGVGKTTLLT-HINNKFLVSSTDFDC-VIWIVVSKDL-QLEKIQEIVGKKVGL-------LDGDSWKNKN--SEEKALEI   69 (180)
Q Consensus         2 gGiGKTtLA~-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~--~~~~~~~l   69 (180)
                      +|+|||+||. .+.++ .    .-+. ++++-+++.. ...++.+.+...=..       .....+....  .....-.+
T Consensus       172 ~g~GKT~Lal~~I~~~-~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a~ti  246 (507)
T 1fx0_A          172 RQTGKTAVATDTILNQ-Q----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTGAAL  246 (507)
T ss_dssp             SSSSHHHHHHHHHHTC-C----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHh-h----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHHHHHHHH
Confidence            6999999965 66666 2    2453 5677777755 445555555432110       0000111111  11122233


Q ss_pred             HHHh--CCCcEEEEEeCCCC
Q 046006           70 FRFL--SKKKFVLLLDDKWE   87 (180)
Q Consensus        70 ~~~L--~~k~~LlVlDdv~~   87 (180)
                      .+++  +++.+|+++||+..
T Consensus       247 AEyfrd~G~dVLli~Dsltr  266 (507)
T 1fx0_A          247 AEYFMYRERHTLIIYDDLSK  266 (507)
T ss_dssp             HHHHHHTTCEEEEEEECHHH
T ss_pred             HHHHHHcCCcEEEEEecHHH
Confidence            3333  58999999999754

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=93.24  E-value=0.21  Score=42.66  Aligned_cols=19  Identities=5%  Similarity=0.081  Sum_probs=15.9

Q ss_pred             eEeecCCChhhhHHHHHHH
Q 046006          106 NFKVECLSDNDAWELLRQK  124 (180)
Q Consensus       106 ~~~l~~L~~~~a~~Lf~~~  124 (180)
                      .+.+++.+.++..+++...
T Consensus       343 ~i~v~~p~~~e~~~il~~l  361 (758)
T 1r6b_X          343 KIDITEPSIEETVQIINGL  361 (758)
T ss_dssp             EEECCCCCHHHHHHHHHHH
T ss_pred             EEEcCCCCHHHHHHHHHHH
Confidence            6889999999998888764

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=93.21  E-value=0.037  Score=38.42  Aligned_cols=17  Identities=35%  Similarity=0.393  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        14 ~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A           14 GPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999998874

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=93.15  E-value=0.038  Score=39.14  Aligned_cols=24  Identities=13%  Similarity=0.209  Sum_probs=18.0

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCe
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDC   26 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~   26 (180)
                      ++|+||||+|+.+...+.  ..+++.
T Consensus        18 ~~GsGKST~~~~L~~~l~--~~~~~~   41 (212)
T 2wwf_A           18 LDRSGKSTQSKLLVEYLK--NNNVEV   41 (212)
T ss_dssp             STTSSHHHHHHHHHHHHH--HTTCCE
T ss_pred             CCCCCHHHHHHHHHHHHH--HcCCcE
Confidence            479999999999988753  134555

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=93.12  E-value=0.032  Score=40.01  Aligned_cols=17  Identities=29%  Similarity=0.454  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        13 ~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A           13 APGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999998875

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=93.04  E-value=0.04  Score=38.80  Aligned_cols=17  Identities=35%  Similarity=0.354  Sum_probs=14.8

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+++.+...+
T Consensus        14 ~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A           14 PSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             STTSCHHHHHHHHHHCT
T ss_pred             CCCCCHHHHHHHHHHhh
Confidence            47999999999998774

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=92.96  E-value=0.043  Score=38.72  Aligned_cols=15  Identities=27%  Similarity=0.339  Sum_probs=13.6

Q ss_pred             CCCCcHHHHHHHHHc
Q 046006            1 MGGVGKTTLLTHINN   15 (180)
Q Consensus         1 mgGiGKTtLA~~~~~   15 (180)
                      ++|+||||+++.+..
T Consensus         9 ~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            9 NIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CTTSSHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHH
Confidence            479999999999987

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=92.91  E-value=0.046  Score=38.50  Aligned_cols=17  Identities=29%  Similarity=0.516  Sum_probs=14.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||||++.+....
T Consensus        15 p~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A           15 PSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CTTSCHHHHHHHHHHHS
T ss_pred             cCCCCHHHHHHHHHhhC
Confidence            47999999999998753

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=92.90  E-value=0.043  Score=38.88  Aligned_cols=17  Identities=18%  Similarity=0.284  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        17 ~~GsGKsT~~~~L~~~l   33 (215)
T 1nn5_A           17 VDRAGKSTQSRKLVEAL   33 (215)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            47999999999999875

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=92.88  E-value=0.044  Score=39.15  Aligned_cols=17  Identities=29%  Similarity=0.272  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus         8 ~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            8 APVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999998874

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=92.84  E-value=0.037  Score=40.13  Aligned_cols=17  Identities=29%  Similarity=0.450  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.++..+
T Consensus        24 ~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           24 PPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999998875

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=92.80  E-value=0.049  Score=38.83  Aligned_cols=17  Identities=29%  Similarity=0.303  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||||++.+...+
T Consensus        16 psGsGKsTl~~~L~~~~   32 (208)
T 3tau_A           16 PSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CTTSCHHHHHHHHHHST
T ss_pred             cCCCCHHHHHHHHHhhC
Confidence            47999999999998775

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=92.78  E-value=0.048  Score=39.88  Aligned_cols=17  Identities=35%  Similarity=0.509  Sum_probs=14.5

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||||++.++..+
T Consensus        35 ~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           35 PPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999999553

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=92.77  E-value=0.047  Score=39.13  Aligned_cols=17  Identities=29%  Similarity=0.440  Sum_probs=14.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        13 ~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A           13 PSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999998764

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=92.76  E-value=0.094  Score=40.15  Aligned_cols=17  Identities=41%  Similarity=0.489  Sum_probs=14.8

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++..+.
T Consensus        23 GGvGKTTvA~~LA~~lA   39 (324)
T 3zq6_A           23 GGVGKTTISAATALWMA   39 (324)
T ss_dssp             TTSSHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHH
Confidence            89999999999887753

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=92.73  E-value=0.044  Score=38.71  Aligned_cols=17  Identities=35%  Similarity=0.643  Sum_probs=14.8

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||||++.+..+.
T Consensus         9 PSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            9 PSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CTTSSHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHhC
Confidence            58999999999998764

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=92.67  E-value=0.053  Score=37.89  Aligned_cols=17  Identities=47%  Similarity=0.688  Sum_probs=14.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||||++.++..+
T Consensus         8 ~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            8 EPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999998764

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=92.65  E-value=0.05  Score=39.24  Aligned_cols=17  Identities=29%  Similarity=0.429  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus         8 ~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            8 PNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             CTTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999998874

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=92.64  E-value=0.052  Score=38.40  Aligned_cols=15  Identities=33%  Similarity=0.364  Sum_probs=13.4

Q ss_pred             CCCCcHHHHHHHHHc
Q 046006            1 MGGVGKTTLLTHINN   15 (180)
Q Consensus         1 mgGiGKTtLA~~~~~   15 (180)
                      ++|+||||+++.+..
T Consensus        10 ~~GsGKST~~~~La~   24 (206)
T 1jjv_A           10 GIGSGKTTIANLFTD   24 (206)
T ss_dssp             STTSCHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHH
Confidence            479999999999976

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=92.63  E-value=0.045  Score=37.76  Aligned_cols=15  Identities=27%  Similarity=0.344  Sum_probs=12.2

Q ss_pred             CCCCcHHHHHHHHHc
Q 046006            1 MGGVGKTTLLTHINN   15 (180)
Q Consensus         1 mgGiGKTtLA~~~~~   15 (180)
                      ++|+|||||++.++.
T Consensus        17 ~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A           17 SSGSGKSTFAKKHFK   31 (171)
T ss_dssp             CTTSCHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHcc
Confidence            479999999997543

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B

Probab=92.59  E-value=0.2  Score=40.79  Aligned_cols=81  Identities=16%  Similarity=0.193  Sum_probs=45.3

Q ss_pred             CCCcHHHHHH-HHHcccccccCCCCe-EEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChHHH------HHHH
Q 046006            2 GGVGKTTLLT-HINNKFLVSSTDFDC-VIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSEEK------ALEI   69 (180)
Q Consensus         2 gGiGKTtLA~-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~------~~~l   69 (180)
                      +|+|||+||. .+.++ .    .-+. ++++-+++.. ...++.+.+...=.....   ......+....      .-.+
T Consensus       171 ~g~GKT~Lal~~I~~~-~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~a~ti  245 (502)
T 2qe7_A          171 RQTGKTTIAIDTIINQ-K----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPYAGCAM  245 (502)
T ss_dssp             SSSCHHHHHHHHHHGG-G----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHh-h----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            6999999965 66666 2    3454 4677788765 455666666543221100   01111111111      1234


Q ss_pred             HHHh--CCCcEEEEEeCCCC
Q 046006           70 FRFL--SKKKFVLLLDDKWE   87 (180)
Q Consensus        70 ~~~L--~~k~~LlVlDdv~~   87 (180)
                      .+++  +++.+|+++||+..
T Consensus       246 AEyfrd~G~dVLl~~Dsltr  265 (502)
T 2qe7_A          246 GEYFMYKGKHALVVYDDLSK  265 (502)
T ss_dssp             HHHHHTTTCEEEEEEECHHH
T ss_pred             HHHHHHcCCcEEEEEecHHH
Confidence            4444  57899999999864

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=92.58  E-value=0.089  Score=38.77  Aligned_cols=29  Identities=17%  Similarity=0.401  Sum_probs=20.0

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVS   33 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~   33 (180)
                      ||+||||+|..++..+..  .. ..++-|...
T Consensus        10 GGvGKTT~a~nLA~~la~--~G-~~VlliD~D   38 (269)
T 1cp2_A           10 GGIGKSTTTQNLTSGLHA--MG-KTIMVVGCD   38 (269)
T ss_dssp             TTSSHHHHHHHHHHHHHT--TT-CCEEEEEEC
T ss_pred             CCCcHHHHHHHHHHHHHH--CC-CcEEEEcCC
Confidence            899999999999888641  22 235555543

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=92.53  E-value=0.054  Score=37.41  Aligned_cols=17  Identities=29%  Similarity=0.540  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+++.+...+
T Consensus        13 ~~GsGKST~~~~L~~~l   29 (179)
T 2pez_A           13 LSGAGKTTVSMALEEYL   29 (179)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            47999999999998864

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=92.53  E-value=0.11  Score=40.15  Aligned_cols=17  Identities=41%  Similarity=0.575  Sum_probs=14.9

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++..+.
T Consensus        25 GGvGKTt~a~~lA~~la   41 (334)
T 3iqw_A           25 GGVGKTTTSCSLAIQLA   41 (334)
T ss_dssp             TTSSHHHHHHHHHHHHT
T ss_pred             CCccHHHHHHHHHHHHH
Confidence            89999999999887753

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=92.50  E-value=0.052  Score=40.43  Aligned_cols=33  Identities=15%  Similarity=0.218  Sum_probs=23.5

Q ss_pred             ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006          105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP  137 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P  137 (180)
                      ..+.++..+.++-.+++..+          ....++..+.|..
T Consensus       203 ~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~  245 (278)
T 1iy2_A          203 RQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV  245 (278)
T ss_dssp             CEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCC
T ss_pred             eEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCC
Confidence            46778888888888887765          3556777777654

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=92.50  E-value=0.044  Score=38.99  Aligned_cols=17  Identities=29%  Similarity=0.436  Sum_probs=14.8

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||||++.+...+
T Consensus        30 ~sGsGKSTl~~~l~~~~   46 (208)
T 3c8u_A           30 APGSGKSTLSNPLAAAL   46 (208)
T ss_dssp             CTTSCTHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            47999999999998775

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=92.45  E-value=0.045  Score=40.11  Aligned_cols=17  Identities=24%  Similarity=0.298  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        37 ~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           37 APGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999998764

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=92.42  E-value=0.053  Score=39.76  Aligned_cols=17  Identities=35%  Similarity=0.470  Sum_probs=14.7

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .||+||||++..++..+
T Consensus        22 kgGvGKTTl~~~La~~l   38 (262)
T 1yrb_A           22 TAGSGKTTLTGEFGRYL   38 (262)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            38999999999998764

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=92.38  E-value=0.032  Score=41.10  Aligned_cols=17  Identities=35%  Similarity=0.530  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        40 ~~GsGKSTla~~L~~~l   56 (253)
T 2p5t_B           40 QSGAGKTTIHRIKQKEF   56 (253)
T ss_dssp             CGGGTTHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHhc
Confidence            47999999999998874

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=92.36  E-value=0.055  Score=40.54  Aligned_cols=17  Identities=29%  Similarity=0.386  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||++|+.+++..
T Consensus        58 ~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           58 PTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999999874

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=92.35  E-value=0.057  Score=38.49  Aligned_cols=17  Identities=24%  Similarity=0.552  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        33 ~~GsGKsT~~~~l~~~l   49 (211)
T 1m7g_A           33 LSASGKSTLAVELEHQL   49 (211)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999998875

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=92.35  E-value=0.059  Score=38.15  Aligned_cols=17  Identities=29%  Similarity=0.505  Sum_probs=14.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        29 ~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           29 VTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             STTSSHHHHHHHHHTTS
T ss_pred             CCCCCHHHHHHHHHHhc
Confidence            47999999999998764

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=92.23  E-value=0.064  Score=37.60  Aligned_cols=16  Identities=25%  Similarity=0.262  Sum_probs=13.9

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      ++|+||||+|+.+...
T Consensus        16 ~~GsGKST~~~~La~~   31 (203)
T 1uf9_A           16 NIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CTTSCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHC
Confidence            4799999999999765

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=92.21  E-value=0.059  Score=40.48  Aligned_cols=16  Identities=31%  Similarity=0.341  Sum_probs=14.3

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      ++|+||||+|+.+...
T Consensus        10 ~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A           10 CPGSGKSTWAREFIAK   25 (301)
T ss_dssp             CTTSSHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHh
Confidence            5899999999999874

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=92.16  E-value=0.46  Score=36.51  Aligned_cols=48  Identities=23%  Similarity=0.330  Sum_probs=27.9

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGL   51 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~   51 (180)
                      ++|+||||+++.++..+. . ... .+.+..... .....+.+....+.++.
T Consensus       137 ~nGaGKTTll~~Lag~l~-~-~~g-~V~l~g~D~~r~~a~eql~~~~~~~gv  185 (328)
T 3e70_C          137 FNGSGKTTTIAKLANWLK-N-HGF-SVVIAASDTFRAGAIEQLEEHAKRIGV  185 (328)
T ss_dssp             CTTSSHHHHHHHHHHHHH-H-TTC-CEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHHHH-h-cCC-EEEEEeecccccchHHHHHHHHHHcCc
Confidence            479999999999988753 1 222 233333322 23444555556666664

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=91.94  E-value=0.058  Score=39.05  Aligned_cols=41  Identities=15%  Similarity=0.126  Sum_probs=24.0

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIV   45 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i   45 (180)
                      .||+|||+||.+++.+.. . +.-..+++++..  .+..++...+
T Consensus        38 ~pG~GKT~l~l~~~~~~~-~-~~~~~v~~~s~E--~~~~~~~~~~   78 (251)
T 2zts_A           38 GTGTGKTTFAAQFIYKGA-E-EYGEPGVFVTLE--ERARDLRREM   78 (251)
T ss_dssp             CTTSSHHHHHHHHHHHHH-H-HHCCCEEEEESS--SCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH-H-hcCCCceeeccc--CCHHHHHHHH
Confidence            389999999999765421 1 222345666544  3445554444

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=91.90  E-value=0.32  Score=45.35  Aligned_cols=79  Identities=16%  Similarity=0.071  Sum_probs=55.0

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC---CCcChHHHHHHHHHHhC-CC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSW---KNKNSEEKALEIFRFLS-KK   76 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~~~~l~~~L~-~k   76 (180)
                      +.|+||||||.++...-.   ..=...+|+......+..-     ++.++.+ ....   .+.+.++....+...++ +.
T Consensus      1439 ~~~sGkttl~~~~~a~~~---~~g~~~~~i~~e~~~~~~~-----~~~~Gv~-~~~l~~~~p~~~e~~l~~~~~~~~s~~ 1509 (1706)
T 3cmw_A         1439 PESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVD-IDNLLCSQPDTGEQALEICDALARSGA 1509 (1706)
T ss_dssp             STTSSHHHHHHHHHHHHH---HTTCCEEEECTTSCCCHHH-----HHHTTCC-GGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHH---hcCCeEEEEecCCCCCHHH-----HHHcCCC-HHHeEEeCCCcHHHHHHHHHHHHHcCC
Confidence            368999999999987622   3345678888777666654     7788765 2221   34555777777777775 56


Q ss_pred             cEEEEEeCCCCc
Q 046006           77 KFVLLLDDKWER   88 (180)
Q Consensus        77 ~~LlVlDdv~~~   88 (180)
                      .-++|+|-|...
T Consensus      1510 ~~~vvvDsv~al 1521 (1706)
T 3cmw_A         1510 VDVIVVDSVAAL 1521 (1706)
T ss_dssp             CSEEEESCSTTC
T ss_pred             CCEEEEccHHhC
Confidence            779999998664

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=91.90  E-value=0.071  Score=37.78  Aligned_cols=17  Identities=29%  Similarity=0.327  Sum_probs=14.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||++.+...+
T Consensus        14 ~~GsGKSTl~~~l~~~~   30 (211)
T 3asz_A           14 GTASGKTTLAQALARTL   30 (211)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            36999999999998864

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=91.87  E-value=0.067  Score=39.47  Aligned_cols=34  Identities=24%  Similarity=0.376  Sum_probs=23.3

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLE   39 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~   39 (180)
                      ||+||||+|..++..+.  + . ..++-|......+..
T Consensus        37 GGvGKTT~a~~LA~~la--~-g-~~VlliD~D~~~~~~   70 (267)
T 3k9g_A           37 GGVGKSTSAIILATLLS--K-N-NKVLLIDMDTQASIT   70 (267)
T ss_dssp             SSSCHHHHHHHHHHHHT--T-T-SCEEEEEECTTCHHH
T ss_pred             CCchHHHHHHHHHHHHH--C-C-CCEEEEECCCCCCHH
Confidence            89999999999998863  2 2 345666655444333

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=91.84  E-value=0.035  Score=39.40  Aligned_cols=16  Identities=38%  Similarity=0.748  Sum_probs=14.2

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      +|+||||+|+.+...+
T Consensus         9 ~GsGKsTl~~~L~~~l   24 (214)
T 1gtv_A            9 DGAGKRTLVEKLSGAF   24 (214)
T ss_dssp             EEEEHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            6999999999998775

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=91.79  E-value=0.07  Score=38.64  Aligned_cols=30  Identities=17%  Similarity=0.152  Sum_probs=20.4

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVS   33 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~   33 (180)
                      ||+||||+|..++..+..  .+=..++.|...
T Consensus        14 GGvGKTt~a~~LA~~la~--~~g~~VlliD~D   43 (245)
T 3ea0_A           14 GGDGGSCIAANFAFALSQ--EPDIHVLAVDIS   43 (245)
T ss_dssp             TTSSHHHHHHHHHHHHTT--STTCCEEEEECC
T ss_pred             CCcchHHHHHHHHHHHHh--CcCCCEEEEECC
Confidence            899999999999888642  102235556544

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=91.76  E-value=0.084  Score=38.90  Aligned_cols=17  Identities=18%  Similarity=0.265  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||++|+.+++..
T Consensus        37 ~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A           37 ERGTGKELIASRLHYLS   53 (265)
T ss_dssp             CTTSCHHHHHHHHHHTS
T ss_pred             CCCCcHHHHHHHHHHhc
Confidence            37999999999999874

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=91.71  E-value=0.13  Score=37.54  Aligned_cols=30  Identities=30%  Similarity=0.271  Sum_probs=20.7

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK   34 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~   34 (180)
                      ||+||||+|..++..+..  ... .++-|....
T Consensus        12 gGvGKTt~a~~LA~~la~--~g~-~VlliD~D~   41 (260)
T 3q9l_A           12 GGVGKTTSSAAIATGLAQ--KGK-KTVVIDFAI   41 (260)
T ss_dssp             TTSSHHHHHHHHHHHHHH--TTC-CEEEEECCC
T ss_pred             CCCcHHHHHHHHHHHHHh--CCC-cEEEEECCC
Confidence            899999999999888642  222 355565543

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=91.68  E-value=0.18  Score=35.75  Aligned_cols=81  Identities=16%  Similarity=0.079  Sum_probs=39.0

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CCCcChHHHHHHHHHHhCCCcE
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDS---WKNKNSEEKALEIFRFLSKKKF   78 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~l~~~L~~k~~   78 (180)
                      -|+||||.++.+++.+..  ...+ ++...-.......+.++.++..-... ...   .-..+-.+....+...|.... 
T Consensus         9 DGsGKsTq~~~L~~~L~~--~g~~-v~~treP~~t~~~~~ir~~l~~~~~~-~~~~~ll~~a~r~~~~~~I~~~L~~g~-   83 (197)
T 3hjn_A            9 DGSGKSTQIQLLAQYLEK--RGKK-VILKREPGGTETGEKIRKILLEEEVT-PKAELFLFLASRNLLVTEIKQYLSEGY-   83 (197)
T ss_dssp             TTSSHHHHHHHHHHHHHH--TTCC-EEEEESSCSSHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred             CCCCHHHHHHHHHHHHHH--CCCc-EEEEECCCCCcHHHHHHHHhhcccCC-hHHHHHHHHHHHHHHHHHHHHHHHCCC-
Confidence            599999999999988631  2223 33333222333444444444332111 000   000112233455566665554 


Q ss_pred             EEEEeCCCC
Q 046006           79 VLLLDDKWE   87 (180)
Q Consensus        79 LlVlDdv~~   87 (180)
                      .+|.|--..
T Consensus        84 ~Vi~DRy~~   92 (197)
T 3hjn_A           84 AVLLDRYTD   92 (197)
T ss_dssp             EEEEESCHH
T ss_pred             eEEecccch
Confidence            466676443

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=91.68  E-value=0.063  Score=38.50  Aligned_cols=17  Identities=24%  Similarity=0.257  Sum_probs=15.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +||+||||.|+.++..+
T Consensus         8 pPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            8 PPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            58999999999999885

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=91.64  E-value=0.63  Score=37.99  Aligned_cols=17  Identities=29%  Similarity=0.503  Sum_probs=14.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+||||++..++..+
T Consensus       109 ~~GvGKTTl~~kLA~~l  125 (504)
T 2j37_W          109 LQGSGKTTTCSKLAYYY  125 (504)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            37999999999998765

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=91.64  E-value=0.074  Score=41.24  Aligned_cols=17  Identities=29%  Similarity=0.358  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||++|+.+++..
T Consensus        59 ppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           59 PTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CTTSSHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            48999999999999874

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=91.60  E-value=0.074  Score=39.79  Aligned_cols=29  Identities=21%  Similarity=0.292  Sum_probs=20.0

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVS   33 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~   33 (180)
                      ||+||||+|..++..+..  ... .++-|...
T Consensus        11 GGvGKTT~a~nLA~~La~--~G~-rVlliD~D   39 (289)
T 2afh_E           11 GGIGKSTTTQNLVAALAE--MGK-KVMIVGCD   39 (289)
T ss_dssp             TTSSHHHHHHHHHHHHHH--TTC-CEEEEEEC
T ss_pred             CcCcHHHHHHHHHHHHHH--CCC-eEEEEecC
Confidence            899999999999888642  222 34555544

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=91.53  E-value=0.075  Score=39.22  Aligned_cols=17  Identities=35%  Similarity=0.675  Sum_probs=15.1

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++..+.
T Consensus        28 GGvGKTT~a~nLA~~la   44 (262)
T 2ph1_A           28 GGVGKSTVTALLAVHYA   44 (262)
T ss_dssp             SCTTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            89999999999988764

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=91.52  E-value=0.12  Score=40.15  Aligned_cols=17  Identities=41%  Similarity=0.554  Sum_probs=14.7

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++..+.
T Consensus        35 GGvGKTTvA~~LA~~lA   51 (349)
T 3ug7_A           35 GGVGKTTMSAATGVYLA   51 (349)
T ss_dssp             SSTTHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHH
Confidence            89999999999887753

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=91.52  E-value=0.079  Score=39.18  Aligned_cols=17  Identities=35%  Similarity=0.415  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+++.+...+
T Consensus        56 ~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           56 MMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             STTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhc
Confidence            58999999999998864

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=91.52  E-value=0.13  Score=38.51  Aligned_cols=37  Identities=24%  Similarity=0.342  Sum_probs=24.2

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKI   41 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~   41 (180)
                      ||+||||+|..++..+..  .. ..++-|.... ..+....
T Consensus        14 GGvGKTT~a~nLA~~La~--~G-~~VlliD~D~~q~~l~~~   51 (286)
T 2xj4_A           14 GGAGKSTIAVHLVTALLY--GG-AKVAVIDLDLRQRTSARF   51 (286)
T ss_dssp             SCTTHHHHHHHHHHHHHH--TT-CCEEEEECCTTTCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH--CC-CcEEEEECCCCCCCHHHH
Confidence            899999999999888642  22 2355566555 4444443

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=91.52  E-value=0.085  Score=37.30  Aligned_cols=16  Identities=38%  Similarity=0.601  Sum_probs=13.9

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      ++|+|||||++.+...
T Consensus        12 psGaGKSTLl~~L~~~   27 (198)
T 1lvg_A           12 PSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CTTSSHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHhh
Confidence            4799999999999765

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=91.46  E-value=0.079  Score=41.26  Aligned_cols=17  Identities=24%  Similarity=0.399  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||++|+.+++..
T Consensus        80 p~GtGKT~la~~la~~l   96 (376)
T 1um8_A           80 PTGSGKTLMAQTLAKHL   96 (376)
T ss_dssp             CTTSSHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999999874

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=91.36  E-value=0.07  Score=38.44  Aligned_cols=17  Identities=12%  Similarity=0.038  Sum_probs=14.8

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +||+|||++|..+++.+
T Consensus        66 PPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           66 PANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             CGGGCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999988874

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=91.34  E-value=0.088  Score=37.23  Aligned_cols=17  Identities=29%  Similarity=0.530  Sum_probs=14.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+||||+++.+...+
T Consensus        30 ~~GsGKstl~~~l~~~~   46 (201)
T 1rz3_A           30 LSRSGKTTLANQLSQTL   46 (201)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            47999999999998764

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=91.21  E-value=0.092  Score=37.47  Aligned_cols=15  Identities=27%  Similarity=0.326  Sum_probs=13.3

Q ss_pred             CCCCcHHHHHHHHHc
Q 046006            1 MGGVGKTTLLTHINN   15 (180)
Q Consensus         1 mgGiGKTtLA~~~~~   15 (180)
                      ++|+||||+++.+..
T Consensus        12 ~~GSGKST~~~~L~~   26 (218)
T 1vht_A           12 GIGSGKSTVANAFAD   26 (218)
T ss_dssp             CTTSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHH
Confidence            479999999999976

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=91.20  E-value=0.086  Score=42.35  Aligned_cols=36  Identities=0%  Similarity=-0.036  Sum_probs=28.5

Q ss_pred             eEeecCCChhhhHHHHHHH-----------HHHHHHHHc-CCChHHHH
Q 046006          106 NFKVECLSDNDAWELLRQK-----------LAQTVAKKC-VGLPLALI  141 (180)
Q Consensus       106 ~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c-~g~PLal~  141 (180)
                      .+.+++++.++..+++...           ....|++.+ .|.|....
T Consensus       360 ~~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~  407 (456)
T 2c9o_A          360 IIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSV  407 (456)
T ss_dssp             EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHH
T ss_pred             eeeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHH
Confidence            4689999999999999865           567788888 78886443

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=91.18  E-value=0.09  Score=41.77  Aligned_cols=17  Identities=24%  Similarity=0.317  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.++.++
T Consensus       266 ~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          266 FPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             CTTSSHHHHHHHHTGGG
T ss_pred             CCCCCHHHHHHHHHHhc
Confidence            58999999999998874

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=91.14  E-value=0.094  Score=37.11  Aligned_cols=16  Identities=38%  Similarity=0.482  Sum_probs=14.2

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      +.|+||||+|+.+...
T Consensus        20 ~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           20 KIGTGKSTVCEILKNK   35 (192)
T ss_dssp             STTSSHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHh
Confidence            4799999999999876

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=91.13  E-value=0.096  Score=37.19  Aligned_cols=17  Identities=24%  Similarity=0.501  Sum_probs=14.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||||++.+..-.
T Consensus        28 pnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           28 PSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             STTSSHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHhhC
Confidence            37999999999998764

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=91.11  E-value=0.089  Score=39.47  Aligned_cols=30  Identities=30%  Similarity=0.196  Sum_probs=20.1

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK   34 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~   34 (180)
                      ||+||||+|..++..+..  .. ..++-|....
T Consensus        46 GGvGKTT~a~nLA~~la~--~G-~rVlliD~D~   75 (298)
T 2oze_A           46 GGVGKSKLSTMFAYLTDK--LN-LKVLMIDKDL   75 (298)
T ss_dssp             SSSSHHHHHHHHHHHHHH--TT-CCEEEEEECT
T ss_pred             CCchHHHHHHHHHHHHHh--CC-CeEEEEeCCC
Confidence            899999999999887642  22 2345555443

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=91.09  E-value=0.092  Score=38.53  Aligned_cols=17  Identities=18%  Similarity=0.229  Sum_probs=14.7

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        30 ~~GSGKST~a~~L~~~l   46 (252)
T 1uj2_A           30 GTASGKSSVCAKIVQLL   46 (252)
T ss_dssp             STTSSHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999998864

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=91.08  E-value=0.1  Score=36.29  Aligned_cols=17  Identities=29%  Similarity=0.225  Sum_probs=14.8

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||||+..+...+
T Consensus        12 ~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A           12 YKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhh
Confidence            36999999999998875

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=91.04  E-value=0.091  Score=37.87  Aligned_cols=30  Identities=23%  Similarity=0.174  Sum_probs=21.0

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK   34 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~   34 (180)
                      ||+||||+|..++..+..  . -..++.+....
T Consensus        12 gGvGKTt~a~~LA~~la~--~-g~~VlliD~D~   41 (237)
T 1g3q_A           12 GGTGKTTVTANLSVALGD--R-GRKVLAVDGDL   41 (237)
T ss_dssp             TTSSHHHHHHHHHHHHHH--T-TCCEEEEECCT
T ss_pred             CCCCHHHHHHHHHHHHHh--c-CCeEEEEeCCC
Confidence            899999999999988642  2 22455666543

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=91.04  E-value=0.099  Score=38.48  Aligned_cols=17  Identities=29%  Similarity=0.456  Sum_probs=14.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+++.+...+
T Consensus        35 ~~GsGKSTl~k~La~~L   51 (252)
T 4e22_A           35 PSGAGKGTLCKALAESL   51 (252)
T ss_dssp             CTTSSHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHhc
Confidence            47999999999998654

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=91.00  E-value=0.17  Score=36.86  Aligned_cols=17  Identities=35%  Similarity=0.364  Sum_probs=14.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||.+.+..-.
T Consensus        39 ~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           39 PSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             STTSSHHHHHHHHTTSS
T ss_pred             CCCCcHHHHHHHHhcCC
Confidence            36999999999998654

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=91.00  E-value=0.18  Score=38.65  Aligned_cols=17  Identities=41%  Similarity=0.550  Sum_probs=14.8

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++..+.
T Consensus        28 GGvGKTTva~~LA~~lA   44 (329)
T 2woo_A           28 GGVGKTTTSCSLAIQMS   44 (329)
T ss_dssp             SSSSHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHH
Confidence            89999999999887753

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=90.99  E-value=0.081  Score=38.27  Aligned_cols=17  Identities=35%  Similarity=0.405  Sum_probs=15.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +||+||||.|+.++..+
T Consensus        37 pPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           37 GPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             CTTCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            58999999999999885

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=90.96  E-value=0.099  Score=36.76  Aligned_cols=17  Identities=12%  Similarity=0.303  Sum_probs=14.8

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        10 ~~GsGKst~~~~la~~l   26 (208)
T 3ake_A           10 PSASGKSSVARRVAAAL   26 (208)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhc
Confidence            47999999999998864

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=90.90  E-value=0.097  Score=39.85  Aligned_cols=17  Identities=29%  Similarity=0.530  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||+||..+++..
T Consensus       160 ~~GtGKT~La~aia~~~  176 (308)
T 2qgz_A          160 DMGIGKSYLLAAMAHEL  176 (308)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            47999999999999874

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=90.81  E-value=0.32  Score=34.92  Aligned_cols=17  Identities=24%  Similarity=0.354  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+++.+...+
T Consensus        14 ~~gsGKsT~~~~l~~~l   30 (213)
T 4edh_A           14 PEGAGKSTNRDYLAERL   30 (213)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            47999999999999886

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=90.77  E-value=0.38  Score=34.71  Aligned_cols=85  Identities=16%  Similarity=0.133  Sum_probs=40.4

Q ss_pred             CCCcHHHHHHHHHcccccccCCC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----------------CCCCcChH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDF-DCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD-----------------SWKNKNSE   63 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----------------~~~~~~~~   63 (180)
                      .|+||||+.....-+........ ...+.+.........++...+...++.....                 ..-....+
T Consensus        85 TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg  164 (235)
T 3llm_A           85 TGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVG  164 (235)
T ss_dssp             TTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSSEEEEEEHH
T ss_pred             CCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCCeEEEECHH
Confidence            69999986655433211111222 2233333333333445555665554432000                 00012345


Q ss_pred             HHHHHHHHHhCCCcEEEEEeCCCC
Q 046006           64 EKALEIFRFLSKKKFVLLLDDKWE   87 (180)
Q Consensus        64 ~~~~~l~~~L~~k~~LlVlDdv~~   87 (180)
                      .+.+.+...+.+ --++|+|+++.
T Consensus       165 ~l~~~l~~~l~~-~~~lVlDEah~  187 (235)
T 3llm_A          165 VLLRKLEAGIRG-ISHVIVDEIHE  187 (235)
T ss_dssp             HHHHHHHHCCTT-CCEEEECCTTS
T ss_pred             HHHHHHHhhhcC-CcEEEEECCcc
Confidence            555666554433 34789999875

>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*

Probab=90.76  E-value=0.57  Score=38.83  Aligned_cols=39  Identities=21%  Similarity=0.322  Sum_probs=27.5

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIV   45 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i   45 (180)
                      .|+|||+|+..+.++     .+-+.++++-+++.. ...++++++
T Consensus       241 ~g~GKT~L~~~ia~~-----~~~~v~V~~~iGER~~Ev~e~~~~~  280 (600)
T 3vr4_A          241 FGAGKTVVQHQIAKW-----SDVDLVVYVGCGERGNEMTDVVNEF  280 (600)
T ss_dssp             TTSCHHHHHHHHHHH-----SSCSEEEEEEEEECHHHHHHHHHHT
T ss_pred             CCccHHHHHHHHHhc-----cCCCEEEEEEecccHHHHHHHHHHH
Confidence            699999999999887     234678888787653 344444443

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=90.75  E-value=0.089  Score=38.52  Aligned_cols=17  Identities=18%  Similarity=0.393  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        17 ~~GsGKsTla~~la~~l   33 (233)
T 3r20_A           17 PAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999998774

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=90.71  E-value=0.12  Score=40.41  Aligned_cols=29  Identities=21%  Similarity=0.267  Sum_probs=20.3

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVS   33 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~   33 (180)
                      ||+||||+|..++..+.. +  -..++.+...
T Consensus       153 GGvGKTT~a~nLA~~La~-~--g~rVlliD~D  181 (373)
T 3fkq_A          153 GGVGTSTVAAACAIAHAN-M--GKKVFYLNIE  181 (373)
T ss_dssp             TTSSHHHHHHHHHHHHHH-H--TCCEEEEECC
T ss_pred             CCChHHHHHHHHHHHHHh-C--CCCEEEEECC
Confidence            899999999999887642 1  1235666644

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=90.68  E-value=0.11  Score=37.31  Aligned_cols=17  Identities=47%  Similarity=0.755  Sum_probs=14.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||||++.+...+
T Consensus        31 psGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           31 PSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             STTSSHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHhhC
Confidence            46999999999998753

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=90.65  E-value=0.11  Score=36.93  Aligned_cols=17  Identities=18%  Similarity=0.388  Sum_probs=14.7

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||||++.+...+
T Consensus        27 PSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           27 ASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             CTTSSHHHHHHHHHHHC
T ss_pred             cCCCCHHHHHHHHHhhC
Confidence            47999999999998764

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=90.63  E-value=0.2  Score=36.19  Aligned_cols=17  Identities=35%  Similarity=0.327  Sum_probs=14.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||.+.++.-.
T Consensus        38 ~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           38 ASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             CTTSCHHHHHHHHTTSS
T ss_pred             CCCCCHHHHHHHHhcCC
Confidence            36999999999998653

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}

Probab=90.62  E-value=0.15  Score=39.73  Aligned_cols=35  Identities=31%  Similarity=0.474  Sum_probs=23.7

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLE   39 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~   39 (180)
                      ||+||||+|..++..+..   .=..++-|......+..
T Consensus        11 GGvGKTT~a~nLA~~LA~---~G~rVLlID~D~q~~~~   45 (361)
T 3pg5_A           11 GGVGKTTLSTNVAHYFAL---QGKRVLYVDCDPQCNAT   45 (361)
T ss_dssp             CCHHHHHHHHHHHHHHHH---TTCCEEEEECCTTCTTH
T ss_pred             CCCcHHHHHHHHHHHHHh---CCCcEEEEEcCCCCChh
Confidence            899999999999888642   22346667665444433

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=90.60  E-value=0.082  Score=40.30  Aligned_cols=17  Identities=18%  Similarity=0.358  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||+||+.+++..
T Consensus        54 ~pGtGKT~la~~la~~~   70 (331)
T 2r44_A           54 VPGLAKTLSVNTLAKTM   70 (331)
T ss_dssp             CCCHHHHHHHHHHHHHT
T ss_pred             CCCCcHHHHHHHHHHHh
Confidence            47999999999998874

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=90.54  E-value=0.31  Score=35.67  Aligned_cols=28  Identities=18%  Similarity=0.357  Sum_probs=19.8

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWI   30 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv   30 (180)
                      ++|+||||+++.+...+.  ...+..+...
T Consensus        35 ~~GsGKsT~~~~l~~~l~--~~~~~~~~~~   62 (236)
T 3lv8_A           35 LEGAGKSTAIQVVVETLQ--QNGIDHITRT   62 (236)
T ss_dssp             STTSCHHHHHHHHHHHHH--HTTCCCEEEE
T ss_pred             CCCCCHHHHHHHHHHHHH--hcCCCeeeee
Confidence            479999999999998863  2445533333

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=90.53  E-value=0.11  Score=37.14  Aligned_cols=17  Identities=24%  Similarity=0.098  Sum_probs=14.8

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++..+.
T Consensus        11 gGvGKTt~a~nLa~~la   27 (224)
T 1byi_A           11 TEVGKTVASCALLQAAK   27 (224)
T ss_dssp             TTSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            89999999999987763

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=90.50  E-value=0.33  Score=34.90  Aligned_cols=45  Identities=16%  Similarity=0.122  Sum_probs=25.8

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGK   47 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~   47 (180)
                      +.|+||||+++.+...+.  ...+..+.+..-.....+-+.+++++.
T Consensus        11 ~~gsGKsT~~~~l~~~l~--~~~~~~v~~~rep~~t~~g~~ir~~l~   55 (213)
T 4tmk_A           11 LEGAGKTTARNVVVETLE--QLGIRDMVFTREPGGTQLAEKLRSLLL   55 (213)
T ss_dssp             CTTSCHHHHHHHHHHHHH--HTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH--HcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence            479999999999998863  234423333322222233444555544

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=90.34  E-value=0.12  Score=38.47  Aligned_cols=17  Identities=29%  Similarity=0.569  Sum_probs=14.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||||+.+++...
T Consensus        38 ~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           38 PGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            37999999999998653

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=90.33  E-value=0.12  Score=37.47  Aligned_cols=18  Identities=28%  Similarity=0.595  Sum_probs=15.9

Q ss_pred             CCCCcHHHHHHHHHcccc
Q 046006            1 MGGVGKTTLLTHINNKFL   18 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~   18 (180)
                      ++|+||||+++.+...+.
T Consensus        34 ~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           34 PEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             CTTSCHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            479999999999999863

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=90.32  E-value=0.11  Score=38.06  Aligned_cols=30  Identities=27%  Similarity=0.367  Sum_probs=20.5

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK   34 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~   34 (180)
                      ||+||||+|..++..+..  .. ..++-|....
T Consensus        16 GGvGKTt~a~~LA~~la~--~g-~~VlliD~D~   45 (257)
T 1wcv_1           16 GGVGKTTTAINLAAYLAR--LG-KRVLLVDLDP   45 (257)
T ss_dssp             CCHHHHHHHHHHHHHHHH--TT-CCEEEEECCT
T ss_pred             CCchHHHHHHHHHHHHHH--CC-CCEEEEECCC
Confidence            899999999999888642  22 2355555443

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=90.32  E-value=0.12  Score=39.42  Aligned_cols=17  Identities=24%  Similarity=0.225  Sum_probs=14.7

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||||++.+..-+
T Consensus        98 ~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           98 SVAVGKSTTARVLQALL  114 (312)
T ss_dssp             CTTSCHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHhhc
Confidence            36999999999998765

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=90.31  E-value=0.22  Score=36.97  Aligned_cols=17  Identities=41%  Similarity=0.425  Sum_probs=14.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||.+.++.-.
T Consensus        40 ~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           40 SSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             CTTSSHHHHHHHHTTSS
T ss_pred             CCCCCHHHHHHHHhcCC
Confidence            36999999999998664

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=90.31  E-value=0.24  Score=36.23  Aligned_cols=17  Identities=29%  Similarity=0.405  Sum_probs=14.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||.+.++.-.
T Consensus        32 ~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           32 PTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             CTTSSHHHHHHHHHTSS
T ss_pred             CCCCCHHHHHHHHhCCC
Confidence            36999999999998653

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=90.27  E-value=0.22  Score=37.31  Aligned_cols=23  Identities=26%  Similarity=0.254  Sum_probs=16.6

Q ss_pred             HHHHHHHhCCCcEEEEEeCCCCc
Q 046006           66 ALEIFRFLSKKKFVLLLDDKWER   88 (180)
Q Consensus        66 ~~~l~~~L~~k~~LlVlDdv~~~   88 (180)
                      .-.+...|-.++=+|+||+--..
T Consensus       151 Rv~iAraL~~~P~lLlLDEPts~  173 (275)
T 3gfo_A          151 RVAIAGVLVMEPKVLILDEPTAG  173 (275)
T ss_dssp             HHHHHHHHTTCCSEEEEECTTTT
T ss_pred             HHHHHHHHHcCCCEEEEECcccc
Confidence            34466667778889999996654

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=90.26  E-value=0.95  Score=44.19  Aligned_cols=70  Identities=23%  Similarity=0.224  Sum_probs=42.8

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-C--CCCcChHHHHHHHHHHhCCCc
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD-S--WKNKNSEEKALEIFRFLSKKK   77 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~--~~~~~~~~~~~~l~~~L~~k~   77 (180)
                      ++|+|||++|+.+....    ..+ ..+.++.+...+...++..+-..+...... .  ..+.            -.+++
T Consensus      1275 PpGtGKT~la~~~l~~~----~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~------------~~gk~ 1337 (2695)
T 4akg_A         1275 PPGSGKTMIMNNALRNS----SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPK------------SDIKN 1337 (2695)
T ss_dssp             STTSSHHHHHHHHHHSC----SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEB------------SSSSC
T ss_pred             CCCCCHHHHHHHHHhcC----CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCC------------CCCce
Confidence            48999999998877663    223 345677777777777766666555321000 0  0000            03678


Q ss_pred             EEEEEeCCCC
Q 046006           78 FVLLLDDKWE   87 (180)
Q Consensus        78 ~LlVlDdv~~   87 (180)
                      +++.+||++-
T Consensus      1338 ~VlFiDEinm 1347 (2695)
T 4akg_A         1338 LVLFCDEINL 1347 (2695)
T ss_dssp             EEEEEETTTC
T ss_pred             EEEEeccccc
Confidence            8999999654

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=90.25  E-value=0.12  Score=38.01  Aligned_cols=30  Identities=23%  Similarity=0.300  Sum_probs=20.7

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK   34 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~   34 (180)
                      ||+||||+|..++..+..  .. ..++-+....
T Consensus        12 gGvGKTt~a~~LA~~la~--~g-~~VlliD~D~   41 (263)
T 1hyq_A           12 GGTGKTTITANLGVALAQ--LG-HDVTIVDADI   41 (263)
T ss_dssp             SCSCHHHHHHHHHHHHHH--TT-CCEEEEECCC
T ss_pred             CCCCHHHHHHHHHHHHHh--CC-CcEEEEECCC
Confidence            899999999999988642  22 2355566543

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=90.25  E-value=0.11  Score=37.68  Aligned_cols=17  Identities=24%  Similarity=0.438  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +.|+||||+++.++..+
T Consensus        10 ~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A           10 NIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CTTSSHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            46999999999999875

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=90.24  E-value=0.081  Score=42.37  Aligned_cols=17  Identities=29%  Similarity=0.438  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+||||++..++..+
T Consensus       107 ~~GvGKTTla~~La~~l  123 (432)
T 2v3c_C          107 IQGSGKTTTAAKLARYI  123 (432)
T ss_dssp             CSSSSTTHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            47999999999998875

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=90.23  E-value=0.12  Score=38.97  Aligned_cols=17  Identities=29%  Similarity=0.344  Sum_probs=14.7

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+||||||+.+...+
T Consensus        39 ~sGsGKSTla~~L~~~l   55 (290)
T 1odf_A           39 PQGSGKSFTSIQIYNHL   55 (290)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            37999999999988775

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=90.19  E-value=0.11  Score=39.86  Aligned_cols=17  Identities=24%  Similarity=0.337  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||||..++..+
T Consensus        13 ptGsGKTtla~~La~~l   29 (323)
T 3crm_A           13 PTAAGKTDLAMALADAL   29 (323)
T ss_dssp             CTTSCHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            47999999999998874

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=90.19  E-value=0.13  Score=37.57  Aligned_cols=17  Identities=24%  Similarity=0.239  Sum_probs=14.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||++.+...+
T Consensus        33 ~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           33 GTASGKSTVCEKIMELL   49 (245)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            36999999999998753

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=90.18  E-value=0.56  Score=38.24  Aligned_cols=33  Identities=21%  Similarity=0.409  Sum_probs=21.7

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQ   37 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~   37 (180)
                      .+|+|||||++.++..+.    ...+.+.+.-...+.
T Consensus       301 pNGSGKTTLl~~LAgll~----~~~G~V~l~g~D~~r  333 (503)
T 2yhs_A          301 VNGVGKTTTIGKLARQFE----QQGKSVMLAAGDTFR  333 (503)
T ss_dssp             CTTSSHHHHHHHHHHHHH----HTTCCEEEECCCTTC
T ss_pred             CCcccHHHHHHHHHHHhh----hcCCeEEEecCcccc
Confidence            379999999999988752    123555555444443

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=90.14  E-value=0.13  Score=38.63  Aligned_cols=17  Identities=24%  Similarity=0.464  Sum_probs=14.8

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||||++.++...
T Consensus        43 ~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           43 GSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            37999999999998874

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=90.11  E-value=0.24  Score=36.87  Aligned_cols=17  Identities=35%  Similarity=0.550  Sum_probs=14.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||.+.++.-.
T Consensus        45 ~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           45 PNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             CTTSCHHHHHHHHTSSS
T ss_pred             CCCCcHHHHHHHHhcCC
Confidence            36999999999998653

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=90.11  E-value=0.12  Score=39.46  Aligned_cols=29  Identities=28%  Similarity=0.486  Sum_probs=19.2

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVS   33 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~   33 (180)
                      ||+||||.|..+..-+.+  .. ..+.-|...
T Consensus        57 GGVGKTTtavNLA~aLA~--~G-kkVllID~D   85 (314)
T 3fwy_A           57 GGIGKSTTSSNLSAAFSI--LG-KRVLQIGCD   85 (314)
T ss_dssp             TTSSHHHHHHHHHHHHHH--TT-CCEEEEEES
T ss_pred             CccCHHHHHHHHHHHHHH--CC-CeEEEEecC
Confidence            899999999888776531  11 235555544

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=90.08  E-value=0.13  Score=38.49  Aligned_cols=15  Identities=27%  Similarity=0.665  Sum_probs=13.2

Q ss_pred             CCCCcHHHHHHHHHc
Q 046006            1 MGGVGKTTLLTHINN   15 (180)
Q Consensus         1 mgGiGKTtLA~~~~~   15 (180)
                      ++|+||||+|+.+..
T Consensus        83 ~~GSGKSTva~~La~   97 (281)
T 2f6r_A           83 ISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CTTSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHH
Confidence            479999999999983

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=90.06  E-value=0.14  Score=37.01  Aligned_cols=17  Identities=24%  Similarity=0.425  Sum_probs=14.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||||.+.+....
T Consensus        24 psGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           24 PSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CTTSCHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHhccC
Confidence            47999999999998764

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=89.97  E-value=0.46  Score=33.81  Aligned_cols=17  Identities=29%  Similarity=0.677  Sum_probs=15.0

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      -|+||||+++.+++.+.
T Consensus        11 dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A           11 EGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             TTSCHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHH
Confidence            59999999999998863

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=89.93  E-value=0.23  Score=36.02  Aligned_cols=17  Identities=41%  Similarity=0.579  Sum_probs=14.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||.+.++.-.
T Consensus        42 ~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           42 STGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             CTTSSHHHHHHHHTTSS
T ss_pred             CCCCCHHHHHHHHhCCC
Confidence            36999999999998764

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=89.83  E-value=0.26  Score=35.42  Aligned_cols=17  Identities=47%  Similarity=0.698  Sum_probs=14.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||.+.++.-.
T Consensus        43 ~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           43 PNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CTTSSHHHHHHHHTTSS
T ss_pred             CCCCCHHHHHHHHhcCC
Confidence            36999999999998764

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=89.79  E-value=0.12  Score=37.76  Aligned_cols=17  Identities=41%  Similarity=0.571  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        16 ~pGsGKsT~a~~L~~~~   32 (230)
T 3gmt_A           16 APGAGKGTQANFIKEKF   32 (230)
T ss_dssp             CTTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999998875

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=89.77  E-value=0.15  Score=34.80  Aligned_cols=16  Identities=38%  Similarity=0.382  Sum_probs=13.9

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      .|+|||||.+.++.-+
T Consensus        42 nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           42 LGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             TTSSHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHhC
Confidence            5999999999998764

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=89.76  E-value=0.25  Score=36.26  Aligned_cols=17  Identities=35%  Similarity=0.507  Sum_probs=14.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||.+.++.-.
T Consensus        43 ~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           43 RSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             STTSSHHHHHHHHTTSS
T ss_pred             CCCCCHHHHHHHHhcCC
Confidence            36999999999997764

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=89.64  E-value=0.14  Score=36.48  Aligned_cols=16  Identities=31%  Similarity=0.509  Sum_probs=14.2

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      +|+|||||+..++...
T Consensus        47 ~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           47 IGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TTSSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            7999999999998773

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=89.63  E-value=0.27  Score=36.57  Aligned_cols=17  Identities=35%  Similarity=0.384  Sum_probs=14.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||.+.++.-.
T Consensus        58 ~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           58 PSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             CTTSSHHHHHHHHTTSS
T ss_pred             CCCCcHHHHHHHHHcCC
Confidence            36999999999998654

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=89.57  E-value=0.27  Score=35.93  Aligned_cols=17  Identities=41%  Similarity=0.524  Sum_probs=14.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||.+.++.-.
T Consensus        40 ~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           40 ANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             STTSSHHHHHHHHTTSS
T ss_pred             CCCCCHHHHHHHHhCCC
Confidence            36999999999998653

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=89.57  E-value=0.17  Score=35.70  Aligned_cols=17  Identities=41%  Similarity=0.573  Sum_probs=14.5

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||.+.++..+
T Consensus         9 ~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            9 PPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCSSCHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHhhc
Confidence            37999999999988764

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=89.56  E-value=0.16  Score=35.35  Aligned_cols=17  Identities=41%  Similarity=0.593  Sum_probs=14.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||||+..+...+
T Consensus        14 ~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A           14 WSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CTTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhc
Confidence            37999999999998764

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=89.55  E-value=0.16  Score=33.76  Aligned_cols=15  Identities=40%  Similarity=0.740  Sum_probs=13.5

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+...
T Consensus        12 ~~~GKssl~~~l~~~   26 (166)
T 2ce2_X           12 GGVGKSALTIQLIQN   26 (166)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHhC
Confidence            799999999999765

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=89.55  E-value=0.13  Score=41.99  Aligned_cols=17  Identities=18%  Similarity=0.368  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||+||+.+++..
T Consensus        49 pPGtGKT~LAraLa~~l   65 (500)
T 3nbx_X           49 PPGIAKSLIARRLKFAF   65 (500)
T ss_dssp             CSSSSHHHHHHHGGGGB
T ss_pred             CchHHHHHHHHHHHHHH
Confidence            48999999999999874

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=89.54  E-value=0.084  Score=40.34  Aligned_cols=17  Identities=24%  Similarity=0.356  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||+||+.+++..
T Consensus        53 ~~GtGKT~la~~la~~~   69 (350)
T 1g8p_A           53 DRGTGKSTAVRALAALL   69 (350)
T ss_dssp             CGGGCTTHHHHHHHHHS
T ss_pred             CCCccHHHHHHHHHHhC
Confidence            37999999999999874

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=89.54  E-value=0.16  Score=39.23  Aligned_cols=17  Identities=29%  Similarity=0.538  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +.|+||||||..++..+
T Consensus        48 PTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           48 ATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             STTSSHHHHHHHHHTTS
T ss_pred             CCCCCHHHHHHHHHHHC
Confidence            46999999999999875

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=89.47  E-value=0.27  Score=36.66  Aligned_cols=17  Identities=29%  Similarity=0.530  Sum_probs=14.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||.+.++.-.
T Consensus        53 ~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           53 PNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             STTSSHHHHHHHHTTSS
T ss_pred             CCCCCHHHHHHHHhcCC
Confidence            36999999999998664

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=89.37  E-value=0.28  Score=36.22  Aligned_cols=17  Identities=35%  Similarity=0.516  Sum_probs=14.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||.+.++.-.
T Consensus        41 ~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           41 PNGSGKSTLINVITGFL   57 (257)
T ss_dssp             STTSSHHHHHHHHTTSS
T ss_pred             CCCCCHHHHHHHHhCCC
Confidence            36999999999997653

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=89.34  E-value=0.15  Score=40.88  Aligned_cols=17  Identities=29%  Similarity=0.386  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||++|+.++...
T Consensus        58 ppGtGKT~lar~lA~~l   74 (444)
T 1g41_A           58 PTGVGKTEIARRLAKLA   74 (444)
T ss_dssp             CTTSSHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            58999999999998875

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=89.33  E-value=0.091  Score=38.80  Aligned_cols=17  Identities=18%  Similarity=0.221  Sum_probs=14.8

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +.|+||||+|+.+...+
T Consensus        32 ~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           32 NIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             STTSSHHHHHTTTGGGC
T ss_pred             CCCCCHHHHHHHHHHhc
Confidence            36999999999998875

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=89.20  E-value=0.3  Score=36.12  Aligned_cols=17  Identities=41%  Similarity=0.473  Sum_probs=14.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||.+.++.-.
T Consensus        49 ~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           49 PNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             CTTSSHHHHHHHHTTSS
T ss_pred             CCCCCHHHHHHHHhcCC
Confidence            36999999999998653

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=89.19  E-value=0.16  Score=39.97  Aligned_cols=17  Identities=29%  Similarity=0.429  Sum_probs=14.8

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++..+.
T Consensus       118 GGvGKTT~a~nLA~~La  134 (398)
T 3ez2_A          118 GGVSKTVSTVSLAHAMR  134 (398)
T ss_dssp             SSSSHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHH
Confidence            89999999999987753

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=89.16  E-value=0.15  Score=39.50  Aligned_cols=17  Identities=35%  Similarity=0.466  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||||..++..+
T Consensus        15 ptgSGKTtla~~La~~l   31 (340)
T 3d3q_A           15 PTASGKTELSIEVAKKF   31 (340)
T ss_dssp             STTSSHHHHHHHHHHHT
T ss_pred             CCcCcHHHHHHHHHHHc
Confidence            47999999999998875

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=89.08  E-value=0.26  Score=36.09  Aligned_cols=17  Identities=24%  Similarity=0.497  Sum_probs=14.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||.+.++.-.
T Consensus        36 ~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           36 PSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             CTTSSHHHHHHHHTTSS
T ss_pred             CCCCCHHHHHHHHhcCC
Confidence            36999999999987653

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=89.08  E-value=0.21  Score=37.82  Aligned_cols=17  Identities=18%  Similarity=0.200  Sum_probs=14.7

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||++|+.+.+..
T Consensus        33 e~GtGKt~lAr~i~~~~   49 (304)
T 1ojl_A           33 DSGTGKELVARALHACS   49 (304)
T ss_dssp             CTTSCHHHHHHHHHHHS
T ss_pred             CCCchHHHHHHHHHHhC
Confidence            37999999999998863

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=88.99  E-value=0.17  Score=39.39  Aligned_cols=17  Identities=24%  Similarity=0.372  Sum_probs=14.5

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+++.++..+
T Consensus        32 ~~G~GKTTl~~~la~~l   48 (359)
T 2ga8_A           32 SPGSGKSTIAEELCQII   48 (359)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHh
Confidence            58999999999887754

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=88.97  E-value=0.14  Score=41.86  Aligned_cols=18  Identities=22%  Similarity=0.220  Sum_probs=16.0

Q ss_pred             CCCCcHHHHHHHHHcccc
Q 046006            1 MGGVGKTTLLTHINNKFL   18 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~   18 (180)
                      ++|+||||+|+.+...+.
T Consensus       403 lsGsGKSTIa~~La~~L~  420 (511)
T 1g8f_A          403 SLTVSREQLSIALLSTFL  420 (511)
T ss_dssp             TCCSCHHHHHHHHHHHHT
T ss_pred             cCCCCHHHHHHHHHHHHH
Confidence            579999999999999873

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...

Probab=88.94  E-value=0.56  Score=38.27  Aligned_cols=86  Identities=10%  Similarity=0.149  Sum_probs=45.9

Q ss_pred             CCCcHHHHHH-HHHcccccc----cCCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChHH------H
Q 046006            2 GGVGKTTLLT-HINNKFLVS----STDFD-CVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSEE------K   65 (180)
Q Consensus         2 gGiGKTtLA~-~~~~~~~~~----~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~------~   65 (180)
                      +|+|||+||. .+.++. ..    .++-+ .++++-+++.. ...++.+.+...=.....   ......+...      .
T Consensus       171 ~g~GKT~Lal~~I~~q~-~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~  249 (510)
T 2ck3_A          171 RQTGKTSIAIDTIINQK-RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYS  249 (510)
T ss_dssp             TTSSHHHHHHHHHHHTH-HHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHH-hhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHHHHHHHHH
Confidence            6999999954 566662 21    12344 46777788765 455666666542111100   0011111111      1


Q ss_pred             HHHHHHHh--CCCcEEEEEeCCCCc
Q 046006           66 ALEIFRFL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        66 ~~~l~~~L--~~k~~LlVlDdv~~~   88 (180)
                      .-.+.+++  +++.+|+++||+...
T Consensus       250 a~tiAEyfrd~G~dVLli~Dsltr~  274 (510)
T 2ck3_A          250 GCSMGEYFRDNGKHALIIYDDLSKQ  274 (510)
T ss_dssp             HHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred             HHHHHHHHHHcCCcEEEEEcCHHHH
Confidence            22334444  578999999998643

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=88.92  E-value=0.31  Score=36.16  Aligned_cols=22  Identities=18%  Similarity=0.289  Sum_probs=16.0

Q ss_pred             HHHHHHhCCCcEEEEEeCCCCc
Q 046006           67 LEIFRFLSKKKFVLLLDDKWER   88 (180)
Q Consensus        67 ~~l~~~L~~k~~LlVlDdv~~~   88 (180)
                      -.+...|-.++=+++||+--..
T Consensus       147 v~lAraL~~~p~lllLDEPts~  168 (266)
T 2yz2_A          147 VAIASVIVHEPDILILDEPLVG  168 (266)
T ss_dssp             HHHHHHHTTCCSEEEEESTTTT
T ss_pred             HHHHHHHHcCCCEEEEcCcccc
Confidence            3455666777889999997665

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=88.90  E-value=0.14  Score=41.35  Aligned_cols=20  Identities=15%  Similarity=0.250  Sum_probs=16.7

Q ss_pred             ceEeecCCChhhhHHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK  124 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~  124 (180)
                      ..+.+++++.++..+++...
T Consensus       318 ~~i~v~~p~~e~~~~iL~~~  337 (468)
T 3pxg_A          318 QPIQVDQPSVDESIQILQGL  337 (468)
T ss_dssp             EEEECCCCCHHHHHHHHHHT
T ss_pred             ccceeCCCCHHHHHHHHHHH
Confidence            36889999999999998854

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=88.90  E-value=0.2  Score=33.25  Aligned_cols=15  Identities=33%  Similarity=0.576  Sum_probs=13.5

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        10 ~~~GKSsli~~l~~~   24 (161)
T 2dyk_A           10 PNVGKSSLFNRLLKK   24 (161)
T ss_dssp             TTSSHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHhCC
Confidence            699999999999876

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=88.81  E-value=0.33  Score=36.40  Aligned_cols=17  Identities=47%  Similarity=0.614  Sum_probs=14.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||.+.++.-.
T Consensus        55 ~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           55 LNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             CTTSSHHHHHHHHTTSS
T ss_pred             CCCCcHHHHHHHHhCCC
Confidence            36999999999998764

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=88.81  E-value=0.18  Score=38.29  Aligned_cols=17  Identities=35%  Similarity=0.706  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+++.++..+
T Consensus       110 ~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          110 VNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHH
Confidence            47999999999998775

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=88.77  E-value=0.19  Score=38.59  Aligned_cols=17  Identities=24%  Similarity=0.210  Sum_probs=14.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+||||||+.+...+
T Consensus       100 psGSGKSTl~~~L~~ll  116 (321)
T 3tqc_A          100 SVAVGKSTTSRVLKALL  116 (321)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            37999999999987764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=88.77  E-value=0.2  Score=34.81  Aligned_cols=15  Identities=40%  Similarity=0.775  Sum_probs=13.7

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||.+.+...
T Consensus        38 ~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           38 SGVGKSNLLSRFTRN   52 (191)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHhcC
Confidence            799999999999876

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=88.72  E-value=0.17  Score=34.82  Aligned_cols=15  Identities=47%  Similarity=0.667  Sum_probs=13.5

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||.+.++..
T Consensus        11 ~gvGKStLl~~l~~~   25 (184)
T 2zej_A           11 TGSGKTTLLQQLMKT   25 (184)
T ss_dssp             TTSSHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHHhcC
Confidence            799999999999874

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=88.68  E-value=0.18  Score=36.87  Aligned_cols=17  Identities=29%  Similarity=0.513  Sum_probs=14.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||.+.++.-.
T Consensus        39 ~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           39 QVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             STTSSHHHHHHHHTTCS
T ss_pred             CCCCCHHHHHHHHhcCC
Confidence            36999999999998764

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=88.65  E-value=0.17  Score=36.16  Aligned_cols=17  Identities=24%  Similarity=0.276  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+||||||..+..+.
T Consensus        42 psGsGKStLA~~La~~g   58 (205)
T 2qmh_A           42 DSGVGKSETALELVQRG   58 (205)
T ss_dssp             CCTTTTHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHhC
Confidence            47999999999998874

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=88.49  E-value=0.23  Score=33.57  Aligned_cols=15  Identities=27%  Similarity=0.565  Sum_probs=13.6

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+...
T Consensus        12 ~gvGKStL~~~l~~~   26 (165)
T 2wji_A           12 PNVGKSTIFNALTGE   26 (165)
T ss_dssp             TTSSHHHHHHHHHCC
T ss_pred             CCCCHHHHHHHHhCC
Confidence            799999999999875

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=88.46  E-value=0.12  Score=37.27  Aligned_cols=16  Identities=31%  Similarity=0.484  Sum_probs=8.8

Q ss_pred             CCCCcHHHHHHHHH-cc
Q 046006            1 MGGVGKTTLLTHIN-NK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~-~~   16 (180)
                      +.|+|||||++.+. ..
T Consensus        35 p~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           35 PSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             SCC----CHHHHHHC--
T ss_pred             CCCCCHHHHHHHHHhcC
Confidence            47999999999998 54

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=88.35  E-value=0.38  Score=37.50  Aligned_cols=47  Identities=17%  Similarity=0.242  Sum_probs=25.9

Q ss_pred             HHHHHHHhCCCC--CCCCCCcChHH-HHHHHHHHhCCCcEEEEEeCCCCc
Q 046006           42 QEIVGKKVGLLD--GDSWKNKNSEE-KALEIFRFLSKKKFVLLLDDKWER   88 (180)
Q Consensus        42 ~~~i~~~l~~~~--~~~~~~~~~~~-~~~~l~~~L~~k~~LlVlDdv~~~   88 (180)
                      ..++++.++...  ......-+..+ ..-.+.+.|-.++-+|+||+--+.
T Consensus       119 v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~  168 (359)
T 3fvq_A          119 IEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSA  168 (359)
T ss_dssp             HHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred             HHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence            455666666541  11112223333 334566677778889999986544

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=88.32  E-value=0.2  Score=35.54  Aligned_cols=16  Identities=31%  Similarity=0.430  Sum_probs=14.2

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      +|+|||||+..+....
T Consensus        39 ~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           39 IGSGKTLLIERTIERI   54 (221)
T ss_dssp             TTSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            7999999999998774

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=88.28  E-value=0.22  Score=34.32  Aligned_cols=15  Identities=40%  Similarity=0.740  Sum_probs=13.6

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||+..+...
T Consensus        30 ~~~GKSsli~~l~~~   44 (190)
T 3con_A           30 GGVGKSALTIQLIQN   44 (190)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHcC
Confidence            799999999999866

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=88.25  E-value=0.22  Score=38.15  Aligned_cols=17  Identities=24%  Similarity=0.317  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||||..++..+
T Consensus        11 ptgsGKt~la~~La~~~   27 (322)
T 3exa_A           11 PTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CTTSCHHHHHHHHHHTT
T ss_pred             CCcCCHHHHHHHHHHhC
Confidence            47999999999998774

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=88.20  E-value=0.22  Score=37.81  Aligned_cols=17  Identities=24%  Similarity=0.225  Sum_probs=14.5

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||++.+...+
T Consensus        88 ~~GsGKSTl~~~L~~~l  104 (308)
T 1sq5_A           88 SVAVGKSTTARVLQALL  104 (308)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            37999999999998764

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=88.20  E-value=0.32  Score=40.26  Aligned_cols=29  Identities=24%  Similarity=0.336  Sum_probs=19.9

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVS   33 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~   33 (180)
                      ||+||||+|..++..+.+ .  -..++.|+..
T Consensus        17 GGvGKTT~a~~lA~~lA~-~--G~rVLlvd~D   45 (589)
T 1ihu_A           17 GGVGKTSISCATAIRLAE-Q--GKRVLLVSTD   45 (589)
T ss_dssp             TTSSHHHHHHHHHHHHHH-T--TCCEEEEECC
T ss_pred             CcCHHHHHHHHHHHHHHH-C--CCcEEEEECC
Confidence            899999999999887642 1  1235555544

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=88.19  E-value=0.2  Score=41.01  Aligned_cols=17  Identities=18%  Similarity=0.296  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.++..+
T Consensus        43 lpGSGKSTia~~La~~L   59 (520)
T 2axn_A           43 LPARGKTYISKKLTRYL   59 (520)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            58999999999998764

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=88.13  E-value=0.21  Score=40.29  Aligned_cols=17  Identities=18%  Similarity=0.296  Sum_probs=14.8

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.++..+
T Consensus        47 lpGsGKSTia~~La~~l   63 (469)
T 1bif_A           47 LPARGKTYISKKLTRYL   63 (469)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            58999999999998764

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=88.08  E-value=0.21  Score=38.78  Aligned_cols=16  Identities=44%  Similarity=0.696  Sum_probs=13.9

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      ||+||||+|..++..+
T Consensus        27 GGvGKTt~a~~lA~~l   42 (348)
T 3io3_A           27 GGVGKTTTSSSVAVQL   42 (348)
T ss_dssp             TTSSHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHH
Confidence            8999999999887664

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=88.06  E-value=0.23  Score=33.17  Aligned_cols=15  Identities=27%  Similarity=0.594  Sum_probs=13.5

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        14 ~~~GKssl~~~l~~~   28 (168)
T 1z2a_A           14 GAVGKSSMIQRYCKG   28 (168)
T ss_dssp             TTSSHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHcC
Confidence            699999999999875

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=88.00  E-value=0.14  Score=35.46  Aligned_cols=16  Identities=38%  Similarity=0.490  Sum_probs=14.3

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      +|+|||||++.+...+
T Consensus        11 SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A           11 SDSGKTTLITRMMPIL   26 (171)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            6999999999998775

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=87.92  E-value=0.24  Score=34.54  Aligned_cols=15  Identities=40%  Similarity=0.775  Sum_probs=13.7

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||.+.+...
T Consensus        14 ~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A           14 SGVGKSNLLSRFTRN   28 (199)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHhcC
Confidence            699999999999876

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=87.87  E-value=0.25  Score=34.54  Aligned_cols=16  Identities=19%  Similarity=0.374  Sum_probs=14.1

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      .+|+||||||..+..+
T Consensus        24 ~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           24 EANIGKSELSLALIDR   39 (181)
T ss_dssp             SSSSSHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHc
Confidence            3799999999999876

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=87.86  E-value=0.26  Score=33.80  Aligned_cols=15  Identities=27%  Similarity=0.565  Sum_probs=13.5

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+...
T Consensus        16 ~gvGKStL~~~l~~~   30 (188)
T 2wjg_A           16 PNVGKSTIFNALTGE   30 (188)
T ss_dssp             TTSSHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHhCC
Confidence            699999999999874

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=87.67  E-value=0.26  Score=33.20  Aligned_cols=15  Identities=47%  Similarity=0.643  Sum_probs=13.5

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+...
T Consensus        13 ~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A           13 PGVGKTSLASLFAGK   27 (175)
T ss_dssp             TTSSHHHHHHHHHCC
T ss_pred             CCccHHHHHHHHhcC
Confidence            699999999999866

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=87.65  E-value=0.25  Score=37.54  Aligned_cols=17  Identities=35%  Similarity=0.587  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+||||+++.++..+
T Consensus       108 ~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A          108 VNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             CTTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            47999999999998875

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=87.44  E-value=0.26  Score=32.75  Aligned_cols=15  Identities=40%  Similarity=0.645  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        13 ~~~GKssl~~~l~~~   27 (168)
T 1u8z_A           13 GGVGKSALTLQFMYD   27 (168)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHhC
Confidence            699999999999865

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=87.44  E-value=0.23  Score=37.98  Aligned_cols=17  Identities=24%  Similarity=0.301  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +.|+||||||..++..+
T Consensus        18 ptgsGKt~la~~La~~~   34 (316)
T 3foz_A           18 PTASGKTALAIELRKIL   34 (316)
T ss_dssp             CTTSCHHHHHHHHHHHS
T ss_pred             CCccCHHHHHHHHHHhC
Confidence            46999999999998874

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=87.43  E-value=0.23  Score=34.73  Aligned_cols=16  Identities=31%  Similarity=0.183  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      .|+||||++..++.++
T Consensus        12 ~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A           12 MYSGKTTELLSFVEIY   27 (184)
T ss_dssp             TTSSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            5999999998777664

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=87.35  E-value=0.25  Score=35.70  Aligned_cols=17  Identities=29%  Similarity=0.429  Sum_probs=14.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+++.+...+
T Consensus        24 ~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           24 PASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             SSCSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            47999999999998764

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=87.32  E-value=0.19  Score=35.95  Aligned_cols=16  Identities=31%  Similarity=0.260  Sum_probs=13.6

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      ..|+|||||.+.++.-
T Consensus        30 ~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           30 PAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             CTTSSTTHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHhcC
Confidence            3699999999998764

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*

Probab=87.31  E-value=0.25  Score=38.40  Aligned_cols=16  Identities=50%  Similarity=0.636  Sum_probs=13.9

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      ||+||||+|..++..+
T Consensus        27 GGvGKTTvaanLA~~l   42 (354)
T 2woj_A           27 GGVGKTTSSCSIAIQM   42 (354)
T ss_dssp             TTSSHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHH
Confidence            8999999999887765

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=87.21  E-value=0.18  Score=36.43  Aligned_cols=16  Identities=44%  Similarity=0.518  Sum_probs=13.5

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      +.|+|||||++.+...
T Consensus        28 ~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           28 NIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             STTSCHHHHHHTTGGG
T ss_pred             CCCCCHHHHHHHHHhc
Confidence            3699999999998765

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=87.16  E-value=0.43  Score=35.10  Aligned_cols=17  Identities=35%  Similarity=0.524  Sum_probs=14.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||.+.++.-.
T Consensus        34 ~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           34 PNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             CTTSSHHHHHHHHTTSS
T ss_pred             CCCCcHHHHHHHHhCCC
Confidence            36999999999998764

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}

Probab=87.13  E-value=0.21  Score=39.16  Aligned_cols=17  Identities=18%  Similarity=0.292  Sum_probs=14.5

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++..+.
T Consensus        11 GG~GKTt~a~~la~~la   27 (374)
T 3igf_A           11 SGVARTKIAIAAAKLLA   27 (374)
T ss_dssp             BHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHH
Confidence            89999999999887653

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=87.11  E-value=0.28  Score=34.84  Aligned_cols=17  Identities=18%  Similarity=0.427  Sum_probs=14.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        11 ~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A           11 PAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CTTSSHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHhc
Confidence            47999999999998764

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=87.01  E-value=0.29  Score=34.53  Aligned_cols=16  Identities=38%  Similarity=0.474  Sum_probs=14.2

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      .+|+|||||...+.+.
T Consensus        20 ~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           20 PQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             STTSSHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHhcC
Confidence            3799999999999876

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=87.00  E-value=0.52  Score=36.76  Aligned_cols=47  Identities=23%  Similarity=0.111  Sum_probs=26.2

Q ss_pred             HHHHHHHhCCCCCC--CCCCcChHH-HHHHHHHHhCCCcEEEEEeCCCCc
Q 046006           42 QEIVGKKVGLLDGD--SWKNKNSEE-KALEIFRFLSKKKFVLLLDDKWER   88 (180)
Q Consensus        42 ~~~i~~~l~~~~~~--~~~~~~~~~-~~~~l~~~L~~k~~LlVlDdv~~~   88 (180)
                      ..++++.++.....  ....-+..+ ..-.+.+.|-.++-+|+||+--+.
T Consensus       114 v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~  163 (362)
T 2it1_A          114 VREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSN  163 (362)
T ss_dssp             HHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGG
T ss_pred             HHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence            34556666654211  112233333 334566777788889999996544

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=86.96  E-value=0.28  Score=36.03  Aligned_cols=16  Identities=31%  Similarity=0.405  Sum_probs=14.0

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      ..|+|||||.+.++.-
T Consensus        37 ~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           37 PNGAGKSTLGKILAGD   52 (250)
T ss_dssp             STTSSHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHhCC
Confidence            3699999999999874

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=86.96  E-value=0.31  Score=33.61  Aligned_cols=15  Identities=40%  Similarity=0.558  Sum_probs=13.7

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+...
T Consensus        57 ~g~GKSsll~~l~~~   71 (193)
T 2ged_A           57 QNSGKTSLLTLLTTD   71 (193)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHhcC
Confidence            699999999999876

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=86.95  E-value=0.52  Score=36.89  Aligned_cols=47  Identities=11%  Similarity=0.129  Sum_probs=26.0

Q ss_pred             HHHHHHHhCCCC--CCCC-CCcChHHHHHHHHHHhCCCcEEEEEeCCCCc
Q 046006           42 QEIVGKKVGLLD--GDSW-KNKNSEEKALEIFRFLSKKKFVLLLDDKWER   88 (180)
Q Consensus        42 ~~~i~~~l~~~~--~~~~-~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~   88 (180)
                      ..++++.++...  .... .-+..+...-.+.+.|-.++=+|+||+--+.
T Consensus       122 v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~  171 (372)
T 1v43_A          122 VRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSN  171 (372)
T ss_dssp             HHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred             HHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence            455666666531  1111 1122233344566677777789999996554

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=86.94  E-value=0.27  Score=38.62  Aligned_cols=16  Identities=31%  Similarity=0.173  Sum_probs=14.2

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      ++|+|||||++.++..
T Consensus       177 ~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          177 PIDSGKTTLAAALLEL  192 (377)
T ss_dssp             STTSSHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHhh
Confidence            4799999999999875

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=86.90  E-value=0.52  Score=36.65  Aligned_cols=47  Identities=15%  Similarity=0.158  Sum_probs=26.2

Q ss_pred             HHHHHHHhCCCC--CCCCCCcChHH-HHHHHHHHhCCCcEEEEEeCCCCc
Q 046006           42 QEIVGKKVGLLD--GDSWKNKNSEE-KALEIFRFLSKKKFVLLLDDKWER   88 (180)
Q Consensus        42 ~~~i~~~l~~~~--~~~~~~~~~~~-~~~~l~~~L~~k~~LlVlDdv~~~   88 (180)
                      ..++++.++...  ......-+..+ ..-.+...|-.++=+|+||+--+.
T Consensus       126 v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~  175 (355)
T 1z47_A          126 VRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAA  175 (355)
T ss_dssp             HHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCC
T ss_pred             HHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence            345566666531  11122233333 334566677778889999996554

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=86.82  E-value=0.31  Score=32.57  Aligned_cols=15  Identities=40%  Similarity=0.733  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        12 ~~~GKssli~~l~~~   26 (172)
T 2erx_A           12 GGVGKSSLVLRFVKG   26 (172)
T ss_dssp             TTSSHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHcC
Confidence            699999999999865

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=86.82  E-value=0.53  Score=36.67  Aligned_cols=47  Identities=17%  Similarity=0.193  Sum_probs=26.4

Q ss_pred             HHHHHHHhCCCC--CCCCCCcChHH-HHHHHHHHhCCCcEEEEEeCCCCc
Q 046006           42 QEIVGKKVGLLD--GDSWKNKNSEE-KALEIFRFLSKKKFVLLLDDKWER   88 (180)
Q Consensus        42 ~~~i~~~l~~~~--~~~~~~~~~~~-~~~~l~~~L~~k~~LlVlDdv~~~   88 (180)
                      ..++++.++...  ......-+..+ ..-.+.+.|-.++=+|+||+--+.
T Consensus       114 v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~  163 (359)
T 2yyz_A          114 VVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSN  163 (359)
T ss_dssp             HHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred             HHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence            445666666531  11112233333 334566677778889999996554

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=86.80  E-value=0.26  Score=32.90  Aligned_cols=15  Identities=33%  Similarity=0.463  Sum_probs=13.2

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        11 ~~~GKSsli~~l~~~   25 (166)
T 3q72_A           11 PGVGKSALARIFGGV   25 (166)
T ss_dssp             TTSSHHHHHHHHCCC
T ss_pred             CCCCHHHHHHHHcCc
Confidence            799999999998765

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=86.77  E-value=0.33  Score=32.51  Aligned_cols=16  Identities=38%  Similarity=0.486  Sum_probs=13.2

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      .+|+|||||...+...
T Consensus        10 ~~~~GKSsli~~l~~~   25 (169)
T 3q85_A           10 ESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             STTSSHHHHHHHHHCC
T ss_pred             CCCCCHHHHHHHHHhc
Confidence            3799999999998643

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=86.75  E-value=0.53  Score=36.83  Aligned_cols=16  Identities=44%  Similarity=0.472  Sum_probs=13.9

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      ..|+|||||.+.++.-
T Consensus        37 pnGsGKSTLLr~iaGl   52 (372)
T 1g29_1           37 PSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             STTSSHHHHHHHHHTS
T ss_pred             CCCcHHHHHHHHHHcC
Confidence            3799999999999865

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=86.72  E-value=0.32  Score=33.39  Aligned_cols=15  Identities=33%  Similarity=0.445  Sum_probs=13.5

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        16 ~~vGKSsli~~l~~~   30 (184)
T 1m7b_A           16 SQCGKTALLHVFAKD   30 (184)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHhcC
Confidence            799999999999875

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=86.68  E-value=0.33  Score=32.49  Aligned_cols=15  Identities=40%  Similarity=0.581  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        15 ~~~GKssli~~l~~~   29 (170)
T 1z08_A           15 GCVGKTSLVLRYCEN   29 (170)
T ss_dssp             TTSCHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHcC
Confidence            699999999999865

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=86.68  E-value=0.32  Score=32.43  Aligned_cols=15  Identities=20%  Similarity=0.481  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        12 ~~~GKssli~~l~~~   26 (170)
T 1ek0_A           12 AAVGKSSIVLRFVSN   26 (170)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHhcC
Confidence            699999999998865

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=86.65  E-value=0.42  Score=37.06  Aligned_cols=47  Identities=15%  Similarity=0.080  Sum_probs=26.3

Q ss_pred             HHHHHHHhCCCCCC--CCCCcChHH-HHHHHHHHhCCCcEEEEEeCCCCc
Q 046006           42 QEIVGKKVGLLDGD--SWKNKNSEE-KALEIFRFLSKKKFVLLLDDKWER   88 (180)
Q Consensus        42 ~~~i~~~l~~~~~~--~~~~~~~~~-~~~~l~~~L~~k~~LlVlDdv~~~   88 (180)
                      ..++++.++.....  ....-+..+ ..-.+.+.|-.++=+|+||+--+.
T Consensus       108 v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~  157 (348)
T 3d31_A          108 VLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSA  157 (348)
T ss_dssp             HHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTT
T ss_pred             HHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence            34556666654111  112233333 334566677778889999996554

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=86.65  E-value=0.62  Score=36.20  Aligned_cols=27  Identities=30%  Similarity=0.233  Sum_probs=19.9

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIV   31 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~   31 (180)
                      ..|+|||||++.+...+.    .-.+.+.+.
T Consensus       183 ~sGsGKSTll~~l~~~~~----~~~g~I~ie  209 (361)
T 2gza_A          183 ETGSGKTTLMKALMQEIP----FDQRLITIE  209 (361)
T ss_dssp             SSSSCHHHHHHHHHTTSC----TTSCEEEEE
T ss_pred             CCCCCHHHHHHHHHhcCC----CCceEEEEC
Confidence            369999999999988752    234566665

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=86.60  E-value=0.16  Score=36.93  Aligned_cols=18  Identities=33%  Similarity=0.554  Sum_probs=12.8

Q ss_pred             CCCCcHHHHHHHHHcccc
Q 046006            1 MGGVGKTTLLTHINNKFL   18 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~   18 (180)
                      ++|+||||+++.+++.+.
T Consensus        33 ~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           33 IDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             CC---CHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            479999999999998863

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=86.60  E-value=0.56  Score=36.85  Aligned_cols=17  Identities=41%  Similarity=0.452  Sum_probs=14.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||||.+.++.-.
T Consensus        37 psGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           37 PSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             CTTSSHHHHHHHHHTSS
T ss_pred             CCCchHHHHHHHHHcCC
Confidence            47999999999998653

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=86.55  E-value=0.34  Score=32.15  Aligned_cols=15  Identities=40%  Similarity=0.680  Sum_probs=13.2

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        12 ~~~GKSsli~~l~~~   26 (167)
T 1kao_A           12 GGVGKSALTVQFVTG   26 (167)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHcC
Confidence            699999999998765

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=86.54  E-value=0.39  Score=36.57  Aligned_cols=17  Identities=29%  Similarity=0.491  Sum_probs=14.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||++.++.-+
T Consensus        88 ~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           88 PSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             SSCHHHHHHHHHHTTSS
T ss_pred             CCCchHHHHHHHHHcCC
Confidence            36999999999997654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=86.51  E-value=0.33  Score=32.30  Aligned_cols=15  Identities=40%  Similarity=0.685  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        12 ~~~GKssli~~l~~~   26 (167)
T 1c1y_A           12 GGVGKSALTVQFVQG   26 (167)
T ss_dssp             TTSSHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHcC
Confidence            699999999999865

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=86.51  E-value=0.34  Score=32.36  Aligned_cols=15  Identities=27%  Similarity=0.547  Sum_probs=13.6

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        15 ~~~GKSsli~~l~~~   29 (170)
T 1z0j_A           15 TGVGKSSIMWRFVED   29 (170)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHcC
Confidence            699999999999876

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=86.46  E-value=0.32  Score=36.17  Aligned_cols=16  Identities=31%  Similarity=0.526  Sum_probs=14.0

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      ..|+|||||.+.++.-
T Consensus        54 ~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           54 PNGSGKSTLSATLAGR   69 (267)
T ss_dssp             CTTSSHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHhCC
Confidence            3699999999999875

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=86.38  E-value=0.33  Score=33.18  Aligned_cols=15  Identities=40%  Similarity=0.676  Sum_probs=13.6

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        10 ~~~GKSsli~~l~~~   24 (190)
T 2cxx_A           10 SNVGKSTLIYRLTGK   24 (190)
T ss_dssp             TTSSHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHhCc
Confidence            699999999999876

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=86.24  E-value=0.37  Score=32.85  Aligned_cols=15  Identities=27%  Similarity=0.556  Sum_probs=13.7

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+...
T Consensus        13 ~g~GKStLl~~l~~~   27 (172)
T 2gj8_A           13 PNAGKSSLLNALAGR   27 (172)
T ss_dssp             TTSSHHHHHHHHHTS
T ss_pred             CCCCHHHHHHHHhCC
Confidence            799999999999875

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=86.20  E-value=0.35  Score=33.18  Aligned_cols=15  Identities=40%  Similarity=0.687  Sum_probs=13.7

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        32 ~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           32 SNVGKSSLLNALFNR   46 (195)
T ss_dssp             TTSSHHHHHHHHHTS
T ss_pred             CCCCHHHHHHHHHcC
Confidence            699999999999876

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=86.09  E-value=0.32  Score=37.57  Aligned_cols=17  Identities=24%  Similarity=0.196  Sum_probs=15.0

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      =|+||||+++.+.+.+.
T Consensus        16 dGaGKTT~~~~La~~L~   32 (334)
T 1p6x_A           16 YGIGKSTTGRVMASAAS   32 (334)
T ss_dssp             TTSSHHHHHHHHHSGGG
T ss_pred             CCCCHHHHHHHHHHHhc
Confidence            49999999999998863

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=86.08  E-value=0.28  Score=35.35  Aligned_cols=18  Identities=28%  Similarity=0.329  Sum_probs=15.9

Q ss_pred             CCCCcHHHHHHHHHcccc
Q 046006            1 MGGVGKTTLLTHINNKFL   18 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~   18 (180)
                      +.|+||||+++.+.+.+.
T Consensus        13 ~~g~GKst~~~~l~~~l~   30 (216)
T 3tmk_A           13 LDRTGKTTQCNILYKKLQ   30 (216)
T ss_dssp             CSSSSHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHhc
Confidence            479999999999999863

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=86.06  E-value=0.37  Score=32.60  Aligned_cols=15  Identities=47%  Similarity=0.727  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        17 ~~~GKSsli~~l~~~   31 (182)
T 1ky3_A           17 SGVGKTSLMHRYVND   31 (182)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHhC
Confidence            699999999998765

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=86.06  E-value=0.35  Score=32.71  Aligned_cols=15  Identities=40%  Similarity=0.685  Sum_probs=13.5

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        18 ~~~GKssli~~l~~~   32 (181)
T 2fn4_A           18 GGVGKSALTIQFIQS   32 (181)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHhC
Confidence            699999999999876

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=86.04  E-value=0.39  Score=32.44  Aligned_cols=15  Identities=40%  Similarity=0.587  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        15 ~~~GKssl~~~l~~~   29 (178)
T 2hxs_A           15 GASGKTSLTTCFAQE   29 (178)
T ss_dssp             TTSSHHHHHHHHHGG
T ss_pred             CCCCHHHHHHHHHhC
Confidence            699999999998765

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=86.03  E-value=0.36  Score=33.26  Aligned_cols=15  Identities=27%  Similarity=0.636  Sum_probs=13.6

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        32 ~~~GKSsli~~l~~~   46 (195)
T 1svi_A           32 SNVGKSSFINSLINR   46 (195)
T ss_dssp             TTSSHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHhCC
Confidence            699999999999876

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=86.00  E-value=0.34  Score=35.13  Aligned_cols=18  Identities=28%  Similarity=0.340  Sum_probs=15.6

Q ss_pred             CCCCcHHHHHHHHHcccc
Q 046006            1 MGGVGKTTLLTHINNKFL   18 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~   18 (180)
                      +.|+||||+++.+.+.+.
T Consensus        29 ~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           29 IDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             STTSSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            479999999999998863

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=85.97  E-value=0.31  Score=40.88  Aligned_cols=17  Identities=29%  Similarity=0.540  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        60 lsGSGKSTlAr~La~~L   76 (630)
T 1x6v_B           60 LSGAGKTTVSMALEEYL   76 (630)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            58999999999998875

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=85.83  E-value=0.36  Score=33.31  Aligned_cols=15  Identities=20%  Similarity=0.195  Sum_probs=13.0

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        29 ~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           29 LSSGKSALVHRYLTG   43 (184)
T ss_dssp             TTSCHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHhcC
Confidence            699999999888765

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=85.81  E-value=0.32  Score=40.34  Aligned_cols=17  Identities=12%  Similarity=0.200  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus       404 lsGSGKSTiA~~La~~L  420 (573)
T 1m8p_A          404 YMNSGKDAIARALQVTL  420 (573)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999998875

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=85.80  E-value=0.33  Score=40.46  Aligned_cols=17  Identities=24%  Similarity=0.305  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+||||||+.++...
T Consensus        68 p~GtGKTtlar~ia~~l   84 (604)
T 3k1j_A           68 EPGTGKSMLGQAMAELL   84 (604)
T ss_dssp             CTTSSHHHHHHHHHHTS
T ss_pred             CCCCCHHHHHHHHhccC
Confidence            47999999999999875

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=85.74  E-value=0.36  Score=33.43  Aligned_cols=15  Identities=47%  Similarity=0.660  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        32 ~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           32 DNAGKTTLLHMLKND   46 (190)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHhcC
Confidence            799999999999874

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=85.74  E-value=0.34  Score=35.88  Aligned_cols=17  Identities=24%  Similarity=0.366  Sum_probs=14.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||.+.+...+
T Consensus        33 p~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           33 PTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             STTCSHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHhC
Confidence            36999999999987654

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=85.73  E-value=0.33  Score=35.96  Aligned_cols=17  Identities=24%  Similarity=0.399  Sum_probs=14.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||.+.++.-.
T Consensus        54 ~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           54 HTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             STTSSHHHHHHHHTTSS
T ss_pred             CCCCCHHHHHHHHhccC
Confidence            36999999999998763

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=85.70  E-value=0.93  Score=32.85  Aligned_cols=15  Identities=33%  Similarity=0.381  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      .|.|||.+|..++..
T Consensus       117 tG~GKT~~a~~~~~~  131 (237)
T 2fz4_A          117 TGSGKTHVAMAAINE  131 (237)
T ss_dssp             SSTTHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            699999999988776

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=85.70  E-value=0.37  Score=32.11  Aligned_cols=15  Identities=27%  Similarity=0.461  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        15 ~~~GKssli~~l~~~   29 (170)
T 1r2q_A           15 SAVGKSSLVLRFVKG   29 (170)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHcC
Confidence            699999999999864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=85.69  E-value=0.37  Score=33.27  Aligned_cols=15  Identities=33%  Similarity=0.503  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        30 ~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           30 RGAGKSALTVKFLTK   44 (187)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCcHHHHHHHHHhC
Confidence            699999999998765

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=85.67  E-value=0.67  Score=36.20  Aligned_cols=47  Identities=26%  Similarity=0.158  Sum_probs=26.6

Q ss_pred             HHHHHHHhCCCCC--CCCCCcChHH-HHHHHHHHhCCCcEEEEEeCCCCc
Q 046006           42 QEIVGKKVGLLDG--DSWKNKNSEE-KALEIFRFLSKKKFVLLLDDKWER   88 (180)
Q Consensus        42 ~~~i~~~l~~~~~--~~~~~~~~~~-~~~~l~~~L~~k~~LlVlDdv~~~   88 (180)
                      ..++++.++....  .....-+..+ ..-.+.+.|-.++=+|++|+--..
T Consensus       144 v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~  193 (366)
T 3tui_C          144 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSA  193 (366)
T ss_dssp             HHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTT
T ss_pred             HHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence            3445566665311  1122233333 344566777788889999997654

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=85.66  E-value=0.33  Score=37.69  Aligned_cols=16  Identities=25%  Similarity=0.507  Sum_probs=14.0

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      +|+|||||++.++..+
T Consensus       179 nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          179 ESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             TTSHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            6999999999987764

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=85.66  E-value=0.15  Score=38.46  Aligned_cols=17  Identities=24%  Similarity=0.477  Sum_probs=11.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+||||+|+.+...+
T Consensus        13 ~sGSGKSTva~~L~~~l   29 (290)
T 1a7j_A           13 SSGAGTSTVKHTFDQIF   29 (290)
T ss_dssp             CC---CCTHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            37999999999998764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=85.65  E-value=0.37  Score=32.47  Aligned_cols=15  Identities=47%  Similarity=0.707  Sum_probs=13.5

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        24 ~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           24 MGVGKSCLLHQFTEK   38 (179)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHcC
Confidence            699999999999866

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=85.62  E-value=0.38  Score=32.48  Aligned_cols=15  Identities=47%  Similarity=0.499  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        17 ~~~GKssl~~~l~~~   31 (178)
T 2lkc_A           17 VDHGKTTLLDAIRHS   31 (178)
T ss_dssp             TTTTHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHhCC
Confidence            699999999999765

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=85.61  E-value=0.4  Score=32.34  Aligned_cols=15  Identities=40%  Similarity=0.793  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        16 ~~~GKSsli~~l~~~   30 (177)
T 1wms_A           16 GGVGKSSLMNRYVTN   30 (177)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHcC
Confidence            699999999999865

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=85.60  E-value=0.26  Score=40.72  Aligned_cols=17  Identities=29%  Similarity=0.636  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||||++.++..+
T Consensus       377 ~sGSGKSTLar~La~~L  393 (552)
T 3cr8_A          377 LSGAGKSTLARALAARL  393 (552)
T ss_dssp             SSCHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHhh
Confidence            47999999999999875

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=85.59  E-value=0.38  Score=32.13  Aligned_cols=15  Identities=40%  Similarity=0.667  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+...
T Consensus        12 ~~~GKssli~~l~~~   26 (170)
T 1g16_A           12 SGVGKSCLLVRFVED   26 (170)
T ss_dssp             TTSSHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHhC
Confidence            699999999999865

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=85.58  E-value=0.29  Score=33.17  Aligned_cols=15  Identities=20%  Similarity=0.352  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        16 ~~vGKTsli~~l~~~   30 (178)
T 2iwr_A           16 ARSGKSSLIHRFLTG   30 (178)
T ss_dssp             GGGCHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHhC
Confidence            699999999999865

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=85.50  E-value=0.37  Score=32.08  Aligned_cols=15  Identities=33%  Similarity=0.457  Sum_probs=13.1

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus         9 ~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            9 DAAGKTTILYKLKLG   23 (164)
T ss_dssp             TTSSHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHcC
Confidence            699999999999754

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=85.47  E-value=0.65  Score=35.63  Aligned_cols=73  Identities=16%  Similarity=0.139  Sum_probs=40.5

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEEE
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVLL   81 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlV   81 (180)
                      .|+|||||.+.+...+    ..-.+.+.+.-.........    -+.++.     .. .........+...|..++=+++
T Consensus       180 ~GsGKTTll~~l~g~~----~~~~g~i~i~~~~e~~~~~~----~~~i~~-----~~-ggg~~~r~~la~aL~~~p~ili  245 (330)
T 2pt7_A          180 TGSGKTTYIKSIMEFI----PKEERIISIEDTEEIVFKHH----KNYTQL-----FF-GGNITSADCLKSCLRMRPDRII  245 (330)
T ss_dssp             TTSCHHHHHHHGGGGS----CTTSCEEEEESSCCCCCSSC----SSEEEE-----EC-BTTBCHHHHHHHHTTSCCSEEE
T ss_pred             CCCCHHHHHHHHhCCC----cCCCcEEEECCeeccccccc----hhEEEE-----Ee-CCChhHHHHHHHHhhhCCCEEE
Confidence            6999999999998875    22356666653221110000    000000     00 0122334556677788888899


Q ss_pred             EeCCCCc
Q 046006           82 LDDKWER   88 (180)
Q Consensus        82 lDdv~~~   88 (180)
                      +|++.+.
T Consensus       246 ldE~~~~  252 (330)
T 2pt7_A          246 LGELRSS  252 (330)
T ss_dssp             ECCCCST
T ss_pred             EcCCChH
Confidence            9998764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=85.42  E-value=0.39  Score=32.15  Aligned_cols=15  Identities=40%  Similarity=0.607  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+...
T Consensus        16 ~~~GKssl~~~l~~~   30 (171)
T 1upt_A           16 DGAGKTTILYRLQVG   30 (171)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHhcC
Confidence            699999999999765

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=85.42  E-value=0.37  Score=37.59  Aligned_cols=17  Identities=35%  Similarity=0.587  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+||||+++.++..+
T Consensus       165 ~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          165 VNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             CTTSCHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHhhc
Confidence            36999999999998875

>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A

Probab=85.42  E-value=0.18  Score=39.74  Aligned_cols=16  Identities=31%  Similarity=0.507  Sum_probs=7.2

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      ||+||||+|..++..+
T Consensus       121 GGvGKTT~a~nLA~~L  136 (403)
T 3ez9_A          121 GGVSKTVSTVTLAHAL  136 (403)
T ss_dssp             -------CHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHH
Confidence            8999999998888765

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=85.37  E-value=0.41  Score=32.65  Aligned_cols=15  Identities=40%  Similarity=0.647  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        19 ~~~GKSsli~~l~~~   33 (186)
T 2bme_A           19 AGTGKSCLLHQFIEK   33 (186)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHcC
Confidence            699999999999865

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=85.34  E-value=0.41  Score=33.52  Aligned_cols=15  Identities=13%  Similarity=0.147  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||++|.+++..
T Consensus         8 ~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            8 ARSGKSRHAEALIGD   22 (180)
T ss_dssp             TTSSHHHHHHHHHCS
T ss_pred             CCCcHHHHHHHHHhc
Confidence            699999999999865

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=85.34  E-value=0.36  Score=35.59  Aligned_cols=17  Identities=35%  Similarity=0.470  Sum_probs=14.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||.+.++.-.
T Consensus        39 ~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           39 QNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             CSSSSHHHHHHHHTTSS
T ss_pred             CCCCCHHHHHHHHhCCC
Confidence            36999999999998764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=85.34  E-value=0.34  Score=33.24  Aligned_cols=15  Identities=40%  Similarity=0.651  Sum_probs=13.6

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        25 ~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           25 DNAGKTTLLKQLASE   39 (181)
T ss_dssp             TTSSHHHHHHHHCCS
T ss_pred             CCCCHHHHHHHHhcC
Confidence            699999999999876

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=85.32  E-value=0.36  Score=32.59  Aligned_cols=15  Identities=40%  Similarity=0.760  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+...
T Consensus        18 ~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           18 SGVGKSSLLLRFADN   32 (181)
T ss_dssp             TTSCHHHHHHHHCSC
T ss_pred             CCCCHHHHHHHHhcC
Confidence            699999999999765

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=85.31  E-value=0.34  Score=33.84  Aligned_cols=15  Identities=40%  Similarity=0.625  Sum_probs=13.2

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        34 ~~vGKSsLi~~l~~~   48 (198)
T 1f6b_A           34 DNAGKTTLLHMLKDD   48 (198)
T ss_dssp             TTSSHHHHHHHHSCC
T ss_pred             CCCCHHHHHHHHhcC
Confidence            799999999999764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=85.27  E-value=0.4  Score=32.66  Aligned_cols=15  Identities=47%  Similarity=0.747  Sum_probs=13.5

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        27 ~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           27 GGVGKSALTIQFFQK   41 (183)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHhC
Confidence            699999999999866

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=85.26  E-value=0.4  Score=32.59  Aligned_cols=15  Identities=40%  Similarity=0.645  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        27 ~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           27 GGVGKSALTLQFMYD   41 (187)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHhhC
Confidence            699999999999865

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=85.19  E-value=0.43  Score=32.53  Aligned_cols=15  Identities=33%  Similarity=0.596  Sum_probs=13.6

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        13 ~~~GKSsli~~l~~~   27 (189)
T 4dsu_A           13 DGVGKSALTIQLIQN   27 (189)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHhC
Confidence            699999999999866

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=85.14  E-value=0.37  Score=34.16  Aligned_cols=17  Identities=12%  Similarity=0.251  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +.|+||||+|+.++..+
T Consensus        14 ~~GsGk~ti~~~la~~l   30 (201)
T 3fdi_A           14 EFGSGGHLVAKKLAEHY   30 (201)
T ss_dssp             CTTSSHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999999875

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=85.13  E-value=0.36  Score=36.92  Aligned_cols=18  Identities=39%  Similarity=0.636  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHcccc
Q 046006            1 MGGVGKTTLLTHINNKFL   18 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~   18 (180)
                      .+|+||||++..++..+.
T Consensus       113 ~~G~GKTT~~~~LA~~l~  130 (320)
T 1zu4_A          113 VNGTGKTTSLAKMANYYA  130 (320)
T ss_dssp             STTSSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            379999999999988753

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=85.12  E-value=0.29  Score=41.82  Aligned_cols=20  Identities=15%  Similarity=0.250  Sum_probs=16.6

Q ss_pred             ceEeecCCChhhhHHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK  124 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~  124 (180)
                      ..+.+++++.++..+++...
T Consensus       318 ~~i~v~~p~~~~~~~il~~~  337 (758)
T 3pxi_A          318 QPIQVDQPSVDESIQILQGL  337 (758)
T ss_dssp             EEEECCCCCHHHHHHHHHHT
T ss_pred             cEEEeCCCCHHHHHHHHHHH
Confidence            46889999999999998854

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=85.05  E-value=0.41  Score=32.23  Aligned_cols=15  Identities=40%  Similarity=0.543  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        23 ~~~GKssli~~l~~~   37 (179)
T 2y8e_A           23 QSVGKTSLITRFMYD   37 (179)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHcC
Confidence            699999999999855

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=85.04  E-value=0.41  Score=32.71  Aligned_cols=15  Identities=40%  Similarity=0.671  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        20 ~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           20 SGVGKTSVLYQYTDG   34 (195)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHhcC
Confidence            699999999999865

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=85.03  E-value=0.41  Score=32.52  Aligned_cols=15  Identities=47%  Similarity=0.680  Sum_probs=13.2

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        14 ~~~GKssl~~~l~~~   28 (186)
T 1mh1_A           14 GAVGKTCLLISYTTN   28 (186)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHcC
Confidence            699999999998865

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=85.00  E-value=0.34  Score=37.37  Aligned_cols=16  Identities=31%  Similarity=0.212  Sum_probs=12.9

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      -|+||||+++.+.+.+
T Consensus        13 dGsGKTT~~~~La~~L   28 (331)
T 1e2k_A           13 HGMGKTTTTQLLVALG   28 (331)
T ss_dssp             TTSSHHHHHHHHTC--
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            4999999999998875

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=84.99  E-value=0.43  Score=32.76  Aligned_cols=16  Identities=50%  Similarity=0.482  Sum_probs=13.2

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      +|+|||||.+.+.+..
T Consensus        23 ~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           23 GLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             TTSSHHHHHHHHHHTS
T ss_pred             CCCCHHHHHHHHHhhc
Confidence            6999999998877553

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=84.85  E-value=0.48  Score=36.82  Aligned_cols=47  Identities=21%  Similarity=0.276  Sum_probs=26.9

Q ss_pred             HHHHHHHhCCCC--CCCCCCcChHH-HHHHHHHHhCCCcEEEEEeCCCCc
Q 046006           42 QEIVGKKVGLLD--GDSWKNKNSEE-KALEIFRFLSKKKFVLLLDDKWER   88 (180)
Q Consensus        42 ~~~i~~~l~~~~--~~~~~~~~~~~-~~~~l~~~L~~k~~LlVlDdv~~~   88 (180)
                      ..++++.++...  ......-+..+ ..-.+...|-.++=+|+||+--+.
T Consensus       121 v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~  170 (353)
T 1oxx_K          121 VEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSN  170 (353)
T ss_dssp             HHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred             HHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence            455666666541  11122233333 334566677788889999996554

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=84.81  E-value=0.46  Score=32.18  Aligned_cols=15  Identities=27%  Similarity=0.477  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+...
T Consensus        21 ~~~GKSsli~~l~~~   35 (181)
T 2efe_B           21 VGAGKSSLVLRFVKD   35 (181)
T ss_dssp             TTSCHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHcC
Confidence            699999999998865

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=84.78  E-value=0.39  Score=35.65  Aligned_cols=16  Identities=50%  Similarity=0.596  Sum_probs=13.8

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      ..|+|||||.+.++.-
T Consensus        38 ~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           38 PNGSGKTTLLRAISGL   53 (263)
T ss_dssp             CTTSSHHHHHHHHTTS
T ss_pred             CCCCCHHHHHHHHhCC
Confidence            3699999999999765

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=84.70  E-value=0.42  Score=36.35  Aligned_cols=16  Identities=19%  Similarity=0.164  Sum_probs=13.5

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      .+|+|||||++.+..-
T Consensus       134 psGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          134 PPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             SSSSSHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHhhh
Confidence            3799999999998754

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=84.59  E-value=0.43  Score=33.50  Aligned_cols=15  Identities=27%  Similarity=0.310  Sum_probs=13.5

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        16 ~~~GKTsli~~l~~~   30 (214)
T 2fh5_B           16 CDSGKTLLFVRLLTG   30 (214)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHhCC
Confidence            699999999999865

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=84.54  E-value=0.47  Score=32.83  Aligned_cols=15  Identities=40%  Similarity=0.678  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        37 ~~vGKSsli~~l~~~   51 (196)
T 2atv_A           37 AGVGKSALVVRFLTK   51 (196)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHhC
Confidence            699999999999865

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=84.53  E-value=0.45  Score=32.25  Aligned_cols=15  Identities=47%  Similarity=0.689  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        17 ~~~GKssl~~~~~~~   31 (182)
T 3bwd_D           17 GAVGKTCLLISYTSN   31 (182)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHhcC
Confidence            699999999999865

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=84.53  E-value=0.45  Score=32.18  Aligned_cols=15  Identities=47%  Similarity=0.749  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        19 ~~~GKssli~~l~~~   33 (180)
T 2g6b_A           19 SGVGKTCLLVRFKDG   33 (180)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHhC
Confidence            699999999999865

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=84.50  E-value=0.43  Score=35.55  Aligned_cols=16  Identities=31%  Similarity=0.588  Sum_probs=13.8

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      ..|+|||||.+.++..
T Consensus        10 ~nGaGKSTLln~L~g~   25 (270)
T 3sop_A           10 QSGLGKSTLVNTLFKS   25 (270)
T ss_dssp             SSSSSHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHhCC
Confidence            3699999999999865

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=84.45  E-value=0.44  Score=34.15  Aligned_cols=15  Identities=40%  Similarity=0.543  Sum_probs=13.1

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|...+.+.
T Consensus        22 ~~VGKTsLi~r~~~~   36 (216)
T 4dkx_A           22 QSVGKTSLITRFMYD   36 (216)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHhC
Confidence            699999999998765

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=84.43  E-value=0.46  Score=32.27  Aligned_cols=15  Identities=27%  Similarity=0.390  Sum_probs=13.2

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        15 ~~~GKSsli~~l~~~   29 (181)
T 3t5g_A           15 RSVGKSSLTIQFVEG   29 (181)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHcC
Confidence            699999999999854

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=84.41  E-value=0.53  Score=40.24  Aligned_cols=20  Identities=10%  Similarity=0.077  Sum_probs=14.7

Q ss_pred             ceEeecCCChhhhHHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK  124 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~  124 (180)
                      .++.+++++.++-.+++...
T Consensus       655 ~~i~~~~l~~~~~~~i~~~~  674 (758)
T 3pxi_A          655 EIIVFHSLEKKHLTEIVSLM  674 (758)
T ss_dssp             EEEECC--CHHHHHHHHHHH
T ss_pred             eEEecCCCCHHHHHHHHHHH
Confidence            47889999999988887775

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=84.34  E-value=0.47  Score=32.92  Aligned_cols=16  Identities=19%  Similarity=0.316  Sum_probs=13.5

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      +|+|||||.+.+.+.+
T Consensus        29 ~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           29 RRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             TTSSHHHHHHHHHSCC
T ss_pred             CCCCHHHHHHHHHhcC
Confidence            6999999999887753

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=84.21  E-value=0.45  Score=35.49  Aligned_cols=16  Identities=25%  Similarity=0.324  Sum_probs=14.4

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      +||+|||.+|..+++.
T Consensus       112 ppgtGKt~~a~ala~~  127 (267)
T 1u0j_A          112 PATTGKTNIAEAIAHT  127 (267)
T ss_dssp             STTSSHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHhh
Confidence            5899999999999875

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=84.21  E-value=0.45  Score=32.53  Aligned_cols=15  Identities=40%  Similarity=0.652  Sum_probs=13.6

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        27 ~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           27 DNAGKTTILKKFNGE   41 (186)
T ss_dssp             TTSSHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHhcC
Confidence            699999999999876

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=84.17  E-value=0.42  Score=40.10  Aligned_cols=43  Identities=16%  Similarity=0.207  Sum_probs=27.5

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGK   47 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~   47 (180)
                      |||+|||+...++...+  +..  ...+.++..++.....++..+..
T Consensus       213 PPGTGKT~ti~~~I~~l--~~~--~~~ILv~a~TN~AvD~i~erL~~  255 (646)
T 4b3f_X          213 PPGTGKTTTVVEIILQA--VKQ--GLKVLCCAPSNIAVDNLVERLAL  255 (646)
T ss_dssp             CTTSCHHHHHHHHHHHH--HHT--TCCEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH--HhC--CCeEEEEcCchHHHHHHHHHHHh
Confidence            69999998665555443  112  23677777776667777666643

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=84.15  E-value=0.47  Score=32.66  Aligned_cols=15  Identities=47%  Similarity=0.798  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+...
T Consensus        34 ~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           34 SGVGKTNLLSRFTRN   48 (193)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHhcC
Confidence            699999999998875

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=84.14  E-value=0.5  Score=32.40  Aligned_cols=14  Identities=29%  Similarity=0.318  Sum_probs=12.3

Q ss_pred             CCCcHHHHHHHHHc
Q 046006            2 GGVGKTTLLTHINN   15 (180)
Q Consensus         2 gGiGKTtLA~~~~~   15 (180)
                      .|+|||||...++.
T Consensus        35 NGsGKStll~ai~~   48 (182)
T 3kta_A           35 NGSGKSNIGDAILF   48 (182)
T ss_dssp             TTSSHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHH
Confidence            69999999999865

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=83.97  E-value=0.5  Score=33.26  Aligned_cols=15  Identities=33%  Similarity=0.445  Sum_probs=13.6

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+...
T Consensus        37 ~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           37 SQCGKTALLHVFAKD   51 (205)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHhcC
Confidence            799999999999876

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=83.97  E-value=0.48  Score=33.27  Aligned_cols=15  Identities=40%  Similarity=0.658  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        35 ~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           35 AGVGKTCLVRRFTQG   49 (201)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHhC
Confidence            699999999998765

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=83.87  E-value=0.53  Score=32.35  Aligned_cols=15  Identities=20%  Similarity=0.567  Sum_probs=13.7

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+...
T Consensus        16 ~~~GKSsli~~l~~~   30 (208)
T 3clv_A           16 SSVGKSSIVLRLTKD   30 (208)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHhC
Confidence            699999999999876

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=83.84  E-value=0.51  Score=32.76  Aligned_cols=15  Identities=33%  Similarity=0.536  Sum_probs=13.5

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        17 ~~~GKSsli~~l~~~   31 (203)
T 1zbd_A           17 SSVGKTSFLFRYADD   31 (203)
T ss_dssp             TTSSHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHhcC
Confidence            699999999999876

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=83.79  E-value=0.47  Score=35.28  Aligned_cols=29  Identities=14%  Similarity=0.139  Sum_probs=20.1

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVS   33 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~   33 (180)
                      ||+||||+|..++..+..   .-..++.|...
T Consensus        92 gG~GKTt~a~nLA~~lA~---~G~rVLLID~D  120 (271)
T 3bfv_A           92 PGAGKSTIAANLAVAYAQ---AGYKTLIVDGD  120 (271)
T ss_dssp             TTSSHHHHHHHHHHHHHH---TTCCEEEEECC
T ss_pred             CCCcHHHHHHHHHHHHHh---CCCeEEEEeCC
Confidence            899999999999887642   22245566543

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=83.76  E-value=0.53  Score=32.13  Aligned_cols=15  Identities=33%  Similarity=0.490  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        30 ~~~GKSsli~~l~~~   44 (181)
T 2h17_A           30 DNAGKTTILYQFSMN   44 (181)
T ss_dssp             TTSSHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHhcC
Confidence            699999999999865

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=83.75  E-value=0.5  Score=32.77  Aligned_cols=15  Identities=40%  Similarity=0.645  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+...
T Consensus        23 ~~~GKSsli~~l~~~   37 (206)
T 2bov_A           23 GGVGKSALTLQFMYD   37 (206)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHhC
Confidence            699999999999765

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=83.70  E-value=0.45  Score=37.33  Aligned_cols=16  Identities=31%  Similarity=0.212  Sum_probs=13.0

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      -|+||||+++.+...+
T Consensus        58 dGsGKTT~~~~Lae~L   73 (376)
T 1of1_A           58 HGMGKTTTTQLLVALG   73 (376)
T ss_dssp             TTSSHHHHHHHHHC--
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            4999999999999886

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=83.69  E-value=0.53  Score=32.35  Aligned_cols=15  Identities=40%  Similarity=0.709  Sum_probs=13.6

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        25 ~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           25 SGVGKSCLLLRFADD   39 (196)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHcC
Confidence            699999999999876

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=83.69  E-value=0.54  Score=32.68  Aligned_cols=15  Identities=53%  Similarity=0.818  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        17 ~~~GKSsli~~l~~~   31 (207)
T 1vg8_A           17 SGVGKTSLMNQYVNK   31 (207)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHcC
Confidence            699999999999866

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=83.67  E-value=0.5  Score=32.82  Aligned_cols=14  Identities=43%  Similarity=0.596  Sum_probs=12.5

Q ss_pred             CCCcHHHHHHHHHc
Q 046006            2 GGVGKTTLLTHINN   15 (180)
Q Consensus         2 gGiGKTtLA~~~~~   15 (180)
                      +|+|||||...+..
T Consensus        15 ~~vGKSsL~~~~~~   28 (192)
T 2cjw_A           15 QGVGKSTLANIFAG   28 (192)
T ss_dssp             TTSSHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHhc
Confidence            79999999999874

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=83.66  E-value=1.3  Score=33.12  Aligned_cols=29  Identities=14%  Similarity=0.131  Sum_probs=20.5

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVS   33 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~   33 (180)
                      ||+||||+|..++..+.   ..-..++.|...
T Consensus       102 gG~GKTtva~nLA~~lA---~~G~rVLLID~D  130 (286)
T 3la6_A          102 PSIGMTFVCANLAAVIS---QTNKRVLLIDCD  130 (286)
T ss_dssp             SSSSHHHHHHHHHHHHH---TTTCCEEEEECC
T ss_pred             CCCcHHHHHHHHHHHHH---hCCCCEEEEecc
Confidence            89999999999988764   222345666644

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=83.61  E-value=0.51  Score=32.85  Aligned_cols=15  Identities=33%  Similarity=0.368  Sum_probs=13.6

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        33 ~~~GKSsli~~l~~~   47 (201)
T 3oes_A           33 RCVGKTSLAHQFVEG   47 (201)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHhC
Confidence            799999999999876

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=83.55  E-value=0.52  Score=32.36  Aligned_cols=15  Identities=33%  Similarity=0.536  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+...
T Consensus        31 ~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           31 SSVGKTSFLFRYADD   45 (189)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHcC
Confidence            699999999999866

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=83.50  E-value=0.52  Score=32.51  Aligned_cols=15  Identities=47%  Similarity=0.663  Sum_probs=13.6

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        32 ~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           32 GAVGKTCLLLAFSKG   46 (194)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHhcC
Confidence            699999999999876

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=83.41  E-value=0.56  Score=32.36  Aligned_cols=15  Identities=27%  Similarity=0.587  Sum_probs=13.5

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        32 ~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           32 TGVGKSSIVCRFVQD   46 (192)
T ss_dssp             TTSSHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHhcC
Confidence            699999999999866

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=83.36  E-value=0.53  Score=32.41  Aligned_cols=15  Identities=47%  Similarity=0.767  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        30 ~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           30 TGVGKSCLLLQFTDK   44 (191)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHhcC
Confidence            699999999999865

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=83.33  E-value=0.51  Score=37.42  Aligned_cols=17  Identities=41%  Similarity=0.696  Sum_probs=14.5

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||||..++..+
T Consensus        10 ptgsGKttla~~La~~~   26 (409)
T 3eph_A           10 TTGVGKSQLSIQLAQKF   26 (409)
T ss_dssp             CSSSSHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHC
Confidence            47999999999998764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=83.20  E-value=0.57  Score=32.10  Aligned_cols=15  Identities=40%  Similarity=0.771  Sum_probs=13.5

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        24 ~~~GKssli~~l~~~   38 (195)
T 1x3s_A           24 SGVGKSSLLLRFTDD   38 (195)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHcC
Confidence            699999999999876

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=83.13  E-value=0.55  Score=32.28  Aligned_cols=15  Identities=33%  Similarity=0.326  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        31 ~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           31 QYSGKTTFVNVIASG   45 (188)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHcC
Confidence            699999999999865

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=83.11  E-value=0.58  Score=32.07  Aligned_cols=15  Identities=33%  Similarity=0.490  Sum_probs=13.2

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        25 ~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           25 DNAGKTTILYQFSMN   39 (187)
T ss_dssp             TTSSHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHhcC
Confidence            699999999999854

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=83.07  E-value=0.52  Score=35.58  Aligned_cols=29  Identities=17%  Similarity=0.150  Sum_probs=20.1

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVS   33 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~   33 (180)
                      ||+||||+|..++..+..   .-..++.|...
T Consensus       114 gG~GKTtva~nLA~~lA~---~G~rVLLID~D  142 (299)
T 3cio_A          114 PDSGKTFVSSTLAAVIAQ---SDQKVLFIDAD  142 (299)
T ss_dssp             SSSCHHHHHHHHHHHHHH---TTCCEEEEECC
T ss_pred             CCCChHHHHHHHHHHHHh---CCCcEEEEECC
Confidence            799999999999887642   11235556544

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=83.05  E-value=0.62  Score=38.94  Aligned_cols=43  Identities=14%  Similarity=0.237  Sum_probs=28.3

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVG   46 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~   46 (180)
                      ++|+|||+++..+...+.   ..-...+.++..+......+...+.
T Consensus       203 ppGTGKT~~~~~~i~~l~---~~~~~~ilv~a~tn~A~~~l~~~l~  245 (624)
T 2gk6_A          203 PPGTGKTVTSATIVYHLA---RQGNGPVLVCAPSNIAVDQLTEKIH  245 (624)
T ss_dssp             CTTSCHHHHHHHHHHHHH---TSSSCCEEEEESSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH---HcCCCeEEEEeCcHHHHHHHHHHHH
Confidence            589999998888776642   1123467777666656666666554

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=82.99  E-value=0.6  Score=32.03  Aligned_cols=15  Identities=33%  Similarity=0.339  Sum_probs=13.2

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+...
T Consensus        29 ~~~GKSsli~~l~~~   43 (189)
T 1z06_A           29 SNVGKTCLTYRFCAG   43 (189)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHcC
Confidence            699999999999755

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=82.98  E-value=0.53  Score=32.44  Aligned_cols=15  Identities=27%  Similarity=0.539  Sum_probs=13.6

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        26 ~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           26 DNSGKTTIINQVKPA   40 (199)
T ss_dssp             TTSCHHHHHHHHSCC
T ss_pred             CCCCHHHHHHHHhcC
Confidence            699999999999876

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=82.96  E-value=0.58  Score=32.42  Aligned_cols=15  Identities=40%  Similarity=0.689  Sum_probs=12.7

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        29 ~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           29 GAVGKTSLVVSYTTN   43 (201)
T ss_dssp             TTSSHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHhC
Confidence            699999999998865

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=82.84  E-value=0.57  Score=32.66  Aligned_cols=15  Identities=33%  Similarity=0.594  Sum_probs=12.7

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        34 ~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           34 AGTGKSCLLHQFIEN   48 (200)
T ss_dssp             TTSSHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHhC
Confidence            699999999998765

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=82.77  E-value=0.58  Score=32.51  Aligned_cols=15  Identities=27%  Similarity=0.574  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+...
T Consensus        37 ~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           37 AAVGKSSFLMRLCKN   51 (199)
T ss_dssp             TTSSHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHhC
Confidence            699999999999765

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=82.73  E-value=0.55  Score=35.50  Aligned_cols=15  Identities=33%  Similarity=0.589  Sum_probs=12.6

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||.+.++..
T Consensus        27 nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           27 SGLGKSTLINSLFLT   41 (301)
T ss_dssp             TTSSHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHhCC
Confidence            699999999998754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=82.62  E-value=0.58  Score=36.18  Aligned_cols=17  Identities=29%  Similarity=0.552  Sum_probs=14.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .||+|||||+..+...+
T Consensus        87 ~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           87 VPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            37999999999987664

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=82.60  E-value=0.52  Score=32.45  Aligned_cols=15  Identities=33%  Similarity=0.536  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        32 ~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           32 SSVGKTSFLFRYADD   46 (191)
T ss_dssp             TTSSHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHhcC
Confidence            799999999999865

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=82.60  E-value=0.58  Score=35.38  Aligned_cols=16  Identities=31%  Similarity=0.584  Sum_probs=13.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||||.+.+. ..
T Consensus       173 ~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          173 PSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             STTSSHHHHHHHHH-SC
T ss_pred             CCCCCHHHHHHHHH-Hh
Confidence            47999999999999 63

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=82.58  E-value=0.64  Score=32.00  Aligned_cols=15  Identities=53%  Similarity=0.729  Sum_probs=13.5

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        27 ~~~GKssli~~l~~~   41 (194)
T 2atx_A           27 GAVGKTCLLMSYAND   41 (194)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHhcC
Confidence            699999999999865

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=82.49  E-value=0.59  Score=32.98  Aligned_cols=15  Identities=47%  Similarity=0.760  Sum_probs=12.9

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        43 ~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           43 GGCGKTSLLMVFADG   57 (214)
T ss_dssp             TTSSHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHcC
Confidence            699999999999865

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=82.43  E-value=0.55  Score=32.52  Aligned_cols=15  Identities=33%  Similarity=0.457  Sum_probs=13.2

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+...
T Consensus        38 ~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           38 DAAGKTTILYKLKLG   52 (192)
T ss_dssp             TTSSHHHHHHHHCSS
T ss_pred             CCCCHHHHHHHHHhC
Confidence            699999999999754

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=82.38  E-value=0.51  Score=32.62  Aligned_cols=15  Identities=40%  Similarity=0.762  Sum_probs=12.8

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        35 ~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           35 RGVGKTSLMERFTDD   49 (192)
T ss_dssp             TTSSHHHHHHHHCC-
T ss_pred             CCCCHHHHHHHHhcC
Confidence            699999999999865

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=82.38  E-value=0.61  Score=32.50  Aligned_cols=15  Identities=40%  Similarity=0.736  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        17 ~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y           17 SGVGKSCLLLRFSDD   31 (206)
T ss_dssp             TTSSHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHhcC
Confidence            699999999999865

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=82.37  E-value=0.43  Score=32.43  Aligned_cols=15  Identities=40%  Similarity=0.594  Sum_probs=13.0

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+...
T Consensus        27 ~~~GKssli~~l~~~   41 (183)
T 1moz_A           27 DGAGKTTILYRLQIG   41 (183)
T ss_dssp             TTSSHHHHHHHTCCS
T ss_pred             CCCCHHHHHHHHhcC
Confidence            699999999998754

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=82.36  E-value=0.43  Score=33.28  Aligned_cols=14  Identities=43%  Similarity=0.653  Sum_probs=12.3

Q ss_pred             CCCcHHHHHHHHHc
Q 046006            2 GGVGKTTLLTHINN   15 (180)
Q Consensus         2 gGiGKTtLA~~~~~   15 (180)
                      +|+|||||...+..
T Consensus        32 ~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           32 SGVGKSTLAGTFGG   45 (195)
T ss_dssp             TTSSHHHHHHHTCC
T ss_pred             CCCCHHHHHHHHHh
Confidence            69999999999853

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=82.36  E-value=0.55  Score=35.39  Aligned_cols=17  Identities=41%  Similarity=0.579  Sum_probs=14.5

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||.+.++.-.
T Consensus        72 ~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           72 STGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             STTSSHHHHHHHHTTSS
T ss_pred             CCCCcHHHHHHHHhcCC
Confidence            36999999999998764

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=82.27  E-value=0.62  Score=32.63  Aligned_cols=15  Identities=40%  Similarity=0.638  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        18 ~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           18 GAVGKTCMLICYTSN   32 (212)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHhcC
Confidence            699999999999865

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=82.25  E-value=0.6  Score=36.81  Aligned_cols=16  Identities=38%  Similarity=0.449  Sum_probs=13.8

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      ++|+|||||.+.++.-
T Consensus        55 psGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           55 RTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             STTSSHHHHHHHHHTC
T ss_pred             CCCChHHHHHHHHhCC
Confidence            4799999999999864

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=82.24  E-value=0.44  Score=36.27  Aligned_cols=16  Identities=63%  Similarity=0.802  Sum_probs=13.9

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      +.|+|||||.+.+...
T Consensus        12 ~~GaGKTTll~~l~~~   27 (318)
T 1nij_A           12 FLGAGKTTLLRHILNE   27 (318)
T ss_dssp             SSSSSCHHHHHHHHHS
T ss_pred             cCCCCHHHHHHHHHhh
Confidence            4699999999999865

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=82.11  E-value=0.59  Score=33.35  Aligned_cols=15  Identities=20%  Similarity=0.490  Sum_probs=13.6

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+...
T Consensus        38 ~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           38 PNVGKSSFMNIVSRA   52 (228)
T ss_dssp             TTSSHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHhCC
Confidence            699999999999876

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=82.06  E-value=0.64  Score=32.55  Aligned_cols=15  Identities=40%  Similarity=0.612  Sum_probs=13.5

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+...
T Consensus        34 ~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           34 GACGKTCLLIVFSKD   48 (207)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHhcC
Confidence            699999999999875

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=82.00  E-value=0.64  Score=32.43  Aligned_cols=15  Identities=27%  Similarity=0.479  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        38 ~~vGKSsli~~l~~~   52 (201)
T 2hup_A           38 ASVGKTCVVQRFKTG   52 (201)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHhhC
Confidence            699999999999765

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=81.96  E-value=0.65  Score=31.97  Aligned_cols=15  Identities=40%  Similarity=0.733  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+...
T Consensus        17 ~~~GKSsli~~l~~~   31 (199)
T 2gf0_A           17 GGVGKSSLVLRFVKG   31 (199)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCcHHHHHHHHHcC
Confidence            699999999999864

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=81.92  E-value=0.68  Score=32.40  Aligned_cols=15  Identities=47%  Similarity=0.680  Sum_probs=13.2

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        39 ~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           39 GAVGKTCLLISYTTN   53 (204)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHhC
Confidence            799999999998865

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=81.84  E-value=1.1  Score=35.94  Aligned_cols=17  Identities=35%  Similarity=0.432  Sum_probs=14.8

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||||.+.++...
T Consensus       165 ~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          165 GSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             CTTSSHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHhccc
Confidence            37999999999998874

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=81.79  E-value=0.65  Score=33.10  Aligned_cols=14  Identities=43%  Similarity=0.596  Sum_probs=12.6

Q ss_pred             CCCcHHHHHHHHHc
Q 046006            2 GGVGKTTLLTHINN   15 (180)
Q Consensus         2 gGiGKTtLA~~~~~   15 (180)
                      +|+|||||...+..
T Consensus        46 ~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           46 QGVGKSTLANIFAG   59 (211)
T ss_dssp             TTSSHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHh
Confidence            79999999999874

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=81.77  E-value=0.31  Score=34.10  Aligned_cols=16  Identities=25%  Similarity=0.493  Sum_probs=13.6

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      .+|+|||||.+.+...
T Consensus        34 ~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           34 RSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             CTTSSHHHHHTTTCCC
T ss_pred             CCCCCHHHHHHHHhCC
Confidence            3799999999998765

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=81.63  E-value=0.63  Score=37.27  Aligned_cols=17  Identities=35%  Similarity=0.438  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||+++..+...+
T Consensus        53 ~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           53 PAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             CTTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            37999999999998875

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=81.60  E-value=0.75  Score=32.32  Aligned_cols=15  Identities=47%  Similarity=0.727  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        34 ~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           34 SGVGKTTFLYRYTDN   48 (217)
T ss_dssp             TTSSHHHHHHHHHCS
T ss_pred             CCCCHHHHHHHHhcC
Confidence            699999999999865

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=81.57  E-value=0.68  Score=34.17  Aligned_cols=15  Identities=33%  Similarity=0.514  Sum_probs=13.6

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+...
T Consensus        12 ~g~GKTTL~n~l~g~   26 (271)
T 3k53_A           12 PNVGKTTIFNALTGL   26 (271)
T ss_dssp             SSSSHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHhCC
Confidence            799999999999865

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=81.53  E-value=0.75  Score=33.13  Aligned_cols=16  Identities=25%  Similarity=0.310  Sum_probs=14.1

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      .+|+|||||...+...
T Consensus        37 ~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           37 KTGAGKSATGNSILGR   52 (239)
T ss_dssp             CTTSSHHHHHHHHHTS
T ss_pred             CCCCCHHHHHHHHcCC
Confidence            3799999999999876

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=81.51  E-value=0.69  Score=32.21  Aligned_cols=15  Identities=40%  Similarity=0.612  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+...
T Consensus        34 ~~~GKSsli~~l~~~   48 (201)
T 2gco_A           34 GACGKTCLLIVFSKD   48 (201)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHhC
Confidence            699999999999875

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=81.50  E-value=0.62  Score=38.38  Aligned_cols=17  Identities=18%  Similarity=0.315  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus       380 ~~GsGKSTia~~La~~L  396 (546)
T 2gks_A          380 LPCAGKSTIAEILATML  396 (546)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999998875

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=81.41  E-value=1  Score=37.28  Aligned_cols=17  Identities=24%  Similarity=0.431  Sum_probs=14.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||++.+..-+
T Consensus       377 ~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          377 RSGSGKSTIANLFTRFY  393 (582)
T ss_pred             CCCCCHHHHHHHHhcCC
Confidence            36999999999998664

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=81.17  E-value=0.71  Score=32.20  Aligned_cols=15  Identities=40%  Similarity=0.667  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+...
T Consensus        29 ~~~GKSsli~~l~~~   43 (213)
T 3cph_A           29 SGVGKSCLLVRFVED   43 (213)
T ss_dssp             TTSSHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHhC
Confidence            699999999999865

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=80.99  E-value=0.5  Score=32.48  Aligned_cols=15  Identities=27%  Similarity=0.530  Sum_probs=13.5

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+...
T Consensus        30 ~~~GKSsli~~l~~~   44 (190)
T 2h57_A           30 DNSGKTTIINKLKPS   44 (190)
T ss_dssp             TTSSHHHHHHHTSCG
T ss_pred             CCCCHHHHHHHHhcC
Confidence            699999999999876

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=80.98  E-value=0.65  Score=39.63  Aligned_cols=17  Identities=29%  Similarity=0.520  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||++|+.+++..
T Consensus       496 ~~GtGKT~la~~la~~l  512 (758)
T 1r6b_X          496 PTGVGKTEVTVQLSKAL  512 (758)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHh
Confidence            47999999999998874

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=80.93  E-value=0.71  Score=35.73  Aligned_cols=17  Identities=53%  Similarity=0.567  Sum_probs=14.8

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||.+.+.+..
T Consensus        79 ~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           79 GSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             CTTSSHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHhcCC
Confidence            36999999999999884

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=80.78  E-value=0.78  Score=32.41  Aligned_cols=15  Identities=27%  Similarity=0.384  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        36 ~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           36 VQCGKTAMLQVLAKD   50 (214)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHhcC
Confidence            699999999999765

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=80.75  E-value=0.63  Score=33.65  Aligned_cols=17  Identities=12%  Similarity=0.179  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +.|+||||+|+.++..+
T Consensus        22 ~~gsGk~~i~~~la~~l   38 (223)
T 3hdt_A           22 EYGSGGRIVGKKLAEEL   38 (223)
T ss_dssp             CTTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            47999999999998875

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=80.56  E-value=0.77  Score=35.76  Aligned_cols=17  Identities=35%  Similarity=0.499  Sum_probs=14.7

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||||.+.+....
T Consensus       223 ~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          223 QSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             CTTSSHHHHHHHHHCCS
T ss_pred             CCCccHHHHHHHHhccc
Confidence            47999999999998764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=80.51  E-value=1.2  Score=36.85  Aligned_cols=17  Identities=29%  Similarity=0.509  Sum_probs=14.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||++.++.-+
T Consensus       377 ~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          377 RSGSGKSTIASLITRFY  393 (582)
T ss_dssp             CTTSSHHHHHHHHTTTT
T ss_pred             CCCCCHHHHHHHHhhcc
Confidence            36999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	180
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	6e-20

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 82.2 bits (202), Expect = 6e-20
 Identities = 21/192 (10%), Positives = 53/192 (27%), Gaps = 34/192 (17%)

Query: 1   MGGVGKTTLLTHI-NNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKN 59
             G GK+ + +   +    +   ++D ++W+  S               + L   D   N
Sbjct: 52  RAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLN 111

Query: 60  KNS-------EEKALEIFRFLSKKKFVLLLDDKWERVDLNKGLFVCGLV----------- 101
             S         K +     + +   + + DD  +   +     +               
Sbjct: 112 FPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISN 171

Query: 102 ---EANKNFKVECLSDNDAWELLRQK------------LAQTVAKKCVGLPLALITIGRA 146
              +  +  +V  L  ++ ++ L               +     +   G P  L+   ++
Sbjct: 172 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKS 231

Query: 147 IACKRTPREWSL 158
              K   +   L
Sbjct: 232 CEPKTFEKMAQL 243

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	180
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.97
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	98.85
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	98.09
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.0
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.86
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.85
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.82
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	97.62
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.62
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.58
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.56
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.46
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.41
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.41
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.37
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.35
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	97.31
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	97.21
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.16
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.14
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.09
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.89
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.88
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.74
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.73
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.73
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.73
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	96.54
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.52
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.5
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.44
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.41
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.39
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.32
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.19
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.17
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.14
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.11
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	95.99
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	95.99
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	95.93
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	95.86
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	95.85
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	95.84
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	95.82
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	95.74
d1vmaa2	213	GTPase domain of the signal recognition particle r	95.72
d1ls1a2	207	GTPase domain of the signal sequence recognition p	95.67
d1okkd2	207	GTPase domain of the signal recognition particle r	95.56
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.46
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	95.45
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	95.44
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.44
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	95.36
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.21
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	95.19
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.19
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	95.18
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.15
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	95.12
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	95.05
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.04
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.03
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.0
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	94.99
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	94.94
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	94.92
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	94.88
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	94.77
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	94.75
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	94.52
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.49
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	94.47
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	94.46
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	94.44
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	94.42
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	94.26
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.25
d1j8yf2	211	GTPase domain of the signal sequence recognition p	94.12
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	94.08
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	94.04
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	93.95
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.9
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	93.82
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	93.76
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	93.72
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	93.29
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	93.22
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	93.21
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	93.18
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	93.15
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	93.05
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	93.01
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	92.63
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	92.58
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	92.56
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	92.5
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	92.5
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	91.83
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	91.68
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	91.66
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	91.64
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	91.47
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	91.29
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	91.24
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	91.01
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	90.91
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	90.77
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	90.39
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	90.26
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	90.13
d1g2912	240	Maltose transport protein MalK, N-terminal domain	90.13
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	90.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	89.97
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	89.92
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	89.92
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	89.89
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	89.88
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	89.85
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	89.84
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	89.83
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	89.79
d2awna2	232	Maltose transport protein MalK, N-terminal domain	89.77
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	89.76
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	89.75
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	89.65
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	89.6
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	89.59
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	89.54
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	89.54
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	89.5
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	89.47
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	89.37
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	89.33
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	89.3
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	89.29
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	89.15
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	89.03
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	88.98
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	88.94
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	88.88
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	88.86
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	88.75
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	88.75
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	88.7
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	88.66
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	88.64
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	88.62
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	88.61
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	88.47
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	88.43
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	88.19
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	88.12
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	88.09
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	87.93
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	87.91
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	87.88
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	87.87
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	87.86
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	87.81
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	87.49
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	87.47
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	87.45
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	87.44
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	87.41
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	87.38
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	87.36
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	87.33
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	87.15
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	86.96
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	86.92
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	86.8
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	86.72
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	86.69
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	86.62
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	86.6
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	86.59
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	86.57
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	86.48
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	86.28
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	86.22
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	86.14
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	86.1
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	86.03
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	86.01
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	85.93
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	85.86
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	85.82
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	85.59
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	85.54
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	85.42
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	85.29
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	85.18
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	84.81
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	84.8
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	84.61
d1nrjb_	209	Signal recognition particle receptor beta-subunit	84.37
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	83.99
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	83.97
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	83.93
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	83.86
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	83.59
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	83.22
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	83.14
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	82.5
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	82.28
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	82.17
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	82.16
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	82.09
d2fh5b1	207	Signal recognition particle receptor beta-subunit	82.02
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	81.73
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	81.68
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	81.67
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	81.53
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	81.52
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	80.51

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=1.3e-30  Score=197.27  Aligned_cols=155  Identities=12%  Similarity=0.140  Sum_probs=117.3

Q ss_pred             CCCCcHHHHHHHHHcccc-cccCCCCeEEEEEeCCCCCHHHHHHHHHH---HhCCCCCC----CCCCcChHHHHHHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFL-VSSTDFDCVIWIVVSKDLQLEKIQEIVGK---KVGLLDGD----SWKNKNSEEKALEIFRF   72 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~-~~~~~f~~~~wv~~~~~~~~~~~~~~i~~---~l~~~~~~----~~~~~~~~~~~~~l~~~   72 (180)
                      |||+||||||+++|++.. ....+|++++|+++++.++...+...+..   .++.....    .....+.......+.+.
T Consensus        52 mgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (277)
T d2a5yb3          52 RAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNAL  131 (277)
T ss_dssp             STTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHHHHHHHHHHHHhcchhhcCCccchhhhhHHHHHHHHHHH
Confidence            899999999999998742 25678999999999998887766555544   33322111    11122334445568888


Q ss_pred             hCCCcEEEEEeCCCCcccccc----c---------cccccccccc-ceEeecCCChhhhHHHHHHH------------HH
Q 046006           73 LSKKKFVLLLDDKWERVDLNK----G---------LFVCGLVEAN-KNFKVECLSDNDAWELLRQK------------LA  126 (180)
Q Consensus        73 L~~k~~LlVlDdv~~~~~l~~----g---------~~~~~~~~~~-~~~~l~~L~~~~a~~Lf~~~------------~~  126 (180)
                      +.++|+|+||||||+.++++.    |         ..++..+... ..|++++|+.+||++||.++            .+
T Consensus       132 L~~kr~LlVLDDv~~~~~~~~~~~~~srilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~  211 (277)
T d2a5yb3         132 IDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVL  211 (277)
T ss_dssp             TTSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHH
T ss_pred             hccCCeeEecchhhHHhhhhhhcccCceEEEEeehHHHHHhcCCCCceEECCCCCHHHHHHHHHHHhCCccCchhhHHHH
Confidence            999999999999999988765    3         4444444333 67999999999999999876            67


Q ss_pred             HHHHHHcCCChHHHHHHHHHhcCCCCCCce
Q 046006          127 QTVAKKCVGLPLALITIGRAIACKRTPREW  156 (180)
Q Consensus       127 ~~i~~~c~g~PLal~~~~~~L~~~~~~~~w  156 (180)
                      ++|+++|+|+||||+++|+.|+. ++.+.|
T Consensus       212 ~~iv~~c~GlPLAl~~ig~~l~~-k~~~~~  240 (277)
T d2a5yb3         212 NKTIELSSGNPATLMMFFKSCEP-KTFEKM  240 (277)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTCCS-SSHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHhcc-CCHHHH
Confidence            89999999999999999999976 455555

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.85  E-value=1.7e-08  Score=73.65  Aligned_cols=45  Identities=24%  Similarity=0.226  Sum_probs=38.9

Q ss_pred             ceEeecCCChhhhHHHHHHH---------HHHHHHHHcCCChHHHHHHHHHhcC
Q 046006          105 KNFKVECLSDNDAWELLRQK---------LAQTVAKKCVGLPLALITIGRAIAC  149 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~---------~~~~i~~~c~g~PLal~~~~~~L~~  149 (180)
                      ..+.|++++.+++.+++.+.         ..++|++.++|+|..+..++..+..
T Consensus       201 ~~i~L~~l~~~e~~~~l~~~~~~~~~~~~~~~~i~~~~~G~P~~L~~~~~~~~~  254 (283)
T d2fnaa2         201 STVELKPFSREEAIEFLRRGFQEADIDFKDYEVVYEKIGGIPGWLTYFGFIYLD  254 (283)
T ss_dssp             EEEEECCCCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred             eEEeeCCCCHHHHHHHHHhhhhhcCCCHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            46789999999999999876         5678999999999999999877643

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.09  E-value=6.4e-05  Score=54.17  Aligned_cols=86  Identities=14%  Similarity=0.108  Sum_probs=58.7

Q ss_pred             CCCCcHHHHHHHHHcccccc---cCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh--CC
Q 046006            1 MGGVGKTTLLTHINNKFLVS---STDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL--SK   75 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L--~~   75 (180)
                      ++|+|||++++.+++.+...   ........+++.............+...++.. . .............+.+..  .+
T Consensus        54 ppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~~~~  131 (287)
T d1w5sa2          54 RVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYP-I-QVRGAPALDILKALVDNLYVEN  131 (287)
T ss_dssp             CCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCC-C-CCTTCCHHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhhcccccCCceeeeeccccccchhhHHHHHhhhcccc-c-ccccchHHHHHHHHHHHHHhcc
Confidence            58999999999999875311   11223456777777788888888888888654 1 223345556666666655  35


Q ss_pred             CcEEEEEeCCCCc
Q 046006           76 KKFVLLLDDKWER   88 (180)
Q Consensus        76 k~~LlVlDdv~~~   88 (180)
                      ...++++|.++..
T Consensus       132 ~~~~~iide~d~l  144 (287)
T d1w5sa2         132 HYLLVILDEFQSM  144 (287)
T ss_dssp             CEEEEEEESTHHH
T ss_pred             CccccceeEEEEe
Confidence            6788888988754

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.00  E-value=4.7e-05  Score=54.63  Aligned_cols=118  Identities=13%  Similarity=0.149  Sum_probs=77.8

Q ss_pred             CCCCcHHHHHHHHHcccccccCCC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC--CCc
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDF-DCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS--KKK   77 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~--~k~   77 (180)
                      ++|+|||++|+.+++.+.   ..+ ...++++.............+....+.. . .............+.+.+.  ...
T Consensus        51 ppGtGKT~l~~~l~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~  125 (276)
T d1fnna2          51 RPGTGKTVTLRKLWELYK---DKTTARFVYINGFIYRNFTAIIGEIARSLNIP-F-PRRGLSRDEFLALLVEHLRERDLY  125 (276)
T ss_dssp             CTTSSHHHHHHHHHHHHT---TSCCCEEEEEETTTCCSHHHHHHHHHHHTTCC-C-CSSCCCHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCHHHHHHHHHHHHh---cccCCcEEEecchhhhhhhhhhhhhHHhhhhh-h-hhhccchhHHHHHHHHHHhhcccc
Confidence            589999999999998863   222 2356677777788888899999888664 2 2333455566666666553  467


Q ss_pred             EEEEEeCCCCcccccc--------------c-------------------ccccccccccceEeecCCChhhhHHHHHHH
Q 046006           78 FVLLLDDKWERVDLNK--------------G-------------------LFVCGLVEANKNFKVECLSDNDAWELLRQK  124 (180)
Q Consensus        78 ~LlVlDdv~~~~~l~~--------------g-------------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~  124 (180)
                      ...++|++++......              .                   ..+.... ....+.+.+++.++..+++.++
T Consensus       126 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~-~~~~i~~~~~~~~e~~~il~~r  204 (276)
T d1fnna2         126 MFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIM-GKYVIRFSPYTKDQIFDILLDR  204 (276)
T ss_dssp             EEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHH-TTCEEECCCCBHHHHHHHHHHH
T ss_pred             cccchhHHHHhhhhhhhhHHHHHhccccccccceEEeecCCchhhhhhcchhhhhhh-cchhccccchhHHHHHHHHHHH
Confidence            7888888877532111              0                   0011111 1235789999999999998876

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.86  E-value=2.1e-05  Score=55.52  Aligned_cols=121  Identities=18%  Similarity=0.134  Sum_probs=69.4

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL   80 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll   80 (180)
                      ++|+||||+|+.+++.+. ....-...+-++.+...+...+...+....... . ..               ..++.-++
T Consensus        44 p~G~GKTt~a~~la~~l~-~~~~~~~~~~~n~~~~~~~~~i~~~~~~~~~~~-~-~~---------------~~~~~kvi  105 (224)
T d1sxjb2          44 MPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDVVRNQIKHFAQKK-L-HL---------------PPGKHKIV  105 (224)
T ss_dssp             STTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBC-C-CC---------------CTTCCEEE
T ss_pred             CCCCCchhhHHHHHHHHh-ccccccccccccccccCCceehhhHHHHHHHhh-c-cC---------------CCcceEEE
Confidence            479999999999988752 111111233444454444444433333222111 0 00               02345688


Q ss_pred             EEeCCCCcccccc----------c------------ccccc-cccccceEeecCCChhhhHHHHHHH-----------HH
Q 046006           81 LLDDKWERVDLNK----------G------------LFVCG-LVEANKNFKVECLSDNDAWELLRQK-----------LA  126 (180)
Q Consensus        81 VlDdv~~~~~l~~----------g------------~~~~~-~~~~~~~~~l~~L~~~~a~~Lf~~~-----------~~  126 (180)
                      |+|+++....-..          .            ..+.. -.+....+++++++.++-...+.+.           ..
T Consensus       106 iiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l~sr~~~i~~~~~~~~~i~~~l~~i~~~e~~~i~~~~l  185 (224)
T d1sxjb2         106 ILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGL  185 (224)
T ss_dssp             EEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHH
T ss_pred             EEecccccchhHHHHHhhhccccccceeeeeccCchhhhhhHHHHHHHHhhhcccchhhhHHHHHHHHHhcccCCCHHHH
Confidence            8999887643211          0            11111 1122357899999999999888765           68


Q ss_pred             HHHHHHcCCChHH
Q 046006          127 QTVAKKCVGLPLA  139 (180)
Q Consensus       127 ~~i~~~c~g~PLa  139 (180)
                      ..|++.|+|-+--
T Consensus       186 ~~I~~~s~Gd~R~  198 (224)
T d1sxjb2         186 EAIIFTAEGDMRQ  198 (224)
T ss_dssp             HHHHHHHTTCHHH
T ss_pred             HHHHHHcCCcHHH
Confidence            8999999997653

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.85  E-value=5.8e-05  Score=53.96  Aligned_cols=131  Identities=13%  Similarity=0.019  Sum_probs=73.8

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL   80 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll   80 (180)
                      ++|+||||+|+.++++..     + ..++++.+...+...+.. ..+..... ..........    .......++..++
T Consensus        60 PpG~GKTt~a~~la~~~~-----~-~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~vi  127 (253)
T d1sxja2          60 PPGIGKTTAAHLVAQELG-----Y-DILEQNASDVRSKTLLNA-GVKNALDN-MSVVGYFKHN----EEAQNLNGKHFVI  127 (253)
T ss_dssp             STTSSHHHHHHHHHHHTT-----C-EEEEECTTSCCCHHHHHH-TGGGGTTB-CCSTTTTTC--------CCSSTTSEEE
T ss_pred             CCCCCHHHHHHHHHHHHH-----h-hhhccccccchhhHHHHH-HHHHHhhc-chhhhhhhhh----hhcccccccceEE
Confidence            589999999999999842     2 245566655544443322 22222111 1001000000    0111234567889


Q ss_pred             EEeCCCCccccccc-------------------------ccccccccccceEeecCCChhhhHHHHHHH-----------
Q 046006           81 LLDDKWERVDLNKG-------------------------LFVCGLVEANKNFKVECLSDNDAWELLRQK-----------  124 (180)
Q Consensus        81 VlDdv~~~~~l~~g-------------------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~-----------  124 (180)
                      ++|+++....-..+                         ..+.........+.+.+++.++-...+...           
T Consensus       128 ~ide~~~~~~~~~~~~~~~~~~~~~~~~~ii~i~~~~~~~~~~~l~~~~~~i~f~~~~~~~i~~~l~~i~~~e~i~i~~~  207 (253)
T d1sxja2         128 IMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN  207 (253)
T ss_dssp             EECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT
T ss_pred             EeeeccccccchhhhhHHHhhhhcccccccccccccccccccccccceeeeeeccccchhHHHHHHHHHHHHhCCCCCHH
Confidence            99998765432220                         111111122357889999999988888775           


Q ss_pred             HHHHHHHHcCCCh-HHHHHH
Q 046006          125 LAQTVAKKCVGLP-LALITI  143 (180)
Q Consensus       125 ~~~~i~~~c~g~P-Lal~~~  143 (180)
                      ...+|++.++|-. .|+..+
T Consensus       208 ~l~~i~~~s~GDiR~ai~~L  227 (253)
T d1sxja2         208 VIDRLIQTTRGDIRQVINLL  227 (253)
T ss_dssp             HHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHH
Confidence            6889999999965 554433

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.82  E-value=5.2e-06  Score=59.03  Aligned_cols=135  Identities=13%  Similarity=0.137  Sum_probs=72.5

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL   80 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll   80 (180)
                      ++|+||||+|+.+++++............++.+...........+-......    ......    ..+......+.-++
T Consensus        41 p~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~----~~~~~~~~~~~~vi  112 (237)
T d1sxjd2          41 PPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLT----VSKPSK----HDLENYPCPPYKII  112 (237)
T ss_dssp             STTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSC----CCCCCT----THHHHSCCCSCEEE
T ss_pred             CCCCChHHHHHHHHHHHcCCcccccchhheeccccccchHHHHHHHHHhhhh----hhhhhH----HHHhhccccCceEE
Confidence            4899999999999887421111122344455555555444333332221111    000111    11222233444578


Q ss_pred             EEeCCCCcccccc---------c--------------ccccccccccceEeecCCChhhhHHHHHHH-----------HH
Q 046006           81 LLDDKWERVDLNK---------G--------------LFVCGLVEANKNFKVECLSDNDAWELLRQK-----------LA  126 (180)
Q Consensus        81 VlDdv~~~~~l~~---------g--------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~-----------~~  126 (180)
                      |+|+++....-..         .              ............+.+++++.++..+++.+.           ..
T Consensus       113 iiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~l~sr~~~i~f~~~~~~~~~~~L~~i~~~e~i~i~~~~l  192 (237)
T d1sxjd2         113 ILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVL  192 (237)
T ss_dssp             EETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHH
T ss_pred             EEecccccCHHHHHHHhhccccccccccccccccccccccccccchhhhhccccccccccchhhhhhhhhhcCcCCHHHH
Confidence            9999876532111         0              000001111256889999999999998876           77


Q ss_pred             HHHHHHcCCCh-HHHHHH
Q 046006          127 QTVAKKCVGLP-LALITI  143 (180)
Q Consensus       127 ~~i~~~c~g~P-Lal~~~  143 (180)
                      +.|++.++|-+ .|+..+
T Consensus       193 ~~ia~~s~gd~R~ai~~L  210 (237)
T d1sxjd2         193 ERILDISAGDLRRGITLL  210 (237)
T ss_dssp             HHHHHHTSSCHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHH
Confidence            89999998754 445443

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=2.6e-05  Score=54.72  Aligned_cols=36  Identities=14%  Similarity=0.054  Sum_probs=30.6

Q ss_pred             ceEeecCCChhhhHHHHHHH------HHHHHHHHcCCChHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK------LAQTVAKKCVGLPLAL  140 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~------~~~~i~~~c~g~PLal  140 (180)
                      ..+.+.+++.++....+.+.      ....|++.++|.|-.+
T Consensus       160 ~~i~~~~~~~~~~~~~L~~~~~~~~~~~~~i~~~s~Gs~r~a  201 (207)
T d1a5ta2         160 RLHYLAPPPEQYAVTWLSREVTMSQDALLAALRLSAGSPGAA  201 (207)
T ss_dssp             EEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHH
T ss_pred             EEEecCCCCHHHHHHHHHHcCCCCHHHHHHHHHHcCCCHHHH
Confidence            57889999999999998877      6888999999988644

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=0.00024  Score=51.30  Aligned_cols=35  Identities=14%  Similarity=0.172  Sum_probs=28.6

Q ss_pred             ccceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006          103 ANKNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP  137 (180)
Q Consensus       103 ~~~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P  137 (180)
                      .+..+.++..+.++-.++|..+          ....|++.+.|+-
T Consensus       163 fd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s  207 (258)
T d1e32a2         163 FDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHV  207 (258)
T ss_dssp             SCEEEECCCCCHHHHHHHHHHTTTTSCBCTTCCHHHHHHHCTTCC
T ss_pred             ccceeECCCCCHHHHHHHhhhhccCcccccccchhhhhhcccCCC
Confidence            3468889999999999999877          4678999998853

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.58  E-value=4.2e-05  Score=53.91  Aligned_cols=33  Identities=9%  Similarity=0.084  Sum_probs=27.9

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCCh
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLP  137 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~P  137 (180)
                      ..+.+.+++.++-.+.+.+.           ..+.|++.++|-.
T Consensus       151 ~~i~~~~~~~~~i~~~l~~I~~~e~i~i~~~~l~~i~~~s~Gd~  194 (227)
T d1sxjc2         151 TRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDM  194 (227)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCH
T ss_pred             hhhccccccccccccccccccccccccCCHHHHHHHHHHcCCcH
Confidence            57889999999998888875           6788999999864

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=0.0004  Score=50.06  Aligned_cols=34  Identities=15%  Similarity=0.175  Sum_probs=27.9

Q ss_pred             cceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006          104 NKNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP  137 (180)
Q Consensus       104 ~~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P  137 (180)
                      +..+.++..+.++-.++|+.+          ....+++.+.|+.
T Consensus       174 d~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s  217 (256)
T d1lv7a_         174 DRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFS  217 (256)
T ss_dssp             CEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCC
T ss_pred             CEEEECCCcCHHHHHHHHHHhccCCCcCcccCHHHHHHhCCCCC
Confidence            467889999999999999887          5678888888864

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=0.0018  Score=46.76  Aligned_cols=107  Identities=14%  Similarity=0.249  Sum_probs=61.2

Q ss_pred             CCCCcHHHHHHHHHcccccc--c-CCCCeEEEE-EeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC-C
Q 046006            1 MGGVGKTTLLTHINNKFLVS--S-TDFDCVIWI-VVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS-K   75 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~--~-~~f~~~~wv-~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~-~   75 (180)
                      .+|+|||+|+..++.+...-  . ...+..+|. +.+.      +       +    .........++....+.+.+. .
T Consensus        47 ~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~------l-------i----ag~~~~g~~e~r~~~i~~~~~~~  109 (268)
T d1r6bx2          47 ESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS------L-------L----AGTKYRGDFEKRFKALLKQLEQD  109 (268)
T ss_dssp             CTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------------------CCCCCSSCHHHHHHHHHHHHSSS
T ss_pred             CCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeech------H-------h----ccCccchhHHHHHHHHHHHhhcc
Confidence            48999999999988764211  1 112345553 3221      0       1    111223456666666666664 5


Q ss_pred             CcEEEEEeCCCCcccc--------------cc----c-------------ccc----cccccccceEeecCCChhhhHHH
Q 046006           76 KKFVLLLDDKWERVDL--------------NK----G-------------LFV----CGLVEANKNFKVECLSDNDAWEL  120 (180)
Q Consensus        76 k~~LlVlDdv~~~~~l--------------~~----g-------------~~~----~~~~~~~~~~~l~~L~~~~a~~L  120 (180)
                      ++.++++||+...-..              ++    |             ...    .....-...+.+++++.+++.++
T Consensus       110 ~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~rg~i~vIgatT~eey~~~~e~d~al~rrF~~I~V~Eps~e~t~~I  189 (268)
T d1r6bx2         110 TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQI  189 (268)
T ss_dssp             SCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHH
T ss_pred             CCceEEecchHHHhcCCCCCCccccHHHHhhHHHhCCCCeEEEeCCHHHHHHHHhhcHHHHhhhcccccCCCCHHHHHHH
Confidence            6789999998765211              11    2             000    00111236789999999999999


Q ss_pred             HHHH
Q 046006          121 LRQK  124 (180)
Q Consensus       121 f~~~  124 (180)
                      +...
T Consensus       190 L~~~  193 (268)
T d1r6bx2         190 INGL  193 (268)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9765

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.41  E-value=0.00032  Score=50.28  Aligned_cols=34  Identities=15%  Similarity=0.233  Sum_probs=28.1

Q ss_pred             cceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006          104 NKNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP  137 (180)
Q Consensus       104 ~~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P  137 (180)
                      +..+.+++.+.++-.++|+.+          ....+++.|.|..
T Consensus       171 ~~~i~~~~P~~~eR~~il~~~l~~~~~~~~~~~~~la~~t~g~s  214 (247)
T d1ixza_         171 DRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV  214 (247)
T ss_dssp             CEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCC
T ss_pred             cEEEEECCcCHHHHHHHHHHHhcccCCccccCHHHHHHHCCCCC
Confidence            467889999999999999887          5678888888753

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.41  E-value=0.00087  Score=47.27  Aligned_cols=38  Identities=8%  Similarity=0.010  Sum_probs=29.8

Q ss_pred             cceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHH
Q 046006          104 NKNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALI  141 (180)
Q Consensus       104 ~~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~  141 (180)
                      ...+.+...+.++..+++...           ....|++.++|.+-...
T Consensus       157 ~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~l~~ia~~s~gd~R~a~  205 (239)
T d1ixsb2         157 GIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAK  205 (239)
T ss_dssp             SEEEECCCCCHHHHHHHHHHHHGGGCCCBCHHHHHHHHHHTTSSHHHHH
T ss_pred             ceeeEeeccChhhhhHHHHHHHHHhCCccchHHHHHHHHHcCCCHHHHH
Confidence            356778888888888887766           78899999999875543

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.37  E-value=0.00042  Score=50.13  Aligned_cols=35  Identities=11%  Similarity=0.116  Sum_probs=27.8

Q ss_pred             cceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCChH
Q 046006          104 NKNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLPL  138 (180)
Q Consensus       104 ~~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~PL  138 (180)
                      ...++++..+.++-.++|+.+          ...+|++.+.|...
T Consensus       170 ~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~l~~la~~t~g~s~  214 (265)
T d1r7ra3         170 DQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSG  214 (265)
T ss_dssp             EEEEECCCCCCHHHHHHHHHHTTCC----CCCCHHHHHHHCSSCC
T ss_pred             cEEEEecchHHHHHHHHHHHHhccCCchhhhhHHHHHhcCCCCCH
Confidence            467899999999999999877          45678888877643

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=0.0007  Score=47.96  Aligned_cols=39  Identities=15%  Similarity=0.215  Sum_probs=29.7

Q ss_pred             ceEeecCCChhhhHHHHHHH------------HHHHHHHHcCCChH-HHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK------------LAQTVAKKCVGLPL-ALITI  143 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~------------~~~~i~~~c~g~PL-al~~~  143 (180)
                      ..+++.+++.++..+.+...            ..+.|++.+.|-+- |+..+
T Consensus       183 ~~i~~~~~~~~~~~~~l~~i~~~e~~~~~~~~~l~~i~~~s~Gd~R~ai~~L  234 (252)
T d1sxje2         183 LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLML  234 (252)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred             heeeecccchhhHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCcHHHHHHHH
Confidence            46789999999999988765            56788999988764 34433

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.31  E-value=0.00088  Score=46.82  Aligned_cols=28  Identities=32%  Similarity=0.235  Sum_probs=20.3

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIV   31 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~   31 (180)
                      .+|+|||.|++++++...   .....+++++
T Consensus        44 ~~G~GKTHLl~A~~~~~~---~~~~~~~~~~   71 (213)
T d1l8qa2          44 SVGTGKTHLLQAAGNEAK---KRGYRVIYSS   71 (213)
T ss_dssp             SSSSSHHHHHHHHHHHHH---HTTCCEEEEE
T ss_pred             CCCCcHHHHHHHHHHHhc---cCccceEEec
Confidence            379999999999999853   2233456653

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.0013  Score=46.46  Aligned_cols=39  Identities=21%  Similarity=0.171  Sum_probs=31.1

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChH-HHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPL-ALITI  143 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PL-al~~~  143 (180)
                      ..+.+.+++.++-.+.+...           ....|++.++|.+- |+..+
T Consensus       167 ~~i~~~~~~~~~i~~~l~~i~~~e~~~~~~~~l~~i~~~s~Gd~R~ain~l  217 (239)
T d1njfa_         167 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLT  217 (239)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             cccccccCcHHHhhhHHHHHHhhhccCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            57889999999988877766           67889999999885 55444

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.16  E-value=0.0019  Score=45.39  Aligned_cols=37  Identities=19%  Similarity=0.334  Sum_probs=29.5

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALI  141 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~  141 (180)
                      ..+.++..+.++...++...           ....+++.++|.+-.+.
T Consensus       157 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~s~gd~R~ai  204 (238)
T d1in4a2         157 IILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAI  204 (238)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHH
T ss_pred             EEEEecCCCHHHHHHHHHHhhhhccchhhHHHHHHHHHhCCCCHHHHH
Confidence            45788999999988888776           68889999999865553

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.14  E-value=0.00091  Score=48.48  Aligned_cols=80  Identities=15%  Similarity=0.091  Sum_probs=54.1

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCCcChHHHHHHHHHHhC-CCc
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD--SWKNKNSEEKALEIFRFLS-KKK   77 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~~L~-~k~   77 (180)
                      .+|+|||+||.+++... ...  -..++|++....++.+.     ++.++.+...  -..+.+.++..+.+...++ ++.
T Consensus        68 ~~~~GKT~l~l~~~~~~-q~~--g~~~vyIDtE~~~~~e~-----a~~~GvD~d~il~~~~~~~E~~~~~~~~l~~~~~~  139 (269)
T d1mo6a1          68 PESSGKTTVALHAVANA-QAA--GGVAAFIDAEHALDPDY-----AKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGAL  139 (269)
T ss_dssp             SSSSSHHHHHHHHHHHH-HHT--TCEEEEEESSCCCCHHH-----HHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTTCE
T ss_pred             CCCcHHHHHHHHHHHHH-hcC--CCEEEEEECCccCCHHH-----HHHhCCCHHHeEEecCCCHHHHHHHHHHHHhcCCC
Confidence            37999999999988763 222  23578999888887664     4566665211  1234567777766665554 557


Q ss_pred             EEEEEeCCCCc
Q 046006           78 FVLLLDDKWER   88 (180)
Q Consensus        78 ~LlVlDdv~~~   88 (180)
                      -|+|+|.+-..
T Consensus       140 ~liIiDSi~al  150 (269)
T d1mo6a1         140 DIVVIDSVAAL  150 (269)
T ss_dssp             EEEEEECSTTC
T ss_pred             CEEEEeccccc
Confidence            89999998654

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.09  E-value=0.00019  Score=50.63  Aligned_cols=34  Identities=24%  Similarity=0.095  Sum_probs=27.9

Q ss_pred             ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChH
Q 046006          105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPL  138 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PL  138 (180)
                      ..+.+.+.+.++....+...           ..+.|++.|+|-.-
T Consensus       161 ~~i~~~~~~~~~~~~~l~~~~~~e~i~i~~~~l~~I~~~~~gdiR  205 (231)
T d1iqpa2         161 AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMR  205 (231)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHH
T ss_pred             ccccccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHH
Confidence            56888999999988888766           67899999988654

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.89  E-value=0.00035  Score=50.05  Aligned_cols=17  Identities=29%  Similarity=0.266  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||++|+.+++..
T Consensus        48 ppGtGKT~la~alA~~~   64 (246)
T d1d2na_          48 PPHSGKTALAAKIAEES   64 (246)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHhhcc
Confidence            58999999999999884

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.88  E-value=0.0021  Score=46.44  Aligned_cols=80  Identities=16%  Similarity=0.097  Sum_probs=55.5

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCCcChHHHHHHHHHHhC-CCc
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD--SWKNKNSEEKALEIFRFLS-KKK   77 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~~L~-~k~   77 (180)
                      .+|+|||+||.+++... ...+  ..++|++....++.+     +++.++.+...  -.++.+.++..+.+...++ +..
T Consensus        65 ~~~sGKT~l~l~~~~~a-qk~g--~~v~yiDtE~~~~~~-----~a~~~Gvd~d~i~~~~~~~~E~~~~~~~~l~~~~~~  136 (268)
T d1xp8a1          65 PESGGKTTLALAIVAQA-QKAG--GTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELLVRSGAI  136 (268)
T ss_dssp             STTSSHHHHHHHHHHHH-HHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCC
T ss_pred             CCccchHHHHHHHHHHH-HhCC--CEEEEEECCccCCHH-----HHHHhCCCchhEEEEcCCCHHHHHHHHHHHHhcCCC
Confidence            37999999999998874 2222  357899888888774     56777775211  1245567777777776665 457


Q ss_pred             EEEEEeCCCCc
Q 046006           78 FVLLLDDKWER   88 (180)
Q Consensus        78 ~LlVlDdv~~~   88 (180)
                      -|+|+|-+-..
T Consensus       137 ~liIiDSi~al  147 (268)
T d1xp8a1         137 DVVVVDSVAAL  147 (268)
T ss_dssp             SEEEEECTTTC
T ss_pred             cEEEEeccccc
Confidence            79999998654

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.0013  Score=45.32  Aligned_cols=72  Identities=15%  Similarity=0.195  Sum_probs=37.8

Q ss_pred             CCCCcHHHHHHHHHccccc--c-cCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh--CC
Q 046006            1 MGGVGKTTLLTHINNKFLV--S-STDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL--SK   75 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~--~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L--~~   75 (180)
                      .+|+|||+++..++.+...  + ...-+..+|.-     +...+       +...    ....+.++....+.+.+  ..
T Consensus        51 ~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~l-----d~~~L-------iAg~----~~rG~~E~rl~~il~e~~~~~  114 (195)
T d1jbka_          51 EPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL-----DMGAL-------VAGA----KYRGEFEERLKGVLNDLAKQE  114 (195)
T ss_dssp             CTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE-----CHHHH-------HTTT----CSHHHHHHHHHHHHHHHHHST
T ss_pred             cCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEe-----eHHHH-------hccC----CccHHHHHHHHHHHHHHhcCC
Confidence            3899999999988876421  1 11224455531     22222       1111    11123444444444443  34


Q ss_pred             CcEEEEEeCCCCc
Q 046006           76 KKFVLLLDDKWER   88 (180)
Q Consensus        76 k~~LlVlDdv~~~   88 (180)
                      .+.+|++||+...
T Consensus       115 ~~iILfIDeih~l  127 (195)
T d1jbka_         115 GNVILFIDELHTM  127 (195)
T ss_dssp             TTEEEEEETGGGG
T ss_pred             CcEEEEcchHHHH
Confidence            5899999998765

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.00025  Score=46.57  Aligned_cols=17  Identities=24%  Similarity=0.407  Sum_probs=15.7

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      |+|+||||+|+.++..+
T Consensus        10 ~~GsGKSTvak~La~~L   26 (169)
T d1kaga_          10 PMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CTTSCHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            68999999999999885

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.73  E-value=0.0003  Score=46.94  Aligned_cols=29  Identities=10%  Similarity=0.069  Sum_probs=21.7

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIV   31 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~   31 (180)
                      ++|+||||+|+.++..+..  .+++...++.
T Consensus        14 ~~GsGKTTia~~La~~L~~--~~~~~~~~~~   42 (183)
T d1m8pa3          14 YMNSGKDAIARALQVTLNQ--QGGRSVSLLL   42 (183)
T ss_dssp             STTSSHHHHHHHHHHHHHH--HCSSCEEEEE
T ss_pred             CCCCCHHHHHHHHHHHHhh--cCCCchhhhh
Confidence            6899999999999988632  3455566654

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.0024  Score=46.01  Aligned_cols=80  Identities=15%  Similarity=0.053  Sum_probs=52.1

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCCcChHHHHHHHHHHhC-CCc
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD--SWKNKNSEEKALEIFRFLS-KKK   77 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~~L~-~k~   77 (180)
                      .+|+||||||.+++.... .  .-..++|++....++..     .++.++.+...  -....+.++..+.+....+ ++.
T Consensus        62 ~~gsGKTtl~l~~~~~~q-~--~g~~~vyidtE~~~~~~-----~a~~~Gvd~d~v~~~~~~~~E~~~~~i~~l~~~~~~  133 (263)
T d1u94a1          62 PESSGKTTLTLQVIAAAQ-R--EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV  133 (263)
T ss_dssp             STTSSHHHHHHHHHHHHH-H--TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred             CCCcHHHHHHHHHHHHHH-c--CCCEEEEEccccccCHH-----HHHHhCCCHHHEEEecCCCHHHHHHHHHHHHhcCCC
Confidence            379999999999988842 2  22357888877777764     35666665111  1133456666666666554 455


Q ss_pred             EEEEEeCCCCc
Q 046006           78 FVLLLDDKWER   88 (180)
Q Consensus        78 ~LlVlDdv~~~   88 (180)
                      -|+|+|-+...
T Consensus       134 ~liViDSi~al  144 (263)
T d1u94a1         134 DVIVVDSVAAL  144 (263)
T ss_dssp             SEEEEECGGGC
T ss_pred             CEEEEECcccc
Confidence            69999998543

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.54  E-value=0.0018  Score=46.98  Aligned_cols=85  Identities=15%  Similarity=0.214  Sum_probs=51.6

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCCC---------CCCCcChHH------H
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDGD---------SWKNKNSEE------K   65 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~---------~~~~~~~~~------~   65 (180)
                      +|+|||+|+..+.++.  .+.+=+.++++-+++.. ...++.+++.+.--.....         .....+...      .
T Consensus        77 ~g~GKt~l~~~i~~~~--~~~~~~v~V~~~iGer~~ev~~~~~~~~~~~~~~~~~~~~~tvvv~~~s~~~~~~r~~~~~~  154 (276)
T d2jdid3          77 AGVGKTVLIMELINNV--AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALT  154 (276)
T ss_dssp             TTSSHHHHHHHHHHHH--TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH--HhhCCCeEEEEEeccChHHHHHHHHHHHhcCccccccccceEEEEEECCCCCHHHHHHHHHH
Confidence            6999999999998773  22445678888888764 5666777776642110000         011122222      1


Q ss_pred             HHHHHHHhC---CCcEEEEEeCCCCc
Q 046006           66 ALEIFRFLS---KKKFVLLLDDKWER   88 (180)
Q Consensus        66 ~~~l~~~L~---~k~~LlVlDdv~~~   88 (180)
                      .-.+.++++   ++.+|+++||+...
T Consensus       155 a~~iAEyf~~~~G~~VLv~~Dsltr~  180 (276)
T d2jdid3         155 GLTVAEYFRDQEGQDVLLFIDNIFRF  180 (276)
T ss_dssp             HHHHHHHHHHTTCSCEEEEEECTHHH
T ss_pred             HHHHHHHHHhcCCCeEEEEEcchhHH
Confidence            233555553   78999999998654

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.52  E-value=0.00037  Score=46.29  Aligned_cols=17  Identities=47%  Similarity=0.520  Sum_probs=15.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.++..+
T Consensus        12 ~pGsGKTTia~~La~~l   28 (173)
T d1rkba_          12 TPGVGKTTLGKELASKS   28 (173)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            58999999999998875

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.50  E-value=0.029  Score=42.40  Aligned_cols=107  Identities=15%  Similarity=0.124  Sum_probs=54.9

Q ss_pred             CCCCcHHHHHHHHHcccc--cc-cCCCCeEEE-EEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh-C-
Q 046006            1 MGGVGKTTLLTHINNKFL--VS-STDFDCVIW-IVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL-S-   74 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~--~~-~~~f~~~~w-v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~-   74 (180)
                      .+|+|||+|+..++.++.  .+ ..-.+.++| ++++.      +    +...       ......++....+...+ . 
T Consensus        51 ~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~------l----~ag~-------~~~g~~e~r~~~i~~~~~~~  113 (387)
T d1qvra2          51 EPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGS------L----LAGA-------KYRGEFEERLKAVIQEVVQS  113 (387)
T ss_dssp             CTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------------------------CHHHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhh------h----hccc-------CcchhHHHHHHHHHHHhccC
Confidence            489999998877665431  11 122345565 33331      1    1100       11234555555555544 3 


Q ss_pred             CCcEEEEEeCCCCccccc-------------c----c-------------cc---ccccccccceEeecCCChhhhHHHH
Q 046006           75 KKKFVLLLDDKWERVDLN-------------K----G-------------LF---VCGLVEANKNFKVECLSDNDAWELL  121 (180)
Q Consensus        75 ~k~~LlVlDdv~~~~~l~-------------~----g-------------~~---~~~~~~~~~~~~l~~L~~~~a~~Lf  121 (180)
                      ..+++|++|++...-...             +    |             ..   -.........+.+++.+.+++.+++
T Consensus       114 ~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT~~ey~~~e~d~al~rrF~~v~v~ep~~~~~~~il  193 (387)
T d1qvra2         114 QGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISIL  193 (387)
T ss_dssp             CSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHH
T ss_pred             CCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhCCCcceeeecCHHHHHHhcccHHHHHhcccccCCCCcHHHHHHHH
Confidence            347999999987652111             1    2             10   0111122368899999999999998


Q ss_pred             HHH
Q 046006          122 RQK  124 (180)
Q Consensus       122 ~~~  124 (180)
                      ...
T Consensus       194 ~~~  196 (387)
T d1qvra2         194 RGL  196 (387)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.44  E-value=0.00045  Score=46.24  Aligned_cols=17  Identities=24%  Similarity=0.409  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||||+.++..+
T Consensus        15 ~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2          15 GESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             CTTSHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            47999999999999875

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.0052  Score=42.71  Aligned_cols=83  Identities=16%  Similarity=0.189  Sum_probs=43.4

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC-CCcE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS-KKKF   78 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~-~k~~   78 (180)
                      +.|+||||.+.+++.++.  +.. ..+..++... .....+-++...+.++.+-.......+.........+..+ +..=
T Consensus        17 ptGvGKTTTiAKLA~~~~--~~g-~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~a~~~~~d   93 (211)
T d2qy9a2          17 VNGVGKTTTIGKLARQFE--QQG-KSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNID   93 (211)
T ss_dssp             CTTSCHHHHHHHHHHHHH--TTT-CCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHHHHHTTCS
T ss_pred             CCCCCHHHHHHHHHHHHH--HCC-CcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHHHHHcCCC
Confidence            479999998888887752  222 2233343332 2234566777888887651112233444444433333322 2223


Q ss_pred             EEEEeCCC
Q 046006           79 VLLLDDKW   86 (180)
Q Consensus        79 LlVlDdv~   86 (180)
                      ++++|=.-
T Consensus        94 ~ilIDTaG  101 (211)
T d2qy9a2          94 VLIADTAG  101 (211)
T ss_dssp             EEEECCCC
T ss_pred             EEEeccCC
Confidence            55666554

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.39  E-value=0.00055  Score=44.62  Aligned_cols=16  Identities=31%  Similarity=0.341  Sum_probs=14.1

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      ++|+||||||+.+..+
T Consensus        10 ~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_          10 CPGSGKSTWAREFIAK   25 (152)
T ss_dssp             CTTSSHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHh
Confidence            5899999999998765

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.32  E-value=0.00063  Score=44.96  Aligned_cols=17  Identities=29%  Similarity=0.501  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        10 ~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1          10 PAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             STTSSHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            58999999999998774

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.19  E-value=0.00074  Score=44.97  Aligned_cols=17  Identities=24%  Similarity=0.477  Sum_probs=15.8

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      |+|+||||+|+.++..+
T Consensus         9 ~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           9 LPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            68999999999999886

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.17  E-value=0.014  Score=40.62  Aligned_cols=81  Identities=14%  Similarity=0.053  Sum_probs=46.7

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC------------CCCCCCcChHHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLD------------GDSWKNKNSEEKALE   68 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~~~~~~~~~~~~~   68 (180)
                      .+|+|||+||.+++.+..   .....++|++...+  ...+.+. +..++.+.            ..........+....
T Consensus        34 ~pGsGKT~l~~qia~~~~---~~~~~~~~is~e~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (242)
T d1tf7a2          34 ATGTGKTLLVSRFVENAC---ANKERAILFAYEES--RAQLLRN-AYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQI  107 (242)
T ss_dssp             CTTSSHHHHHHHHHHHHH---TTTCCEEEEESSSC--HHHHHHH-HHTTSCCHHHHHHTTSEEECCCCGGGSCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH---HhccccceeeccCC--HHHHHHH-HHHcCCChHHHhhcCceEEEEeecchhhHHHHHHH
Confidence            489999999999998843   45566778775432  3333222 22222110            111123445566666


Q ss_pred             HHHHhC-CCcEEEEEeCCCC
Q 046006           69 IFRFLS-KKKFVLLLDDKWE   87 (180)
Q Consensus        69 l~~~L~-~k~~LlVlDdv~~   87 (180)
                      +...+. .+.-++|+|.+..
T Consensus       108 i~~~i~~~~~~~vviDs~~~  127 (242)
T d1tf7a2         108 IKSEINDFKPARIAIDSLSA  127 (242)
T ss_dssp             HHHHHHTTCCSEEEEECHHH
T ss_pred             HHHHHHhcCCceeeeecchh
Confidence            666553 4566888888643

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.14  E-value=0.0009  Score=44.42  Aligned_cols=17  Identities=29%  Similarity=0.491  Sum_probs=15.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.++..+
T Consensus        13 ~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_          13 TPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             STTSSHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999999875

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.00068  Score=45.94  Aligned_cols=17  Identities=29%  Similarity=0.540  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.++..+
T Consensus        27 ~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          27 LSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             SCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            58999999999998875

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=95.99  E-value=0.0011  Score=44.38  Aligned_cols=17  Identities=24%  Similarity=0.337  Sum_probs=15.7

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      |+|+||||+|+.++..+
T Consensus        10 ~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_          10 ARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            68999999999999886

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.99  E-value=0.0011  Score=44.06  Aligned_cols=17  Identities=29%  Similarity=0.493  Sum_probs=15.8

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      |+|+||||+|+.++.++
T Consensus         8 ~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           8 FMGSGKSTLARALAKDL   24 (161)
T ss_dssp             CTTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            78999999999999986

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.93  E-value=0.0016  Score=43.12  Aligned_cols=17  Identities=29%  Similarity=0.346  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        12 ~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1          12 HPGSGKSTIAEALANLP   28 (176)
T ss_dssp             CTTSCHHHHHHHHHTCS
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999998774

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.86  E-value=0.0016  Score=44.61  Aligned_cols=17  Identities=18%  Similarity=0.296  Sum_probs=15.2

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +||+||||+|++++..+
T Consensus        10 lpgsGKSTla~~L~~~l   26 (213)
T d1bifa1          10 LPARGKTYISKKLTRYL   26 (213)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            58999999999999775

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=95.85  E-value=0.0016  Score=42.86  Aligned_cols=17  Identities=41%  Similarity=0.593  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||||++++.+.+
T Consensus        10 ~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_          10 WSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             CTTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            47999999999999875

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0014  Score=43.61  Aligned_cols=17  Identities=41%  Similarity=0.573  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||||+++++..+
T Consensus         9 ~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           9 PPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCSSCHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHH
Confidence            48999999999998776

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=95.82  E-value=0.0015  Score=43.16  Aligned_cols=17  Identities=12%  Similarity=0.303  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+++.+
T Consensus        11 ~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_          11 GSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CTTSSHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            48999999999999885

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.74  E-value=0.0015  Score=43.12  Aligned_cols=17  Identities=18%  Similarity=0.579  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+...+
T Consensus        14 ~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_          14 VSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             STTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999998875

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=95.72  E-value=0.013  Score=40.64  Aligned_cols=82  Identities=18%  Similarity=0.259  Sum_probs=45.9

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHH--HhCCCc
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFR--FLSKKK   77 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~--~L~~k~   77 (180)
                      +.|+||||.+.+++.++. . +. ..+..++... .....+-++..++.++.+-.......+..........  ..++..
T Consensus        19 ptGvGKTTTiAKLAa~~~-~-~~-~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~~~~~~~d   95 (213)
T d1vmaa2          19 VNGTGKTTSCGKLAKMFV-D-EG-KSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALARNKD   95 (213)
T ss_dssp             CTTSSHHHHHHHHHHHHH-H-TT-CCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHHTTCS
T ss_pred             CCCCCHHHHHHHHHHHHH-H-CC-CceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHHHHHHHHcCCC
Confidence            479999998778877752 2 22 3466777654 3455667777788887651112223344443333222  223333


Q ss_pred             EEEEEeCCC
Q 046006           78 FVLLLDDKW   86 (180)
Q Consensus        78 ~LlVlDdv~   86 (180)
                       ++++|=.-
T Consensus        96 -~ilIDTaG  103 (213)
T d1vmaa2          96 -VVIIDTAG  103 (213)
T ss_dssp             -EEEEEECC
T ss_pred             -EEEEeccc
Confidence             66666654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=95.67  E-value=0.014  Score=40.38  Aligned_cols=83  Identities=16%  Similarity=0.206  Sum_probs=46.5

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHH--HhCCCc
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFR--FLSKKK   77 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~--~L~~k~   77 (180)
                      ++|+||||.+.+++..+.  +... .+..++... .....+.++...+.++.+-.......+..........  .+.+..
T Consensus        18 p~GvGKTTTiaKLA~~~~--~~g~-kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d   94 (207)
T d1ls1a2          18 LQGSGKTTTAAKLALYYK--GKGR-RPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARD   94 (207)
T ss_dssp             CTTTTHHHHHHHHHHHHH--HTTC-CEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred             CCCCCHHHHHHHHHHHHH--HCCC-cEEEEecccccchHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHhhccCc
Confidence            479999998888887753  2233 355666543 3356667778888887652222233455554433322  233444


Q ss_pred             EEEEEeCCCC
Q 046006           78 FVLLLDDKWE   87 (180)
Q Consensus        78 ~LlVlDdv~~   87 (180)
                       ++++|=...
T Consensus        95 -~vlIDTaGr  103 (207)
T d1ls1a2          95 -LILVDTAGR  103 (207)
T ss_dssp             -EEEEECCCC
T ss_pred             -ceeeccccc
Confidence             444465543

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.56  E-value=0.038  Score=38.02  Aligned_cols=49  Identities=18%  Similarity=0.256  Sum_probs=35.1

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLL   52 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~   52 (180)
                      +.|+||||.+.+++..+. . .. ..+..++... .....+-++..++.++.+
T Consensus        14 ptGvGKTTTiaKLA~~~~-~-~g-~kV~lit~Dt~R~gA~eQL~~~a~~l~i~   63 (207)
T d1okkd2          14 VNGVGKTTTIAKLGRYYQ-N-LG-KKVMFCAGDTFRAAGGTQLSEWGKRLSIP   63 (207)
T ss_dssp             STTSSHHHHHHHHHHHHH-T-TT-CCEEEECCCCSSTTHHHHHHHHHHHHTCC
T ss_pred             CCCCCHHHHHHHHHHHHH-H-CC-CcEEEEEeccccccchhhHhhcccccCce
Confidence            479999998888887753 2 22 3466777654 567777888888888765

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.46  E-value=0.0028  Score=42.54  Aligned_cols=16  Identities=25%  Similarity=0.385  Sum_probs=14.2

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      ++|+||||+|+.++..
T Consensus        22 ~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          22 FPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             CTTSSHHHHHHHHTGG
T ss_pred             CCCCCHHHHHHHHHHh
Confidence            5899999999999766

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=95.45  E-value=0.029  Score=40.38  Aligned_cols=84  Identities=10%  Similarity=0.117  Sum_probs=45.9

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC------C-CCCCCc--ChHHHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLD------G-DSWKNK--NSEEKALEIFR   71 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~-~~~~~~--~~~~~~~~l~~   71 (180)
                      +|+|||+|+........   .+-+.++++-++... ...++..++.+.=....      . ......  -.....-.+.+
T Consensus        76 ~g~GKt~l~~~~~~~~~---~~~~v~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~tsd~p~~~r~~a~~~a~tiAE  152 (276)
T d1fx0a3          76 RQTGKTAVATDTILNQQ---GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTGAALAE  152 (276)
T ss_dssp             SSSSHHHHHHHHHHTCC---TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHhhhc---ccCceeeeeeecchhHHHHHHHHhhccCCcceeeeecccccCccHHHHHHHHHHHHHHHH
Confidence            59999999988655522   344577788777654 33344444433210100      0 000000  11123344455


Q ss_pred             Hh--CCCcEEEEEeCCCCc
Q 046006           72 FL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        72 ~L--~~k~~LlVlDdv~~~   88 (180)
                      ++  ++++.|+++||+-..
T Consensus       153 yfrd~G~~Vlll~Dsltr~  171 (276)
T d1fx0a3         153 YFMYRERHTLIIYDDLSKQ  171 (276)
T ss_dssp             HHHHTTCEEEEEEECHHHH
T ss_pred             HHHHcCCceeEEeeccHHH
Confidence            55  488999999998654

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.44  E-value=0.0024  Score=45.38  Aligned_cols=17  Identities=35%  Similarity=0.395  Sum_probs=15.5

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +||+|||+||+.++..+
T Consensus        40 pPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          40 QPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             CTTSCTHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999999875

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.44  E-value=0.012  Score=43.54  Aligned_cols=17  Identities=29%  Similarity=0.538  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +||+|||.||+.++...
T Consensus       131 ~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         131 KGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             SSSSCHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHh
Confidence            58999999999999874

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.36  E-value=0.005  Score=44.32  Aligned_cols=29  Identities=24%  Similarity=0.383  Sum_probs=19.4

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVS   33 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~   33 (180)
                      ||+||||+|..++..+.+ ++  ..+.-|+..
T Consensus        17 GGVGKTTvaa~lA~~lA~-~G--~rVLlvD~D   45 (296)
T d1ihua1          17 GGVGKTSISCATAIRLAE-QG--KRVLLVSTD   45 (296)
T ss_dssp             TTSSHHHHHHHHHHHHHH-TT--CCEEEEECC
T ss_pred             CcChHHHHHHHHHHHHHH-CC--CCEEEEeCC
Confidence            899999998888877642 11  234555544

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.21  E-value=0.0034  Score=42.69  Aligned_cols=17  Identities=35%  Similarity=0.573  Sum_probs=15.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +||+||||+|+.++..+
T Consensus        14 ~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1          14 APGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CTTSSHHHHHHHHHHHB
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            68999999999999885

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.19  E-value=0.0031  Score=42.29  Aligned_cols=17  Identities=29%  Similarity=0.399  Sum_probs=15.5

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +||+||||+|+.++..+
T Consensus         8 ~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           8 PPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            58999999999999885

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.19  E-value=0.0031  Score=42.69  Aligned_cols=17  Identities=29%  Similarity=0.333  Sum_probs=15.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+++.+
T Consensus        11 ppGsGKsT~a~~La~~~   27 (189)
T d1zaka1          11 APASGKGTQCELIKTKY   27 (189)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            58999999999998885

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.18  E-value=0.0031  Score=42.16  Aligned_cols=17  Identities=29%  Similarity=0.452  Sum_probs=15.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +||+||||+|+.++..+
T Consensus         8 ~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           8 LPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            58999999999998875

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.15  E-value=0.055  Score=38.17  Aligned_cols=17  Identities=29%  Similarity=0.569  Sum_probs=14.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||+||.+++...
T Consensus        37 ~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          37 PGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            48999999999887653

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.12  E-value=0.0034  Score=41.76  Aligned_cols=17  Identities=29%  Similarity=0.347  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+++.+...+
T Consensus         9 ~~GsGKsT~~~~L~~~l   25 (190)
T d1khta_           9 VPGVGSTTSSQLAMDNL   25 (190)
T ss_dssp             CTTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            58999999999998875

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.05  E-value=0.0044  Score=41.08  Aligned_cols=17  Identities=47%  Similarity=0.688  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||||++.++..+
T Consensus         8 ~~G~GKSTLl~~i~~~l   24 (178)
T d1ye8a1           8 EPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHhcC
Confidence            47999999999999865

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.04  E-value=0.0043  Score=42.95  Aligned_cols=17  Identities=24%  Similarity=0.552  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||||+.+...+
T Consensus        32 lsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          32 LSASGKSTLAVELEHQL   48 (208)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            58999999999998764

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.03  E-value=0.0036  Score=42.43  Aligned_cols=17  Identities=35%  Similarity=0.393  Sum_probs=15.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +||+||||+|+.++..+
T Consensus        14 ~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_          14 GPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            58999999999999875

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.00  E-value=0.0044  Score=45.54  Aligned_cols=17  Identities=29%  Similarity=0.386  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||.||+.+++..
T Consensus        57 PpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          57 PTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHhhcc
Confidence            68999999999999874

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=94.99  E-value=0.0039  Score=41.64  Aligned_cols=18  Identities=33%  Similarity=0.600  Sum_probs=15.8

Q ss_pred             CCCCcHHHHHHHHHcccc
Q 046006            1 MGGVGKTTLLTHINNKFL   18 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~   18 (180)
                      ++|+||||+|+.+...+.
T Consensus         9 ~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           9 IPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             CTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            589999999999998863

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=94.94  E-value=0.004  Score=41.81  Aligned_cols=17  Identities=35%  Similarity=0.548  Sum_probs=15.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +||+||||+|+.++..+
T Consensus         8 ~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           8 LPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            58999999999999885

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.92  E-value=0.069  Score=37.50  Aligned_cols=17  Identities=41%  Similarity=0.368  Sum_probs=14.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +.|+|||||.+.+..-.
T Consensus        40 psGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          40 PSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             CTTSSHHHHHHHHHTSS
T ss_pred             CCCChHHHHHHHHHcCC
Confidence            47999999999987653

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.88  E-value=0.0046  Score=41.95  Aligned_cols=17  Identities=24%  Similarity=0.339  Sum_probs=15.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.++..+
T Consensus        16 ppGSGKsT~a~~La~~~   32 (196)
T d1ukza_          16 GPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             STTSSHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999998875

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.77  E-value=0.0058  Score=41.02  Aligned_cols=18  Identities=28%  Similarity=0.460  Sum_probs=15.4

Q ss_pred             CCCCcHHHHHHHHHcccc
Q 046006            1 MGGVGKTTLLTHINNKFL   18 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~   18 (180)
                      .+|+||||||+.+...+.
T Consensus        30 ~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          30 LSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             CTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhc
Confidence            379999999999988753

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.75  E-value=0.0049  Score=41.34  Aligned_cols=17  Identities=29%  Similarity=0.520  Sum_probs=15.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.++..+
T Consensus        10 ~pGSGKtT~a~~La~~~   26 (180)
T d1akya1          10 PPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999999875

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.52  E-value=0.0057  Score=42.17  Aligned_cols=17  Identities=29%  Similarity=0.429  Sum_probs=15.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.++.++
T Consensus        11 p~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_          11 PASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             SSCSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999999986

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=94.49  E-value=0.0061  Score=41.11  Aligned_cols=17  Identities=29%  Similarity=0.450  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +||+||||+|+.++..+
T Consensus        11 ~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1          11 PPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999999875

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.47  E-value=0.0061  Score=40.70  Aligned_cols=17  Identities=29%  Similarity=0.272  Sum_probs=15.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.++..+
T Consensus         8 ~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           8 APVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999999875

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=94.46  E-value=0.0062  Score=41.81  Aligned_cols=17  Identities=29%  Similarity=0.440  Sum_probs=15.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+||||+|+.+++++
T Consensus        11 ppGSGKgT~ak~La~~~   27 (225)
T d1ckea_          11 PSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            68999999999999986

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.0064  Score=41.08  Aligned_cols=17  Identities=35%  Similarity=0.430  Sum_probs=15.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +||+||||+|+.+++.+
T Consensus         9 ppGSGKsT~a~~La~~~   25 (194)
T d1teva_           9 GPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999999875

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.42  E-value=0.013  Score=40.45  Aligned_cols=29  Identities=24%  Similarity=0.260  Sum_probs=21.5

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVS   33 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~   33 (180)
                      ||+||||+|..++..+.   +.-..+..|...
T Consensus        11 GGvGKTtia~nlA~~la---~~g~~VlliD~D   39 (232)
T d1hyqa_          11 GGTGKTTITANLGVALA---QLGHDVTIVDAD   39 (232)
T ss_dssp             SCSCHHHHHHHHHHHHH---HTTCCEEEEECC
T ss_pred             CCChHHHHHHHHHHHHH---hCCCCEEEEeCC
Confidence            89999999999988864   222356777654

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.26  E-value=0.015  Score=40.16  Aligned_cols=29  Identities=24%  Similarity=0.265  Sum_probs=20.8

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVS   33 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~   33 (180)
                      ||+||||+|..++..+..  .. ..++-+...
T Consensus        12 GGvGKTtia~nLA~~la~--~g-~~VlliD~D   40 (237)
T d1g3qa_          12 GGTGKTTVTANLSVALGD--RG-RKVLAVDGD   40 (237)
T ss_dssp             TTSSHHHHHHHHHHHHHH--TT-CCEEEEECC
T ss_pred             CCCcHHHHHHHHHHHHHh--CC-CCEEEEeCC
Confidence            899999999999988642  22 346666643

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.25  E-value=0.013  Score=42.63  Aligned_cols=82  Identities=23%  Similarity=0.238  Sum_probs=41.4

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEE-eCCCCCHHHHHHHHHHHhCCCCCCCCCCcChH------HHHHHHHHHh-
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIV-VSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSE------EKALEIFRFL-   73 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~------~~~~~l~~~L-   73 (180)
                      +|+|||+|+..+.+..  ..++-++++.+. +++.....   .++.+.....-.......+..      ...-.+.+++ 
T Consensus        52 ~g~GKT~l~~~i~~~~--~~~~~~~v~~~~~iger~~ev---~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~iAEyfr  126 (289)
T d1xpua3          52 PKAGKTMLLQNIAQSI--AYNHPDCVLMVLLIDERPEEV---TEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLV  126 (289)
T ss_dssp             SSSSHHHHHHHHHHHH--HHHCTTSEEEEEEEEECHHHH---HHHHHHCSSEEEEEETTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH--hhcCCCeEEEEEeeceeHHHH---HhHHhhcceEEEeccCCCchhHHHHHHHHHHHHHHHHH
Confidence            6999999999998873  234445555443 34332221   222222210000011112211      1233344444 


Q ss_pred             -CCCcEEEEEeCCCCc
Q 046006           74 -SKKKFVLLLDDKWER   88 (180)
Q Consensus        74 -~~k~~LlVlDdv~~~   88 (180)
                       +++.+|+++||+-..
T Consensus       127 d~G~dVLli~Dsltr~  142 (289)
T d1xpua3         127 EHKKDVIILLDSITRL  142 (289)
T ss_dssp             TTTCEEEEEESCHHHH
T ss_pred             HhccCceeecCcHHHH
Confidence             478999999998643

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=94.12  E-value=0.083  Score=36.36  Aligned_cols=49  Identities=16%  Similarity=0.210  Sum_probs=27.7

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLL   52 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~   52 (180)
                      +.|+||||.+.+++.++. . ... .+..++... .....+-++..++.++.+
T Consensus        20 ptGvGKTTTiAKLA~~~~-~-~g~-kV~lit~Dt~R~ga~eQL~~~a~~l~v~   69 (211)
T d1j8yf2          20 VQGTGKATTAGKLAYFYK-K-KGF-KVGLVGADVYRPAALEQLQQLGQQIGVP   69 (211)
T ss_dssp             SCCC----HHHHHHHHHH-H-TTC-CEEEEECCCSSHHHHHHHHHHHHHHTCC
T ss_pred             CCCCCHHHHHHHHHHHHH-H-CCC-ceEEEEeeccccchhHHHHHhccccCcc
Confidence            479999998888777753 2 222 366666554 334555666777777765

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.08  E-value=0.012  Score=41.90  Aligned_cols=17  Identities=47%  Similarity=0.741  Sum_probs=14.3

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++..+.
T Consensus        29 GGVGKTT~a~nLA~~lA   45 (279)
T d1ihua2          29 GGVGKTTMAAAIAVRLA   45 (279)
T ss_dssp             TTSSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            89999999888877653

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.04  E-value=0.0088  Score=39.37  Aligned_cols=16  Identities=31%  Similarity=0.243  Sum_probs=14.6

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      +|+|||||+.++...+
T Consensus        10 ~gSGKTTli~~l~~~L   25 (165)
T d1xjca_          10 KHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             TTSSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            7999999999998875

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.95  E-value=0.042  Score=39.71  Aligned_cols=87  Identities=8%  Similarity=0.083  Sum_probs=44.1

Q ss_pred             CCCcHHHHHHHHHcccccccC----C-CCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChHH------HH
Q 046006            2 GGVGKTTLLTHINNKFLVSST----D-FDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSEE------KA   66 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~----~-f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~------~~   66 (180)
                      +|+|||+|+..+.........    . =..++++-+++.. ...++...+...-..+..   ......+...      ..
T Consensus        77 ~g~GKt~ll~~~~~~~~~~~~~~~~~~~~~~v~~~IGer~~E~~e~~~~~~~~~~~~~tvvv~~ts~~~~~~r~~~~~~a  156 (285)
T d2jdia3          77 RQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSG  156 (285)
T ss_dssp             TTSSHHHHHHHHHHHTHHHHTSSCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHhHHhhccccccccceEEEEeeeCccHHHHHHHHHHhcccccccceEEEEECCCCCHHHHHHHHHHH
Confidence            699999998887655221111    1 1235666677655 344555555433211100   0011111111      11


Q ss_pred             HHHHHHh--CCCcEEEEEeCCCCc
Q 046006           67 LEIFRFL--SKKKFVLLLDDKWER   88 (180)
Q Consensus        67 ~~l~~~L--~~k~~LlVlDdv~~~   88 (180)
                      -.+.+++  +++.+|+++||+-..
T Consensus       157 ~tiAEyfrd~G~~VLll~Dsltr~  180 (285)
T d2jdia3         157 CSMGEYFRDNGKHALIIYDDLSKQ  180 (285)
T ss_dssp             HHHHHHHHHTTCEEEEEEETHHHH
T ss_pred             HHHHHHHHHcCCcEEEEEcChHHH
Confidence            2233444  589999999998653

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.90  E-value=0.013  Score=43.10  Aligned_cols=17  Identities=35%  Similarity=0.503  Sum_probs=14.8

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||.||+.++..+
T Consensus        61 p~G~GKt~lak~la~~l   77 (315)
T d1qvra3          61 PTGVGKTELAKTLAATL   77 (315)
T ss_dssp             CSSSSHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHh
Confidence            47999999999998875

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.82  E-value=0.011  Score=39.95  Aligned_cols=17  Identities=35%  Similarity=0.391  Sum_probs=15.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +||+||||+|+.++..+
T Consensus        16 ~pGSGKsT~a~~La~~~   32 (194)
T d3adka_          16 GPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             CTTSSHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            58999999999998874

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=93.76  E-value=0.022  Score=40.47  Aligned_cols=17  Identities=29%  Similarity=0.626  Sum_probs=15.5

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      ||+||||+|..++..+.
T Consensus        10 GGvGKTT~a~nLA~~LA   26 (269)
T d1cp2a_          10 GGIGKSTTTQNLTSGLH   26 (269)
T ss_dssp             TTSSHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHH
Confidence            89999999999988874

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.72  E-value=0.012  Score=42.38  Aligned_cols=29  Identities=21%  Similarity=0.292  Sum_probs=20.0

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVS   33 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~   33 (180)
                      ||+||||+|..++..+..  ... .++-|...
T Consensus        11 GGVGKTT~a~NLA~~LA~--~G~-rVLlID~D   39 (289)
T d2afhe1          11 GGIGKSTTTQNLVAALAE--MGK-KVMIVGCD   39 (289)
T ss_dssp             TTSSHHHHHHHHHHHHHH--TTC-CEEEEEEC
T ss_pred             CCCCHHHHHHHHHHHHHH--CCC-CEEEEecC
Confidence            899999999998887642  222 35556544

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.29  E-value=0.057  Score=37.05  Aligned_cols=86  Identities=8%  Similarity=0.090  Sum_probs=43.8

Q ss_pred             CCCCcHHHHHHHHHcccccccC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---------CCCCCCcChHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSST----DFDCVIWIVVSKDLQLEKIQEIVGKKVGLLD---------GDSWKNKNSEEKAL   67 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~~~~~~~~~~~~   67 (180)
                      .+|+|||+||.+++... ....    .-...+|++.....+..... .....++...         ..............
T Consensus        42 ~pGsGKT~l~lq~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (251)
T d1szpa2          42 EFRTGKSQLCHTLAVTC-QIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNADHQLRLLD  119 (251)
T ss_dssp             STTSSHHHHHHHHTTTT-TSCTTTTCCSCEEEEEESSSCCCGGGGH-HHHHHTCCCHHHHGGGEEEEECCSTTTHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh-hhhhhhccCCceEEEEeecchHHHHHHH-HHHHhcCCchhhhhcceEEEeccchhHHHHHHH
Confidence            38999999999998763 1111    12457788766655533332 2222332210         00111122333333


Q ss_pred             HHHHHh-CCCcEEEEEeCCCCc
Q 046006           68 EIFRFL-SKKKFVLLLDDKWER   88 (180)
Q Consensus        68 ~l~~~L-~~k~~LlVlDdv~~~   88 (180)
                      .+.... .....++++|++...
T Consensus       120 ~~~~~~~~~~~~~~~~ds~~~~  141 (251)
T d1szpa2         120 AAAQMMSESRFSLIVVDSVMAL  141 (251)
T ss_dssp             HTHHHHHHSCEEEEEEETGGGG
T ss_pred             HHHHHhhccccceeeehhhhhh
Confidence            333333 356778888887544

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=93.22  E-value=0.12  Score=37.69  Aligned_cols=71  Identities=11%  Similarity=-0.069  Sum_probs=37.7

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKK   76 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k   76 (180)
                      +|+||||+|+.+...+....... .+.-++...-+-....+..  +.+... ...+..-|.+.+.+.+.....++
T Consensus        89 sgSGKSTla~~L~~lL~~~~~~~-~v~~Is~D~F~~~~~~l~~--~~~~~~-~g~Pes~D~~~L~~~L~~lk~g~  159 (308)
T d1sq5a_          89 VAVGKSTTARVLQALLSRWPEHR-RVELITTDGFLHPNQVLKE--RGLMKK-KGFPESYDMHRLVKFVSDLKSGV  159 (308)
T ss_dssp             TTSSHHHHHHHHHHHHTTSTTCC-CEEEEEGGGGBCCHHHHHH--HTCTTC-TTSGGGBCHHHHHHHHHHHTTTC
T ss_pred             CCCCCcHHHHHHHHHHhhhcCCC-ceEEEeeeeeECCchHHHH--hcCCcc-CCchHhhhHHHHHHHHHHHHcCC
Confidence            69999999999987753111122 2444554433322222211  111111 22234567777877777776654

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.21  E-value=0.016  Score=39.72  Aligned_cols=16  Identities=19%  Similarity=0.316  Sum_probs=14.4

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      +|+||||+|+.+...+
T Consensus        11 ~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_          11 TASGKSSVCAKIVQLL   26 (213)
T ss_dssp             TTSSHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            6999999999998875

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.18  E-value=0.082  Score=38.15  Aligned_cols=74  Identities=8%  Similarity=-0.021  Sum_probs=38.8

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC----CCCCCCcChHHHHHHHHHHhCC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLD----GDSWKNKNSEEKALEIFRFLSK   75 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~   75 (180)
                      .|+||||||..+...+.........+.-+++..-+-..+-...+.+.....+    ...+..-|.+.+.+.+....++
T Consensus        36 qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY~t~~~r~~L~~~~~~~pl~~~RG~PgThD~~ll~~~l~~l~~~  113 (286)
T d1odfa_          36 QGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNN  113 (286)
T ss_dssp             TTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHHHHHHHTC-
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCCCCHHHHHHHhhhccccccceecCCCcchhHHHHHHHHHHHHhh
Confidence            6999999999887764211111124556666554433333444544432110    1223445676666666666544

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.15  E-value=0.032  Score=38.27  Aligned_cols=17  Identities=18%  Similarity=0.284  Sum_probs=15.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +.|+||||+++.+.+.+
T Consensus        11 ~dGsGKsT~~~~L~~~L   27 (209)
T d1nn5a_          11 VDRAGKSTQSRKLVEAL   27 (209)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            46999999999998886

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.05  E-value=0.017  Score=38.81  Aligned_cols=18  Identities=33%  Similarity=0.565  Sum_probs=15.5

Q ss_pred             CCCCcHHHHHHHHHcccc
Q 046006            1 MGGVGKTTLLTHINNKFL   18 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~   18 (180)
                      ++|+|||||++.++.++.
T Consensus         9 psG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           9 PSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCHHHHHHHHHHhCC
Confidence            579999999999988753

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.01  E-value=0.09  Score=36.30  Aligned_cols=41  Identities=27%  Similarity=0.326  Sum_probs=26.1

Q ss_pred             CCCCcHHHHHHHHHccccc---ccCCCCeEEEEEeCCCCCHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLV---SSTDFDCVIWIVVSKDLQLEKI   41 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~   41 (180)
                      .+|+|||++|.+++.+...   ........+|+......+...+
T Consensus        44 ~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (254)
T d1pzna2          44 EFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI   87 (254)
T ss_dssp             STTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH
T ss_pred             CCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccchhHHHHH
Confidence            4899999999999876311   0112345677776666655443

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.63  E-value=0.11  Score=35.16  Aligned_cols=17  Identities=0%  Similarity=-0.244  Sum_probs=14.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||++|..+.+..
T Consensus        23 ~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          23 EDLSYPREVSLELPEYV   39 (198)
T ss_dssp             SSSSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            37999999999988764

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=92.58  E-value=0.023  Score=37.47  Aligned_cols=15  Identities=40%  Similarity=0.505  Sum_probs=13.9

Q ss_pred             CCcHHHHHHHHHccc
Q 046006            3 GVGKTTLLTHINNKF   17 (180)
Q Consensus         3 GiGKTtLA~~~~~~~   17 (180)
                      |+||||+++.+++.+
T Consensus        43 GaGKTtfvr~~~~~l   57 (158)
T d1htwa_          43 GAGKTTLTRGMLQGI   57 (158)
T ss_dssp             TSSHHHHHHHHHHHT
T ss_pred             CccHHHHHHHHHhhc
Confidence            899999999999876

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.56  E-value=0.017  Score=38.89  Aligned_cols=16  Identities=44%  Similarity=0.495  Sum_probs=14.1

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      -|+||||+++.+...+
T Consensus        18 ~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1          18 IGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             TTSCHHHHHHTTGGGT
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            5999999999998775

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.50  E-value=0.022  Score=38.27  Aligned_cols=17  Identities=18%  Similarity=0.088  Sum_probs=14.5

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||+||.+++.+.
T Consensus        31 ~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          31 EFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             CTTSSHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            48999999999998663

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.50  E-value=0.023  Score=38.39  Aligned_cols=17  Identities=35%  Similarity=0.563  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||||++.++..+
T Consensus         8 PsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           8 PSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             CTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhC
Confidence            57999999999998764

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.83  E-value=0.03  Score=37.30  Aligned_cols=17  Identities=24%  Similarity=0.501  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||||++.+..++
T Consensus        10 psG~GK~tl~~~L~~~~   26 (182)
T d1znwa1          10 PSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             STTSSHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHhhC
Confidence            47999999999998774

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=91.68  E-value=0.099  Score=35.41  Aligned_cols=28  Identities=18%  Similarity=0.286  Sum_probs=19.2

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWI   30 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv   30 (180)
                      +.|+||||+++.+...+.  ...+..+.+.
T Consensus        10 ~dGsGKsT~~~~L~~~L~--~~g~~~~~~~   37 (210)
T d4tmka_          10 LEGAGKTTARNVVVETLE--QLGIRDMVFT   37 (210)
T ss_dssp             CTTSCHHHHHHHHHHHHH--HTTCCCEEEE
T ss_pred             CCCCCHHHHHHHHHHHHH--hCCCCeEEEe
Confidence            469999999999988753  1334444444

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.66  E-value=0.054  Score=36.92  Aligned_cols=17  Identities=47%  Similarity=0.698  Sum_probs=14.7

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +.|+|||||.+.++.-.
T Consensus        35 ~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          35 PNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CTTSSHHHHHHHHTTSS
T ss_pred             CCCChHHHHHHHHhccc
Confidence            36999999999998764

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.64  E-value=0.059  Score=37.89  Aligned_cols=27  Identities=19%  Similarity=0.167  Sum_probs=19.5

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIV   31 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~   31 (180)
                      +.|+|||||.+.++.-.    ..-.+.++++
T Consensus        32 pnGaGKSTll~~i~Gl~----~p~~G~I~~~   58 (240)
T d2onka1          32 PTGAGKSVFLELIAGIV----KPDRGEVRLN   58 (240)
T ss_dssp             CTTSSHHHHHHHHHTSS----CCSEEEEEET
T ss_pred             CCCChHHHHHHHHHcCC----CCCceEEEEC
Confidence            46999999999998764    2335556553

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.47  E-value=0.031  Score=38.77  Aligned_cols=16  Identities=25%  Similarity=0.511  Sum_probs=14.4

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      -|+||||+++.+...+
T Consensus        11 ~GsGKST~~~~L~~~l   26 (241)
T d2ocpa1          11 IAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             TTSSHHHHHHHHHHHC
T ss_pred             CCCcHHHHHHHHHHHH
Confidence            5999999999999875

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.29  E-value=0.29  Score=33.45  Aligned_cols=41  Identities=15%  Similarity=0.122  Sum_probs=26.4

Q ss_pred             CCCCcHHHHHHHHHccccc---ccCCCCeEEEEEeCCCCCHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLV---SSTDFDCVIWIVVSKDLQLEKI   41 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~   41 (180)
                      .+|+|||++|.+++.....   ....+..+.|+...........
T Consensus        45 ~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (258)
T d1v5wa_          45 EFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRL   88 (258)
T ss_dssp             CTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHHHHHH
Confidence            4799999999999865211   1233456777776666554433

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.24  E-value=0.039  Score=36.87  Aligned_cols=17  Identities=24%  Similarity=0.417  Sum_probs=14.7

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||||++.+..+.
T Consensus        11 psg~GK~tl~~~L~~~~   27 (178)
T d1kgda_          11 AHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CTTSSHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHhC
Confidence            57999999999998664

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=91.01  E-value=0.042  Score=35.14  Aligned_cols=16  Identities=31%  Similarity=0.486  Sum_probs=13.8

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      .+|+|||||...+..+
T Consensus         8 ~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           8 LDAAGKTTILYKLKLG   23 (160)
T ss_dssp             STTSSHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHhcC
Confidence            4799999999998765

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.91  E-value=0.085  Score=36.79  Aligned_cols=27  Identities=26%  Similarity=0.283  Sum_probs=18.4

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIV   31 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~   31 (180)
                      .+|+|||||.+.++.-.    ..-.+.+++.
T Consensus        39 ~sGsGKSTLl~~i~gl~----~p~sG~I~~~   65 (230)
T d1l2ta_          39 PSGSGKSTMLNIIGCLD----KPTEGEVYID   65 (230)
T ss_dssp             STTSSHHHHHHHHTTSS----CCSEEEEEET
T ss_pred             CCCCCcchhhHhccCCC----CCCcceeEEC
Confidence            47999999999887653    2334555553

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.77  E-value=0.041  Score=37.18  Aligned_cols=17  Identities=35%  Similarity=0.735  Sum_probs=14.8

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +-|+||||+++.+...+
T Consensus         8 ~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           8 VDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            35999999999998875

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.39  E-value=0.08  Score=37.41  Aligned_cols=17  Identities=29%  Similarity=0.530  Sum_probs=14.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||++.+..-+
T Consensus        48 ~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          48 PNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             STTSSHHHHHHHHTTSS
T ss_pred             CCCCcHHHHHHHHhccc
Confidence            36999999999997654

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=90.26  E-value=0.058  Score=35.98  Aligned_cols=14  Identities=29%  Similarity=0.361  Sum_probs=12.0

Q ss_pred             CCCCcHHHHHHHHH
Q 046006            1 MGGVGKTTLLTHIN   14 (180)
Q Consensus         1 mgGiGKTtLA~~~~   14 (180)
                      ++|+||||+|..+-
T Consensus        11 ~~gSGKstva~~l~   24 (191)
T d1uf9a_          11 NIGSGKSTVAALLR   24 (191)
T ss_dssp             CTTSCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHH
Confidence            47999999999874

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=90.13  E-value=0.063  Score=34.47  Aligned_cols=15  Identities=40%  Similarity=0.607  Sum_probs=13.6

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.++
T Consensus        14 ~~vGKSSLi~~~~~~   28 (169)
T d1upta_          14 DGAGKTTILYRLQVG   28 (169)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHhCC
Confidence            799999999999877

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=90.13  E-value=0.12  Score=36.24  Aligned_cols=17  Identities=41%  Similarity=0.368  Sum_probs=14.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||++.++.-.
T Consensus        37 ~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          37 PSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             STTSSHHHHHHHHHTSS
T ss_pred             CCCChHHHHHHHHhcCC
Confidence            47999999999997653

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.00  E-value=0.035  Score=38.32  Aligned_cols=17  Identities=18%  Similarity=0.221  Sum_probs=14.8

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +-|+||||+|+.+...+
T Consensus        10 ~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_          10 NIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             STTSSHHHHHTTTGGGC
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            35999999999998875

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.97  E-value=0.066  Score=34.84  Aligned_cols=15  Identities=47%  Similarity=0.707  Sum_probs=13.1

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|...+.++
T Consensus        13 ~~vGKTsli~~~~~~   27 (166)
T d1z0fa1          13 MGVGKSCLLHQFTEK   27 (166)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHhC
Confidence            699999999998764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.92  E-value=0.067  Score=34.81  Aligned_cols=15  Identities=40%  Similarity=0.680  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|...+.++
T Consensus        12 ~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_          12 GGVGKSALTVQFVTG   26 (167)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHhC
Confidence            699999999998765

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.92  E-value=0.071  Score=34.49  Aligned_cols=16  Identities=31%  Similarity=0.256  Sum_probs=13.8

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      .+|+|||+|...+.+.
T Consensus        10 ~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1          10 DSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             CTTSSHHHHHHHHHHS
T ss_pred             CCCcCHHHHHHHHHhC
Confidence            3799999999999865

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.89  E-value=0.07  Score=34.80  Aligned_cols=15  Identities=40%  Similarity=0.733  Sum_probs=13.2

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.++
T Consensus        11 ~~vGKTsLi~r~~~~   25 (171)
T d2erxa1          11 GGVGKSSLVLRFVKG   25 (171)
T ss_dssp             TTSSHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHhC
Confidence            699999999988765

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.88  E-value=0.12  Score=36.57  Aligned_cols=17  Identities=29%  Similarity=0.509  Sum_probs=14.1

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||||++.+..-+
T Consensus        49 ~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          49 RSGSGKSTIASLITRFY   65 (253)
T ss_dssp             CTTSSHHHHHHHHTTTT
T ss_pred             CCCChHHHHHHHHhccc
Confidence            47999999999997653

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=89.85  E-value=0.16  Score=35.56  Aligned_cols=16  Identities=38%  Similarity=0.574  Sum_probs=14.1

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      +|+|||||++.+..-+
T Consensus        38 sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          38 SGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             TTSSHHHHHHHHTTSS
T ss_pred             CCCCHHHHHHHHHhcC
Confidence            6999999999998764

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=89.84  E-value=0.059  Score=36.75  Aligned_cols=31  Identities=13%  Similarity=0.092  Sum_probs=18.7

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeC
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVS   33 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~   33 (180)
                      .+|+|||+||.+++.... . ..-..++|++..
T Consensus        34 ~~G~GKT~la~~~~~~~~-~-~~~~~~~~~s~e   64 (242)
T d1tf7a1          34 TSGTGKTLFSIQFLYNGI-I-EFDEPGVFVTFE   64 (242)
T ss_dssp             STTSSHHHHHHHHHHHHH-H-HHCCCEEEEESS
T ss_pred             CCCCCHHHHHHHHHHHHH-H-hcCCCccccccc
Confidence            379999999988655421 1 222235666544

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.83  E-value=0.18  Score=34.42  Aligned_cols=17  Identities=29%  Similarity=0.380  Sum_probs=14.8

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +-|+||||+++.+...+
T Consensus        11 ~DGsGKST~~~~L~~~L   27 (214)
T d1tmka_          11 LDRTGKTTQCNILYKKL   27 (214)
T ss_dssp             STTSSHHHHHHHHHHHT
T ss_pred             CCCCcHHHHHHHHHHHH
Confidence            35999999999998886

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=89.79  E-value=0.11  Score=38.22  Aligned_cols=17  Identities=24%  Similarity=0.196  Sum_probs=14.9

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      =|+||||+++.+.+.+.
T Consensus        15 iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_          15 YGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             TTSSHHHHHHHHHSGGG
T ss_pred             ccCCHHHHHHHHHHHhc
Confidence            49999999999999863

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.77  E-value=0.12  Score=36.09  Aligned_cols=16  Identities=44%  Similarity=0.561  Sum_probs=13.5

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      +.|+|||||.+.++.-
T Consensus        34 psGsGKSTLl~~i~Gl   49 (232)
T d2awna2          34 PSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             CTTSSHHHHHHHHHTS
T ss_pred             CCCChHHHHHHHHhcC
Confidence            4799999999998654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.76  E-value=0.07  Score=35.00  Aligned_cols=15  Identities=47%  Similarity=0.767  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|+..+.++
T Consensus        12 ~~vGKTsli~r~~~~   26 (173)
T d2a5ja1          12 TGVGKSCLLLQFTDK   26 (173)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHhcC
Confidence            799999999998766

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=89.75  E-value=0.065  Score=39.15  Aligned_cols=17  Identities=29%  Similarity=0.520  Sum_probs=15.0

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||.||+.++.-+
T Consensus        60 p~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          60 PTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHhhc
Confidence            47999999999998874

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.65  E-value=0.072  Score=34.56  Aligned_cols=15  Identities=27%  Similarity=0.594  Sum_probs=13.1

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        11 ~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1          11 GAVGKSSMIQRYCKG   25 (164)
T ss_dssp             TTSSHHHHHHHHHHC
T ss_pred             CCcCHHHHHHHHHhC
Confidence            799999999988754

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.60  E-value=0.075  Score=35.21  Aligned_cols=15  Identities=47%  Similarity=0.727  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||+..+.+.
T Consensus        14 ~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1          14 SGVGKTTFLYRYTDN   28 (186)
T ss_dssp             TTSSHHHHHHHHHCS
T ss_pred             CCcCHHHHHHHHhcC
Confidence            699999999998865

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=89.59  E-value=0.067  Score=39.94  Aligned_cols=17  Identities=29%  Similarity=0.147  Sum_probs=15.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +||+|||++|..+++.+
T Consensus       162 ~~~~gk~~~~~~~~~~~  178 (362)
T d1svma_         162 PIDSGKTTLAAALLELC  178 (362)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            58999999999999985

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.54  E-value=0.074  Score=34.61  Aligned_cols=15  Identities=40%  Similarity=0.581  Sum_probs=13.1

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|...+.+.
T Consensus        12 ~~vGKTsLi~r~~~~   26 (167)
T d1z08a1          12 GCVGKTSLVLRYCEN   26 (167)
T ss_dssp             TTSCHHHHHHHHHHC
T ss_pred             CCcCHHHHHHHHHhC
Confidence            699999999998754

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=89.54  E-value=0.063  Score=36.95  Aligned_cols=17  Identities=35%  Similarity=0.470  Sum_probs=14.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +.|+|||||..++.++.
T Consensus         8 ~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           8 TAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHH
Confidence            47999999999998653

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=89.50  E-value=0.071  Score=36.55  Aligned_cols=17  Identities=24%  Similarity=0.350  Sum_probs=14.5

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .+|+|||++|.+++.+.
T Consensus        42 ~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          42 VFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             STTSSHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            37999999999998653

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=89.47  E-value=0.07  Score=36.03  Aligned_cols=17  Identities=24%  Similarity=0.098  Sum_probs=14.6

Q ss_pred             CCCcHHHHHHHHHcccc
Q 046006            2 GGVGKTTLLTHINNKFL   18 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~   18 (180)
                      +|+||||++..++..+.
T Consensus        11 ~GVGKTtvs~~La~aLa   27 (224)
T d1byia_          11 TEVGKTVASCALLQAAK   27 (224)
T ss_dssp             TTSCHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHH
Confidence            49999999999988863

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.37  E-value=0.14  Score=36.34  Aligned_cols=26  Identities=31%  Similarity=0.313  Sum_probs=18.6

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEE
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWI   30 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv   30 (180)
                      +.|+|||||++.+..-.    ....+.+++
T Consensus        36 ~sGsGKSTLl~~i~Gl~----~p~~G~I~~   61 (258)
T d1b0ua_          36 SSGSGKSTFLRCINFLE----KPSEGAIIV   61 (258)
T ss_dssp             CTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred             CCCCcHHHHHHHHHcCc----cCCCCCEEE
Confidence            46999999999997653    333555554

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.33  E-value=0.079  Score=34.27  Aligned_cols=15  Identities=40%  Similarity=0.543  Sum_probs=13.2

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|.+.+.++
T Consensus         9 ~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           9 QSVGKTSLITRFMYD   23 (164)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHhC
Confidence            699999999998764

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=89.30  E-value=0.099  Score=36.92  Aligned_cols=43  Identities=16%  Similarity=0.132  Sum_probs=25.8

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKK   48 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~   48 (180)
                      +|+|||+++.+++.+.. ....+ .+++++..  .+..++...++..
T Consensus        44 ~G~GKT~~~~~la~~~a-~~~g~-~v~~~s~E--~~~~~~~~r~~~~   86 (277)
T d1cr2a_          44 SGMGKSTFVRQQALQWG-TAMGK-KVGLAMLE--ESVEETAEDLIGL   86 (277)
T ss_dssp             TTSSHHHHHHHHHHHHH-HTSCC-CEEEEESS--SCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhhh-hhccc-ceeEeeec--cchhhHHhHHHHH
Confidence            79999999999987642 22333 34455433  4455555555443

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=89.29  E-value=0.074  Score=39.71  Aligned_cols=19  Identities=11%  Similarity=0.142  Sum_probs=15.3

Q ss_pred             ceEeecCCChhhhHHHHHH
Q 046006          105 KNFKVECLSDNDAWELLRQ  123 (180)
Q Consensus       105 ~~~~l~~L~~~~a~~Lf~~  123 (180)
                      .++.+++|+.++-.+++..
T Consensus       262 ~iv~f~~L~~~~l~~Il~~  280 (364)
T d1um8a_         262 VLSTLDSISLEAMVDILQK  280 (364)
T ss_dssp             EEEECCCCCHHHHHHHHHS
T ss_pred             chhhHhhhhHHHHHHHHHH
Confidence            4578999999999888763

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.15  E-value=0.082  Score=34.47  Aligned_cols=15  Identities=33%  Similarity=0.536  Sum_probs=13.1

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        14 ~~vGKTsLi~~l~~~   28 (169)
T d3raba_          14 SSVGKTSFLFRYADD   28 (169)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHcC
Confidence            699999999988754

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=89.03  E-value=0.078  Score=40.67  Aligned_cols=17  Identities=29%  Similarity=0.386  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||.||+.++.-+
T Consensus        57 PTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          57 PTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             CTTSSHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            57999999999998754

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.98  E-value=0.086  Score=34.41  Aligned_cols=15  Identities=40%  Similarity=0.658  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|.+.+.+.
T Consensus        14 ~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1          14 AGVGKTCLVRRFTQG   28 (171)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHhC
Confidence            799999999998865

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.94  E-value=0.087  Score=34.35  Aligned_cols=15  Identities=27%  Similarity=0.461  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|...+.+.
T Consensus        15 ~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_          15 SAVGKSSLVLRFVKG   29 (170)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHhC
Confidence            699999999998855

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.88  E-value=0.088  Score=34.31  Aligned_cols=15  Identities=40%  Similarity=0.678  Sum_probs=13.6

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|...++++
T Consensus        11 ~~vGKTsli~r~~~~   25 (168)
T d2atva1          11 AGVGKSALVVRFLTK   25 (168)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHhC
Confidence            699999999999876

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.86  E-value=0.089  Score=34.19  Aligned_cols=15  Identities=27%  Similarity=0.547  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.++
T Consensus        13 ~~vGKTsli~rl~~~   27 (167)
T d1z0ja1          13 TGVGKSSIMWRFVED   27 (167)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHhC
Confidence            699999999998865

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.75  E-value=0.091  Score=34.06  Aligned_cols=15  Identities=40%  Similarity=0.667  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+++.
T Consensus        11 ~~vGKTSli~~l~~~   25 (166)
T d1g16a_          11 SGVGKSCLLVRFVED   25 (166)
T ss_dssp             TTSSHHHHHHHHHHC
T ss_pred             CCcCHHHHHHHHHhC
Confidence            699999999998765

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.75  E-value=0.091  Score=34.36  Aligned_cols=15  Identities=40%  Similarity=0.647  Sum_probs=12.9

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|+..+...
T Consensus        14 ~~vGKTsll~~~~~~   28 (174)
T d2bmea1          14 AGTGKSCLLHQFIEK   28 (174)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHhC
Confidence            799999999998754

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=88.70  E-value=0.084  Score=37.09  Aligned_cols=16  Identities=38%  Similarity=0.569  Sum_probs=13.8

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      .+|+|||||++.++--
T Consensus        39 ~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          39 ASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             STTSSHHHHHHHHTTS
T ss_pred             CCCCCHHHHHHHHcCC
Confidence            4799999999998765

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.66  E-value=0.093  Score=34.38  Aligned_cols=15  Identities=40%  Similarity=0.685  Sum_probs=13.2

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|...+.+.
T Consensus        15 ~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1          15 GGVGKSALTIQFIQS   29 (173)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHhC
Confidence            699999999998765

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=88.64  E-value=0.083  Score=36.06  Aligned_cols=17  Identities=24%  Similarity=0.425  Sum_probs=14.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ++|+|||||.+.+....
T Consensus        10 PSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_          10 PSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CTTSCHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHhhC
Confidence            58999999999998764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.62  E-value=0.098  Score=34.07  Aligned_cols=15  Identities=33%  Similarity=0.463  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|.+.+.+.
T Consensus        10 ~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1          10 PGVGKSALARIFGGV   24 (168)
T ss_dssp             TTSSHHHHHHHHHTC
T ss_pred             CCcCHHHHHHHHhCC
Confidence            699999999998765

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=88.61  E-value=0.05  Score=39.84  Aligned_cols=15  Identities=27%  Similarity=0.406  Sum_probs=12.9

Q ss_pred             CCCCcHHHHHHHHHc
Q 046006            1 MGGVGKTTLLTHINN   15 (180)
Q Consensus         1 mgGiGKTtLA~~~~~   15 (180)
                      .+|+|||+||+.+..
T Consensus        36 ~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          36 DRGTGKSTAVRALAA   50 (333)
T ss_dssp             CGGGCTTHHHHHHHH
T ss_pred             CCCccHHHHHHHHHH
Confidence            379999999999864

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=88.47  E-value=0.097  Score=33.80  Aligned_cols=16  Identities=38%  Similarity=0.669  Sum_probs=13.9

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      .+|+|||||...+.+.
T Consensus        10 ~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_          10 LDNAGKTTILKKFNGE   25 (165)
T ss_dssp             STTSSHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHcCC
Confidence            3799999999998775

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.43  E-value=0.099  Score=33.92  Aligned_cols=15  Identities=40%  Similarity=0.740  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|...+.++
T Consensus        12 ~~vGKTsli~~l~~~   26 (166)
T d1ctqa_          12 GGVGKSALTIQLIQN   26 (166)
T ss_dssp             TTSSHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHhC
Confidence            699999999998865

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.19  E-value=0.1  Score=33.83  Aligned_cols=15  Identities=40%  Similarity=0.685  Sum_probs=13.2

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|...+.+.
T Consensus        12 ~~vGKTsli~r~~~~   26 (167)
T d1c1ya_          12 GGVGKSALTVQFVQG   26 (167)
T ss_dssp             TTSSHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHcC
Confidence            699999999998765

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.12  E-value=0.11  Score=33.97  Aligned_cols=15  Identities=47%  Similarity=0.727  Sum_probs=13.1

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.++
T Consensus        11 ~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_          11 SGVGKTSLMHRYVND   25 (175)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHcC
Confidence            799999999998754

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=88.09  E-value=0.11  Score=33.77  Aligned_cols=15  Identities=33%  Similarity=0.490  Sum_probs=13.2

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||..++...
T Consensus        24 ~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          24 DNAGKTTILYQFSMN   38 (177)
T ss_dssp             TTSSHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHhcC
Confidence            799999999998765

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=87.93  E-value=0.12  Score=34.46  Aligned_cols=16  Identities=31%  Similarity=0.480  Sum_probs=13.8

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      .+|+||||||..+..+
T Consensus        23 ~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          23 RSGIGKSECALDLINK   38 (177)
T ss_dssp             SSSSSHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHc
Confidence            3799999999998766

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.91  E-value=0.11  Score=33.64  Aligned_cols=15  Identities=27%  Similarity=0.390  Sum_probs=13.1

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|...+.+.
T Consensus        13 ~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1          13 RSVGKSSLTIQFVEG   27 (167)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHhC
Confidence            699999999998765

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.88  E-value=0.11  Score=33.82  Aligned_cols=15  Identities=40%  Similarity=0.685  Sum_probs=13.1

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|...+.++
T Consensus        14 ~~vGKTsLi~r~~~~   28 (171)
T d2erya1          14 GGVGKSALTIQFIQS   28 (171)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHhC
Confidence            799999999988765

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=87.87  E-value=0.11  Score=34.61  Aligned_cols=15  Identities=27%  Similarity=0.494  Sum_probs=13.5

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+||||+|..+..+
T Consensus        23 sG~GKStlal~l~~~   37 (176)
T d1kkma_          23 SGVGKSETALELVQR   37 (176)
T ss_dssp             TTSCHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHc
Confidence            799999999998776

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.86  E-value=0.11  Score=34.03  Aligned_cols=15  Identities=40%  Similarity=0.527  Sum_probs=13.2

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|...+.+.
T Consensus        11 ~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_          11 GACGKTCLLIVNSKD   25 (177)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHhC
Confidence            699999999998766

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.81  E-value=0.11  Score=34.25  Aligned_cols=15  Identities=47%  Similarity=0.680  Sum_probs=13.2

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|..++.++
T Consensus        14 ~~vGKTsli~~~~~~   28 (183)
T d1mh1a_          14 GAVGKTCLLISYTTN   28 (183)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHhC
Confidence            699999999988765

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.49  E-value=0.12  Score=33.81  Aligned_cols=15  Identities=40%  Similarity=0.775  Sum_probs=13.0

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||+..+.+.
T Consensus        13 ~~vGKTsLi~~~~~~   27 (175)
T d2f9la1          13 SGVGKSNLLSRFTRN   27 (175)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHhC
Confidence            699999999988765

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=87.47  E-value=0.13  Score=33.45  Aligned_cols=16  Identities=38%  Similarity=0.542  Sum_probs=13.2

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      .+|+|||||..++...
T Consensus         8 ~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           8 RPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             CTTSSHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHhCC
Confidence            3799999999999754

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=87.45  E-value=0.11  Score=33.84  Aligned_cols=16  Identities=38%  Similarity=0.669  Sum_probs=13.7

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      .+|+|||||...+.+.
T Consensus        24 ~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          24 LDNAGKTTLLKQLASE   39 (176)
T ss_dssp             STTSSHHHHHHHHCCS
T ss_pred             CCCCCHHHHHHHHhcC
Confidence            4799999999998765

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=87.44  E-value=0.11  Score=33.85  Aligned_cols=15  Identities=40%  Similarity=0.625  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+...
T Consensus        22 ~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          22 DNAGKTTLLHMLKDD   36 (186)
T ss_dssp             TTSSHHHHHHHHSCC
T ss_pred             CCCCHHHHHHHHhCC
Confidence            799999999998765

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=87.41  E-value=0.18  Score=35.31  Aligned_cols=17  Identities=24%  Similarity=0.497  Sum_probs=13.9

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||++.+..-+
T Consensus        36 ~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          36 PSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             CTTSSHHHHHHHHTTSS
T ss_pred             CCCCCHHHHHHHHHHhh
Confidence            37999999999987543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.38  E-value=0.084  Score=36.47  Aligned_cols=15  Identities=67%  Similarity=0.820  Sum_probs=13.2

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      -|+|||||.+++..+
T Consensus        12 LGaGKTTll~~lL~~   26 (222)
T d1nija1          12 LGAGKTTLLRHILNE   26 (222)
T ss_dssp             SSSSCHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHhc
Confidence            499999999999876

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.36  E-value=0.12  Score=34.16  Aligned_cols=15  Identities=53%  Similarity=0.729  Sum_probs=13.2

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|...+.++
T Consensus        18 ~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          18 GAVGKTCLLMSYAND   32 (185)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHhhC
Confidence            699999999998765

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.33  E-value=0.13  Score=34.01  Aligned_cols=15  Identities=53%  Similarity=0.818  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        11 ~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_          11 SGVGKTSLMNQYVNK   25 (184)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHhC
Confidence            699999999998865

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=87.15  E-value=0.13  Score=33.46  Aligned_cols=15  Identities=40%  Similarity=0.645  Sum_probs=13.0

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|...+.+.
T Consensus        13 ~~vGKTsli~~~~~~   27 (168)
T d1u8za_          13 GGVGKSALTLQFMYD   27 (168)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHhC
Confidence            699999999998754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.96  E-value=0.14  Score=32.45  Aligned_cols=15  Identities=47%  Similarity=0.660  Sum_probs=13.5

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus         9 ~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           9 DNAGKTTLLHMLKND   23 (166)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHhCC
Confidence            799999999998876

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=86.92  E-value=0.14  Score=33.91  Aligned_cols=15  Identities=20%  Similarity=0.477  Sum_probs=13.5

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+||||+|..+..+
T Consensus        24 sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          24 SGIGKSETALELIKR   38 (169)
T ss_dssp             TTSSHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHc
Confidence            799999999998776

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.80  E-value=0.14  Score=33.33  Aligned_cols=15  Identities=47%  Similarity=0.747  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|...+.++
T Consensus        13 ~~vGKTsll~~~~~~   27 (169)
T d1x1ra1          13 GGVGKSALTIQFFQK   27 (169)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHhC
Confidence            699999999998865

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.72  E-value=0.14  Score=33.19  Aligned_cols=15  Identities=20%  Similarity=0.481  Sum_probs=13.2

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|...+.+.
T Consensus        12 ~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_          12 AAVGKSSIVLRFVSN   26 (170)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHhC
Confidence            699999999998765

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.69  E-value=0.15  Score=33.32  Aligned_cols=15  Identities=40%  Similarity=0.519  Sum_probs=13.0

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|...+...
T Consensus        12 ~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1          12 QGVGKSTLANIFAGV   26 (172)
T ss_dssp             TTSSHHHHHHHHHCC
T ss_pred             CCcCHHHHHHHHHhC
Confidence            699999999988754

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=86.62  E-value=0.14  Score=37.72  Aligned_cols=16  Identities=38%  Similarity=0.526  Sum_probs=14.4

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      =|+||||+++.+.+.+
T Consensus        14 iGsGKSTl~~~L~~~l   29 (331)
T d1osna_          14 YGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             SSSCTTHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            3999999999999886

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=86.60  E-value=0.22  Score=34.62  Aligned_cols=17  Identities=35%  Similarity=0.372  Sum_probs=14.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +.|+|||||.+.+..-.
T Consensus        34 psGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          34 PTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             CCTHHHHHHHHHHHTSS
T ss_pred             CCCCcHHHHHHHHhcCc
Confidence            47999999999998763

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.59  E-value=0.15  Score=33.66  Aligned_cols=15  Identities=33%  Similarity=0.445  Sum_probs=13.2

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|...+.+.
T Consensus        11 ~~vGKTsli~r~~~~   25 (179)
T d1m7ba_          11 SQCGKTALLHVFAKD   25 (179)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHhC
Confidence            699999999988775

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.57  E-value=0.15  Score=33.16  Aligned_cols=15  Identities=47%  Similarity=0.749  Sum_probs=12.9

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|+.++.+.
T Consensus        15 ~~vGKTsli~~~~~~   29 (170)
T d2g6ba1          15 SGVGKTCLLVRFKDG   29 (170)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHhC
Confidence            689999999988664

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.48  E-value=0.14  Score=33.74  Aligned_cols=15  Identities=27%  Similarity=0.510  Sum_probs=12.9

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|..++...
T Consensus        11 ~~vGKTsl~~r~~~~   25 (195)
T d1svsa1          11 GESGKSTIVKQMKII   25 (195)
T ss_dssp             TTSSHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHhhC
Confidence            799999999998654

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=86.28  E-value=0.13  Score=37.89  Aligned_cols=16  Identities=31%  Similarity=0.212  Sum_probs=12.7

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      =|+||||+++.+.+.+
T Consensus        13 iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_          13 HGMGKTTTTQLLVALG   28 (329)
T ss_dssp             TTSSHHHHHHHHTC--
T ss_pred             cCCCHHHHHHHHHHHh
Confidence            3999999999998764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.22  E-value=0.15  Score=33.94  Aligned_cols=15  Identities=40%  Similarity=0.736  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        15 ~~vGKTsli~~l~~~   29 (194)
T d2bcgy1          15 SGVGKSCLLLRFSDD   29 (194)
T ss_dssp             TTSSHHHHHHHHHHC
T ss_pred             CCcCHHHHHHHHhhC
Confidence            799999999998865

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.14  E-value=0.16  Score=33.12  Aligned_cols=15  Identities=40%  Similarity=0.793  Sum_probs=12.8

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        15 ~~vGKSSli~~~~~~   29 (174)
T d1wmsa_          15 GGVGKSSLMNRYVTN   29 (174)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHhC
Confidence            699999999887664

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.10  E-value=0.22  Score=35.71  Aligned_cols=17  Identities=41%  Similarity=0.530  Sum_probs=14.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      ..|+|||||++.++.-+
T Consensus        70 ~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          70 STGSGKTSLLMLILGEL   86 (281)
T ss_dssp             STTSSHHHHHHHHHTSS
T ss_pred             CCCChHHHHHHHHhCCC
Confidence            36999999999998765

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=86.03  E-value=0.28  Score=34.51  Aligned_cols=17  Identities=35%  Similarity=0.516  Sum_probs=14.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +.|+|||||++.++.-.
T Consensus        38 ~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          38 PNGSGKSTLINVITGFL   54 (254)
T ss_dssp             STTSSHHHHHHHHTTSS
T ss_pred             CCCCcHHHHHHHHHCCC
Confidence            36999999999998764

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.01  E-value=0.17  Score=32.90  Aligned_cols=15  Identities=40%  Similarity=0.596  Sum_probs=13.5

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||..++.+.
T Consensus        14 ~nvGKSSLin~L~~~   28 (179)
T d1egaa1          14 PNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             SSSSHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHhCC
Confidence            699999999999864

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.93  E-value=0.16  Score=33.69  Aligned_cols=15  Identities=47%  Similarity=0.680  Sum_probs=13.0

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|...+.+.
T Consensus        12 ~~vGKTSli~r~~~~   26 (191)
T d2ngra_          12 GAVGKTCLLISYTTN   26 (191)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHhC
Confidence            699999999888765

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.86  E-value=0.15  Score=33.76  Aligned_cols=13  Identities=38%  Similarity=0.736  Sum_probs=11.6

Q ss_pred             CCCcHHHHHHHHH
Q 046006            2 GGVGKTTLLTHIN   14 (180)
Q Consensus         2 gGiGKTtLA~~~~   14 (180)
                      +|+|||||...+.
T Consensus        11 ~~vGKTsll~r~~   23 (200)
T d1zcba2          11 GESGKSTFLKQMR   23 (200)
T ss_dssp             TTSSHHHHHHHHH
T ss_pred             CCCCHHHHHHHHh
Confidence            7999999999983

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=85.82  E-value=0.2  Score=35.10  Aligned_cols=16  Identities=38%  Similarity=0.499  Sum_probs=13.7

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      .+|+|||||.+.+..-
T Consensus        39 ~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          39 PSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             SCHHHHHHHHHHHHTS
T ss_pred             CCCCcHHHHHHHHHcC
Confidence            3799999999998764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.59  E-value=0.18  Score=33.04  Aligned_cols=15  Identities=40%  Similarity=0.771  Sum_probs=13.0

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|...+.+.
T Consensus        16 ~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          16 SGVGKSSLLLRFTDD   30 (177)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHhC
Confidence            699999999998764

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=85.54  E-value=0.31  Score=33.98  Aligned_cols=17  Identities=41%  Similarity=0.524  Sum_probs=14.4

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +.|.|||||.+.+..-.
T Consensus        40 pnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          40 ANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             STTSSHHHHHHHHTTSS
T ss_pred             CCCCcHHHHHHHHhCCC
Confidence            46999999999997664

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=85.42  E-value=0.23  Score=36.88  Aligned_cols=45  Identities=18%  Similarity=0.276  Sum_probs=24.7

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIV   45 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i   45 (180)
                      .||+||||++..+...+......-...+.+...+......+...+
T Consensus       171 ~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~  215 (359)
T d1w36d1         171 GPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESL  215 (359)
T ss_dssp             CTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHH
T ss_pred             CCCCCceehHHHHHHHHHHHHhccCCeEEEecCcHHHHHHHHHHH
Confidence            489999998866543322111222346777666544444444443

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=85.29  E-value=0.2  Score=32.31  Aligned_cols=16  Identities=31%  Similarity=0.364  Sum_probs=13.5

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      .+|+|||||..++...
T Consensus        10 ~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1          10 LQYSGKTTFVNVIASG   25 (164)
T ss_dssp             STTSSHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHcC
Confidence            3799999999988765

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=85.18  E-value=0.2  Score=32.77  Aligned_cols=15  Identities=40%  Similarity=0.538  Sum_probs=13.5

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...++..
T Consensus        14 ~~~GKSSLin~l~~~   28 (178)
T d1wf3a1          14 PNVGKSTLLNNLLGV   28 (178)
T ss_dssp             TTSSHHHHHHHHHTS
T ss_pred             CCCCHHHHHHHHhCC
Confidence            699999999999865

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=84.81  E-value=0.21  Score=31.81  Aligned_cols=15  Identities=27%  Similarity=0.556  Sum_probs=13.1

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||..++...
T Consensus        10 ~nvGKSsLin~l~~~   24 (161)
T d2gj8a1          10 PNAGKSSLLNALAGR   24 (161)
T ss_dssp             TTSSHHHHHHHHHTS
T ss_pred             CCCCHHHHHHHHhCC
Confidence            799999999999754

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.80  E-value=0.17  Score=33.41  Aligned_cols=15  Identities=27%  Similarity=0.503  Sum_probs=13.0

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|..++...
T Consensus        11 ~~vGKTsll~r~~~~   25 (200)
T d2bcjq2          11 GESGKSTFIKQMRII   25 (200)
T ss_dssp             TTSSHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHhCC
Confidence            799999999998655

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=84.61  E-value=0.16  Score=33.14  Aligned_cols=15  Identities=33%  Similarity=0.457  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        21 ~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          21 DAAGKTTILYKLKLG   35 (173)
T ss_dssp             TTSSHHHHHHHTTCC
T ss_pred             CCCCHHHHHHHHhcC
Confidence            799999999999765

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.37  E-value=0.21  Score=33.27  Aligned_cols=15  Identities=40%  Similarity=0.558  Sum_probs=13.5

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        12 ~n~GKTSLln~l~~~   26 (209)
T d1nrjb_          12 QNSGKTSLLTLLTTD   26 (209)
T ss_dssp             TTSSHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHhCC
Confidence            799999999999866

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=83.99  E-value=0.24  Score=32.33  Aligned_cols=15  Identities=40%  Similarity=0.676  Sum_probs=13.7

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus         9 ~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           9 SNVGKSTLIYRLTGK   23 (184)
T ss_dssp             TTSSHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHhCC
Confidence            799999999999876

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.97  E-value=0.23  Score=32.65  Aligned_cols=15  Identities=20%  Similarity=0.352  Sum_probs=13.1

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|...+.+.
T Consensus        14 ~~vGKTsLi~~~~~~   28 (175)
T d2bmja1          14 ARSGKSSLIHRFLTG   28 (175)
T ss_dssp             TTTTHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHhC
Confidence            699999999988765

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.93  E-value=0.12  Score=33.72  Aligned_cols=15  Identities=40%  Similarity=0.594  Sum_probs=11.7

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||+|...+.+.
T Consensus        12 ~~vGKTsli~~~~~~   26 (170)
T d1i2ma_          12 GGTGKTTFVKRHLTG   26 (170)
T ss_dssp             TTSSHHHHHHTTC--
T ss_pred             CCcCHHHHHHHHHhC
Confidence            799999999987655

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=83.86  E-value=0.16  Score=33.32  Aligned_cols=15  Identities=40%  Similarity=0.594  Sum_probs=13.0

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||..++.+.
T Consensus        26 ~~vGKTsLi~~l~~~   40 (182)
T d1moza_          26 DGAGKTTILYRLQIG   40 (182)
T ss_dssp             TTSSHHHHHHHTCCS
T ss_pred             CCCCHHHHHHHHhcC
Confidence            699999999998654

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=83.59  E-value=0.44  Score=33.14  Aligned_cols=17  Identities=41%  Similarity=0.473  Sum_probs=14.3

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      +.|+|||||.+.+..-.
T Consensus        36 ~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          36 PNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             CTTSSHHHHHHHHTTSS
T ss_pred             CCCCCHHHHHHHHhcCC
Confidence            46999999999997664

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.22  E-value=0.13  Score=33.63  Aligned_cols=15  Identities=40%  Similarity=0.660  Sum_probs=2.5

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.++
T Consensus        15 ~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1          15 SGVGKTCVLFRFSED   29 (173)
T ss_dssp             CCC------------
T ss_pred             CCcCHHHHHHHHHhC
Confidence            699999999877754

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=83.14  E-value=0.28  Score=35.82  Aligned_cols=17  Identities=29%  Similarity=0.559  Sum_probs=14.6

Q ss_pred             CCCCcHHHHHHHHHccc
Q 046006            1 MGGVGKTTLLTHINNKF   17 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~   17 (180)
                      .||+|||||..++...+
T Consensus        59 ~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          59 VPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CTTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            48999999999988764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=82.50  E-value=0.21  Score=32.70  Aligned_cols=15  Identities=27%  Similarity=0.499  Sum_probs=13.1

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+...
T Consensus        10 ~nvGKSTLin~L~~~   24 (180)
T d1udxa2          10 PNAGKSSLLAAMTRA   24 (180)
T ss_dssp             GGGCHHHHHHHHCSS
T ss_pred             CCCCHHHHHHHHhCC
Confidence            689999999999754

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=82.28  E-value=0.3  Score=32.28  Aligned_cols=15  Identities=27%  Similarity=0.636  Sum_probs=13.4

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        32 ~n~GKSTLin~L~g~   46 (195)
T d1svia_          32 SNVGKSSFINSLINR   46 (195)
T ss_dssp             TTSSHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHhcCC
Confidence            799999999999864

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=82.17  E-value=0.37  Score=35.22  Aligned_cols=43  Identities=21%  Similarity=0.101  Sum_probs=19.1

Q ss_pred             CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHH
Q 046006            1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEI   44 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~   44 (180)
                      .||+|||||...+...+. .+.+=-+++=+..+++.+--.++.+
T Consensus        62 ~pGaGKSTLi~~l~~~~~-~~g~~vavlavDpss~~~ggailgd  104 (327)
T d2p67a1          62 TPGAGKSTFLEAFGMLLI-REGLKVAVIAVDPSSPVTGGSILGD  104 (327)
T ss_dssp             CTTSCHHHHHHHHHHHHH-HTTCCEEEEEECCC-----------
T ss_pred             CCCCCHHHHHHHHHHHHH-hcCCceeeecCCCceeeeccccccc
Confidence            489999999999887642 1121112333444444444444433

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=82.16  E-value=0.31  Score=31.84  Aligned_cols=15  Identities=53%  Similarity=0.660  Sum_probs=13.2

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+.+.
T Consensus        17 ~~~GKSTLin~l~~~   31 (186)
T d1mkya2          17 PNVGKSTLFNAILNK   31 (186)
T ss_dssp             TTSSHHHHHHHHHTS
T ss_pred             CCCCHHHHHHHHHCC
Confidence            699999999998865

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.09  E-value=0.26  Score=34.07  Aligned_cols=15  Identities=53%  Similarity=0.815  Sum_probs=13.5

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||...+..+
T Consensus       104 SGVGKSTLiN~L~~~  118 (225)
T d1u0la2         104 SGVGKSSLLNAINPG  118 (225)
T ss_dssp             TTSSHHHHHHHHSTT
T ss_pred             CCCCHHHHHHhhcch
Confidence            799999999999765

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.02  E-value=0.31  Score=32.56  Aligned_cols=16  Identities=25%  Similarity=0.349  Sum_probs=13.7

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      .+|+|||||...+...
T Consensus         8 ~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           8 LCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             STTSSHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHcC
Confidence            3799999999998765

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=81.73  E-value=0.66  Score=32.60  Aligned_cols=12  Identities=42%  Similarity=0.639  Sum_probs=8.8

Q ss_pred             CCCCcHHHHHHH
Q 046006            1 MGGVGKTTLLTH   12 (180)
Q Consensus         1 mgGiGKTtLA~~   12 (180)
                      .+|+||||.+.+
T Consensus        22 ~aGTGKTt~l~~   33 (306)
T d1uaaa1          22 GAGSGKTRVITN   33 (306)
T ss_dssp             CTTSCHHHHHHH
T ss_pred             eCCccHHHHHHH
Confidence            379999986543

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=81.68  E-value=0.33  Score=33.62  Aligned_cols=16  Identities=38%  Similarity=0.603  Sum_probs=13.4

Q ss_pred             CCCCcHHHHHHHHHcc
Q 046006            1 MGGVGKTTLLTHINNK   16 (180)
Q Consensus         1 mgGiGKTtLA~~~~~~   16 (180)
                      ..|.|||||.+.+..-
T Consensus        33 ~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          33 PNGAGKSTLLARMAGM   48 (231)
T ss_dssp             CTTSSHHHHHHHHHTS
T ss_pred             CCCCcHHHHHHHHhCC
Confidence            3699999999998764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=81.67  E-value=0.31  Score=32.89  Aligned_cols=14  Identities=29%  Similarity=0.297  Sum_probs=11.4

Q ss_pred             CCCCcHHHHHHHHH
Q 046006            1 MGGVGKTTLLTHIN   14 (180)
Q Consensus         1 mgGiGKTtLA~~~~   14 (180)
                      +.|+||||.|+.+-
T Consensus        11 ~igSGKStv~~~l~   24 (208)
T d1vhta_          11 GIGSGKSTVANAFA   24 (208)
T ss_dssp             CTTSCHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHH
Confidence            46999999998664

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.53  E-value=0.33  Score=33.12  Aligned_cols=15  Identities=27%  Similarity=0.499  Sum_probs=12.7

Q ss_pred             CCCcHHHHHHHHHcc
Q 046006            2 GGVGKTTLLTHINNK   16 (180)
Q Consensus         2 gGiGKTtLA~~~~~~   16 (180)
                      +|+|||||..++...
T Consensus        15 ~~vGKTsll~~~~~~   29 (221)
T d1azta2          15 GESGKSTIVKQMRIL   29 (221)
T ss_dssp             TTSSHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHhcC
Confidence            799999999998644

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=81.52  E-value=0.29  Score=34.47  Aligned_cols=16  Identities=38%  Similarity=0.586  Sum_probs=13.3

Q ss_pred             CCCcHHHHHHHHHccc
Q 046006            2 GGVGKTTLLTHINNKF   17 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~   17 (180)
                      .|+|||||++.+..-+
T Consensus        53 sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          53 SGGGKSTLINLIPRFY   68 (255)
T ss_dssp             TTSSHHHHHTTTTTSS
T ss_pred             CCCcHHHHHHHHHhcC
Confidence            6999999999886543

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=80.51  E-value=0.14  Score=36.88  Aligned_cols=70  Identities=11%  Similarity=0.129  Sum_probs=31.8

Q ss_pred             CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC--CCHHHHHHHHHHH--hCCC--CCCCCCCcChHHHHHHHHHHhC
Q 046006            2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD--LQLEKIQEIVGKK--VGLL--DGDSWKNKNSEEKALEIFRFLS   74 (180)
Q Consensus         2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~--l~~~--~~~~~~~~~~~~~~~~l~~~L~   74 (180)
                      +|+||||+|+.+.+.+..  .... .+.++...-  ++-.++-..+...  .+..  +...+...+.+.+.+.++...+
T Consensus        13 SGSGKTTva~~l~~i~~~--~~v~-~~iI~~Dsfyr~~R~~~~~~~~~~~~~~~~~~~~~~P~A~d~dlL~~~l~~L~~   88 (288)
T d1a7ja_          13 SGAGTSTVKHTFDQIFRR--EGVK-AVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERVFREYGE   88 (288)
T ss_dssp             C---CCTHHHHHHHHHHH--HTCC-EEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHhh--cCCC-eEEEeCCCCCccchhhhhhhhhhhhhhhccCCCCCCcccccHHHHHHHHHHHHC
Confidence            699999999998776531  2222 234444432  2333332222211  1111  0223445566766666666553